CS348_15940 e97832ba12ff157c43824265fd8ba236 300 Pfam PF08443 RimK-like ATP-grasp domain 97 286 6.8E-78 T 13-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 CS348_15940 e97832ba12ff157c43824265fd8ba236 300 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.257 T 13-10-2018 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK CS348_15940 e97832ba12ff157c43824265fd8ba236 300 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 5.1E-93 T 13-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 CS348_15940 e97832ba12ff157c43824265fd8ba236 300 Gene3D G3DSA:3.30.1490.20 115 180 6.4E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_15940 e97832ba12ff157c43824265fd8ba236 300 Gene3D G3DSA:3.40.50.20 1 114 1.6E-37 T 13-10-2018 CS348_15940 e97832ba12ff157c43824265fd8ba236 300 Gene3D G3DSA:3.30.470.80 182 300 1.3E-49 T 13-10-2018 CS348_15940 e97832ba12ff157c43824265fd8ba236 300 SUPERFAMILY SSF56059 98 288 5.13E-51 T 13-10-2018 CS348_14305 553f550c5a32cc7569777748c98c9a1b 273 Gene3D G3DSA:3.30.1600.10 57 193 8.4E-85 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily CS348_14305 553f550c5a32cc7569777748c98c9a1b 273 Gene3D G3DSA:3.40.50.1220 43 263 8.4E-85 T 13-10-2018 CS348_14305 553f550c5a32cc7569777748c98c9a1b 273 SUPERFAMILY SSF52467 42 269 3.66E-74 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_14305 553f550c5a32cc7569777748c98c9a1b 273 Pfam PF02146 Sir2 family 48 221 8.2E-52 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 CS348_14305 553f550c5a32cc7569777748c98c9a1b 273 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 41 271 61.232 T 13-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 SMART SM00448 7 120 2.2E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 207 2.2E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 Pfam PF00072 Response regulator receiver domain 9 121 1.6E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 SUPERFAMILY SSF52172 7 137 3.42E-34 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 SMART SM00421 151 208 3.4E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 SUPERFAMILY SSF46894 137 210 8.16E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 2.7E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 2.7E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 2.7E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 Gene3D G3DSA:3.40.50.12740 8 212 8.8E-66 T 13-10-2018 CS348_08435 2e7f628c3c818eafe3885060ca04d5be 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 PRINTS PR00045 Sigma-54 factor signature 186 203 2.0E-31 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 PRINTS PR00045 Sigma-54 factor signature 376 388 2.0E-31 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 PRINTS PR00045 Sigma-54 factor signature 450 468 2.0E-31 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 PRINTS PR00045 Sigma-54 factor signature 392 403 2.0E-31 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 2.5E-62 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 9.6E-16 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 PIRSF PIRSF000774 1 477 3.5E-152 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 1.1E-70 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 Gene3D G3DSA:1.10.10.60 417 474 2.0E-23 T 13-10-2018 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 Gene3D G3DSA:1.10.10.1330 116 252 1.3E-25 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_02635 d184996d0aa31d79e4eea6e30d03f9f6 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 474 2.3E-165 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CS348_04465 d60b1342c1a25f074a93c8a602be17d0 228 SUPERFAMILY SSF46785 7 78 3.18E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04465 d60b1342c1a25f074a93c8a602be17d0 228 SUPERFAMILY SSF55781 72 226 2.49E-8 T 13-10-2018 CS348_04465 d60b1342c1a25f074a93c8a602be17d0 228 Gene3D G3DSA:3.30.450.40 79 228 2.9E-6 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_04465 d60b1342c1a25f074a93c8a602be17d0 228 SMART SM00346 6 95 0.0042 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_04465 d60b1342c1a25f074a93c8a602be17d0 228 Gene3D G3DSA:1.10.10.10 6 78 2.3E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 549 633 1.7E-11 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 711 795 3.0E-13 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 70 258 1.44E-29 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF54523 1322 1433 4.24E-25 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1311 1348 1.3E-6 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1258 1298 3.9E-10 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 610 654 2.5E-13 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 681 725 7.0E-14 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 772 816 1.2E-13 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 232 275 1.9E-6 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1001 1038 4.6E-9 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 519 563 9.0E-13 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 428 472 2.0E-12 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 337 381 1.0E-11 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1137 1177 1.1E-11 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 843 886 1.2E-12 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 551 637 1.57E-6 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 378 454 2.75E-7 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 343 387 1.2E-12 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 434 478 4.6E-13 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 899 1032 2.6E-21 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 1033 1191 1.0E-58 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 687 710 5.6E-13 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 849 876 1.6E-14 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 525 548 1.4E-12 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 279 364 2.48E-7 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 1196 1281 3.6E-24 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 1282 1337 3.0E-5 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.4E-9 T 13-10-2018 IPR024973 ESPR domain CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 1202 1279 3.27E-18 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 796 822 8.3E-8 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 634 660 6.3E-7 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:1.20.5.170 231 326 1.7E-21 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 655 708 4.71E-7 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:3.30.1300.30 1338 1433 2.1E-31 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 1043 1157 4.84E-24 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.60.40.4050 185 230 5.7E-13 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Gene3D G3DSA:2.150.10.10 77 184 1.1E-13 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 901 1023 6.15E-17 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF03895 YadA-like membrane anchor domain 1373 1433 2.5E-17 T 13-10-2018 IPR005594 YadA-like, C-terminal CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 462 545 1.2E-6 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 819 868 2.35E-7 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 SUPERFAMILY SSF101967 713 799 9.68E-8 T 13-10-2018 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 1214 1240 2.2E-6 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 146 172 3.3E-6 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 1076 1102 4.1E-4 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 915 941 5.4E-5 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 202 227 1.4E-6 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_00745 125e0f113719c8b101c63e7908eeb838 1433 Pfam PF05658 Head domain of trimeric autotransporter adhesin 174 200 9.8E-5 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_13045 cb00119341bfbd39a4adccbb06fb07f7 71 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 1 71 5.0E-33 T 13-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 CS348_13045 cb00119341bfbd39a4adccbb06fb07f7 71 SUPERFAMILY SSF140129 1 67 9.29E-23 T 13-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 CS348_13045 cb00119341bfbd39a4adccbb06fb07f7 71 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 3 71 1.2E-24 T 13-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 CS348_13045 cb00119341bfbd39a4adccbb06fb07f7 71 Gene3D G3DSA:1.20.58.90 3 71 6.9E-7 T 13-10-2018 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 SUPERFAMILY SSF90123 641 956 4.32E-68 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Pfam PF00005 ABC transporter 357 510 9.9E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Gene3D G3DSA:1.20.1560.10 625 953 4.1E-76 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 SUPERFAMILY SSF52540 961 1203 2.82E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Gene3D G3DSA:3.40.50.300 335 584 2.6E-78 T 13-10-2018 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Pfam PF00005 ABC transporter 984 1133 1.4E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 SMART SM00382 993 1181 2.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 SMART SM00382 366 557 8.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 ProSitePatterns PS00211 ABC transporters family signature. 482 496 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 SUPERFAMILY SSF90123 16 322 2.49E-53 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Gene3D G3DSA:1.20.1560.10 9 325 9.5E-57 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Gene3D G3DSA:3.40.50.300 962 1213 9.8E-75 T 13-10-2018 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 SUPERFAMILY SSF52540 340 578 1.47E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Pfam PF00664 ABC transporter transmembrane region 653 922 1.1E-43 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_06215 fbdd6932a2c089e0248676bf62ffafb8 1214 Pfam PF00664 ABC transporter transmembrane region 29 296 2.2E-31 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_03750 91e460709c3cb80c56dd65188344baaa 454 SUPERFAMILY SSF52540 184 437 5.67E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_03750 91e460709c3cb80c56dd65188344baaa 454 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 14 444 1.2E-141 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 CS348_03750 91e460709c3cb80c56dd65188344baaa 454 Gene3D G3DSA:3.40.50.300 163 446 3.8E-92 T 13-10-2018 CS348_03750 91e460709c3cb80c56dd65188344baaa 454 Pfam PF00772 DnaB-like helicase N terminal domain 13 112 1.7E-31 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CS348_03750 91e460709c3cb80c56dd65188344baaa 454 Pfam PF03796 DnaB-like helicase C terminal domain 186 442 1.5E-93 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 CS348_03750 91e460709c3cb80c56dd65188344baaa 454 SUPERFAMILY SSF48024 10 120 4.58E-35 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 CS348_03750 91e460709c3cb80c56dd65188344baaa 454 Gene3D G3DSA:1.10.860.10 4 161 1.4E-45 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CS348_18775 9d1c7d9d69021421d969df4177265bfc 246 Pfam PF03734 L,D-transpeptidase catalytic domain 45 160 2.1E-6 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CS348_18775 9d1c7d9d69021421d969df4177265bfc 246 SUPERFAMILY SSF141523 42 159 2.49E-10 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_08805 8382bbecab149e414852bc72d253b3a5 315 SUPERFAMILY SSF56601 3 277 1.8E-60 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_08805 8382bbecab149e414852bc72d253b3a5 315 Gene3D G3DSA:3.40.710.10 19 278 2.7E-61 T 13-10-2018 CS348_08805 8382bbecab149e414852bc72d253b3a5 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 5.2E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_08805 8382bbecab149e414852bc72d253b3a5 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 5.2E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_08805 8382bbecab149e414852bc72d253b3a5 315 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 5.2E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_08805 8382bbecab149e414852bc72d253b3a5 315 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 261 4.2E-86 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CS348_19370 f761d640d81e8a7f37a90bc3bca1e587 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CS348_19370 f761d640d81e8a7f37a90bc3bca1e587 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 1.2E-46 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CS348_19370 f761d640d81e8a7f37a90bc3bca1e587 159 SUPERFAMILY SSF55083 1 154 8.63E-55 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CS348_19370 f761d640d81e8a7f37a90bc3bca1e587 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 4.0E-36 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CS348_19370 f761d640d81e8a7f37a90bc3bca1e587 159 Gene3D G3DSA:3.30.70.560 2 155 2.8E-57 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 SUPERFAMILY SSF52540 27 145 5.67E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 828 838 4.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 843 861 4.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 867 880 4.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 PRINTS PR00344 Bacterial sensor protein C-terminal signature 810 824 4.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Pfam PF13493 Domain of unknown function (DUF4118) 403 507 1.5E-28 T 13-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 SMART SM00388 663 730 4.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Gene3D G3DSA:3.30.565.10 736 884 5.2E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Gene3D G3DSA:3.40.50.300 20 229 2.5E-101 T 13-10-2018 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Gene3D G3DSA:3.30.450.40 512 652 4.8E-36 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Gene3D G3DSA:1.10.287.130 653 732 2.8E-13 T 13-10-2018 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 777 882 1.3E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Pfam PF00512 His Kinase A (phospho-acceptor) domain 664 730 1.9E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Pfam PF13492 GAF domain 570 644 1.2E-6 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 SUPERFAMILY SSF55874 719 881 7.07E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 SMART SM00387 773 883 2.1E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 SUPERFAMILY SSF52402 253 362 3.35E-7 T 13-10-2018 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 SUPERFAMILY SSF47384 655 731 1.69E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Gene3D G3DSA:3.40.50.620 240 372 7.4E-6 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 230 2.0E-98 T 13-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 CS348_16745 d8dc64185fdff13d36d9ad8be01779ab 894 Gene3D G3DSA:1.20.120.620 397 502 4.4E-40 T 13-10-2018 IPR038318 KdpD, transmembrane domain superfamily CS348_20225 f02280bc15a62af5837d033ef8faf92b 281 SUPERFAMILY SSF52833 97 277 3.79E-26 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_20225 f02280bc15a62af5837d033ef8faf92b 281 Pfam PF01323 DSBA-like thioredoxin domain 113 277 4.3E-11 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CS348_20225 f02280bc15a62af5837d033ef8faf92b 281 Gene3D G3DSA:3.40.30.10 96 280 3.3E-28 T 13-10-2018 CS348_08395 328cb6f52808465fa6957804a56478ea 205 SMART SM00382 26 202 1.5E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_08395 328cb6f52808465fa6957804a56478ea 205 Gene3D G3DSA:3.40.50.300 1 201 9.2E-45 T 13-10-2018 CS348_08395 328cb6f52808465fa6957804a56478ea 205 Pfam PF00005 ABC transporter 19 153 3.9E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_08395 328cb6f52808465fa6957804a56478ea 205 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 197 1.4E-78 T 13-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 CS348_08395 328cb6f52808465fa6957804a56478ea 205 ProSitePatterns PS00211 ABC transporters family signature. 126 140 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_08395 328cb6f52808465fa6957804a56478ea 205 SUPERFAMILY SSF52540 2 185 2.15E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 SMART SM01350 179 467 4.5E-221 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.5E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.5E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.5E-89 T 13-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 PIRSF PIRSF000109 1 468 2.0E-241 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 466 2.1E-133 T 13-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 Gene3D G3DSA:1.10.1040.10 181 434 1.4E-112 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 Gene3D G3DSA:1.20.5.320 435 468 5.3E-22 T 13-10-2018 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 13-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 SUPERFAMILY SSF48179 177 467 1.17E-130 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 1.3E-51 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 SUPERFAMILY SSF51735 4 173 2.5E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 Gene3D G3DSA:3.40.50.720 1 180 6.2E-57 T 13-10-2018 CS348_09240 727c83d8a642360d2ce2584cb75b647f 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 467 5.2E-230 T 13-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 CS348_22240 45d40ec214edf57cf831d52544ab0a4e 154 Gene3D G3DSA:3.40.630.30 12 152 1.2E-29 T 13-10-2018 CS348_22240 45d40ec214edf57cf831d52544ab0a4e 154 Pfam PF00583 Acetyltransferase (GNAT) family 45 143 7.7E-15 T 13-10-2018 IPR000182 GNAT domain CS348_22240 45d40ec214edf57cf831d52544ab0a4e 154 SUPERFAMILY SSF55729 11 148 8.35E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_07770 aa8046d5dfe472d6bcc158889d6fb1e1 124 Gene3D G3DSA:1.10.10.10 2 70 1.6E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_07770 aa8046d5dfe472d6bcc158889d6fb1e1 124 SUPERFAMILY SSF46955 3 75 2.01E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 TIGRFAM TIGR00593 pola: DNA polymerase I 9 928 3.9E-287 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Gene3D G3DSA:3.30.420.10 326 542 2.4E-72 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 845 861 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 813 824 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 700 723 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 655 677 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 754 779 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 791 802 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 678 693 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 730 743 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 PRINTS PR00868 DNA-polymerase family A (pol I) signature 875 888 1.1E-80 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Pfam PF01612 3'-5' exonuclease 330 517 1.5E-45 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Pfam PF00476 DNA polymerase family A 552 925 1.7E-159 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Gene3D G3DSA:1.10.150.20 174 253 4.8E-95 T 13-10-2018 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 ProSitePatterns PS00447 DNA polymerase family A signature. 754 773 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Gene3D G3DSA:1.20.1060.10 543 658 2.9E-43 T 13-10-2018 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 9.6E-55 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Gene3D G3DSA:1.10.150.20 709 852 6.2E-120 T 13-10-2018 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SUPERFAMILY SSF53098 327 518 3.86E-55 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SMART SM00279 173 208 1.2E-13 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SUPERFAMILY SSF56672 523 928 9.34E-162 T 13-10-2018 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 270 6.7E-30 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Gene3D G3DSA:3.40.50.1010 9 284 4.8E-95 T 13-10-2018 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SMART SM00482 686 892 2.0E-126 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SMART SM00475 7 268 1.1E-142 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SUPERFAMILY SSF88723 7 170 1.07E-56 T 13-10-2018 IPR029060 PIN-like domain superfamily CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SUPERFAMILY SSF47807 171 291 7.63E-29 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 SMART SM00474 330 517 2.8E-50 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CS348_23805 d531c0625ebe2ea8b279812dcc8a0e90 928 Gene3D G3DSA:3.30.70.370 664 924 6.2E-120 T 13-10-2018 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 1.5E-74 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.621 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 Gene3D G3DSA:3.30.160.20 154 224 2.6E-20 T 13-10-2018 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 Gene3D G3DSA:1.10.1520.10 4 147 4.4E-45 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 SMART SM00535 21 149 1.7E-59 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 SMART SM00358 156 224 1.6E-23 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain CS348_06645 66331ac506f8634fea6e4c91dac88596 226 SUPERFAMILY SSF69065 5 159 5.93E-50 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 1.4E-14 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain CS348_06645 66331ac506f8634fea6e4c91dac88596 226 SUPERFAMILY SSF54768 109 223 1.35E-27 T 13-10-2018 CS348_06645 66331ac506f8634fea6e4c91dac88596 226 Pfam PF14622 Ribonuclease-III-like 20 141 1.2E-33 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 Pfam PF01266 FAD dependent oxidoreductase 5 323 9.0E-48 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 476 2.7E-12 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.7E-28 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.7E-28 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.7E-28 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.7E-28 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.7E-28 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.7E-28 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 SUPERFAMILY SSF51905 1 375 1.87E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 Gene3D G3DSA:3.30.9.10 82 320 3.1E-148 T 13-10-2018 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 SUPERFAMILY SSF54373 226 319 6.08E-6 T 13-10-2018 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 Gene3D G3DSA:3.50.50.60 5 366 3.1E-148 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_01575 0b9d6d7c97bfdf5b103aab2eb5a0dc8b 502 Gene3D G3DSA:1.10.8.870 391 461 3.0E-28 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_06925 1e1fa442b588889f059255356b624508 143 SMART SM00562 3 140 2.3E-84 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.332 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 SUPERFAMILY SSF54919 1 141 2.1E-57 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 Gene3D G3DSA:3.30.70.141 2 143 1.2E-58 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 5.9E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 5.9E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 5.9E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 5.9E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 5.9E-39 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06925 1e1fa442b588889f059255356b624508 143 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06925 1e1fa442b588889f059255356b624508 143 Pfam PF00334 Nucleoside diphosphate kinase 4 137 1.8E-53 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_22615 586123bb4ab05274bc90e2a13637a22d 279 Gene3D G3DSA:3.20.20.70 1 279 6.4E-136 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_22615 586123bb4ab05274bc90e2a13637a22d 279 SUPERFAMILY SSF51366 37 261 8.0E-20 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_21660 7e12dc35a6dce7bbabb953c930d3613a 131 Gene3D G3DSA:3.30.70.60 1 92 4.1E-33 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CS348_21660 7e12dc35a6dce7bbabb953c930d3613a 131 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 13-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_21660 7e12dc35a6dce7bbabb953c930d3613a 131 SUPERFAMILY SSF54995 1 103 1.22E-37 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21660 7e12dc35a6dce7bbabb953c930d3613a 131 Pfam PF01250 Ribosomal protein S6 3 91 3.8E-28 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21660 7e12dc35a6dce7bbabb953c930d3613a 131 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 5.7E-39 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21660 7e12dc35a6dce7bbabb953c930d3613a 131 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.693 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_11340 6c42ce3c1ca524bb5ccaab94e1cbf4ff 102 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 22.683 T 13-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 CS348_11340 6c42ce3c1ca524bb5ccaab94e1cbf4ff 102 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 85 3.6E-21 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 CS348_09555 28bf4dc04a1de1d19b46e86ba7685969 93 TIGRFAM TIGR01165 cbiN: cobalt transport protein 1 85 1.3E-40 T 13-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 CS348_09555 28bf4dc04a1de1d19b46e86ba7685969 93 Hamap MF_00330 Cobalt transport protein CbiN [cbiN]. 1 93 44.56 T 13-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 CS348_09555 28bf4dc04a1de1d19b46e86ba7685969 93 Pfam PF02553 Cobalt transport protein component CbiN 5 69 5.5E-29 T 13-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 CS348_07620 364306d7edd3595b9a90677ecd99a0df 80 ProDom PD857460 MEMBRANE YFDY INNER TRANSMEMBRANE STY2638 ECS3257 1 80 3.0E-38 T 13-10-2018 IPR024470 Protein of unknown function DUF2545 CS348_07620 364306d7edd3595b9a90677ecd99a0df 80 Pfam PF10810 Protein of unknown function (DUF2545) 1 80 3.9E-44 T 13-10-2018 IPR024470 Protein of unknown function DUF2545 CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 565 675 2.1E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 15 889 24.575 T 13-10-2018 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Pfam PF16359 RcsD-ABL domain 687 788 1.7E-41 T 13-10-2018 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 SMART SM00387 565 678 2.6E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 SUPERFAMILY SSF47226 803 888 2.22E-21 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 SUPERFAMILY SSF55874 511 680 1.58E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Pfam PF01627 Hpt domain 810 869 2.4E-10 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Gene3D G3DSA:3.40.50.11620 686 797 2.1E-49 T 13-10-2018 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Gene3D G3DSA:3.30.565.10 493 673 6.6E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_08315 cd16bf144bd269dcf452e1d296c772c4 889 Gene3D G3DSA:1.20.120.160 798 889 3.3E-11 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_10370 443251427d0bec49d2f105ec0b1af2c2 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 1 76 2.0E-37 T 13-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_10370 443251427d0bec49d2f105ec0b1af2c2 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 6.0E-38 T 13-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_10370 443251427d0bec49d2f105ec0b1af2c2 76 Gene3D G3DSA:1.20.58.250 1 76 7.8E-41 T 13-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_10370 443251427d0bec49d2f105ec0b1af2c2 76 SUPERFAMILY SSF46575 1 76 3.27E-34 T 13-10-2018 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 73 1.8E-11 T 13-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Gene3D G3DSA:3.90.100.10 593 711 8.4E-42 T 13-10-2018 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 SUPERFAMILY SSF53383 101 559 1.95E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 PIRSF PIRSF009393 3 711 1.7E-280 T 13-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 568 697 7.0E-46 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 SUPERFAMILY SSF52172 1 100 2.53E-24 T 13-10-2018 IPR011006 CheY-like superfamily CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Gene3D G3DSA:3.40.50.220 1 100 1.8E-10 T 13-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Gene3D G3DSA:3.90.1150.10 413 592 5.0E-73 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 342 356 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 101 543 2.1E-195 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 SUPERFAMILY SSF55904 563 711 3.14E-44 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CS348_04380 e13a6e007ee6cff589681ce17a75bcd1 711 Gene3D G3DSA:3.40.640.10 101 412 3.7E-83 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_23125 73656efaf06e413ed22316ca44a3b27b 176 Gene3D G3DSA:3.60.20.10 1 173 2.0E-68 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_23125 73656efaf06e413ed22316ca44a3b27b 176 Pfam PF00227 Proteasome subunit 2 167 4.0E-23 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 CS348_23125 73656efaf06e413ed22316ca44a3b27b 176 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 1.7E-86 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CS348_23125 73656efaf06e413ed22316ca44a3b27b 176 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.934 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CS348_23125 73656efaf06e413ed22316ca44a3b27b 176 PIRSF PIRSF039093 1 175 1.8E-87 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 CS348_23125 73656efaf06e413ed22316ca44a3b27b 176 SUPERFAMILY SSF56235 2 172 1.4E-58 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_00575 632793c0324ff4c7072e4d34fcf97539 78 SUPERFAMILY SSF143800 1 77 9.81E-30 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_00575 632793c0324ff4c7072e4d34fcf97539 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 9.5E-28 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_00575 632793c0324ff4c7072e4d34fcf97539 78 Gene3D G3DSA:2.30.170.40 2 78 1.5E-32 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_00575 632793c0324ff4c7072e4d34fcf97539 78 Pfam PF00830 Ribosomal L28 family 3 62 9.5E-26 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_00575 632793c0324ff4c7072e4d34fcf97539 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.158 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 Hamap MF_01528 Multidrug resistance protein MdtG [mdtG]. 1 404 53.986 T 13-10-2018 IPR023692 Multidrug resistance protein MdtG GO:0005215|GO:0005886 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 Gene3D G3DSA:1.20.1250.20 10 195 1.1E-37 T 13-10-2018 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 Pfam PF07690 Major Facilitator Superfamily 18 259 2.5E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 PRINTS PR01035 Tetracycline resistance protein signature 23 39 1.5E-12 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 PRINTS PR01035 Tetracycline resistance protein signature 311 331 1.5E-12 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 PRINTS PR01035 Tetracycline resistance protein signature 142 164 1.5E-12 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 PRINTS PR01035 Tetracycline resistance protein signature 112 133 1.5E-12 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 PRINTS PR01035 Tetracycline resistance protein signature 85 109 1.5E-12 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 PRINTS PR01035 Tetracycline resistance protein signature 346 369 1.5E-12 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 Gene3D G3DSA:1.20.1250.20 212 402 4.6E-28 T 13-10-2018 CS348_14690 ea366a4b672a0ceb93680db2474ac798 404 SUPERFAMILY SSF103473 9 399 1.57E-70 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_17335 d40c62abf59fcb2972ad445c2fdac818 82 Pfam PF06643 Protein of unknown function (DUF1158) 1 79 1.5E-46 T 13-10-2018 IPR010590 Protein of unknown function DUF1158 CS348_17335 d40c62abf59fcb2972ad445c2fdac818 82 ProDom PD027061 YBDJ MEMBRANE TRANSMEMBRANE INNER RAMA 3'REGION ECS0618 1 82 6.0E-14 T 13-10-2018 IPR010590 Protein of unknown function DUF1158 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 2.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 2.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 2.1E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 SMART SM00421 139 196 3.5E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 Pfam PF00072 Response regulator receiver domain 6 113 2.8E-5 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 Gene3D G3DSA:1.10.10.10 133 200 2.0E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 9.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 SUPERFAMILY SSF52172 2 168 3.22E-9 T 13-10-2018 IPR011006 CheY-like superfamily CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 SUPERFAMILY SSF46894 133 198 2.01E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_01205 bf21c38278fd2ef3434027901a87f2ff 200 Gene3D G3DSA:3.40.50.2300 1 126 1.5E-9 T 13-10-2018 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 Gene3D G3DSA:1.10.3860.10 4 436 5.9E-88 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 SUPERFAMILY SSF118215 28 431 3.66E-83 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 Pfam PF00375 Sodium:dicarboxylate symporter family 29 431 2.6E-92 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 PRINTS PR00173 Glutamate-aspartate symporter signature 386 406 1.8E-19 T 13-10-2018 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 PRINTS PR00173 Glutamate-aspartate symporter signature 26 46 1.8E-19 T 13-10-2018 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 PRINTS PR00173 Glutamate-aspartate symporter signature 71 91 1.8E-19 T 13-10-2018 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 PRINTS PR00173 Glutamate-aspartate symporter signature 172 194 1.8E-19 T 13-10-2018 CS348_13240 ca0fb59f265b19fb1d5bc5bc2bf1536a 448 PRINTS PR00173 Glutamate-aspartate symporter signature 359 378 1.8E-19 T 13-10-2018 CS348_22050 907535636c64711b59d212fa73555517 265 Pfam PF02432 Fimbrial, major and minor subunit 32 264 2.5E-60 T 13-10-2018 IPR003467 Fimbrial, major/minor subunit GO:0007155|GO:0009289 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 Gene3D G3DSA:1.10.40.30 363 433 8.5E-151 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 3.0E-28 T 13-10-2018 IPR000362 Fumarate lyase family CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 3.0E-28 T 13-10-2018 IPR000362 Fumarate lyase family CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 3.0E-28 T 13-10-2018 IPR000362 Fumarate lyase family CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 3.0E-28 T 13-10-2018 IPR000362 Fumarate lyase family CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 Pfam PF00206 Lyase 6 301 3.5E-101 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 9.6E-214 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 SUPERFAMILY SSF48557 3 456 7.54E-142 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 Gene3D G3DSA:1.20.200.10 108 446 8.5E-151 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.335 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 5.9E-24 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.4E-67 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.4E-67 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.4E-67 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.4E-67 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.4E-67 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.4E-67 T 13-10-2018 CS348_23000 741bfbccb3d9683f3ae8cc3365b57496 458 Gene3D G3DSA:1.10.275.10 1 107 2.1E-37 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 6.1E-46 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 Gene3D G3DSA:1.10.10.10 11 86 5.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 Gene3D G3DSA:3.30.450.40 87 263 1.8E-70 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 SUPERFAMILY SSF46785 13 86 1.43E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 2.2E-13 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 SUPERFAMILY SSF55781 77 258 4.97E-55 T 13-10-2018 CS348_10600 ba863d9ce3743ff5ebe33ffa19104987 263 SMART SM00346 13 102 1.2E-36 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 5.6E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 5.6E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 130 150 5.6E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 5.6E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 Gene3D G3DSA:1.10.10.10 4 154 1.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 Pfam PF01047 MarR family 50 104 2.8E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 ProSitePatterns PS01117 MarR-type HTH domain signature. 79 113 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 SUPERFAMILY SSF46785 38 155 3.24E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12300 c1310039300d6af0c8ff6f92dc883c9e 162 SMART SM00347 40 140 2.5E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 509 0.0 T 13-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 13-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 13-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 SUPERFAMILY SSF52283 1 168 1.45E-56 T 13-10-2018 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 9.6E-76 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 Gene3D G3DSA:3.40.50.720 137 318 1.9E-164 T 13-10-2018 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 4.5E-51 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 SMART SM01002 146 311 1.1E-83 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 PIRSF PIRSF000203 1 508 3.3E-284 T 13-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 Gene3D G3DSA:3.40.50.720 3 364 1.9E-164 T 13-10-2018 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 SMART SM01003 4 137 5.2E-75 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 426 508 4.2E-36 T 13-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CS348_12660 bfa09f2e8629e1c6acfeccf41f3ec5f6 509 SUPERFAMILY SSF51735 137 317 7.34E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_23245 cc4736b295640b0fe39403b8db89c185 240 Gene3D G3DSA:3.40.1410.10 72 228 1.4E-24 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_23245 cc4736b295640b0fe39403b8db89c185 240 SUPERFAMILY SSF64288 62 234 4.08E-28 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_23245 cc4736b295640b0fe39403b8db89c185 240 SUPERFAMILY SSF46785 5 78 1.57E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_23245 cc4736b295640b0fe39403b8db89c185 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 74 4.4E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_23245 cc4736b295640b0fe39403b8db89c185 240 SMART SM00345 15 74 4.1E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_23245 cc4736b295640b0fe39403b8db89c185 240 Gene3D G3DSA:1.10.10.10 2 71 1.8E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_23245 cc4736b295640b0fe39403b8db89c185 240 Pfam PF07702 UTRA domain 100 234 4.0E-26 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_23245 cc4736b295640b0fe39403b8db89c185 240 SMART SM00866 96 235 2.3E-19 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_23710 cbbba3bcde7f5915747cf7e048bfdaac 473 Gene3D G3DSA:1.20.1250.20 20 432 1.2E-20 T 13-10-2018 CS348_23710 cbbba3bcde7f5915747cf7e048bfdaac 473 Pfam PF13347 MFS/sugar transport protein 18 439 2.7E-86 T 13-10-2018 CS348_23710 cbbba3bcde7f5915747cf7e048bfdaac 473 SUPERFAMILY SSF103473 18 441 1.83E-35 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_23710 cbbba3bcde7f5915747cf7e048bfdaac 473 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 16 452 5.6E-156 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_23710 cbbba3bcde7f5915747cf7e048bfdaac 473 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 67 94 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 CS348_21820 750ec56b91899cb7c6fc6e6866d8d16a 316 Gene3D G3DSA:3.40.50.300 16 296 3.3E-108 T 13-10-2018 CS348_21820 750ec56b91899cb7c6fc6e6866d8d16a 316 SUPERFAMILY SSF52540 13 157 5.23E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_21820 750ec56b91899cb7c6fc6e6866d8d16a 316 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 309 29.775 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CS348_21820 750ec56b91899cb7c6fc6e6866d8d16a 316 Pfam PF01715 IPP transferase 46 290 1.5E-85 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CS348_21820 750ec56b91899cb7c6fc6e6866d8d16a 316 Gene3D G3DSA:1.10.20.140 119 190 3.3E-108 T 13-10-2018 CS348_21820 750ec56b91899cb7c6fc6e6866d8d16a 316 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 300 1.3E-122 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CS348_16010 d5d19c83cbfa1f8d462728de62404ab3 208 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 82 1.7E-13 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_16010 d5d19c83cbfa1f8d462728de62404ab3 208 Gene3D G3DSA:1.20.1050.10 86 203 8.4E-46 T 13-10-2018 CS348_16010 d5d19c83cbfa1f8d462728de62404ab3 208 Pfam PF13410 Glutathione S-transferase, C-terminal domain 127 191 1.1E-8 T 13-10-2018 CS348_16010 d5d19c83cbfa1f8d462728de62404ab3 208 SUPERFAMILY SSF52833 1 85 8.24E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_16010 d5d19c83cbfa1f8d462728de62404ab3 208 Gene3D G3DSA:3.40.30.10 1 85 2.0E-29 T 13-10-2018 CS348_16010 d5d19c83cbfa1f8d462728de62404ab3 208 SUPERFAMILY SSF47616 74 202 7.52E-29 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 SUPERFAMILY SSF52540 169 426 1.38E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Gene3D G3DSA:1.10.1780.10 1 143 5.1E-45 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Gene3D G3DSA:1.10.8.60 653 758 4.3E-38 T 13-10-2018 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 SUPERFAMILY SSF52540 437 747 1.97E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 533 551 1.5E-35 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 595 609 1.5E-35 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 491 509 1.5E-35 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 562 580 1.5E-35 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Gene3D G3DSA:3.40.50.300 159 350 1.4E-63 T 13-10-2018 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 486 647 8.6E-47 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Gene3D G3DSA:3.40.50.300 439 652 3.9E-77 T 13-10-2018 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Gene3D G3DSA:1.10.8.60 351 438 1.8E-35 T 13-10-2018 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 518 536 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 SMART SM00382 487 654 3.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 SMART SM00382 206 351 1.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 342 7.3E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 SUPERFAMILY SSF81923 1 141 4.05E-58 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 SMART SM01086 653 744 3.4E-36 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 7.9E-15 T 13-10-2018 IPR004176 Clp, N-terminal CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 734 0.0 T 13-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 653 733 1.7E-25 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_15480 2c795e2996ed299956dee8a91bdc6738 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 302 314 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CS348_00735 9d8261238b47744859fc094ab448f177 258 SUPERFAMILY SSF46785 7 75 6.22E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00735 9d8261238b47744859fc094ab448f177 258 Gene3D G3DSA:1.20.120.530 99 231 1.5E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_00735 9d8261238b47744859fc094ab448f177 258 SMART SM00895 100 224 4.3E-20 T 13-10-2018 IPR011711 GntR, C-terminal CS348_00735 9d8261238b47744859fc094ab448f177 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 71 8.0E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00735 9d8261238b47744859fc094ab448f177 258 Pfam PF07729 FCD domain 100 222 3.0E-23 T 13-10-2018 IPR011711 GntR, C-terminal CS348_00735 9d8261238b47744859fc094ab448f177 258 SUPERFAMILY SSF48008 98 229 4.71E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_00735 9d8261238b47744859fc094ab448f177 258 Gene3D G3DSA:1.10.10.10 3 71 3.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00735 9d8261238b47744859fc094ab448f177 258 SMART SM00345 12 71 1.5E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00735 9d8261238b47744859fc094ab448f177 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.4E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00735 9d8261238b47744859fc094ab448f177 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.4E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_01865 fe5fce6e7f305409b0fd6f12d2335df7 72 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 69 2.9E-36 T 13-10-2018 IPR010648 Uncharacterised protein family UPF0270 CS348_01865 fe5fce6e7f305409b0fd6f12d2335df7 72 PIRSF PIRSF006169 1 72 1.2E-38 T 13-10-2018 IPR010648 Uncharacterised protein family UPF0270 CS348_01865 fe5fce6e7f305409b0fd6f12d2335df7 72 Gene3D G3DSA:1.10.10.610 1 72 1.5E-31 T 13-10-2018 IPR036685 YehU-like superfamily CS348_01865 fe5fce6e7f305409b0fd6f12d2335df7 72 SUPERFAMILY SSF118001 1 71 4.97E-30 T 13-10-2018 IPR036685 YehU-like superfamily CS348_01865 fe5fce6e7f305409b0fd6f12d2335df7 72 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 68 5.0E-34 T 13-10-2018 IPR010648 Uncharacterised protein family UPF0270 CS348_01865 fe5fce6e7f305409b0fd6f12d2335df7 72 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 25.506 T 13-10-2018 IPR010648 Uncharacterised protein family UPF0270 CS348_07775 93ab263bb06ae16f5aa833867ddcec23 392 Hamap MF_02091 Uncharacterized MFS-type transporter YfcJ [yfcJ]. 17 392 39.08 T 13-10-2018 IPR037541 Uncharacterized MFS-type transporter YfcJ CS348_07775 93ab263bb06ae16f5aa833867ddcec23 392 Gene3D G3DSA:1.20.1250.20 8 387 6.9E-40 T 13-10-2018 CS348_07775 93ab263bb06ae16f5aa833867ddcec23 392 Pfam PF07690 Major Facilitator Superfamily 223 390 1.4E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_07775 93ab263bb06ae16f5aa833867ddcec23 392 SUPERFAMILY SSF103473 14 391 9.81E-51 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 Pfam PF00294 pfkB family carbohydrate kinase 4 298 2.2E-60 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 PRINTS PR00990 Ribokinase signature 99 112 3.7E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 PRINTS PR00990 Ribokinase signature 25 44 3.7E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 PRINTS PR00990 Ribokinase signature 217 228 3.7E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 Gene3D G3DSA:3.40.1190.20 5 319 3.4E-105 T 13-10-2018 IPR029056 Ribokinase-like CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 246 259 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_23255 b31361ec117bd1ca33532475a7da81f6 319 SUPERFAMILY SSF53613 4 307 1.47E-80 T 13-10-2018 IPR029056 Ribokinase-like CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 SUPERFAMILY SSF161098 262 503 1.57E-60 T 13-10-2018 IPR035906 MetI-like superfamily CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 Gene3D G3DSA:1.10.3720.10 270 514 6.0E-75 T 13-10-2018 IPR035906 MetI-like superfamily CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 Gene3D G3DSA:1.20.58.370 1 95 2.1E-43 T 13-10-2018 IPR035277 MalF, N-terminal CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 Gene3D G3DSA:2.40.430.10 118 205 2.1E-68 T 13-10-2018 CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 Gene3D G3DSA:3.10.650.10 98 269 2.1E-68 T 13-10-2018 CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 299 501 8.7E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 SUPERFAMILY SSF160964 15 260 5.23E-90 T 13-10-2018 CS348_22555 9c11c5161bf9794bd20fe157d4b458e0 514 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 100 260 1.4E-59 T 13-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 PIRSF PIRSF000429 1 387 1.5E-132 T 13-10-2018 IPR002155 Thiolase GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 1.7E-146 T 13-10-2018 IPR002155 Thiolase GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 SUPERFAMILY SSF53901 1 259 3.84E-79 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 Pfam PF02803 Thiolase, C-terminal domain 261 386 3.5E-51 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 4.0E-86 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 Gene3D G3DSA:3.40.47.10 127 381 4.3E-153 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 7.7E-242 T 13-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 Gene3D G3DSA:3.40.47.10 4 267 4.3E-153 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 SUPERFAMILY SSF53901 262 386 4.28E-44 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_23900 dd8e6b3fe207813bd1052cdd03d73bc2 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 62.003 T 13-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CS348_17880 9b24060a8c5fcf74f4373eff0e6bef1a 159 Gene3D G3DSA:3.90.960.10 1 159 1.2E-65 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_17880 9b24060a8c5fcf74f4373eff0e6bef1a 159 SUPERFAMILY SSF55826 2 155 1.96E-45 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_17880 9b24060a8c5fcf74f4373eff0e6bef1a 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 145 6.0E-23 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CS348_17880 9b24060a8c5fcf74f4373eff0e6bef1a 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 6.1E-56 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CS348_17880 9b24060a8c5fcf74f4373eff0e6bef1a 159 PIRSF PIRSF006181 1 159 4.5E-59 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 Gene3D G3DSA:3.40.366.10 6 286 1.3E-111 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 Pfam PF00698 Acyl transferase domain 6 282 2.6E-37 T 13-10-2018 IPR014043 Acyl transferase CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 Gene3D G3DSA:3.30.70.250 125 197 1.3E-111 T 13-10-2018 CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 SUPERFAMILY SSF55048 128 197 1.83E-17 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 307 2.9E-38 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 SUPERFAMILY SSF52151 4 307 4.19E-81 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 PIRSF PIRSF000446 1 309 8.1E-142 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CS348_14470 669a91cb6fc2cf87ecc5566cd8e62ec8 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 6.6E-133 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 169 1.6E-31 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 SUPERFAMILY SSF51735 1 194 8.86E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 PIRSF PIRSF000124 1 388 8.2E-138 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 SUPERFAMILY SSF52413 283 387 8.76E-27 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 Gene3D G3DSA:1.20.5.100 194 220 5.8E-20 T 13-10-2018 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 Gene3D G3DSA:3.40.50.720 1 193 2.2E-58 T 13-10-2018 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 SMART SM00984 300 387 2.3E-12 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 1.5E-27 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 373 1.4E-100 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 Gene3D G3DSA:3.40.50.720 222 388 6.4E-68 T 13-10-2018 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 SUPERFAMILY SSF48179 191 287 9.01E-31 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 PIRSF PIRSF500134 338 388 0.025 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 CS348_09250 3bbe4cd2f6ac08908a20740fce58f617 388 PIRSF PIRSF500134 1 344 2.2E-120 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 Gene3D G3DSA:3.10.350.10 342 396 2.2E-17 T 13-10-2018 IPR036779 LysM domain superfamily CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 SUPERFAMILY SSF53955 102 252 9.64E-42 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 SMART SM00257 345 388 2.8E-15 T 13-10-2018 IPR018392 LysM domain CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 SMART SM00257 404 446 3.8E-13 T 13-10-2018 IPR018392 LysM domain CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 124 152 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 Gene3D G3DSA:3.10.350.10 401 448 6.8E-18 T 13-10-2018 IPR036779 LysM domain superfamily CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 SUPERFAMILY SSF54106 403 446 7.19E-11 T 13-10-2018 CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 Pfam PF01476 LysM domain 346 387 1.9E-13 T 13-10-2018 IPR018392 LysM domain CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 Pfam PF01476 LysM domain 405 445 1.1E-10 T 13-10-2018 IPR018392 LysM domain CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 Gene3D G3DSA:1.10.530.10 100 254 9.0E-33 T 13-10-2018 CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 SUPERFAMILY SSF54106 344 387 6.93E-11 T 13-10-2018 CS348_18995 22ba4aadc242c0f52994fe0cb04fa4e6 455 Pfam PF01464 Transglycosylase SLT domain 105 217 1.0E-28 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_10855 9a85b72ee41388e08a8bf584ff02bf6e 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 361 4.0E-100 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_10855 9a85b72ee41388e08a8bf584ff02bf6e 378 PIRSF PIRSF000267 2 377 8.3E-117 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_10855 9a85b72ee41388e08a8bf584ff02bf6e 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 2.3E-179 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_25670 5457fd2ca4e5a638ec99cff861113097 255 Gene3D G3DSA:3.40.50.300 2 253 1.1E-70 T 13-10-2018 CS348_25670 5457fd2ca4e5a638ec99cff861113097 255 SMART SM00382 27 214 4.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_25670 5457fd2ca4e5a638ec99cff861113097 255 Pfam PF00005 ABC transporter 18 166 5.4E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_25670 5457fd2ca4e5a638ec99cff861113097 255 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_25670 5457fd2ca4e5a638ec99cff861113097 255 SUPERFAMILY SSF52540 3 227 2.13E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 4.6E-38 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 4.6E-38 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 4.6E-38 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 4.6E-38 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 Pfam PF00155 Aminotransferase class I and II 27 392 2.2E-84 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 Gene3D G3DSA:3.40.640.10 60 301 1.5E-155 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 SUPERFAMILY SSF53383 2 396 1.73E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CS348_22455 a78b85f837c17ce000918cdfb89569cb 397 Gene3D G3DSA:3.90.1150.10 11 392 1.5E-155 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:2.70.20.10 213 473 2.6E-169 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SUPERFAMILY SSF57783 809 864 7.99E-23 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 635 1.7E-266 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SMART SM00437 272 527 1.7E-127 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Pfam PF01751 Toprim domain 5 142 5.7E-34 T 13-10-2018 IPR006171 TOPRIM domain CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 323 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 106 119 2.4E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 2.4E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 2.4E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 390 406 2.4E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 2.4E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 597 622 8.2E-6 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 709 745 2.9E-11 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SMART SM00493 3 132 1.2E-35 T 13-10-2018 IPR006171 TOPRIM domain CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SUPERFAMILY SSF56712 3 609 9.29E-207 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:3.30.65.10 745 807 1.2E-32 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:3.30.65.10 700 744 4.7E-7 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SUPERFAMILY SSF57783 704 743 2.89E-7 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SUPERFAMILY SSF57783 744 807 2.04E-19 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:2.20.25.10 808 865 7.7E-33 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 824 862 1.9E-21 T 13-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 758 793 1.6E-12 T 13-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Pfam PF01131 DNA topoisomerase 157 565 1.9E-127 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:3.40.50.140 1 163 1.6E-70 T 13-10-2018 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:1.10.290.10 280 404 2.6E-169 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 SMART SM00436 133 221 3.6E-49 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 732 54.914 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 CS348_11290 c1730c93f399f2d0a89500603f3ac30b 865 Gene3D G3DSA:1.10.460.10 165 571 2.6E-169 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 5.3E-72 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 SUPERFAMILY SSF55347 149 312 2.43E-82 T 13-10-2018 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 2.8E-135 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 Gene3D G3DSA:3.30.360.10 149 314 1.6E-158 T 13-10-2018 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 SMART SM00846 3 150 1.3E-95 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 Gene3D G3DSA:3.40.50.720 4 326 1.6E-158 T 13-10-2018 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 5.1E-48 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 5.1E-48 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 5.1E-48 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 5.1E-48 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 5.1E-48 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 SUPERFAMILY SSF51735 3 166 2.84E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 1.1E-41 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_13890 6b5b65a6db3986ed55f948552e856dfd 331 PIRSF PIRSF000149 1 331 3.2E-137 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 Gene3D G3DSA:3.30.1340.10 1 85 4.1E-32 T 13-10-2018 IPR035895 HPr-like superfamily CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 2.0E-8 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 2.0E-8 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 2.0E-8 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 SUPERFAMILY SSF55594 4 90 1.96E-23 T 13-10-2018 IPR035895 HPr-like superfamily CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 7.0E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 41 56 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CS348_02615 59f23eea797b19b94e5c73eb0a4d7ae4 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 1.8E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 9.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 9.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 9.5E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.4E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.4E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.4E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.4E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.4E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_12485 8a43b15cae32f746854a5828f7a09304 248 Gene3D G3DSA:3.40.50.720 1 235 8.8E-69 T 13-10-2018 CS348_12485 8a43b15cae32f746854a5828f7a09304 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_12485 8a43b15cae32f746854a5828f7a09304 248 SUPERFAMILY SSF51735 2 231 4.85E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_12485 8a43b15cae32f746854a5828f7a09304 248 Pfam PF00106 short chain dehydrogenase 2 186 4.3E-55 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 Pfam PF01266 FAD dependent oxidoreductase 10 359 1.9E-50 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 311 317 3.1E-23 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 9 21 3.1E-23 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 38 50 3.1E-23 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 3.1E-23 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 22 32 3.1E-23 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 82 94 3.1E-23 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 Gene3D G3DSA:3.50.50.60 10 366 4.0E-82 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 SUPERFAMILY SSF51905 10 321 1.11E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 Gene3D G3DSA:3.30.9.10 86 318 4.0E-82 T 13-10-2018 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 Gene3D G3DSA:1.10.10.1100 420 492 1.2E-17 T 13-10-2018 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 10 539 5.8E-264 T 13-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 Pfam PF04324 BFD-like [2Fe-2S] binding domain 432 484 2.8E-9 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CS348_08235 92ac8fd5154114021dd642ee6d416e72 542 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 14 31 - T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CS348_02920 7b55346c589633047e80cbadbabb869d 257 Pfam PF00455 DeoR C terminal sensor domain 82 236 2.6E-50 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_02920 7b55346c589633047e80cbadbabb869d 257 SMART SM01134 78 238 9.2E-67 T 13-10-2018 CS348_02920 7b55346c589633047e80cbadbabb869d 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.5E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_02920 7b55346c589633047e80cbadbabb869d 257 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.5E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_02920 7b55346c589633047e80cbadbabb869d 257 SMART SM00420 6 58 1.8E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_02920 7b55346c589633047e80cbadbabb869d 257 SUPERFAMILY SSF46785 5 60 2.19E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_02920 7b55346c589633047e80cbadbabb869d 257 SUPERFAMILY SSF100950 81 238 1.82E-34 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_02920 7b55346c589633047e80cbadbabb869d 257 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 101 112 - T 13-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 CS348_02920 7b55346c589633047e80cbadbabb869d 257 Gene3D G3DSA:1.10.10.10 3 61 3.3E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_02920 7b55346c589633047e80cbadbabb869d 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 3.1E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_02920 7b55346c589633047e80cbadbabb869d 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_02920 7b55346c589633047e80cbadbabb869d 257 Gene3D G3DSA:3.40.50.1360 80 235 3.2E-7 T 13-10-2018 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 308 1.5E-119 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 Hamap MF_00384 Homoserine kinase [thrB]. 4 308 29.665 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 SUPERFAMILY SSF54211 1 160 9.11E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 PIRSF PIRSF000676 1 309 4.4E-86 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 PRINTS PR00958 Homoserine kinase signature 175 192 2.9E-34 T 13-10-2018 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 PRINTS PR00958 Homoserine kinase signature 9 24 2.9E-34 T 13-10-2018 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 PRINTS PR00958 Homoserine kinase signature 254 269 2.9E-34 T 13-10-2018 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 PRINTS PR00958 Homoserine kinase signature 97 112 2.9E-34 T 13-10-2018 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 PRINTS PR00958 Homoserine kinase signature 137 150 2.9E-34 T 13-10-2018 CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 Gene3D G3DSA:3.30.230.10 4 167 1.1E-96 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 SUPERFAMILY SSF55060 172 289 6.62E-34 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 Gene3D G3DSA:3.30.70.890 168 277 1.1E-96 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 Pfam PF08544 GHMP kinases C terminal 213 287 2.1E-10 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain CS348_20350 94f25d9d3fdf11dc7a69c841d6cb7455 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 9.2E-14 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CS348_16140 2db209e2ff419f15d2643a94d1890d2b 306 Pfam PF03734 L,D-transpeptidase catalytic domain 101 231 7.7E-17 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CS348_16140 2db209e2ff419f15d2643a94d1890d2b 306 Gene3D G3DSA:2.40.440.10 22 306 9.7E-92 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_16140 2db209e2ff419f15d2643a94d1890d2b 306 SUPERFAMILY SSF141523 99 233 3.53E-26 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_10160 2238bab1f1ff5ab65bce56b16b3b6486 214 Gene3D G3DSA:1.20.5.590 1 34 1.0E-25 T 13-10-2018 CS348_10160 2238bab1f1ff5ab65bce56b16b3b6486 214 PIRSF PIRSF002884 2 214 1.2E-89 T 13-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 CS348_10160 2238bab1f1ff5ab65bce56b16b3b6486 214 Gene3D G3DSA:1.10.287.500 35 168 5.1E-53 T 13-10-2018 CS348_10160 2238bab1f1ff5ab65bce56b16b3b6486 214 SUPERFAMILY SSF75708 12 213 4.45E-68 T 13-10-2018 CS348_10160 2238bab1f1ff5ab65bce56b16b3b6486 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 17 214 1.8E-77 T 13-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 615 49.287 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 345 594 1.5E-84 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 Pfam PF07549 SecD/SecF GG Motif 120 140 5.2E-6 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 Gene3D G3DSA:3.30.1360.200 278 431 4.3E-51 T 13-10-2018 CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 Gene3D G3DSA:3.30.70.3400 219 437 4.3E-51 T 13-10-2018 CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 Pfam PF02355 Protein export membrane protein 433 601 5.0E-15 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 Pfam PF13721 SecD export protein N-terminal TM region 2 103 6.0E-38 T 13-10-2018 IPR027398 SecD export protein N-terminal TM domain CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 601 2.4E-151 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CS348_18325 6de8fd05cd4b7986039d376b2ebd8ece 615 SUPERFAMILY SSF82866 338 606 8.11E-40 T 13-10-2018 CS348_15385 8e8d47e4dd2dc55c9fd534e432bae5e8 287 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 277 5.2E-113 T 13-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 CS348_21925 7812089e9b4fe9ebc294d27f97f11ecb 105 SUPERFAMILY SSF103481 5 103 2.62E-21 T 13-10-2018 CS348_21925 7812089e9b4fe9ebc294d27f97f11ecb 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.7E-32 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CS348_21925 7812089e9b4fe9ebc294d27f97f11ecb 105 Gene3D G3DSA:1.10.3730.20 1 105 8.1E-33 T 13-10-2018 CS348_11770 d13b094a4d7f60dc2a61df3dd36190a7 266 Pfam PF02698 DUF218 domain 40 173 3.8E-15 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CS348_11770 d13b094a4d7f60dc2a61df3dd36190a7 266 Gene3D G3DSA:3.40.50.620 27 181 2.4E-96 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_11770 d13b094a4d7f60dc2a61df3dd36190a7 266 Gene3D G3DSA:1.10.3620.10 12 250 2.4E-96 T 13-10-2018 CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 Pfam PF02687 FtsX-like permease family 553 641 6.9E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 SUPERFAMILY SSF52540 4 229 1.82E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 Pfam PF00005 ABC transporter 24 172 4.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 Gene3D G3DSA:3.40.50.300 1 263 8.5E-75 T 13-10-2018 CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 SMART SM00382 33 220 1.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 Pfam PF12704 MacB-like periplasmic core domain 272 491 1.6E-40 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CS348_15495 9ec4a06a0931fb90dc6dfe990f13d72d 648 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 231 273 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 SUPERFAMILY SSF46689 231 279 2.78E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 Gene3D G3DSA:1.10.10.60 175 281 1.2E-30 T 13-10-2018 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 SUPERFAMILY SSF46689 176 227 9.86E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 SMART SM00342 194 277 1.9E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 Pfam PF12833 Helix-turn-helix domain 200 278 5.0E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 Gene3D G3DSA:2.60.120.280 7 170 1.2E-69 T 13-10-2018 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 246 261 4.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 261 277 4.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 Pfam PF02311 AraC-like ligand binding domain 23 160 3.6E-26 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_19820 cec27369ba0a968fb360c10da3cf7c74 281 SUPERFAMILY SSF51215 8 162 3.66E-39 T 13-10-2018 IPR037923 Transcription regulator HTH-like CS348_13625 44cfa036ca90598059a463ab466dff56 99 Pfam PF00216 Bacterial DNA-binding protein 3 91 2.7E-30 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 4.6E-55 T 13-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 CS348_13625 44cfa036ca90598059a463ab466dff56 99 Gene3D G3DSA:4.10.520.10 1 99 1.7E-38 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.158 T 13-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 CS348_13625 44cfa036ca90598059a463ab466dff56 99 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 SMART SM00411 3 92 1.2E-43 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 SUPERFAMILY SSF47729 3 93 1.16E-31 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_13625 44cfa036ca90598059a463ab466dff56 99 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Gene3D G3DSA:3.40.120.10 2 147 1.2E-50 T 13-10-2018 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Gene3D G3DSA:3.40.120.10 172 253 1.8E-29 T 13-10-2018 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 SUPERFAMILY SSF53738 5 176 8.63E-39 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 121 2.1E-32 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 372 1.2E-25 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 SUPERFAMILY SSF55957 374 456 3.14E-19 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Gene3D G3DSA:3.30.310.50 374 456 3.4E-28 T 13-10-2018 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Gene3D G3DSA:3.40.120.10 255 371 1.0E-35 T 13-10-2018 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 SUPERFAMILY SSF53738 263 368 3.77E-33 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 SUPERFAMILY SSF53738 153 261 4.71E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 454 2.2E-11 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09235 d28b4e4a5ced4964e3ab37364901a311 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 153 258 1.5E-22 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 4 294 1.9E-154 T 13-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 Gene3D G3DSA:1.10.1040.10 166 296 5.2E-39 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 PIRSF PIRSF000103 1 295 6.3E-97 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 163 1.2E-50 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 1.7E-38 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 SUPERFAMILY SSF51735 2 164 1.97E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 Gene3D G3DSA:3.40.50.720 1 165 2.0E-60 T 13-10-2018 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 SUPERFAMILY SSF48179 164 293 8.84E-38 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 7 20 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CS348_02965 d4a8bf165391856eec8cd4ae10cfa543 296 Hamap MF_02032 2-hydroxy-3-oxopropionate reductase [garR]. 3 296 61.624 T 13-10-2018 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 CS348_23560 ddb0374a88338a8bd9f524f0d0ea6222 275 SUPERFAMILY SSF53639 1 270 1.29E-73 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_23560 ddb0374a88338a8bd9f524f0d0ea6222 275 TIGRFAM TIGR02624 rhamnu_1P_ald: rhamnulose-1-phosphate aldolase 1 271 5.1E-136 T 13-10-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 CS348_23560 ddb0374a88338a8bd9f524f0d0ea6222 275 SMART SM01007 11 239 4.8E-30 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_23560 ddb0374a88338a8bd9f524f0d0ea6222 275 Hamap MF_00770 Rhamnulose-1-phosphate aldolase [rhaD]. 1 272 58.116 T 13-10-2018 IPR013447 Rhamnulose-1-phosphate aldolase GO:0008994|GO:0019301 KEGG: 00040+4.1.2.19|KEGG: 00051+4.1.2.19 CS348_23560 ddb0374a88338a8bd9f524f0d0ea6222 275 Gene3D G3DSA:3.40.225.10 1 274 2.2E-90 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_23560 ddb0374a88338a8bd9f524f0d0ea6222 275 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 12 238 7.0E-35 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_10010 9e99a0d13de430d6bfdb030e3aa0b54e 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 6.4E-17 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CS348_10010 9e99a0d13de430d6bfdb030e3aa0b54e 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CS348_10010 9e99a0d13de430d6bfdb030e3aa0b54e 182 Gene3D G3DSA:1.20.120.1760 4 175 1.6E-14 T 13-10-2018 CS348_10010 9e99a0d13de430d6bfdb030e3aa0b54e 182 PIRSF PIRSF000847 1 178 7.5E-44 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CS348_10010 9e99a0d13de430d6bfdb030e3aa0b54e 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 34.684 T 13-10-2018 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CS348_10010 9e99a0d13de430d6bfdb030e3aa0b54e 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 181 1.7E-65 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 Pfam PF00326 Prolyl oligopeptidase family 463 675 6.1E-66 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 446 464 9.1E-54 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 588 603 9.1E-54 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 500 519 9.1E-54 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 550 9.1E-54 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 606 628 9.1E-54 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 472 496 9.1E-54 T 13-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 SUPERFAMILY SSF53474 414 655 1.81E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 Gene3D G3DSA:3.40.50.1820 21 673 3.7E-239 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 Gene3D G3DSA:2.130.10.120 72 405 3.7E-239 T 13-10-2018 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 403 2.2E-111 T 13-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 507 537 - T 13-10-2018 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 CS348_10355 9eeb6c9fd63be67f6ef175ee18e78f8a 683 SUPERFAMILY SSF50993 2 408 3.4E-81 T 13-10-2018 CS348_22320 0b521a9d5f7b33a79586ec780fd7b31f 229 Pfam PF04172 LrgB-like family 14 226 3.7E-67 T 13-10-2018 IPR007300 CidB/LrgB family CS348_16800 f4a5b937e5a6dfc65354c8fad2b85fa5 308 Gene3D G3DSA:3.40.190.290 91 296 3.6E-35 T 13-10-2018 CS348_16800 f4a5b937e5a6dfc65354c8fad2b85fa5 308 Pfam PF03466 LysR substrate binding domain 86 282 1.5E-34 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_16800 f4a5b937e5a6dfc65354c8fad2b85fa5 308 Gene3D G3DSA:1.10.10.10 1 90 4.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16800 f4a5b937e5a6dfc65354c8fad2b85fa5 308 SUPERFAMILY SSF53850 87 294 3.88E-35 T 13-10-2018 CS348_16800 f4a5b937e5a6dfc65354c8fad2b85fa5 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.9E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_16800 f4a5b937e5a6dfc65354c8fad2b85fa5 308 SUPERFAMILY SSF46785 1 84 2.95E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_07855 14f4f80d4475b6373bd39e5d91013f33 189 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 36.763 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like CS348_07855 14f4f80d4475b6373bd39e5d91013f33 189 Gene3D G3DSA:3.40.50.1950 2 189 6.9E-77 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CS348_07855 14f4f80d4475b6373bd39e5d91013f33 189 SUPERFAMILY SSF52507 2 188 2.62E-59 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CS348_07855 14f4f80d4475b6373bd39e5d91013f33 189 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 2.2E-67 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like CS348_07855 14f4f80d4475b6373bd39e5d91013f33 189 Pfam PF02441 Flavoprotein 2 165 3.1E-23 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 Pfam PF03466 LysR substrate binding domain 90 293 5.2E-43 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 SUPERFAMILY SSF53850 90 297 1.04E-42 T 13-10-2018 CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 Gene3D G3DSA:1.10.10.10 1 84 3.8E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.1E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 SUPERFAMILY SSF46785 3 113 2.6E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_07450 746c1fcfe593c6d3c7dd30f4768f056c 308 Gene3D G3DSA:3.40.190.290 92 301 3.3E-47 T 13-10-2018 CS348_24520 5a5198eef6680c26f452f73f8b5c17b2 585 Gene3D G3DSA:3.40.190.10 117 324 1.5E-33 T 13-10-2018 CS348_24520 5a5198eef6680c26f452f73f8b5c17b2 585 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 309 1.3E-21 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_24520 5a5198eef6680c26f452f73f8b5c17b2 585 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 4.2E-40 T 13-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain CS348_24520 5a5198eef6680c26f452f73f8b5c17b2 585 SUPERFAMILY SSF53850 121 583 3.94E-59 T 13-10-2018 CS348_08150 dea306d562d0794499d019b628d2c821 660 SUPERFAMILY SSF51735 317 651 1.67E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_08150 dea306d562d0794499d019b628d2c821 660 PIRSF PIRSF036506 1 660 0.0 T 13-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 CS348_08150 dea306d562d0794499d019b628d2c821 660 Pfam PF02911 Formyl transferase, C-terminal domain 203 294 1.0E-17 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_08150 dea306d562d0794499d019b628d2c821 660 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 63.935 T 13-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 CS348_08150 dea306d562d0794499d019b628d2c821 660 Gene3D G3DSA:3.40.50.720 314 660 1.4E-125 T 13-10-2018 CS348_08150 dea306d562d0794499d019b628d2c821 660 SUPERFAMILY SSF53328 1 202 9.68E-54 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_08150 dea306d562d0794499d019b628d2c821 660 Gene3D G3DSA:3.40.50.12230 1 304 2.4E-107 T 13-10-2018 CS348_08150 dea306d562d0794499d019b628d2c821 660 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 1.6E-45 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_08150 dea306d562d0794499d019b628d2c821 660 Pfam PF00551 Formyl transferase 53 173 1.9E-22 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_08150 dea306d562d0794499d019b628d2c821 660 SUPERFAMILY SSF50486 204 304 1.46E-23 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 CS348_21670 49cba68be5eeecf090e5765c8dd0796f 91 Pfam PF07338 Protein of unknown function (DUF1471) 36 91 2.8E-17 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_21670 49cba68be5eeecf090e5765c8dd0796f 91 SUPERFAMILY SSF159871 2 91 9.68E-22 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_21670 49cba68be5eeecf090e5765c8dd0796f 91 Gene3D G3DSA:3.30.1660.10 19 91 1.2E-21 T 13-10-2018 IPR025543 Dodecin-like CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.20.25.490 1383 1440 6.2E-15 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.20.25.490 1014 1070 3.7E-5 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 706 902 1.83E-31 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:3.30.1300.30 1581 1679 6.1E-31 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:3.30.390.90 1188 1227 9.8E-12 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:3.30.390.90 1443 1470 1.9E-6 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:3.30.390.90 963 1002 9.8E-12 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 188 311 1.37E-14 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF54523 1580 1679 5.02E-25 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:1.20.5.170 881 915 2.5E-9 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.150.10.10 182 283 6.9E-16 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.150.10.10 23 181 6.4E-9 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 958 1019 1.14E-8 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF03895 YadA-like membrane anchor domain 1620 1679 4.2E-16 T 13-10-2018 IPR005594 YadA-like, C-terminal CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.150.10.10 1245 1347 7.8E-6 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.150.10.10 365 525 2.9E-13 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 1372 1489 7.72E-5 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 53 179 3.27E-5 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:1.20.5.170 1095 1119 1.9E-8 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1223 1262 7.3E-8 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1320 1362 5.5E-7 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 998 1036 3.7E-7 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1465 1489 1.3E-5 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1569 1607 0.0018 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 878 915 5.2E-10 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05662 Coiled stalk of trimeric autotransporter adhesin 1088 1128 3.5E-7 T 13-10-2018 IPR008635 Coiled stalk of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Gene3D G3DSA:2.150.10.10 740 880 4.1E-36 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 374 507 1.57E-9 T 13-10-2018 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05658 Head domain of trimeric autotransporter adhesin 420 444 4.3E-4 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05658 Head domain of trimeric autotransporter adhesin 714 739 2.5E-4 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 Pfam PF05658 Head domain of trimeric autotransporter adhesin 188 212 1.2E-5 T 13-10-2018 IPR008640 Head domain of trimeric autotransporter adhesin GO:0009405|GO:0019867 CS348_25205 e9903d17365a7312c12c5bcc0926a937 1679 SUPERFAMILY SSF101967 1182 1244 1.57E-8 T 13-10-2018 CS348_10045 d9c6b9877b78aa206a15e3b8e074d656 221 SUPERFAMILY SSF103642 200 220 6.05E-8 T 13-10-2018 CS348_10045 d9c6b9877b78aa206a15e3b8e074d656 221 Pfam PF03695 Uncharacterised protein family (UPF0149) 12 183 7.4E-34 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CS348_10045 d9c6b9877b78aa206a15e3b8e074d656 221 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 10 182 2.3E-50 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CS348_10045 d9c6b9877b78aa206a15e3b8e074d656 221 Pfam PF02810 SEC-C motif 203 220 1.8E-10 T 13-10-2018 IPR004027 SEC-C motif CS348_10045 d9c6b9877b78aa206a15e3b8e074d656 221 SUPERFAMILY SSF101327 14 181 1.16E-22 T 13-10-2018 IPR036255 YgfB-like superfamily CS348_10045 d9c6b9877b78aa206a15e3b8e074d656 221 Gene3D G3DSA:3.10.450.50 170 221 2.5E-10 T 13-10-2018 CS348_18170 e672a37e2792f1ef5cf6d030164c0216 204 Pfam PF00510 Cytochrome c oxidase subunit III 16 202 1.5E-15 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18170 e672a37e2792f1ef5cf6d030164c0216 204 Gene3D G3DSA:1.20.120.80 19 204 7.8E-64 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18170 e672a37e2792f1ef5cf6d030164c0216 204 SUPERFAMILY SSF81452 10 202 6.02E-60 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18170 e672a37e2792f1ef5cf6d030164c0216 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 5.0E-89 T 13-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 CS348_11705 d74aced926549aea56f41fc6493a6490 144 PRINTS PR01438 Universal stress protein signature 105 117 5.8E-10 T 13-10-2018 IPR006015 Universal stress protein A CS348_11705 d74aced926549aea56f41fc6493a6490 144 PRINTS PR01438 Universal stress protein signature 2 20 5.8E-10 T 13-10-2018 IPR006015 Universal stress protein A CS348_11705 d74aced926549aea56f41fc6493a6490 144 PRINTS PR01438 Universal stress protein signature 122 144 5.8E-10 T 13-10-2018 IPR006015 Universal stress protein A CS348_11705 d74aced926549aea56f41fc6493a6490 144 Pfam PF00582 Universal stress protein family 1 144 2.1E-29 T 13-10-2018 IPR006016 UspA CS348_11705 d74aced926549aea56f41fc6493a6490 144 SUPERFAMILY SSF52402 3 144 9.21E-31 T 13-10-2018 CS348_11705 d74aced926549aea56f41fc6493a6490 144 Gene3D G3DSA:3.40.50.620 1 144 2.0E-45 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_04835 9c9ff96b51e680be2e5caeb6e0e1ebcd 193 Pfam PF00419 Fimbrial protein 36 192 1.0E-21 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_04835 9c9ff96b51e680be2e5caeb6e0e1ebcd 193 Gene3D G3DSA:2.60.40.1090 35 192 1.5E-39 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_04835 9c9ff96b51e680be2e5caeb6e0e1ebcd 193 SUPERFAMILY SSF49401 35 192 4.52E-34 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 SUPERFAMILY SSF52922 532 664 8.25E-44 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 TIGRFAM TIGR00232 tktlase_bact: transketolase 4 663 0.0 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 3 333 1.7E-171 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 Pfam PF02780 Transketolase, C-terminal domain 543 654 5.1E-19 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 Gene3D G3DSA:3.40.50.970 326 536 4.8E-83 T 13-10-2018 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 SMART SM00861 354 524 8.9E-67 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 Pfam PF02779 Transketolase, pyrimidine binding domain 353 523 5.4E-46 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 Gene3D G3DSA:3.40.50.970 2 325 6.6E-134 T 13-10-2018 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 ProSitePatterns PS00801 Transketolase signature 1. 11 31 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 SUPERFAMILY SSF52518 4 320 5.09E-120 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 ProSitePatterns PS00802 Transketolase signature 2. 466 482 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 Gene3D G3DSA:3.40.50.920 537 664 7.6E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_07210 345235c2e04e53be9e68d0ffe8ab72e1 666 SUPERFAMILY SSF52518 334 525 2.5E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 Pfam PF01614 Bacterial transcriptional regulator 122 247 6.7E-40 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 SUPERFAMILY SSF55781 72 251 1.9E-47 T 13-10-2018 CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 SUPERFAMILY SSF46785 7 79 6.34E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 Gene3D G3DSA:1.10.10.10 2 76 4.0E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 Gene3D G3DSA:3.30.450.40 77 257 9.3E-52 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 Pfam PF09339 IclR helix-turn-helix domain 9 58 2.3E-6 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_08185 7d5fef4ea33d376eda3247686d2451e3 260 SMART SM00346 7 95 1.1E-32 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_18120 04c226654104c66246b693e94ef653c6 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.657 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CS348_18120 04c226654104c66246b693e94ef653c6 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 395 2.8E-17 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_18120 04c226654104c66246b693e94ef653c6 423 SMART SM00994 12 51 1.0E-24 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CS348_18120 04c226654104c66246b693e94ef653c6 423 SMART SM01086 317 412 2.6E-35 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_18120 04c226654104c66246b693e94ef653c6 423 Gene3D G3DSA:3.30.50.30 2 52 9.3E-28 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily CS348_18120 04c226654104c66246b693e94ef653c6 423 SUPERFAMILY SSF52540 64 402 3.69E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18120 04c226654104c66246b693e94ef653c6 423 Gene3D G3DSA:3.40.50.300 62 315 1.9E-110 T 13-10-2018 CS348_18120 04c226654104c66246b693e94ef653c6 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 13-10-2018 CS348_18120 04c226654104c66246b693e94ef653c6 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 3.0E-216 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CS348_18120 04c226654104c66246b693e94ef653c6 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 1.0E-48 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_18120 04c226654104c66246b693e94ef653c6 423 Gene3D G3DSA:1.10.8.60 316 423 1.2E-42 T 13-10-2018 CS348_18120 04c226654104c66246b693e94ef653c6 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CS348_18120 04c226654104c66246b693e94ef653c6 423 SMART SM00382 111 333 1.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_00240 e354f63c43e502cb52fe3b8b917bd241 337 Gene3D G3DSA:2.70.98.80 14 337 1.9E-14 T 13-10-2018 CS348_00240 e354f63c43e502cb52fe3b8b917bd241 337 SUPERFAMILY SSF74650 39 334 3.3E-7 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_00240 e354f63c43e502cb52fe3b8b917bd241 337 Pfam PF14486 Domain of unknown function (DUF4432) 34 335 6.6E-14 T 13-10-2018 IPR027839 Protein of unknown function DUF4432 CS348_12185 6a8bec5ba80bc50ab78858802d32cdba 143 SUPERFAMILY SSF82784 1 141 3.93E-41 T 13-10-2018 IPR036102 OsmC/Ohr superfamily CS348_12185 6a8bec5ba80bc50ab78858802d32cdba 143 Gene3D G3DSA:3.30.300.20 1 142 7.5E-47 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_12185 6a8bec5ba80bc50ab78858802d32cdba 143 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 5 138 1.5E-60 T 13-10-2018 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 CS348_12185 6a8bec5ba80bc50ab78858802d32cdba 143 Pfam PF02566 OsmC-like protein 43 138 2.8E-18 T 13-10-2018 IPR003718 OsmC/Ohr family CS348_22515 b816cff7088f8902911e95bd8a4ebdab 122 Gene3D G3DSA:1.10.3830.10 2 122 1.1E-44 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CS348_22515 b816cff7088f8902911e95bd8a4ebdab 122 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CS348_22515 b816cff7088f8902911e95bd8a4ebdab 122 Pfam PF01219 Prokaryotic diacylglycerol kinase 16 117 8.9E-35 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.1E-14 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Gene3D G3DSA:3.30.930.10 223 531 3.4E-128 T 13-10-2018 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 SMART SM00863 170 219 1.4E-19 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Gene3D G3DSA:3.30.54.20 130 187 3.0E-63 T 13-10-2018 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Gene3D G3DSA:3.40.50.800 532 642 5.2E-34 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 8.1E-55 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 8.1E-55 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 8.1E-55 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 8.1E-55 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 8.1E-55 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Pfam PF02824 TGS domain 4 61 5.6E-13 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 SUPERFAMILY SSF81271 3 61 1.21E-16 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 SUPERFAMILY SSF55186 63 241 4.06E-65 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 528 4.4E-51 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 7.2E-248 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 SUPERFAMILY SSF52954 530 636 6.64E-34 T 13-10-2018 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 SUPERFAMILY SSF55681 243 525 7.88E-97 T 13-10-2018 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Gene3D G3DSA:3.30.980.10 69 222 3.0E-63 T 13-10-2018 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Gene3D G3DSA:3.10.20.30 1 64 5.2E-23 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 34.243 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CS348_13655 0abbf36880add45473ac46b7a3674bb3 642 Pfam PF03129 Anticodon binding domain 541 630 4.8E-23 T 13-10-2018 IPR004154 Anticodon-binding CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 2.3E-103 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.673 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 SUPERFAMILY SSF54506 2 273 6.13E-55 T 13-10-2018 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 Gene3D G3DSA:3.10.310.10 3 270 2.1E-108 T 13-10-2018 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 Pfam PF01678 Diaminopimelate epimerase 3 123 9.5E-35 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 Pfam PF01678 Diaminopimelate epimerase 152 266 7.0E-33 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CS348_24075 b9b1d49f02ad792151e2fd367e862bc2 274 Gene3D G3DSA:3.10.310.10 115 261 2.1E-108 T 13-10-2018 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 Gene3D G3DSA:3.30.1390.10 51 121 2.0E-32 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CS348_22840 fb72a108246294bbbcecb34a7d778729 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 6.0E-18 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 1.1E-48 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 3.8E-31 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.574 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 8.0E-28 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 SUPERFAMILY SSF48300 3 57 1.57E-16 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22840 fb72a108246294bbbcecb34a7d778729 121 SUPERFAMILY SSF54736 50 121 3.84E-25 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CS348_22840 fb72a108246294bbbcecb34a7d778729 121 Gene3D G3DSA:1.20.5.710 2 50 2.4E-27 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 Gene3D G3DSA:3.40.30.120 366 495 2.3E-13 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 Pfam PF01494 FAD binding domain 7 345 1.2E-82 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 SUPERFAMILY SSF51905 7 352 7.78E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 SUPERFAMILY SSF52833 378 500 1.61E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 7.4E-37 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 349 7.4E-37 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 298 314 7.4E-37 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 7.4E-37 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 7.4E-37 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 Gene3D G3DSA:3.30.70.2450 188 272 3.3E-101 T 13-10-2018 CS348_12305 abdce40a2e1d2739cd527e80d61b1b20 502 Gene3D G3DSA:3.50.50.60 8 345 3.3E-101 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 SMART SM00448 1 112 7.0E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 217 1.2E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 Pfam PF00072 Response regulator receiver domain 4 112 2.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 SMART SM00862 144 217 6.1E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 Gene3D G3DSA:1.10.10.10 135 222 1.6E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 SUPERFAMILY SSF46894 125 218 2.47E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 Gene3D G3DSA:3.40.50.2300 1 121 4.0E-38 T 13-10-2018 CS348_06160 9d5daa7b2da3e53de902a76efd7e8426 224 SUPERFAMILY SSF52172 1 132 5.27E-38 T 13-10-2018 IPR011006 CheY-like superfamily CS348_18465 6870169d07202929a0026e7ac73e9854 237 Pfam PF06904 Extensin-like protein C-terminus 64 237 1.5E-54 T 13-10-2018 IPR009683 Extensin-like, C-terminal CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 Gene3D G3DSA:3.40.50.720 7 268 3.1E-106 T 13-10-2018 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 Gene3D G3DSA:3.30.360.10 131 238 3.1E-106 T 13-10-2018 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 SUPERFAMILY SSF51735 5 271 2.37E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 1.6E-42 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 269 5.2E-110 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 PIRSF PIRSF000161 4 271 9.6E-91 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 1.5E-42 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 35.147 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_20040 781aa85a3828a05a5301be5cb22751dc 273 SUPERFAMILY SSF55347 131 240 4.14E-37 T 13-10-2018 CS348_24615 7ca26d1b3d0e58aa0aad5c910400d8c0 284 SMART SM00342 190 273 1.1E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_24615 7ca26d1b3d0e58aa0aad5c910400d8c0 284 Pfam PF12833 Helix-turn-helix domain 200 274 4.5E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_24615 7ca26d1b3d0e58aa0aad5c910400d8c0 284 Gene3D G3DSA:1.10.10.60 171 283 2.9E-21 T 13-10-2018 CS348_24615 7ca26d1b3d0e58aa0aad5c910400d8c0 284 SUPERFAMILY SSF46689 226 274 4.48E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_24615 7ca26d1b3d0e58aa0aad5c910400d8c0 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 227 269 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_02370 0920f82c944a8b3a20badffe13669ecc 197 Pfam PF02545 Maf-like protein 4 184 3.7E-59 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_02370 0920f82c944a8b3a20badffe13669ecc 197 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 32.39 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_02370 0920f82c944a8b3a20badffe13669ecc 197 PIRSF PIRSF006305 1 191 4.7E-57 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_02370 0920f82c944a8b3a20badffe13669ecc 197 SUPERFAMILY SSF52972 2 184 1.11E-63 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_02370 0920f82c944a8b3a20badffe13669ecc 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 5.6E-70 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_02370 0920f82c944a8b3a20badffe13669ecc 197 Gene3D G3DSA:3.90.950.10 2 190 1.8E-77 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 SUPERFAMILY SSF53850 96 289 1.28E-29 T 13-10-2018 CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 Gene3D G3DSA:3.40.190.10 169 262 4.4E-55 T 13-10-2018 CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 SUPERFAMILY SSF46785 9 90 2.39E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 Gene3D G3DSA:3.40.190.10 103 269 4.4E-55 T 13-10-2018 CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 7.6E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 Pfam PF03466 LysR substrate binding domain 97 275 1.5E-29 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 Gene3D G3DSA:1.10.10.10 8 92 1.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 2.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 2.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08000 cefa27c2293f11f9485d270d2ffd15d6 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 2.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_09475 ff1762c87963bdbcffae0b4dbe898c85 94 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 48 7.0E-20 T 13-10-2018 CS348_09475 ff1762c87963bdbcffae0b4dbe898c85 94 Pfam PF00936 BMC domain 5 80 1.3E-28 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09475 ff1762c87963bdbcffae0b4dbe898c85 94 Gene3D G3DSA:3.30.70.1710 1 94 1.3E-42 T 13-10-2018 CS348_09475 ff1762c87963bdbcffae0b4dbe898c85 94 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 22 41 - T 13-10-2018 IPR020808 Bacterial microcompartments protein, conserved site CS348_09475 ff1762c87963bdbcffae0b4dbe898c85 94 SMART SM00877 4 80 5.4E-36 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09475 ff1762c87963bdbcffae0b4dbe898c85 94 SUPERFAMILY SSF143414 4 90 5.62E-32 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09460 49d65fbaf902d4f5cc3df7b6920285a2 224 PIRSF PIRSF018506 1 224 1.3E-111 T 13-10-2018 IPR025541 Propanediol/glycerol dehydratase, medium subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 CS348_09460 49d65fbaf902d4f5cc3df7b6920285a2 224 Gene3D G3DSA:3.40.50.10150 46 224 5.4E-92 T 13-10-2018 IPR010254 B12-dependent dehydratases, beta subunit CS348_09460 49d65fbaf902d4f5cc3df7b6920285a2 224 Pfam PF02288 Dehydratase medium subunit 69 181 1.4E-34 T 13-10-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor CS348_09460 49d65fbaf902d4f5cc3df7b6920285a2 224 SUPERFAMILY SSF52968 47 224 6.15E-72 T 13-10-2018 IPR010254 B12-dependent dehydratases, beta subunit CS348_04350 87c5793bbc08373bd1ed796d3b796c2c 497 Gene3D G3DSA:3.40.50.300 4 238 5.9E-28 T 13-10-2018 CS348_04350 87c5793bbc08373bd1ed796d3b796c2c 497 Pfam PF13245 AAA domain 10 226 3.5E-12 T 13-10-2018 CS348_04350 87c5793bbc08373bd1ed796d3b796c2c 497 Gene3D G3DSA:3.40.50.300 247 459 1.4E-12 T 13-10-2018 CS348_04350 87c5793bbc08373bd1ed796d3b796c2c 497 Pfam PF13361 UvrD-like helicase C-terminal domain 360 458 6.0E-10 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CS348_04350 87c5793bbc08373bd1ed796d3b796c2c 497 SUPERFAMILY SSF52540 6 458 5.94E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18015 c0f48259b84e58c1c4212db0ec98ccf9 46 SUPERFAMILY SSF57840 8 41 1.44E-13 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18015 c0f48259b84e58c1c4212db0ec98ccf9 46 Pfam PF00444 Ribosomal protein L36 1 41 5.9E-16 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18015 c0f48259b84e58c1c4212db0ec98ccf9 46 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18015 c0f48259b84e58c1c4212db0ec98ccf9 46 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.419 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18015 c0f48259b84e58c1c4212db0ec98ccf9 46 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 11 41 2.8E-8 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22845 6a330b20e40b91de1079b178da95a650 165 Pfam PF00466 Ribosomal protein L10 5 101 3.7E-25 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 CS348_22845 6a330b20e40b91de1079b178da95a650 165 Gene3D G3DSA:3.30.70.1730 1 126 6.5E-35 T 13-10-2018 CS348_22845 6a330b20e40b91de1079b178da95a650 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_22845 6a330b20e40b91de1079b178da95a650 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.51 T 13-10-2018 IPR022973 Ribosomal protein L10 CS348_22845 6a330b20e40b91de1079b178da95a650 165 SUPERFAMILY SSF160369 4 160 3.92E-47 T 13-10-2018 CS348_22845 6a330b20e40b91de1079b178da95a650 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 161 1.0E-4 T 13-10-2018 CS348_15280 e2d1545fbf38f6a5d0293a0d61925f68 297 Pfam PF01636 Phosphotransferase enzyme family 64 238 1.2E-5 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CS348_15280 e2d1545fbf38f6a5d0293a0d61925f68 297 Gene3D G3DSA:3.90.1200.10 108 292 2.1E-7 T 13-10-2018 CS348_15280 e2d1545fbf38f6a5d0293a0d61925f68 297 SUPERFAMILY SSF56112 3 270 2.14E-26 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_03275 dbe37861923814a218c0427534cb085c 223 PIRSF PIRSF001488 1 223 2.3E-26 T 13-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL CS348_03275 dbe37861923814a218c0427534cb085c 223 Pfam PF01323 DSBA-like thioredoxin domain 48 201 7.5E-11 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CS348_03275 dbe37861923814a218c0427534cb085c 223 Gene3D G3DSA:3.40.30.10 24 223 9.9E-57 T 13-10-2018 CS348_03275 dbe37861923814a218c0427534cb085c 223 Hamap MF_00932 Thiol:disulfide interchange protein DsbL [dsbL]. 1 222 62.403 T 13-10-2018 IPR028588 Thiol:disulfide interchange protein DsbL CS348_03275 dbe37861923814a218c0427534cb085c 223 SUPERFAMILY SSF52833 28 219 1.23E-26 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 Hamap MF_01313 Nitric oxide reductase FlRd-NAD(+) reductase [norW]. 1 377 57.304 T 13-10-2018 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase GO:0016731|GO:0055114 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 Gene3D G3DSA:3.50.50.60 6 276 1.1E-78 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 278 5.6E-52 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 268 275 4.4E-14 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 229 243 4.4E-14 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 4.4E-14 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 4.4E-14 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 Gene3D G3DSA:3.50.50.60 108 240 1.1E-78 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 2.3E-20 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 2.3E-20 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.3E-20 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 2.3E-20 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 275 2.3E-20 T 13-10-2018 CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 SUPERFAMILY SSF51905 3 301 1.98E-36 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_05830 e8752c163c3578b888bec26bd5ffabd0 377 Gene3D G3DSA:3.30.390.120 313 375 2.4E-5 T 13-10-2018 CS348_17710 f414afe0ecdad435f8624497ad629136 870 SUPERFAMILY SSF141729 37 166 1.44E-34 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_17710 f414afe0ecdad435f8624497ad629136 870 Gene3D G3DSA:2.60.40.3110 272 361 6.2E-37 T 13-10-2018 CS348_17710 f414afe0ecdad435f8624497ad629136 870 Pfam PF13954 PapC N-terminal domain 39 188 2.8E-49 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_17710 f414afe0ecdad435f8624497ad629136 870 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 314 324 - T 13-10-2018 IPR018030 Fimbrial membrane usher, conserved site CS348_17710 f414afe0ecdad435f8624497ad629136 870 Gene3D G3DSA:3.10.20.410 37 166 2.2E-40 T 13-10-2018 CS348_17710 f414afe0ecdad435f8624497ad629136 870 Pfam PF00577 Outer membrane usher protein 200 778 4.3E-226 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_17710 f414afe0ecdad435f8624497ad629136 870 Pfam PF13953 PapC C-terminal domain 788 850 5.7E-20 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_17710 f414afe0ecdad435f8624497ad629136 870 Gene3D G3DSA:2.60.40.2070 784 869 4.4E-23 T 13-10-2018 CS348_17710 f414afe0ecdad435f8624497ad629136 870 Gene3D G3DSA:2.60.40.2610 693 783 4.2E-36 T 13-10-2018 CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 Gene3D G3DSA:2.160.20.70 126 235 1.7E-28 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 103 4.7E-36 T 13-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 SUPERFAMILY SSF63848 129 234 1.23E-30 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 234 5.7E-69 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 Gene3D G3DSA:3.30.750.120 1 115 8.4E-47 T 13-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 132 231 4.8E-30 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 CS348_10750 cebbb51ecf1e9e9c46b9a434eb975236 235 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 235 29.248 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CS348_05255 29d48efebb8e589b859896c012c36c6f 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.554 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CS348_05255 29d48efebb8e589b859896c012c36c6f 545 Gene3D G3DSA:3.40.50.300 1 285 1.5E-136 T 13-10-2018 CS348_05255 29d48efebb8e589b859896c012c36c6f 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 8.9E-267 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CS348_05255 29d48efebb8e589b859896c012c36c6f 545 SUPERFAMILY SSF52317 289 542 6.02E-89 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_05255 29d48efebb8e589b859896c012c36c6f 545 Pfam PF06418 CTP synthase N-terminus 5 266 9.9E-126 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CS348_05255 29d48efebb8e589b859896c012c36c6f 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 2.1E-65 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_05255 29d48efebb8e589b859896c012c36c6f 545 SUPERFAMILY SSF52540 3 269 3.32E-122 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05255 29d48efebb8e589b859896c012c36c6f 545 Gene3D G3DSA:3.40.50.880 286 545 3.5E-109 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 1.5E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.5E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.5E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 191 6.5E-4 T 13-10-2018 CS348_07345 67df10326e155c92b1003fae83b08371 263 SUPERFAMILY SSF51735 6 255 9.87E-88 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07345 67df10326e155c92b1003fae83b08371 263 Gene3D G3DSA:3.40.50.720 1 260 7.7E-91 T 13-10-2018 CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_07345 67df10326e155c92b1003fae83b08371 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 254 2.5E-72 T 13-10-2018 CS348_08830 1ee65cb233094c6ec04ca9524012031f 315 SUPERFAMILY SSF52540 1 239 2.13E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08830 1ee65cb233094c6ec04ca9524012031f 315 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_08830 1ee65cb233094c6ec04ca9524012031f 315 SMART SM00382 26 212 2.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_08830 1ee65cb233094c6ec04ca9524012031f 315 Gene3D G3DSA:3.40.50.300 1 282 1.4E-72 T 13-10-2018 CS348_08830 1ee65cb233094c6ec04ca9524012031f 315 SUPERFAMILY SSF54631 267 306 5.9E-6 T 13-10-2018 CS348_08830 1ee65cb233094c6ec04ca9524012031f 315 Pfam PF00005 ABC transporter 18 162 4.3E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_08720 db1252c8fdc665a162688317fb251783 239 PIRSF PIRSF005011 1 239 5.7E-154 T 13-10-2018 IPR023604 Uncharacterised protein family SanA CS348_08720 db1252c8fdc665a162688317fb251783 239 Pfam PF02698 DUF218 domain 48 172 1.7E-17 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Hamap MF_01961 Catalase-peroxidase [katG]. 11 726 39.471 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 ProSitePatterns PS00436 Peroxidases active site signature. 97 108 - T 13-10-2018 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Gene3D G3DSA:1.10.420.10 578 701 1.1E-140 T 13-10-2018 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 479 505 2.0E-51 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 74 99 2.0E-51 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 59 72 2.0E-51 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 2.0E-51 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 33 55 2.0E-51 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 259 269 - T 13-10-2018 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Gene3D G3DSA:1.10.520.10 27 430 1.5E-208 T 13-10-2018 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 1.3E-18 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 1.3E-18 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00458 Haem peroxidase superfamily signature 157 174 1.3E-18 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00458 Haem peroxidase superfamily signature 97 111 1.3E-18 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 PRINTS PR00458 Haem peroxidase superfamily signature 175 187 1.3E-18 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Gene3D G3DSA:1.10.520.10 431 725 1.1E-140 T 13-10-2018 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Gene3D G3DSA:1.10.420.20 198 397 1.5E-208 T 13-10-2018 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Pfam PF00141 Peroxidase 403 699 9.5E-36 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 Pfam PF00141 Peroxidase 91 396 1.4E-47 T 13-10-2018 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 SUPERFAMILY SSF48113 29 429 3.83E-139 T 13-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 SUPERFAMILY SSF48113 435 725 1.3E-105 T 13-10-2018 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 CS348_23050 f689ee62a67fea202c7a997bc26afa3d 726 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 18 726 0.0 T 13-10-2018 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|KEGG: 00983+1.11.1.21|MetaCyc: PWY-5506 CS348_12220 f1ddce461b1a34413ed1e416f8f1f833 842 Pfam PF00128 Alpha amylase, catalytic domain 25 111 1.6E-18 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_12220 f1ddce461b1a34413ed1e416f8f1f833 842 SUPERFAMILY SSF51445 2 742 7.65E-128 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_12220 f1ddce461b1a34413ed1e416f8f1f833 842 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 3 839 0.0 T 13-10-2018 IPR012767 Maltooligosyl trehalose synthase KEGG: 00500+5.4.99.15|MetaCyc: PWY-2661 CS348_12220 f1ddce461b1a34413ed1e416f8f1f833 842 SMART SM00642 4 735 2.6E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 SUPERFAMILY SSF46785 5 87 2.6E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.0E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 Gene3D G3DSA:3.40.190.10 94 295 7.3E-61 T 13-10-2018 CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 Pfam PF03466 LysR substrate binding domain 91 296 1.6E-39 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 SUPERFAMILY SSF53850 91 301 1.1E-40 T 13-10-2018 CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 Gene3D G3DSA:1.10.10.10 4 93 1.6E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_15460 e6f0a032371f892ec8a7039824ceb2c9 303 Gene3D G3DSA:3.40.190.10 167 268 7.3E-61 T 13-10-2018 CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 Gene3D G3DSA:3.30.420.240 400 568 1.5E-9 T 13-10-2018 CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 SUPERFAMILY SSF46689 6 43 7.17E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 Gene3D G3DSA:1.10.10.60 2 46 3.9E-5 T 13-10-2018 CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 Pfam PF17289 Terminase RNaseH-like domain 407 567 9.4E-27 T 13-10-2018 IPR035421 Terminase, large subunit gp17-like CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 7 63 8.8E-26 T 13-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 Pfam PF03237 Terminase-like family 151 375 5.9E-48 T 13-10-2018 IPR004921 Terminase large subunit, T4likevirus-type CS348_13490 8c956c05060ec0c03f7dc872e58608f1 584 Gene3D G3DSA:3.40.50.300 82 298 3.3E-20 T 13-10-2018 CS348_03530 f5bd1a6a338508b90cc74016a3d1a0d3 95 ProDom PD065638 YGHW CYTOPLASMIC STY3323 1 94 1.0E-50 T 13-10-2018 IPR022574 Protein of unknown function DUF2623 CS348_03530 f5bd1a6a338508b90cc74016a3d1a0d3 95 Pfam PF11115 Protein of unknown function (DUF2623) 1 92 8.6E-43 T 13-10-2018 IPR022574 Protein of unknown function DUF2623 CS348_04435 15412a0f2e85e583308e53658dbb3508 378 SMART SM00729 6 223 7.6E-56 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_04435 15412a0f2e85e583308e53658dbb3508 378 Pfam PF04055 Radical SAM superfamily 11 178 2.4E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_04435 15412a0f2e85e583308e53658dbb3508 378 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 5.1E-140 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 CS348_04435 15412a0f2e85e583308e53658dbb3508 378 Gene3D G3DSA:3.80.30.20 1 297 2.4E-98 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_04435 15412a0f2e85e583308e53658dbb3508 378 Pfam PF06969 HemN C-terminal domain 303 364 1.6E-8 T 13-10-2018 IPR010723 HemN, C-terminal CS348_04435 15412a0f2e85e583308e53658dbb3508 378 SUPERFAMILY SSF102114 5 376 1.05E-110 T 13-10-2018 CS348_07565 80956ed7c72a25b4b89a024bf375a563 304 Pfam PF10124 Mu-like prophage major head subunit gpT 10 303 1.3E-94 T 13-10-2018 IPR018774 Bacteriophage Mu, GpT CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 SUPERFAMILY SSF55804 511 648 1.74E-26 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 SUPERFAMILY SSF63520 204 300 1.31E-6 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 530 646 5.2E-19 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Gene3D G3DSA:1.10.10.10 11 85 3.5E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Gene3D G3DSA:3.40.930.10 518 650 4.5E-18 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 SUPERFAMILY SSF52794 422 499 9.94E-5 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Gene3D G3DSA:1.10.1790.10 315 410 1.2E-16 T 13-10-2018 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 560 576 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Pfam PF00874 PRD domain 321 407 5.5E-20 T 13-10-2018 IPR011608 PRD domain GO:0006355 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Pfam PF00874 PRD domain 215 298 1.1E-7 T 13-10-2018 IPR011608 PRD domain GO:0006355 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Pfam PF08279 HTH domain 27 83 9.4E-11 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 ProSitePatterns PS00894 DeoR-type HTH domain signature. 27 60 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 SUPERFAMILY SSF63520 313 412 8.89E-23 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_21365 8abdb7e9e39c68734f021f6f4ad4c87e 657 Pfam PF05043 Mga helix-turn-helix domain 110 186 4.2E-11 T 13-10-2018 IPR007737 Mga helix-turn-helix domain CS348_16395 a1b1f9a8c1e1d916396fffe2a5c5f320 313 Pfam PF00491 Arginase family 45 308 4.0E-52 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 CS348_16395 a1b1f9a8c1e1d916396fffe2a5c5f320 313 PIRSF PIRSF036979 23 312 2.9E-27 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 CS348_16395 a1b1f9a8c1e1d916396fffe2a5c5f320 313 TIGRFAM TIGR01227 hutG: formimidoylglutamase 12 308 9.9E-82 T 13-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 CS348_16395 a1b1f9a8c1e1d916396fffe2a5c5f320 313 Hamap MF_00737 Formimidoylglutamase [hutG]. 7 310 41.871 T 13-10-2018 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 CS348_16395 a1b1f9a8c1e1d916396fffe2a5c5f320 313 Gene3D G3DSA:3.40.800.10 6 312 1.8E-99 T 13-10-2018 CS348_16395 a1b1f9a8c1e1d916396fffe2a5c5f320 313 SUPERFAMILY SSF52768 11 312 3.42E-78 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Gene3D G3DSA:1.10.3810.10 56 250 1.7E-80 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 SUPERFAMILY SSF53955 51 265 2.08E-81 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Pfam PF00905 Penicillin binding protein transpeptidase domain 437 616 1.6E-24 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Gene3D G3DSA:3.40.710.10 627 845 3.2E-23 T 13-10-2018 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Gene3D G3DSA:3.40.710.10 406 622 7.3E-66 T 13-10-2018 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Pfam PF00912 Transglycosylase 63 237 1.0E-64 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 SUPERFAMILY SSF56601 219 840 8.99E-113 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Pfam PF17092 Penicillin-binding protein OB-like domain 324 433 1.2E-31 T 13-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 73 791 1.5E-175 T 13-10-2018 CS348_01710 4264caf5b8d87a3baa09a6f8149914c6 858 Gene3D G3DSA:3.40.710.10 251 373 8.0E-12 T 13-10-2018 CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 288 303 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 SUPERFAMILY SSF54211 10 169 1.4E-28 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 SUPERFAMILY SSF52540 189 502 6.24E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 SMART SM00382 209 389 2.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 Gene3D G3DSA:3.40.50.300 180 495 7.6E-59 T 13-10-2018 CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 9.1E-44 T 13-10-2018 CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 492 2.5E-28 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 492 2.1E-234 T 13-10-2018 IPR004482 Mg chelatase-related protein CS348_24315 2d563df8ae7d758f4a1c8e5ed1cc9e32 506 Pfam PF01078 Magnesium chelatase, subunit ChlI 189 386 1.4E-89 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain CS348_14310 e64c9e063bcee0aa8f380096e2f3b5da 303 ProSitePatterns PS01125 ROK family signature. 130 157 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_14310 e64c9e063bcee0aa8f380096e2f3b5da 303 Gene3D G3DSA:3.30.420.40 119 290 6.8E-106 T 13-10-2018 CS348_14310 e64c9e063bcee0aa8f380096e2f3b5da 303 Pfam PF00480 ROK family 2 300 8.4E-68 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_14310 e64c9e063bcee0aa8f380096e2f3b5da 303 Gene3D G3DSA:3.30.420.40 4 297 6.8E-106 T 13-10-2018 CS348_14310 e64c9e063bcee0aa8f380096e2f3b5da 303 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 303 65.003 T 13-10-2018 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 CS348_14310 e64c9e063bcee0aa8f380096e2f3b5da 303 SUPERFAMILY SSF53067 1 300 2.59E-59 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:3.30.70.1440 676 866 0.0 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:3.30.70.1430 571 675 0.0 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:3.30.70.1430 38 822 0.0 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82693 135 330 4.01E-28 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:1.20.1640.10 8 516 0.0 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82693 38 132 1.2E-27 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82714 725 812 2.09E-22 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82866 296 497 1.96E-49 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82693 567 671 2.51E-33 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82866 809 1033 3.01E-44 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1047 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:3.30.2090.10 726 814 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:1.20.1640.10 517 1027 0.0 T 13-10-2018 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 SUPERFAMILY SSF82714 182 271 3.53E-21 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 2.0E-115 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Pfam PF00873 AcrB/AcrD/AcrF family 1 1030 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17990 57a55f069b8c20f6fe5c682f3476aa5d 1049 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 Gene3D G3DSA:3.40.50.1220 199 370 1.6E-61 T 13-10-2018 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 440 459 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 Gene3D G3DSA:3.40.50.970 6 186 2.6E-70 T 13-10-2018 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 176 1.5E-57 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 403 554 1.7E-48 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 205 339 4.2E-45 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 Gene3D G3DSA:3.40.50.970 372 569 1.8E-65 T 13-10-2018 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 SUPERFAMILY SSF52518 380 576 1.47E-68 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 SUPERFAMILY SSF52467 198 371 2.34E-62 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 13 578 7.3E-279 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CS348_19755 7a03501c113a615b0fb79ee65c687bc1 583 SUPERFAMILY SSF52518 11 189 8.16E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Gene3D G3DSA:3.40.50.300 282 549 2.2E-67 T 13-10-2018 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 SUPERFAMILY SSF52540 311 501 5.66E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 SMART SM00382 28 230 9.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 SMART SM00382 344 514 4.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 SUPERFAMILY SSF52540 9 239 6.04E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Pfam PF00005 ABC transporter 336 469 2.1E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Gene3D G3DSA:3.40.50.300 11 279 1.2E-68 T 13-10-2018 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Pfam PF12848 ABC transporter 224 296 7.6E-12 T 13-10-2018 IPR032781 ABC-transporter extension domain CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Pfam PF16326 ABC transporter C-terminal domain 561 629 7.8E-21 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Gene3D G3DSA:1.10.287.380 551 635 1.6E-31 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CS348_15185 46b2bf09c2d46e1b8c0644abdffc506c 635 Pfam PF00005 ABC transporter 19 185 5.3E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_05760 393412d48932f45120838619357feaea 118 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 114 20.325 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_05760 393412d48932f45120838619357feaea 118 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 114 1.3E-41 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_05760 393412d48932f45120838619357feaea 118 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 113 8.6E-30 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_05760 393412d48932f45120838619357feaea 118 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site CS348_05760 393412d48932f45120838619357feaea 118 PIRSF PIRSF004761 1 117 4.4E-36 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_05760 393412d48932f45120838619357feaea 118 Gene3D G3DSA:3.30.2320.80 1 115 1.9E-28 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:2.40.270.10 1012 1242 4.0E-94 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:3.90.1110.10 157 245 1.8E-28 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 1.9E-27 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:2.40.50.150 833 955 3.1E-44 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:2.40.270.10 790 832 5.4E-7 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:3.90.1100.10 643 713 5.4E-21 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 2.3E-58 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 SUPERFAMILY SSF64484 11 1341 0.0 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.359 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 7.4E-160 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:2.40.50.100 714 788 1.7E-32 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:3.90.1100.10 442 630 1.0E-70 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:3.90.1100.10 19 156 7.6E-49 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 340 454 5.4E-15 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 225 2.3E-7 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:3.90.1800.10 1252 1306 8.1E-11 T 13-10-2018 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Gene3D G3DSA:3.90.1110.10 318 441 2.6E-36 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 1.2E-27 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22835 0e2becf46b2d9fb8894de579d89fc2c9 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_00325 156194d14c0a82258179dd352159dbda 460 Pfam PF00232 Glycosyl hydrolase family 1 3 458 2.4E-132 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_00325 156194d14c0a82258179dd352159dbda 460 Gene3D G3DSA:3.20.20.80 3 458 4.0E-149 T 13-10-2018 CS348_00325 156194d14c0a82258179dd352159dbda 460 SUPERFAMILY SSF51445 1 452 8.01E-157 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_00325 156194d14c0a82258179dd352159dbda 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 404 421 4.5E-15 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_00325 156194d14c0a82258179dd352159dbda 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 4.5E-15 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_00325 156194d14c0a82258179dd352159dbda 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 428 440 4.5E-15 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_00325 156194d14c0a82258179dd352159dbda 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 383 394 4.5E-15 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_00325 156194d14c0a82258179dd352159dbda 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 4.5E-15 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_00325 156194d14c0a82258179dd352159dbda 460 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site CS348_19455 dac8962374f7950f110dcff71db81732 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 139 163 1.3E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_19455 dac8962374f7950f110dcff71db81732 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.3E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_19455 dac8962374f7950f110dcff71db81732 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.3E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_19455 dac8962374f7950f110dcff71db81732 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.3E-7 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_19455 dac8962374f7950f110dcff71db81732 256 PIRSF PIRSF006648 11 252 9.9E-22 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_19455 dac8962374f7950f110dcff71db81732 256 Pfam PF01061 ABC-2 type transporter 9 218 9.6E-39 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CS348_19785 1c5bfe2f69b80ea7af9d0253b8a0426b 201 Pfam PF00694 Aconitase C-terminal domain 3 126 1.2E-39 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 CS348_19785 1c5bfe2f69b80ea7af9d0253b8a0426b 201 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 2 200 45.323 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CS348_19785 1c5bfe2f69b80ea7af9d0253b8a0426b 201 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 3 189 8.1E-102 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CS348_19785 1c5bfe2f69b80ea7af9d0253b8a0426b 201 SUPERFAMILY SSF52016 3 194 1.33E-62 T 13-10-2018 CS348_19785 1c5bfe2f69b80ea7af9d0253b8a0426b 201 Gene3D G3DSA:3.20.19.10 1 181 8.5E-79 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 227 308 5.5E-32 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 Gene3D G3DSA:3.40.50.700 46 226 4.9E-70 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 SUPERFAMILY SSF56770 46 310 8.75E-88 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 2 357 1.6E-195 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 Gene3D G3DSA:4.10.480.10 229 339 7.2E-49 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PIRSF PIRSF000310 5 357 1.7E-146 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 45 4.2E-7 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 284 297 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 232 250 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 256 282 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 214 231 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 188 211 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 116 139 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 159 183 9.3E-120 T 13-10-2018 CS348_10890 da8ce569da77a314b9c4ad06fb9a49a5 372 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 207 9.0E-28 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 4.8E-46 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 SUPERFAMILY SSF54980 393 468 1.58E-17 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Gene3D G3DSA:3.40.50.300 72 379 6.8E-121 T 13-10-2018 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Gene3D G3DSA:3.30.70.3280 390 529 2.3E-53 T 13-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 156 1.4E-18 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 3 529 0.0 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 7.4E-47 T 13-10-2018 IPR032090 Peptide chain release factor 3, C-terminal CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 SUPERFAMILY SSF50447 262 393 5.65E-28 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 1.4E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Gene3D G3DSA:3.40.50.300 110 275 6.8E-121 T 13-10-2018 CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 SUPERFAMILY SSF52540 10 277 3.39E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20835 1e25f4114e4eb9d026546f4336bc0714 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.709 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 Gene3D G3DSA:3.40.50.620 147 330 1.3E-15 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 9 341 9.7E-150 T 13-10-2018 IPR005216 Citrate lyase ligase GO:0008771 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 SMART SM00764 150 336 2.2E-136 T 13-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 PIRSF PIRSF005751 3 347 1.8E-139 T 13-10-2018 IPR005216 Citrate lyase ligase GO:0008771 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 114 339 2.0E-132 T 13-10-2018 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 150 208 3.6E-11 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 Pfam PF08218 Citrate lyase ligase C-terminal domain 150 336 7.2E-84 T 13-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 SUPERFAMILY SSF55729 36 118 2.98E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 SUPERFAMILY SSF52374 148 339 1.03E-25 T 13-10-2018 CS348_20070 25f4ae13a300576a275491d4f5d0ce88 347 Gene3D G3DSA:3.40.630.30 13 131 5.7E-7 T 13-10-2018 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 SMART SM00437 280 558 5.5E-108 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Gene3D G3DSA:3.40.50.140 1 156 9.4E-62 T 13-10-2018 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Gene3D G3DSA:1.10.290.10 289 416 1.2E-181 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Gene3D G3DSA:1.10.460.10 162 602 1.2E-181 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 SUPERFAMILY SSF56712 1 607 2.22E-187 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 1.0E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 1.0E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 1.0E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 1.0E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 1.0E-25 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Gene3D G3DSA:2.70.20.10 217 488 1.2E-181 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 SMART SM00493 1 124 3.2E-28 T 13-10-2018 IPR006171 TOPRIM domain CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 644 71.925 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 646 1.4E-300 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Pfam PF01131 DNA topoisomerase 158 593 4.8E-113 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 SMART SM00436 128 223 5.6E-35 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CS348_13840 5e9e5072629b0c9fa49efccb858f2b46 649 Pfam PF01751 Toprim domain 3 135 3.7E-16 T 13-10-2018 IPR006171 TOPRIM domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Gene3D G3DSA:3.20.20.450 751 992 7.0E-28 T 13-10-2018 IPR035919 EAL domain superfamily CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Pfam PF08448 PAS fold 449 560 5.7E-9 T 13-10-2018 IPR013656 PAS fold-4 CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Pfam PF05231 MASE1 19 295 4.4E-49 T 13-10-2018 IPR007895 MASE1 CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 299 423 1.0E-29 T 13-10-2018 IPR000014 PAS domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 441 564 1.5E-13 T 13-10-2018 IPR000014 PAS domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SUPERFAMILY SSF55785 309 419 1.3E-19 T 13-10-2018 IPR035965 PAS domain superfamily CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SMART SM00267 559 731 1.9E-64 T 13-10-2018 IPR000160 GGDEF domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 568 730 5.7E-39 T 13-10-2018 IPR000160 GGDEF domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Pfam PF00990 Diguanylate cyclase, GGDEF domain 570 726 5.2E-45 T 13-10-2018 IPR000160 GGDEF domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Gene3D G3DSA:3.30.70.270 559 734 2.9E-53 T 13-10-2018 CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SMART SM00091 302 368 1.1E-8 T 13-10-2018 IPR000014 PAS domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SMART SM00091 443 511 2.9E-7 T 13-10-2018 IPR000014 PAS domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SMART SM00052 742 986 2.7E-24 T 13-10-2018 IPR001633 EAL domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SUPERFAMILY SSF141868 780 988 7.06E-25 T 13-10-2018 IPR035919 EAL domain superfamily CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Pfam PF00563 EAL domain 776 980 3.4E-25 T 13-10-2018 IPR001633 EAL domain CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Gene3D G3DSA:3.30.450.20 298 434 5.0E-21 T 13-10-2018 CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Gene3D G3DSA:3.30.450.20 435 557 7.9E-19 T 13-10-2018 CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SUPERFAMILY SSF55073 575 733 5.65E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SMART SM00086 375 417 3.9E-9 T 13-10-2018 IPR001610 PAC motif CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SMART SM00086 517 559 7.8E-4 T 13-10-2018 IPR001610 PAC motif CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 SUPERFAMILY SSF55785 432 557 6.77E-17 T 13-10-2018 IPR035965 PAS domain superfamily CS348_09040 c94b5fafd068f0deea875ec4992aa1bd 996 Pfam PF08447 PAS fold 326 408 4.3E-9 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 CS348_03000 08ab4ddcbabdd49ce3d482ce441e952f 329 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 28 323 3.6E-115 T 13-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CS348_03000 08ab4ddcbabdd49ce3d482ce441e952f 329 Gene3D G3DSA:3.40.50.1100 14 317 1.6E-128 T 13-10-2018 CS348_03000 08ab4ddcbabdd49ce3d482ce441e952f 329 SUPERFAMILY SSF53686 11 320 9.95E-95 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_03000 08ab4ddcbabdd49ce3d482ce441e952f 329 Gene3D G3DSA:3.40.50.1100 57 153 1.6E-128 T 13-10-2018 CS348_03000 08ab4ddcbabdd49ce3d482ce441e952f 329 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 312 9.4E-79 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_03000 08ab4ddcbabdd49ce3d482ce441e952f 329 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CS348_02205 5312363b86bd7e8607c579a4595670c1 272 SUPERFAMILY SSF51735 102 268 1.73E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02205 5312363b86bd7e8607c579a4595670c1 272 Gene3D G3DSA:3.40.50.10860 5 254 7.3E-87 T 13-10-2018 CS348_02205 5312363b86bd7e8607c579a4595670c1 272 Gene3D G3DSA:3.40.50.720 102 244 7.3E-87 T 13-10-2018 CS348_02205 5312363b86bd7e8607c579a4595670c1 272 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 32.04 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CS348_02205 5312363b86bd7e8607c579a4595670c1 272 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 121 190 6.1E-9 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CS348_02205 5312363b86bd7e8607c579a4595670c1 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 2.8E-22 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CS348_02205 5312363b86bd7e8607c579a4595670c1 272 SUPERFAMILY SSF53223 2 101 1.09E-30 T 13-10-2018 CS348_02205 5312363b86bd7e8607c579a4595670c1 272 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 3 270 1.0E-102 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 Pfam PF00825 Ribonuclease P 6 111 1.4E-32 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 Gene3D G3DSA:3.30.230.10 1 119 4.3E-45 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 105 6.0E-46 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.822 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 115 2.2E-37 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 SUPERFAMILY SSF54211 5 115 4.3E-31 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_24605 5126393c1c1aca286be3d8d1fc14b6d1 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 13-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 CS348_02750 58d78d4cc4f79ba59ad1cf5a78d423f4 208 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 4.8E-97 T 13-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 CS348_02750 58d78d4cc4f79ba59ad1cf5a78d423f4 208 Gene3D G3DSA:3.40.50.150 30 208 2.7E-61 T 13-10-2018 CS348_02750 58d78d4cc4f79ba59ad1cf5a78d423f4 208 SUPERFAMILY SSF53335 31 207 2.01E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_02750 58d78d4cc4f79ba59ad1cf5a78d423f4 208 Pfam PF01728 FtsJ-like methyltransferase 31 206 1.1E-58 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 CS348_02750 58d78d4cc4f79ba59ad1cf5a78d423f4 208 PIRSF PIRSF005461 1 208 1.8E-82 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 CS348_02750 58d78d4cc4f79ba59ad1cf5a78d423f4 208 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.88 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 CS348_15925 10ef7d3adae6295538f261ec63612053 377 SMART SM00382 44 227 1.3E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15925 10ef7d3adae6295538f261ec63612053 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 1.0E-149 T 13-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CS348_15925 10ef7d3adae6295538f261ec63612053 377 SUPERFAMILY SSF52540 19 256 9.74E-88 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15925 10ef7d3adae6295538f261ec63612053 377 Gene3D G3DSA:2.40.50.940 238 301 2.7E-10 T 13-10-2018 CS348_15925 10ef7d3adae6295538f261ec63612053 377 Gene3D G3DSA:2.40.50.140 302 355 2.7E-10 T 13-10-2018 CS348_15925 10ef7d3adae6295538f261ec63612053 377 Pfam PF08402 TOBE domain 295 375 3.6E-20 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CS348_15925 10ef7d3adae6295538f261ec63612053 377 Gene3D G3DSA:3.40.50.300 19 237 3.3E-70 T 13-10-2018 CS348_15925 10ef7d3adae6295538f261ec63612053 377 SUPERFAMILY SSF50331 253 375 4.76E-17 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_15925 10ef7d3adae6295538f261ec63612053 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_15925 10ef7d3adae6295538f261ec63612053 377 Pfam PF00005 ABC transporter 36 177 1.4E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 440 1.3E-18 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 SUPERFAMILY SSF53067 4 252 4.88E-62 T 13-10-2018 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 PIRSF PIRSF000538 2 495 1.9E-98 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 Gene3D G3DSA:3.30.420.40 1 241 2.7E-68 T 13-10-2018 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 SUPERFAMILY SSF53067 253 489 3.88E-52 T 13-10-2018 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 Gene3D G3DSA:3.30.420.40 243 497 1.8E-52 T 13-10-2018 CS348_00840 7e3ffa829ea8e44140c1c0884dd27b8d 498 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 7.2E-88 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 SUPERFAMILY SSF51735 1 125 1.44E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 150 3.9E-40 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 SUPERFAMILY SSF48179 177 303 7.82E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 Gene3D G3DSA:1.10.1040.10 177 305 1.2E-42 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 305 2.1E-79 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 Gene3D G3DSA:3.40.50.720 1 176 1.5E-53 T 13-10-2018 CS348_06685 49d4f4a04be1fcef3678e1197c7bdb4f 305 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 177 303 3.3E-32 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain CS348_20170 3886adfc6cd7a777ad0009684eeb2f05 571 Gene3D G3DSA:2.60.40.3100 43 135 7.9E-6 T 13-10-2018 IPR038477 Arylsulfotransferase, N-terminal domain superfamily CS348_20170 3886adfc6cd7a777ad0009684eeb2f05 571 Pfam PF17425 Arylsulfotransferase Ig-like domain 54 124 4.6E-15 T 13-10-2018 IPR035391 Arylsulfotransferase, Ig-like domain CS348_20170 3886adfc6cd7a777ad0009684eeb2f05 571 Pfam PF05935 Arylsulfotransferase (ASST) 154 544 1.7E-109 T 13-10-2018 IPR010262 Arylsulfotransferase, bacteria GO:0004062 CS348_18000 41d28b490c8466e375210fae5b9de0c5 72 Pfam PF05321 Haemolysin expression modulating protein 13 69 1.5E-33 T 13-10-2018 IPR007985 Haemolysin expression modulating, HHA CS348_18000 41d28b490c8466e375210fae5b9de0c5 72 SUPERFAMILY SSF68989 2 72 1.2E-31 T 13-10-2018 IPR036666 HHA superfamily CS348_18000 41d28b490c8466e375210fae5b9de0c5 72 Gene3D G3DSA:1.20.1280.40 1 72 1.0E-38 T 13-10-2018 IPR036666 HHA superfamily CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 SUPERFAMILY SSF51971 333 520 8.24E-41 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 SUPERFAMILY SSF51395 1 362 8.46E-111 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 Gene3D G3DSA:3.20.20.70 2 369 1.6E-127 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 Gene3D G3DSA:3.50.50.60 469 625 3.9E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 376 398 3.7E-6 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 619 633 3.7E-6 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 331 1.2E-97 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 SUPERFAMILY SSF51905 461 650 1.34E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 649 3.4E-24 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 618 634 2.4E-11 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 497 515 2.4E-11 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 377 396 2.4E-11 T 13-10-2018 CS348_03130 81799442d05e0a8dcde2ea8e641a8a3a 672 Gene3D G3DSA:3.40.50.720 375 666 3.9E-121 T 13-10-2018 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 Hamap MF_00020 Acetate kinase [ackA]. 1 396 161.089 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 TIGRFAM TIGR00016 ackA: acetate kinase 4 393 1.9E-163 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 SUPERFAMILY SSF53067 5 191 1.72E-63 T 13-10-2018 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 Pfam PF00871 Acetokinase family 7 386 4.3E-159 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PIRSF PIRSF000722 3 396 9.1E-132 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PRINTS PR00471 Acetate kinase family signature 199 220 2.6E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PRINTS PR00471 Acetate kinase family signature 296 309 2.6E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PRINTS PR00471 Acetate kinase family signature 374 386 2.6E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PRINTS PR00471 Acetate kinase family signature 318 334 2.6E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PRINTS PR00471 Acetate kinase family signature 169 182 2.6E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 PRINTS PR00471 Acetate kinase family signature 7 18 2.6E-47 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 Gene3D G3DSA:3.30.420.40 4 191 1.1E-75 T 13-10-2018 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 Gene3D G3DSA:3.30.420.40 192 402 7.6E-86 T 13-10-2018 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 Hamap MF_01881 Propionate kinase [tdcD]. 1 402 72.195 T 13-10-2018 IPR024917 Propionate kinase KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 199 216 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_03010 99a8f7f0eae10f5da75736963c7a0fcd 402 SUPERFAMILY SSF53067 153 392 8.39E-86 T 13-10-2018 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 PIRSF PIRSF009264 1 423 1.0E-189 T 13-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3 418 4.4E-204 T 13-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 SUPERFAMILY SSF51569 2 418 1.28E-164 T 13-10-2018 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 Hamap MF_01296 D-tagatose-1,6-bisphosphate aldolase subunit GatZ [gatZ]. 1 420 70.576 T 13-10-2018 IPR023436 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ GO:0019402 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 Pfam PF08013 Tagatose 6 phosphate kinase 2 418 9.3E-193 T 13-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 Gene3D G3DSA:1.10.400.20 282 405 1.2E-180 T 13-10-2018 CS348_02945 b7be668a7646f6187056ecdb761e5eab 423 Gene3D G3DSA:3.20.20.70 5 411 1.2E-180 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11815 9ce2e0aa1b7227f50be63724014124a5 408 Pfam PF06767 Sif protein 1 108 3.6E-8 T 13-10-2018 IPR010637 Sif CS348_11815 9ce2e0aa1b7227f50be63724014124a5 408 SUPERFAMILY SSF52266 143 404 4.16E-17 T 13-10-2018 CS348_11815 9ce2e0aa1b7227f50be63724014124a5 408 Gene3D G3DSA:3.40.50.1110 133 406 1.6E-28 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CS348_11815 9ce2e0aa1b7227f50be63724014124a5 408 Gene3D G3DSA:3.30.2440.10 31 125 1.2E-18 T 13-10-2018 CS348_11815 9ce2e0aa1b7227f50be63724014124a5 408 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 145 394 5.3E-11 T 13-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.3E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.3E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.3E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 SUPERFAMILY SSF53850 101 305 1.22E-31 T 13-10-2018 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 Gene3D G3DSA:3.40.190.10 176 277 2.8E-40 T 13-10-2018 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 Pfam PF03466 LysR substrate binding domain 100 305 5.0E-32 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 4.7E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 Gene3D G3DSA:3.40.190.10 103 295 2.8E-40 T 13-10-2018 CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 Gene3D G3DSA:1.10.10.10 10 100 2.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11850 66fa6bc6be60d08a5fe218219661482c 307 SUPERFAMILY SSF46785 10 121 5.45E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_07940 df8d0f44f8c6f82e2ba4cf8c50a0ff8e 276 Gene3D G3DSA:3.40.50.970 1 275 2.5E-87 T 13-10-2018 CS348_07940 df8d0f44f8c6f82e2ba4cf8c50a0ff8e 276 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 257 5.4E-47 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_07940 df8d0f44f8c6f82e2ba4cf8c50a0ff8e 276 SUPERFAMILY SSF52518 4 261 1.9E-79 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF56042 432 615 3.59E-52 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SMART SM01211 1039 1294 6.1E-159 T 13-10-2018 CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF52317 1035 1293 5.73E-100 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF56042 818 1033 7.92E-58 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Gene3D G3DSA:3.90.650.10 809 980 2.3E-29 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 2 1295 21.699 T 13-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF82697 1 152 8.37E-54 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1039 1292 3.6E-104 T 13-10-2018 CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Gene3D G3DSA:3.30.1330.10 214 419 5.8E-43 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Gene3D G3DSA:3.30.1330.10 614 808 6.6E-25 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 4 1293 0.0 T 13-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF55326 618 816 1.12E-68 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Pfam PF02769 AIR synthase related protein, C-terminal domain 432 589 6.6E-26 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Pfam PF02769 AIR synthase related protein, C-terminal domain 828 966 1.3E-16 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF55326 221 428 9.07E-65 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Gene3D G3DSA:3.40.50.880 981 1295 5.5E-142 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 SUPERFAMILY SSF109736 155 220 1.7E-21 T 13-10-2018 CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Gene3D G3DSA:3.90.650.10 420 606 1.7E-57 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_06725 4d782fa0068ab12752364e2d14a3d309 1295 Gene3D G3DSA:1.10.8.750 153 213 1.6E-28 T 13-10-2018 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 2.0E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 SUPERFAMILY SSF46894 148 212 2.75E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 Gene3D G3DSA:3.40.50.2300 11 148 1.2E-26 T 13-10-2018 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 SMART SM00421 153 210 1.8E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14750 82382896a78e2676c7a39d4494c2d6b4 216 Gene3D G3DSA:1.10.10.10 149 214 3.2E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21475 f337ba115732a270e3ace82151dc6c9e 306 SUPERFAMILY SSF51658 14 302 6.22E-55 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_21475 f337ba115732a270e3ace82151dc6c9e 306 Pfam PF01261 Xylose isomerase-like TIM barrel 41 254 5.8E-23 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_21475 f337ba115732a270e3ace82151dc6c9e 306 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 13 301 1.1E-116 T 13-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 CS348_21475 f337ba115732a270e3ace82151dc6c9e 306 Hamap MF_01672 Inosose dehydratase [iolE]. 8 304 56.569 T 13-10-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 CS348_21475 f337ba115732a270e3ace82151dc6c9e 306 Gene3D G3DSA:3.20.20.150 5 302 1.4E-77 T 13-10-2018 CS348_04750 1dad39b73c5818718ae944915aaf1d13 137 PIRSF PIRSF020653 1 137 2.7E-79 T 13-10-2018 IPR009883 Inner membrane protein YgfX CS348_04750 1dad39b73c5818718ae944915aaf1d13 137 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 2 129 1.3E-53 T 13-10-2018 IPR009883 Inner membrane protein YgfX CS348_04750 1dad39b73c5818718ae944915aaf1d13 137 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 19 133 1.0E-59 T 13-10-2018 IPR009883 Inner membrane protein YgfX CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Gene3D G3DSA:3.30.460.10 208 341 2.2E-49 T 13-10-2018 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 3.3E-36 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Pfam PF13291 ACT domain 664 740 1.9E-17 T 13-10-2018 IPR002912 ACT domain CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Gene3D G3DSA:3.10.20.30 400 473 7.5E-33 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_05230 697805499042a3313dfbdae5597fc2eb 744 SMART SM00954 251 361 8.4E-66 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Pfam PF13328 HD domain 46 191 2.9E-39 T 13-10-2018 IPR003607 HD/PDEase domain CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Gene3D G3DSA:1.10.3210.10 27 207 2.2E-37 T 13-10-2018 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 SUPERFAMILY SSF81301 196 410 1.46E-63 T 13-10-2018 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 SUPERFAMILY SSF81271 399 465 3.11E-22 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 63 739 6.5E-186 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Gene3D G3DSA:3.30.70.260 663 743 7.0E-18 T 13-10-2018 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 SUPERFAMILY SSF55021 665 741 2.94E-13 T 13-10-2018 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 SUPERFAMILY SSF109604 26 207 4.71E-45 T 13-10-2018 CS348_05230 697805499042a3313dfbdae5597fc2eb 744 Pfam PF02824 TGS domain 406 465 2.1E-21 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Pfam PF01909 Nucleotidyltransferase domain 86 126 9.7E-7 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 SMART SM00471 464 611 2.2E-11 T 13-10-2018 IPR003607 HD/PDEase domain CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Pfam PF01842 ACT domain 709 764 2.0E-7 T 13-10-2018 IPR002912 ACT domain CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Pfam PF01842 ACT domain 820 872 2.3E-8 T 13-10-2018 IPR002912 ACT domain CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 SUPERFAMILY SSF81593 213 328 7.85E-10 T 13-10-2018 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 SUPERFAMILY SSF55021 816 870 4.58E-9 T 13-10-2018 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 SUPERFAMILY SSF55021 705 771 3.54E-9 T 13-10-2018 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 SUPERFAMILY SSF81301 30 189 9.82E-21 T 13-10-2018 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 SUPERFAMILY SSF109604 457 625 1.13E-13 T 13-10-2018 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 54 884 4.6E-298 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Gene3D G3DSA:1.10.3210.10 457 597 1.3E-7 T 13-10-2018 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 890 346.181 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Pfam PF08335 GlnD PII-uridylyltransferase 193 331 1.2E-36 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 Pfam PF01966 HD domain 468 601 4.9E-15 T 13-10-2018 IPR006674 HD domain CS348_19245 7ebadfa35b0eb3c2cd59f8953376ee5c 890 PIRSF PIRSF006288 25 889 0.0 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CS348_04360 bd021bd9f693319bb9ca3b1ba3579014 337 Gene3D G3DSA:1.10.443.10 104 325 1.3E-31 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_04360 bd021bd9f693319bb9ca3b1ba3579014 337 SUPERFAMILY SSF56349 5 313 1.5E-40 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_04360 bd021bd9f693319bb9ca3b1ba3579014 337 Pfam PF00589 Phage integrase family 150 303 3.3E-24 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_04360 bd021bd9f693319bb9ca3b1ba3579014 337 Gene3D G3DSA:1.10.150.130 10 98 5.9E-9 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_04360 bd021bd9f693319bb9ca3b1ba3579014 337 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 13 87 3.2E-6 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CS348_23820 d9041f302973403f8c435307aebba3ac 207 Gene3D G3DSA:3.40.30.10 119 207 3.7E-24 T 13-10-2018 CS348_23820 d9041f302973403f8c435307aebba3ac 207 Gene3D G3DSA:3.40.30.10 11 118 2.6E-28 T 13-10-2018 CS348_23820 d9041f302973403f8c435307aebba3ac 207 Pfam PF01323 DSBA-like thioredoxin domain 40 196 1.4E-29 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CS348_23820 d9041f302973403f8c435307aebba3ac 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_23820 d9041f302973403f8c435307aebba3ac 207 PIRSF PIRSF001488 1 207 2.7E-89 T 13-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL CS348_23820 d9041f302973403f8c435307aebba3ac 207 SUPERFAMILY SSF52833 21 205 2.51E-46 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 27 341 5.8E-122 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 70.389 T 13-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 Pfam PF02445 Quinolinate synthetase A protein 31 340 4.0E-101 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 Gene3D G3DSA:3.40.50.10800 200 295 2.0E-92 T 13-10-2018 CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 Gene3D G3DSA:3.40.50.10800 115 340 2.0E-92 T 13-10-2018 CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 Gene3D G3DSA:3.40.50.10800 31 322 2.0E-92 T 13-10-2018 CS348_16520 1f76ce601adea46006fa9fe15a2933ae 347 SUPERFAMILY SSF142754 29 341 2.48E-105 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CS348_21985 86cd662a6b6807babe707817979b1d27 478 Pfam PF00206 Lyase 13 345 1.0E-111 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CS348_21985 86cd662a6b6807babe707817979b1d27 478 Gene3D G3DSA:1.20.200.10 143 410 2.0E-117 T 13-10-2018 CS348_21985 86cd662a6b6807babe707817979b1d27 478 SUPERFAMILY SSF48557 2 458 6.92E-146 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CS348_21985 86cd662a6b6807babe707817979b1d27 478 Gene3D G3DSA:1.10.40.30 411 460 2.9E-30 T 13-10-2018 CS348_21985 86cd662a6b6807babe707817979b1d27 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CS348_21985 86cd662a6b6807babe707817979b1d27 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 1.2E-27 T 13-10-2018 IPR000362 Fumarate lyase family CS348_21985 86cd662a6b6807babe707817979b1d27 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 1.2E-27 T 13-10-2018 IPR000362 Fumarate lyase family CS348_21985 86cd662a6b6807babe707817979b1d27 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 1.2E-27 T 13-10-2018 IPR000362 Fumarate lyase family CS348_21985 86cd662a6b6807babe707817979b1d27 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 1.2E-27 T 13-10-2018 IPR000362 Fumarate lyase family CS348_21985 86cd662a6b6807babe707817979b1d27 478 Pfam PF10415 Fumarase C C-terminus 411 464 3.8E-17 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_21985 86cd662a6b6807babe707817979b1d27 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 1.7E-273 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 CS348_21985 86cd662a6b6807babe707817979b1d27 478 Gene3D G3DSA:1.10.275.10 6 142 1.6E-60 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CS348_00595 5f16b3f122f2c7e9725400f34f096601 425 Gene3D G3DSA:3.40.50.11720 39 209 1.4E-47 T 13-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 CS348_00595 5f16b3f122f2c7e9725400f34f096601 425 Pfam PF00534 Glycosyl transferases group 1 235 398 4.2E-12 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_00595 5f16b3f122f2c7e9725400f34f096601 425 Gene3D G3DSA:3.40.50.2000 216 403 1.4E-67 T 13-10-2018 CS348_00595 5f16b3f122f2c7e9725400f34f096601 425 SUPERFAMILY SSF53756 57 420 5.23E-20 T 13-10-2018 CS348_00595 5f16b3f122f2c7e9725400f34f096601 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 211 4.2E-67 T 13-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 Gene3D G3DSA:1.10.260.40 3 60 3.4E-21 T 13-10-2018 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 SUPERFAMILY SSF53822 63 314 7.07E-60 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 Gene3D G3DSA:3.40.50.2300 68 302 1.1E-79 T 13-10-2018 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 SMART SM00354 4 74 3.5E-33 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 Gene3D G3DSA:3.40.50.2300 163 279 1.1E-79 T 13-10-2018 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 314 1.5E-169 T 13-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.2E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.2E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 Pfam PF13377 Periplasmic binding protein-like domain 168 312 7.3E-20 T 13-10-2018 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 4.4E-21 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 SUPERFAMILY SSF47413 3 60 1.33E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_21330 1bbea7d27e6e9af6c1dd0d350f6e3c85 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 13-10-2018 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 236 265 1.6E-44 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 130 159 1.6E-44 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 284 313 1.6E-44 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 207 234 1.6E-44 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 170 322 4.9E-44 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 SMART SM00283 109 356 1.2E-66 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 Gene3D G3DSA:1.10.287.950 57 358 2.6E-69 T 13-10-2018 CS348_11665 34527fbf28bf643cfc87756b132a0eaf 384 SUPERFAMILY SSF58104 76 357 1.57E-57 T 13-10-2018 CS348_12745 3eb1d22857232b519b64be82ab540e7f 333 Pfam PF00962 Adenosine/AMP deaminase 6 328 3.1E-102 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 CS348_12745 3eb1d22857232b519b64be82ab540e7f 333 Gene3D G3DSA:3.20.20.140 4 333 1.4E-96 T 13-10-2018 CS348_12745 3eb1d22857232b519b64be82ab540e7f 333 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 2.0E-108 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 CS348_12745 3eb1d22857232b519b64be82ab540e7f 333 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 13-10-2018 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 CS348_12745 3eb1d22857232b519b64be82ab540e7f 333 SUPERFAMILY SSF51556 5 325 2.29E-76 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_12745 3eb1d22857232b519b64be82ab540e7f 333 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.657 T 13-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 SUPERFAMILY SSF51569 1 290 4.4E-98 T 13-10-2018 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 Gene3D G3DSA:3.30.160.270 390 501 2.3E-12 T 13-10-2018 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 Gene3D G3DSA:1.10.238.260 280 389 1.5E-32 T 13-10-2018 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 5.5E-37 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 Gene3D G3DSA:3.20.20.70 1 277 5.5E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 Pfam PF00682 HMGL-like 4 273 4.0E-105 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 42.699 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 SMART SM00917 369 500 1.3E-37 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 4.8E-255 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 SUPERFAMILY SSF110921 391 499 3.53E-26 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_19770 4bc0bd8b4ba5a913a5ce32c2826356c9 523 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 SUPERFAMILY SSF48163 299 461 4.97E-45 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 Gene3D G3DSA:1.10.10.350 366 470 4.6E-23 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 5.9E-28 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 5.9E-28 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 5.9E-28 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 5.9E-28 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 5.9E-28 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.816 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 3.3E-121 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 Gene3D G3DSA:3.40.50.620 1 313 1.1E-135 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_07495 1f8eda4250893726c8911b68e98558eb 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 462 4.0E-209 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CS348_07495 1f8eda4250893726c8911b68e98558eb 471 SUPERFAMILY SSF52374 3 298 2.68E-113 T 13-10-2018 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 SUPERFAMILY SSF51569 1 292 1.47E-100 T 13-10-2018 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 SMART SM01130 1 290 1.6E-141 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 65.616 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 Gene3D G3DSA:3.20.20.70 1 292 4.4E-119 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 1.6E-122 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 288 1.1E-125 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 PIRSF PIRSF001365 1 292 7.2E-98 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 5.0E-35 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 5.0E-35 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 5.0E-35 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_07135 9cde417ca93b1cc49f6c34c65de71dab 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 5.0E-35 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_15545 bc7536b4c1821d88e326dbeabfb05011 477 Pfam PF11066 Protein of unknown function (DUF2867) 332 463 1.8E-12 T 13-10-2018 IPR021295 Protein of unknown function DUF2867 CS348_15545 bc7536b4c1821d88e326dbeabfb05011 477 SUPERFAMILY SSF51735 3 295 2.11E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_15545 bc7536b4c1821d88e326dbeabfb05011 477 Gene3D G3DSA:3.40.50.720 4 300 9.4E-38 T 13-10-2018 CS348_15545 bc7536b4c1821d88e326dbeabfb05011 477 Pfam PF13460 NAD(P)H-binding 9 147 3.1E-15 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_04880 1df1bd8440c621c986d4a6fe088d8216 160 Pfam PF05232 Chlorhexidine efflux transporter 86 149 1.6E-22 T 13-10-2018 IPR007896 Chlorhexidine efflux transporter CS348_04880 1df1bd8440c621c986d4a6fe088d8216 160 Pfam PF05232 Chlorhexidine efflux transporter 18 80 5.3E-24 T 13-10-2018 IPR007896 Chlorhexidine efflux transporter CS348_18320 22209c1aecab603ecb00342822dfa293 323 Gene3D G3DSA:1.20.1640.10 108 314 1.4E-12 T 13-10-2018 CS348_18320 22209c1aecab603ecb00342822dfa293 323 Pfam PF02355 Protein export membrane protein 118 301 8.8E-69 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CS348_18320 22209c1aecab603ecb00342822dfa293 323 SUPERFAMILY SSF82866 78 303 4.32E-40 T 13-10-2018 CS348_18320 22209c1aecab603ecb00342822dfa293 323 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 1.3E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CS348_18320 22209c1aecab603ecb00342822dfa293 323 PRINTS PR01755 Bacterial translocase SecF protein signature 208 226 1.3E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CS348_18320 22209c1aecab603ecb00342822dfa293 323 PRINTS PR01755 Bacterial translocase SecF protein signature 160 174 1.3E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CS348_18320 22209c1aecab603ecb00342822dfa293 323 PRINTS PR01755 Bacterial translocase SecF protein signature 240 255 1.3E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CS348_18320 22209c1aecab603ecb00342822dfa293 323 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 292 5.3E-87 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CS348_18320 22209c1aecab603ecb00342822dfa293 323 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 303 28.182 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CS348_18320 22209c1aecab603ecb00342822dfa293 323 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 124 289 1.3E-53 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CS348_18320 22209c1aecab603ecb00342822dfa293 323 Pfam PF07549 SecD/SecF GG Motif 39 66 1.3E-11 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Gene3D G3DSA:3.40.190.10 106 215 3.5E-13 T 13-10-2018 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 SUPERFAMILY SSF47384 360 429 2.55E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 582 1.6E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 SUPERFAMILY SSF53850 19 215 2.66E-11 T 13-10-2018 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Gene3D G3DSA:3.40.190.10 24 105 3.5E-13 T 13-10-2018 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Gene3D G3DSA:3.30.565.10 427 582 9.9E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 SMART SM00387 473 584 7.3E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Gene3D G3DSA:1.10.287.130 367 426 2.5E-16 T 13-10-2018 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Pfam PF00512 His Kinase A (phospho-acceptor) domain 364 426 2.4E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 SMART SM00388 362 432 4.8E-4 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 SUPERFAMILY SSF55874 418 582 7.03E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 534 544 1.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 530 1.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 581 1.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature 545 563 1.3E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_24945 7c482f89a1b6dd5b15a87728290bbee6 588 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 24 267 1.2E-26 T 13-10-2018 CS348_05340 a779184c1620d623141e061760b79198 305 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 16 129 4.0E-23 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CS348_05340 a779184c1620d623141e061760b79198 305 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 132 239 1.3E-29 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CS348_05340 a779184c1620d623141e061760b79198 305 Pfam PF01867 CRISPR associated protein Cas1 129 227 3.2E-8 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CS348_05340 a779184c1620d623141e061760b79198 305 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 14 299 16.862 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CS348_05340 a779184c1620d623141e061760b79198 305 Gene3D G3DSA:1.20.120.920 95 291 1.3E-86 T 13-10-2018 CS348_05340 a779184c1620d623141e061760b79198 305 TIGRFAM TIGR03638 cas1_ECOLI: CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI 8 272 1.6E-112 T 13-10-2018 IPR019851 CRISPR-associated protein Cas1, ECOLI subtype GO:0004520|GO:0043571|GO:0046872 CS348_05340 a779184c1620d623141e061760b79198 305 Gene3D G3DSA:3.100.10.20 1 94 1.3E-41 T 13-10-2018 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 Gene3D G3DSA:3.40.50.920 538 663 5.8E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 Pfam PF02780 Transketolase, C-terminal domain 540 655 2.2E-19 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 SMART SM00861 355 525 2.1E-66 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 8.5E-173 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 Gene3D G3DSA:3.40.50.970 1 326 5.5E-137 T 13-10-2018 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 SUPERFAMILY SSF52518 336 526 1.4E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 662 0.0 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 SUPERFAMILY SSF52922 533 663 1.7E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 Gene3D G3DSA:3.40.50.970 327 537 1.1E-84 T 13-10-2018 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 SUPERFAMILY SSF52518 5 330 6.7E-122 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_04540 16af5aecb077b4cf023a530ffbe336df 663 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 2.8E-44 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 Pfam PF12795 Mechanosensitive ion channel porin domain 50 289 7.1E-61 T 13-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 Gene3D G3DSA:2.30.30.60 945 994 2.9E-13 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 959 993 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 Pfam PF00924 Mechanosensitive ion channel 887 1086 8.6E-61 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 SUPERFAMILY SSF82861 845 928 1.03E-8 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 Gene3D G3DSA:3.30.70.100 997 1091 1.4E-20 T 13-10-2018 CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 SUPERFAMILY SSF82689 997 1097 2.88E-26 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 SUPERFAMILY SSF50182 930 995 6.87E-17 T 13-10-2018 IPR010920 LSM domain superfamily CS348_17975 5c47d55c2de94d1e9b73e6f8f5b75db5 1120 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 509 826 2.6E-93 T 13-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 CS348_03470 9898cff91308d93989a20d957542bc17 305 Gene3D G3DSA:1.10.10.60 193 301 2.4E-27 T 13-10-2018 CS348_03470 9898cff91308d93989a20d957542bc17 305 SMART SM00342 213 296 1.5E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_03470 9898cff91308d93989a20d957542bc17 305 SUPERFAMILY SSF46689 197 247 9.45E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_03470 9898cff91308d93989a20d957542bc17 305 Pfam PF06719 AraC-type transcriptional regulator N-terminus 35 184 3.0E-37 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal CS348_03470 9898cff91308d93989a20d957542bc17 305 Pfam PF12833 Helix-turn-helix domain 219 294 3.4E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_03470 9898cff91308d93989a20d957542bc17 305 SUPERFAMILY SSF46689 249 299 3.32E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_21430 35103ea49f9a7f83a963207ef1c49c41 271 SUPERFAMILY SSF51658 3 269 4.42E-67 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_21430 35103ea49f9a7f83a963207ef1c49c41 271 PIRSF PIRSF036778 1 271 1.3E-114 T 13-10-2018 IPR014621 Uncharacterised conserved protein UCP036778, sugar epimerase-type CS348_21430 35103ea49f9a7f83a963207ef1c49c41 271 Gene3D G3DSA:3.20.20.150 1 271 9.1E-70 T 13-10-2018 CS348_21430 35103ea49f9a7f83a963207ef1c49c41 271 Pfam PF01261 Xylose isomerase-like TIM barrel 24 206 1.3E-14 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 353 362 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 164 177 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 226 241 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 SUPERFAMILY SSF52172 6 185 2.28E-48 T 13-10-2018 IPR011006 CheY-like superfamily CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Pfam PF00072 Response regulator receiver domain 6 115 1.3E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 8.0E-11 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 8.0E-11 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 SUPERFAMILY SSF46689 380 469 1.76E-24 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Pfam PF00158 Sigma-54 interaction domain 140 307 1.8E-70 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Gene3D G3DSA:1.10.8.60 311 377 2.3E-19 T 13-10-2018 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Gene3D G3DSA:3.40.50.300 126 310 6.6E-67 T 13-10-2018 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Pfam PF02954 Bacterial regulatory protein, Fis family 427 466 2.0E-15 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Gene3D G3DSA:1.10.10.60 379 469 3.2E-29 T 13-10-2018 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 Gene3D G3DSA:3.40.50.2300 1 124 1.4E-47 T 13-10-2018 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 SMART SM00382 160 303 5.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 SMART SM00448 4 115 3.5E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 466 5.7E-247 T 13-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 CS348_23775 f0edd45f5204647678f9a6bfc688040e 469 SUPERFAMILY SSF52540 139 382 1.86E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 344 2.4E-29 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 44.874 T 13-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 SUPERFAMILY SSF55326 7 161 1.48E-40 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 Gene3D G3DSA:3.90.650.10 164 347 1.9E-52 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 3.7E-132 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 3.1E-18 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 PIRSF PIRSF036407 1 346 9.9E-116 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 SUPERFAMILY SSF56042 164 340 4.04E-50 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_13845 36e27773ecaa33b003532571c3d7e7d8 347 Gene3D G3DSA:3.30.1330.10 1 162 2.4E-48 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_20240 d4f1ebd1943b2c084369bb3e7f4bbd9e 181 SUPERFAMILY SSF49401 29 181 1.64E-35 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_20240 d4f1ebd1943b2c084369bb3e7f4bbd9e 181 Pfam PF00419 Fimbrial protein 31 180 6.8E-16 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_20240 d4f1ebd1943b2c084369bb3e7f4bbd9e 181 Gene3D G3DSA:2.60.40.1090 28 181 1.4E-42 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_08960 eef76feb9c6850bde52cf0fd1708e4d4 138 Pfam PF05932 Tir chaperone protein (CesT) family 7 122 6.3E-29 T 13-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 CS348_08960 eef76feb9c6850bde52cf0fd1708e4d4 138 Gene3D G3DSA:3.30.1460.10 38 138 3.7E-51 T 13-10-2018 CS348_08960 eef76feb9c6850bde52cf0fd1708e4d4 138 Gene3D G3DSA:1.10.287.390 1 37 2.4E-9 T 13-10-2018 CS348_08960 eef76feb9c6850bde52cf0fd1708e4d4 138 SUPERFAMILY SSF69635 1 135 3.18E-33 T 13-10-2018 CS348_12895 bc4598cdb5551d3e6e9df6014fe2f150 215 Gene3D G3DSA:3.30.420.10 9 213 3.7E-57 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_12895 bc4598cdb5551d3e6e9df6014fe2f150 215 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 208 7.8E-111 T 13-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 CS348_12895 bc4598cdb5551d3e6e9df6014fe2f150 215 SUPERFAMILY SSF53098 13 207 2.6E-55 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_12895 bc4598cdb5551d3e6e9df6014fe2f150 215 Pfam PF00929 Exonuclease 20 194 8.0E-39 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_12895 bc4598cdb5551d3e6e9df6014fe2f150 215 Hamap MF_00157 Ribonuclease T [rnt]. 1 215 118.083 T 13-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 CS348_12895 bc4598cdb5551d3e6e9df6014fe2f150 215 SMART SM00479 18 203 2.3E-35 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 Pfam PF01380 SIS domain 117 208 1.2E-10 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 13-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.252 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 SUPERFAMILY SSF53697 4 248 2.07E-74 T 13-10-2018 CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 Gene3D G3DSA:1.10.8.1080 219 297 4.5E-30 T 13-10-2018 CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 296 1.3E-124 T 13-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 CS348_06695 dc6b7095c32bdf729fe14b56455b4ddb 297 Gene3D G3DSA:3.40.50.10490 1 218 4.7E-84 T 13-10-2018 CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Pfam PF07676 WD40-like Beta Propeller Repeat 369 396 0.0032 T 13-10-2018 IPR011659 WD40-like Beta Propeller CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 4.3E-5 T 13-10-2018 IPR011659 WD40-like Beta Propeller CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Pfam PF07676 WD40-like Beta Propeller Repeat 281 315 1.1E-10 T 13-10-2018 IPR011659 WD40-like Beta Propeller CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.8E-9 T 13-10-2018 IPR011659 WD40-like Beta Propeller CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Gene3D G3DSA:3.40.50.10070 22 164 4.6E-55 T 13-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Gene3D G3DSA:2.120.10.30 165 430 6.9E-118 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Pfam PF04052 TolB amino-terminal domain 23 121 1.1E-32 T 13-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 SUPERFAMILY SSF52964 28 161 1.03E-40 T 13-10-2018 CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 426 51.669 T 13-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 15 427 1.5E-159 T 13-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 CS348_16575 dfa6d3c0bfedca51cb2cf840718ed4a3 430 SUPERFAMILY SSF69304 155 428 1.83E-55 T 13-10-2018 CS348_11545 ba3f992eb770a5c1cea0aea958901562 537 Gene3D G3DSA:3.10.105.10 291 506 2.5E-200 T 13-10-2018 CS348_11545 ba3f992eb770a5c1cea0aea958901562 537 Gene3D G3DSA:3.40.190.10 41 518 2.5E-200 T 13-10-2018 CS348_11545 ba3f992eb770a5c1cea0aea958901562 537 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 453 1.1E-85 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_11545 ba3f992eb770a5c1cea0aea958901562 537 SUPERFAMILY SSF53850 32 528 2.11E-138 T 13-10-2018 CS348_11545 ba3f992eb770a5c1cea0aea958901562 537 Gene3D G3DSA:3.90.76.10 67 190 2.5E-200 T 13-10-2018 CS348_11545 ba3f992eb770a5c1cea0aea958901562 537 PIRSF PIRSF002741 2 537 2.9E-111 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_14780 97d20cadd5d8c825c33d32e60d38b93c 245 SUPERFAMILY SSF89550 3 241 1.16E-62 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CS348_14780 97d20cadd5d8c825c33d32e60d38b93c 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 50.828 T 13-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 CS348_14780 97d20cadd5d8c825c33d32e60d38b93c 245 Gene3D G3DSA:3.20.20.140 1 245 1.1E-68 T 13-10-2018 CS348_14780 97d20cadd5d8c825c33d32e60d38b93c 245 Pfam PF02811 PHP domain 5 79 4.7E-8 T 13-10-2018 IPR004013 PHP domain GO:0003824 CS348_14780 97d20cadd5d8c825c33d32e60d38b93c 245 SMART SM00481 4 78 2.2E-20 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CS348_09440 8465d500913beee2d0638e2f4218e119 91 SUPERFAMILY SSF143414 3 89 8.89E-32 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09440 8465d500913beee2d0638e2f4218e119 91 SMART SM00877 3 79 1.5E-37 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09440 8465d500913beee2d0638e2f4218e119 91 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 45 6.0E-16 T 13-10-2018 CS348_09440 8465d500913beee2d0638e2f4218e119 91 Pfam PF00936 BMC domain 4 79 4.6E-29 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09440 8465d500913beee2d0638e2f4218e119 91 Gene3D G3DSA:3.30.70.1710 1 91 9.5E-41 T 13-10-2018 CS348_09440 8465d500913beee2d0638e2f4218e119 91 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 13-10-2018 IPR020808 Bacterial microcompartments protein, conserved site CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 Gene3D G3DSA:3.40.190.80 147 245 7.0E-33 T 13-10-2018 CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 204 218 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 Pfam PF00459 Inositol monophosphatase family 3 233 1.3E-48 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 SUPERFAMILY SSF56655 1 243 3.53E-75 T 13-10-2018 CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 244 2.9E-110 T 13-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 Gene3D G3DSA:3.30.540.10 1 146 5.1E-46 T 13-10-2018 CS348_21590 1305212b64b52bacd6daa375d6bd50fb 246 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 1 246 41.717 T 13-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 Gene3D G3DSA:1.20.58.100 425 540 2.4E-47 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 8 520 3.6E-233 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 SUPERFAMILY SSF56425 238 353 8.97E-41 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 Gene3D G3DSA:3.50.50.60 1 135 2.2E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 Pfam PF00890 FAD binding domain 10 392 2.4E-102 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 SUPERFAMILY SSF51905 4 446 1.71E-74 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 522 1.7E-14 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 5.5E-11 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 5.5E-11 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 3.5E-5 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 3.5E-5 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 Gene3D G3DSA:3.90.700.10 245 348 1.0E-114 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 PIRSF PIRSF000171 1 263 3.7E-22 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 PIRSF PIRSF000171 339 530 5.7E-14 T 13-10-2018 CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 Gene3D G3DSA:3.50.50.60 138 401 1.0E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_06595 50c6a40c86e1cfb8a4b888f5499d59d7 540 SUPERFAMILY SSF46977 425 524 7.33E-32 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 Gene3D G3DSA:1.25.40.10 141 262 6.2E-31 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 Gene3D G3DSA:1.20.5.110 35 113 7.7E-34 T 13-10-2018 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 Pfam PF13432 Tetratricopeptide repeat 158 213 2.1E-6 T 13-10-2018 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 Pfam PF13174 Tetratricopeptide repeat 217 249 1.3E-7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 SUPERFAMILY SSF48452 139 253 1.55E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 262 19.763 T 13-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 Pfam PF16331 TolA binding protein trimerisation 37 111 3.6E-24 T 13-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 CS348_16565 b1acb76ba50d3622bcc8bd92d347eac7 262 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 143 259 1.2E-40 T 13-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 3.7E-38 T 13-10-2018 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 3.7E-38 T 13-10-2018 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 3.7E-38 T 13-10-2018 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 3.7E-38 T 13-10-2018 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 3.7E-38 T 13-10-2018 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 8.4E-38 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 SUPERFAMILY SSF51971 145 401 6.47E-69 T 13-10-2018 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 5.9E-268 T 13-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 Gene3D G3DSA:3.50.50.60 146 267 4.5E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 Gene3D G3DSA:3.50.50.60 407 469 2.7E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 SUPERFAMILY SSF46548 7 157 6.28E-41 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 Gene3D G3DSA:1.10.1060.10 13 145 1.5E-34 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 7.3E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_02570 f94c5ea52e8768d21139a68d905cd6d4 472 Gene3D G3DSA:3.50.50.60 278 405 2.7E-24 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_12885 39f5e92c491f7a75b54e1246081c91f9 365 SUPERFAMILY SSF51395 4 364 6.11E-125 T 13-10-2018 CS348_12885 39f5e92c491f7a75b54e1246081c91f9 365 Gene3D G3DSA:3.20.20.70 3 365 1.1E-140 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_12885 39f5e92c491f7a75b54e1246081c91f9 365 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 343 1.8E-92 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CS348_16850 8373efddf38476153a68cd5b03533b84 406 Pfam PF00480 ROK family 89 392 1.2E-97 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_16850 8373efddf38476153a68cd5b03533b84 406 Pfam PF01047 MarR family 25 63 1.0E-7 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_16850 8373efddf38476153a68cd5b03533b84 406 Gene3D G3DSA:3.30.420.40 210 378 2.2E-90 T 13-10-2018 CS348_16850 8373efddf38476153a68cd5b03533b84 406 SUPERFAMILY SSF53067 88 394 5.4E-54 T 13-10-2018 CS348_16850 8373efddf38476153a68cd5b03533b84 406 SUPERFAMILY SSF46785 14 79 2.31E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16850 8373efddf38476153a68cd5b03533b84 406 Gene3D G3DSA:1.10.10.10 5 82 4.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16850 8373efddf38476153a68cd5b03533b84 406 ProSitePatterns PS01125 ROK family signature. 220 247 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_16850 8373efddf38476153a68cd5b03533b84 406 Gene3D G3DSA:3.30.420.40 93 386 2.2E-90 T 13-10-2018 CS348_05355 661fb9fb690f0bb9e32d35ad13a27618 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 6.5E-66 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CS348_05355 661fb9fb690f0bb9e32d35ad13a27618 302 PIRSF PIRSF002936 1 302 2.5E-155 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CS348_05355 661fb9fb690f0bb9e32d35ad13a27618 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 59.439 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CS348_05355 661fb9fb690f0bb9e32d35ad13a27618 302 SUPERFAMILY SSF52402 6 209 3.26E-74 T 13-10-2018 CS348_05355 661fb9fb690f0bb9e32d35ad13a27618 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 1.8E-168 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CS348_05355 661fb9fb690f0bb9e32d35ad13a27618 302 Gene3D G3DSA:3.40.50.620 7 212 1.1E-65 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16405 1905cabf69d0ad6737f5be67cbb451b2 427 Gene3D G3DSA:2.160.20.10 26 427 1.1E-159 T 13-10-2018 IPR012334 Pectin lyase fold CS348_16405 1905cabf69d0ad6737f5be67cbb451b2 427 Pfam PF01095 Pectinesterase 193 339 2.1E-11 T 13-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 CS348_16405 1905cabf69d0ad6737f5be67cbb451b2 427 SUPERFAMILY SSF51126 75 419 5.83E-36 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_10920 47a436ec8b3db2e80e89cfbb42dbd8f8 561 SUPERFAMILY SSF52091 451 557 9.42E-15 T 13-10-2018 IPR036513 STAS domain superfamily CS348_10920 47a436ec8b3db2e80e89cfbb42dbd8f8 561 Gene3D G3DSA:3.30.750.24 442 559 2.1E-29 T 13-10-2018 IPR036513 STAS domain superfamily CS348_10920 47a436ec8b3db2e80e89cfbb42dbd8f8 561 TIGRFAM TIGR00815 sulP: sulfate permease 18 555 8.9E-146 T 13-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 CS348_10920 47a436ec8b3db2e80e89cfbb42dbd8f8 561 Pfam PF01740 STAS domain 452 555 7.4E-13 T 13-10-2018 IPR002645 STAS domain CS348_10920 47a436ec8b3db2e80e89cfbb42dbd8f8 561 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 13-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 CS348_10920 47a436ec8b3db2e80e89cfbb42dbd8f8 561 Pfam PF00916 Sulfate permease family 29 411 7.7E-76 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 CS348_20540 6b320d0bf26df70540e88acd3887d39f 115 Pfam PF04965 Gene 25-like lysozyme 21 92 6.3E-10 T 13-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD CS348_20540 6b320d0bf26df70540e88acd3887d39f 115 SUPERFAMILY SSF160719 16 100 8.37E-22 T 13-10-2018 CS348_20540 6b320d0bf26df70540e88acd3887d39f 115 Gene3D G3DSA:3.10.450.40 5 111 7.4E-16 T 13-10-2018 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 Gene3D G3DSA:3.40.50.10860 48 187 4.9E-64 T 13-10-2018 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 42 170 3.0E-54 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 SUPERFAMILY SSF51735 188 423 9.97E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 Gene3D G3DSA:1.10.8.1210 2 47 1.2E-9 T 13-10-2018 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 107 120 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 Gene3D G3DSA:3.40.50.720 188 423 2.8E-83 T 13-10-2018 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 SUPERFAMILY SSF53223 11 190 1.15E-68 T 13-10-2018 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 188 420 9.5E-74 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 SMART SM00839 190 420 9.7E-91 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 PIRSF PIRSF000185 10 423 4.7E-159 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 179 201 6.4E-32 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 348 359 6.4E-32 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 99 113 6.4E-32 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_10845 1ace4bc42e3ffa79b8d8b5f9ba6e1498 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 221 241 6.4E-32 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 Gene3D G3DSA:3.40.1190.10 94 299 4.8E-82 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 370 4.1E-8 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 SUPERFAMILY SSF53623 95 297 2.09E-56 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 Pfam PF08245 Mur ligase middle domain 110 280 3.7E-27 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 Gene3D G3DSA:3.90.190.20 300 434 2.2E-46 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 SUPERFAMILY SSF51984 3 94 1.7E-23 T 13-10-2018 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 4.8E-129 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 SUPERFAMILY SSF53244 299 437 7.32E-53 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 Gene3D G3DSA:3.40.50.720 2 93 9.0E-25 T 13-10-2018 CS348_19705 ae12cd8391ce1ab37cd49d9919aa683c 438 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.788 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_17790 62d93e3a1057f8acc4cb00d91c7fe2ce 361 SMART SM00450 1 131 2.0E-9 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_17790 62d93e3a1057f8acc4cb00d91c7fe2ce 361 Gene3D G3DSA:3.40.250.10 7 131 1.6E-33 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_17790 62d93e3a1057f8acc4cb00d91c7fe2ce 361 SUPERFAMILY SSF52821 6 130 3.4E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_17790 62d93e3a1057f8acc4cb00d91c7fe2ce 361 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 1 361 48.587 T 13-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 CS348_17790 62d93e3a1057f8acc4cb00d91c7fe2ce 361 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 14 345 8.3E-102 T 13-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 Gene3D G3DSA:3.40.50.1450 3 162 7.1E-38 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 6 150 3.7E-44 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 4 155 3.5E-54 T 13-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 SUPERFAMILY SSF53163 3 158 4.45E-42 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 Pfam PF01750 Hydrogenase maturation protease 21 146 5.9E-37 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 PRINTS PR00446 Hydrogen uptake protein signature 4 16 2.8E-28 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 PRINTS PR00446 Hydrogen uptake protein signature 68 84 2.8E-28 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 PRINTS PR00446 Hydrogen uptake protein signature 16 27 2.8E-28 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 PRINTS PR00446 Hydrogen uptake protein signature 36 53 2.8E-28 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_12355 25e2c1595a867274ea76c213b7d97a79 202 PRINTS PR00446 Hydrogen uptake protein signature 57 67 2.8E-28 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 Gene3D G3DSA:3.20.20.70 4 376 3.9E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 Pfam PF04055 Radical SAM superfamily 14 161 1.8E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 269 355 3.1E-17 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 SUPERFAMILY SSF102114 15 338 3.27E-42 T 13-10-2018 CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 Pfam PF13186 Iron-sulfur cluster-binding domain 270 329 1.0E-8 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 Pfam PF13353 4Fe-4S single cluster domain 16 138 1.8E-5 T 13-10-2018 CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 7 374 2.4E-150 T 13-10-2018 CS348_13910 06088bb4299fd2aab8438f4bc0e2ca3b 398 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 160 391 1.0E-14 T 13-10-2018 CS348_17720 b606fe547887b89f0ea223b91f9797f9 177 Gene3D G3DSA:2.60.40.1090 26 176 2.3E-28 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_17720 b606fe547887b89f0ea223b91f9797f9 177 Pfam PF00419 Fimbrial protein 30 176 1.2E-8 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_17720 b606fe547887b89f0ea223b91f9797f9 177 SUPERFAMILY SSF49401 29 176 3.48E-28 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_14955 1a8616c0672c7105bac966d9e34c6872 458 Pfam PF07690 Major Facilitator Superfamily 40 413 3.1E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_14955 1a8616c0672c7105bac966d9e34c6872 458 TIGRFAM TIGR02332 HpaX: 4-hydroxyphenylacetate permease 28 439 2.2E-258 T 13-10-2018 IPR012707 4-hydroxyphenylacetate permease GO:1900754|GO:1901241 CS348_14955 1a8616c0672c7105bac966d9e34c6872 458 Gene3D G3DSA:1.20.1250.20 23 453 6.8E-73 T 13-10-2018 CS348_14955 1a8616c0672c7105bac966d9e34c6872 458 SUPERFAMILY SSF103473 25 449 5.23E-78 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 Pfam PF00672 HAMP domain 188 236 3.8E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 SMART SM00387 349 461 4.5E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 SUPERFAMILY SSF55874 293 459 2.1E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 SMART SM00388 240 304 1.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 460 1.8E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 6.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 SMART SM00304 187 239 2.5E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 SUPERFAMILY SSF47384 223 303 7.46E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 Gene3D G3DSA:3.30.565.10 309 465 9.3E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 Pfam PF00512 His Kinase A (phospho-acceptor) domain 240 304 7.1E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 SUPERFAMILY SSF158472 188 236 4.05E-9 T 13-10-2018 CS348_09000 0c47f48d66c45915d61e19aa634d21be 467 Gene3D G3DSA:1.10.287.130 185 299 6.1E-27 T 13-10-2018 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 SUPERFAMILY SSF53067 250 473 9.62E-32 T 13-10-2018 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 253 439 9.1E-26 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 SUPERFAMILY SSF53067 6 245 3.69E-47 T 13-10-2018 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 Hamap MF_01535 Rhamnulokinase [rhaB]. 6 483 53.37 T 13-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 242 3.4E-28 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 Gene3D G3DSA:3.30.420.40 237 489 5.9E-106 T 13-10-2018 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 Gene3D G3DSA:3.30.420.40 1 236 6.3E-95 T 13-10-2018 CS348_23550 be98f9024870b8ef1a79ca13187f8951 489 TIGRFAM TIGR02627 rhamnulo_kin: rhamnulokinase 7 460 1.3E-230 T 13-10-2018 IPR013449 Rhamnulokinase GO:0008993|GO:0019301 KEGG: 00040+2.7.1.5|KEGG: 00051+2.7.1.5 CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 SUPERFAMILY SSF53383 4 362 3.75E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 Gene3D G3DSA:3.90.1150.10 260 358 5.5E-135 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 PIRSF PIRSF000525 1 362 1.4E-145 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 361 50.91 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 361 1.3E-152 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 208 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 Gene3D G3DSA:3.40.640.10 49 259 5.5E-135 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_15340 8ebd685a47d1cdb9ca36700eb4dec5c9 362 Pfam PF00266 Aminotransferase class-V 4 350 2.3E-70 T 13-10-2018 IPR000192 Aminotransferase class V domain CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 101 126 5.6E-10 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 151 170 5.6E-10 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 45 68 5.6E-10 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 69 91 5.6E-10 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 PRINTS PR01543 Arylamine N-acetyltransferase signature 21 44 5.6E-10 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 Pfam PF00797 N-acetyltransferase 21 256 7.5E-84 T 13-10-2018 IPR001447 Arylamine N-acetyltransferase GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 SUPERFAMILY SSF54001 2 269 4.41E-86 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 Gene3D G3DSA:3.30.1120.150 200 281 3.0E-43 T 13-10-2018 CS348_12080 6bc75c87869767d45e3fa8de4861e41f 281 Gene3D G3DSA:2.40.128.150 85 199 8.2E-46 T 13-10-2018 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 SUPERFAMILY SSF52799 304 531 5.23E-36 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 SMART SM00194 282 538 6.0E-4 T 13-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 340 353 5.2E-34 T 13-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 477 488 5.2E-34 T 13-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 159 177 5.2E-34 T 13-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 387 403 5.2E-34 T 13-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 427 441 5.2E-34 T 13-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 Gene3D G3DSA:4.10.1330.10 35 139 9.8E-50 T 13-10-2018 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 Gene3D G3DSA:1.20.120.260 161 293 1.6E-60 T 13-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 Pfam PF03545 Yersinia virulence determinant (YopE) 192 261 5.3E-32 T 13-10-2018 IPR014773 Virulence factor YopE, GAP domain CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 Gene3D G3DSA:3.90.190.10 319 538 7.6E-40 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 Pfam PF09119 SicP binding 41 121 6.3E-40 T 13-10-2018 IPR015203 SicP binding GO:0005615 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 Pfam PF00102 Protein-tyrosine phosphatase 354 516 7.1E-17 T 13-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 479 489 - T 13-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 SUPERFAMILY SSF56568 36 137 7.19E-42 T 13-10-2018 IPR011070 Globular protein, non-globular alpha/beta subunit CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 SUPERFAMILY SSF47233 157 291 3.14E-49 T 13-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily CS348_05630 f83629c33a5e08e9fb59d1e3622e5679 538 SMART SM00404 430 535 8.1E-14 T 13-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Gene3D G3DSA:3.40.50.670 390 623 1.5E-96 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 625 0.0 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 628 47.453 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 31 46 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 517 529 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 66 79 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 560 576 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 414 428 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 109 123 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 266 279 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 479 495 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR00418 DNA topoisomerase II family signature 497 514 5.2E-59 T 13-10-2018 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 1.9E-159 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 SUPERFAMILY SSF54211 217 382 3.6E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 3.4E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Gene3D G3DSA:3.30.565.10 2 215 2.0E-77 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 SMART SM00433 34 624 4.1E-211 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Gene3D G3DSA:3.30.230.10 216 389 2.0E-59 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Pfam PF00204 DNA gyrase B 218 384 4.7E-40 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Pfam PF01751 Toprim domain 413 521 1.9E-12 T 13-10-2018 IPR006171 TOPRIM domain CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 SUPERFAMILY SSF55874 5 215 4.02E-70 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 SMART SM00387 27 173 6.8E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 SUPERFAMILY SSF56719 388 621 7.85E-78 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CS348_03340 14f4b321f4c7f0769e1edae91ceddb42 630 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 556 620 7.8E-25 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Gene3D G3DSA:3.10.50.40 280 381 3.4E-42 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.665 T 13-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Gene3D G3DSA:3.10.50.40 172 274 1.2E-89 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Pfam PF13616 PPIC-type PPIASE domain 283 383 1.5E-26 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 SUPERFAMILY SSF109998 25 201 3.14E-44 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Gene3D G3DSA:1.10.4030.30 26 279 1.2E-89 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Pfam PF09312 SurA N-terminal domain 25 142 1.1E-46 T 13-10-2018 IPR015391 SurA N-terminal CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Pfam PF00639 PPIC-type PPIASE domain 178 272 2.3E-22 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 SUPERFAMILY SSF54534 283 384 4.25E-33 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 Gene3D G3DSA:1.10.4030.30 382 428 3.0E-9 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 SUPERFAMILY SSF54534 173 275 2.81E-28 T 13-10-2018 CS348_19880 3d11f9f389b0104fdab59e497632d9fe 428 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 321 342 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 Gene3D G3DSA:1.10.530.10 97 344 3.6E-84 T 13-10-2018 CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 SUPERFAMILY SSF49299 427 518 5.49E-8 T 13-10-2018 IPR035986 PKD domain superfamily CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 Gene3D G3DSA:2.60.40.10 422 518 7.5E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 Pfam PF00182 Chitinase class I 107 332 1.9E-34 T 13-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 Gene3D G3DSA:3.30.20.10 176 251 3.6E-84 T 13-10-2018 CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 SUPERFAMILY SSF53955 87 347 1.15E-61 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 SMART SM00089 431 519 1.0E-4 T 13-10-2018 IPR022409 PKD/Chitinase domain CS348_19130 0cd850b93f0f929afb4fcf8f0f6bcb77 587 Gene3D G3DSA:2.10.10.20 519 569 1.5E-5 T 13-10-2018 CS348_05100 ddece352468867783128ae0624520870 366 Pfam PF01728 FtsJ-like methyltransferase 186 280 1.7E-8 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 CS348_05100 ddece352468867783128ae0624520870 366 Gene3D G3DSA:3.30.70.2810 1 79 3.8E-35 T 13-10-2018 CS348_05100 ddece352468867783128ae0624520870 366 SUPERFAMILY SSF53335 184 296 2.75E-13 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_05100 ddece352468867783128ae0624520870 366 Gene3D G3DSA:3.40.50.150 176 357 3.5E-59 T 13-10-2018 CS348_05100 ddece352468867783128ae0624520870 366 Gene3D G3DSA:3.30.2300.20 80 175 8.9E-40 T 13-10-2018 CS348_05100 ddece352468867783128ae0624520870 366 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 355 86.283 T 13-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 CS348_05100 ddece352468867783128ae0624520870 366 PIRSF PIRSF028774 1 360 2.3E-189 T 13-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 CS348_16355 feb64544dee6fdd4afd9b9f34a36973d 251 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 12 249 1.6E-68 T 13-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 CS348_16355 feb64544dee6fdd4afd9b9f34a36973d 251 Pfam PF08241 Methyltransferase domain 47 138 2.4E-23 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CS348_16355 feb64544dee6fdd4afd9b9f34a36973d 251 Gene3D G3DSA:3.40.50.150 11 211 1.2E-36 T 13-10-2018 CS348_16355 feb64544dee6fdd4afd9b9f34a36973d 251 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 4 250 29.738 T 13-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 CS348_16355 feb64544dee6fdd4afd9b9f34a36973d 251 SUPERFAMILY SSF53335 10 246 2.34E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_20435 04b14dc336025d318acb59193c84ebb4 289 Gene3D G3DSA:1.10.10.60 56 121 5.8E-20 T 13-10-2018 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 Gene3D G3DSA:1.10.10.60 3 55 2.9E-27 T 13-10-2018 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 SUPERFAMILY SSF46689 57 108 3.0E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 SMART SM00871 126 288 3.3E-13 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CS348_20435 04b14dc336025d318acb59193c84ebb4 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 3.4E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 3.4E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 Gene3D G3DSA:3.20.80.10 122 289 6.2E-55 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_20435 04b14dc336025d318acb59193c84ebb4 289 Pfam PF12833 Helix-turn-helix domain 27 105 1.6E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 Pfam PF06445 GyrI-like small molecule binding domain 127 288 4.4E-20 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CS348_20435 04b14dc336025d318acb59193c84ebb4 289 SMART SM00342 21 104 1.9E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 SUPERFAMILY SSF46689 6 55 1.04E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_20435 04b14dc336025d318acb59193c84ebb4 289 SUPERFAMILY SSF55136 122 288 3.14E-52 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_16505 23998e5b449eeb94b7ab2b60c840b369 128 Pfam PF13985 YbgS-like protein 3 128 2.4E-55 T 13-10-2018 IPR020363 Uncharacterised protein family YbgS CS348_16505 23998e5b449eeb94b7ab2b60c840b369 128 ProDom PD079292 YBGS HOMEOBOX PRECURSOR SIGNAL PROBABLE SECRETED 45 128 1.0E-30 T 13-10-2018 IPR020363 Uncharacterised protein family YbgS CS348_13170 312888e016781d303f2f138ea82184eb 408 Pfam PF00294 pfkB family carbohydrate kinase 98 387 4.3E-70 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_13170 312888e016781d303f2f138ea82184eb 408 SMART SM00420 6 58 5.6E-11 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_13170 312888e016781d303f2f138ea82184eb 408 SUPERFAMILY SSF46785 4 59 1.71E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_13170 312888e016781d303f2f138ea82184eb 408 PRINTS PR00990 Ribokinase signature 128 147 5.0E-28 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_13170 312888e016781d303f2f138ea82184eb 408 PRINTS PR00990 Ribokinase signature 269 284 5.0E-28 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_13170 312888e016781d303f2f138ea82184eb 408 PRINTS PR00990 Ribokinase signature 101 122 5.0E-28 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_13170 312888e016781d303f2f138ea82184eb 408 PRINTS PR00990 Ribokinase signature 313 324 5.0E-28 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_13170 312888e016781d303f2f138ea82184eb 408 PRINTS PR00990 Ribokinase signature 201 214 5.0E-28 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_13170 312888e016781d303f2f138ea82184eb 408 SUPERFAMILY SSF53613 98 395 1.31E-68 T 13-10-2018 IPR029056 Ribokinase-like CS348_13170 312888e016781d303f2f138ea82184eb 408 Gene3D G3DSA:3.40.1190.20 84 403 4.4E-84 T 13-10-2018 IPR029056 Ribokinase-like CS348_13170 312888e016781d303f2f138ea82184eb 408 Gene3D G3DSA:1.10.10.10 1 51 3.6E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_13170 312888e016781d303f2f138ea82184eb 408 Hamap MF_01987 Ribokinase [rbsK]. 97 397 21.643 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CS348_13170 312888e016781d303f2f138ea82184eb 408 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 1.4E-12 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_18555 db799725129f0d9fb5921fbbe147dd26 696 SUPERFAMILY SSF56935 23 696 4.71E-148 T 13-10-2018 CS348_18555 db799725129f0d9fb5921fbbe147dd26 696 Pfam PF00593 TonB dependent receptor 253 694 5.1E-65 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_18555 db799725129f0d9fb5921fbbe147dd26 696 Gene3D G3DSA:2.170.130.10 28 165 1.7E-35 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_18555 db799725129f0d9fb5921fbbe147dd26 696 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 52 696 2.6E-140 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CS348_18555 db799725129f0d9fb5921fbbe147dd26 696 Gene3D G3DSA:2.40.170.20 166 696 1.5E-137 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_18555 db799725129f0d9fb5921fbbe147dd26 696 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 156 5.8E-24 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 SUPERFAMILY SSF51735 9 252 8.96E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 2.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.0E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 Gene3D G3DSA:3.40.50.720 1 253 6.3E-79 T 13-10-2018 CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 1.1E-134 T 13-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 CS348_04905 d3975ea39e23cce9357f31410cbed0d1 253 Pfam PF00106 short chain dehydrogenase 11 202 2.0E-55 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_19710 aeb346f9d95c7ace1bfda3a81afae538 360 Pfam PF00953 Glycosyl transferase family 4 99 284 2.2E-34 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CS348_19710 aeb346f9d95c7ace1bfda3a81afae538 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19710 aeb346f9d95c7ace1bfda3a81afae538 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 4.3E-162 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19710 aeb346f9d95c7ace1bfda3a81afae538 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.3E-6 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19710 aeb346f9d95c7ace1bfda3a81afae538 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.805 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19710 aeb346f9d95c7ace1bfda3a81afae538 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_07300 b266a4c0410d29fd995d6217b8845686 219 Pfam PF00936 BMC domain 162 208 2.8E-6 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07300 b266a4c0410d29fd995d6217b8845686 219 Pfam PF00936 BMC domain 36 107 2.3E-11 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07300 b266a4c0410d29fd995d6217b8845686 219 SUPERFAMILY SSF143414 159 211 9.42E-6 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_07300 b266a4c0410d29fd995d6217b8845686 219 Gene3D G3DSA:3.30.70.1810 108 219 2.1E-55 T 13-10-2018 CS348_07300 b266a4c0410d29fd995d6217b8845686 219 SMART SM00877 146 215 1.7E-5 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07300 b266a4c0410d29fd995d6217b8845686 219 SMART SM00877 35 132 7.7E-5 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07300 b266a4c0410d29fd995d6217b8845686 219 TIGRFAM TIGR04502 microcomp_EutL: microcompartment protein EutL 6 217 1.6E-101 T 13-10-2018 IPR030983 Ethanolamine utilization protein EutL GO:0005198 CS348_07300 b266a4c0410d29fd995d6217b8845686 219 Gene3D G3DSA:3.30.70.1810 8 107 1.3E-44 T 13-10-2018 CS348_07300 b266a4c0410d29fd995d6217b8845686 219 PIRSF PIRSF012290 1 219 3.6E-86 T 13-10-2018 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0031469 CS348_20800 b71f546111e061ed43516c78dede5a03 265 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 17 238 1.3E-86 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_20800 b71f546111e061ed43516c78dede5a03 265 Pfam PF01791 DeoC/LacD family aldolase 17 251 6.0E-51 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_20800 b71f546111e061ed43516c78dede5a03 265 Gene3D G3DSA:3.20.20.70 6 265 5.4E-106 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_20800 b71f546111e061ed43516c78dede5a03 265 SUPERFAMILY SSF51569 12 252 1.36E-81 T 13-10-2018 CS348_20800 b71f546111e061ed43516c78dede5a03 265 SMART SM01133 16 252 4.6E-79 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_20800 b71f546111e061ed43516c78dede5a03 265 PIRSF PIRSF001357 11 261 2.5E-77 T 13-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_20800 b71f546111e061ed43516c78dede5a03 265 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 7 265 54.396 T 13-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 CS348_14445 68cc0a7639d504f97c1f89e651be0911 164 SUPERFAMILY SSF49401 19 164 6.96E-23 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_14445 68cc0a7639d504f97c1f89e651be0911 164 Gene3D G3DSA:2.60.40.1090 28 163 4.2E-24 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_22620 e418869ca9243ad9f18a16057a38d465 287 Gene3D G3DSA:3.30.1240.10 84 191 5.7E-59 T 13-10-2018 CS348_22620 e418869ca9243ad9f18a16057a38d465 287 Gene3D G3DSA:3.40.50.1000 2 263 5.7E-59 T 13-10-2018 IPR023214 HAD superfamily CS348_22620 e418869ca9243ad9f18a16057a38d465 287 ProSitePatterns PS01228 Hypothetical cof family signature 1. 2 13 - T 13-10-2018 CS348_22620 e418869ca9243ad9f18a16057a38d465 287 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 3 262 7.6E-46 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_22620 e418869ca9243ad9f18a16057a38d465 287 SUPERFAMILY SSF56784 2 263 7.59E-56 T 13-10-2018 IPR036412 HAD-like superfamily CS348_22620 e418869ca9243ad9f18a16057a38d465 287 Pfam PF08282 haloacid dehalogenase-like hydrolase 3 262 3.6E-48 T 13-10-2018 CS348_22620 e418869ca9243ad9f18a16057a38d465 287 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 13-10-2018 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 Gene3D G3DSA:2.40.10.220 690 799 2.8E-13 T 13-10-2018 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 Gene3D G3DSA:3.90.550.10 262 483 1.0E-80 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 147 830 0.0 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 SUPERFAMILY SSF53448 272 550 8.19E-51 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 Pfam PF07238 PilZ domain 694 790 1.4E-12 T 13-10-2018 IPR009875 PilZ domain GO:0035438 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 Pfam PF00535 Glycosyl transferase family 2 276 446 6.1E-35 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 SUPERFAMILY SSF141371 695 777 4.71E-9 T 13-10-2018 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 199 219 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 227 252 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 553 572 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 363 387 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 524 550 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 667 688 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 282 301 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_01135 6c14bd25dae6e574e4d9aece427e1a69 874 PRINTS PR01439 Cellulose synthase subunit A signature 593 612 3.7E-56 T 13-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 Hamap MF_01578 Quinate/shikimate dehydrogenase [ydiB]. 1 288 76.281 T 13-10-2018 IPR022872 Quinate/Shikimate dehydrogenase GO:0004764|GO:0030266|GO:0052733|GO:0052734|GO:0055114 KEGG: 00400+1.1.1.282|MetaCyc: PWY-6163 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 Gene3D G3DSA:3.40.50.10860 12 273 5.9E-102 T 13-10-2018 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 SUPERFAMILY SSF53223 5 106 1.5E-29 T 13-10-2018 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 12 94 6.4E-26 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 7 286 30.886 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 Gene3D G3DSA:3.40.50.720 108 258 5.9E-102 T 13-10-2018 CS348_13285 03d6ade6a6e185e5c1f803c1361c2d08 288 SUPERFAMILY SSF51735 107 283 5.31E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_06715 53854f39411802005842ca72c3c5c5b3 514 SMART SM00062 44 269 1.8E-39 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_06715 53854f39411802005842ca72c3c5c5b3 514 Gene3D G3DSA:1.10.530.10 292 450 9.6E-32 T 13-10-2018 CS348_06715 53854f39411802005842ca72c3c5c5b3 514 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 472 46.785 T 13-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 CS348_06715 53854f39411802005842ca72c3c5c5b3 514 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 310 338 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CS348_06715 53854f39411802005842ca72c3c5c5b3 514 Gene3D G3DSA:3.40.190.10 39 264 3.8E-55 T 13-10-2018 CS348_06715 53854f39411802005842ca72c3c5c5b3 514 SUPERFAMILY SSF53955 245 444 7.79E-34 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_06715 53854f39411802005842ca72c3c5c5b3 514 Gene3D G3DSA:3.40.190.10 129 225 3.8E-55 T 13-10-2018 CS348_06715 53854f39411802005842ca72c3c5c5b3 514 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 268 2.0E-25 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_06715 53854f39411802005842ca72c3c5c5b3 514 Pfam PF01464 Transglycosylase SLT domain 297 399 2.7E-22 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_06715 53854f39411802005842ca72c3c5c5b3 514 SUPERFAMILY SSF53850 45 268 2.64E-31 T 13-10-2018 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 Gene3D G3DSA:3.30.70.20 173 233 5.8E-12 T 13-10-2018 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 110 303 4.9E-16 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 151 167 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 SUPERFAMILY SSF54862 153 232 2.81E-17 T 13-10-2018 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 SUPERFAMILY SSF56014 110 327 1.46E-29 T 13-10-2018 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 Pfam PF14697 4Fe-4S dicluster domain 176 224 8.1E-9 T 13-10-2018 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 212 223 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 23 82 6.3E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 TIGRFAM TIGR02912 sulfite_red_C: sulfite reductase, subunit C 4 321 5.8E-164 T 13-10-2018 IPR014261 Sulphite reductase, subunit C CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 SUPERFAMILY SSF55124 18 83 3.6E-16 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 Gene3D G3DSA:3.90.480.20 4 97 1.2E-9 T 13-10-2018 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 PRINTS PR00397 Sirohaem Fe-binding site signature 151 169 5.2E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_06800 c9ebd6d3ae37c038d62298a6d3c15c20 337 PRINTS PR00397 Sirohaem Fe-binding site signature 110 128 5.2E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_10100 5e241c25f68b90f9d5d48a09acf0f728 142 PIRSF PIRSF006276 1 141 5.2E-46 T 13-10-2018 IPR006015 Universal stress protein A CS348_10100 5e241c25f68b90f9d5d48a09acf0f728 142 Pfam PF00582 Universal stress protein family 3 138 5.5E-16 T 13-10-2018 IPR006016 UspA CS348_10100 5e241c25f68b90f9d5d48a09acf0f728 142 SUPERFAMILY SSF52402 3 138 5.11E-25 T 13-10-2018 CS348_10100 5e241c25f68b90f9d5d48a09acf0f728 142 Gene3D G3DSA:3.40.50.620 2 142 1.3E-32 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 5.5E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 5.5E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 5.5E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 Gene3D G3DSA:3.40.190.290 89 295 3.5E-63 T 13-10-2018 CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 SUPERFAMILY SSF53850 92 289 3.98E-19 T 13-10-2018 CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 58.856 T 13-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 Pfam PF03466 LysR substrate binding domain 93 288 3.8E-12 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 Gene3D G3DSA:1.10.10.10 2 83 3.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 SUPERFAMILY SSF46785 4 110 7.1E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.1E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04635 4c1fdc3a07adac726de63994a39db3a7 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 3.8E-113 T 13-10-2018 IPR017685 HTH-type transcriptional regulator ArgP CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 9.2E-113 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.856 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 Gene3D G3DSA:3.40.190.10 6 216 8.9E-85 T 13-10-2018 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 5.9E-78 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 SUPERFAMILY SSF53850 5 219 1.36E-86 T 13-10-2018 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 Gene3D G3DSA:3.30.160.40 221 306 3.3E-32 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 PIRSF PIRSF001438 1 311 2.0E-122 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 Gene3D G3DSA:3.40.190.10 100 199 8.9E-85 T 13-10-2018 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 SUPERFAMILY SSF54782 220 308 1.7E-28 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 4.6E-24 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 5.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 5.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 5.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 5.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24105 2f3e73ca3d53203e8e966792efe99f37 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 5.0E-49 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 Gene3D G3DSA:3.40.50.300 219 388 4.3E-52 T 13-10-2018 CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 Pfam PF00270 DEAD/DEAH box helicase 28 198 6.5E-47 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 428 49.686 T 13-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 Gene3D G3DSA:3.40.50.300 1 212 2.9E-72 T 13-10-2018 CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 SUPERFAMILY SSF52540 76 361 3.96E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 SMART SM00487 23 223 2.8E-59 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 SMART SM00490 262 343 2.7E-30 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_06585 231e5af598bdfd52d82ecc4c06c307a3 444 Pfam PF00271 Helicase conserved C-terminal domain 235 343 2.1E-29 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 SUPERFAMILY SSF56553 53 178 1.45E-41 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Gene3D G3DSA:2.170.120.12 53 177 3.6E-86 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 13-10-2018 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 SUPERFAMILY SSF55257 6 231 1.57E-30 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Gene3D G3DSA:3.30.1360.10 17 228 3.6E-86 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.651 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 4.3E-113 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Gene3D G3DSA:1.10.150.20 244 329 9.7E-39 T 13-10-2018 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 SMART SM00662 23 234 3.0E-105 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_02135 456bfd9236c5cfd90803aed14a8ec2d0 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.7E-23 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_08425 34fe2be7182c6f67fb828f41264a26c0 185 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_08425 34fe2be7182c6f67fb828f41264a26c0 185 Pfam PF08534 Redoxin 41 169 3.1E-23 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CS348_08425 34fe2be7182c6f67fb828f41264a26c0 185 SUPERFAMILY SSF52833 46 177 2.37E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_08425 34fe2be7182c6f67fb828f41264a26c0 185 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 177 1.0E-80 T 13-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 CS348_08425 34fe2be7182c6f67fb828f41264a26c0 185 Gene3D G3DSA:3.40.30.10 36 185 2.6E-45 T 13-10-2018 CS348_18525 81ca383718b6d136076d7fc314830706 483 Pfam PF03972 MmgE/PrpD family 18 463 1.7E-159 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 CS348_18525 81ca383718b6d136076d7fc314830706 483 SUPERFAMILY SSF103378 13 482 4.84E-160 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 CS348_18525 81ca383718b6d136076d7fc314830706 483 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 13 483 2.4E-274 T 13-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 CS348_18525 81ca383718b6d136076d7fc314830706 483 Gene3D G3DSA:1.10.4100.10 22 461 3.8E-210 T 13-10-2018 CS348_18525 81ca383718b6d136076d7fc314830706 483 Gene3D G3DSA:3.30.1330.120 285 426 3.8E-210 T 13-10-2018 CS348_14250 7d140984b6d84165701e731a462062ed 223 SMART SM00448 1 112 5.7E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_14250 7d140984b6d84165701e731a462062ed 223 SUPERFAMILY SSF52172 1 173 7.54E-38 T 13-10-2018 IPR011006 CheY-like superfamily CS348_14250 7d140984b6d84165701e731a462062ed 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 1.6E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_14250 7d140984b6d84165701e731a462062ed 223 Pfam PF00072 Response regulator receiver domain 3 112 1.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_14250 7d140984b6d84165701e731a462062ed 223 Gene3D G3DSA:3.40.50.2300 1 121 1.3E-39 T 13-10-2018 CS348_14250 7d140984b6d84165701e731a462062ed 223 Gene3D G3DSA:1.10.10.10 123 223 5.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14250 7d140984b6d84165701e731a462062ed 223 SMART SM00862 145 220 2.9E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_05795 e9318cfd4eb526a7c4ce8b86a82e84f1 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_05795 e9318cfd4eb526a7c4ce8b86a82e84f1 180 Pfam PF12838 4Fe-4S dicluster domain 39 89 1.3E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_05795 e9318cfd4eb526a7c4ce8b86a82e84f1 180 SUPERFAMILY SSF54862 18 116 4.06E-23 T 13-10-2018 CS348_05795 e9318cfd4eb526a7c4ce8b86a82e84f1 180 Gene3D G3DSA:3.30.70.3270 18 136 1.2E-23 T 13-10-2018 CS348_05795 e9318cfd4eb526a7c4ce8b86a82e84f1 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SUPERFAMILY SSF52113 596 669 9.32E-19 T 13-10-2018 IPR036420 BRCT domain superfamily CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 9.0E-36 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:2.20.70.80 391 431 5.9E-22 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Hamap MF_01588 DNA ligase [ligA]. 2 669 54.224 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 665 3.4E-275 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 PIRSF PIRSF001604 1 671 1.5E-252 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SMART SM00532 3 448 1.1E-292 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:1.10.150.20 506 586 7.5E-31 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Pfam PF14520 Helix-hairpin-helix domain 446 502 3.3E-5 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:1.10.150.20 432 505 3.5E-30 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 596 668 6.0E-12 T 13-10-2018 IPR001357 BRCT domain CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:3.40.50.10190 592 671 8.0E-26 T 13-10-2018 IPR036420 BRCT domain superfamily CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SUPERFAMILY SSF56091 2 316 2.16E-122 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SMART SM00278 480 499 1.3 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SMART SM00278 446 465 22.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SMART SM00278 512 531 600.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SMART SM00278 544 563 37.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SMART SM00292 595 670 2.1E-12 T 13-10-2018 IPR001357 BRCT domain CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 3.0E-11 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 4.2E-140 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:1.10.287.610 1 69 3.0E-31 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SUPERFAMILY SSF47781 403 583 8.9E-61 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 SUPERFAMILY SSF50249 318 400 9.25E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:3.30.470.30 70 253 6.0E-102 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:2.40.50.140 317 390 4.5E-35 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Gene3D G3DSA:3.30.1490.70 78 316 6.0E-102 T 13-10-2018 CS348_07435 b3a1571f162b3f0d99689b9ffe9fac94 671 Pfam PF12826 Helix-hairpin-helix motif 510 573 4.7E-22 T 13-10-2018 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 394 1.2E-178 T 13-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 SUPERFAMILY SSF51690 120 392 1.35E-86 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 PIRSF PIRSF000484 1 397 1.1E-61 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 395 50.405 T 13-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 394 4.4E-83 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 Gene3D G3DSA:3.20.140.10 1 400 3.3E-163 T 13-10-2018 CS348_15215 3f12027e2d82e8fee29c18d5adb8ab26 400 SUPERFAMILY SSF54675 2 137 2.06E-44 T 13-10-2018 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 325 334 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Pfam PF02954 Bacterial regulatory protein, Fis family 366 406 6.3E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Pfam PF14532 Sigma-54 interaction domain 143 278 7.9E-18 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Gene3D G3DSA:1.10.8.60 284 352 9.5E-13 T 13-10-2018 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Gene3D G3DSA:3.40.50.2300 1 133 6.1E-32 T 13-10-2018 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 SUPERFAMILY SSF52172 6 185 1.34E-36 T 13-10-2018 IPR011006 CheY-like superfamily CS348_07650 670aa4109b9e70151b65a083a166eeea 415 SUPERFAMILY SSF46689 358 409 2.83E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 SMART SM00448 6 117 3.9E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Pfam PF00072 Response regulator receiver domain 8 116 1.7E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Gene3D G3DSA:1.10.10.60 353 413 9.4E-13 T 13-10-2018 CS348_07650 670aa4109b9e70151b65a083a166eeea 415 SUPERFAMILY SSF52540 141 342 3.49E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_07650 670aa4109b9e70151b65a083a166eeea 415 Gene3D G3DSA:3.40.50.300 140 283 1.3E-30 T 13-10-2018 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 Gene3D G3DSA:2.40.50.140 1 114 1.7E-51 T 13-10-2018 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 7.9E-34 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 Gene3D G3DSA:2.30.30.30 115 195 7.4E-34 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 SUPERFAMILY SSF50104 127 269 1.87E-59 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CS348_02025 1222dfa2ea921910843a6bba597e2009 273 Gene3D G3DSA:4.10.950.10 196 273 4.0E-36 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 SUPERFAMILY SSF50249 3 125 5.48E-50 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_02025 1222dfa2ea921910843a6bba597e2009 273 SMART SM01383 42 118 1.9E-48 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 4 272 1.3E-131 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 PIRSF PIRSF002158 12 273 5.2E-100 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.056 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 SMART SM01382 124 251 5.1E-89 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CS348_02025 1222dfa2ea921910843a6bba597e2009 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 2.4E-55 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 SUPERFAMILY SSF53187 1 406 7.11E-85 T 13-10-2018 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 PIRSF PIRSF037215 1 408 9.6E-183 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 Gene3D G3DSA:3.40.630.10 4 400 1.1E-181 T 13-10-2018 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 Pfam PF01546 Peptidase family M20/M25/M40 139 402 1.4E-16 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 Pfam PF07687 Peptidase dimerisation domain 206 303 2.1E-12 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CS348_14270 442b23b02b7023d475dd45d410a357ce 409 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 Hamap MF_00550 Peptidase T [pepT]. 1 404 56.287 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 Gene3D G3DSA:3.30.70.360 208 319 1.1E-181 T 13-10-2018 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 406 7.1E-158 T 13-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 CS348_14270 442b23b02b7023d475dd45d410a357ce 409 SUPERFAMILY SSF55031 208 320 2.88E-44 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CS348_07275 ed8fba6678255d3855ce95c7a7889125 398 Gene3D G3DSA:3.40.50.1970 11 202 4.1E-49 T 13-10-2018 CS348_07275 ed8fba6678255d3855ce95c7a7889125 398 SUPERFAMILY SSF56796 22 393 6.41E-113 T 13-10-2018 CS348_07275 ed8fba6678255d3855ce95c7a7889125 398 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 191 219 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_07275 ed8fba6678255d3855ce95c7a7889125 398 Pfam PF00465 Iron-containing alcohol dehydrogenase 27 387 1.8E-111 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_07275 ed8fba6678255d3855ce95c7a7889125 398 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 278 298 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_07275 ed8fba6678255d3855ce95c7a7889125 398 Gene3D G3DSA:1.20.1090.10 204 397 1.2E-63 T 13-10-2018 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 312 2.4E-124 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 3 753 37.447 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 752 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 SUPERFAMILY SSF51726 391 752 2.09E-120 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 PIRSF PIRSF000382 2 754 0.0 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 426 748 5.0E-160 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 Gene3D G3DSA:3.20.20.210 7 519 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 Gene3D G3DSA:3.20.20.210 384 751 0.0 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CS348_23980 bf974c1e2b24a68be715dd0d96fd9118 754 SUPERFAMILY SSF51726 4 389 1.44E-111 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CS348_00195 332dde2e407af1fbd2a8132ed97484ec 286 SUPERFAMILY SSF103481 184 285 2.09E-12 T 13-10-2018 CS348_00195 332dde2e407af1fbd2a8132ed97484ec 286 SUPERFAMILY SSF103481 49 144 9.68E-12 T 13-10-2018 CS348_00195 332dde2e407af1fbd2a8132ed97484ec 286 Pfam PF00892 EamA-like transporter family 149 283 8.8E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_17350 8217061934fb8bd078b3f68e754406f5 122 Pfam PF04237 YjbR 15 106 3.6E-21 T 13-10-2018 IPR007351 Uncharacterised protein YjbR CS348_17350 8217061934fb8bd078b3f68e754406f5 122 SUPERFAMILY SSF142906 12 119 3.01E-37 T 13-10-2018 IPR038056 YjbR-like superfamily CS348_17350 8217061934fb8bd078b3f68e754406f5 122 Gene3D G3DSA:3.90.1150.30 3 122 4.2E-35 T 13-10-2018 IPR038056 YjbR-like superfamily CS348_06825 b1fddf84a66c9796d4035cfe588de5cd 243 Gene3D G3DSA:3.40.1280.10 1 164 4.6E-69 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_06825 b1fddf84a66c9796d4035cfe588de5cd 243 Pfam PF00588 SpoU rRNA Methylase family 5 154 2.4E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CS348_06825 b1fddf84a66c9796d4035cfe588de5cd 243 PIRSF PIRSF004808 1 243 9.3E-80 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 CS348_06825 b1fddf84a66c9796d4035cfe588de5cd 243 Gene3D G3DSA:1.10.8.590 166 243 1.7E-35 T 13-10-2018 CS348_06825 b1fddf84a66c9796d4035cfe588de5cd 243 SUPERFAMILY SSF75217 4 164 2.68E-39 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_06825 b1fddf84a66c9796d4035cfe588de5cd 243 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 241 4.7E-96 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Pfam PF00258 Flavodoxin 256 388 2.0E-12 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Gene3D G3DSA:3.40.50.360 253 395 3.5E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 SUPERFAMILY SSF57802 425 475 3.53E-18 T 13-10-2018 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 SUPERFAMILY SSF56281 8 285 1.17E-52 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 SUPERFAMILY SSF52218 251 396 2.58E-34 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Pfam PF00753 Metallo-beta-lactamase superfamily 34 174 2.5E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 PIRSF PIRSF005243 1 399 1.7E-162 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 SMART SM00849 34 210 4.7E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Gene3D G3DSA:2.20.28.10 423 479 6.1E-24 T 13-10-2018 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Gene3D G3DSA:3.60.15.10 1 247 7.9E-110 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 PRINTS PR00163 Rubredoxin signature 425 441 7.3E-7 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 PRINTS PR00163 Rubredoxin signature 455 471 7.3E-7 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Hamap MF_01312 Anaerobic nitric oxide reductase flavorubredoxin [norV]. 1 475 97.243 T 13-10-2018 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin GO:0005506|GO:0016966 CS348_05835 f8959c7fe7ffaa07cb5178a0ce048afa 479 Pfam PF00301 Rubredoxin 425 471 2.9E-20 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CS348_22175 4f4a828cd8bd0b1f1f89705fc3f09d6e 476 SUPERFAMILY SSF103473 10 442 2.49E-30 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_22175 4f4a828cd8bd0b1f1f89705fc3f09d6e 476 Pfam PF13347 MFS/sugar transport protein 10 436 1.2E-84 T 13-10-2018 CS348_22175 4f4a828cd8bd0b1f1f89705fc3f09d6e 476 Gene3D G3DSA:1.20.1250.20 8 431 4.3E-12 T 13-10-2018 CS348_22175 4f4a828cd8bd0b1f1f89705fc3f09d6e 476 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 59 84 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 CS348_22175 4f4a828cd8bd0b1f1f89705fc3f09d6e 476 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 8 450 7.2E-173 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_22790 a8920c60d6eb5d4402db5bad2d4edbe6 211 SUPERFAMILY SSF51391 6 204 4.97E-64 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_22790 a8920c60d6eb5d4402db5bad2d4edbe6 211 Gene3D G3DSA:3.20.20.70 8 207 2.3E-60 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_22790 a8920c60d6eb5d4402db5bad2d4edbe6 211 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 20 202 1.6E-57 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_22790 a8920c60d6eb5d4402db5bad2d4edbe6 211 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 10 207 20.103 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_22790 a8920c60d6eb5d4402db5bad2d4edbe6 211 Pfam PF02581 Thiamine monophosphate synthase 20 189 5.0E-55 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_11905 f14ca974cd75b98f0cce149d8678abef 437 PIRSF PIRSF006304 1 436 1.3E-157 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 CS348_11905 f14ca974cd75b98f0cce149d8678abef 437 Pfam PF03611 PTS system sugar-specific permease component 4 385 4.9E-65 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CS348_11905 f14ca974cd75b98f0cce149d8678abef 437 TIGRFAM TIGR00827 EIIC-GAT: PTS system, galactitol-specific IIC component 5 410 2.9E-208 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 SUPERFAMILY SSF54719 84 192 9.56E-46 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 SUPERFAMILY SSF46609 1 84 1.57E-36 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 PIRSF PIRSF000349 1 193 6.7E-88 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.4E-40 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 Gene3D G3DSA:1.10.287.990 20 82 1.6E-27 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 1.7E-35 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 Gene3D G3DSA:2.40.500.20 83 193 8.2E-45 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 2.2E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.2E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.2E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 2.2E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_12910 7b59049fd7eb6a6f8025e882db3c7308 193 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 2.2E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_20850 fc0980594811dfa083085ff235ed945d 145 PIRSF PIRSF029225 2 131 3.6E-47 T 13-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_20850 fc0980594811dfa083085ff235ed945d 145 SUPERFAMILY SSF102220 27 136 9.02E-34 T 13-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_20850 fc0980594811dfa083085ff235ed945d 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 3.9E-45 T 13-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_20850 fc0980594811dfa083085ff235ed945d 145 TIGRFAM TIGR00664 DNA_III_psi: DNA polymerase III, psi subunit 1 125 2.9E-53 T 13-10-2018 IPR018382 DNA polymerase III, psi subunit, subgroup GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_20850 fc0980594811dfa083085ff235ed945d 145 Gene3D G3DSA:3.40.50.10220 33 137 4.8E-39 T 13-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_20850 fc0980594811dfa083085ff235ed945d 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 6.0E-45 T 13-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_23615 438ddc4d763e604a26e8da772469582a 211 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 204 3.0E-66 T 13-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 CS348_23615 438ddc4d763e604a26e8da772469582a 211 Gene3D G3DSA:1.20.950.20 1 211 4.5E-70 T 13-10-2018 CS348_23615 438ddc4d763e604a26e8da772469582a 211 SUPERFAMILY SSF81342 4 205 7.14E-55 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_23615 438ddc4d763e604a26e8da772469582a 211 Pfam PF01292 Prokaryotic cytochrome b561 9 184 9.9E-22 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Gene3D G3DSA:2.60.40.3110 273 362 7.6E-35 T 13-10-2018 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Gene3D G3DSA:2.60.40.2610 687 779 7.4E-22 T 13-10-2018 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Pfam PF00577 Outer membrane usher protein 203 774 8.6E-163 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 SUPERFAMILY SSF141729 38 162 5.23E-29 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Pfam PF13954 PapC N-terminal domain 39 189 1.6E-40 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Gene3D G3DSA:3.10.20.410 38 165 2.7E-28 T 13-10-2018 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Pfam PF13953 PapC C-terminal domain 784 848 5.0E-15 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 Gene3D G3DSA:2.60.40.2070 781 873 5.0E-12 T 13-10-2018 CS348_19385 3d230246bcbca0aab3682c7f1308c75f 881 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 315 325 - T 13-10-2018 IPR018030 Fimbrial membrane usher, conserved site CS348_01530 b1c39f4c587edbab45c8302773f99890 177 Gene3D G3DSA:3.40.50.300 1 175 5.4E-65 T 13-10-2018 CS348_01530 b1c39f4c587edbab45c8302773f99890 177 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 11 172 9.6E-72 T 13-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 CS348_01530 b1c39f4c587edbab45c8302773f99890 177 SUPERFAMILY SSF52540 4 172 1.14E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01530 b1c39f4c587edbab45c8302773f99890 177 Pfam PF01202 Shikimate kinase 17 170 1.2E-11 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 225 9.2E-53 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 Pfam PF01479 S4 domain 8 52 1.3E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 SUPERFAMILY SSF55174 7 62 3.36E-13 T 13-10-2018 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 Pfam PF00849 RNA pseudouridylate synthase 69 194 5.2E-15 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 Gene3D G3DSA:3.30.70.1560 134 207 5.8E-57 T 13-10-2018 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 Gene3D G3DSA:3.30.70.580 70 228 5.8E-57 T 13-10-2018 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 SUPERFAMILY SSF55120 69 229 6.96E-38 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 Gene3D G3DSA:3.10.290.10 1 62 1.2E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_22640 8ba58c594de447aefbe876e7b0d69f14 289 SMART SM00363 7 63 2.5E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 Gene3D G3DSA:3.50.50.60 1 379 2.8E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 SUPERFAMILY SSF51905 2 373 5.34E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 308 7.4E-7 T 13-10-2018 CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 7.4E-7 T 13-10-2018 CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 7.4E-7 T 13-10-2018 CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 Pfam PF01494 FAD binding domain 6 172 7.3E-10 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_13320 eb02bf8a71655f40d4d20a101dcf7e18 428 SUPERFAMILY SSF54373 179 282 5.49E-24 T 13-10-2018 CS348_12380 597707afed8ff0bb3a80c56054086544 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 2.9E-27 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_12380 597707afed8ff0bb3a80c56054086544 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 5.8E-30 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_12380 597707afed8ff0bb3a80c56054086544 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 18.702 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_12380 597707afed8ff0bb3a80c56054086544 113 PIRSF PIRSF004761 1 113 1.5E-35 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_12380 597707afed8ff0bb3a80c56054086544 113 Gene3D G3DSA:3.30.2320.80 1 113 6.9E-26 T 13-10-2018 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 SUPERFAMILY SSF50331 235 350 2.43E-21 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 Gene3D G3DSA:3.40.50.300 10 230 8.4E-57 T 13-10-2018 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 Pfam PF03459 TOBE domain 290 350 3.3E-15 T 13-10-2018 IPR005116 Transport-associated OB, type 1 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 Gene3D G3DSA:2.40.50.100 289 351 7.6E-15 T 13-10-2018 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 SMART SM00382 23 206 5.4E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 Pfam PF00005 ABC transporter 18 156 8.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 SUPERFAMILY SSF52540 8 220 1.41E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 288 351 1.0E-22 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 6.4E-161 T 13-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 CS348_16420 dd9cbb9621634684a360a5fd4cf55d70 352 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_18795 7c2f3ac3b7c1ef2b08ad8dee79313695 255 Gene3D G3DSA:3.60.110.10 1 255 1.1E-80 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_18795 7c2f3ac3b7c1ef2b08ad8dee79313695 255 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 137 157 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site CS348_18795 7c2f3ac3b7c1ef2b08ad8dee79313695 255 SUPERFAMILY SSF56317 4 249 4.97E-60 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_18795 7c2f3ac3b7c1ef2b08ad8dee79313695 255 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 7.3E-31 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CS348_16130 e8215d0a370b5e129309f4c70fa8582b 421 Pfam PF07350 Protein of unknown function (DUF1479) 16 419 2.0E-141 T 13-10-2018 IPR010856 Protein of unknown function DUF1479 CS348_16130 e8215d0a370b5e129309f4c70fa8582b 421 Gene3D G3DSA:2.60.120.330 1 421 1.5E-164 T 13-10-2018 IPR027443 Isopenicillin N synthase-like CS348_16130 e8215d0a370b5e129309f4c70fa8582b 421 SUPERFAMILY SSF51197 5 419 4.39E-154 T 13-10-2018 CS348_06830 4e2a8041dc999611661c61010062ed83 164 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site CS348_06830 4e2a8041dc999611661c61010062ed83 164 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 1.9E-46 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CS348_06830 4e2a8041dc999611661c61010062ed83 164 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 4.5E-66 T 13-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 CS348_06830 4e2a8041dc999611661c61010062ed83 164 SUPERFAMILY SSF46785 2 133 9.6E-36 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_06830 4e2a8041dc999611661c61010062ed83 164 Pfam PF02082 Transcriptional regulator 1 83 5.5E-27 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CS348_06830 4e2a8041dc999611661c61010062ed83 164 Gene3D G3DSA:1.10.10.10 1 144 3.7E-56 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06830 4e2a8041dc999611661c61010062ed83 164 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 164 46.785 T 13-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 SUPERFAMILY SSF100920 384 539 8.11E-62 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 469 485 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 138 158 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 198 208 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 31 43 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 54 62 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 334 350 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 3 16 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 388 407 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 PRINTS PR00301 70kDa heat shock protein signature 365 385 8.2E-81 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Gene3D G3DSA:1.20.1270.10 524 603 6.9E-31 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 SUPERFAMILY SSF100934 507 602 3.01E-30 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 SUPERFAMILY SSF53067 4 183 2.59E-65 T 13-10-2018 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Gene3D G3DSA:3.30.420.40 5 379 7.7E-172 T 13-10-2018 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Gene3D G3DSA:3.30.420.40 180 366 7.7E-172 T 13-10-2018 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 7.6E-294 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 SUPERFAMILY SSF53067 187 382 1.17E-68 T 13-10-2018 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Gene3D G3DSA:3.90.640.10 229 316 7.7E-172 T 13-10-2018 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Pfam PF00012 Hsp70 protein 4 602 2.3E-269 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Gene3D G3DSA:2.60.34.10 383 523 1.1E-68 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 634 37.133 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 CS348_20305 65be347f4a81b8fd7393db0e32efaf1b 638 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Gene3D G3DSA:2.40.30.170 241 321 1.3E-26 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 SUPERFAMILY SSF111369 176 323 2.09E-13 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 318 8.4E-17 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 SUPERFAMILY SSF111369 112 170 1.83E-5 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Gene3D G3DSA:2.40.50.100 206 240 1.3E-26 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Gene3D G3DSA:1.10.287.470 76 108 1.0E-15 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 SUPERFAMILY SSF111369 40 98 3.79E-9 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Gene3D G3DSA:2.40.50.100 42 75 1.0E-15 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Gene3D G3DSA:1.10.287.470 110 172 1.8E-11 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Gene3D G3DSA:1.10.287.470 176 205 1.3E-26 T 13-10-2018 CS348_16235 78515101bd5b87b27f6d07e312dc5fb0 331 Hamap MF_01304 UPF0194 membrane protein YbhG [ybhG]. 1 327 52.185 T 13-10-2018 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 144 167 - T 13-10-2018 IPR025505 FHIPEP conserved site CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PIRSF PIRSF005419 7 675 9.9E-201 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 Gene3D G3DSA:1.10.490.80 575 669 2.7E-22 T 13-10-2018 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 21 669 5.7E-279 T 13-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 239 253 2.0E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 139 155 2.0E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 158 176 2.0E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 188 205 2.0E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 77 96 2.0E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 40 53 2.0E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 Gene3D G3DSA:1.10.8.540 484 573 1.2E-30 T 13-10-2018 CS348_13005 cba7f767f7589604c0fa2f696c08c387 681 Pfam PF00771 FHIPEP family 34 660 8.1E-201 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10765 b690318621b67e564b47c07e11a51d8b 153 Pfam PF03692 Putative zinc- or iron-chelating domain 29 97 4.7E-8 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein CS348_10765 b690318621b67e564b47c07e11a51d8b 153 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 7 150 42.561 T 13-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 CS348_10765 b690318621b67e564b47c07e11a51d8b 153 PIRSF PIRSF006173 3 150 1.4E-68 T 13-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 CS348_20325 8b19c0066f64c3d1b0b62753b991cd93 196 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 1.4E-40 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_20325 8b19c0066f64c3d1b0b62753b991cd93 196 Gene3D G3DSA:3.40.980.10 1 195 2.9E-64 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_20325 8b19c0066f64c3d1b0b62753b991cd93 196 SMART SM00852 7 153 4.4E-23 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_20325 8b19c0066f64c3d1b0b62753b991cd93 196 SUPERFAMILY SSF53218 3 188 1.31E-47 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_20325 8b19c0066f64c3d1b0b62753b991cd93 196 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CS348_20325 8b19c0066f64c3d1b0b62753b991cd93 196 Pfam PF00994 Probable molybdopterin binding domain 8 147 1.6E-28 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 SUPERFAMILY SSF50692 625 799 5.36E-39 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Gene3D G3DSA:3.40.50.740 41 317 1.7E-73 T 13-10-2018 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 50 69 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 SMART SM00926 45 105 3.3E-10 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 SUPERFAMILY SSF53706 47 682 1.07E-158 T 13-10-2018 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Gene3D G3DSA:3.40.50.740 411 609 2.6E-38 T 13-10-2018 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Gene3D G3DSA:3.40.228.10 328 403 1.8E-19 T 13-10-2018 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Pfam PF01568 Molydopterin dinucleotide binding domain 680 791 2.9E-26 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Pfam PF00384 Molybdopterin oxidoreductase 108 557 2.9E-74 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Gene3D G3DSA:2.40.40.20 654 799 2.7E-40 T 13-10-2018 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 46 105 1.9E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 499 516 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_22145 827e7e5be99d94d6fd6b8c5aa3da4204 799 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 1 799 0.0 T 13-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 CS348_20050 21eede225eda9628b872abfc01940fa1 183 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 13 176 2.7E-62 T 13-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 CS348_20050 21eede225eda9628b872abfc01940fa1 183 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 13 175 1.6E-52 T 13-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 CS348_06370 ccd62f37c75bb729799ca26e1c2b4b11 96 Hamap MF_00460 Protein RnfH [rnfH]. 5 95 25.486 T 13-10-2018 IPR005346 RnfH protein CS348_06370 ccd62f37c75bb729799ca26e1c2b4b11 96 Gene3D G3DSA:3.10.20.280 1 89 9.0E-34 T 13-10-2018 IPR037021 RnfH superfamily CS348_06370 ccd62f37c75bb729799ca26e1c2b4b11 96 Pfam PF03658 RnfH family Ubiquitin 7 87 5.7E-34 T 13-10-2018 IPR005346 RnfH protein CS348_06370 ccd62f37c75bb729799ca26e1c2b4b11 96 SUPERFAMILY SSF54285 4 79 1.61E-26 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 PIRSF PIRSF006334 14 293 2.5E-105 T 13-10-2018 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 284 4.8E-86 T 13-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 Gene3D G3DSA:3.40.140.10 29 179 3.9E-44 T 13-10-2018 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 SUPERFAMILY SSF53927 1 148 2.68E-40 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 292 49.481 T 13-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 Gene3D G3DSA:3.40.140.10 180 294 6.3E-29 T 13-10-2018 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 61 139 6.0E-11 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 SUPERFAMILY SSF53927 152 293 1.84E-43 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CS348_08725 890a6a983a118b6ccfe9ea51f4692eb2 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 276 1.0E-43 T 13-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 Pfam PF00708 Acylphosphatase 8 91 1.4E-27 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 SUPERFAMILY SSF54975 2 93 1.85E-31 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 Gene3D G3DSA:3.30.70.100 1 92 6.5E-36 T 13-10-2018 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 PRINTS PR00112 Acylphosphatase signature 26 51 5.4E-8 T 13-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 PRINTS PR00112 Acylphosphatase signature 61 81 5.4E-8 T 13-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 PRINTS PR00112 Acylphosphatase signature 5 20 5.4E-8 T 13-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 Hamap MF_01450 Acylphosphatase [yccX]. 2 92 31.438 T 13-10-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_15080 3f6accb0f4aeb52f7c774b8c2b510278 93 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_11125 82af5b995fadb56e2c32a3652e111a44 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 70 1.3E-12 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CS348_11125 82af5b995fadb56e2c32a3652e111a44 302 Gene3D G3DSA:1.10.3720.10 100 298 4.5E-16 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11125 82af5b995fadb56e2c32a3652e111a44 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 300 2.6E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_11125 82af5b995fadb56e2c32a3652e111a44 302 SUPERFAMILY SSF161098 100 283 5.49E-23 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Pfam PF02885 Glycosyl transferase family, helical bundle domain 202 262 7.5E-15 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 SUPERFAMILY SSF52317 3 191 2.75E-44 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Gene3D G3DSA:3.40.1030.10 266 520 1.1E-119 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Pfam PF00117 Glutamine amidotransferase class-I 6 186 1.6E-43 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00097 Anthranilate synthase component II signature 124 136 5.2E-33 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00097 Anthranilate synthase component II signature 4 18 5.2E-33 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00097 Anthranilate synthase component II signature 79 90 5.2E-33 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00097 Anthranilate synthase component II signature 52 61 5.2E-33 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00097 Anthranilate synthase component II signature 104 112 5.2E-33 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00097 Anthranilate synthase component II signature 166 179 5.2E-33 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Gene3D G3DSA:3.40.50.880 2 193 1.6E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 204 528 1.1E-128 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 5.4E-5 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 5.4E-5 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 SUPERFAMILY SSF47648 200 266 3.92E-16 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 SUPERFAMILY SSF52418 269 527 9.55E-91 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Pfam PF00591 Glycosyl transferase family, a/b domain 273 521 7.3E-101 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 3.6E-54 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Gene3D G3DSA:1.20.970.10 209 382 1.1E-119 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 1.3E-12 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 1.3E-12 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 1.3E-12 T 13-10-2018 CS348_11235 e4cb12f971bb2e8e82f2afd546bf22ff 531 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 202 530 38.583 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 Gene3D G3DSA:1.10.150.240 22 109 1.7E-66 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 SUPERFAMILY SSF56784 3 239 1.24E-58 T 13-10-2018 IPR036412 HAD-like superfamily CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 240 38.63 T 13-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 209 1.9E-36 T 13-10-2018 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 10 239 1.8E-98 T 13-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 Gene3D G3DSA:3.40.50.1000 10 232 1.7E-66 T 13-10-2018 IPR023214 HAD superfamily CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 94 209 3.9E-14 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 123 136 4.5E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 170 4.5E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 4.5E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 172 192 4.5E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01775 990546a25b395fbc51d0a0e33a9dc9cb 252 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 124 204 1.3E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 SMART SM00448 2 112 2.0E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 Gene3D G3DSA:2.40.50.1020 129 238 1.2E-10 T 13-10-2018 CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 SMART SM00850 143 238 1.3E-26 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 Pfam PF00072 Response regulator receiver domain 4 112 6.8E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 SUPERFAMILY SSF52172 1 123 6.83E-32 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 Gene3D G3DSA:3.40.50.2300 1 127 1.3E-31 T 13-10-2018 CS348_08855 490a8de3a0a5a4f1accc545f469244d4 239 Pfam PF04397 LytTr DNA-binding domain 144 237 2.8E-24 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 SUPERFAMILY SSF55957 357 444 1.27E-21 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 9.1E-20 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 442 3.0E-15 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Gene3D G3DSA:3.40.120.10 3 154 1.1E-48 T 13-10-2018 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 136 1.9E-45 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 47.747 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Gene3D G3DSA:3.40.120.10 257 339 2.3E-63 T 13-10-2018 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 SUPERFAMILY SSF53738 2 181 5.89E-49 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.5E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.5E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.5E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 1.2E-196 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 SUPERFAMILY SSF53738 258 365 2.35E-30 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 SUPERFAMILY SSF53738 156 256 1.06E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 366 1.8E-31 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Gene3D G3DSA:3.40.120.10 174 362 2.3E-63 T 13-10-2018 CS348_02770 18bb309e78602d65c29bd5702ab547f9 445 Gene3D G3DSA:3.30.310.50 370 445 4.1E-25 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Gene3D G3DSA:3.30.190.20 130 239 1.4E-245 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 23.161 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Gene3D G3DSA:1.10.8.280 287 403 1.4E-245 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Gene3D G3DSA:1.20.1580.10 693 830 2.6E-139 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Gene3D G3DSA:3.40.50.300 6 595 1.4E-245 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Gene3D G3DSA:3.40.50.300 613 936 2.6E-139 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 SUPERFAMILY SSF52540 4 569 2.3E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Pfam PF00005 ABC transporter 806 860 1.1E-5 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 Gene3D G3DSA:1.20.1580.10 90 492 1.4E-245 T 13-10-2018 CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 SUPERFAMILY SSF52540 613 911 2.78E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22425 848a77450bc7c74e7d8587677773b0e3 941 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 925 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 CS348_03020 dc1838544aa4c7b50c919fe7f0d71eb4 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.5E-219 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_03020 dc1838544aa4c7b50c919fe7f0d71eb4 454 SUPERFAMILY SSF143548 16 158 1.54E-43 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_03020 dc1838544aa4c7b50c919fe7f0d71eb4 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 6.7E-98 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CS348_03020 dc1838544aa4c7b50c919fe7f0d71eb4 454 Gene3D G3DSA:3.30.1330.90 10 159 2.3E-50 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_03020 dc1838544aa4c7b50c919fe7f0d71eb4 454 Pfam PF03315 Serine dehydratase beta chain 3 155 2.1E-54 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 5.1E-19 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 Gene3D G3DSA:3.40.50.12780 51 515 1.8E-108 T 13-10-2018 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 Pfam PF00501 AMP-binding enzyme 83 522 3.4E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 3.3E-26 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 Gene3D G3DSA:3.30.300.30 518 652 7.5E-35 T 13-10-2018 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.018 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 CS348_22305 5560dc0ad2fe2b3477dbf93d02a2f7fc 652 SUPERFAMILY SSF56801 11 643 3.27E-191 T 13-10-2018 CS348_07430 189c66053ef496da17e07a8019850026 328 Gene3D G3DSA:3.30.1400.10 189 328 5.8E-58 T 13-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 CS348_07430 189c66053ef496da17e07a8019850026 328 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 320 5.4E-108 T 13-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 CS348_07430 189c66053ef496da17e07a8019850026 328 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 194 319 2.3E-48 T 13-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 CS348_07430 189c66053ef496da17e07a8019850026 328 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 322 25.034 T 13-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 CS348_07430 189c66053ef496da17e07a8019850026 328 SMART SM00771 191 320 3.2E-76 T 13-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 CS348_07430 189c66053ef496da17e07a8019850026 328 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 193 328 2.0E-75 T 13-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 CS348_07430 189c66053ef496da17e07a8019850026 328 SUPERFAMILY SSF64383 192 325 1.16E-49 T 13-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 CS348_03730 b14912479ac6f1c8a158b03417b40232 126 SUPERFAMILY SSF54593 1 125 1.34E-24 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_03730 b14912479ac6f1c8a158b03417b40232 126 Gene3D G3DSA:3.10.180.10 7 126 2.4E-42 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_03730 b14912479ac6f1c8a158b03417b40232 126 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 122 1.0E-11 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 SUPERFAMILY SSF54631 290 424 8.29E-27 T 13-10-2018 CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 Gene3D G3DSA:3.30.465.10 435 518 2.7E-21 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 SMART SM01091 439 518 9.2E-25 T 13-10-2018 IPR005170 Transporter-associated domain CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 Gene3D G3DSA:3.10.580.10 283 434 6.1E-41 T 13-10-2018 CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 SUPERFAMILY SSF56176 437 523 1.23E-21 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 Pfam PF03741 Integral membrane protein TerC family 14 203 4.2E-49 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 Pfam PF00571 CBS domain 373 422 4.5E-7 T 13-10-2018 IPR000644 CBS domain CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 Pfam PF00571 CBS domain 302 358 7.0E-4 T 13-10-2018 IPR000644 CBS domain CS348_09060 c1635c617352cd4a34e778c9c1d5ba19 526 Pfam PF03471 Transporter associated domain 440 515 5.9E-19 T 13-10-2018 IPR005170 Transporter-associated domain CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 227 246 7.7E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 15 32 7.7E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 162 185 7.7E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 97 117 7.7E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 201 220 7.7E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 77 94 7.7E-65 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 Gene3D G3DSA:3.40.50.720 1 250 2.7E-70 T 13-10-2018 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.3E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 180 7.4E-4 T 13-10-2018 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 SUPERFAMILY SSF51735 4 248 2.84E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 11 250 1.0E-106 T 13-10-2018 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 CS348_17255 554c464c95fa77b7c33ede2854be73b4 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 248 9.2E-51 T 13-10-2018 CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 Gene3D G3DSA:3.40.50.300 320 565 3.8E-63 T 13-10-2018 CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 Gene3D G3DSA:3.40.50.300 1 234 1.2E-55 T 13-10-2018 CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 SMART SM00382 32 266 3.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 SMART SM00382 354 535 8.8E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 SUPERFAMILY SSF52540 5 226 2.4E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 SUPERFAMILY SSF52540 324 549 3.59E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 Pfam PF00005 ABC transporter 346 489 3.2E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 Pfam PF00005 ABC transporter 26 165 2.0E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16240 689bdf3e540d77d7a7bd1af98928331a 578 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_22675 03218a381ff0d693ea8c8a1b57e17eb0 135 Gene3D G3DSA:3.10.400.10 2 134 9.9E-44 T 13-10-2018 CS348_22675 03218a381ff0d693ea8c8a1b57e17eb0 135 SMART SM01022 15 132 1.8E-40 T 13-10-2018 IPR007374 ASCH domain CS348_22675 03218a381ff0d693ea8c8a1b57e17eb0 135 SUPERFAMILY SSF88697 5 132 1.62E-42 T 13-10-2018 IPR015947 PUA-like superfamily CS348_22675 03218a381ff0d693ea8c8a1b57e17eb0 135 PIRSF PIRSF021320 2 135 2.0E-42 T 13-10-2018 IPR009326 Protein of unknown function DUF984 CS348_22675 03218a381ff0d693ea8c8a1b57e17eb0 135 Pfam PF04266 ASCH domain 23 131 4.9E-22 T 13-10-2018 IPR007374 ASCH domain CS348_08475 e2fcc0139d6cdc453e9ea2df54e5bc16 75 PIRSF PIRSF006188 1 72 2.2E-37 T 13-10-2018 IPR009857 Uncharacterised protein family UPF0352 CS348_08475 e2fcc0139d6cdc453e9ea2df54e5bc16 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 1.0E-20 T 13-10-2018 IPR009857 Uncharacterised protein family UPF0352 CS348_08475 e2fcc0139d6cdc453e9ea2df54e5bc16 75 Gene3D G3DSA:1.10.3390.10 1 75 3.7E-36 T 13-10-2018 IPR023202 YejL-like superfamily CS348_08475 e2fcc0139d6cdc453e9ea2df54e5bc16 75 SUPERFAMILY SSF158651 1 75 3.01E-32 T 13-10-2018 IPR023202 YejL-like superfamily CS348_08475 e2fcc0139d6cdc453e9ea2df54e5bc16 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 24.51 T 13-10-2018 IPR009857 Uncharacterised protein family UPF0352 CS348_08475 e2fcc0139d6cdc453e9ea2df54e5bc16 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 7.2E-25 T 13-10-2018 IPR009857 Uncharacterised protein family UPF0352 CS348_06445 b5b820b0af0f9a3748e77a420eb23dc8 406 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 245 403 6.2E-34 T 13-10-2018 IPR000160 GGDEF domain CS348_06445 b5b820b0af0f9a3748e77a420eb23dc8 406 SUPERFAMILY SSF55073 252 400 9.42E-37 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_06445 b5b820b0af0f9a3748e77a420eb23dc8 406 SMART SM00267 236 406 1.4E-51 T 13-10-2018 IPR000160 GGDEF domain CS348_06445 b5b820b0af0f9a3748e77a420eb23dc8 406 Gene3D G3DSA:3.30.70.270 233 405 6.6E-45 T 13-10-2018 CS348_06445 b5b820b0af0f9a3748e77a420eb23dc8 406 Pfam PF17152 Periplasmic sensor domain 43 144 1.7E-29 T 13-10-2018 IPR033417 Periplasmic sensor domain CHASE8 CS348_06445 b5b820b0af0f9a3748e77a420eb23dc8 406 Pfam PF00990 Diguanylate cyclase, GGDEF domain 247 401 3.5E-42 T 13-10-2018 IPR000160 GGDEF domain CS348_15620 b6aa937b2e6b95e103c6ffa77db2a7ed 352 Gene3D G3DSA:3.55.50.10 91 173 3.5E-103 T 13-10-2018 CS348_15620 b6aa937b2e6b95e103c6ffa77db2a7ed 352 SUPERFAMILY SSF69279 175 338 5.1E-55 T 13-10-2018 CS348_15620 b6aa937b2e6b95e103c6ffa77db2a7ed 352 Gene3D G3DSA:3.30.1920.10 197 271 3.5E-103 T 13-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold CS348_15620 b6aa937b2e6b95e103c6ffa77db2a7ed 352 Gene3D G3DSA:2.30.300.10 7 330 3.5E-103 T 13-10-2018 CS348_15620 b6aa937b2e6b95e103c6ffa77db2a7ed 352 SUPERFAMILY SSF69279 1 173 2.15E-51 T 13-10-2018 CS348_15620 b6aa937b2e6b95e103c6ffa77db2a7ed 352 PIRSF PIRSF004440 1 352 3.0E-101 T 13-10-2018 IPR026276 Baseplate protein GpP CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 Pfam PF01381 Helix-turn-helix 7 58 5.8E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 Pfam PF13521 AAA domain 234 394 3.3E-31 T 13-10-2018 IPR038727 NadR/Ttd14, AAA domain CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 64 395 1.0E-161 T 13-10-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0000309|GO:0009435 KEGG: 00760+2.7.7.1+2.7.1.22 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 Gene3D G3DSA:3.40.50.620 65 230 3.6E-44 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 Gene3D G3DSA:3.40.50.300 231 399 1.6E-56 T 13-10-2018 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 SUPERFAMILY SSF52374 66 229 1.82E-18 T 13-10-2018 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 PIRSF PIRSF004776 2 410 8.2E-219 T 13-10-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 4.3E-19 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 Gene3D G3DSA:1.10.260.40 5 64 1.7E-6 T 13-10-2018 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 SMART SM00530 6 62 3.7E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 SUPERFAMILY SSF52540 232 386 1.15E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20470 19d53626eed9b5c4d8bfd64ff6ed61cf 410 SUPERFAMILY SSF47413 6 60 5.04E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Gene3D G3DSA:3.40.50.20 2 95 7.7E-39 T 13-10-2018 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Gene3D G3DSA:3.30.470.20 191 329 1.8E-61 T 13-10-2018 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 5.1E-84 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Gene3D G3DSA:3.30.1490.20 121 190 4.5E-29 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Gene3D G3DSA:3.90.600.10 330 425 1.0E-33 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 422 7.9E-28 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 425 1.1E-186 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 SMART SM01209 103 296 5.7E-143 T 13-10-2018 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 SUPERFAMILY SSF56059 104 325 2.3E-69 T 13-10-2018 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 1.1E-35 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 SMART SM01210 330 424 4.1E-52 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 44.294 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 SUPERFAMILY SSF52440 1 103 1.73E-37 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_22730 38a7b8af9794505762034fa426ef1eb1 429 SUPERFAMILY SSF51246 329 424 3.53E-31 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 45.043 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 4.0E-112 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 2.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 2.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 2.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 2.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 2.2E-54 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 SUPERFAMILY SSF52096 23 206 7.73E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 Pfam PF00574 Clp protease 26 205 1.8E-89 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 13-10-2018 IPR018215 ClpP, Ser active site CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 Gene3D G3DSA:3.90.226.10 7 207 3.1E-84 T 13-10-2018 CS348_18125 3b4ad355875af0569c2a24f8bcab2271 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 13-10-2018 IPR033135 ClpP, histidine active site CS348_03055 22a75ed2238b095e256328a76b395f07 328 SUPERFAMILY SSF47616 176 324 5.85E-36 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_03055 22a75ed2238b095e256328a76b395f07 328 Gene3D G3DSA:3.40.30.130 1 180 1.6E-79 T 13-10-2018 CS348_03055 22a75ed2238b095e256328a76b395f07 328 Gene3D G3DSA:1.20.1050.10 181 327 4.2E-68 T 13-10-2018 CS348_03055 22a75ed2238b095e256328a76b395f07 328 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 7.0E-22 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_03055 22a75ed2238b095e256328a76b395f07 328 Pfam PF13410 Glutathione S-transferase, C-terminal domain 203 260 1.3E-13 T 13-10-2018 CS348_03055 22a75ed2238b095e256328a76b395f07 328 PIRSF PIRSF015753 5 324 2.9E-133 T 13-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 CS348_03055 22a75ed2238b095e256328a76b395f07 328 SUPERFAMILY SSF52833 41 162 4.31E-15 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 Gene3D G3DSA:1.10.10.10 2 85 3.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 SUPERFAMILY SSF46785 4 85 1.08E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 SUPERFAMILY SSF53850 93 265 1.36E-14 T 13-10-2018 CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 5 279 50.341 T 13-10-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 3.7E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 Pfam PF03466 LysR substrate binding domain 92 264 1.6E-12 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_24325 6b3240efc57c2704d452a68f2f2b3206 282 Gene3D G3DSA:3.40.190.10 86 187 1.7E-6 T 13-10-2018 CS348_23185 0ded807b0a8c2869999d4542adf77f37 254 SUPERFAMILY SSF51366 25 241 8.75E-32 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_23185 0ded807b0a8c2869999d4542adf77f37 254 Pfam PF00834 Ribulose-phosphate 3 epimerase family 24 225 6.9E-28 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_23185 0ded807b0a8c2869999d4542adf77f37 254 Gene3D G3DSA:3.20.20.70 8 241 1.3E-52 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00895 ccea0dc13d613aabced84ada2e60008c 274 Gene3D G3DSA:1.10.530.10 140 268 3.3E-16 T 13-10-2018 CS348_00895 ccea0dc13d613aabced84ada2e60008c 274 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 142 267 2.5E-16 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CS348_00895 ccea0dc13d613aabced84ada2e60008c 274 SMART SM00047 127 256 1.9E-36 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 61.065 T 13-10-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 PIRSF PIRSF000709 2 176 1.6E-9 T 13-10-2018 CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 Gene3D G3DSA:3.40.50.1240 1 212 1.6E-57 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 1.1E-58 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 SMART SM00855 3 157 1.4E-23 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 CS348_20440 a7380a31e52ad8e207ab482f2e68a6bf 215 SUPERFAMILY SSF53254 1 208 2.09E-58 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Pfam PF00009 Elongation factor Tu GTP binding domain 396 552 2.8E-35 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 95 5.1E-16 T 13-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Gene3D G3DSA:3.40.50.10050 685 792 1.6E-36 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 SUPERFAMILY SSF52156 669 798 2.22E-37 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 SUPERFAMILY SSF52540 391 559 7.46E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Gene3D G3DSA:3.30.56.50 2 50 7.7E-26 T 13-10-2018 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Gene3D G3DSA:2.40.30.10 563 681 1.1E-38 T 13-10-2018 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Gene3D G3DSA:2.40.30.10 793 890 4.4E-34 T 13-10-2018 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Pfam PF11987 Translation-initiation factor 2 676 781 2.3E-36 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 395 550 5.7E-34 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 ProSitePatterns PS01176 Initiation factor 2 signature. 842 864 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 889 17.644 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 SUPERFAMILY SSF50447 565 646 7.9E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 SUPERFAMILY SSF46955 3 50 3.11E-11 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 308 891 9.5E-298 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 SUPERFAMILY SSF50447 793 889 4.12E-34 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 316 366 7.2E-15 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 6.3E-7 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal CS348_02810 c431035d0fd51d5c9a0fca54e6a22589 892 Gene3D G3DSA:3.40.50.300 389 562 1.9E-73 T 13-10-2018 CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 SUPERFAMILY SSF48024 25 136 4.18E-39 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 Gene3D G3DSA:1.10.860.10 20 183 3.3E-56 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 SMART SM00382 223 429 2.2E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 27 464 1.0E-174 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 Pfam PF00772 DnaB-like helicase N terminal domain 27 128 2.5E-37 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 Pfam PF03796 DnaB-like helicase C terminal domain 206 462 1.0E-110 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 Gene3D G3DSA:3.40.50.300 184 463 3.0E-104 T 13-10-2018 CS348_22465 0d3de91bcda436544ce162b396e8b5b5 471 SUPERFAMILY SSF52540 204 456 4.39E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 Gene3D G3DSA:3.40.50.720 102 297 4.7E-141 T 13-10-2018 CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 3.1E-53 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 327 2.8E-35 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 SUPERFAMILY SSF51735 102 298 8.55E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 SUPERFAMILY SSF52283 2 135 4.91E-46 T 13-10-2018 CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 Gene3D G3DSA:3.40.50.720 2 317 4.7E-141 T 13-10-2018 CS348_11735 fc39d60f8484b912bfcb187e266dfccc 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 1856 1917 8.4E-8 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 2856 2917 9.1E-5 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 3055 3117 3.36E-6 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1393 1420 0.012 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1793 1814 0.37 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 4557 4582 9.9E-6 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 3289 3322 0.037 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 4363 4396 0.0015 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 2593 2618 0.31 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 2292 2308 0.22 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 5329 5355 0.073 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 3190 3220 0.001 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 3786 3806 0.21 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1194 1222 0.037 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 3387 3409 0.027 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 2394 2419 0.15 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1586 1621 2.6 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 2988 3016 1.0 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 5223 5250 0.11 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 2496 2510 1.6 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1886 1909 4.2 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 4082 4109 0.81 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1488 1511 0.02 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 408 428 0.29 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1692 1711 0.81 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 4653 4677 0.0092 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1288 1309 0.003 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 1992 2018 1.1 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF12245 Bacterial Ig-like domain (group 3) 3491 3518 0.06 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 1258 1317 6.93E-6 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF13750 Bacterial Ig-like domain (group 3) 2081 2214 0.0026 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Pfam PF13750 Bacterial Ig-like domain (group 3) 2682 2813 4.5E-4 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 2656 2719 7.7E-7 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 2456 2517 1.19E-7 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 2055 2116 2.87E-7 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 1457 1519 4.83E-7 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 2255 2318 5.88E-8 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 SUPERFAMILY SSF81296 1657 1719 3.29E-7 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4313 4400 4.8E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3912 4011 5.8E-22 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2226 2321 2.1E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 5160 5259 1.2E-25 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 923 1021 6.5E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2426 2521 9.0E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 5260 5367 2.8E-37 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1523 1627 4.0E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3818 3911 1.1E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1723 1826 1.0E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3026 3120 8.2E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4207 4307 2.1E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4494 4595 1.2E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2322 2425 4.6E-31 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 433 531 9.0E-23 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 532 630 1.4E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3224 3328 1.5E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1427 1522 9.0E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1827 1920 4.5E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 240 336 2.7E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3721 3816 1.3E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1628 1722 1.2E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 726 824 6.7E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2825 2920 8.5E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4683 4783 3.9E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 825 922 1.5E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1229 1322 1.4E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2722 2824 6.7E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2921 3025 2.3E-34 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1022 1123 1.6E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2522 2626 4.4E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3620 3720 1.7E-24 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3329 3423 1.3E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3424 3524 2.5E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4784 4880 2.0E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1921 2025 1.7E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4115 4206 2.0E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2121 2225 1.8E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1323 1426 1.2E-31 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3525 3619 3.0E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4985 5079 2.7E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2627 2721 9.5E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 3121 3223 1.4E-30 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 2026 2120 3.7E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 1124 1228 7.4E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4012 4114 4.5E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4902 4975 5.9E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 5080 5156 3.0E-30 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4602 4673 1.6E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 343 423 1.8E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 4414 4486 1.4E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22385 1749f7815a734e32d71c44d13fa9ebac 5561 Gene3D G3DSA:2.60.40.10 642 717 5.2E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 3 364 1.3E-178 T 13-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 SUPERFAMILY SSF51338 1 365 1.81E-17 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 Gene3D G3DSA:3.20.20.140 51 316 3.4E-120 T 13-10-2018 CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 PIRSF PIRSF039004 1 375 2.1E-130 T 13-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 SUPERFAMILY SSF51556 51 316 1.42E-72 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 Pfam PF01979 Amidohydrolase family 47 334 1.1E-8 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CS348_21380 20a5d4f7fe1a39e2c3f5675142dd22ba 377 Gene3D G3DSA:2.30.40.10 6 362 3.4E-120 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 2.3E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 2.3E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 2.3E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 2.3E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 2.3E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 1.6E-42 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 4.8E-93 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 40.326 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 Gene3D G3DSA:3.30.572.10 1 264 5.0E-137 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 13-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 SUPERFAMILY SSF55831 1 264 4.06E-131 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_04990 f5462ff44f8983c8244cc5d61ac83ace 264 Pfam PF00303 Thymidylate synthase 2 264 9.5E-128 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CS348_21610 4db543077254d72678c2708cfd7ffc0f 282 Gene3D G3DSA:3.90.25.10 137 269 1.8E-92 T 13-10-2018 CS348_21610 4db543077254d72678c2708cfd7ffc0f 282 Pfam PF05368 NmrA-like family 2 220 8.5E-24 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 CS348_21610 4db543077254d72678c2708cfd7ffc0f 282 SUPERFAMILY SSF51735 2 247 9.23E-61 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_21610 4db543077254d72678c2708cfd7ffc0f 282 Gene3D G3DSA:3.40.50.720 3 267 1.8E-92 T 13-10-2018 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 Gene3D G3DSA:3.40.50.12440 44 1245 0.0 T 13-10-2018 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 SUPERFAMILY SSF50692 1082 1235 7.91E-48 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 SUPERFAMILY SSF53706 4 1070 0.0 T 13-10-2018 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 Pfam PF00384 Molybdopterin oxidoreductase 108 833 2.2E-189 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 777 794 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 Gene3D G3DSA:4.10.1200.10 1 28 8.4E-20 T 13-10-2018 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1235 0.0 T 13-10-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 1125 1152 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 1.5E-16 T 13-10-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 SMART SM00926 43 105 1.6E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_11010 a97b816f1fb60d4c790d6da0739568c6 1247 Pfam PF01568 Molydopterin dinucleotide binding domain 1088 1202 9.8E-22 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Gene3D G3DSA:3.30.559.10 7 206 2.0E-44 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 SMART SM00824 Thioesterase 1070 1239 0.0017 T 13-10-2018 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 SUPERFAMILY SSF47336 970 1042 5.76E-12 T 13-10-2018 IPR036736 ACP-like superfamily CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Pfam PF00501 AMP-binding enzyme 462 863 8.2E-97 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Gene3D G3DSA:3.30.300.30 858 965 4.5E-26 T 13-10-2018 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 SUPERFAMILY SSF52777 190 426 1.89E-32 T 13-10-2018 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Pfam PF00975 Thioesterase domain 1068 1284 7.8E-44 T 13-10-2018 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 ProSitePatterns PS00455 Putative AMP-binding domain signature. 600 611 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 SUPERFAMILY SSF56801 421 989 2.88E-147 T 13-10-2018 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Gene3D G3DSA:3.40.50.12780 447 857 6.6E-133 T 13-10-2018 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1001 1016 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 SUPERFAMILY SSF53474 1049 1292 5.13E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 482 887 1.2E-126 T 13-10-2018 IPR010071 Amino acid adenylation domain CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Gene3D G3DSA:3.40.50.1820 966 1294 3.6E-112 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Pfam PF00550 Phosphopantetheine attachment site 980 1041 8.3E-11 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Pfam PF00668 Condensation domain 3 443 8.2E-94 T 13-10-2018 IPR001242 Condensation domain CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 Gene3D G3DSA:3.30.559.30 218 434 4.0E-41 T 13-10-2018 CS348_17305 12424a305b26a51e7df5fa301f780c0a 1294 SUPERFAMILY SSF52777 9 183 1.89E-30 T 13-10-2018 CS348_19405 ccacdbe7f03a4f7b69123909e0d984ff 422 SUPERFAMILY SSF49401 265 422 8.95E-17 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_19405 ccacdbe7f03a4f7b69123909e0d984ff 422 Gene3D G3DSA:2.60.40.1090 259 421 1.5E-18 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_19405 ccacdbe7f03a4f7b69123909e0d984ff 422 Pfam PF00419 Fimbrial protein 261 421 7.9E-12 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_20920 6f8b1a515d21e29a31e147bdf7edd28b 245 SUPERFAMILY SSF52540 64 226 9.27E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20920 6f8b1a515d21e29a31e147bdf7edd28b 245 Pfam PF01695 IstB-like ATP binding protein 93 218 2.2E-17 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CS348_20920 6f8b1a515d21e29a31e147bdf7edd28b 245 SMART SM00382 98 227 1.6E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20920 6f8b1a515d21e29a31e147bdf7edd28b 245 Gene3D G3DSA:3.40.50.300 49 224 3.8E-43 T 13-10-2018 CS348_20920 6f8b1a515d21e29a31e147bdf7edd28b 245 PIRSF PIRSF003073 1 245 2.8E-35 T 13-10-2018 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 Pfam PF00288 GHMP kinases N terminal domain 91 148 2.2E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 Gene3D G3DSA:3.30.70.890 165 283 4.8E-29 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 Gene3D G3DSA:3.30.230.10 2 164 6.8E-58 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 282 2.0E-117 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 SUPERFAMILY SSF54211 1 162 3.04E-50 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 Pfam PF08544 GHMP kinases C terminal 214 263 8.5E-5 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 275 32.138 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 SUPERFAMILY SSF55060 164 280 2.97E-35 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CS348_10930 52dda07b3320f425a8d0936a0b84671d 283 PIRSF PIRSF010376 1 283 3.3E-85 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 Gene3D G3DSA:3.40.640.10 140 358 5.0E-98 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 Pfam PF00155 Aminotransferase class I and II 145 457 7.5E-33 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 SUPERFAMILY SSF53383 91 467 3.44E-91 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 SMART SM00345 7 66 6.4E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 Gene3D G3DSA:1.10.10.10 1 68 5.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 8.9E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 SUPERFAMILY SSF46785 2 70 4.23E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_11985 dc72f48ee28be0a1d3fd7fea3df29fcd 474 Gene3D G3DSA:3.90.1150.10 93 463 5.0E-98 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_14970 9ec197982c11d8a11ec6d627a436f64b 126 Gene3D G3DSA:3.30.429.10 2 126 2.1E-51 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily CS348_14970 9ec197982c11d8a11ec6d627a436f64b 126 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 124 2.3E-26 T 13-10-2018 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 CS348_14970 9ec197982c11d8a11ec6d627a436f64b 126 SUPERFAMILY SSF55331 2 126 3.66E-46 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 Gene3D G3DSA:2.40.30.160 197 318 1.1E-46 T 13-10-2018 CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 321 48.692 T 13-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 SUPERFAMILY SSF103025 14 242 1.3E-64 T 13-10-2018 CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 SUPERFAMILY SSF101790 244 325 8.5E-26 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 187 251 1.9E-26 T 13-10-2018 IPR017703 YgfZ/GcvT conserved site CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 138 1.1E-7 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 PIRSF PIRSF006487 20 285 9.5E-10 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 Gene3D G3DSA:3.30.70.1400 27 113 7.8E-62 T 13-10-2018 CS348_04735 ca59ea3bc2ff61adba39dd8baf47628f 326 Gene3D G3DSA:3.30.70.1630 24 194 7.8E-62 T 13-10-2018 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.088 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.0E-18 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 SUPERFAMILY SSF52540 6 219 2.02E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 1.8E-239 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 9.7E-34 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 SUPERFAMILY SSF50465 298 393 2.76E-36 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 SUPERFAMILY SSF50447 205 301 1.34E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 200 5.6E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.6E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Gene3D G3DSA:2.40.30.10 338 393 1.1E-29 T 13-10-2018 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Gene3D G3DSA:2.40.30.10 206 334 1.4E-53 T 13-10-2018 CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_01970 3a3a20f26d24cb1cdb0d052fa7145dee 394 Gene3D G3DSA:3.40.50.300 1 203 7.4E-70 T 13-10-2018 CS348_10300 8f912186bb8cf1c1dcc22144c4754a40 323 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 12 305 3.5E-108 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_10300 8f912186bb8cf1c1dcc22144c4754a40 323 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 10 314 2.6E-151 T 13-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 CS348_10300 8f912186bb8cf1c1dcc22144c4754a40 323 PIRSF PIRSF026649 9 314 1.5E-103 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_10300 8f912186bb8cf1c1dcc22144c4754a40 323 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 4 310 53.157 T 13-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 SUPERFAMILY SSF88697 10 79 2.34E-17 T 13-10-2018 IPR015947 PUA-like superfamily CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 Gene3D G3DSA:3.40.50.150 190 403 8.9E-72 T 13-10-2018 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 Gene3D G3DSA:2.30.130.10 10 79 6.4E-31 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 190 378 4.2E-29 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 SMART SM00359 10 95 1.6E-14 T 13-10-2018 IPR002478 PUA domain GO:0003723 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 Gene3D G3DSA:3.30.750.80 80 188 2.1E-37 T 13-10-2018 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 8 403 69.44 T 13-10-2018 IPR023542 rRNA large subunit methyltransferase I GO:0008649 CS348_15095 1f6d6e94db39cb31815b59646cce96da 403 SUPERFAMILY SSF53335 86 399 1.92E-72 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_11880 c47bf9fcccad8887e6f680ec58dfa29c 145 PIRSF PIRSF000452 1 145 4.7E-53 T 13-10-2018 IPR024170 Aminoglycoside N6-acetyltransferase CS348_11880 c47bf9fcccad8887e6f680ec58dfa29c 145 SUPERFAMILY SSF55729 1 142 2.36E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_11880 c47bf9fcccad8887e6f680ec58dfa29c 145 Gene3D G3DSA:3.40.630.30 1 145 3.1E-43 T 13-10-2018 CS348_11880 c47bf9fcccad8887e6f680ec58dfa29c 145 Pfam PF00583 Acetyltransferase (GNAT) family 22 132 5.9E-15 T 13-10-2018 IPR000182 GNAT domain CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 212 257 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 Gene3D G3DSA:1.10.10.60 156 208 8.5E-15 T 13-10-2018 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 1.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 1.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 SMART SM00342 175 261 5.0E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 SUPERFAMILY SSF51182 10 103 8.8E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 SUPERFAMILY SSF46689 211 267 8.75E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 SUPERFAMILY SSF46689 159 209 1.93E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 Pfam PF12833 Helix-turn-helix domain 181 262 5.0E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 Pfam PF02311 AraC-like ligand binding domain 18 130 2.7E-8 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 Gene3D G3DSA:1.10.10.60 209 268 1.7E-16 T 13-10-2018 CS348_21480 918d8b8cb0dd404d4801f2d635091936 274 Gene3D G3DSA:2.60.120.10 5 81 9.0E-9 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_05190 0c3459736e7d803110befb028202cc9a 149 Gene3D G3DSA:3.40.50.360 1 149 1.3E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_05190 0c3459736e7d803110befb028202cc9a 149 SUPERFAMILY SSF52218 1 148 2.68E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_05190 0c3459736e7d803110befb028202cc9a 149 PRINTS PR00369 Flavodoxin signature 53 64 5.4E-6 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05190 0c3459736e7d803110befb028202cc9a 149 PRINTS PR00369 Flavodoxin signature 84 94 5.4E-6 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05190 0c3459736e7d803110befb028202cc9a 149 PRINTS PR00369 Flavodoxin signature 108 127 5.4E-6 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05190 0c3459736e7d803110befb028202cc9a 149 Pfam PF00258 Flavodoxin 6 138 8.5E-24 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CS348_16585 9aaa46cd024270fd99d41c3f0002e75c 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 5.6E-25 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 CS348_16585 9aaa46cd024270fd99d41c3f0002e75c 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 1.4E-39 T 13-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 CS348_16585 9aaa46cd024270fd99d41c3f0002e75c 142 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 4 140 28.214 T 13-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 CS348_16585 9aaa46cd024270fd99d41c3f0002e75c 142 Gene3D G3DSA:3.30.420.270 60 133 8.3E-26 T 13-10-2018 CS348_10475 181a15d6c23b2f5baa41245ecc6637c6 204 SUPERFAMILY SSF158442 17 127 5.1E-20 T 13-10-2018 IPR023380 DsbB-like superfamily CS348_10475 181a15d6c23b2f5baa41245ecc6637c6 204 Pfam PF02600 Disulfide bond formation protein DsbB 18 96 4.2E-8 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 CS348_10475 181a15d6c23b2f5baa41245ecc6637c6 204 Gene3D G3DSA:1.20.1550.10 11 103 1.3E-7 T 13-10-2018 IPR023380 DsbB-like superfamily CS348_05970 b74545379856d8c946aca8175968fc31 456 Pfam PF11471 Maltoporin periplasmic N-terminal extension 1 52 2.3E-13 T 13-10-2018 IPR021570 LamB-type porin N-terminal domain CS348_05970 b74545379856d8c946aca8175968fc31 456 Pfam PF16966 Porin-like glycoporin RafY 92 456 2.1E-193 T 13-10-2018 IPR016963 Glycoporin RafY CS348_05970 b74545379856d8c946aca8175968fc31 456 SUPERFAMILY SSF56935 88 454 4.39E-6 T 13-10-2018 CS348_05970 b74545379856d8c946aca8175968fc31 456 PIRSF PIRSF030989 1 456 2.2E-264 T 13-10-2018 IPR016963 Glycoporin RafY CS348_00525 10cb4c12f31823295770d4430385d1a2 294 SMART SM00849 61 246 3.6E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_00525 10cb4c12f31823295770d4430385d1a2 294 Gene3D G3DSA:3.60.15.10 33 291 3.9E-72 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_00525 10cb4c12f31823295770d4430385d1a2 294 Pfam PF00753 Metallo-beta-lactamase superfamily 63 241 1.4E-18 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_00525 10cb4c12f31823295770d4430385d1a2 294 SUPERFAMILY SSF56281 39 257 5.9E-39 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 Gene3D G3DSA:3.40.50.970 414 615 6.5E-47 T 13-10-2018 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 SUPERFAMILY SSF52467 185 373 4.58E-43 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 644 3.9E-286 T 13-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 SUPERFAMILY SSF52518 1 208 1.04E-31 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 Gene3D G3DSA:3.40.50.970 1 205 1.3E-32 T 13-10-2018 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 SUPERFAMILY SSF52518 419 630 3.32E-55 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 220 353 1.3E-32 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 196 4.2E-33 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 442 601 9.5E-42 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 478 497 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CS348_21445 3e70a7f6ac8bc3f90b28d28cc9a8352c 646 Gene3D G3DSA:3.40.50.1220 217 396 1.6E-37 T 13-10-2018 CS348_14285 5d516c8ae42d1669bfb86345028c5af1 287 SUPERFAMILY SSF161098 6 274 1.07E-52 T 13-10-2018 IPR035906 MetI-like superfamily CS348_14285 5d516c8ae42d1669bfb86345028c5af1 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 283 3.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_14285 5d516c8ae42d1669bfb86345028c5af1 287 Gene3D G3DSA:1.10.3720.10 6 281 6.7E-52 T 13-10-2018 IPR035906 MetI-like superfamily CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 5.4E-58 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 5.4E-58 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 5.4E-58 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 5.4E-58 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 5.4E-58 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 5.4E-58 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 SUPERFAMILY SSF50494 19 276 6.48E-62 T 13-10-2018 IPR009003 Peptidase S1, PA clan CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 376 443 9.8E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 Pfam PF13180 PDZ domain 278 358 2.8E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 SUPERFAMILY SSF50156 386 452 2.76E-15 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 SUPERFAMILY SSF50156 249 358 1.17E-21 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 Pfam PF13365 Trypsin-like peptidase domain 92 228 3.9E-29 T 13-10-2018 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 Gene3D G3DSA:2.30.42.10 369 455 2.0E-23 T 13-10-2018 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 453 1.4E-160 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 Gene3D G3DSA:2.40.10.120 39 261 1.3E-83 T 13-10-2018 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 Gene3D G3DSA:2.30.42.10 265 368 5.5E-29 T 13-10-2018 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 SMART SM00228 267 349 1.9E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_02485 74f2e3c8958a4c92e3d988547b65afb3 455 SMART SM00228 374 447 1.7E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 Pfam PF07715 TonB-dependent Receptor Plug Domain 41 146 7.1E-31 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 2 614 35.233 T 13-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 SUPERFAMILY SSF56935 26 614 7.94E-128 T 13-10-2018 CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 2 614 5.4E-294 T 13-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 Gene3D G3DSA:2.170.130.10 20 151 4.8E-39 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 Gene3D G3DSA:2.40.170.20 152 614 3.7E-181 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 33 - T 13-10-2018 IPR010916 TonB box, conserved site CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 597 614 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site CS348_22960 7b2d2d0884aed3c50356a4534600e093 614 Pfam PF00593 TonB dependent receptor 219 613 2.6E-48 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_00355 c776a5205eaa7da0757564f57a89afca 285 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 20 285 1.4E-86 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 CS348_05160 85366452a3ad824cc49a411f67c12813 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 452 1.2E-55 T 13-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 CS348_05160 85366452a3ad824cc49a411f67c12813 454 Pfam PF03641 Possible lysine decarboxylase 190 329 7.2E-34 T 13-10-2018 IPR031100 LOG family CS348_05160 85366452a3ad824cc49a411f67c12813 454 SUPERFAMILY SSF102405 119 330 1.53E-42 T 13-10-2018 CS348_05160 85366452a3ad824cc49a411f67c12813 454 Gene3D G3DSA:3.40.50.450 124 452 4.5E-122 T 13-10-2018 CS348_05160 85366452a3ad824cc49a411f67c12813 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 1.3E-46 T 13-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 CS348_05160 85366452a3ad824cc49a411f67c12813 454 Gene3D G3DSA:3.30.1850.10 1 120 2.2E-52 T 13-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 Hamap MF_01201 Alanine racemase. 2 356 33.194 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 SUPERFAMILY SSF51419 9 233 4.25E-64 T 13-10-2018 IPR029066 PLP-binding barrel CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 Gene3D G3DSA:3.20.20.10 11 215 8.9E-114 T 13-10-2018 IPR029066 PLP-binding barrel CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 TIGRFAM TIGR00492 alr: alanine racemase 4 354 1.1E-130 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 Pfam PF00842 Alanine racemase, C-terminal domain 232 353 8.6E-40 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 Gene3D G3DSA:2.40.37.10 216 351 8.9E-114 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 SUPERFAMILY SSF50621 226 354 5.23E-44 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 SMART SM01005 232 356 1.3E-61 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 Pfam PF01168 Alanine racemase, N-terminal domain 10 217 1.1E-65 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 61 79 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 190 217 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 338 351 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 27 43 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 121 133 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 286 303 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 265 280 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 155 166 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_10810 462a88e38d99be2b7b287eef6df66b2d 356 PRINTS PR00992 Alanine racemase signature 248 263 4.7E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_04965 64a4895381842e61ac07a430ed502616 237 Pfam PF03741 Integral membrane protein TerC family 17 203 9.7E-53 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CS348_11175 e6df3b1a38536722a0fa2b5476497a38 179 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.39 T 13-10-2018 IPR006008 Intracellular septation protein A GO:0016021 CS348_11175 e6df3b1a38536722a0fa2b5476497a38 179 Pfam PF04279 Intracellular septation protein A 1 175 3.7E-72 T 13-10-2018 IPR006008 Intracellular septation protein A GO:0016021 CS348_11175 e6df3b1a38536722a0fa2b5476497a38 179 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 2.4E-74 T 13-10-2018 IPR006008 Intracellular septation protein A GO:0016021 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82866 842 1038 2.62E-44 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:3.30.70.1430 40 828 0.0 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:1.20.1640.10 10 523 0.0 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:3.30.2090.10 732 820 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82714 733 817 4.71E-21 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Pfam PF00873 AcrB/AcrD/AcrF family 4 1038 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:1.20.1640.10 524 1034 0.0 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 632 646 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 563 580 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 9.8E-90 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82714 185 274 4.71E-19 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:3.30.70.1320 135 334 0.0 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82693 683 868 5.06E-26 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82693 40 134 3.66E-26 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 4 1049 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:3.30.70.1440 680 877 0.0 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82866 298 499 1.27E-50 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:3.30.2090.10 181 277 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82693 576 682 4.18E-27 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 Gene3D G3DSA:3.30.70.1430 578 679 0.0 T 13-10-2018 CS348_18620 16f198476a2a8cf5c2be1736df292d4e 1055 SUPERFAMILY SSF82693 137 332 2.04E-25 T 13-10-2018 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 SUPERFAMILY SSF52540 37 581 1.09E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 SUPERFAMILY SSF52540 3 415 1.16E-138 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Pfam PF02151 UvrB/uvrC motif 634 667 7.8E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Pfam PF12344 Ultra-violet resistance protein B 552 593 1.2E-21 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Pfam PF00271 Helicase conserved C-terminal domain 436 544 2.4E-17 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 SMART SM00490 460 546 3.8E-20 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 666 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 SMART SM00487 9 425 5.2E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Gene3D G3DSA:3.40.50.300 272 414 2.1E-52 T 13-10-2018 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 SUPERFAMILY SSF46600 626 669 5.1E-12 T 13-10-2018 IPR036876 UVR domain superfamily CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Pfam PF04851 Type III restriction enzyme, res subunit 13 92 5.4E-9 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 668 44.368 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Gene3D G3DSA:4.10.860.10 616 673 4.9E-29 T 13-10-2018 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Gene3D G3DSA:3.40.50.300 1 244 4.0E-76 T 13-10-2018 CS348_16340 d5063a79ee0911903ffe2a5aa07e2c1b 673 Gene3D G3DSA:3.40.50.300 415 590 3.4E-50 T 13-10-2018 CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 197 213 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 1.2E-20 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 3.5E-92 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 SUPERFAMILY SSF56219 1 267 2.49E-86 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 Gene3D G3DSA:3.60.10.10 1 268 5.0E-85 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_13820 cf00dd3acd5df59fa1bf4d1e1919970e 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 2.8E-108 T 13-10-2018 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 Gene3D G3DSA:3.20.20.70 1 462 2.4E-168 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 Pfam PF02436 Conserved carboxylase domain 290 489 7.7E-54 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 SUPERFAMILY SSF51230 516 590 3.4E-21 T 13-10-2018 IPR011053 Single hybrid motif CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 Pfam PF00364 Biotin-requiring enzyme 527 590 3.9E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 5 587 1.7E-300 T 13-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 Pfam PF00682 HMGL-like 3 268 2.1E-70 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 547 564 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 Gene3D G3DSA:2.40.50.100 515 591 1.5E-24 T 13-10-2018 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 SUPERFAMILY SSF51569 3 298 3.66E-89 T 13-10-2018 CS348_02465 eca5a473c22a7f0936027c5c57ae9a8d 591 SUPERFAMILY SSF89000 295 455 4.71E-46 T 13-10-2018 CS348_14565 445e82ef77f2a686f8d922f90bc3d12f 232 Pfam PF03963 Flagellar hook capping protein - N-terminal region 12 79 2.5E-22 T 13-10-2018 IPR005648 Flagellar hook capping protein CS348_14565 445e82ef77f2a686f8d922f90bc3d12f 232 Gene3D G3DSA:2.30.30.910 89 226 4.3E-35 T 13-10-2018 CS348_14565 445e82ef77f2a686f8d922f90bc3d12f 232 Pfam PF13860 FlgD Ig-like domain 119 190 6.2E-24 T 13-10-2018 IPR025965 FlgD Ig-like domain CS348_14565 445e82ef77f2a686f8d922f90bc3d12f 232 Gene3D G3DSA:2.60.40.4070 105 198 4.3E-35 T 13-10-2018 CS348_14565 445e82ef77f2a686f8d922f90bc3d12f 232 Pfam PF13861 FlgD Tudor-like domain 88 229 1.2E-15 T 13-10-2018 IPR025963 FlgD Tudor-like domain CS348_07880 133cd7021de9768b03a8a4c268911733 235 Gene3D G3DSA:1.10.3720.10 8 230 3.1E-43 T 13-10-2018 IPR035906 MetI-like superfamily CS348_07880 133cd7021de9768b03a8a4c268911733 235 SUPERFAMILY SSF161098 17 224 1.01E-36 T 13-10-2018 IPR035906 MetI-like superfamily CS348_07880 133cd7021de9768b03a8a4c268911733 235 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 227 1.1E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_07880 133cd7021de9768b03a8a4c268911733 235 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 2.5E-13 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 Gene3D G3DSA:3.40.50.970 6 192 2.4E-68 T 13-10-2018 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 201 334 5.8E-45 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 SUPERFAMILY SSF52467 165 361 3.96E-57 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 Gene3D G3DSA:3.40.50.970 367 561 2.9E-64 T 13-10-2018 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 SUPERFAMILY SSF52518 366 560 2.95E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 14 561 2.2E-199 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 427 446 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 181 1.9E-57 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 SUPERFAMILY SSF52518 10 193 4.76E-60 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 538 3.1E-46 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_00215 6b0df08f03957f0baea7c0520d9bd285 562 Gene3D G3DSA:3.40.50.1220 193 366 1.0E-60 T 13-10-2018 CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 SUPERFAMILY SSF50891 1 162 4.97E-60 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 Gene3D G3DSA:2.40.100.10 1 164 5.4E-73 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 PIRSF PIRSF001467 1 164 1.1E-28 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 1.0E-11 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 1.0E-11 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 1.0E-11 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_17765 d7303ec8af23ee6c56bf6dc961c8e6db 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 161 4.0E-48 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 SUPERFAMILY SSF46785 6 88 9.84E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 SUPERFAMILY SSF53850 88 290 1.56E-28 T 13-10-2018 CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 Gene3D G3DSA:3.40.190.10 168 264 1.2E-14 T 13-10-2018 CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 Gene3D G3DSA:3.40.190.10 131 286 1.2E-14 T 13-10-2018 CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 9.4E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 Pfam PF03466 LysR substrate binding domain 88 290 1.5E-26 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_12930 e944d1a97b724a658597f0b0dfcddb08 310 Gene3D G3DSA:1.10.10.10 3 89 4.6E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06495 71be5581139393d4b60d2acd025f8256 857 Gene3D G3DSA:3.40.50.300 550 764 1.3E-89 T 13-10-2018 CS348_06495 71be5581139393d4b60d2acd025f8256 857 SUPERFAMILY SSF81923 4 156 1.31E-42 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CS348_06495 71be5581139393d4b60d2acd025f8256 857 SMART SM00382 597 738 5.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06495 71be5581139393d4b60d2acd025f8256 857 SMART SM00382 198 343 5.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06495 71be5581139393d4b60d2acd025f8256 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 CS348_06495 71be5581139393d4b60d2acd025f8256 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 3.8E-14 T 13-10-2018 IPR004176 Clp, N-terminal CS348_06495 71be5581139393d4b60d2acd025f8256 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.2E-11 T 13-10-2018 IPR004176 Clp, N-terminal CS348_06495 71be5581139393d4b60d2acd025f8256 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 337 1.3E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 Gene3D G3DSA:3.40.50.300 348 544 3.0E-69 T 13-10-2018 CS348_06495 71be5581139393d4b60d2acd025f8256 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 CS348_06495 71be5581139393d4b60d2acd025f8256 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 2.0E-55 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 SUPERFAMILY SSF52540 159 545 1.85E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06495 71be5581139393d4b60d2acd025f8256 857 Gene3D G3DSA:1.10.8.60 766 857 2.7E-27 T 13-10-2018 CS348_06495 71be5581139393d4b60d2acd025f8256 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_06495 71be5581139393d4b60d2acd025f8256 857 SUPERFAMILY SSF52540 546 853 1.04E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06495 71be5581139393d4b60d2acd025f8256 857 SMART SM01086 766 855 2.8E-37 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_06495 71be5581139393d4b60d2acd025f8256 857 Gene3D G3DSA:3.40.50.300 158 347 1.1E-74 T 13-10-2018 CS348_06495 71be5581139393d4b60d2acd025f8256 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 2.5E-28 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_06495 71be5581139393d4b60d2acd025f8256 857 Gene3D G3DSA:1.10.1780.10 1 148 1.6E-34 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Gene3D G3DSA:1.20.1480.50 165 256 1.4E-7 T 13-10-2018 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 519 6.1E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_05220 d683a90b45bb374f6ce814210913995a 918 SUPERFAMILY SSF52172 668 786 9.25E-35 T 13-10-2018 IPR011006 CheY-like superfamily CS348_05220 d683a90b45bb374f6ce814210913995a 918 SMART SM00388 292 357 1.2E-25 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_05220 d683a90b45bb374f6ce814210913995a 918 SMART SM00387 404 520 9.9E-38 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_05220 d683a90b45bb374f6ce814210913995a 918 Pfam PF00512 His Kinase A (phospho-acceptor) domain 293 357 3.4E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_05220 d683a90b45bb374f6ce814210913995a 918 SUPERFAMILY SSF158472 200 249 7.45E-5 T 13-10-2018 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Gene3D G3DSA:3.40.50.2300 660 788 1.2E-36 T 13-10-2018 CS348_05220 d683a90b45bb374f6ce814210913995a 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 498 9.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_05220 d683a90b45bb374f6ce814210913995a 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 517 9.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_05220 d683a90b45bb374f6ce814210913995a 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 459 9.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_05220 d683a90b45bb374f6ce814210913995a 918 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 473 9.9E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 177 1.2E-55 T 13-10-2018 IPR019247 Histidine kinase BarA, N-terminal CS348_05220 d683a90b45bb374f6ce814210913995a 918 Gene3D G3DSA:1.10.287.130 257 355 1.7E-29 T 13-10-2018 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Pfam PF00072 Response regulator receiver domain 670 780 5.3E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Pfam PF01627 Hpt domain 828 908 4.7E-13 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Gene3D G3DSA:1.20.120.160 805 918 5.2E-35 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_05220 d683a90b45bb374f6ce814210913995a 918 SUPERFAMILY SSF47226 764 909 4.58E-23 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_05220 d683a90b45bb374f6ce814210913995a 918 SUPERFAMILY SSF55874 346 516 5.37E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_05220 d683a90b45bb374f6ce814210913995a 918 SMART SM00073 819 914 5.3E-22 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_05220 d683a90b45bb374f6ce814210913995a 918 SMART SM00304 200 252 1.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_05220 d683a90b45bb374f6ce814210913995a 918 Gene3D G3DSA:3.30.565.10 356 522 3.3E-51 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_05220 d683a90b45bb374f6ce814210913995a 918 SMART SM00448 668 781 1.5E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_05220 d683a90b45bb374f6ce814210913995a 918 SUPERFAMILY SSF47384 277 358 1.35E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 ProSitePatterns PS00516 Alkylbase DNA glycosidases alkA family signature. 214 238 - T 13-10-2018 IPR000035 Alkylbase DNA glycosidase, conserved site GO:0003905|GO:0006281 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 SMART SM01009 1 112 5.9E-54 T 13-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 Pfam PF06029 AlkA N-terminal domain 2 112 3.1E-32 T 13-10-2018 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 SUPERFAMILY SSF48150 101 274 5.41E-45 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 118 241 1.5E-8 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 SMART SM00478 130 276 2.2E-23 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 Gene3D G3DSA:3.30.310.20 1 112 7.8E-39 T 13-10-2018 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 Gene3D G3DSA:1.10.1670.10 231 282 1.0E-27 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 Gene3D G3DSA:1.10.340.30 113 230 7.2E-32 T 13-10-2018 CS348_09035 c57c9a7fd6ae2d0f388227471ee9d430 289 SUPERFAMILY SSF55945 1 97 1.41E-30 T 13-10-2018 CS348_02725 5f52ccdba8af783af840cadc82f72f34 321 Pfam PF00892 EamA-like transporter family 159 291 3.3E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_02725 5f52ccdba8af783af840cadc82f72f34 321 Pfam PF00892 EamA-like transporter family 7 142 9.2E-28 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_02725 5f52ccdba8af783af840cadc82f72f34 321 SUPERFAMILY SSF103481 42 143 9.29E-13 T 13-10-2018 CS348_00550 18b5b556bf7f5928d3ce2755e86b52a7 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.97 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_00550 18b5b556bf7f5928d3ce2755e86b52a7 213 Gene3D G3DSA:3.40.50.2020 1 213 2.6E-80 T 13-10-2018 CS348_00550 18b5b556bf7f5928d3ce2755e86b52a7 213 Pfam PF00156 Phosphoribosyl transferase domain 48 159 4.5E-12 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CS348_00550 18b5b556bf7f5928d3ce2755e86b52a7 213 SUPERFAMILY SSF53271 2 208 2.29E-50 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_00550 18b5b556bf7f5928d3ce2755e86b52a7 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 6.0E-71 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 SUPERFAMILY SSF103515 686 978 1.03E-53 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 577 978 2.2E-84 T 13-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 Gene3D G3DSA:2.40.128.130 669 977 2.8E-57 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 PRINTS PR01484 Pertactin virulence factor family signature 757 781 5.6E-8 T 13-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 PRINTS PR01484 Pertactin virulence factor family signature 867 890 5.6E-8 T 13-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 PRINTS PR01484 Pertactin virulence factor family signature 717 737 5.6E-8 T 13-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 PRINTS PR01484 Pertactin virulence factor family signature 933 958 5.6E-8 T 13-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 PRINTS PR01484 Pertactin virulence factor family signature 958 978 5.6E-8 T 13-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 SMART SM00869 717 967 9.9E-42 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 SUPERFAMILY SSF51126 197 679 1.38E-39 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_18510 395c1e2ef94977d185e9a4d42a2995a6 978 Pfam PF03797 Autotransporter beta-domain 720 957 3.0E-43 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_16000 b57b16fbe946c05cf83c209894f35d59 252 SMART SM00420 8 57 5.1E-11 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_16000 b57b16fbe946c05cf83c209894f35d59 252 SMART SM01134 73 234 1.2E-55 T 13-10-2018 CS348_16000 b57b16fbe946c05cf83c209894f35d59 252 Pfam PF00455 DeoR C terminal sensor domain 76 233 5.1E-44 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_16000 b57b16fbe946c05cf83c209894f35d59 252 SUPERFAMILY SSF100950 74 235 7.64E-30 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_16000 b57b16fbe946c05cf83c209894f35d59 252 Pfam PF08220 DeoR-like helix-turn-helix domain 8 58 6.9E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_16000 b57b16fbe946c05cf83c209894f35d59 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_11390 166ca14301e95e6c2b0bfd5b8b5e0c5a 377 Gene3D G3DSA:1.20.1290.10 76 185 7.4E-6 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CS348_11390 166ca14301e95e6c2b0bfd5b8b5e0c5a 377 SUPERFAMILY SSF69118 78 182 1.13E-11 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CS348_11390 166ca14301e95e6c2b0bfd5b8b5e0c5a 377 Gene3D G3DSA:1.20.1290.10 235 376 8.5E-10 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CS348_11390 166ca14301e95e6c2b0bfd5b8b5e0c5a 377 SUPERFAMILY SSF69118 215 375 7.44E-14 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CS348_06110 426e67061df6ca05fb90771d6eeb20de 149 SUPERFAMILY SSF54106 97 147 1.16E-7 T 13-10-2018 CS348_06110 426e67061df6ca05fb90771d6eeb20de 149 SMART SM00749 28 91 1.8E-9 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria CS348_06110 426e67061df6ca05fb90771d6eeb20de 149 Gene3D G3DSA:3.10.350.10 98 146 3.6E-14 T 13-10-2018 IPR036779 LysM domain superfamily CS348_06110 426e67061df6ca05fb90771d6eeb20de 149 SMART SM00257 98 147 2.7E-13 T 13-10-2018 IPR018392 LysM domain CS348_06110 426e67061df6ca05fb90771d6eeb20de 149 Pfam PF04972 BON domain 24 89 2.9E-10 T 13-10-2018 IPR007055 BON domain CS348_06110 426e67061df6ca05fb90771d6eeb20de 149 Pfam PF01476 LysM domain 99 147 5.9E-14 T 13-10-2018 IPR018392 LysM domain CS348_04765 2f0f8239f075896d3576580db8827cd6 237 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_04765 2f0f8239f075896d3576580db8827cd6 237 Pfam PF13098 Thioredoxin-like domain 105 227 1.0E-28 T 13-10-2018 IPR012336 Thioredoxin-like fold CS348_04765 2f0f8239f075896d3576580db8827cd6 237 SUPERFAMILY SSF54423 23 81 1.28E-17 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CS348_04765 2f0f8239f075896d3576580db8827cd6 237 Gene3D G3DSA:3.10.450.70 22 70 7.8E-25 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CS348_04765 2f0f8239f075896d3576580db8827cd6 237 Gene3D G3DSA:3.40.30.10 71 231 6.7E-52 T 13-10-2018 CS348_04765 2f0f8239f075896d3576580db8827cd6 237 SUPERFAMILY SSF52833 85 233 2.08E-43 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_04765 2f0f8239f075896d3576580db8827cd6 237 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 76 4.7E-14 T 13-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 15 197 5.4E-49 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 Gene3D G3DSA:3.40.50.620 3 227 2.4E-69 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 Pfam PF09179 TilS substrate binding domain 242 309 5.9E-19 T 13-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 6 301 22.532 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 Gene3D G3DSA:1.20.59.20 228 313 2.3E-34 T 13-10-2018 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 SUPERFAMILY SSF52402 4 227 3.97E-63 T 13-10-2018 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 357 402 8.4E-16 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 Pfam PF11734 TilS substrate C-terminal domain 357 428 4.2E-27 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 Pfam PF01171 PP-loop family 16 192 7.6E-56 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 SMART SM00977 357 428 1.5E-25 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 SUPERFAMILY SSF82829 228 313 6.54E-28 T 13-10-2018 CS348_19115 c1c213595b33c3acacd64acc5f4c1185 430 SUPERFAMILY SSF56037 318 428 7.06E-32 T 13-10-2018 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Gene3D G3DSA:3.30.450.40 4 170 1.0E-15 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Pfam PF01590 GAF domain 23 154 4.6E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Gene3D G3DSA:1.10.8.60 358 423 1.7E-19 T 13-10-2018 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 SMART SM00382 207 350 5.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 400 409 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Gene3D G3DSA:1.10.10.60 451 505 1.5E-10 T 13-10-2018 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 SMART SM00065 20 167 3.7E-18 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 SUPERFAMILY SSF55781 22 170 1.29E-16 T 13-10-2018 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 211 224 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 SUPERFAMILY SSF52540 187 422 6.74E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 273 288 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Gene3D G3DSA:3.40.50.300 179 357 1.3E-62 T 13-10-2018 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Hamap MF_01314 Anaerobic nitric oxide reductase transcription regulator NorR [norR]. 1 505 62.502 T 13-10-2018 IPR023944 Anaerobic nitric oxide reductase transcription regulator GO:0003700|GO:0006355 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 SUPERFAMILY SSF46689 454 504 6.27E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05840 267cf36149b54c2fe8bd34f7ce31efdf 506 Pfam PF00158 Sigma-54 interaction domain 187 353 1.6E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_22540 cbfe374453fe3294b54a8f71a5dbd53a 452 Pfam PF02264 LamB porin 28 452 3.2E-148 T 13-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 CS348_22540 cbfe374453fe3294b54a8f71a5dbd53a 452 Gene3D G3DSA:2.40.170.10 26 452 2.8E-200 T 13-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 CS348_22540 cbfe374453fe3294b54a8f71a5dbd53a 452 Hamap MF_01301 Maltoporin [lamB]. 4 452 43.769 T 13-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 CS348_22540 cbfe374453fe3294b54a8f71a5dbd53a 452 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 32 448 0.0 T 13-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 CS348_22540 cbfe374453fe3294b54a8f71a5dbd53a 452 SUPERFAMILY SSF56935 26 452 4.58E-156 T 13-10-2018 CS348_18455 8380b114e197024f4711dfd691f09482 88 Hamap MF_01198 Anti-adapter protein IraP [iraP]. 3 88 29.96 T 13-10-2018 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 CS348_18455 8380b114e197024f4711dfd691f09482 88 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 3 87 2.2E-30 T 13-10-2018 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 CS348_00870 181cdece30742a084cca1cb81c89f892 332 SUPERFAMILY SSF89733 1 332 5.76E-92 T 13-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 CS348_00870 181cdece30742a084cca1cb81c89f892 332 Gene3D G3DSA:1.10.1530.10 5 64 4.6E-115 T 13-10-2018 CS348_00870 181cdece30742a084cca1cb81c89f892 332 Gene3D G3DSA:3.30.1370.60 65 270 4.6E-115 T 13-10-2018 CS348_00870 181cdece30742a084cca1cb81c89f892 332 Gene3D G3DSA:3.30.60.50 165 220 4.6E-115 T 13-10-2018 CS348_00870 181cdece30742a084cca1cb81c89f892 332 Pfam PF02615 Malate/L-lactate dehydrogenase 3 330 5.9E-100 T 13-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 CS348_00870 181cdece30742a084cca1cb81c89f892 332 Hamap MF_00820 2,3-diketo-L-gulonate reductase [dlgD]. 1 332 82.957 T 13-10-2018 IPR023689 2,3-diketo-L-gulonate reductase GO:0016616|GO:0047559|GO:0055114|GO:0070403 KEGG: 00040+1.1.1.130|KEGG: 00053+1.1.1.130|MetaCyc: PWY-6961 CS348_16940 212ac0ce4f4bbff581c9d8e4f254dc3c 246 SUPERFAMILY SSF161098 24 223 8.5E-38 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16940 212ac0ce4f4bbff581c9d8e4f254dc3c 246 Gene3D G3DSA:1.10.3720.10 18 239 2.3E-44 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16940 212ac0ce4f4bbff581c9d8e4f254dc3c 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 238 2.0E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16940 212ac0ce4f4bbff581c9d8e4f254dc3c 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 23 132 2.8E-15 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Gene3D G3DSA:2.160.10.10 100 309 2.5E-68 T 13-10-2018 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 259 285 0.23 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19165 7fae6da925249332fca22c5d97b4b992 341 SUPERFAMILY SSF51161 32 316 7.15E-87 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 2.8E-21 T 13-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 4.5E-130 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Gene3D G3DSA:3.40.1390.10 1 99 4.2E-38 T 13-10-2018 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.697 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 2.1E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 3.6E-7 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19165 7fae6da925249332fca22c5d97b4b992 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 9.2E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_24475 1dd01ab01564a98829e9f130180ca332 460 SMART SM00382 142 327 4.5E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24475 1dd01ab01564a98829e9f130180ca332 460 Gene3D G3DSA:3.40.50.300 76 344 1.2E-114 T 13-10-2018 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 57.088 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 SUPERFAMILY SSF47917 345 459 1.62E-55 T 13-10-2018 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 Gene3D G3DSA:1.10.1140.10 345 460 7.8E-61 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 4.1E-64 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 1.8E-264 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 SUPERFAMILY SSF50615 1 75 1.62E-24 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 Gene3D G3DSA:2.40.10.170 2 75 2.2E-31 T 13-10-2018 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 1.7E-20 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24475 1dd01ab01564a98829e9f130180ca332 460 SUPERFAMILY SSF52540 77 348 1.44E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 Gene3D G3DSA:1.10.287.990 20 90 3.5E-33 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 SUPERFAMILY SSF46609 1 90 4.32E-37 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.7E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 2.7E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.7E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 2.7E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 PRINTS PR01703 Manganese superoxide dismutase signature 166 178 2.7E-27 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 201 6.7E-41 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 168 175 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 PIRSF PIRSF000349 1 206 4.4E-81 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 Gene3D G3DSA:2.40.500.20 91 206 3.5E-51 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 1.6E-33 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_23510 c0d0a291e51ec3e28882ef6575f7ee99 206 SUPERFAMILY SSF54719 95 204 1.44E-45 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CS348_13485 0f8c9dcde0362afbbd12553f6396e5b8 351 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 56 334 3.2E-59 T 13-10-2018 IPR006430 Phage portal protein PBSX family CS348_13485 0f8c9dcde0362afbbd12553f6396e5b8 351 Pfam PF04860 Phage portal protein 99 347 7.5E-17 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein CS348_13485 0f8c9dcde0362afbbd12553f6396e5b8 351 PIRSF PIRSF018494 1 350 1.9E-137 T 13-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 SUPERFAMILY SSF54197 4 177 2.21E-71 T 13-10-2018 IPR036265 HIT-like superfamily CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 Gene3D G3DSA:3.30.428.10 176 348 4.8E-71 T 13-10-2018 IPR036265 HIT-like superfamily CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 13-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 345 4.0E-71 T 13-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 Gene3D G3DSA:3.30.428.10 44 175 2.6E-57 T 13-10-2018 IPR036265 HIT-like superfamily CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 SUPERFAMILY SSF54197 179 345 1.86E-58 T 13-10-2018 IPR036265 HIT-like superfamily CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 4 176 1.1E-69 T 13-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 PIRSF PIRSF000808 1 341 4.9E-127 T 13-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 CS348_16465 7fb10baa28cffce0a4dec15616fa70fb 348 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 347 3.3E-209 T 13-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 CS348_16590 a8f9889605ce5bc6eeae12263492a91c 230 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 4 224 43.558 T 13-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 CS348_16590 a8f9889605ce5bc6eeae12263492a91c 230 Pfam PF01618 MotA/TolQ/ExbB proton channel family 78 207 7.7E-42 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CS348_16590 a8f9889605ce5bc6eeae12263492a91c 230 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 1.6E-93 T 13-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 204 4.7E-70 T 13-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 SUPERFAMILY SSF51735 2 112 2.36E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Gene3D G3DSA:3.30.160.110 113 148 5.7E-20 T 13-10-2018 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 50.986 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 SUPERFAMILY SSF75615 114 209 5.75E-28 T 13-10-2018 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Gene3D G3DSA:3.30.950.10 332 457 7.8E-46 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Gene3D G3DSA:3.40.50.720 1 112 5.6E-31 T 13-10-2018 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 4.2E-91 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 426 6.7E-49 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Gene3D G3DSA:1.10.8.210 149 213 8.2E-36 T 13-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Pfam PF13241 Putative NAD(P)-binding 6 115 3.1E-25 T 13-10-2018 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Gene3D G3DSA:3.40.1010.10 214 331 3.0E-43 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 SUPERFAMILY SSF53790 215 456 1.44E-77 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 PIRSF PIRSF036426 1 457 4.1E-204 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 7.8E-18 T 13-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_01795 918f68b0639b9da5bd7d5526b709b3b5 457 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 7.2E-9 T 13-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 Pfam PF01228 Glycine radical 16 108 6.6E-23 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 2.9E-70 T 13-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 SUPERFAMILY SSF51998 64 126 3.07E-24 T 13-10-2018 CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 PIRSF PIRSF000378 2 127 7.1E-56 T 13-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 43.504 T 13-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CS348_06570 bc8c77d4154fbdced977f20e4cab8ed1 127 Gene3D G3DSA:3.20.70.20 58 127 7.1E-26 T 13-10-2018 CS348_16580 43191833cb94b74a5e55947144717b8a 405 Pfam PF06519 TolA C-terminal 311 403 3.5E-36 T 13-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 CS348_16580 43191833cb94b74a5e55947144717b8a 405 SUPERFAMILY SSF74653 319 405 1.77E-18 T 13-10-2018 CS348_16580 43191833cb94b74a5e55947144717b8a 405 TIGRFAM TIGR02794 tolA_full: protein TolA 12 226 4.1E-50 T 13-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 CS348_16580 43191833cb94b74a5e55947144717b8a 405 TIGRFAM TIGR02794 tolA_full: protein TolA 211 404 7.4E-49 T 13-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 CS348_16580 43191833cb94b74a5e55947144717b8a 405 Gene3D G3DSA:3.30.1150.10 328 400 8.3E-30 T 13-10-2018 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 Pfam PF17203 Single cache domain 3 35 168 2.1E-8 T 13-10-2018 IPR033463 Single cache domain 3 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 SMART SM00388 255 320 1.3E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 SUPERFAMILY SSF55874 311 469 2.23E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 469 1.5E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 319 1.6E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 SMART SM00387 363 473 1.7E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 SUPERFAMILY SSF47384 239 320 4.32E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 SUPERFAMILY SSF103190 79 177 2.16E-12 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 Gene3D G3DSA:3.30.450.20 55 166 2.5E-7 T 13-10-2018 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 Gene3D G3DSA:3.30.565.10 327 473 1.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 Gene3D G3DSA:1.10.287.130 204 316 1.4E-13 T 13-10-2018 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 8.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 451 8.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 8.4E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20420 945cd71e33fe03ebc553553ad6d4952b 474 SMART SM00304 204 255 2.4E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_10180 07eb260fa2d0c00e85111102ab8ea1df 379 SUPERFAMILY SSF48208 25 377 2.15E-93 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CS348_10180 07eb260fa2d0c00e85111102ab8ea1df 379 Gene3D G3DSA:1.50.10.10 1 379 8.2E-175 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CS348_10180 07eb260fa2d0c00e85111102ab8ea1df 379 Pfam PF07470 Glycosyl Hydrolase Family 88 38 377 1.0E-113 T 13-10-2018 IPR010905 Glycosyl hydrolase, family 88 CS348_18690 1c4201ddae5bd6436f57985fe89784bf 178 SUPERFAMILY SSF49401 27 178 2.49E-26 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_18690 1c4201ddae5bd6436f57985fe89784bf 178 Pfam PF00419 Fimbrial protein 28 178 3.3E-15 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_18690 1c4201ddae5bd6436f57985fe89784bf 178 Gene3D G3DSA:2.60.40.1090 26 178 1.8E-29 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 Gene3D G3DSA:1.10.580.10 42 368 2.8E-135 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 ProSitePatterns PS00480 Citrate synthase signature. 271 283 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 Gene3D G3DSA:1.10.230.10 237 335 2.8E-135 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 Pfam PF00285 Citrate synthase, C-terminal domain 22 370 6.9E-116 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PIRSF PIRSF001369 15 389 1.3E-110 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 SUPERFAMILY SSF48256 22 382 6.15E-124 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PRINTS PR00143 Citrate synthase signature 139 152 1.8E-37 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PRINTS PR00143 Citrate synthase signature 211 239 1.8E-37 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PRINTS PR00143 Citrate synthase signature 341 355 1.8E-37 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PRINTS PR00143 Citrate synthase signature 264 284 1.8E-37 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PRINTS PR00143 Citrate synthase signature 321 337 1.8E-37 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 PRINTS PR00143 Citrate synthase signature 189 204 1.8E-37 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_18530 d11394b1956d5eceef1cdcc56d03e9ba 389 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 21 388 2.9E-167 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 14 110 5.2E-34 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 SMART SM00922 128 259 7.0E-16 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 Pfam PF13378 Enolase C-terminal domain-like 136 379 1.3E-42 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 85 110 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 209 240 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 Gene3D G3DSA:3.30.390.10 6 401 8.1E-175 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 SUPERFAMILY SSF51604 98 388 1.7E-79 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 Gene3D G3DSA:3.20.20.120 105 369 8.1E-175 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_12515 7cdfc2e8a7033ff2d517cab6787b4546 404 SUPERFAMILY SSF54826 1 112 9.87E-34 T 13-10-2018 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 259 36.028 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 13-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 Gene3D G3DSA:3.40.1160.10 1 259 1.3E-88 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 Pfam PF01472 PUA domain 276 350 6.8E-22 T 13-10-2018 IPR002478 PUA domain GO:0003723 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 1.6E-56 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 1.6E-56 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 1.6E-56 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 1.6E-56 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 1.6E-56 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 Pfam PF00696 Amino acid kinase family 6 235 3.7E-44 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 SUPERFAMILY SSF53633 6 256 9.69E-65 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 PIRSF PIRSF000729 1 367 8.2E-146 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 SMART SM00359 276 359 3.6E-22 T 13-10-2018 IPR002478 PUA domain GO:0003723 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 SUPERFAMILY SSF88697 276 365 2.49E-23 T 13-10-2018 IPR015947 PUA-like superfamily CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 1.4E-156 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CS348_18730 faead036e6c9cfbbf0b78c7c02ca4799 367 Gene3D G3DSA:2.30.130.10 266 366 5.4E-31 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 SUPERFAMILY SSF142019 94 303 4.05E-61 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 2.7E-32 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Gene3D G3DSA:1.10.1060.10 366 444 1.2E-10 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 SUPERFAMILY SSF46548 335 437 6.98E-20 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Gene3D G3DSA:3.40.50.11540 144 265 4.1E-13 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Pfam PF10531 SLBB domain 296 344 1.1E-12 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 1.6E-47 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 6.3E-180 T 13-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 732 271.142 T 13-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 CS348_12780 9ced455cddd657b96141b46fc9c9d0dc 732 Pfam PF12838 4Fe-4S dicluster domain 376 430 9.8E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_14615 703c00d51bfc307deb66e50e41bf5061 194 SUPERFAMILY SSF55729 12 185 2.75E-42 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_14615 703c00d51bfc307deb66e50e41bf5061 194 Gene3D G3DSA:3.40.630.30 10 191 1.9E-46 T 13-10-2018 CS348_14615 703c00d51bfc307deb66e50e41bf5061 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 1.6E-19 T 13-10-2018 IPR000182 GNAT domain CS348_08145 df31f19885af9566bb591caeccd9d587 299 SUPERFAMILY SSF88713 4 282 4.17E-24 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CS348_08145 df31f19885af9566bb591caeccd9d587 299 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 295 66.392 T 13-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 CS348_08145 df31f19885af9566bb591caeccd9d587 299 Pfam PF01522 Polysaccharide deacetylase 15 160 1.5E-8 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Gene3D G3DSA:3.40.1110.10 445 560 2.7E-81 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Pfam PF00702 haloacid dehalogenase-like hydrolase 432 639 2.4E-34 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 ProSitePatterns PS01047 Heavy-metal-associated domain. 54 83 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 183 730 1.0E-161 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 206 705 4.1E-80 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Gene3D G3DSA:2.70.150.20 233 338 8.5E-36 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Pfam PF00122 E1-E2 ATPase 234 414 4.9E-49 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Pfam PF00403 Heavy-metal-associated domain 53 110 1.4E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 SUPERFAMILY SSF81665 186 715 3.01E-20 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 SUPERFAMILY SSF55008 49 112 1.03E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 436 442 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 183 728 2.4E-179 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 SUPERFAMILY SSF81653 236 333 3.53E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Gene3D G3DSA:3.40.50.1000 415 678 2.7E-81 T 13-10-2018 IPR023214 HAD superfamily CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 283 297 7.9E-28 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 553 564 7.9E-28 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 626 645 7.9E-28 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 575 585 7.9E-28 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 434 448 7.9E-28 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 649 661 7.9E-28 T 13-10-2018 CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 SUPERFAMILY SSF56784 433 726 2.47E-50 T 13-10-2018 IPR036412 HAD-like superfamily CS348_01355 ecf1c482ae21a9b4b1a6204b4a3415a7 732 Gene3D G3DSA:3.30.70.100 46 117 2.0E-20 T 13-10-2018 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Gene3D G3DSA:3.40.50.300 26 252 1.2E-76 T 13-10-2018 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Pfam PF00270 DEAD/DEAH box helicase 85 233 7.9E-6 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Pfam PF04408 Helicase associated domain (HA2) 466 557 3.3E-17 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 SMART SM00487 75 259 1.7E-27 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Pfam PF11898 Domain of unknown function (DUF3418) 713 1297 1.0E-236 T 13-10-2018 IPR024590 RNA helicase HrpA, C-terminal CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 SMART SM00847 464 559 1.2E-37 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 SUPERFAMILY SSF52540 74 601 7.9E-112 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Gene3D G3DSA:1.20.120.1080 449 551 3.4E-19 T 13-10-2018 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Pfam PF00271 Helicase conserved C-terminal domain 286 403 2.4E-11 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Gene3D G3DSA:3.40.50.300 253 421 9.8E-57 T 13-10-2018 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 SMART SM00382 92 384 5.8E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 SMART SM00490 304 404 7.4E-16 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 13 1297 0.0 T 13-10-2018 IPR010222 RNA helicase HrpA GO:0004004 CS348_11765 0671d6498a281e69c8c8cad30ea94811 1300 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 622 698 1.8E-18 T 13-10-2018 IPR011709 Domain of unknown function DUF1605 CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 57.747 T 13-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Pfam PF03882 MukF winged-helix domain 3 117 8.3E-58 T 13-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 SUPERFAMILY SSF140570 119 281 2.48E-77 T 13-10-2018 IPR036141 MukF, middle domain superfamily CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Pfam PF17193 MukF C-terminal domain 283 440 1.6E-80 T 13-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Gene3D G3DSA:1.20.58.590 119 311 9.7E-90 T 13-10-2018 IPR036141 MukF, middle domain superfamily CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Gene3D G3DSA:1.10.225.40 353 440 1.3E-44 T 13-10-2018 IPR038198 MukF, C-terminal domain superfamily CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Gene3D G3DSA:1.10.10.10 24 118 3.7E-54 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 PIRSF PIRSF018282 1 440 7.3E-245 T 13-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 Pfam PF17192 MukF middle domain 121 281 4.2E-85 T 13-10-2018 IPR033440 Chromosome partition protein MukF, middle domain CS348_15265 4e8e715d3747de74320d9577b000ad7f 440 SUPERFAMILY SSF46785 8 118 1.83E-48 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_03475 626a66ccdbe2493813608ce15939ad3c 219 Pfam PF09335 SNARE associated Golgi protein 48 173 1.0E-18 T 13-10-2018 IPR032816 SNARE associated Golgi protein CS348_18780 8708bc4537a5d8250778df28aba85e8b 255 Pfam PF13230 Glutamine amidotransferases class-II 1 252 3.0E-114 T 13-10-2018 IPR026869 Putative glutamine amidotransferase type 2 CS348_18780 8708bc4537a5d8250778df28aba85e8b 255 Gene3D G3DSA:3.60.20.10 1 255 8.1E-98 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_18780 8708bc4537a5d8250778df28aba85e8b 255 SUPERFAMILY SSF56235 2 252 2.54E-52 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_21115 f1aecc471685b872728045855bfe559b 85 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 85 29.373 T 13-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair CS348_21115 f1aecc471685b872728045855bfe559b 85 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 85 1.2E-40 T 13-10-2018 IPR018654 Putative toxin of bacterial toxin-antitoxin pair CS348_08920 ae340e32598a6e4b3d05983dd6a5964c 266 SUPERFAMILY SSF53613 5 265 5.61E-81 T 13-10-2018 IPR029056 Ribokinase-like CS348_08920 ae340e32598a6e4b3d05983dd6a5964c 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 2.2E-105 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08920 ae340e32598a6e4b3d05983dd6a5964c 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.9E-94 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CS348_08920 ae340e32598a6e4b3d05983dd6a5964c 266 Gene3D G3DSA:3.40.1190.20 1 266 7.2E-103 T 13-10-2018 IPR029056 Ribokinase-like CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 Gene3D G3DSA:1.20.120.30 35 180 8.7E-60 T 13-10-2018 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 Pfam PF02203 Tar ligand binding domain homologue 1 171 7.4E-47 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 Pfam PF00672 HAMP domain 215 262 6.0E-12 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 SMART SM00319 44 180 7.3E-55 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 SMART SM00283 267 514 5.0E-94 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 292 314 - T 13-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 SUPERFAMILY SSF47170 39 178 1.83E-46 T 13-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 SUPERFAMILY SSF58104 234 518 3.27E-77 T 13-10-2018 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 Gene3D G3DSA:1.10.287.950 214 516 6.7E-99 T 13-10-2018 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 189 209 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 5.2E-91 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 482 3.2E-60 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_10140 f04b5bc1ef23e48fa8e2bb4bb4a174b3 553 SMART SM00304 214 266 1.7E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_16200 2535174cd70e9fb7638ed5b4cef82506 308 Gene3D G3DSA:3.40.50.150 38 296 2.4E-79 T 13-10-2018 CS348_16200 2535174cd70e9fb7638ed5b4cef82506 308 Pfam PF05971 Protein of unknown function (DUF890) 3 296 9.2E-147 T 13-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 CS348_16200 2535174cd70e9fb7638ed5b4cef82506 308 PIRSF PIRSF029038 1 308 5.5E-147 T 13-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 CS348_16200 2535174cd70e9fb7638ed5b4cef82506 308 SUPERFAMILY SSF53335 43 295 1.04E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_16200 2535174cd70e9fb7638ed5b4cef82506 308 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 5 298 53.577 T 13-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 CS348_00555 a74f44700be9c9c5d0f031baa1e01fbd 198 SUPERFAMILY SSF46689 5 83 7.48E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_00555 a74f44700be9c9c5d0f031baa1e01fbd 198 SUPERFAMILY SSF48498 86 193 8.09E-7 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_00555 a74f44700be9c9c5d0f031baa1e01fbd 198 Gene3D G3DSA:1.10.357.10 9 198 6.7E-78 T 13-10-2018 CS348_00555 a74f44700be9c9c5d0f031baa1e01fbd 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CS348_00555 a74f44700be9c9c5d0f031baa1e01fbd 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.844 T 13-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 CS348_00555 a74f44700be9c9c5d0f031baa1e01fbd 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 61 5.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_08255 bf2841a8b822709618e0e68e58977eef 396 Gene3D G3DSA:1.20.1250.20 4 384 6.3E-53 T 13-10-2018 CS348_08255 bf2841a8b822709618e0e68e58977eef 396 Pfam PF07690 Major Facilitator Superfamily 14 346 1.4E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08255 bf2841a8b822709618e0e68e58977eef 396 SUPERFAMILY SSF103473 1 384 7.19E-59 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_05470 10fa6541bc976793916db94911229f14 310 Gene3D G3DSA:3.40.190.290 98 300 3.5E-58 T 13-10-2018 CS348_05470 10fa6541bc976793916db94911229f14 310 Gene3D G3DSA:1.10.10.10 9 97 2.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05470 10fa6541bc976793916db94911229f14 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 3.6E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_05470 10fa6541bc976793916db94911229f14 310 SUPERFAMILY SSF46785 6 119 1.03E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05470 10fa6541bc976793916db94911229f14 310 Pfam PF03466 LysR substrate binding domain 95 301 1.2E-44 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_05470 10fa6541bc976793916db94911229f14 310 SUPERFAMILY SSF53850 96 301 2.79E-42 T 13-10-2018 CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 Pfam PF07729 FCD domain 128 255 6.1E-22 T 13-10-2018 IPR011711 GntR, C-terminal CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 88 104 1.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 74 88 1.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 SUPERFAMILY SSF48008 126 261 1.36E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 SMART SM00895 128 256 9.2E-18 T 13-10-2018 IPR011711 GntR, C-terminal CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 SMART SM00345 55 114 2.7E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 51 114 4.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 Gene3D G3DSA:1.20.120.530 123 261 2.3E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 Gene3D G3DSA:1.10.10.10 45 121 8.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12330 ddbbc44e2ca4d54ef0bc37023cec2d63 263 SUPERFAMILY SSF46785 46 118 4.02E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04470 eae050ef5a30b4231a40e165b09ff976 138 SMART SM00732 3 103 3.8E-43 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CS348_04470 eae050ef5a30b4231a40e165b09ff976 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 6 135 8.0E-62 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CS348_04470 eae050ef5a30b4231a40e165b09ff976 138 Pfam PF03652 Holliday junction resolvase 4 135 1.1E-43 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CS348_04470 eae050ef5a30b4231a40e165b09ff976 138 SUPERFAMILY SSF53098 3 136 1.67E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_04470 eae050ef5a30b4231a40e165b09ff976 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 3 138 26.415 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CS348_04470 eae050ef5a30b4231a40e165b09ff976 138 Gene3D G3DSA:3.30.420.140 1 138 2.2E-48 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 CS348_12095 31a755d8ea98560a8eeef118242e7455 231 Pfam PF02613 Nitrate reductase delta subunit 44 151 7.9E-12 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_12095 31a755d8ea98560a8eeef118242e7455 231 SUPERFAMILY SSF89155 2 156 9.29E-29 T 13-10-2018 IPR036411 TorD-like superfamily CS348_12095 31a755d8ea98560a8eeef118242e7455 231 Gene3D G3DSA:1.20.120.700 5 61 1.0E-11 T 13-10-2018 CS348_12095 31a755d8ea98560a8eeef118242e7455 231 Gene3D G3DSA:1.10.4070.10 62 120 1.0E-11 T 13-10-2018 CS348_12095 31a755d8ea98560a8eeef118242e7455 231 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 9 154 2.0E-39 T 13-10-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 SUPERFAMILY SSF101386 6 109 2.62E-26 T 13-10-2018 CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 Gene3D G3DSA:1.10.287.1080 132 266 5.8E-49 T 13-10-2018 CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 TIGRFAM TIGR00444 mazG: MazG family protein 13 260 4.5E-123 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 30 103 5.4E-28 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 172 230 5.1E-7 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 Gene3D G3DSA:1.10.287.1080 3 128 7.7E-50 T 13-10-2018 CS348_05250 07c3c9f04a7b0334de216005ab3a87b0 266 SUPERFAMILY SSF101386 138 239 1.68E-23 T 13-10-2018 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 Pfam PF11760 Cobalamin synthesis G N-terminal 54 134 3.0E-35 T 13-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 Pfam PF11761 Cobalamin biosynthesis central region 140 215 3.1E-7 T 13-10-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 SUPERFAMILY SSF159664 224 349 1.03E-31 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 Pfam PF01890 Cobalamin synthesis G C-terminus 231 346 2.0E-24 T 13-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 SUPERFAMILY SSF159672 6 238 1.83E-58 T 13-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 Gene3D G3DSA:3.40.50.11220 12 129 9.1E-32 T 13-10-2018 CS348_09525 144ece23b0ab7e61e235b6626acc1f16 351 Gene3D G3DSA:3.30.420.180 223 351 1.4E-30 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 Gene3D G3DSA:1.20.58.340 140 262 6.7E-44 T 13-10-2018 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 Hamap MF_01565 Zinc transport protein ZntB [zntB]. 1 327 71.74 T 13-10-2018 IPR023714 Zinc transport protein ZntB GO:0005385|GO:0005886|GO:0071577 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 Gene3D G3DSA:3.30.460.20 1 139 1.8E-47 T 13-10-2018 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 Gene3D G3DSA:1.20.58.340 270 327 1.7E-10 T 13-10-2018 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 SUPERFAMILY SSF143865 7 255 4.71E-50 T 13-10-2018 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 SUPERFAMILY SSF144083 265 324 1.19E-12 T 13-10-2018 CS348_11670 4aef2eef59ae8aeefb03ffb9b2144b66 327 Pfam PF01544 CorA-like Mg2+ transporter protein 38 323 2.8E-62 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CS348_17200 00214f71e6ea04df4d31681d47d35498 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.0E-103 T 13-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CS348_17200 00214f71e6ea04df4d31681d47d35498 187 SUPERFAMILY SSF52833 1 186 1.98E-53 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_17200 00214f71e6ea04df4d31681d47d35498 187 Pfam PF00578 AhpC/TSA family 10 133 1.5E-32 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_17200 00214f71e6ea04df4d31681d47d35498 187 PIRSF PIRSF000239 1 187 3.3E-50 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_17200 00214f71e6ea04df4d31681d47d35498 187 Gene3D G3DSA:3.40.30.10 1 186 1.2E-58 T 13-10-2018 CS348_17200 00214f71e6ea04df4d31681d47d35498 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 2.1E-6 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_13960 a344ba8363acc28bf847617efeb21949 115 Pfam PF04343 Protein of unknown function, DUF488 5 112 5.0E-30 T 13-10-2018 IPR007438 Protein of unknown function DUF488 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Gene3D G3DSA:2.40.50.100 59 92 2.4E-9 T 13-10-2018 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Pfam PF00529 HlyD membrane-fusion protein of T1SS 32 396 2.3E-16 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Gene3D G3DSA:1.10.287.470 225 291 1.7E-12 T 13-10-2018 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Gene3D G3DSA:1.10.287.470 93 113 2.4E-9 T 13-10-2018 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 SUPERFAMILY SSF51230 56 102 2.04E-5 T 13-10-2018 IPR011053 Single hybrid motif CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 ProSitePatterns PS00543 HlyD family secretion proteins signature. 404 426 - T 13-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Gene3D G3DSA:2.40.30.170 329 415 1.7E-12 T 13-10-2018 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Gene3D G3DSA:2.40.50.100 292 328 1.7E-12 T 13-10-2018 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 20 440 6.5E-114 T 13-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 361 384 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 337 361 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 404 419 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 419 439 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 29 52 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 71 91 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 304 325 1.3E-61 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_25625 bca570d5b41e7cf722d52e1db7603e7d 440 Gene3D G3DSA:2.40.30.170 47 57 2.4E-9 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 SMART SM00433 35 797 7.7E-284 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 793 6.6E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Pfam PF01751 Toprim domain 419 531 4.1E-18 T 13-10-2018 IPR006171 TOPRIM domain CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Gene3D G3DSA:3.40.50.670 706 803 7.5E-27 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 9.3E-71 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Gene3D G3DSA:3.10.20.690 592 683 1.7E-39 T 13-10-2018 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 SUPERFAMILY SSF56719 394 795 1.46E-86 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 3.8E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Gene3D G3DSA:3.30.230.10 221 392 1.2E-76 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 1.5E-80 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 SUPERFAMILY SSF55874 4 220 3.14E-77 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 116.215 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Pfam PF00204 DNA gyrase B 221 390 1.6E-59 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Gene3D G3DSA:3.40.50.670 393 569 1.3E-72 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 Gene3D G3DSA:3.30.565.10 1 220 4.8E-98 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 SUPERFAMILY SSF54211 221 392 3.79E-62 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 SMART SM00387 31 175 4.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_00020 e8cb83b5a5ae9653c05b180cc7aaa914 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 Pfam PF13545 Crp-like helix-turn-helix domain 182 256 2.8E-16 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 Pfam PF00027 Cyclic nucleotide-binding domain 65 146 1.1E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 SMART SM00100 44 165 2.9E-22 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 SUPERFAMILY SSF51206 37 176 1.44E-31 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 SMART SM00419 201 249 2.8E-13 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 Gene3D G3DSA:1.10.10.10 179 264 1.0E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 SUPERFAMILY SSF46785 179 260 3.97E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 Gene3D G3DSA:2.60.120.10 57 178 4.4E-49 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 207 223 2.4E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 223 238 2.4E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_11645 6d500bda4edd0790cda1e771d4e402ea 264 ProSitePatterns PS00042 Crp-type HTH domain signature. 209 232 - T 13-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 SUPERFAMILY SSF47413 1 59 3.52E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 Gene3D G3DSA:3.40.50.2300 62 302 8.1E-69 T 13-10-2018 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 Pfam PF13377 Periplasmic binding protein-like domain 169 329 6.8E-34 T 13-10-2018 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 SMART SM00354 1 71 1.5E-33 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 Gene3D G3DSA:1.10.260.40 1 59 1.5E-23 T 13-10-2018 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.3E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 Gene3D G3DSA:3.40.50.2300 159 289 8.1E-69 T 13-10-2018 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.4E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.4E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_08680 a95e5db57175641c9a9f8deeb3f11237 340 SUPERFAMILY SSF53822 61 331 1.2E-77 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 SUPERFAMILY SSF159127 1 76 7.46E-16 T 13-10-2018 IPR037254 HupF/HypC superfamily CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 57 69 1.2E-6 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.2E-6 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 39 55 1.2E-6 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 13-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 75 1.7E-17 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 Pfam PF01455 HupF/HypC family 1 66 3.7E-13 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_12360 ae8d0cbd7571f7068c132e8c11b4b252 99 Gene3D G3DSA:2.40.50.970 1 75 3.0E-10 T 13-10-2018 IPR037254 HupF/HypC superfamily CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Gene3D G3DSA:3.40.1190.10 108 324 1.2E-89 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 SUPERFAMILY SSF53623 105 322 2.49E-73 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 326 418 1.4E-20 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Pfam PF01225 Mur ligase family, catalytic domain 21 118 1.5E-29 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 474 5.0E-182 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 481 43.213 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Gene3D G3DSA:3.90.190.20 325 491 9.5E-49 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 SUPERFAMILY SSF51984 20 106 3.4E-29 T 13-10-2018 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Gene3D G3DSA:3.40.50.720 20 107 1.9E-33 T 13-10-2018 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 SUPERFAMILY SSF53244 323 476 8.42E-45 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19690 dc5915adedc91d0de2c9ba123a6c329f 491 Pfam PF08245 Mur ligase middle domain 124 304 4.8E-28 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CS348_07070 3acebdcb2f27a7b246e1a13bdbcc817f 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 1 191 2.5E-82 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CS348_07070 3acebdcb2f27a7b246e1a13bdbcc817f 212 Gene3D G3DSA:3.40.50.170 1 212 7.5E-90 T 13-10-2018 CS348_07070 3acebdcb2f27a7b246e1a13bdbcc817f 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 133 156 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_07070 3acebdcb2f27a7b246e1a13bdbcc817f 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 2 187 31.644 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CS348_07070 3acebdcb2f27a7b246e1a13bdbcc817f 212 SUPERFAMILY SSF53328 1 206 1.7E-65 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_07070 3acebdcb2f27a7b246e1a13bdbcc817f 212 Pfam PF00551 Formyl transferase 1 181 4.6E-66 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_07125 9bd146c5617d48b561818f4fd8203e22 156 SUPERFAMILY SSF52833 3 154 1.92E-50 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_07125 9bd146c5617d48b561818f4fd8203e22 156 Pfam PF00578 AhpC/TSA family 7 134 3.8E-39 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_07125 9bd146c5617d48b561818f4fd8203e22 156 PIRSF PIRSF000239 1 153 2.3E-18 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_07125 9bd146c5617d48b561818f4fd8203e22 156 Gene3D G3DSA:3.40.30.10 4 156 1.8E-49 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 1.2E-89 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 SUPERFAMILY SSF64484 16 1363 0.0 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:2.40.50.100 948 1022 1.3E-26 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:1.10.274.100 490 640 1.7E-35 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 6.9E-26 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1315 1.8E-77 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:1.10.132.30 641 790 4.2E-67 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 SMART SM00663 235 514 1.1E-184 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:2.40.50.100 1151 1215 1.8E-60 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:1.10.40.90 374 416 2.0E-21 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:1.10.1790.20 1135 1314 1.8E-60 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.9E-27 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.7E-18 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:1.10.150.390 1316 1375 3.0E-28 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Gene3D G3DSA:2.40.50.100 1023 1126 8.0E-31 T 13-10-2018 CS348_22830 8c40ce9d995fedcb5e3de0b9778b9215 1407 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 10 1374 18.982 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 PIRSF PIRSF000379 8 760 0.0 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 Gene3D G3DSA:3.20.70.20 2 760 0.0 T 13-10-2018 CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 SUPERFAMILY SSF51998 4 759 5.8E-296 T 13-10-2018 CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 Pfam PF01228 Glycine radical 630 741 1.4E-43 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CS348_15360 b440ad87f9844c7fd59986e1b9bc3ffc 760 Pfam PF02901 Pyruvate formate lyase-like 23 614 1.6E-207 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CS348_08780 efe22969cdaee2c9e83399db0d017577 478 Gene3D G3DSA:1.20.1600.10 57 476 1.5E-88 T 13-10-2018 CS348_08780 efe22969cdaee2c9e83399db0d017577 478 Pfam PF02321 Outer membrane efflux protein 67 266 1.4E-19 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_08780 efe22969cdaee2c9e83399db0d017577 478 Pfam PF02321 Outer membrane efflux protein 294 445 3.5E-12 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_08780 efe22969cdaee2c9e83399db0d017577 478 Gene3D G3DSA:2.20.200.10 104 364 1.5E-88 T 13-10-2018 CS348_08780 efe22969cdaee2c9e83399db0d017577 478 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 475 1.0E-88 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 CS348_08780 efe22969cdaee2c9e83399db0d017577 478 SUPERFAMILY SSF56954 4 476 1.23E-79 T 13-10-2018 CS348_03280 c7c89bc4a2da50906b2df0febb6e4629 598 Gene3D G3DSA:2.60.40.3100 28 133 4.7E-43 T 13-10-2018 IPR038477 Arylsulfotransferase, N-terminal domain superfamily CS348_03280 c7c89bc4a2da50906b2df0febb6e4629 598 Pfam PF05935 Arylsulfotransferase (ASST) 146 587 3.9E-139 T 13-10-2018 IPR010262 Arylsulfotransferase, bacteria GO:0004062 CS348_03280 c7c89bc4a2da50906b2df0febb6e4629 598 Pfam PF17425 Arylsulfotransferase Ig-like domain 42 127 1.3E-25 T 13-10-2018 IPR035391 Arylsulfotransferase, Ig-like domain CS348_03280 c7c89bc4a2da50906b2df0febb6e4629 598 Hamap MF_00933 Arylsulfate sulfotransferase AssT [assT]. 1 598 95.835 T 13-10-2018 IPR028610 Arylsulfate sulfotransferase AssT, Enterobacteria GO:0004062 CS348_22495 1c38cfaa2570d6404250ef3641275b72 69 Pfam PF05532 CsbD-like 4 56 1.5E-21 T 13-10-2018 IPR008462 CsbD-like domain CS348_22495 1c38cfaa2570d6404250ef3641275b72 69 PIRSF PIRSF039008 1 66 5.7E-32 T 13-10-2018 IPR026042 Stress response protein YjbJ CS348_22495 1c38cfaa2570d6404250ef3641275b72 69 Gene3D G3DSA:1.10.1470.10 1 69 6.4E-35 T 13-10-2018 IPR036629 YjbJ superfamily CS348_22495 1c38cfaa2570d6404250ef3641275b72 69 SUPERFAMILY SSF69047 1 69 1.44E-26 T 13-10-2018 IPR036629 YjbJ superfamily CS348_05420 84c33e29e38ba195dc582a63b83acdd3 475 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 416 1.8E-105 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CS348_05420 84c33e29e38ba195dc582a63b83acdd3 475 Gene3D G3DSA:3.40.1670.10 325 440 1.7E-27 T 13-10-2018 CS348_05420 84c33e29e38ba195dc582a63b83acdd3 475 Hamap MF_01985 Phenolic acid decarboxylase subunit C. 1 472 71.071 T 13-10-2018 IPR032902 Phenolic acid decarboxylase subunit C GO:0016831 CS348_05420 84c33e29e38ba195dc582a63b83acdd3 475 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 441 2.0E-125 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CS348_05420 84c33e29e38ba195dc582a63b83acdd3 475 SUPERFAMILY SSF143968 312 467 2.48E-41 T 13-10-2018 CS348_05420 84c33e29e38ba195dc582a63b83acdd3 475 SUPERFAMILY SSF50475 3 309 6.28E-82 T 13-10-2018 CS348_08275 31592e6bf05847769f9de70cff96bbf4 242 SUPERFAMILY SSF53335 17 224 6.49E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_08275 31592e6bf05847769f9de70cff96bbf4 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 16 240 37.284 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 CS348_08275 31592e6bf05847769f9de70cff96bbf4 242 Pfam PF13489 Methyltransferase domain 57 186 4.2E-24 T 13-10-2018 CS348_08275 31592e6bf05847769f9de70cff96bbf4 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 3.8E-91 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 CS348_08275 31592e6bf05847769f9de70cff96bbf4 242 Gene3D G3DSA:3.40.50.150 16 240 8.5E-77 T 13-10-2018 CS348_01320 600b8ac753645b3415b2f6739a6ef592 192 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 88 152 1.4E-9 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_01320 600b8ac753645b3415b2f6739a6ef592 192 Gene3D G3DSA:3.90.470.20 18 109 8.5E-14 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_01320 600b8ac753645b3415b2f6739a6ef592 192 SUPERFAMILY SSF56214 87 181 1.09E-14 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_01320 600b8ac753645b3415b2f6739a6ef592 192 SUPERFAMILY SSF56214 29 79 2.77E-9 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_08910 d61d29383d0733a373494bd5da38c94c 104 Pfam PF11776 Nickel/cobalt transporter regulator 44 93 8.6E-20 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CS348_08910 d61d29383d0733a373494bd5da38c94c 104 Gene3D G3DSA:3.10.450.160 22 104 2.4E-38 T 13-10-2018 CS348_08910 d61d29383d0733a373494bd5da38c94c 104 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 19 93 5.0E-34 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SMART SM01058 476 573 6.0E-50 T 13-10-2018 IPR003711 CarD-like/TRCF domain CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:3.40.50.11180 24 334 6.6E-133 T 13-10-2018 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:3.90.1150.50 1001 1148 2.9E-55 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:3.40.50.300 539 778 3.2E-237 T 13-10-2018 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Pfam PF00271 Helicase conserved C-terminal domain 803 906 8.6E-18 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:3.30.2060.10 128 213 6.6E-133 T 13-10-2018 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SUPERFAMILY SSF52540 520 780 5.4E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SUPERFAMILY SSF52540 779 987 3.08E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SUPERFAMILY SSF143517 992 1144 4.45E-45 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SUPERFAMILY SSF52540 351 463 2.2E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Pfam PF00270 DEAD/DEAH box helicase 602 762 2.6E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SUPERFAMILY SSF141259 467 545 2.09E-23 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SMART SM00982 1005 1105 2.3E-50 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SMART SM00487 597 787 4.1E-35 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SUPERFAMILY SSF52540 6 341 2.27E-101 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:2.30.30.840 480 538 3.2E-237 T 13-10-2018 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:3.40.50.300 475 987 3.2E-237 T 13-10-2018 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 28 1144 28.067 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Pfam PF02559 CarD-like/TRCF domain 477 572 7.0E-25 T 13-10-2018 IPR003711 CarD-like/TRCF domain CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 SMART SM00490 823 907 1.6E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Pfam PF03461 TRCF domain 1006 1098 3.1E-29 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CS348_14330 afdfbf643d4513a2fcb568a3abef11dc 1148 Gene3D G3DSA:3.40.50.11140 354 450 1.2E-40 T 13-10-2018 CS348_23935 7d248078e8e54b6356369d6db1cf7c64 182 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 5.3E-32 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 CS348_23935 7d248078e8e54b6356369d6db1cf7c64 182 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.6E-33 T 13-10-2018 CS348_23935 7d248078e8e54b6356369d6db1cf7c64 182 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.6E-33 T 13-10-2018 CS348_23935 7d248078e8e54b6356369d6db1cf7c64 182 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.6E-33 T 13-10-2018 CS348_23935 7d248078e8e54b6356369d6db1cf7c64 182 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 143 19.244 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 1.1E-57 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Gene3D G3DSA:2.40.30.10 199 299 1.5E-35 T 13-10-2018 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Gene3D G3DSA:2.40.50.250 483 599 1.2E-130 T 13-10-2018 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 SUPERFAMILY SSF54980 302 387 1.69E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 2.0E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 SUPERFAMILY SSF52540 3 207 6.09E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Gene3D G3DSA:3.30.70.870 306 590 1.2E-130 T 13-10-2018 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.7E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Gene3D G3DSA:3.30.70.240 389 482 1.2E-130 T 13-10-2018 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 8.0E-294 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Gene3D G3DSA:3.40.50.300 1 198 7.6E-70 T 13-10-2018 CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 Pfam PF00679 Elongation factor G C-terminus 397 476 1.2E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 SUPERFAMILY SSF50447 151 299 3.3E-34 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_23750 da178632fab8b43077b4ed74e1370c5d 607 SUPERFAMILY SSF54980 398 512 3.36E-26 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_13035 a1203d26cc9381392fdda42fc752aab5 82 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 44 81 3.2E-19 T 13-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 CS348_20445 bee38fc8e3efcae38eec68fe5cedbc15 171 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 29.578 T 13-10-2018 IPR002786 Non-canonical purine NTP phosphatase CS348_20445 bee38fc8e3efcae38eec68fe5cedbc15 171 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 170 2.4E-67 T 13-10-2018 IPR002786 Non-canonical purine NTP phosphatase CS348_20445 bee38fc8e3efcae38eec68fe5cedbc15 171 SUPERFAMILY SSF52972 1 167 4.8E-56 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_20445 bee38fc8e3efcae38eec68fe5cedbc15 171 Pfam PF01931 Protein of unknown function DUF84 7 165 1.2E-52 T 13-10-2018 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 CS348_20445 bee38fc8e3efcae38eec68fe5cedbc15 171 Gene3D G3DSA:3.90.950.10 1 171 2.5E-69 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 399 413 - T 13-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 SUPERFAMILY SSF49785 1 181 2.55E-54 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 324 349 - T 13-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 Gene3D G3DSA:3.20.20.80 274 603 2.2E-104 T 13-10-2018 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 SUPERFAMILY SSF49303 182 273 2.73E-16 T 13-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 PRINTS PR00132 Glycosyl hydrolase family 2 signature 314 332 1.2E-17 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 PRINTS PR00132 Glycosyl hydrolase family 2 signature 399 414 1.2E-17 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 PRINTS PR00132 Glycosyl hydrolase family 2 signature 91 106 1.2E-17 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 PRINTS PR00132 Glycosyl hydrolase family 2 signature 283 297 1.2E-17 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 PRINTS PR00132 Glycosyl hydrolase family 2 signature 498 513 1.2E-17 T 13-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 Gene3D G3DSA:2.60.40.10 181 273 1.1E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 Gene3D G3DSA:2.60.120.260 1 180 4.0E-66 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 SUPERFAMILY SSF51445 274 590 8.09E-86 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 Pfam PF00703 Glycosyl hydrolases family 2 182 272 2.9E-6 T 13-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 274 592 3.7E-108 T 13-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 CS348_03640 20cadb3074a59f46d7e8979abec83c61 603 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 12 180 4.5E-51 T 13-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 SUPERFAMILY SSF51366 14 240 2.77E-76 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 17 237 1.5E-54 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 14 242 39.789 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 236 1.2E-49 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 SMART SM00934 16 237 3.5E-97 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_11350 6e4ca09a7c295e272c5216c369ffebb2 245 Gene3D G3DSA:3.20.20.70 1 245 2.9E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 59 71 5.3E-13 T 13-10-2018 IPR003004 GspF/PilC family CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 361 375 5.3E-13 T 13-10-2018 IPR003004 GspF/PilC family CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 158 186 5.3E-13 T 13-10-2018 IPR003004 GspF/PilC family CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 377 396 5.3E-13 T 13-10-2018 IPR003004 GspF/PilC family CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 Gene3D G3DSA:1.20.81.30 249 358 3.9E-21 T 13-10-2018 CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 Pfam PF00482 Type II secretion system (T2SS), protein F 64 186 1.5E-27 T 13-10-2018 IPR018076 Type II secretion system F domain CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 Pfam PF00482 Type II secretion system (T2SS), protein F 268 388 8.0E-24 T 13-10-2018 IPR018076 Type II secretion system F domain CS348_19615 9a064cfd842729d98a74c8bd9f390ccd 400 Gene3D G3DSA:1.20.81.30 53 165 2.4E-24 T 13-10-2018 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 SUPERFAMILY SSF53335 4 276 1.91E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 Gene3D G3DSA:1.10.1020.10 64 162 6.1E-29 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 Gene3D G3DSA:3.40.50.150 7 252 6.1E-29 T 13-10-2018 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 9 254 1.4E-16 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 PIRSF PIRSF000398 1 281 1.5E-49 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 34 48 3.5E-7 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 194 206 3.5E-7 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_23425 49ae6718f713db6707970cf86d3ff5cc 294 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 9 25 3.5E-7 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 SUPERFAMILY SSF54364 13 86 6.93E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 ProSitePatterns PS00938 Initiation factor 3 signature. 66 79 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 SUPERFAMILY SSF55200 90 179 3.92E-35 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 2.9E-31 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 177 8.5E-38 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 179 6.2E-78 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 Gene3D G3DSA:3.10.20.80 10 83 7.2E-33 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 Gene3D G3DSA:3.30.110.10 84 180 1.2E-39 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 CS348_13650 ea7c3837f1286bd2e32643f500aa1acc 180 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 9 179 30.826 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 Gene3D G3DSA:3.90.1150.10 34 449 3.3E-199 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 Gene3D G3DSA:3.40.640.10 100 353 3.3E-199 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 PIRSF PIRSF000521 53 205 4.2E-4 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 PIRSF PIRSF000521 214 452 6.2E-40 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 Hamap MF_01276 Putrescine aminotransferase [patA]. 1 459 86.315 T 13-10-2018 IPR017747 Putrescine aminotransferase GO:0009447|GO:0030170|GO:0033094 KEGG: 00330+2.6.1.82|MetaCyc: PWY-2|MetaCyc: PWY-6440 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 268 305 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 SUPERFAMILY SSF53383 70 449 8.16E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 TIGRFAM TIGR03372 putres_am_tran: putrescine aminotransferase 8 449 8.6E-284 T 13-10-2018 IPR017747 Putrescine aminotransferase GO:0009447|GO:0030170|GO:0033094 KEGG: 00330+2.6.1.82|MetaCyc: PWY-2|MetaCyc: PWY-6440 CS348_03135 0d3ffcf7f39596c9f537f155796e6f48 459 Pfam PF00202 Aminotransferase class-III 74 448 2.2E-102 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_17505 e1746ca9f13e5ab8e190e19ecd8a4ba5 133 Pfam PF06141 Phage minor tail protein U 3 131 9.4E-50 T 13-10-2018 IPR009312 Minor tail protein U-like CS348_17505 e1746ca9f13e5ab8e190e19ecd8a4ba5 133 SUPERFAMILY SSF143749 3 132 4.97E-47 T 13-10-2018 IPR035934 Phage tail protein-like superfamily CS348_17505 e1746ca9f13e5ab8e190e19ecd8a4ba5 133 Gene3D G3DSA:3.30.70.1700 1 133 2.9E-49 T 13-10-2018 IPR038512 GpU-like superfamily CS348_03440 5c938a4f3f7d55c9bfdc6ee8216cc7cb 84 PIRSF PIRSF002855 1 81 1.8E-22 T 13-10-2018 IPR016367 Murein-lipoprotein CS348_03440 5c938a4f3f7d55c9bfdc6ee8216cc7cb 84 SUPERFAMILY SSF58042 25 73 1.57E-18 T 13-10-2018 CS348_03440 5c938a4f3f7d55c9bfdc6ee8216cc7cb 84 Pfam PF04728 Lipoprotein leucine-zipper 27 70 1.4E-14 T 13-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 CS348_03440 5c938a4f3f7d55c9bfdc6ee8216cc7cb 84 Gene3D G3DSA:1.20.5.190 23 74 5.7E-20 T 13-10-2018 CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 SUPERFAMILY SSF49354 18 142 1.2E-39 T 13-10-2018 IPR008962 PapD-like superfamily CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 23 142 1.6E-40 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 Gene3D G3DSA:2.60.40.10 24 140 1.7E-39 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 SUPERFAMILY SSF49584 145 221 1.7E-23 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 164 219 9.6E-16 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 Gene3D G3DSA:2.60.40.10 144 225 3.6E-29 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 PRINTS PR00969 Pili chaperone signature 99 116 1.1E-33 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 PRINTS PR00969 Pili chaperone signature 124 139 1.1E-33 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 PRINTS PR00969 Pili chaperone signature 71 92 1.1E-33 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 PRINTS PR00969 Pili chaperone signature 159 174 1.1E-33 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19445 31c79e57bf34d140acc9ddc1eea4b2e0 227 PRINTS PR00969 Pili chaperone signature 24 33 1.1E-33 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 SUPERFAMILY SSF54862 1 295 7.11E-41 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 204 315 6.9E-36 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 SUPERFAMILY SSF51971 327 582 1.35E-67 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Gene3D G3DSA:3.30.70.20 62 120 1.6E-27 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Gene3D G3DSA:1.10.1060.10 180 325 1.7E-31 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Gene3D G3DSA:3.50.50.60 457 554 6.2E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Gene3D G3DSA:3.50.50.60 326 449 2.0E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Pfam PF13247 4Fe-4S dicluster domain 54 144 8.7E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Gene3D G3DSA:3.30.70.20 6 156 1.6E-27 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 188 652 9.6E-255 T 13-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 328 640 1.0E-21 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_07185 3a971e72c085f9a0ce2928776233997a 653 PRINTS PR00419 Adrenodoxin reductase family signature 394 404 1.6E-37 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 PRINTS PR00419 Adrenodoxin reductase family signature 352 365 1.6E-37 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 PRINTS PR00419 Adrenodoxin reductase family signature 505 518 1.6E-37 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 PRINTS PR00419 Adrenodoxin reductase family signature 471 485 1.6E-37 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 PRINTS PR00419 Adrenodoxin reductase family signature 329 351 1.6E-37 T 13-10-2018 CS348_07185 3a971e72c085f9a0ce2928776233997a 653 Gene3D G3DSA:3.50.50.60 555 651 2.4E-9 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01080 405cf5584b63a95d893a1ccb2e917600 300 Gene3D G3DSA:1.10.3720.10 86 298 1.5E-23 T 13-10-2018 IPR035906 MetI-like superfamily CS348_01080 405cf5584b63a95d893a1ccb2e917600 300 SUPERFAMILY SSF161098 93 280 4.71E-29 T 13-10-2018 IPR035906 MetI-like superfamily CS348_01080 405cf5584b63a95d893a1ccb2e917600 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 6.8E-16 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CS348_01080 405cf5584b63a95d893a1ccb2e917600 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 1.7E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16760 f1867c0cccb5f6032c9309737c486c73 439 Hamap MF_02073 Putrescine transporter PotE [potE]. 9 436 36.669 T 13-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 CS348_16760 f1867c0cccb5f6032c9309737c486c73 439 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 5 433 5.3E-252 T 13-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 CS348_16760 f1867c0cccb5f6032c9309737c486c73 439 PIRSF PIRSF006060 1 438 7.9E-47 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_16760 f1867c0cccb5f6032c9309737c486c73 439 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 432 9.7E-152 T 13-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CS348_16760 f1867c0cccb5f6032c9309737c486c73 439 Pfam PF13520 Amino acid permease 10 408 3.3E-47 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_16760 f1867c0cccb5f6032c9309737c486c73 439 Gene3D G3DSA:1.20.1740.10 3 438 9.7E-62 T 13-10-2018 CS348_24780 efa18e92da40f8e7665c9f98eac2150e 460 Pfam PF12083 Domain of unknown function (DUF3560) 97 215 3.3E-39 T 13-10-2018 IPR021944 Protein of unknown function DUF3560 CS348_11070 da2a76f7e1b90be28015ccb0969840fa 152 SUPERFAMILY SSF54427 25 129 2.34E-36 T 13-10-2018 IPR032710 NTF2-like domain superfamily CS348_11070 da2a76f7e1b90be28015ccb0969840fa 152 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 128 29.411 T 13-10-2018 IPR023006 Uncharacterised protein family UPF0225 CS348_11070 da2a76f7e1b90be28015ccb0969840fa 152 Pfam PF02810 SEC-C motif 2 19 1.8E-5 T 13-10-2018 IPR004027 SEC-C motif CS348_11070 da2a76f7e1b90be28015ccb0969840fa 152 Pfam PF02810 SEC-C motif 134 152 5.9E-11 T 13-10-2018 IPR004027 SEC-C motif CS348_11070 da2a76f7e1b90be28015ccb0969840fa 152 Gene3D G3DSA:3.10.450.50 1 152 3.6E-53 T 13-10-2018 CS348_11070 da2a76f7e1b90be28015ccb0969840fa 152 SUPERFAMILY SSF103642 132 151 2.94E-8 T 13-10-2018 CS348_07095 aa571a8c04c9154a52c81423e78547b1 119 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 118 4.3E-48 T 13-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 CS348_07095 aa571a8c04c9154a52c81423e78547b1 119 SUPERFAMILY SSF52833 4 118 2.8E-33 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_07095 aa571a8c04c9154a52c81423e78547b1 119 Gene3D G3DSA:3.40.30.10 2 119 2.6E-46 T 13-10-2018 CS348_07095 aa571a8c04c9154a52c81423e78547b1 119 Pfam PF03960 ArsC family 8 117 8.6E-21 T 13-10-2018 IPR006660 Arsenate reductase-like CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.5E-39 T 13-10-2018 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.5E-39 T 13-10-2018 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.5E-39 T 13-10-2018 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.5E-39 T 13-10-2018 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.375 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 SUPERFAMILY SSF51735 1 122 8.16E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 Pfam PF00549 CoA-ligase 151 271 2.2E-20 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 SUPERFAMILY SSF52210 123 287 4.71E-57 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 2.6E-146 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 Pfam PF02629 CoA binding domain 6 99 7.7E-32 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 Gene3D G3DSA:3.40.50.261 124 289 1.9E-77 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 SMART SM00881 4 100 6.5E-38 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 Gene3D G3DSA:3.40.50.720 1 123 1.9E-51 T 13-10-2018 CS348_16620 da35e271b0d2bd4b062981e6208b319b 289 PIRSF PIRSF001553 1 289 5.4E-135 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_05995 572bb0288a92191bfd0d6b69fa30e346 331 SUPERFAMILY SSF53850 24 329 3.26E-91 T 13-10-2018 CS348_05995 572bb0288a92191bfd0d6b69fa30e346 331 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 30 304 4.8E-53 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 CS348_05995 572bb0288a92191bfd0d6b69fa30e346 331 Gene3D G3DSA:3.40.190.100 113 254 1.5E-139 T 13-10-2018 CS348_05995 572bb0288a92191bfd0d6b69fa30e346 331 Gene3D G3DSA:3.40.190.10 25 326 1.5E-139 T 13-10-2018 CS348_06330 ac2f5556001c22bac534bad5eecd0e6c 409 Pfam PF13356 Arm DNA-binding domain 8 95 1.7E-16 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CS348_06330 ac2f5556001c22bac534bad5eecd0e6c 409 SUPERFAMILY SSF56349 109 389 6.77E-54 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_06330 ac2f5556001c22bac534bad5eecd0e6c 409 Pfam PF00589 Phage integrase family 219 382 2.1E-18 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_06330 ac2f5556001c22bac534bad5eecd0e6c 409 Gene3D G3DSA:1.10.150.130 101 215 1.6E-29 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_06330 ac2f5556001c22bac534bad5eecd0e6c 409 Gene3D G3DSA:1.10.443.10 216 389 3.4E-13 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_06330 ac2f5556001c22bac534bad5eecd0e6c 409 Gene3D G3DSA:3.30.160.390 6 98 1.7E-25 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CS348_14260 e13cec1e757313be580580190835aae3 373 Pfam PF08007 Cupin superfamily protein 10 310 7.5E-104 T 13-10-2018 IPR003347 JmjC domain CS348_14260 e13cec1e757313be580580190835aae3 373 Gene3D G3DSA:1.10.10.2510 205 373 2.6E-65 T 13-10-2018 CS348_14260 e13cec1e757313be580580190835aae3 373 SUPERFAMILY SSF51197 7 292 1.65E-74 T 13-10-2018 CS348_14260 e13cec1e757313be580580190835aae3 373 SMART SM00558 92 215 6.6E-12 T 13-10-2018 IPR003347 JmjC domain CS348_14260 e13cec1e757313be580580190835aae3 373 Gene3D G3DSA:2.60.120.650 2 204 1.6E-88 T 13-10-2018 CS348_07865 05b3cd337bd035f650213294bd00e95d 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_07865 05b3cd337bd035f650213294bd00e95d 260 SMART SM00062 27 256 2.2E-78 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_07865 05b3cd337bd035f650213294bd00e95d 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 5.6E-62 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_07865 05b3cd337bd035f650213294bd00e95d 260 Gene3D G3DSA:3.40.190.10 29 252 6.4E-92 T 13-10-2018 CS348_07865 05b3cd337bd035f650213294bd00e95d 260 SUPERFAMILY SSF53850 1 256 8.83E-66 T 13-10-2018 CS348_07865 05b3cd337bd035f650213294bd00e95d 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 253 6.2E-101 T 13-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 CS348_07865 05b3cd337bd035f650213294bd00e95d 260 Gene3D G3DSA:3.40.190.10 113 213 6.4E-92 T 13-10-2018 CS348_02520 7465ee83a6622e4dea06159343d9280d 166 SUPERFAMILY SSF101738 4 112 8.89E-48 T 13-10-2018 IPR036760 SspB-like superfamily CS348_02520 7465ee83a6622e4dea06159343d9280d 166 Pfam PF04386 Stringent starvation protein B 9 166 5.8E-44 T 13-10-2018 IPR007481 Stringent starvation protein B CS348_02520 7465ee83a6622e4dea06159343d9280d 166 Gene3D G3DSA:2.30.30.220 1 118 3.4E-53 T 13-10-2018 IPR036760 SspB-like superfamily CS348_02520 7465ee83a6622e4dea06159343d9280d 166 PIRSF PIRSF005276 3 166 7.7E-60 T 13-10-2018 IPR007481 Stringent starvation protein B CS348_14635 5fb333c106c81899f630c9f771704c2b 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 45.684 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_14635 5fb333c106c81899f630c9f771704c2b 348 ProSitePatterns PS00482 Dihydroorotase signature 1. 15 23 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_14635 5fb333c106c81899f630c9f771704c2b 348 Gene3D G3DSA:3.20.20.140 6 348 3.5E-107 T 13-10-2018 CS348_14635 5fb333c106c81899f630c9f771704c2b 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_14635 5fb333c106c81899f630c9f771704c2b 348 Pfam PF01979 Amidohydrolase family 15 313 4.5E-23 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CS348_14635 5fb333c106c81899f630c9f771704c2b 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 2.6E-159 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_14635 5fb333c106c81899f630c9f771704c2b 348 SUPERFAMILY SSF51556 8 347 7.74E-146 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_14635 5fb333c106c81899f630c9f771704c2b 348 PIRSF PIRSF001237 4 348 2.2E-139 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 Gene3D G3DSA:3.40.50.300 4 213 2.1E-61 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 4.7E-46 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 TIGRFAM TIGR00235 udk: uridine kinase 5 213 4.2E-98 T 13-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 PRINTS PR00988 Uridine kinase signature 157 168 3.7E-39 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 PRINTS PR00988 Uridine kinase signature 8 25 3.7E-39 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 PRINTS PR00988 Uridine kinase signature 143 153 3.7E-39 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 PRINTS PR00988 Uridine kinase signature 179 192 3.7E-39 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 PRINTS PR00988 Uridine kinase signature 87 102 3.7E-39 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 PRINTS PR00988 Uridine kinase signature 42 53 3.7E-39 T 13-10-2018 CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 SUPERFAMILY SSF52540 8 205 1.04E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09045 4853e40789e4f69a0494756a10b84c0d 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 41.823 T 13-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 Pfam PF00376 MerR family regulatory protein 2 39 1.2E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 Pfam PF09278 MerR, DNA binding 44 108 1.6E-21 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding CS348_18605 a14d10e04a39441054fd921d794b84c4 154 SMART SM00422 1 70 2.6E-32 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 SUPERFAMILY SSF46955 1 126 1.43E-39 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_18605 a14d10e04a39441054fd921d794b84c4 154 Gene3D G3DSA:1.10.1660.10 1 125 1.3E-37 T 13-10-2018 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 4.2E-53 T 13-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_18605 a14d10e04a39441054fd921d794b84c4 154 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.1E-10 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_25455 f642c11154fe3faf69c5c2c3e5c5d150 174 Pfam PF00436 Single-strand binding protein family 6 109 4.7E-41 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CS348_25455 f642c11154fe3faf69c5c2c3e5c5d150 174 SUPERFAMILY SSF50249 4 174 1.68E-57 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_25455 f642c11154fe3faf69c5c2c3e5c5d150 174 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 174 1.2E-57 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_25455 f642c11154fe3faf69c5c2c3e5c5d150 174 PIRSF PIRSF002070 2 164 4.6E-42 T 13-10-2018 CS348_25455 f642c11154fe3faf69c5c2c3e5c5d150 174 Gene3D G3DSA:2.40.50.140 1 115 3.3E-49 T 13-10-2018 CS348_25455 f642c11154fe3faf69c5c2c3e5c5d150 174 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 38.213 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_08050 0055650aaf72b63dc9f1cf3af7f08442 184 Gene3D G3DSA:1.20.120.1200 1 160 7.8E-54 T 13-10-2018 CS348_08050 0055650aaf72b63dc9f1cf3af7f08442 184 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 17 157 4.3E-33 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Gene3D G3DSA:3.40.50.300 430 633 2.0E-51 T 13-10-2018 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 4.3E-19 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 SMART SM00487 150 342 9.8E-23 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Gene3D G3DSA:3.30.360.80 713 786 2.1E-33 T 13-10-2018 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 2.6E-156 T 13-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 SUPERFAMILY SSF52540 273 643 2.48E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Gene3D G3DSA:3.40.50.10810 150 429 1.2E-112 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Gene3D G3DSA:2.30.30.140 1 53 9.2E-24 T 13-10-2018 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 SMART SM00490 517 601 3.9E-18 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 29.268 T 13-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Gene3D G3DSA:2.30.30.930 55 114 4.1E-31 T 13-10-2018 CS348_19860 820f20559c7e81aaa0c35d6255459958 968 Pfam PF00271 Helicase conserved C-terminal domain 495 601 2.6E-15 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_19860 820f20559c7e81aaa0c35d6255459958 968 SUPERFAMILY SSF52540 123 376 3.47E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Pfam PF13242 HAD-hyrolase-like 103 145 6.5E-6 T 13-10-2018 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 SUPERFAMILY SSF54211 167 251 7.84E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Gene3D G3DSA:3.30.230.40 164 254 4.2E-36 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 1.0E-82 T 13-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 37.897 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 3.3E-45 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 8.6E-65 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 SUPERFAMILY SSF56784 1 158 8.41E-40 T 13-10-2018 IPR036412 HAD-like superfamily CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Gene3D G3DSA:3.40.50.1000 1 163 3.2E-47 T 13-10-2018 IPR023214 HAD superfamily CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 146 9.7E-25 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Gene3D G3DSA:3.30.230.40 255 355 1.6E-36 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 51.285 T 13-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CS348_09280 b129d959023f20cb8ba60f1e4fcb3b80 355 SUPERFAMILY SSF54211 252 342 1.39E-32 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_05380 289885b606932b9b996f3f996c12811a 236 Gene3D G3DSA:3.90.550.10 2 236 5.1E-80 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_05380 289885b606932b9b996f3f996c12811a 236 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 227 1.3E-79 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CS348_05380 289885b606932b9b996f3f996c12811a 236 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 227 44.894 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CS348_05380 289885b606932b9b996f3f996c12811a 236 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 102 109 - T 13-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CS348_05380 289885b606932b9b996f3f996c12811a 236 SUPERFAMILY SSF53448 8 227 8.88E-61 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_05380 289885b606932b9b996f3f996c12811a 236 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 229 8.9E-92 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CS348_16270 c2ee18a3de3e6a0f56bed250ca7f887a 320 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 21 295 2.6E-17 T 13-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CS348_09125 dc42842f7fe86de37772df727cc054a1 157 PIRSF PIRSF037599 1 152 5.2E-72 T 13-10-2018 IPR033715 GDP-mannose mannosyl hydrolase GO:0008727 CS348_09125 dc42842f7fe86de37772df727cc054a1 157 Pfam PF00293 NUDIX domain 23 145 3.6E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_09125 dc42842f7fe86de37772df727cc054a1 157 ProSitePatterns PS00893 Nudix box signature. 50 71 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_09125 dc42842f7fe86de37772df727cc054a1 157 SUPERFAMILY SSF55811 2 147 1.49E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_09125 dc42842f7fe86de37772df727cc054a1 157 Gene3D G3DSA:3.90.79.10 1 152 9.0E-45 T 13-10-2018 CS348_09125 dc42842f7fe86de37772df727cc054a1 157 Hamap MF_00941 GDP-mannose mannosyl hydrolase [gmm]. 1 155 47.739 T 13-10-2018 IPR028613 GDP-mannose mannosyl hydrolase, Enterobacteria GO:0000287|GO:0008727|GO:0030145 CS348_03380 8072cc55e9dca6a06a209ab749d209ca 245 Pfam PF01553 Acyltransferase 54 180 5.7E-32 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_03380 8072cc55e9dca6a06a209ab749d209ca 245 SUPERFAMILY SSF69593 2 241 2.75E-61 T 13-10-2018 CS348_03380 8072cc55e9dca6a06a209ab749d209ca 245 SMART SM00563 67 182 1.4E-39 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_03380 8072cc55e9dca6a06a209ab749d209ca 245 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 3.4E-51 T 13-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 CS348_24045 6deddf626a1667f96e278e1d40fdc16e 316 SUPERFAMILY SSF144083 251 314 1.31E-20 T 13-10-2018 CS348_24045 6deddf626a1667f96e278e1d40fdc16e 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 316 4.6E-114 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 CS348_24045 6deddf626a1667f96e278e1d40fdc16e 316 Pfam PF01544 CorA-like Mg2+ transporter protein 26 312 3.4E-56 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CS348_24045 6deddf626a1667f96e278e1d40fdc16e 316 SUPERFAMILY SSF143865 1 255 1.31E-37 T 13-10-2018 CS348_24045 6deddf626a1667f96e278e1d40fdc16e 316 Gene3D G3DSA:1.20.58.340 240 316 2.3E-25 T 13-10-2018 CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 SUPERFAMILY SSF52317 3 195 7.18E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 13-10-2018 CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 13-10-2018 CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 Pfam PF00117 Glutamine amidotransferase class-I 36 194 1.6E-18 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 PIRSF PIRSF000495 1 196 1.3E-62 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.24 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 1.9E-73 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CS348_09275 2fa1d16b500d8b12d686875d00f79ad6 196 Gene3D G3DSA:3.40.50.880 1 196 1.9E-67 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 SUPERFAMILY SSF53067 5 254 1.11E-95 T 13-10-2018 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 Hamap MF_00186 Glycerol kinase [glpK]. 4 498 60.342 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 6 253 4.5E-93 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 Gene3D G3DSA:3.30.420.40 2 254 2.8E-117 T 13-10-2018 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 5 497 2.7E-230 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 262 451 2.0E-61 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 Gene3D G3DSA:3.30.420.40 255 501 6.0E-96 T 13-10-2018 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 SUPERFAMILY SSF53067 256 498 1.58E-87 T 13-10-2018 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 136 148 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 363 383 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_23155 8bf6f84041bdd4c0bc08eab5ca23bae5 502 PIRSF PIRSF000538 4 502 3.3E-178 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_06040 b80c3e609ac80fab5f2816a347b94a0b 143 SUPERFAMILY SSF69118 8 143 2.88E-43 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CS348_06040 b80c3e609ac80fab5f2816a347b94a0b 143 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 30 77 1.2E-17 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CS348_06040 b80c3e609ac80fab5f2816a347b94a0b 143 Gene3D G3DSA:1.20.1290.10 3 143 6.5E-47 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CS348_06040 b80c3e609ac80fab5f2816a347b94a0b 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 13 94 6.3E-21 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CS348_17935 a7c2dce10c2ff34d22b8aa674aa75c8c 109 Gene3D G3DSA:3.30.1310.10 1 109 1.2E-48 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CS348_17935 a7c2dce10c2ff34d22b8aa674aa75c8c 109 SUPERFAMILY SSF82607 11 103 1.44E-36 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CS348_17935 a7c2dce10c2ff34d22b8aa674aa75c8c 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 1.3E-42 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CS348_17935 a7c2dce10c2ff34d22b8aa674aa75c8c 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 1.8E-35 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CS348_17935 a7c2dce10c2ff34d22b8aa674aa75c8c 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.604 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CS348_17935 a7c2dce10c2ff34d22b8aa674aa75c8c 109 PIRSF PIRSF004555 3 109 1.8E-39 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CS348_14105 6a61e8aad8f672945208c39549bd3f04 347 Gene3D G3DSA:2.120.10.10 212 346 5.0E-6 T 13-10-2018 CS348_14105 6a61e8aad8f672945208c39549bd3f04 347 Gene3D G3DSA:2.120.10.10 15 194 5.1E-14 T 13-10-2018 CS348_14105 6a61e8aad8f672945208c39549bd3f04 347 Pfam PF13088 BNR repeat-like domain 33 330 4.4E-83 T 13-10-2018 IPR011040 Sialidase KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CS348_14105 6a61e8aad8f672945208c39549bd3f04 347 SUPERFAMILY SSF50939 9 344 2.94E-56 T 13-10-2018 IPR036278 Sialidase superfamily KEGG: 00511+3.2.1.18|KEGG: 00600+3.2.1.18|Reactome: R-HSA-1660662|Reactome: R-HSA-4085001 CS348_00795 857119b3501be8c8daa9e5793540368e 616 SUPERFAMILY SSF46785 489 547 2.61E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00795 857119b3501be8c8daa9e5793540368e 616 SUPERFAMILY SSF50465 275 351 3.96E-6 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CS348_00795 857119b3501be8c8daa9e5793540368e 616 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 608 5.7E-251 T 13-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CS348_00795 857119b3501be8c8daa9e5793540368e 616 Pfam PF09106 Elongation factor SelB, winged helix 425 481 6.2E-16 T 13-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CS348_00795 857119b3501be8c8daa9e5793540368e 616 Pfam PF03144 Elongation factor Tu domain 2 189 256 9.5E-9 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_00795 857119b3501be8c8daa9e5793540368e 616 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_00795 857119b3501be8c8daa9e5793540368e 616 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_00795 857119b3501be8c8daa9e5793540368e 616 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_00795 857119b3501be8c8daa9e5793540368e 616 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.3E-7 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_00795 857119b3501be8c8daa9e5793540368e 616 Gene3D G3DSA:1.10.10.10 548 608 4.8E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00795 857119b3501be8c8daa9e5793540368e 616 SUPERFAMILY SSF50447 175 293 8.44E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_00795 857119b3501be8c8daa9e5793540368e 616 Pfam PF00009 Elongation factor Tu GTP binding domain 2 157 1.6E-30 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_00795 857119b3501be8c8daa9e5793540368e 616 Gene3D G3DSA:2.40.30.10 171 260 1.8E-23 T 13-10-2018 CS348_00795 857119b3501be8c8daa9e5793540368e 616 Gene3D G3DSA:3.40.50.300 1 167 1.0E-43 T 13-10-2018 CS348_00795 857119b3501be8c8daa9e5793540368e 616 SUPERFAMILY SSF46785 552 608 4.82E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00795 857119b3501be8c8daa9e5793540368e 616 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_00795 857119b3501be8c8daa9e5793540368e 616 Pfam PF09107 Elongation factor SelB, winged helix 561 606 3.5E-19 T 13-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 CS348_00795 857119b3501be8c8daa9e5793540368e 616 SUPERFAMILY SSF46785 418 485 2.45E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00795 857119b3501be8c8daa9e5793540368e 616 Gene3D G3DSA:1.10.10.10 488 547 3.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00795 857119b3501be8c8daa9e5793540368e 616 SUPERFAMILY SSF52540 2 163 7.83E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23815 690dbea1bcd1524403a48b46dddb1ad2 302 Pfam PF01553 Acyltransferase 75 213 7.1E-14 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_23815 690dbea1bcd1524403a48b46dddb1ad2 302 SMART SM00563 88 215 2.2E-18 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_23815 690dbea1bcd1524403a48b46dddb1ad2 302 SUPERFAMILY SSF69593 50 287 1.29E-27 T 13-10-2018 CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 SUPERFAMILY SSF54534 49 127 1.16E-18 T 13-10-2018 CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 Pfam PF14760 Rnk N-terminus 4 42 3.0E-11 T 13-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 Gene3D G3DSA:1.10.286.20 1 44 5.9E-29 T 13-10-2018 CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 Gene3D G3DSA:3.10.50.30 45 135 1.4E-31 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 PIRSF PIRSF006092 30 128 2.2E-24 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.601 T 13-10-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0070063 CS348_17160 e95e868f84614c0dbd1fb836b5d1b4fd 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 126 5.3E-21 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CS348_24620 beb5f78bfda09895bbf2aa1b797c6e28 246 Pfam PF00589 Phage integrase family 44 216 5.2E-28 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_24620 beb5f78bfda09895bbf2aa1b797c6e28 246 SUPERFAMILY SSF56349 47 217 1.44E-26 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_24620 beb5f78bfda09895bbf2aa1b797c6e28 246 Gene3D G3DSA:1.10.443.10 38 226 3.5E-25 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_24620 beb5f78bfda09895bbf2aa1b797c6e28 246 PIRSF PIRSF004576 1 241 6.0E-113 T 13-10-2018 IPR016423 Resolvase, Rsv CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 771 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Gene3D G3DSA:1.10.8.60 491 584 6.4E-34 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Gene3D G3DSA:2.30.130.40 1 118 2.7E-38 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 1.5E-17 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 SUPERFAMILY SSF54211 595 771 1.1E-59 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 SMART SM00382 348 492 3.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 1.4E-97 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 SUPERFAMILY SSF88697 10 201 5.22E-52 T 13-10-2018 IPR015947 PUA-like superfamily CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Gene3D G3DSA:3.40.50.300 313 490 1.6E-61 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Gene3D G3DSA:3.30.230.10 585 772 1.0E-87 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Gene3D G3DSA:1.20.58.1480 120 245 8.7E-49 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 SUPERFAMILY SSF52540 313 587 5.3E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 1.8E-42 T 13-10-2018 IPR003111 Lon, substrate-binding domain CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 PIRSF PIRSF001174 1 775 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 7.1E-57 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 7.1E-57 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 7.1E-57 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 7.1E-57 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 7.1E-57 T 13-10-2018 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.372 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 CS348_18115 a435afb9f4748f33bbb28b06a8e97347 784 SMART SM00464 10 202 2.8E-87 T 13-10-2018 IPR003111 Lon, substrate-binding domain CS348_12155 0d5956bb0db7eb217a167908530091b4 294 Pfam PF13247 4Fe-4S dicluster domain 92 188 1.3E-25 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_12155 0d5956bb0db7eb217a167908530091b4 294 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 290 5.9E-144 T 13-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 CS348_12155 0d5956bb0db7eb217a167908530091b4 294 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 3.8E-19 T 13-10-2018 IPR015246 Formate dehydrogenase, transmembrane CS348_12155 0d5956bb0db7eb217a167908530091b4 294 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_12155 0d5956bb0db7eb217a167908530091b4 294 Gene3D G3DSA:1.20.5.480 247 294 5.6E-29 T 13-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily CS348_12155 0d5956bb0db7eb217a167908530091b4 294 Gene3D G3DSA:3.30.70.20 17 162 1.8E-105 T 13-10-2018 CS348_12155 0d5956bb0db7eb217a167908530091b4 294 Gene3D G3DSA:3.30.70.20 28 227 1.8E-105 T 13-10-2018 CS348_12155 0d5956bb0db7eb217a167908530091b4 294 SUPERFAMILY SSF81597 246 290 1.15E-13 T 13-10-2018 CS348_12155 0d5956bb0db7eb217a167908530091b4 294 SUPERFAMILY SSF54862 26 258 1.47E-70 T 13-10-2018 CS348_12155 0d5956bb0db7eb217a167908530091b4 294 PIRSF PIRSF036298 1 294 3.0E-161 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 CS348_08650 69589469bb2c13444fede0ece2916231 455 Pfam PF03313 Serine dehydratase alpha chain 184 445 1.6E-88 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CS348_08650 69589469bb2c13444fede0ece2916231 455 Gene3D G3DSA:3.30.1330.90 10 156 3.6E-37 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_08650 69589469bb2c13444fede0ece2916231 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 446 1.5E-164 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_08650 69589469bb2c13444fede0ece2916231 455 Pfam PF03315 Serine dehydratase beta chain 3 154 3.2E-40 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_08650 69589469bb2c13444fede0ece2916231 455 SUPERFAMILY SSF143548 16 154 1.78E-30 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 SUPERFAMILY SSF48179 206 299 1.43E-28 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 6.5E-119 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 PIRSF PIRSF000124 4 419 1.2E-76 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 3.9E-27 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 1.5E-17 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 SUPERFAMILY SSF51735 5 198 4.6E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 Gene3D G3DSA:3.40.50.720 205 420 1.7E-59 T 13-10-2018 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 81.38 T 13-10-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 SMART SM00984 324 420 2.7E-23 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 Gene3D G3DSA:3.40.50.720 1 202 1.4E-63 T 13-10-2018 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 PIRSF PIRSF500136 1 420 2.2E-145 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 SUPERFAMILY SSF52413 311 419 3.79E-25 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CS348_24190 8eb45d649d7f8560a2f24ad556b09d4d 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 186 2.5E-57 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 48 348 37.449 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 81 342 4.1E-99 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 Pfam PF03193 RsgA GTPase 108 284 1.3E-55 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 Gene3D G3DSA:3.40.50.300 111 283 2.4E-50 T 13-10-2018 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 Gene3D G3DSA:1.10.40.50 284 358 6.1E-30 T 13-10-2018 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 Gene3D G3DSA:2.40.50.140 43 110 1.4E-27 T 13-10-2018 CS348_21875 49dfd4c43bc6a755a828bfe3b9370fdd 358 SUPERFAMILY SSF52540 122 348 1.17E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09975 33df11e11396a32965cbf72199a06019 222 SUPERFAMILY SSF161098 13 203 8.63E-52 T 13-10-2018 IPR035906 MetI-like superfamily CS348_09975 33df11e11396a32965cbf72199a06019 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.7E-34 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_09975 33df11e11396a32965cbf72199a06019 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 5.1E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_09975 33df11e11396a32965cbf72199a06019 222 Gene3D G3DSA:1.10.3720.10 4 219 1.9E-63 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11915 e3461d49eb7e13291a047e3bb3d07bd3 372 SUPERFAMILY SSF101821 72 180 1.4E-26 T 13-10-2018 CS348_11915 e3461d49eb7e13291a047e3bb3d07bd3 372 PIRSF PIRSF001123 3 358 2.2E-93 T 13-10-2018 IPR008007 Peptidase M42 CS348_11915 e3461d49eb7e13291a047e3bb3d07bd3 372 Gene3D G3DSA:3.40.630.10 11 346 4.4E-103 T 13-10-2018 CS348_11915 e3461d49eb7e13291a047e3bb3d07bd3 372 Gene3D G3DSA:2.40.30.40 71 163 4.4E-103 T 13-10-2018 IPR023367 Peptidase M42, domain 2 CS348_11915 e3461d49eb7e13291a047e3bb3d07bd3 372 SUPERFAMILY SSF53187 6 351 7.8E-54 T 13-10-2018 CS348_11915 e3461d49eb7e13291a047e3bb3d07bd3 372 Pfam PF05343 M42 glutamyl aminopeptidase 46 346 1.9E-93 T 13-10-2018 IPR008007 Peptidase M42 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 Gene3D G3DSA:3.30.390.30 338 450 7.9E-49 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 1.9E-219 T 13-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 Gene3D G3DSA:3.50.50.60 144 261 5.6E-126 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PIRSF PIRSF000350 1 447 3.7E-87 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 SUPERFAMILY SSF55424 336 450 1.01E-36 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 SUPERFAMILY SSF51905 1 365 4.03E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 7.2E-67 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 318 3.6E-70 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 3.7E-35 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 7.7E-29 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 7.7E-29 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 7.7E-29 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 7.7E-29 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 7.7E-29 T 13-10-2018 CS348_01250 f6b73fc16d163de5264c242ba1b75dbf 450 Gene3D G3DSA:3.50.50.60 5 318 5.6E-126 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_03030 4b446da4ea4f819ec766c71af763009d 436 Pfam PF03313 Serine dehydratase alpha chain 179 428 1.3E-45 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CS348_03030 4b446da4ea4f819ec766c71af763009d 436 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 9 433 34.662 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CS348_03030 4b446da4ea4f819ec766c71af763009d 436 PIRSF PIRSF006054 5 435 7.2E-173 T 13-10-2018 IPR021144 Uncharacterised protein family UPF0597 CS348_18950 bbc733af3a980b7e4fd1856be1653a73 164 SUPERFAMILY SSF160719 37 151 4.18E-9 T 13-10-2018 CS348_18950 bbc733af3a980b7e4fd1856be1653a73 164 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 14 155 6.2E-18 T 13-10-2018 IPR017737 Type VI secretion system, lysozyme-related protein CS348_18950 bbc733af3a980b7e4fd1856be1653a73 164 Pfam PF04965 Gene 25-like lysozyme 39 143 1.1E-22 T 13-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD CS348_17570 64ae21c2f2033bdc7334c0babfc3c3e3 179 SUPERFAMILY SSF53955 9 173 7.67E-31 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_17570 64ae21c2f2033bdc7334c0babfc3c3e3 179 Gene3D G3DSA:1.10.530.40 2 177 1.4E-34 T 13-10-2018 CS348_17570 64ae21c2f2033bdc7334c0babfc3c3e3 179 Pfam PF00959 Phage lysozyme 50 168 2.7E-23 T 13-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 CS348_02515 3b1b388ed7a17a5f8ec17038a97fb457 212 Gene3D G3DSA:3.40.30.10 11 202 6.0E-80 T 13-10-2018 CS348_02515 3b1b388ed7a17a5f8ec17038a97fb457 212 SUPERFAMILY SSF47616 82 208 9.24E-28 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_02515 3b1b388ed7a17a5f8ec17038a97fb457 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 5.6E-20 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_02515 3b1b388ed7a17a5f8ec17038a97fb457 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 194 2.8E-13 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CS348_02515 3b1b388ed7a17a5f8ec17038a97fb457 212 SUPERFAMILY SSF52833 7 90 2.76E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_02515 3b1b388ed7a17a5f8ec17038a97fb457 212 Gene3D G3DSA:1.20.1050.10 89 193 6.0E-80 T 13-10-2018 CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 1.1E-205 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 SUPERFAMILY SSF51161 255 439 9.61E-53 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Pfam PF12804 MobA-like NTP transferase domain 8 122 6.1E-21 T 13-10-2018 IPR025877 MobA-like NTP transferase CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 6.2E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 353 382 0.003 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 269 300 2.1E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Gene3D G3DSA:3.90.550.10 1 227 8.8E-72 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Gene3D G3DSA:2.160.10.10 228 456 7.5E-73 T 13-10-2018 CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 SUPERFAMILY SSF53448 6 252 3.5E-67 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 43.014 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 CS348_24495 5f2cd052bdc9aba6e9c36e599e44f158 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Pfam PF00117 Glutamine amidotransferase class-I 12 199 5.2E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Pfam PF00958 GMP synthase C terminal domain 433 524 6.3E-44 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 56.698 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 212 525 7.8E-157 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 SUPERFAMILY SSF52402 197 420 1.26E-59 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Gene3D G3DSA:3.30.300.10 406 525 1.3E-51 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 SUPERFAMILY SSF54810 405 525 1.44E-51 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 9.4E-7 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 9.4E-7 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 9.4E-7 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 SUPERFAMILY SSF52317 5 204 3.16E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 2.2E-84 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 2.6E-6 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 2.6E-6 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 2.6E-6 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 1.1E-7 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.1E-7 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.1E-7 T 13-10-2018 CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Pfam PF02540 NAD synthase 223 258 1.1E-6 T 13-10-2018 IPR022310 NAD/GMP synthase CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Gene3D G3DSA:3.40.50.620 209 405 9.5E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_07015 07935b5bd8ee07e804dc35aa6ee39368 525 Gene3D G3DSA:3.40.50.880 9 206 7.2E-59 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 Pfam PF12833 Helix-turn-helix domain 183 259 1.1E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 228 243 2.4E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 243 259 2.4E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 213 255 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 SUPERFAMILY SSF46689 212 259 2.37E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 SMART SM00342 177 259 6.5E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 SUPERFAMILY SSF51215 14 146 6.67E-7 T 13-10-2018 IPR037923 Transcription regulator HTH-like CS348_15085 0f610e204bf36e4e668d15cd2cb2b3bd 259 Gene3D G3DSA:1.10.10.60 158 259 2.7E-28 T 13-10-2018 CS348_14530 0d0805899845741cec396e0d710edf30 553 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CS348_14530 0d0805899845741cec396e0d710edf30 553 SUPERFAMILY SSF64518 136 551 3.79E-50 T 13-10-2018 CS348_14530 0d0805899845741cec396e0d710edf30 553 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 3 355 2.9E-82 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 498 552 5.9E-8 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 472 493 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 447 466 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 409 426 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 260 282 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 519 543 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 PRINTS PR01005 Flagellar hook-associated protein signature 361 383 3.5E-153 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 CS348_14530 0d0805899845741cec396e0d710edf30 553 Pfam PF00460 Flagella basal body rod protein 5 35 1.8E-9 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 679 4.6E-256 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Pfam PF02503 Polyphosphate kinase middle domain 119 319 1.0E-41 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 SUPERFAMILY SSF56024 320 499 1.1E-56 T 13-10-2018 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 PIRSF PIRSF015589 1 687 4.0E-241 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Gene3D G3DSA:3.30.870.10 316 501 5.0E-77 T 13-10-2018 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Pfam PF13090 Polyphosphate kinase C-terminal domain 333 678 1.6E-143 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Gene3D G3DSA:3.30.1840.10 110 307 4.5E-76 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Gene3D G3DSA:3.30.870.10 502 688 1.0E-71 T 13-10-2018 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 3.6E-31 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 SUPERFAMILY SSF143724 107 313 1.24E-58 T 13-10-2018 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 SUPERFAMILY SSF140356 3 105 7.85E-34 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 683 27.28 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 SUPERFAMILY SSF56024 503 684 1.95E-68 T 13-10-2018 CS348_07065 a1940b7016d85284a1627ef4f94e7476 688 Gene3D G3DSA:1.20.58.310 9 109 2.7E-38 T 13-10-2018 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 SUPERFAMILY SSF55174 1 55 4.56E-12 T 13-10-2018 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 3.0E-60 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 SUPERFAMILY SSF55120 61 227 1.76E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 Gene3D G3DSA:3.10.290.10 1 62 2.5E-21 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 Gene3D G3DSA:3.30.70.580 63 227 2.1E-61 T 13-10-2018 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 Pfam PF00849 RNA pseudouridylate synthase 62 192 8.6E-18 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 Pfam PF01479 S4 domain 1 44 1.9E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 SMART SM00363 1 60 5.8E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_08495 bd67143e678281b10a58276a4418e6b7 231 Gene3D G3DSA:3.30.70.1560 128 209 2.1E-61 T 13-10-2018 CS348_19190 b4494adebbfdd241c0571f49329a49fe 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 189 206 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 CS348_19190 b4494adebbfdd241c0571f49329a49fe 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 23 243 2.2E-80 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CS348_19190 b4494adebbfdd241c0571f49329a49fe 252 SUPERFAMILY SSF64005 18 239 3.14E-87 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CS348_19190 b4494adebbfdd241c0571f49329a49fe 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 16 244 39.81 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CS348_19190 b4494adebbfdd241c0571f49329a49fe 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 18 243 2.1E-104 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CS348_19190 b4494adebbfdd241c0571f49329a49fe 252 Gene3D G3DSA:3.40.1180.10 16 252 1.5E-93 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CS348_11925 a864f6798bc65c81787e0f2cd08918df 326 SUPERFAMILY SSF51161 4 316 2.07E-63 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_11925 a864f6798bc65c81787e0f2cd08918df 326 Gene3D G3DSA:2.160.10.10 152 303 6.1E-8 T 13-10-2018 CS348_11925 a864f6798bc65c81787e0f2cd08918df 326 Gene3D G3DSA:2.160.10.10 48 134 1.5E-7 T 13-10-2018 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 SUPERFAMILY SSF81273 93 136 2.28E-12 T 13-10-2018 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 Pfam PF00816 H-NS histone family 32 127 1.6E-20 T 13-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 Gene3D G3DSA:4.10.430.10 91 137 3.0E-26 T 13-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 SMART SM00528 87 135 2.7E-25 T 13-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 PIRSF PIRSF002096 1 135 3.9E-57 T 13-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 SUPERFAMILY SSF81273 2 58 5.1E-18 T 13-10-2018 CS348_11090 f67943ca4237c6d0d85e750eacd77bae 137 Gene3D G3DSA:1.10.287.1050 1 83 1.9E-37 T 13-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 SUPERFAMILY SSF53383 481 951 6.54E-101 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 SUPERFAMILY SSF53383 17 442 8.87E-98 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 956 25.704 T 13-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 Gene3D G3DSA:3.40.640.10 96 355 2.9E-100 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 Gene3D G3DSA:3.40.640.10 525 759 5.0E-61 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 Pfam PF02347 Glycine cleavage system P-protein 16 440 5.1E-192 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 Pfam PF02347 Glycine cleavage system P-protein 481 739 9.3E-9 T 13-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 Gene3D G3DSA:3.90.1150.10 767 898 6.9E-42 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_04700 6817f8728af106cd84f2559df9eac3d8 957 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 950 0.0 T 13-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 CS348_11145 bfdecdd175a42572aa4318ea61332ac8 109 Gene3D G3DSA:3.10.450.140 9 109 2.7E-43 T 13-10-2018 IPR036763 Putative dsDNA mimic superfamily CS348_11145 bfdecdd175a42572aa4318ea61332ac8 109 PIRSF PIRSF004916 1 109 6.9E-57 T 13-10-2018 IPR007376 dsDNA mimic, putative CS348_11145 bfdecdd175a42572aa4318ea61332ac8 109 SUPERFAMILY SSF102816 3 109 1.44E-50 T 13-10-2018 IPR036763 Putative dsDNA mimic superfamily CS348_11145 bfdecdd175a42572aa4318ea61332ac8 109 Pfam PF04269 Protein of unknown function, DUF440 8 109 7.6E-47 T 13-10-2018 IPR007376 dsDNA mimic, putative CS348_11145 bfdecdd175a42572aa4318ea61332ac8 109 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 7 109 1.0E-53 T 13-10-2018 IPR007376 dsDNA mimic, putative CS348_11145 bfdecdd175a42572aa4318ea61332ac8 109 Hamap MF_00680 UPF0263 protein YciU [yciU]. 5 109 35.426 T 13-10-2018 IPR007376 dsDNA mimic, putative CS348_07840 07345546a10bee20935d8ada3b469983 473 PIRSF PIRSF006060 2 471 6.3E-76 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_07840 07345546a10bee20935d8ada3b469983 473 Pfam PF13520 Amino acid permease 28 446 5.0E-68 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_07840 07345546a10bee20935d8ada3b469983 473 Gene3D G3DSA:1.20.1740.10 15 469 8.6E-37 T 13-10-2018 CS348_07840 07345546a10bee20935d8ada3b469983 473 SUPERFAMILY SSF81665 102 434 5.75E-6 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 PIRSF PIRSF036687 1 859 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 3.1E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 854 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 SUPERFAMILY SSF52016 162 371 4.97E-73 T 13-10-2018 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Gene3D G3DSA:3.40.1060.10 385 681 5.6E-156 T 13-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 5.0E-68 T 13-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Gene3D G3DSA:3.30.499.10 683 865 2.0E-76 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Gene3D G3DSA:1.25.40.310 1 161 1.4E-74 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 SUPERFAMILY SSF74778 2 160 2.09E-69 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 ProSitePatterns PS00450 Aconitase family signature 1. 702 719 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 2.0E-99 T 13-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 SUPERFAMILY SSF53732 380 859 1.83E-150 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Gene3D G3DSA:3.30.499.10 402 529 5.6E-156 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CS348_19525 354acc38da6ac015749ed5f8ed1aa622 865 Gene3D G3DSA:3.20.19.10 162 361 3.5E-83 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 Gene3D G3DSA:3.40.630.10 367 485 3.6E-24 T 13-10-2018 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 SUPERFAMILY SSF53187 10 481 3.55E-64 T 13-10-2018 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 Pfam PF01546 Peptidase family M20/M25/M40 73 480 1.7E-20 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 1.0E-102 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 PIRSF PIRSF016599 1 485 7.4E-212 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 Gene3D G3DSA:3.40.630.10 1 233 5.4E-64 T 13-10-2018 CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 Pfam PF07687 Peptidase dimerisation domain 202 293 8.3E-8 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CS348_18755 5c63a95aca44f6a6c9afe5a23727358b 485 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 5.7E-184 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82866 296 497 8.76E-47 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1034 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.9E-108 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82693 39 132 2.96E-26 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:1.20.1640.10 516 1024 0.0 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:3.30.70.1440 675 864 0.0 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82714 182 272 1.09E-20 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82693 138 330 4.36E-24 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:3.30.2090.10 724 812 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:3.30.70.1430 38 820 0.0 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82693 566 672 2.88E-28 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82866 807 1030 4.45E-43 T 13-10-2018 CS348_07175 5c62db49625c64786c8b283a73d87343 1037 SUPERFAMILY SSF82714 723 809 1.14E-23 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_07175 5c62db49625c64786c8b283a73d87343 1037 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 13-10-2018 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 SUPERFAMILY SSF46894 146 241 3.12E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 Pfam PF00072 Response regulator receiver domain 25 134 5.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 SMART SM00862 165 240 1.7E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 Gene3D G3DSA:1.10.10.10 142 247 3.1E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 Pfam PF00486 Transcriptional regulatory protein, C terminal 165 240 1.3E-26 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 Gene3D G3DSA:3.40.50.2300 9 141 6.3E-39 T 13-10-2018 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 SUPERFAMILY SSF52172 16 144 5.55E-41 T 13-10-2018 IPR011006 CheY-like superfamily CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 SMART SM00448 23 133 3.2E-44 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_15015 3b7bed0c1aee44817cf28943dd1d13a5 248 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 25 240 3.0E-105 T 13-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SMART SM00091 155 221 3.9E-7 T 13-10-2018 IPR000014 PAS domain CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Gene3D G3DSA:1.20.120.160 654 778 2.9E-30 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SMART SM00387 394 507 3.9E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Gene3D G3DSA:3.40.50.2300 508 650 4.4E-31 T 13-10-2018 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SMART SM00448 526 639 4.3E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Pfam PF00072 Response regulator receiver domain 528 639 7.4E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Gene3D G3DSA:3.30.450.20 142 272 5.3E-20 T 13-10-2018 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Gene3D G3DSA:1.10.287.130 273 348 2.7E-20 T 13-10-2018 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SUPERFAMILY SSF47226 663 773 6.41E-28 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 PIRSF PIRSF003182 1 778 0.0 T 13-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 346 2.4E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SMART SM00388 282 347 5.4E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 5.4E-14 T 13-10-2018 IPR000014 PAS domain CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 504 4.0E-30 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SUPERFAMILY SSF55874 336 503 1.83E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SUPERFAMILY SSF47384 269 347 3.73E-17 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SMART SM00073 675 772 2.3E-20 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Gene3D G3DSA:3.30.565.10 349 507 3.2E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Pfam PF00989 PAS fold 156 266 1.1E-17 T 13-10-2018 IPR013767 PAS fold GO:0006355 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Gene3D G3DSA:1.10.287.970 1 89 1.3E-41 T 13-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SUPERFAMILY SSF52172 526 645 2.28E-27 T 13-10-2018 IPR011006 CheY-like superfamily CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 1.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 1.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 1.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 1.1E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 Pfam PF01627 Hpt domain 686 758 8.2E-11 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_02590 cbec6e7445fcaf0b13bdba2520d01bd5 778 SUPERFAMILY SSF55785 140 267 1.12E-20 T 13-10-2018 IPR035965 PAS domain superfamily CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 8.8E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 8.8E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 8.8E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 8.8E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 8.8E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 8.8E-38 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 SUPERFAMILY SSF52313 6 235 1.44E-96 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 Gene3D G3DSA:3.40.50.10490 8 219 1.4E-94 T 13-10-2018 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 8.7E-109 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 Gene3D G3DSA:1.10.287.610 103 150 1.4E-94 T 13-10-2018 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 Pfam PF00318 Ribosomal protein S2 9 224 1.1E-94 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_19225 82fa117145fef8b6a3f2779d71fe197f 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.387 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18410 f96154ef78c053afd263f1d8465cc424 94 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 1.7E-34 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 CS348_18410 f96154ef78c053afd263f1d8465cc424 94 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 94 26.35 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 CS348_18410 f96154ef78c053afd263f1d8465cc424 94 Gene3D G3DSA:2.60.120.10 1 94 5.2E-34 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_18410 f96154ef78c053afd263f1d8465cc424 94 SUPERFAMILY SSF51182 1 94 8.13E-34 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Gene3D G3DSA:3.90.1150.10 441 630 6.1E-83 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Gene3D G3DSA:3.40.640.10 140 440 4.9E-97 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 SUPERFAMILY SSF55904 610 754 2.22E-36 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 615 743 2.1E-43 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 PIRSF PIRSF009393 1 755 5.0E-271 T 13-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Gene3D G3DSA:3.90.100.10 631 755 9.6E-50 T 13-10-2018 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 SUPERFAMILY SSF53383 140 607 2.16E-106 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Gene3D G3DSA:3.40.50.2300 1 139 5.4E-60 T 13-10-2018 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 381 395 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 18 134 3.1E-24 T 13-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 CS348_22190 ac5d9c56ffc0989b46d4ec2c6f3f0f1d 755 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 140 590 6.8E-190 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 96 3.9E-30 T 13-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 SUPERFAMILY SSF54893 2 100 2.75E-35 T 13-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 4.0E-48 T 13-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 152 5.5E-71 T 13-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 102 147 7.6E-18 T 13-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 SUPERFAMILY SSF57825 101 150 4.58E-15 T 13-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 Gene3D G3DSA:3.30.70.140 1 100 1.4E-37 T 13-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 Gene3D G3DSA:2.30.30.20 101 153 2.4E-26 T 13-10-2018 CS348_21310 4b497d0ae05b24654afc0c1f93ebdac7 153 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.533 T 13-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 Gene3D G3DSA:3.40.50.300 33 280 1.1E-80 T 13-10-2018 CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 SUPERFAMILY SSF52540 43 270 8.22E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 SMART SM00382 53 242 1.4E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 Pfam PF00005 ABC transporter 45 192 4.8E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 Gene3D G3DSA:3.10.580.10 281 396 1.3E-10 T 13-10-2018 CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 Pfam PF00571 CBS domain 345 393 4.0E-7 T 13-10-2018 IPR000644 CBS domain CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 394 6.0E-193 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CS348_06005 94262199cd2ff9eea8389b0dba00e356 400 SUPERFAMILY SSF54631 276 393 4.17E-13 T 13-10-2018 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 ProSitePatterns PS01008 DnaA protein signature. 424 443 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 SUPERFAMILY SSF48295 362 465 4.45E-38 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Pfam PF11638 DnaA N-terminal domain 4 64 2.9E-20 T 13-10-2018 IPR024633 DnaA N-terminal domain CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 SMART SM00760 374 443 6.7E-45 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 SMART SM00382 163 365 4.3E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 465 34.446 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 SUPERFAMILY SSF52540 132 342 2.18E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Gene3D G3DSA:3.40.50.300 119 295 2.4E-50 T 13-10-2018 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 464 2.5E-187 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 375 443 1.2E-32 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Pfam PF00308 Bacterial dnaA protein 132 348 3.9E-99 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 164 184 1.2E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 196 210 1.2E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 262 289 1.2E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 424 443 1.2E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 228 242 1.2E-54 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Gene3D G3DSA:1.10.8.60 297 367 1.1E-23 T 13-10-2018 CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Gene3D G3DSA:3.30.300.180 2 107 3.3E-42 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily CS348_00005 fa7f53d4ce1ce5b7717ff2b82e717e94 466 Gene3D G3DSA:1.10.1750.10 373 466 1.1E-39 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CS348_04970 aaa660114d6d1c6f7cb5dd6808f9830f 231 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 231 157.053 T 13-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 CS348_04970 aaa660114d6d1c6f7cb5dd6808f9830f 231 SUPERFAMILY SSF52980 10 227 4.56E-78 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_04970 aaa660114d6d1c6f7cb5dd6808f9830f 231 Gene3D G3DSA:3.40.600.10 1 229 4.9E-56 T 13-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 CS348_04970 aaa660114d6d1c6f7cb5dd6808f9830f 231 SMART SM00927 59 157 5.6E-64 T 13-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 CS348_04970 aaa660114d6d1c6f7cb5dd6808f9830f 231 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 11 226 7.1E-112 T 13-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 CS348_04970 aaa660114d6d1c6f7cb5dd6808f9830f 231 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 3.5E-33 T 13-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 180 186 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 274 8.8E-99 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 SUPERFAMILY SSF53335 4 273 1.15E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 Gene3D G3DSA:1.10.8.10 1 84 1.4E-25 T 13-10-2018 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 275 46.487 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 271 7.6E-91 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 Gene3D G3DSA:3.40.50.150 85 276 2.4E-62 T 13-10-2018 CS348_10950 b48219ea9a6c7d40b4128e01e52b267b 277 Pfam PF13847 Methyltransferase domain 109 244 3.9E-22 T 13-10-2018 IPR025714 Methyltransferase domain CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 SUPERFAMILY SSF53850 91 296 3.8E-44 T 13-10-2018 CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 Pfam PF03466 LysR substrate binding domain 89 291 9.7E-43 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 Gene3D G3DSA:3.40.190.10 92 290 7.5E-66 T 13-10-2018 CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 7.6E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 SUPERFAMILY SSF46785 6 113 9.85E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 Gene3D G3DSA:1.10.10.10 1 88 4.6E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.3E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19015 0767289fe94db9c4a7100b2fc23f24f2 304 Gene3D G3DSA:3.40.190.10 164 264 7.5E-66 T 13-10-2018 CS348_12970 c9befcc1c0567504737ccda9e3b23c67 259 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 3 256 7.8E-91 T 13-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 CS348_12970 c9befcc1c0567504737ccda9e3b23c67 259 Pfam PF01311 Bacterial export proteins, family 1 10 242 1.7E-48 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_12970 c9befcc1c0567504737ccda9e3b23c67 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.6E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_12970 c9befcc1c0567504737ccda9e3b23c67 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 18 39 1.6E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_12970 c9befcc1c0567504737ccda9e3b23c67 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 1.6E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_12970 c9befcc1c0567504737ccda9e3b23c67 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.6E-26 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_18385 f46572f208a0a9486e6ab10238ff2d12 400 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 276 373 4.5E-25 T 13-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CS348_18385 f46572f208a0a9486e6ab10238ff2d12 400 Pfam PF00149 Calcineurin-like phosphoesterase 1 225 2.8E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_18385 f46572f208a0a9486e6ab10238ff2d12 400 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 253 6.7E-90 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 CS348_18385 f46572f208a0a9486e6ab10238ff2d12 400 Gene3D G3DSA:3.60.21.10 1 276 2.7E-96 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_18385 f46572f208a0a9486e6ab10238ff2d12 400 Gene3D G3DSA:3.30.160.720 277 340 2.5E-30 T 13-10-2018 CS348_18385 f46572f208a0a9486e6ab10238ff2d12 400 SUPERFAMILY SSF56300 1 335 1.25E-60 T 13-10-2018 CS348_13155 d91a9123cbe01be0203d6862708d8cab 250 Pfam PF13247 4Fe-4S dicluster domain 100 193 7.8E-30 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_13155 d91a9123cbe01be0203d6862708d8cab 250 SUPERFAMILY SSF54862 47 228 3.98E-66 T 13-10-2018 CS348_13155 d91a9123cbe01be0203d6862708d8cab 250 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 138 149 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_13155 d91a9123cbe01be0203d6862708d8cab 250 Gene3D G3DSA:3.30.70.20 41 235 2.2E-66 T 13-10-2018 CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 SUPERFAMILY SSF52540 1 241 4.21E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 SMART SM00930 259 336 5.4E-27 T 13-10-2018 IPR018449 NIL domain CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 Gene3D G3DSA:3.40.50.300 1 243 3.4E-76 T 13-10-2018 CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 Gene3D G3DSA:3.30.70.260 244 338 5.0E-26 T 13-10-2018 CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 Pfam PF09383 NIL domain 261 335 4.6E-19 T 13-10-2018 IPR018449 NIL domain CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 Pfam PF00005 ABC transporter 23 170 2.6E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 SUPERFAMILY SSF55021 249 337 2.86E-19 T 13-10-2018 CS348_17800 8314f4da60fdff0cac601e13790d0a3d 338 SMART SM00382 31 227 3.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_07145 96af163cf746de6003c8200f4660d8dd 237 Gene3D G3DSA:3.30.470.20 85 220 4.7E-91 T 13-10-2018 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 235 2.5E-84 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 SUPERFAMILY SSF56104 3 232 1.7E-75 T 13-10-2018 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 Pfam PF01259 SAICAR synthetase 7 230 2.9E-59 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 Gene3D G3DSA:3.30.200.20 7 231 4.7E-91 T 13-10-2018 CS348_07145 96af163cf746de6003c8200f4660d8dd 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.949 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 Gene3D G3DSA:3.30.1340.10 1 85 7.1E-36 T 13-10-2018 IPR035895 HPr-like superfamily CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.5E-20 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.5E-20 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.5E-20 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 2.6E-31 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 SUPERFAMILY SSF55594 1 82 1.44E-27 T 13-10-2018 IPR035895 HPr-like superfamily CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 1.2E-28 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_07410 30f33c2d8de065a355696e4e16a20b30 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 139 348 2.5E-71 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 13 426 7.5E-130 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 15 80 2.1E-4 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 SUPERFAMILY SSF52540 84 353 6.38E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 339 348 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 Gene3D G3DSA:3.40.50.12240 5 430 1.6E-130 T 13-10-2018 CS348_05550 911b309ef4ad51e150f25ebefeb6b91c 431 SMART SM00382 151 332 2.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 SUPERFAMILY SSF111369 51 165 2.22E-6 T 13-10-2018 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 ProSitePatterns PS00543 HlyD family secretion proteins signature. 375 397 - T 13-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 Gene3D G3DSA:2.40.30.170 41 340 2.0E-18 T 13-10-2018 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 260 281 1.3E-14 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 65 85 1.3E-14 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 294 318 1.3E-14 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 390 410 1.3E-14 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 Gene3D G3DSA:2.40.50.100 53 284 2.0E-18 T 13-10-2018 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 Gene3D G3DSA:1.10.287.470 87 242 2.0E-18 T 13-10-2018 CS348_24630 bdffb7d5d8422c00db9284ae364c7817 414 Pfam PF13437 HlyD family secretion protein 249 347 1.9E-12 T 13-10-2018 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 PRINTS PR00839 V8 serine protease family signature 69 86 2.2E-20 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 PRINTS PR00839 V8 serine protease family signature 178 191 2.2E-20 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 PRINTS PR00839 V8 serine protease family signature 44 61 2.2E-20 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 PRINTS PR00839 V8 serine protease family signature 212 228 2.2E-20 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 PRINTS PR00839 V8 serine protease family signature 232 244 2.2E-20 T 13-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 80 85 - T 13-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 SUPERFAMILY SSF50494 30 267 2.26E-30 T 13-10-2018 IPR009003 Peptidase S1, PA clan CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 Gene3D G3DSA:2.40.10.10 54 162 2.6E-26 T 13-10-2018 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 Gene3D G3DSA:2.40.10.10 41 242 2.6E-26 T 13-10-2018 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 Pfam PF00089 Trypsin 48 244 7.8E-9 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 CS348_12630 cdf179e57fe5aaf4fb88fc6ee22e3757 273 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 217 228 - T 13-10-2018 IPR033116 Serine proteases, trypsin family, serine active site CS348_17485 a0815425b7756447a0a1f35dd4f4ac6d 991 Pfam PF06791 Prophage tail length tape measure protein 253 386 2.9E-45 T 13-10-2018 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal CS348_17485 a0815425b7756447a0a1f35dd4f4ac6d 991 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C) 768 842 1.3E-23 T 13-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal CS348_17485 a0815425b7756447a0a1f35dd4f4ac6d 991 TIGRFAM TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family 613 952 3.2E-137 T 13-10-2018 IPR006431 Bacteriophage lambda, GpH, tail tape measure, C-terminal CS348_08605 41d16226dc167526c330eda3d6b394c1 562 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 214 551 2.2E-148 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 CS348_08605 41d16226dc167526c330eda3d6b394c1 562 Pfam PF02378 Phosphotransferase system, EIIC 232 495 3.0E-18 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_08605 41d16226dc167526c330eda3d6b394c1 562 Gene3D G3DSA:3.40.50.2300 97 203 3.8E-37 T 13-10-2018 CS348_08605 41d16226dc167526c330eda3d6b394c1 562 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 107 193 5.8E-18 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_08605 41d16226dc167526c330eda3d6b394c1 562 SUPERFAMILY SSF52794 4 88 1.59E-9 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_08605 41d16226dc167526c330eda3d6b394c1 562 SUPERFAMILY SSF52794 104 205 9.07E-35 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_08605 41d16226dc167526c330eda3d6b394c1 562 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 106 189 1.3E-38 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 CS348_06610 33ba59449a6e430727772ca291d2d136 216 Gene3D G3DSA:1.10.10.880 1 66 1.7E-30 T 13-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 CS348_06610 33ba59449a6e430727772ca291d2d136 216 PIRSF PIRSF016938 1 205 3.1E-35 T 13-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 CS348_06610 33ba59449a6e430727772ca291d2d136 216 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 7.8E-38 T 13-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 CS348_06610 33ba59449a6e430727772ca291d2d136 216 SUPERFAMILY SSF89069 1 66 1.57E-22 T 13-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 CS348_06610 33ba59449a6e430727772ca291d2d136 216 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 186 2.6E-25 T 13-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal CS348_13545 a875436d9542e184874ff9213e261ebc 196 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 117 5.5E-35 T 13-10-2018 IPR006531 Gp5 N-terminal CS348_13545 a875436d9542e184874ff9213e261ebc 196 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 8 194 9.9E-53 T 13-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 CS348_13545 a875436d9542e184874ff9213e261ebc 196 Gene3D G3DSA:2.40.50.230 3 88 1.1E-27 T 13-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily CS348_13545 a875436d9542e184874ff9213e261ebc 196 Gene3D G3DSA:2.60.220.40 89 176 3.6E-20 T 13-10-2018 CS348_13545 a875436d9542e184874ff9213e261ebc 196 SUPERFAMILY SSF69255 18 83 2.62E-5 T 13-10-2018 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 13-10-2018 IPR018080 Band 7/stomatin-like, conserved site CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 Pfam PF01145 SPFH domain / Band 7 family 22 203 1.5E-33 T 13-10-2018 IPR001107 Band 7 domain CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 PRINTS PR00721 Stomatin signature 73 94 2.5E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 PRINTS PR00721 Stomatin signature 128 151 2.5E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 PRINTS PR00721 Stomatin signature 108 125 2.5E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 PRINTS PR00721 Stomatin signature 171 192 2.5E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 PRINTS PR00721 Stomatin signature 152 170 2.5E-27 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 Gene3D G3DSA:3.30.479.30 46 178 2.2E-42 T 13-10-2018 CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 SUPERFAMILY SSF117892 49 183 3.27E-41 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CS348_17850 01901ba50102c8d615b0ce383e7b2b07 305 SMART SM00244 18 176 6.6E-60 T 13-10-2018 IPR001107 Band 7 domain CS348_19805 b5c3b5dab96a1cf5a108484c3d3d77d6 536 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 267 1.6E-10 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_19805 b5c3b5dab96a1cf5a108484c3d3d77d6 536 SUPERFAMILY SSF161098 286 527 4.97E-33 T 13-10-2018 IPR035906 MetI-like superfamily CS348_19805 b5c3b5dab96a1cf5a108484c3d3d77d6 536 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 1.9E-278 T 13-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 CS348_19805 b5c3b5dab96a1cf5a108484c3d3d77d6 536 Gene3D G3DSA:1.10.3720.10 285 535 4.6E-28 T 13-10-2018 IPR035906 MetI-like superfamily CS348_19805 b5c3b5dab96a1cf5a108484c3d3d77d6 536 Gene3D G3DSA:1.10.3720.10 11 268 3.5E-42 T 13-10-2018 IPR035906 MetI-like superfamily CS348_19805 b5c3b5dab96a1cf5a108484c3d3d77d6 536 SUPERFAMILY SSF161098 11 265 5.23E-42 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15250 4e6ed1b44c41d891b80ac90c962704c2 615 Pfam PF01471 Putative peptidoglycan binding domain 312 348 1.5E-7 T 13-10-2018 IPR002477 Peptidoglycan binding-like CS348_15250 4e6ed1b44c41d891b80ac90c962704c2 615 SUPERFAMILY SSF47090 313 356 3.22E-10 T 13-10-2018 IPR036365 PGBD-like superfamily CS348_15250 4e6ed1b44c41d891b80ac90c962704c2 615 SUPERFAMILY SSF141523 375 533 5.23E-20 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_15250 4e6ed1b44c41d891b80ac90c962704c2 615 Pfam PF03734 L,D-transpeptidase catalytic domain 377 543 1.3E-30 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CS348_15250 4e6ed1b44c41d891b80ac90c962704c2 615 Gene3D G3DSA:1.10.101.10 294 349 2.1E-8 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CS348_15250 4e6ed1b44c41d891b80ac90c962704c2 615 Gene3D G3DSA:2.40.440.10 350 545 3.0E-30 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_12215 354a69b4fc450282870992167217ff16 594 Gene3D G3DSA:1.10.10.760 445 482 2.1E-183 T 13-10-2018 CS348_12215 354a69b4fc450282870992167217ff16 594 PIRSF PIRSF006337 6 592 6.6E-228 T 13-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 CS348_12215 354a69b4fc450282870992167217ff16 594 Gene3D G3DSA:2.60.40.10 6 101 1.5E-26 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_12215 354a69b4fc450282870992167217ff16 594 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 20 559 1.0E-228 T 13-10-2018 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00500+3.2.1.141|MetaCyc: PWY-2661 CS348_12215 354a69b4fc450282870992167217ff16 594 SMART SM00642 112 453 1.1E-9 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_12215 354a69b4fc450282870992167217ff16 594 Gene3D G3DSA:2.60.40.1180 520 594 4.6E-40 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_12215 354a69b4fc450282870992167217ff16 594 SUPERFAMILY SSF51445 92 512 3.1E-113 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_12215 354a69b4fc450282870992167217ff16 594 Gene3D G3DSA:3.20.20.80 105 510 2.1E-183 T 13-10-2018 CS348_12215 354a69b4fc450282870992167217ff16 594 Pfam PF11941 Domain of unknown function (DUF3459) 501 585 5.5E-13 T 13-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) CS348_12215 354a69b4fc450282870992167217ff16 594 SUPERFAMILY SSF81296 9 95 1.02E-15 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_12215 354a69b4fc450282870992167217ff16 594 Pfam PF00128 Alpha amylase, catalytic domain 129 210 7.7E-14 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 SUPERFAMILY SSF50249 9 176 3.94E-43 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 SUPERFAMILY SSF52540 292 653 2.01E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 Gene3D G3DSA:3.40.50.300 457 630 6.1E-52 T 13-10-2018 CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 Pfam PF00270 DEAD/DEAH box helicase 272 433 1.4E-19 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 SUPERFAMILY SSF52540 206 453 2.3E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 Pfam PF17191 RecG wedge domain 14 171 2.3E-21 T 13-10-2018 IPR033454 RecG, wedge domain CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 Gene3D G3DSA:2.40.50.140 47 139 2.1E-14 T 13-10-2018 CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 SMART SM00490 505 589 2.9E-22 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 Pfam PF00271 Helicase conserved C-terminal domain 480 588 4.4E-17 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 SMART SM00487 265 459 6.4E-32 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 Gene3D G3DSA:3.40.50.300 208 450 7.4E-82 T 13-10-2018 CS348_00490 8c3573894c083e313d58a0b2c2a9ec76 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 664 2.1E-251 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 3 203 1.1E-85 T 13-10-2018 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 208 425 1.6E-112 T 13-10-2018 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 Gene3D G3DSA:3.90.850.10 218 429 9.4E-79 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 SUPERFAMILY SSF56529 2 209 1.96E-53 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 SUPERFAMILY SSF56529 218 425 2.09E-72 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 Gene3D G3DSA:3.90.850.10 1 211 1.1E-54 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 5 204 7.8E-39 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 CS348_14985 1115edd5090e2d69a0ccbd06d189a738 429 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 226 423 1.3E-60 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 CS348_17460 248878e6828526a96e6fee4ebac26886 1131 SUPERFAMILY SSF49265 633 799 3.84E-8 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 CS348_17460 248878e6828526a96e6fee4ebac26886 1131 Pfam PF13550 Putative phage tail protein 331 496 9.2E-39 T 13-10-2018 IPR032876 Tip attachment protein J CS348_17460 248878e6828526a96e6fee4ebac26886 1131 Pfam PF12421 Fibronectin type III protein 948 1089 1.7E-56 T 13-10-2018 IPR021034 Domain of unknown function, DUF3672 CS348_17460 248878e6828526a96e6fee4ebac26886 1131 Gene3D G3DSA:2.60.40.10 610 719 5.3E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_17460 248878e6828526a96e6fee4ebac26886 1131 SMART SM00060 617 700 0.022 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 CS348_17460 248878e6828526a96e6fee4ebac26886 1131 SMART SM00060 710 797 15.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 CS348_17460 248878e6828526a96e6fee4ebac26886 1131 Pfam PF09327 Domain of unknown function (DUF1983) 846 924 1.9E-25 T 13-10-2018 IPR015406 Domain of unknown function DUF1983 CS348_05575 b209c8dbadee0faf234a14f6da7cf8c5 86 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 4 80 1.5E-28 T 13-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 CS348_05575 b209c8dbadee0faf234a14f6da7cf8c5 86 Pfam PF01313 Bacterial export proteins, family 3 7 74 2.3E-23 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_05575 b209c8dbadee0faf234a14f6da7cf8c5 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 37 52 5.6E-27 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_05575 b209c8dbadee0faf234a14f6da7cf8c5 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 16 37 5.6E-27 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_05575 b209c8dbadee0faf234a14f6da7cf8c5 86 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 52 74 5.6E-27 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_13230 35bc944c4a61d166567981f40e0627e2 495 SUPERFAMILY SSF101960 41 492 2.75E-137 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CS348_13230 35bc944c4a61d166567981f40e0627e2 495 Pfam PF01458 Uncharacterized protein family (UPF0051) 234 466 7.0E-69 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CS348_13230 35bc944c4a61d166567981f40e0627e2 495 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 486 3.0E-194 T 13-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 CS348_05385 3d4dc200cfae7233bc6d61c40bca2f25 159 SUPERFAMILY SSF69765 1 156 3.66E-66 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CS348_05385 3d4dc200cfae7233bc6d61c40bca2f25 159 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CS348_05385 3d4dc200cfae7233bc6d61c40bca2f25 159 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 6.4E-72 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CS348_05385 3d4dc200cfae7233bc6d61c40bca2f25 159 Pfam PF02542 YgbB family 1 154 3.5E-66 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CS348_05385 3d4dc200cfae7233bc6d61c40bca2f25 159 Gene3D G3DSA:3.30.1330.50 1 159 1.3E-71 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CS348_05385 3d4dc200cfae7233bc6d61c40bca2f25 159 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.73 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Gene3D G3DSA:1.10.486.10 377 544 7.9E-139 T 13-10-2018 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 667 0.0 T 13-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Gene3D G3DSA:3.40.50.300 4 266 1.2E-102 T 13-10-2018 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Gene3D G3DSA:3.40.50.300 274 632 7.9E-139 T 13-10-2018 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 3.3E-70 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 SUPERFAMILY SSF52540 2 636 6.01E-162 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Gene3D G3DSA:1.10.10.160 108 181 1.2E-102 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 1.4E-72 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CS348_24235 7f05dbb8b2d84ac38c2e903f3ef2a5c9 674 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 41.078 T 13-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 2 291 2.4E-106 T 13-10-2018 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 ProSitePatterns PS01087 Radical activating enzymes signature. 13 34 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 PIRSF PIRSF000371 1 298 2.6E-92 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 Gene3D G3DSA:3.20.20.70 1 56 2.9E-15 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 Gene3D G3DSA:3.20.20.70 89 295 1.5E-56 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 Pfam PF04055 Radical SAM superfamily 19 230 9.5E-33 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 SUPERFAMILY SSF102114 101 265 3.34E-15 T 13-10-2018 CS348_16115 3823848529bc9dfc32752accb5c8e9df 299 Pfam PF13353 4Fe-4S single cluster domain 12 191 2.6E-10 T 13-10-2018 CS348_01965 aba550670298c63cb84a0083d7f68906 704 Gene3D G3DSA:2.40.30.10 304 411 3.4E-45 T 13-10-2018 CS348_01965 aba550670298c63cb84a0083d7f68906 704 SUPERFAMILY SSF54980 611 700 5.04E-27 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_01965 aba550670298c63cb84a0083d7f68906 704 Pfam PF00679 Elongation factor G C-terminus 611 696 1.5E-28 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CS348_01965 aba550670298c63cb84a0083d7f68906 704 SMART SM00838 611 698 9.3E-50 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CS348_01965 aba550670298c63cb84a0083d7f68906 704 Gene3D G3DSA:3.40.50.300 1 303 5.1E-117 T 13-10-2018 CS348_01965 aba550670298c63cb84a0083d7f68906 704 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 SUPERFAMILY SSF54980 411 488 3.02E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_01965 aba550670298c63cb84a0083d7f68906 704 Pfam PF03764 Elongation factor G, domain IV 486 609 4.8E-45 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 SUPERFAMILY SSF52540 6 288 3.48E-107 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01965 aba550670298c63cb84a0083d7f68906 704 SUPERFAMILY SSF54211 486 610 6.32E-40 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_01965 aba550670298c63cb84a0083d7f68906 704 SUPERFAMILY SSF50447 271 411 8.84E-36 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_01965 aba550670298c63cb84a0083d7f68906 704 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 1.7E-67 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 703 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_01965 aba550670298c63cb84a0083d7f68906 704 Pfam PF03144 Elongation factor Tu domain 2 331 398 4.0E-16 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 SMART SM00889 487 609 4.5E-72 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 Gene3D G3DSA:3.30.70.240 615 685 8.5E-84 T 13-10-2018 CS348_01965 aba550670298c63cb84a0083d7f68906 704 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 187 8.3E-33 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_01965 aba550670298c63cb84a0083d7f68906 704 Gene3D G3DSA:3.30.70.870 412 490 1.4E-31 T 13-10-2018 CS348_01965 aba550670298c63cb84a0083d7f68906 704 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_01965 aba550670298c63cb84a0083d7f68906 704 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 114.289 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_01965 aba550670298c63cb84a0083d7f68906 704 Gene3D G3DSA:3.30.230.10 491 698 8.5E-84 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_01965 aba550670298c63cb84a0083d7f68906 704 Pfam PF14492 Elongation Factor G, domain II 411 485 1.1E-33 T 13-10-2018 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 Gene3D G3DSA:2.60.40.10 32 155 4.5E-41 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 SUPERFAMILY SSF49584 157 250 1.44E-15 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 108 125 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 Gene3D G3DSA:2.60.40.10 158 253 6.3E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 154 3.6E-45 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 PRINTS PR00969 Pili chaperone signature 136 151 1.2E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 PRINTS PR00969 Pili chaperone signature 80 101 1.2E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 PRINTS PR00969 Pili chaperone signature 109 126 1.2E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 PRINTS PR00969 Pili chaperone signature 175 190 1.2E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 PRINTS PR00969 Pili chaperone signature 30 39 1.2E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 SUPERFAMILY SSF49354 24 154 7.06E-41 T 13-10-2018 IPR008962 PapD-like superfamily CS348_18695 c4deabf24de52375aea54a4f040e31ba 253 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 180 243 3.8E-15 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_22255 2223bf9a3541e937a707486f092a795a 229 Gene3D G3DSA:1.25.40.740 165 229 1.0E-37 T 13-10-2018 CS348_22255 2223bf9a3541e937a707486f092a795a 229 Pfam PF08238 Sel1 repeat 180 215 5.8E-5 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 Pfam PF08238 Sel1 repeat 119 134 18.0 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 Pfam PF08238 Sel1 repeat 143 173 2.0E-4 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 Pfam PF08238 Sel1 repeat 85 101 68.0 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 Pfam PF08238 Sel1 repeat 37 66 0.018 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 Gene3D G3DSA:1.25.40.10 20 162 1.3E-32 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_22255 2223bf9a3541e937a707486f092a795a 229 SUPERFAMILY SSF81901 85 215 9.29E-20 T 13-10-2018 CS348_22255 2223bf9a3541e937a707486f092a795a 229 SMART SM00671 67 101 34.0 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 SMART SM00671 102 137 130.0 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 SMART SM00671 142 177 1.1E-5 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 SMART SM00671 35 66 9.1 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 SMART SM00671 179 216 0.001 T 13-10-2018 IPR006597 Sel1-like repeat CS348_22255 2223bf9a3541e937a707486f092a795a 229 SUPERFAMILY SSF81901 25 100 2.09E-10 T 13-10-2018 CS348_14425 750658c867d7a220ec6f682cbf150512 180 Gene3D G3DSA:2.60.40.1090 23 180 1.2E-40 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_14425 750658c867d7a220ec6f682cbf150512 180 SUPERFAMILY SSF49401 26 180 1.49E-31 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_14425 750658c867d7a220ec6f682cbf150512 180 Pfam PF00419 Fimbrial protein 27 179 1.7E-12 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_04785 fbd49b89476c3f00b3d8980e9c2f1f79 181 Pfam PF00293 NUDIX domain 31 149 1.7E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_04785 fbd49b89476c3f00b3d8980e9c2f1f79 181 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 4 177 33.606 T 13-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 CS348_04785 fbd49b89476c3f00b3d8980e9c2f1f79 181 SUPERFAMILY SSF55811 4 168 4.34E-49 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_04785 fbd49b89476c3f00b3d8980e9c2f1f79 181 PIRSF PIRSF018427 1 180 1.5E-55 T 13-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 CS348_04785 fbd49b89476c3f00b3d8980e9c2f1f79 181 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 6 165 7.4E-50 T 13-10-2018 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: R-HSA-191273 CS348_04785 fbd49b89476c3f00b3d8980e9c2f1f79 181 Gene3D G3DSA:3.90.79.10 1 181 2.5E-59 T 13-10-2018 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SUPERFAMILY SSF48452 38 132 2.47E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 37.029 T 13-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SMART SM00028 180 213 53.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SMART SM00028 141 174 310.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SMART SM00028 107 140 430.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SMART SM00028 214 247 0.019 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SMART SM00028 69 102 59.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 Gene3D G3DSA:1.25.40.10 179 344 4.3E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 Gene3D G3DSA:1.25.40.10 41 178 6.0E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 SUPERFAMILY SSF48452 104 281 6.07E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 Pfam PF13432 Tetratricopeptide repeat 113 170 0.0045 T 13-10-2018 CS348_11345 9170344a79637d5d967ab48df39a0b90 389 Pfam PF14559 Tetratricopeptide repeat 191 245 1.6E-6 T 13-10-2018 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 Hamap MF_00020 Acetate kinase [ackA]. 1 396 179.554 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 SUPERFAMILY SSF53067 4 195 1.68E-66 T 13-10-2018 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 Hamap MF_01882 Probable propionate kinase [pduW]. 1 392 72.226 T 13-10-2018 IPR024896 Propionate kinase PduW GO:0008980|GO:0019543|GO:0051144 KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PIRSF PIRSF000722 1 395 1.8E-149 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 Gene3D G3DSA:3.30.420.40 3 195 9.8E-70 T 13-10-2018 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 203 220 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 Gene3D G3DSA:3.30.420.40 196 398 3.0E-81 T 13-10-2018 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 SUPERFAMILY SSF53067 157 392 3.09E-88 T 13-10-2018 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 TIGRFAM TIGR00016 ackA: acetate kinase 2 392 1.1E-156 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 Pfam PF00871 Acetokinase family 4 387 3.9E-150 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PRINTS PR00471 Acetate kinase family signature 300 313 9.8E-43 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PRINTS PR00471 Acetate kinase family signature 173 186 9.8E-43 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PRINTS PR00471 Acetate kinase family signature 5 16 9.8E-43 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PRINTS PR00471 Acetate kinase family signature 203 224 9.8E-43 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PRINTS PR00471 Acetate kinase family signature 374 386 9.8E-43 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_09380 eb51d1ae1664559686a28616b7de108a 404 PRINTS PR00471 Acetate kinase family signature 322 338 9.8E-43 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_14725 9b581be5ca0d886824541ac8272c5d04 179 SUPERFAMILY SSF52949 4 172 3.2E-67 T 13-10-2018 CS348_14725 9b581be5ca0d886824541ac8272c5d04 179 Hamap MF_01205 O-acetyl-ADP-ribose deacetylase [ymdB]. 2 172 47.483 T 13-10-2018 IPR024900 O-acetyl-ADP-ribose deacetylase CS348_14725 9b581be5ca0d886824541ac8272c5d04 179 Pfam PF01661 Macro domain 21 137 2.1E-46 T 13-10-2018 IPR002589 Macro domain CS348_14725 9b581be5ca0d886824541ac8272c5d04 179 SMART SM00506 4 137 4.9E-58 T 13-10-2018 IPR002589 Macro domain CS348_14725 9b581be5ca0d886824541ac8272c5d04 179 Gene3D G3DSA:3.40.220.10 1 177 2.2E-79 T 13-10-2018 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 543 575 1.6E-8 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 286 2.9E-7 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 Pfam PF00005 ABC transporter 33 196 7.2E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 SUPERFAMILY SSF52540 12 268 7.06E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 Gene3D G3DSA:3.40.50.300 10 305 5.0E-82 T 13-10-2018 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 Gene3D G3DSA:3.40.50.300 311 612 1.5E-84 T 13-10-2018 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 Pfam PF00005 ABC transporter 341 491 6.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 ProSitePatterns PS00211 ABC transporters family signature. 464 478 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 SMART SM00382 41 246 7.7E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 SMART SM00382 349 549 2.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16095 0e4bf2b4d2b9f5ae61f128c557110b5d 623 SUPERFAMILY SSF52540 314 563 3.3E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19680 208503e9998807d113c37604b2b71d95 276 Pfam PF08478 POTRA domain, FtsQ-type 57 126 2.0E-20 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type CS348_19680 208503e9998807d113c37604b2b71d95 276 Gene3D G3DSA:3.40.50.11690 127 260 1.8E-50 T 13-10-2018 CS348_19680 208503e9998807d113c37604b2b71d95 276 Pfam PF03799 Cell division protein FtsQ 130 247 1.5E-27 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB CS348_19680 208503e9998807d113c37604b2b71d95 276 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 26 255 26.012 T 13-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 CS348_19680 208503e9998807d113c37604b2b71d95 276 Gene3D G3DSA:3.10.20.310 58 126 1.0E-32 T 13-10-2018 CS348_22360 c3b821196905950d77970de3acb50ddb 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 24 37 5.8E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_22360 c3b821196905950d77970de3acb50ddb 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 47 67 5.8E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_22360 c3b821196905950d77970de3acb50ddb 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 24 5.8E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_22360 c3b821196905950d77970de3acb50ddb 152 SMART SM00422 12 80 2.1E-22 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_22360 c3b821196905950d77970de3acb50ddb 152 ProSitePatterns PS00552 MerR-type HTH domain signature. 15 37 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_22360 c3b821196905950d77970de3acb50ddb 152 Pfam PF00376 MerR family regulatory protein 13 49 1.4E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_22360 c3b821196905950d77970de3acb50ddb 152 Gene3D G3DSA:1.10.1660.10 1 135 1.2E-33 T 13-10-2018 CS348_22360 c3b821196905950d77970de3acb50ddb 152 SUPERFAMILY SSF46955 12 134 3.44E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_22360 c3b821196905950d77970de3acb50ddb 152 Pfam PF09278 MerR, DNA binding 54 119 3.5E-14 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding CS348_22360 c3b821196905950d77970de3acb50ddb 152 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 12 151 4.8E-74 T 13-10-2018 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 CS348_04580 ce930723ecee252342b6fde57ee84725 227 Pfam PF00005 ABC transporter 31 172 1.6E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_04580 ce930723ecee252342b6fde57ee84725 227 SMART SM00382 29 221 3.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_04580 ce930723ecee252342b6fde57ee84725 227 Gene3D G3DSA:3.40.50.300 21 225 2.7E-40 T 13-10-2018 CS348_04580 ce930723ecee252342b6fde57ee84725 227 SUPERFAMILY SSF52540 24 222 7.98E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22150 e3bedbcb99616515252380c547088723 543 Gene3D G3DSA:3.30.450.20 209 325 9.7E-32 T 13-10-2018 CS348_22150 e3bedbcb99616515252380c547088723 543 SUPERFAMILY SSF103190 46 179 1.8E-39 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CS348_22150 e3bedbcb99616515252380c547088723 543 SUPERFAMILY SSF55785 221 322 5.9E-8 T 13-10-2018 IPR035965 PAS domain superfamily CS348_22150 e3bedbcb99616515252380c547088723 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 522 535 6.5E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22150 e3bedbcb99616515252380c547088723 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 516 6.5E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22150 e3bedbcb99616515252380c547088723 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 6.5E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22150 e3bedbcb99616515252380c547088723 543 Gene3D G3DSA:3.30.450.20 41 181 6.0E-45 T 13-10-2018 CS348_22150 e3bedbcb99616515252380c547088723 543 SUPERFAMILY SSF55874 432 535 1.06E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_22150 e3bedbcb99616515252380c547088723 543 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 435 535 3.6E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_22150 e3bedbcb99616515252380c547088723 543 SUPERFAMILY SSF55890 339 450 7.72E-15 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 CS348_22150 e3bedbcb99616515252380c547088723 543 Pfam PF00989 PAS fold 222 323 1.9E-13 T 13-10-2018 IPR013767 PAS fold GO:0006355 CS348_22150 e3bedbcb99616515252380c547088723 543 SMART SM00387 430 538 4.3E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_22150 e3bedbcb99616515252380c547088723 543 Gene3D G3DSA:3.30.565.10 401 541 2.1E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_22150 e3bedbcb99616515252380c547088723 543 SMART SM00091 222 288 5.1E-4 T 13-10-2018 IPR000014 PAS domain CS348_22150 e3bedbcb99616515252380c547088723 543 Pfam PF17203 Single cache domain 3 48 178 3.9E-24 T 13-10-2018 IPR033463 Single cache domain 3 CS348_22150 e3bedbcb99616515252380c547088723 543 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 332 384 5.6E-10 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 7.7E-30 T 13-10-2018 IPR032305 GTP-binding protein, middle domain CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 1.0E-30 T 13-10-2018 IPR025121 GTPase HflX, N-terminal CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 Gene3D G3DSA:3.40.50.11060 18 138 1.3E-36 T 13-10-2018 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 3.8E-155 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 Hamap MF_00900 GTPase HflX [hflX]. 27 390 48.682 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 SUPERFAMILY SSF54980 365 421 4.39E-14 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 SUPERFAMILY SSF52540 197 373 5.98E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 PIRSF PIRSF006809 3 420 2.4E-151 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 6.1E-10 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 6.1E-10 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 6.1E-10 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 Gene3D G3DSA:3.40.50.300 197 368 1.2E-38 T 13-10-2018 CS348_21810 3d0a89ab0d384b5f6fa6874d87cfe214 426 Pfam PF01926 50S ribosome-binding GTPase 200 318 4.3E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 PIRSF PIRSF005902 1 260 1.3E-77 T 13-10-2018 IPR001130 TatD family GO:0016788 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 Gene3D G3DSA:3.20.20.140 1 260 5.3E-104 T 13-10-2018 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 Pfam PF01026 TatD related DNase 2 256 4.4E-71 T 13-10-2018 IPR001130 TatD family GO:0016788 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 189 205 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 259 64.393 T 13-10-2018 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 123 133 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CS348_23925 74e0f00a6f69c7d41cb7bb85088d568d 260 SUPERFAMILY SSF51556 1 257 5.71E-87 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 547 41.492 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 3.1E-257 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 SUPERFAMILY SSF52029 185 376 3.14E-83 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.6E-94 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 Gene3D G3DSA:3.50.7.10 173 379 7.1E-243 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 Gene3D G3DSA:1.10.560.10 8 521 7.1E-243 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 SUPERFAMILY SSF54849 137 203 1.42E-24 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 SUPERFAMILY SSF48592 7 521 9.16E-78 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CS348_21965 a9d29d407f1b6d4b4512618a67b357b9 548 Gene3D G3DSA:3.30.260.10 138 410 7.1E-243 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 570 58.619 T 13-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Gene3D G3DSA:3.30.413.10 141 348 1.7E-91 T 13-10-2018 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 SUPERFAMILY SSF56014 429 559 3.79E-34 T 13-10-2018 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 429 546 3.3E-4 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 81 138 2.9E-12 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 353 413 2.1E-12 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 477 493 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 558 8.3E-299 T 13-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Gene3D G3DSA:3.90.480.20 16 414 1.7E-91 T 13-10-2018 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 SUPERFAMILY SSF55124 346 422 5.56E-21 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 SUPERFAMILY SSF56014 150 344 2.09E-61 T 13-10-2018 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 SUPERFAMILY SSF55124 13 142 6.87E-25 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 331 1.5E-47 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 Gene3D G3DSA:3.30.413.10 425 567 6.3E-38 T 13-10-2018 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 PRINTS PR00397 Sirohaem Fe-binding site signature 429 447 1.1E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05290 04e894c258d3c1db9c06622fd92b2cec 570 PRINTS PR00397 Sirohaem Fe-binding site signature 477 495 1.1E-8 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 Pfam PF01266 FAD dependent oxidoreductase 2 396 7.7E-75 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 Gene3D G3DSA:3.50.50.60 1 80 4.2E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 SUPERFAMILY SSF51905 1 417 3.11E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 54.406 T 13-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 SUPERFAMILY SSF54373 269 359 6.28E-17 T 13-10-2018 CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 Gene3D G3DSA:3.50.50.60 106 403 1.8E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_10805 dc1042f285ed9940b829077fea42ba5f 432 Gene3D G3DSA:3.30.9.10 134 361 1.8E-50 T 13-10-2018 CS348_08695 71ab8de1fb4235ef60068eb71c0168e7 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 8.1E-48 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 Gene3D G3DSA:3.40.1380.20 336 467 9.0E-48 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 7.0E-77 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 9.0E-152 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 Gene3D G3DSA:3.20.20.60 4 332 6.0E-146 T 13-10-2018 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 SUPERFAMILY SSF51621 1 339 3.42E-100 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 4.8E-191 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 SUPERFAMILY SSF52935 323 469 7.85E-36 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 3.6E-29 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 SUPERFAMILY SSF50800 70 166 1.92E-29 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily CS348_13190 f6f6eb81dd9969c494d9aa358e6b42b2 470 Gene3D G3DSA:2.40.33.10 71 167 6.0E-146 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_07130 a17390497c17a8e0a91359dd0a54116b 212 PIRSF PIRSF028103 27 202 3.2E-67 T 13-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 CS348_07130 a17390497c17a8e0a91359dd0a54116b 212 Gene3D G3DSA:3.30.70.260 114 211 4.0E-39 T 13-10-2018 CS348_07130 a17390497c17a8e0a91359dd0a54116b 212 SUPERFAMILY SSF55021 114 201 5.83E-18 T 13-10-2018 CS348_07130 a17390497c17a8e0a91359dd0a54116b 212 SUPERFAMILY SSF55021 28 110 9.99E-17 T 13-10-2018 CS348_07130 a17390497c17a8e0a91359dd0a54116b 212 Pfam PF13740 ACT domain 29 104 5.1E-25 T 13-10-2018 CS348_07130 a17390497c17a8e0a91359dd0a54116b 212 Gene3D G3DSA:3.30.70.260 26 110 5.4E-25 T 13-10-2018 CS348_00315 a8cf3a76fc6bd1ef41c0dc1491defc9f 119 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 1 113 8.6E-42 T 13-10-2018 IPR009387 Toxin HigB-2 CS348_00315 a8cf3a76fc6bd1ef41c0dc1491defc9f 119 PIRSF PIRSF018634 1 117 1.7E-49 T 13-10-2018 IPR009387 Toxin HigB-2 CS348_16380 e887756e744a7f30a7b5adb59456c310 506 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 13-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 CS348_16380 e887756e744a7f30a7b5adb59456c310 506 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 44.739 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16380 e887756e744a7f30a7b5adb59456c310 506 Gene3D G3DSA:1.20.200.10 198 505 8.8E-122 T 13-10-2018 CS348_16380 e887756e744a7f30a7b5adb59456c310 506 SUPERFAMILY SSF48557 3 504 1.88E-193 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CS348_16380 e887756e744a7f30a7b5adb59456c310 506 Gene3D G3DSA:1.10.275.10 2 197 7.8E-72 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CS348_16380 e887756e744a7f30a7b5adb59456c310 506 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 4 503 5.5E-223 T 13-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16380 e887756e744a7f30a7b5adb59456c310 506 Pfam PF00221 Aromatic amino acid lyase 11 471 5.4E-187 T 13-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 171 3.1E-43 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 Gene3D G3DSA:3.40.50.300 1 184 2.2E-52 T 13-10-2018 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 Pfam PF01926 50S ribosome-binding GTPase 11 125 1.6E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 SUPERFAMILY SSF54814 182 297 1.37E-40 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 Pfam PF07650 KH domain 209 285 1.3E-19 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 Gene3D G3DSA:3.30.300.20 186 301 1.2E-42 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 280 2.0E-119 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 SUPERFAMILY SSF52540 11 205 1.27E-43 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06650 31ad12b1dfe3766c33d0c72ed7d91f12 301 Hamap MF_00367 GTPase Era [era]. 6 297 35.319 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 SMART SM00052 431 677 3.1E-107 T 13-10-2018 IPR001633 EAL domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 SUPERFAMILY SSF141868 436 683 1.03E-84 T 13-10-2018 IPR035919 EAL domain superfamily CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Pfam PF00990 Diguanylate cyclase, GGDEF domain 261 416 1.4E-44 T 13-10-2018 IPR000160 GGDEF domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Gene3D G3DSA:3.20.20.450 434 684 1.9E-96 T 13-10-2018 IPR035919 EAL domain superfamily CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 257 419 1.3E-39 T 13-10-2018 IPR000160 GGDEF domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Pfam PF00563 EAL domain 439 672 3.6E-70 T 13-10-2018 IPR001633 EAL domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 SUPERFAMILY SSF55073 266 423 1.73E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Gene3D G3DSA:3.30.70.270 255 433 4.1E-57 T 13-10-2018 CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 SMART SM00267 250 421 6.5E-61 T 13-10-2018 IPR000160 GGDEF domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Pfam PF03707 Bacterial signalling protein N terminal repeat 115 165 9.1E-16 T 13-10-2018 IPR005330 MHYT domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 108 5.4E-18 T 13-10-2018 IPR005330 MHYT domain CS348_02270 5ebee9f6b7c81bd25410c6c35fe9dcb8 699 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 244 3.0E-9 T 13-10-2018 IPR005330 MHYT domain CS348_02950 d43ea929e55314061151379379b49df0 284 SUPERFAMILY SSF51569 3 283 1.9E-98 T 13-10-2018 CS348_02950 d43ea929e55314061151379379b49df0 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 2.3E-151 T 13-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CS348_02950 d43ea929e55314061151379379b49df0 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 2 283 2.9E-102 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_02950 d43ea929e55314061151379379b49df0 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 7 283 2.4E-98 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_02950 d43ea929e55314061151379379b49df0 284 Hamap MF_01294 D-tagatose-1,6-bisphosphate aldolase subunit GatY [gatY]. 1 284 65.327 T 13-10-2018 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY GO:0009025|GO:0019404|GO:2001059 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 CS348_02950 d43ea929e55314061151379379b49df0 284 PIRSF PIRSF001359 1 284 3.7E-112 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_02950 d43ea929e55314061151379379b49df0 284 Gene3D G3DSA:3.20.20.70 1 284 1.8E-104 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02950 d43ea929e55314061151379379b49df0 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 Gene3D G3DSA:1.20.140.10 311 453 1.6E-196 T 13-10-2018 CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 Hamap MF_01182 Cytochrome c-552 [nrfA]. 1 477 59.283 T 13-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 38 475 1.6E-256 T 13-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 Gene3D G3DSA:1.10.1130.10 42 472 1.6E-196 T 13-10-2018 CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 SUPERFAMILY SSF48695 38 472 5.2E-164 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 Pfam PF02335 Cytochrome c552 43 472 3.5E-178 T 13-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CS348_22295 f6428b8c55f3ee7b28f62884522fc331 478 PIRSF PIRSF000243 23 478 2.5E-127 T 13-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 SUPERFAMILY SSF81665 202 726 3.53E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Pfam PF00122 E1-E2 ATPase 237 417 1.4E-56 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 ProSitePatterns PS01047 Heavy-metal-associated domain. 15 44 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Pfam PF00403 Heavy-metal-associated domain 14 70 5.0E-19 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 584 594 7.8E-30 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 438 452 7.8E-30 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 573 7.8E-30 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 637 656 7.8E-30 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 286 300 7.8E-30 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 672 7.8E-30 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Gene3D G3DSA:2.70.150.20 229 341 2.7E-42 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 151 747 1.4E-179 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Gene3D G3DSA:3.40.50.1000 419 689 8.0E-92 T 13-10-2018 IPR023214 HAD superfamily CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Gene3D G3DSA:3.30.70.100 1 77 6.6E-24 T 13-10-2018 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 208 716 3.4E-93 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Gene3D G3DSA:3.40.1110.10 449 569 8.0E-92 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 169 746 2.2E-188 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 668 693 3.9E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 609 625 3.9E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 515 533 3.9E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 637 653 3.9E-11 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 SUPERFAMILY SSF55008 7 75 3.01E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 440 446 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 SUPERFAMILY SSF81653 240 336 9.68E-30 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 SUPERFAMILY SSF56784 436 744 1.96E-61 T 13-10-2018 IPR036412 HAD-like superfamily CS348_18610 e5344d9380f90f7405bf3d4fd1592965 762 Pfam PF00702 haloacid dehalogenase-like hydrolase 435 651 2.8E-44 T 13-10-2018 CS348_09895 88a836b915bade2913b70f758314b7bd 560 Pfam PF01514 Secretory protein of YscJ/FliF family 33 221 1.6E-76 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF CS348_09895 88a836b915bade2913b70f758314b7bd 560 PRINTS PR01009 Flagellar M-ring protein signature 122 140 7.8E-46 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 PRINTS PR01009 Flagellar M-ring protein signature 266 284 7.8E-46 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 PRINTS PR01009 Flagellar M-ring protein signature 154 168 7.8E-46 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 PRINTS PR01009 Flagellar M-ring protein signature 197 215 7.8E-46 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 PRINTS PR01009 Flagellar M-ring protein signature 365 389 7.8E-46 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 PIRSF PIRSF004862 4 560 6.8E-179 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 8 559 1.9E-213 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 CS348_09895 88a836b915bade2913b70f758314b7bd 560 Gene3D G3DSA:3.30.300.30 123 224 3.1E-10 T 13-10-2018 CS348_09895 88a836b915bade2913b70f758314b7bd 560 Pfam PF08345 Flagellar M-ring protein C-terminal 253 437 5.2E-51 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Gene3D G3DSA:1.10.287.470 87 110 2.1E-6 T 13-10-2018 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 65 85 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 352 367 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 249 270 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 387 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 282 306 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 23 46 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 306 329 1.1E-36 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Gene3D G3DSA:2.40.50.100 237 273 2.7E-16 T 13-10-2018 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Pfam PF13533 Biotin-lipoyl like 59 91 1.4E-5 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Gene3D G3DSA:1.10.287.470 140 236 2.7E-16 T 13-10-2018 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Pfam PF13437 HlyD family secretion protein 236 339 7.4E-15 T 13-10-2018 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Gene3D G3DSA:2.40.50.100 54 86 2.1E-6 T 13-10-2018 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 179 387 3.0E-62 T 13-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CS348_06340 a3e819202fb3d5bba11423877d90c8e4 387 Gene3D G3DSA:2.40.30.170 274 365 2.7E-16 T 13-10-2018 CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 13-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 SMART SM00829 11 325 2.6E-26 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 2.4E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 Gene3D G3DSA:3.40.50.720 124 269 3.2E-124 T 13-10-2018 CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 SUPERFAMILY SSF51735 113 275 3.86E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 Gene3D G3DSA:3.90.180.10 11 321 3.2E-124 T 13-10-2018 CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 SUPERFAMILY SSF50129 8 142 1.13E-33 T 13-10-2018 IPR011032 GroES-like superfamily CS348_22470 73ac88dbcda06e0071f675d3bb94e97b 327 Pfam PF00107 Zinc-binding dehydrogenase 152 257 1.8E-29 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 Gene3D G3DSA:3.40.50.1100 43 145 3.7E-123 T 13-10-2018 CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 312 7.5E-137 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 312 1.2E-145 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 Gene3D G3DSA:3.40.50.1100 12 307 3.7E-123 T 13-10-2018 CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 300 3.8E-69 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_07415 d150a431e34744c62b40fea8e36a7aec 323 SUPERFAMILY SSF53686 3 317 4.71E-97 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_22520 43d0116c3e665f77236264f63910c842 806 Pfam PF01553 Acyltransferase 282 424 3.9E-26 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_22520 43d0116c3e665f77236264f63910c842 806 PIRSF PIRSF000437 19 806 0.0 T 13-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 CS348_22520 43d0116c3e665f77236264f63910c842 806 SUPERFAMILY SSF69593 246 485 1.96E-23 T 13-10-2018 CS348_22520 43d0116c3e665f77236264f63910c842 806 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 799 0.0 T 13-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 CS348_22520 43d0116c3e665f77236264f63910c842 806 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 803 33.404 T 13-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 CS348_22520 43d0116c3e665f77236264f63910c842 806 PIRSF PIRSF500064 2 806 0.0 T 13-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 CS348_22520 43d0116c3e665f77236264f63910c842 806 SMART SM00563 300 427 7.8E-28 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 4 351 42.826 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 Gene3D G3DSA:3.30.1490.20 155 224 5.8E-96 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 107 118 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 Pfam PF01820 D-ala D-ala ligase N-terminus 5 130 3.1E-29 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 Pfam PF07478 D-ala D-ala ligase C-terminus 147 348 4.3E-83 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 Gene3D G3DSA:3.40.50.20 1 128 3.2E-49 T 13-10-2018 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 SUPERFAMILY SSF52440 3 139 1.34E-35 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 PIRSF PIRSF039102 1 359 2.7E-138 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 293 321 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 Gene3D G3DSA:3.30.470.20 129 353 5.8E-96 T 13-10-2018 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 5 350 7.3E-118 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18470 02672be8b1e9abe30a038a21c7e0cc34 364 SUPERFAMILY SSF56059 140 356 1.75E-61 T 13-10-2018 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 SUPERFAMILY SSF55681 4 255 3.23E-108 T 13-10-2018 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 2.3E-33 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 2.3E-33 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 2.3E-33 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 2.3E-33 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 2.3E-33 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 SUPERFAMILY SSF101353 256 465 1.23E-61 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 SUPERFAMILY SSF55186 552 708 1.44E-51 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 SUPERFAMILY SSF50447 455 551 3.53E-20 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 SMART SM00863 653 696 1.2E-21 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Gene3D G3DSA:3.30.980.10 563 697 9.9E-52 T 13-10-2018 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Gene3D G3DSA:3.10.310.40 764 872 2.5E-33 T 13-10-2018 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Gene3D G3DSA:3.30.930.10 2 252 3.3E-126 T 13-10-2018 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 5.7E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Pfam PF01411 tRNA synthetases class II (A) 7 556 1.0E-240 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Pfam PF02272 DHHA1 domain 732 871 6.3E-31 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 209.729 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Gene3D G3DSA:2.40.30.130 462 552 8.6E-12 T 13-10-2018 CS348_05910 bf6c0b4816d7fac1fb138e6501c2601a 876 Gene3D G3DSA:3.30.54.20 624 677 9.9E-52 T 13-10-2018 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 1.2E-16 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Pfam PF00152 tRNA synthetases class II (D, K and N) 118 558 4.6E-107 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 586 1.3E-278 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Pfam PF02938 GAD domain 307 406 1.5E-32 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 SUPERFAMILY SSF50249 1 105 1.75E-34 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.712 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 SUPERFAMILY SSF55681 108 584 1.13E-106 T 13-10-2018 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Gene3D G3DSA:2.40.50.140 1 106 4.3E-36 T 13-10-2018 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Gene3D G3DSA:3.30.1360.30 271 420 1.2E-200 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 SUPERFAMILY SSF55261 288 419 4.41E-48 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CS348_10235 3a9062749a52fd916e0080efc31a57ca 590 Gene3D G3DSA:3.30.930.10 118 578 1.2E-200 T 13-10-2018 CS348_00790 191780216d93447741721f0f1796c04e 463 Pfam PF03841 L-seryl-tRNA selenium transferase 83 451 1.2E-178 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CS348_00790 191780216d93447741721f0f1796c04e 463 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 459 1.7E-190 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CS348_00790 191780216d93447741721f0f1796c04e 463 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 463 255.169 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CS348_00790 191780216d93447741721f0f1796c04e 463 Gene3D G3DSA:3.40.640.10 95 359 1.2E-160 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_00790 191780216d93447741721f0f1796c04e 463 Gene3D G3DSA:3.90.1150.110 11 453 1.2E-160 T 13-10-2018 CS348_00790 191780216d93447741721f0f1796c04e 463 SUPERFAMILY SSF53383 74 461 3.45E-46 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_00790 191780216d93447741721f0f1796c04e 463 Pfam PF12390 Selenocysteine synthase N terminal 9 48 2.6E-9 T 13-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 941 26.889 T 13-10-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SUPERFAMILY SSF47384 453 535 2.16E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 581 690 3.5E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Gene3D G3DSA:1.10.287.130 446 532 2.9E-23 T 13-10-2018 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SMART SM00388 469 534 1.7E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SUPERFAMILY SSF52172 824 946 3.13E-38 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SUPERFAMILY SSF55874 523 692 2.49E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 709 799 3.3E-34 T 13-10-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Gene3D G3DSA:3.30.565.10 535 693 1.1E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Pfam PF00512 His Kinase A (phospho-acceptor) domain 469 533 5.2E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Gene3D G3DSA:3.40.50.2300 820 948 1.9E-39 T 13-10-2018 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Gene3D G3DSA:3.40.50.10970 707 819 1.3E-57 T 13-10-2018 IPR038388 RcsC, C-terminal domain superfamily CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 Pfam PF00072 Response regulator receiver domain 827 936 4.5E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 635 645 5.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 617 631 5.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 652 670 5.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 PRINTS PR00344 Bacterial sensor protein C-terminal signature 676 689 5.5E-18 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SUPERFAMILY SSF52172 701 815 1.04E-39 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SMART SM00387 581 692 5.1E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_08305 f921973c04e69600ecf048897b6ed7a2 948 SMART SM00448 825 936 1.9E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_02875 ec7d6000647dc88a00dd3f0199a37426 105 SUPERFAMILY SSF82771 8 77 1.57E-11 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CS348_02875 ec7d6000647dc88a00dd3f0199a37426 105 Pfam PF01541 GIY-YIG catalytic domain 9 80 5.9E-13 T 13-10-2018 IPR000305 GIY-YIG endonuclease CS348_02875 ec7d6000647dc88a00dd3f0199a37426 105 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 6 97 31.448 T 13-10-2018 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease CS348_02875 ec7d6000647dc88a00dd3f0199a37426 105 SMART SM00465 7 86 7.5E-4 T 13-10-2018 IPR000305 GIY-YIG endonuclease CS348_02875 ec7d6000647dc88a00dd3f0199a37426 105 Gene3D G3DSA:3.40.1440.10 3 103 3.1E-29 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CS348_08745 560ea05477667516af0bad79e8a8d67a 452 Gene3D G3DSA:1.20.1250.20 16 224 4.1E-42 T 13-10-2018 CS348_08745 560ea05477667516af0bad79e8a8d67a 452 Pfam PF07690 Major Facilitator Superfamily 28 287 3.9E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08745 560ea05477667516af0bad79e8a8d67a 452 SUPERFAMILY SSF103473 7 430 7.59E-84 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_08745 560ea05477667516af0bad79e8a8d67a 452 Gene3D G3DSA:1.20.1250.20 245 435 1.3E-28 T 13-10-2018 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 Gene3D G3DSA:3.90.120.10 303 419 6.9E-17 T 13-10-2018 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 144 156 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 76 426 5.1E-53 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 Gene3D G3DSA:1.10.1660.10 1 52 8.9E-6 T 13-10-2018 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 Gene3D G3DSA:3.40.50.150 64 302 5.5E-57 T 13-10-2018 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 5 50 5.9E-9 T 13-10-2018 IPR010093 SinI-like, DNA-binding domain GO:0003677 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 Pfam PF00145 C-5 cytosine-specific DNA methylase 75 426 3.7E-53 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 250 263 1.4E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 74 90 1.4E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 183 197 1.4E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 SUPERFAMILY SSF53335 72 427 3.32E-84 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 408 426 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 CS348_21145 449dfa8f7e1fc9c5b2408a2ba93cf7d1 459 Pfam PF12728 Helix-turn-helix domain 5 49 7.0E-8 T 13-10-2018 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 1.2E-24 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 16.795 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 PIRSF PIRSF006488 1 80 3.2E-24 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 50 2.0E-22 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 SUPERFAMILY SSF116842 3 71 1.96E-22 T 13-10-2018 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 Pfam PF02609 Exonuclease VII small subunit 11 62 1.8E-21 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 CS348_18245 a56e051051ad45741dd7badb179bde7a 80 Gene3D G3DSA:1.10.287.1040 4 79 1.1E-26 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 Pfam PF03925 SeqA protein C-terminal domain 70 178 1.2E-50 T 13-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 Pfam PF17206 SeqA protein N-terminal domain 1 35 7.0E-24 T 13-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 SUPERFAMILY SSF82808 65 180 7.59E-50 T 13-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 Gene3D G3DSA:1.10.1220.10 1 41 1.7E-25 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 Gene3D G3DSA:1.20.1380.10 66 180 5.4E-50 T 13-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 SUPERFAMILY SSF47598 1 35 4.22E-14 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 PIRSF PIRSF019401 64 180 1.4E-33 T 13-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 PIRSF PIRSF019401 1 73 1.8E-18 T 13-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 CS348_16775 7b9c2f47e4b7def3092d064a836add95 180 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 180 45.617 T 13-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 SUPERFAMILY SSF54611 2 141 3.71E-54 T 13-10-2018 IPR035958 SecB-like superfamily CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 2.9E-42 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 2.9E-42 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 2.9E-42 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 2.9E-42 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 Pfam PF02556 Preprotein translocase subunit SecB 5 144 2.2E-58 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 Gene3D G3DSA:3.10.420.10 1 153 2.8E-64 T 13-10-2018 IPR035958 SecB-like superfamily CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.772 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_00710 2999957cf16a18af34fc027e2ff8be0b 155 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 147 4.4E-71 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CS348_20310 15084f2f7d99c3731befc224ab0311f0 134 Pfam PF10807 Protein of unknown function (DUF2541) 3 132 6.9E-71 T 13-10-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI CS348_20310 15084f2f7d99c3731befc224ab0311f0 134 Hamap MF_01372 UPF0412 protein YaaI [yaaI]. 1 134 44.431 T 13-10-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI CS348_20310 15084f2f7d99c3731befc224ab0311f0 134 ProDom PD082838 YAAI PERIPLASMIC STY0011 ECS0013 PRECURSOR SIGNAL 20 134 2.0E-62 T 13-10-2018 IPR020240 Uncharacterised protein family UPF0412, YaaI CS348_22205 78bec337fad04e70d44160868ccdb708 547 Pfam PF08019 Domain of unknown function (DUF1705) 59 209 2.1E-41 T 13-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 CS348_22205 78bec337fad04e70d44160868ccdb708 547 Gene3D G3DSA:3.40.720.10 222 546 4.8E-90 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_22205 78bec337fad04e70d44160868ccdb708 547 SUPERFAMILY SSF53649 239 531 7.63E-21 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_22205 78bec337fad04e70d44160868ccdb708 547 Pfam PF00884 Sulfatase 238 527 2.3E-50 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 ProSitePatterns PS01068 OmpA-like domain. 148 192 - T 13-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 Gene3D G3DSA:3.30.1330.60 79 220 2.3E-55 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 PRINTS PR01021 OMPA domain signature 116 138 1.7E-13 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 PRINTS PR01021 OMPA domain signature 161 177 1.7E-13 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 PRINTS PR01021 OMPA domain signature 146 161 1.7E-13 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 SUPERFAMILY SSF103088 103 218 1.23E-38 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 1.8E-5 T 13-10-2018 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 161 178 1.8E-5 T 13-10-2018 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 1.8E-5 T 13-10-2018 CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 Pfam PF00691 OmpA family 115 210 8.0E-23 T 13-10-2018 IPR006665 OmpA-like domain CS348_01010 ca11b89022ef0831fef9e125e8babdd8 220 Pfam PF13488 Glycine zipper 37 85 2.4E-12 T 13-10-2018 IPR039567 Glycine zipper domain CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 1.1E-34 T 13-10-2018 IPR000362 Fumarate lyase family CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 7.8E-5 T 13-10-2018 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 7.8E-5 T 13-10-2018 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 461 2.4E-250 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 SUPERFAMILY SSF48557 5 457 7.07E-160 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 Pfam PF10415 Fumarase C C-terminus 408 461 4.1E-24 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 Pfam PF00206 Lyase 12 342 9.0E-125 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 Gene3D G3DSA:1.20.200.10 139 407 3.4E-123 T 13-10-2018 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 Gene3D G3DSA:1.10.40.30 408 467 1.8E-30 T 13-10-2018 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 91.876 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_12710 f2c52ca4c5a5d97d8fbeb5da505f47d6 467 Gene3D G3DSA:1.10.275.10 5 138 9.9E-58 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CS348_20250 bd9fae144dca658c83741f5326756e8d 873 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 322 332 - T 13-10-2018 IPR018030 Fimbrial membrane usher, conserved site CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Pfam PF00577 Outer membrane usher protein 208 787 5.7E-205 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Pfam PF13954 PapC N-terminal domain 38 189 6.3E-48 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Gene3D G3DSA:3.10.20.410 36 167 3.6E-38 T 13-10-2018 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Gene3D G3DSA:2.60.40.3110 280 369 1.7E-36 T 13-10-2018 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Gene3D G3DSA:2.60.40.2070 793 873 1.4E-25 T 13-10-2018 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 SUPERFAMILY SSF141729 60 181 1.44E-33 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Gene3D G3DSA:2.60.40.2610 702 792 1.3E-31 T 13-10-2018 CS348_20250 bd9fae144dca658c83741f5326756e8d 873 Pfam PF13953 PapC C-terminal domain 796 859 2.5E-22 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_22490 3767f69fcba783a15c07d8654123c83a 171 SUPERFAMILY SSF46785 12 144 2.78E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22490 3767f69fcba783a15c07d8654123c83a 171 Pfam PF01475 Ferric uptake regulator family 20 138 2.6E-14 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CS348_22490 3767f69fcba783a15c07d8654123c83a 171 Gene3D G3DSA:1.10.10.10 1 89 6.1E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_22490 3767f69fcba783a15c07d8654123c83a 171 Gene3D G3DSA:3.30.1490.190 90 152 1.4E-18 T 13-10-2018 CS348_08350 360c0546b1329d48854d77dae614c852 164 PIRSF PIRSF006865 1 164 1.3E-69 T 13-10-2018 IPR005658 Proteinase inhibitor I11, ecotin CS348_08350 360c0546b1329d48854d77dae614c852 164 Gene3D G3DSA:4.10.1230.10 107 164 4.1E-28 T 13-10-2018 IPR027438 Ecotin, C-terminal CS348_08350 360c0546b1329d48854d77dae614c852 164 Gene3D G3DSA:2.60.40.550 23 106 4.0E-36 T 13-10-2018 CS348_08350 360c0546b1329d48854d77dae614c852 164 Hamap MF_00706 Ecotin [eco]. 1 164 40.333 T 13-10-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria CS348_08350 360c0546b1329d48854d77dae614c852 164 SUPERFAMILY SSF49772 28 162 1.57E-56 T 13-10-2018 IPR036198 Ecotin superfamily CS348_08350 360c0546b1329d48854d77dae614c852 164 Pfam PF03974 Ecotin 32 154 1.4E-52 T 13-10-2018 IPR005658 Proteinase inhibitor I11, ecotin CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 SUPERFAMILY SSF54292 4 109 2.57E-35 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 4.1E-62 T 13-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 Gene3D G3DSA:3.10.20.30 1 111 2.4E-38 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 92 2.5E-15 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 13-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 PRINTS PR00355 Adrenodoxin signature 42 52 8.5E-11 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 PRINTS PR00355 Adrenodoxin signature 60 74 8.5E-11 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CS348_06860 ddd95f560632d6c3c7486db5b3d0cbc8 111 PRINTS PR00355 Adrenodoxin signature 83 91 8.5E-11 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 Gene3D G3DSA:1.10.10.10 1 134 1.8E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 Pfam PF01047 MarR family 29 86 4.3E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 SUPERFAMILY SSF46785 4 135 7.23E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 61 95 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 4 133 1.1E-54 T 13-10-2018 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 SMART SM00347 22 122 2.1E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 1.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 1.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_14990 8e964d36ec96a4ad98c8c2f1baaa7b89 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 1.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_13665 c94c535aca7f7ccd22682fcb93b27326 284 Pfam PF01223 DNA/RNA non-specific endonuclease 45 263 1.4E-45 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 CS348_13665 c94c535aca7f7ccd22682fcb93b27326 284 SMART SM00892 61 265 5.3E-41 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 CS348_13665 c94c535aca7f7ccd22682fcb93b27326 284 SUPERFAMILY SSF54060 44 273 1.47E-49 T 13-10-2018 CS348_13665 c94c535aca7f7ccd22682fcb93b27326 284 SMART SM00477 62 265 7.9E-48 T 13-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 CS348_13665 c94c535aca7f7ccd22682fcb93b27326 284 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 123 131 - T 13-10-2018 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 CS348_13665 c94c535aca7f7ccd22682fcb93b27326 284 Gene3D G3DSA:3.40.570.10 40 284 3.2E-73 T 13-10-2018 CS348_24505 ba1b6788622553113ad098617abb85a6 238 Pfam PF01353 Green fluorescent protein 6 227 2.0E-94 T 13-10-2018 IPR011584 Green fluorescent protein-related GO:0008218 CS348_24505 ba1b6788622553113ad098617abb85a6 238 Gene3D G3DSA:2.40.155.10 66 238 3.8E-86 T 13-10-2018 CS348_24505 ba1b6788622553113ad098617abb85a6 238 Gene3D G3DSA:3.30.1300.40 1 65 8.8E-35 T 13-10-2018 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 193 211 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 49 69 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 3 27 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 70 85 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 130 149 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 150 171 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 214 237 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 109 129 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 173 192 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 28 48 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 PRINTS PR01229 Green fluorescent protein signature 86 108 2.4E-151 T 13-10-2018 IPR000786 Green fluorescent protein, GFP GO:0006091 CS348_24505 ba1b6788622553113ad098617abb85a6 238 SUPERFAMILY SSF54511 2 228 7.92E-79 T 13-10-2018 IPR009017 Green fluorescent protein CS348_19425 f143cad564dd47211293b3b2d157b134 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 71.332 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CS348_19425 f143cad564dd47211293b3b2d157b134 126 SUPERFAMILY SSF50692 1 121 1.74E-47 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_19425 f143cad564dd47211293b3b2d157b134 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.0E-47 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CS348_19425 f143cad564dd47211293b3b2d157b134 126 Gene3D G3DSA:2.40.40.20 1 126 8.7E-56 T 13-10-2018 CS348_19425 f143cad564dd47211293b3b2d157b134 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 7.1E-68 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CS348_19425 f143cad564dd47211293b3b2d157b134 126 PIRSF PIRSF006246 1 125 1.0E-51 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CS348_19425 f143cad564dd47211293b3b2d157b134 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 3.0E-66 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 Pfam PF02154 Flagellar motor switch protein FliM 38 231 8.7E-80 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 SUPERFAMILY SSF103039 49 231 4.18E-18 T 13-10-2018 IPR028976 CheC-like superfamily CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 321 1.6E-117 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 SUPERFAMILY SSF101801 249 323 1.7E-12 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 321 5.0E-16 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 PIRSF PIRSF002888 2 331 1.7E-99 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 Gene3D G3DSA:3.40.1550.10 44 232 4.0E-56 T 13-10-2018 IPR028976 CheC-like superfamily CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 2.9E-32 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 2.9E-32 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 2.9E-32 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_09860 7d79ec3e75df43475b291a0049389cb4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 213 231 2.9E-32 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 CS348_17005 12f0e2ab33874bce82332eef93e7937d 364 SUPERFAMILY SSF53383 6 357 1.21E-83 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_17005 12f0e2ab33874bce82332eef93e7937d 364 Gene3D G3DSA:3.90.1150.10 26 354 2.9E-134 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_17005 12f0e2ab33874bce82332eef93e7937d 364 Pfam PF00155 Aminotransferase class I and II 26 353 2.0E-37 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_17005 12f0e2ab33874bce82332eef93e7937d 364 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 213 226 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CS348_17005 12f0e2ab33874bce82332eef93e7937d 364 Gene3D G3DSA:3.40.640.10 38 262 2.9E-134 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_17005 12f0e2ab33874bce82332eef93e7937d 364 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 8 354 1.4E-105 T 13-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 CS348_22450 d815e3b8e67c1c933ed7d14d4c6c3b0e 237 SUPERFAMILY SSF56784 31 237 9.61E-75 T 13-10-2018 IPR036412 HAD-like superfamily CS348_22450 d815e3b8e67c1c933ed7d14d4c6c3b0e 237 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 11 220 1.1E-51 T 13-10-2018 IPR005519 Acid phosphatase, class B-like CS348_22450 d815e3b8e67c1c933ed7d14d4c6c3b0e 237 PIRSF PIRSF017818 1 237 1.3E-122 T 13-10-2018 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22450 d815e3b8e67c1c933ed7d14d4c6c3b0e 237 Gene3D G3DSA:3.40.50.1000 24 237 5.6E-98 T 13-10-2018 IPR023214 HAD superfamily CS348_22450 d815e3b8e67c1c933ed7d14d4c6c3b0e 237 TIGRFAM TIGR01672 AphA: HAD phosphatase, family IIIB 1 237 3.0E-121 T 13-10-2018 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.581 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 SUPERFAMILY SSF53137 14 129 6.08E-48 T 13-10-2018 CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 13-10-2018 IPR018102 Ribosomal S11, conserved site CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 Pfam PF00411 Ribosomal protein S11 19 128 1.9E-54 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 Gene3D G3DSA:3.30.420.80 1 129 1.5E-58 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 3.0E-55 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02125 c721f01a01c8e70161c47ada92e4bbf1 129 PIRSF PIRSF002131 1 129 7.1E-53 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CS348_07005 42d99b2d39684b0d4cf91b6ac1235a44 449 Pfam PF02601 Exonuclease VII, large subunit 126 440 5.2E-104 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 CS348_07005 42d99b2d39684b0d4cf91b6ac1235a44 449 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.674 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CS348_07005 42d99b2d39684b0d4cf91b6ac1235a44 449 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 358 1.3E-140 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 CS348_07005 42d99b2d39684b0d4cf91b6ac1235a44 449 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 2.5E-32 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 Gene3D G3DSA:3.40.50.12780 195 614 7.2E-77 T 13-10-2018 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 Pfam PF00501 AMP-binding enzyme 233 619 5.5E-67 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 Gene3D G3DSA:3.30.300.30 616 714 1.8E-9 T 13-10-2018 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 SUPERFAMILY SSF56801 200 712 1.57E-96 T 13-10-2018 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 Pfam PF01553 Acyltransferase 15 137 1.5E-17 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 SMART SM00563 30 140 4.4E-27 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 49.094 T 13-10-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 SUPERFAMILY SSF69593 6 171 4.58E-19 T 13-10-2018 CS348_04945 ed84c8faf0ce476ed57aa344e03d52e8 719 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 Gene3D G3DSA:3.40.1350.30 56 211 2.4E-73 T 13-10-2018 CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 SUPERFAMILY SSF53335 3 374 1.75E-57 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 Gene3D G3DSA:3.40.50.150 14 368 2.4E-73 T 13-10-2018 CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 374 3.5E-208 T 13-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 77.792 T 13-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 CS348_15905 b70deed77cdd164a7a0a0ae4aa6fd603 375 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 208 373 5.3E-16 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CS348_19510 344b16819928883bd0414d755d6f8d6c 423 Gene3D G3DSA:3.40.50.10840 3 232 9.6E-70 T 13-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily CS348_19510 344b16819928883bd0414d755d6f8d6c 423 SUPERFAMILY SSF142764 4 416 1.7E-99 T 13-10-2018 CS348_19510 344b16819928883bd0414d755d6f8d6c 423 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 240 409 9.3E-38 T 13-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain CS348_19510 344b16819928883bd0414d755d6f8d6c 423 Pfam PF07005 Putative sugar-binding N-terminal domain 3 225 2.3E-61 T 13-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain CS348_19510 344b16819928883bd0414d755d6f8d6c 423 Gene3D G3DSA:3.40.980.20 233 418 5.4E-27 T 13-10-2018 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 SUPERFAMILY SSF49584 153 240 6.8E-20 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 Gene3D G3DSA:2.60.40.10 28 151 1.2E-43 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 PRINTS PR00969 Pili chaperone signature 76 97 7.3E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 PRINTS PR00969 Pili chaperone signature 172 187 7.3E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 PRINTS PR00969 Pili chaperone signature 27 36 7.3E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 PRINTS PR00969 Pili chaperone signature 105 122 7.3E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 PRINTS PR00969 Pili chaperone signature 133 148 7.3E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 151 1.6E-45 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 Gene3D G3DSA:2.60.40.10 156 245 2.1E-26 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 104 121 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 178 238 3.7E-19 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_19380 4931bde0cc883ce1ee2f9dafb1b05333 245 SUPERFAMILY SSF49354 21 151 3.43E-42 T 13-10-2018 IPR008962 PapD-like superfamily CS348_09145 79d948796b0b84c98dd4c62fc253fcd1 464 Gene3D G3DSA:3.40.50.720 142 261 6.6E-8 T 13-10-2018 CS348_09145 79d948796b0b84c98dd4c62fc253fcd1 464 SUPERFAMILY SSF51735 143 269 9.05E-5 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09145 79d948796b0b84c98dd4c62fc253fcd1 464 Pfam PF13727 CoA-binding domain 66 238 1.6E-40 T 13-10-2018 CS348_09145 79d948796b0b84c98dd4c62fc253fcd1 464 Pfam PF02397 Bacterial sugar transferase 274 456 6.9E-67 T 13-10-2018 IPR003362 Bacterial sugar transferase CS348_09145 79d948796b0b84c98dd4c62fc253fcd1 464 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 43 464 4.3E-149 T 13-10-2018 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase CS348_09145 79d948796b0b84c98dd4c62fc253fcd1 464 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 29 464 1.1E-163 T 13-10-2018 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 25 73 9.1E-7 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 1.6E-162 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 Gene3D G3DSA:3.20.20.70 82 298 1.5E-20 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 157.129 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 PIRSF PIRSF005963 3 321 1.1E-130 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 SMART SM00729 84 293 4.3E-14 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 Pfam PF04055 Radical SAM superfamily 91 251 1.3E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_17060 dcf8c79714786f0fcdb473dc77cf55ec 321 SUPERFAMILY SSF102114 52 316 1.57E-67 T 13-10-2018 CS348_01075 3a8b29849394e9f2dede19e0ce8a8097 339 SUPERFAMILY SSF161098 89 322 2.29E-21 T 13-10-2018 IPR035906 MetI-like superfamily CS348_01075 3a8b29849394e9f2dede19e0ce8a8097 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 6.1E-46 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_01075 3a8b29849394e9f2dede19e0ce8a8097 339 Gene3D G3DSA:1.10.3720.10 88 331 9.8E-26 T 13-10-2018 IPR035906 MetI-like superfamily CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.0E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.0E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.0E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 SUPERFAMILY SSF47729 1 90 1.35E-32 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.3E-33 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 SMART SM00411 1 90 2.3E-43 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 Gene3D G3DSA:4.10.520.10 1 90 1.7E-37 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_22755 1bb50092fec0dda32954ed0fac5a61aa 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CS348_10825 fe0f530eb54557248ce8888c727b82dc 203 Gene3D G3DSA:1.10.530.10 21 203 3.0E-48 T 13-10-2018 CS348_10825 fe0f530eb54557248ce8888c727b82dc 203 Hamap MF_01381 Endo-type membrane-bound lytic murein transglycosylase A [emtA]. 1 203 57.539 T 13-10-2018 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A GO:0008932|GO:0009279|GO:0016837|GO:0016998 CS348_10825 fe0f530eb54557248ce8888c727b82dc 203 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 60 88 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CS348_10825 fe0f530eb54557248ce8888c727b82dc 203 SUPERFAMILY SSF53955 37 197 3.66E-27 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_10825 fe0f530eb54557248ce8888c727b82dc 203 Pfam PF01464 Transglycosylase SLT domain 43 168 1.9E-28 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 SUPERFAMILY SSF46894 152 216 1.12E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 ProSitePatterns PS00622 LuxR-type HTH domain signature. 176 203 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 161 214 2.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 204 4.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 176 4.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 192 4.8E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 SMART SM00421 159 216 2.3E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_03695 291b16bc42eecf1d4d4ab999003c4832 227 Gene3D G3DSA:1.10.10.10 110 225 1.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 Pfam PF00171 Aldehyde dehydrogenase family 17 474 9.2E-171 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 SUPERFAMILY SSF53720 3 480 1.14E-165 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 Gene3D G3DSA:3.40.605.10 19 474 7.5E-176 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 Gene3D G3DSA:3.40.309.10 249 445 7.5E-176 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_14980 0e75ba234bf26f5d5075f55ddd069256 488 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4 487 5.5E-223 T 13-10-2018 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 CS348_10980 6f8506547b0091e210d6f6ab0a9259c0 117 SUPERFAMILY SSF75169 1 117 7.2E-35 T 13-10-2018 IPR027396 DsrEFH-like CS348_10980 6f8506547b0091e210d6f6ab0a9259c0 117 Gene3D G3DSA:3.40.1260.10 1 117 3.7E-33 T 13-10-2018 IPR027396 DsrEFH-like CS348_10980 6f8506547b0091e210d6f6ab0a9259c0 117 Pfam PF02635 DsrE/DsrF-like family 3 117 4.6E-23 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 ProSitePatterns PS00455 Putative AMP-binding domain signature. 237 248 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 57 1.6E-22 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 SUPERFAMILY SSF56801 4 619 6.67E-154 T 13-10-2018 CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 Gene3D G3DSA:3.30.300.30 496 628 1.4E-25 T 13-10-2018 CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 TIGRFAM TIGR02316 propion_prpE: propionate--CoA ligase 1 628 0.0 T 13-10-2018 IPR012694 Propionate--CoA ligase GO:0019629|GO:0050218 KEGG: 00640+6.2.1.17|MetaCyc: PWY-3941|MetaCyc: PWY-5104|MetaCyc: PWY-5747 CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 Pfam PF00501 AMP-binding enzyme 60 500 1.1E-79 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 Gene3D G3DSA:3.40.50.12780 31 493 3.6E-91 T 13-10-2018 CS348_18520 cb1d71f40713f2c39d9be163baf950a5 628 Pfam PF13193 AMP-binding enzyme C-terminal domain 509 592 4.8E-21 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_11990 0082c749754c2c81c4f0978981207910 481 TIGRFAM TIGR03374 ABALDH: 1-pyrroline dehydrogenase 9 480 0.0 T 13-10-2018 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 CS348_11990 0082c749754c2c81c4f0978981207910 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_11990 0082c749754c2c81c4f0978981207910 481 SUPERFAMILY SSF53720 9 480 1.57E-155 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_11990 0082c749754c2c81c4f0978981207910 481 Hamap MF_01275 Gamma-aminobutyraldehyde dehydrogenase [prr]. 8 481 77.924 T 13-10-2018 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 CS348_11990 0082c749754c2c81c4f0978981207910 481 Pfam PF00171 Aldehyde dehydrogenase family 19 477 4.1E-163 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_11990 0082c749754c2c81c4f0978981207910 481 Gene3D G3DSA:3.40.605.10 28 471 4.6E-180 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_11990 0082c749754c2c81c4f0978981207910 481 Gene3D G3DSA:3.40.309.10 256 446 4.6E-180 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 SUPERFAMILY SSF47413 5 64 3.94E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 65 340 3.8E-84 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain CS348_12730 f95217b3d8ba939a9ee707025355b141 342 Gene3D G3DSA:3.40.50.2300 67 336 1.3E-53 T 13-10-2018 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 SMART SM00354 6 76 3.9E-33 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 Gene3D G3DSA:1.10.260.40 2 63 5.0E-21 T 13-10-2018 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 13-10-2018 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 2.0E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12730 f95217b3d8ba939a9ee707025355b141 342 SUPERFAMILY SSF53822 63 332 3.2E-51 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_12730 f95217b3d8ba939a9ee707025355b141 342 Gene3D G3DSA:3.40.50.2300 166 339 1.3E-53 T 13-10-2018 CS348_03670 5bca8b51bf2d5a3cd34911f7c1fbf2d8 494 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_03670 5bca8b51bf2d5a3cd34911f7c1fbf2d8 494 Gene3D G3DSA:3.40.605.10 31 488 3.1E-167 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_03670 5bca8b51bf2d5a3cd34911f7c1fbf2d8 494 SUPERFAMILY SSF53720 9 493 1.7E-155 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_03670 5bca8b51bf2d5a3cd34911f7c1fbf2d8 494 Pfam PF00171 Aldehyde dehydrogenase family 31 490 6.6E-156 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_03670 5bca8b51bf2d5a3cd34911f7c1fbf2d8 494 Gene3D G3DSA:3.40.309.10 270 459 3.1E-167 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_03670 5bca8b51bf2d5a3cd34911f7c1fbf2d8 494 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 SUPERFAMILY SSF103515 1476 1789 1.96E-49 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Gene3D G3DSA:2.40.128.130 1476 1789 3.8E-87 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 642 671 7.9E-5 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 1224 1252 1.9E-11 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 769 798 3.8E-11 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 999 1029 1.7E-12 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 707 736 5.4E-9 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Gene3D G3DSA:2.160.20.20 76 512 4.8E-24 T 13-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Gene3D G3DSA:2.160.20.20 1276 1432 1.8E-42 T 13-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 SUPERFAMILY SSF51126 680 905 6.28E-13 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF13018 Extended Signal Peptide of Type V secretion system 2 24 7.5E-7 T 13-10-2018 IPR024973 ESPR domain CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF03797 Autotransporter beta-domain 1514 1767 1.4E-48 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 SUPERFAMILY SSF51126 992 1430 3.45E-40 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 SUPERFAMILY SSF51126 217 533 5.34E-18 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 1326 1789 2.4E-131 T 13-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF12951 Passenger-associated-transport-repeat 707 735 5.8E-7 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF12951 Passenger-associated-transport-repeat 1000 1028 1.8E-11 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF12951 Passenger-associated-transport-repeat 1225 1252 2.3E-10 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF12951 Passenger-associated-transport-repeat 770 797 4.8E-10 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 Pfam PF12951 Passenger-associated-transport-repeat 642 670 9.4E-5 T 13-10-2018 IPR013425 Autotransporter-associated beta strand repeat CS348_07000 828934761ca3e770f5b6997dff4ed3f1 1789 SMART SM00869 1511 1778 9.6E-47 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 Gene3D G3DSA:3.40.1690.10 210 351 1.8E-48 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 221 238 2.5E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 265 280 2.5E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 295 316 2.5E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 5 27 2.5E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 201 219 2.5E-37 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 SUPERFAMILY SSF160544 237 344 2.35E-30 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 Pfam PF01312 FlhB HrpN YscU SpaS Family 2 340 1.9E-99 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_12965 a09993b517bcdf2bf32a90b7ae23272d 352 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 2 342 1.3E-133 T 13-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 296 3.6E-102 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 Gene3D G3DSA:3.20.20.70 140 286 9.5E-119 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 129 1.1E-25 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 SUPERFAMILY SSF51690 131 296 3.77E-59 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 SUPERFAMILY SSF54675 13 130 1.69E-34 T 13-10-2018 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 Gene3D G3DSA:3.90.1170.20 22 295 9.5E-119 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 131 295 8.2E-60 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 CS348_19595 8fa6e0af0f28f49c17e063d30cca0159 297 PIRSF PIRSF006250 17 297 2.7E-109 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 CS348_02890 a9cd9a01ac627b0c24bf73bbeeb6fac4 211 Gene3D G3DSA:3.40.50.720 1 211 9.6E-53 T 13-10-2018 CS348_02890 a9cd9a01ac627b0c24bf73bbeeb6fac4 211 SMART SM00859 3 103 0.004 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_02890 a9cd9a01ac627b0c24bf73bbeeb6fac4 211 Pfam PF13460 NAD(P)H-binding 8 190 2.9E-10 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_02890 a9cd9a01ac627b0c24bf73bbeeb6fac4 211 SUPERFAMILY SSF51735 2 200 1.07E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Pfam PF08529 NusA N-terminal domain 4 123 3.4E-37 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 370 419 4.0E-21 T 13-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication CS348_02805 a1659ddad0e510e14500c96d5435db39 500 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 445 494 4.3E-19 T 13-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Gene3D G3DSA:3.30.300.20 283 350 8.7E-23 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Pfam PF14520 Helix-hairpin-helix domain 437 491 8.6E-9 T 13-10-2018 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 415 29.028 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SUPERFAMILY SSF50249 132 204 1.9E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Gene3D G3DSA:1.10.150.20 357 426 9.6E-32 T 13-10-2018 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Pfam PF13184 NusA-like KH domain 235 302 1.6E-27 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Gene3D G3DSA:3.30.1480.10 1 129 6.8E-47 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SUPERFAMILY SSF54814 206 283 3.73E-29 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SUPERFAMILY SSF47794 360 419 4.55E-17 T 13-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SUPERFAMILY SSF47794 434 497 7.06E-18 T 13-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Gene3D G3DSA:2.40.50.140 135 203 2.5E-16 T 13-10-2018 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SMART SM00322 235 298 16.0 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SMART SM00322 306 368 0.29 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Gene3D G3DSA:3.30.300.20 204 282 6.0E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_02805 a1659ddad0e510e14500c96d5435db39 500 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 347 4.3E-130 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SUPERFAMILY SSF69705 1 126 2.22E-41 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 Gene3D G3DSA:1.10.150.20 436 495 1.5E-27 T 13-10-2018 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SMART SM00316 133 205 1.9E-5 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_02805 a1659ddad0e510e14500c96d5435db39 500 SUPERFAMILY SSF54814 284 348 3.23E-15 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CS348_23620 4bfddb772b6991a98f5240a7c6d94379 309 SUPERFAMILY SSF144020 24 306 6.41E-99 T 13-10-2018 IPR024064 FdhE-like superfamily CS348_23620 4bfddb772b6991a98f5240a7c6d94379 309 Gene3D G3DSA:3.90.1670.10 23 308 6.7E-96 T 13-10-2018 IPR024064 FdhE-like superfamily CS348_23620 4bfddb772b6991a98f5240a7c6d94379 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 22 304 1.6E-117 T 13-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CS348_23620 4bfddb772b6991a98f5240a7c6d94379 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 305 1.6E-152 T 13-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CS348_23620 4bfddb772b6991a98f5240a7c6d94379 309 PIRSF PIRSF018296 1 309 8.5E-138 T 13-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CS348_23620 4bfddb772b6991a98f5240a7c6d94379 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 306 50.23 T 13-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 292 307 7.1E-26 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 7.1E-26 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 7.1E-26 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 7.1E-26 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 7.1E-26 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 PRINTS PR01041 Methionyl-tRNA synthetase signature 385 396 7.1E-26 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Gene3D G3DSA:3.40.50.620 8 385 1.8E-164 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 543 677 2.2E-47 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 SUPERFAMILY SSF52374 6 388 8.81E-107 T 13-10-2018 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 SUPERFAMILY SSF57770 142 176 1.23E-12 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Pfam PF01588 Putative tRNA binding domain 581 674 2.7E-22 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Gene3D G3DSA:1.10.730.10 390 527 7.3E-35 T 13-10-2018 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 SUPERFAMILY SSF50249 570 676 2.94E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Pfam PF09334 tRNA synthetases class I (M) 8 397 3.7E-166 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 546 41.955 T 13-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 536 5.2E-209 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Gene3D G3DSA:2.40.50.140 568 677 1.6E-31 T 13-10-2018 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 SUPERFAMILY SSF47323 391 548 1.07E-46 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_08875 1d90712b9e9308ff2c76bb59bbd3e26a 677 Gene3D G3DSA:2.20.28.20 142 176 1.8E-164 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_18990 84e13370cadc216735338a61fc8a09cf 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 7.7E-21 T 13-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CS348_18990 84e13370cadc216735338a61fc8a09cf 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 44.893 T 13-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CS348_18990 84e13370cadc216735338a61fc8a09cf 251 PIRSF PIRSF005457 1 251 7.5E-89 T 13-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CS348_18990 84e13370cadc216735338a61fc8a09cf 251 Gene3D G3DSA:3.60.15.10 1 251 3.0E-109 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_18990 84e13370cadc216735338a61fc8a09cf 251 SUPERFAMILY SSF56281 1 250 2.88E-67 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_18990 84e13370cadc216735338a61fc8a09cf 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 4.4E-102 T 13-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CS348_18990 84e13370cadc216735338a61fc8a09cf 251 Pfam PF00753 Metallo-beta-lactamase superfamily 13 165 3.1E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_18990 84e13370cadc216735338a61fc8a09cf 251 SMART SM00849 11 165 5.5E-38 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_07265 0fe3723daa751df91b851d3bf960841a 467 Pfam PF00171 Aldehyde dehydrogenase family 35 422 6.3E-32 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_07265 0fe3723daa751df91b851d3bf960841a 467 SUPERFAMILY SSF53720 34 458 6.15E-64 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_07265 0fe3723daa751df91b851d3bf960841a 467 PIRSF PIRSF036410 1 467 1.7E-212 T 13-10-2018 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related CS348_07265 0fe3723daa751df91b851d3bf960841a 467 Gene3D G3DSA:3.40.309.10 241 427 9.3E-118 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_07265 0fe3723daa751df91b851d3bf960841a 467 Gene3D G3DSA:3.40.605.10 37 439 9.3E-118 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 Pfam PF13307 Helicase C-terminal domain 459 616 2.3E-34 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 Gene3D G3DSA:3.40.50.300 439 631 6.1E-37 T 13-10-2018 CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 SMART SM00491 474 603 3.8E-55 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 SMART SM00487 16 286 0.002 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 SUPERFAMILY SSF52540 13 232 6.57E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 Pfam PF04851 Type III restriction enzyme, res subunit 18 232 2.7E-5 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 SUPERFAMILY SSF52540 41 597 2.38E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_10710 217e7f8bf24bc53b2124eaf8cc09a7ab 636 Gene3D G3DSA:3.40.50.300 18 283 2.9E-48 T 13-10-2018 CS348_20910 37fd336e1f6cd48f0e0f6af2e5e1c710 157 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 157 42.891 T 13-10-2018 IPR020914 Uncharacterised protein family UPF0442 CS348_20910 37fd336e1f6cd48f0e0f6af2e5e1c710 157 Pfam PF12821 Threonine/Serine exporter, ThrE 13 147 1.6E-34 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 9.0E-25 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 202 1.4E-16 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 SUPERFAMILY SSF101386 115 202 8.07E-23 T 13-10-2018 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 198 1.7E-29 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 Gene3D G3DSA:1.10.287.1080 113 203 3.2E-27 T 13-10-2018 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 17.756 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.592 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 105 1.5E-30 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 Gene3D G3DSA:3.10.20.400 3 97 2.0E-34 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 CS348_09260 b79f1dc33c7eba595bc5ef9089554bb0 203 SUPERFAMILY SSF141734 6 122 2.22E-46 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 CS348_03675 ddcada151be7d78af96faca724120f18 433 SUPERFAMILY SSF51905 30 400 1.1E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_03675 ddcada151be7d78af96faca724120f18 433 Pfam PF01266 FAD dependent oxidoreductase 31 385 2.3E-38 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_03675 ddcada151be7d78af96faca724120f18 433 Gene3D G3DSA:3.30.9.10 125 346 4.2E-54 T 13-10-2018 CS348_03675 ddcada151be7d78af96faca724120f18 433 Gene3D G3DSA:3.50.50.60 31 386 4.2E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_09200 a85eb3d6f01691d851cbaba26a90d73f 340 Gene3D G3DSA:3.90.25.10 194 329 5.6E-136 T 13-10-2018 CS348_09200 a85eb3d6f01691d851cbaba26a90d73f 340 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 335 8.5E-137 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CS348_09200 a85eb3d6f01691d851cbaba26a90d73f 340 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.7E-60 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_09200 a85eb3d6f01691d851cbaba26a90d73f 340 Gene3D G3DSA:3.40.50.720 3 274 5.6E-136 T 13-10-2018 CS348_09200 a85eb3d6f01691d851cbaba26a90d73f 340 SUPERFAMILY SSF51735 1 337 3.42E-93 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 258 300 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 288 6.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 288 304 6.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 Gene3D G3DSA:1.10.10.60 202 309 4.0E-27 T 13-10-2018 CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 SUPERFAMILY SSF46689 258 305 1.15E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 SMART SM00342 222 304 1.4E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_05650 847df25f1dcf21863380d28d161bfd9a 309 Pfam PF12833 Helix-turn-helix domain 229 305 5.6E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 SUPERFAMILY SSF52540 3 253 5.44E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 SMART SM00382 32 231 4.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 Gene3D G3DSA:3.40.50.300 1 323 2.0E-96 T 13-10-2018 CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 Pfam PF00005 ABC transporter 24 181 6.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 1.0E-18 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_01085 fa60115ad2fffefc1044edcc2d1c58ed 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 317 3.1E-27 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_09835 929b26486279c284e217da00bfa38304 264 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 15 254 4.7E-80 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 CS348_09835 929b26486279c284e217da00bfa38304 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 5.8E-34 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_09835 929b26486279c284e217da00bfa38304 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 5.8E-34 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_09835 929b26486279c284e217da00bfa38304 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 5.8E-34 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_09835 929b26486279c284e217da00bfa38304 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 5.8E-34 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_09835 929b26486279c284e217da00bfa38304 264 Pfam PF01311 Bacterial export proteins, family 1 15 246 2.1E-68 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_19470 be81bc0b492b2cbd3206ed200a37e11d 178 SUPERFAMILY SSF53271 3 174 2.62E-54 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_19470 be81bc0b492b2cbd3206ed200a37e11d 178 Pfam PF00156 Phosphoribosyl transferase domain 13 160 8.2E-25 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CS348_19470 be81bc0b492b2cbd3206ed200a37e11d 178 Gene3D G3DSA:3.40.50.2020 1 176 2.3E-66 T 13-10-2018 CS348_19470 be81bc0b492b2cbd3206ed200a37e11d 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 5.9E-74 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 SUPERFAMILY SSF48498 88 211 1.09E-41 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_14875 7910986f88e544c2b36bce13eadbc204 212 Gene3D G3DSA:1.10.10.60 1 69 7.8E-25 T 13-10-2018 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 8.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 8.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 Gene3D G3DSA:1.10.357.10 70 212 5.0E-54 T 13-10-2018 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 69 2.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 Pfam PF08362 YcdC-like protein, C-terminal region 70 211 8.0E-58 T 13-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 CS348_14875 7910986f88e544c2b36bce13eadbc204 212 SUPERFAMILY SSF46689 13 91 1.75E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 382 3.3E-211 T 13-10-2018 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48|MetaCyc: PWY-801 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 Gene3D G3DSA:3.90.1150.10 248 386 9.1E-53 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 Gene3D G3DSA:3.40.640.10 1 247 2.5E-88 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 PIRSF PIRSF001434 1 384 6.5E-131 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 190 204 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 380 7.0E-141 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CS348_23085 d8bfffb5e5548f661a6af0f9397536f8 386 SUPERFAMILY SSF53383 5 381 1.0E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_19060 5c1346a10466882920e1f0a943cf1187 343 Gene3D G3DSA:3.30.70.260 233 343 3.3E-42 T 13-10-2018 CS348_19060 5c1346a10466882920e1f0a943cf1187 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_19060 5c1346a10466882920e1f0a943cf1187 343 Pfam PF00005 ABC transporter 21 169 5.0E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_19060 5c1346a10466882920e1f0a943cf1187 343 Pfam PF09383 NIL domain 268 339 1.5E-19 T 13-10-2018 IPR018449 NIL domain CS348_19060 5c1346a10466882920e1f0a943cf1187 343 SUPERFAMILY SSF52540 1 240 4.21E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19060 5c1346a10466882920e1f0a943cf1187 343 SUPERFAMILY SSF55021 248 343 1.72E-25 T 13-10-2018 CS348_19060 5c1346a10466882920e1f0a943cf1187 343 SMART SM00382 30 218 1.5E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_19060 5c1346a10466882920e1f0a943cf1187 343 Gene3D G3DSA:3.40.50.300 1 232 2.4E-78 T 13-10-2018 CS348_19060 5c1346a10466882920e1f0a943cf1187 343 SMART SM00930 265 340 6.7E-24 T 13-10-2018 IPR018449 NIL domain CS348_19060 5c1346a10466882920e1f0a943cf1187 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 3.3E-206 T 13-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 Gene3D G3DSA:3.30.470.20 86 433 6.5E-156 T 13-10-2018 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 8.0E-44 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 2.5E-85 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 3.4E-38 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 1.0E-249 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 Gene3D G3DSA:3.40.50.20 1 85 1.5E-34 T 13-10-2018 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 SMART SM00878 336 441 4.7E-65 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 SUPERFAMILY SSF51246 331 444 6.28E-44 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 SUPERFAMILY SSF56059 83 347 1.94E-69 T 13-10-2018 CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 SUPERFAMILY SSF52440 1 113 1.22E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_02315 2f3bcfd8b8a88ac75e347d00b4ddb997 449 Gene3D G3DSA:3.30.1490.20 131 203 6.5E-156 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_09645 ac0c9a4128a330fc5b3375de8c699587 120 Pfam PF06953 Arsenical resistance operon trans-acting repressor ArsD 1 120 1.4E-47 T 13-10-2018 IPR010712 Arsenical-resistance operon trans-acting repressor ArsD GO:0003677|GO:0045892|GO:0046685 CS348_09645 ac0c9a4128a330fc5b3375de8c699587 120 Gene3D G3DSA:3.40.30.10 1 109 1.8E-43 T 13-10-2018 CS348_24480 b55688848facc1aa33f93d797a01d213 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 1.5E-30 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24480 b55688848facc1aa33f93d797a01d213 139 Gene3D G3DSA:1.20.5.440 91 134 4.1E-20 T 13-10-2018 CS348_24480 b55688848facc1aa33f93d797a01d213 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 8.8E-48 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24480 b55688848facc1aa33f93d797a01d213 139 SUPERFAMILY SSF46604 88 137 1.83E-15 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24480 b55688848facc1aa33f93d797a01d213 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 2.7E-13 T 13-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CS348_24480 b55688848facc1aa33f93d797a01d213 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 21.801 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24480 b55688848facc1aa33f93d797a01d213 139 SUPERFAMILY SSF51344 3 86 2.09E-25 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24480 b55688848facc1aa33f93d797a01d213 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 9.0E-41 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24480 b55688848facc1aa33f93d797a01d213 139 Gene3D G3DSA:2.60.15.10 3 90 2.2E-33 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 2.3E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 2.3E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.3E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 Pfam PF01022 Bacterial regulatory protein, arsR family 23 70 3.6E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 SUPERFAMILY SSF46785 11 98 7.59E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 Gene3D G3DSA:1.10.10.10 1 99 6.4E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06095 d8a7083942655dedf8d6f2bd112a628f 99 SMART SM00418 16 95 2.2E-26 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_14370 e37595269c0fd78b39aec7174d47e091 274 Hamap MF_01604 Thiamine kinase [thiK]. 9 270 36.176 T 13-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 CS348_14370 e37595269c0fd78b39aec7174d47e091 274 Pfam PF01636 Phosphotransferase enzyme family 30 233 3.2E-12 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CS348_14370 e37595269c0fd78b39aec7174d47e091 274 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 27 270 9.4E-100 T 13-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 CS348_14370 e37595269c0fd78b39aec7174d47e091 274 SUPERFAMILY SSF56112 29 270 2.19E-27 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_14370 e37595269c0fd78b39aec7174d47e091 274 Gene3D G3DSA:3.90.1200.10 95 273 2.6E-18 T 13-10-2018 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 9.1E-212 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 Gene3D G3DSA:3.30.930.10 109 465 3.2E-110 T 13-10-2018 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 1.2E-12 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 SUPERFAMILY SSF50249 16 101 1.97E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15220 22662786f70498c0fe5730f758f2f62b 466 Gene3D G3DSA:2.40.50.140 3 104 5.6E-21 T 13-10-2018 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.535 T 13-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.8E-14 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.8E-14 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.8E-14 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.8E-14 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 1.8E-81 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_15220 22662786f70498c0fe5730f758f2f62b 466 SUPERFAMILY SSF55681 97 464 3.38E-96 T 13-10-2018 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 SUPERFAMILY SSF50104 3 63 1.14E-17 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 SUPERFAMILY SSF50249 70 128 2.31E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 PIRSF PIRSF005901 2 188 1.5E-66 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 7 61 5.5E-24 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 50.935 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Gene3D G3DSA:2.40.50.140 66 129 1.9E-31 T 13-10-2018 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Gene3D G3DSA:2.40.50.140 130 188 3.3E-28 T 13-10-2018 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 SUPERFAMILY SSF50249 130 187 1.2E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 SMART SM00841 131 186 6.9E-33 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 1.0E-22 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 4.3E-26 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 1.1E-76 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 Gene3D G3DSA:2.30.30.30 1 65 9.9E-28 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CS348_21945 e9a847ae5c8b7dcef77032adab7ae248 188 SMART SM01185 69 123 1.6E-26 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 2.1E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 2.1E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 2.1E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 SUPERFAMILY SSF46955 2 121 3.15E-35 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 SMART SM00422 2 71 1.1E-31 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 Gene3D G3DSA:1.10.1660.10 1 128 6.9E-37 T 13-10-2018 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 Pfam PF13411 MerR HTH family regulatory protein 2 69 6.9E-21 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_02150 5d4d76dc4cbf59c2b5d5bbf3f05a138f 141 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 8.5E-64 T 13-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 SUPERFAMILY SSF56784 10 209 4.0E-46 T 13-10-2018 IPR036412 HAD-like superfamily CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 4.1E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 101 114 4.1E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 131 147 4.1E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 149 169 4.1E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 56 187 5.5E-19 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 12 169 1.2E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 Gene3D G3DSA:1.10.150.240 24 86 2.9E-53 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 Gene3D G3DSA:3.40.50.1000 10 206 2.9E-53 T 13-10-2018 IPR023214 HAD superfamily CS348_07975 620988d5dbaa909dfb900fe9f2a2ed9f 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 187 8.0E-26 T 13-10-2018 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 SMART SM00926 49 104 1.6E-14 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Pfam PF01568 Molydopterin dinucleotide binding domain 633 722 3.1E-18 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Gene3D G3DSA:3.40.228.10 184 612 1.6E-126 T 13-10-2018 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Gene3D G3DSA:3.30.2070.10 496 584 1.6E-126 T 13-10-2018 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Pfam PF00384 Molybdopterin oxidoreductase 107 536 8.4E-63 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 50 104 2.8E-10 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Gene3D G3DSA:2.40.40.20 614 737 1.0E-26 T 13-10-2018 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 8 30 1.3E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_17185 10a378227f7daf342f4677966fc71a3c 759 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 670 697 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 SUPERFAMILY SSF50692 597 711 9.49E-30 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Gene3D G3DSA:3.40.50.740 117 545 1.6E-126 T 13-10-2018 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 SUPERFAMILY SSF53706 50 629 5.1E-154 T 13-10-2018 CS348_17185 10a378227f7daf342f4677966fc71a3c 759 Gene3D G3DSA:2.20.25.90 43 109 7.4E-10 T 13-10-2018 CS348_06705 4ebb564de8d6b482fd8c82c447ba5218 211 Gene3D G3DSA:1.20.1440.100 20 93 1.3E-13 T 13-10-2018 CS348_06705 4ebb564de8d6b482fd8c82c447ba5218 211 Pfam PF12710 haloacid dehalogenase-like hydrolase 9 192 3.3E-11 T 13-10-2018 CS348_06705 4ebb564de8d6b482fd8c82c447ba5218 211 Gene3D G3DSA:3.40.50.1000 9 209 1.3E-13 T 13-10-2018 IPR023214 HAD superfamily CS348_06705 4ebb564de8d6b482fd8c82c447ba5218 211 SUPERFAMILY SSF56784 6 154 2.34E-7 T 13-10-2018 IPR036412 HAD-like superfamily CS348_06705 4ebb564de8d6b482fd8c82c447ba5218 211 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 3 211 1.3E-131 T 13-10-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CS348_01245 192e72719cec531298f7dae4680998b0 347 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 5 347 8.6E-133 T 13-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 CS348_01245 192e72719cec531298f7dae4680998b0 347 SUPERFAMILY SSF53774 24 346 1.24E-98 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 PIRSF PIRSF001220 21 347 8.4E-84 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 PRINTS PR00139 Asparaginase/glutaminase family signature 107 125 9.0E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 PRINTS PR00139 Asparaginase/glutaminase family signature 286 304 9.0E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 PRINTS PR00139 Asparaginase/glutaminase family signature 27 38 9.0E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 29 37 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 CS348_01245 192e72719cec531298f7dae4680998b0 347 Gene3D G3DSA:3.40.50.1170 21 238 1.1E-88 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 PIRSF PIRSF500176 23 347 2.9E-70 T 13-10-2018 CS348_01245 192e72719cec531298f7dae4680998b0 347 Pfam PF00710 Asparaginase, N-terminal 26 218 4.0E-59 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 SMART SM00870 26 341 1.2E-132 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 Gene3D G3DSA:3.40.50.40 239 347 5.8E-31 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 CS348_01245 192e72719cec531298f7dae4680998b0 347 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 108 118 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 CS348_00580 527e433349d66445e6c1224986f9ef24 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.857 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_00580 527e433349d66445e6c1224986f9ef24 55 Pfam PF00471 Ribosomal protein L33 7 53 8.8E-19 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_00580 527e433349d66445e6c1224986f9ef24 55 SUPERFAMILY SSF57829 1 53 4.27E-20 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CS348_00580 527e433349d66445e6c1224986f9ef24 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 3.9E-28 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_00580 527e433349d66445e6c1224986f9ef24 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_00580 527e433349d66445e6c1224986f9ef24 55 Gene3D G3DSA:2.20.28.120 1 55 2.9E-31 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 1.1E-91 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 Gene3D G3DSA:3.10.20.30 1 106 2.6E-34 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 Gene3D G3DSA:1.10.1060.10 107 238 1.4E-58 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 SUPERFAMILY SSF46548 107 236 1.74E-39 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 SUPERFAMILY SSF54292 1 106 6.2E-30 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 2.7E-10 T 13-10-2018 CS348_16640 2d82dd21d45622da01b12a0d712f4180 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 9.3E-31 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Gene3D G3DSA:3.40.1140.10 1382 1468 2.8E-38 T 13-10-2018 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Pfam PF16330 MukB hinge domain 645 810 1.1E-73 T 13-10-2018 IPR032520 MukB, hinge domain CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.288 T 13-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Pfam PF04310 MukB N-terminal 2 227 8.4E-125 T 13-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 PIRSF PIRSF005246 1 1486 0.0 T 13-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Gene3D G3DSA:1.20.1060.30 667 778 6.7E-145 T 13-10-2018 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 SUPERFAMILY SSF52540 21 1433 6.2E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15255 f900803f842f612189f6f5a7b223b601 1488 SUPERFAMILY SSF52540 22 224 4.04E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 7.3E-15 T 13-10-2018 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Gene3D G3DSA:3.40.1140.10 1 227 1.8E-102 T 13-10-2018 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Gene3D G3DSA:1.20.58.850 620 830 6.7E-145 T 13-10-2018 CS348_15255 f900803f842f612189f6f5a7b223b601 1488 Gene3D G3DSA:1.20.58.850 581 852 6.7E-145 T 13-10-2018 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 267 4.7E-103 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 Gene3D G3DSA:3.40.50.150 7 238 4.5E-91 T 13-10-2018 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 3.1E-19 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 3.1E-19 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 3.1E-19 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 3.1E-19 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 PIRSF PIRSF000398 1 271 3.5E-68 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 SUPERFAMILY SSF53335 5 267 1.96E-77 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 251 1.7E-73 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_01765 dbe81196e1f74e4ccfa22e6e17463035 278 Gene3D G3DSA:1.10.1020.10 57 156 4.5E-91 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 CS348_01315 c07720b52925622bff94ebad147712d8 133 TIGRFAM TIGR02793 nikR: nickel-responsive transcriptional regulator NikR 2 130 2.1E-67 T 13-10-2018 IPR014160 Nickel-responsive transcriptional regulator NikR, proteobacteria GO:0010045|GO:0016151 CS348_01315 c07720b52925622bff94ebad147712d8 133 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 42 1.1E-11 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 CS348_01315 c07720b52925622bff94ebad147712d8 133 Gene3D G3DSA:1.10.1220.10 1 47 7.5E-23 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CS348_01315 c07720b52925622bff94ebad147712d8 133 Gene3D G3DSA:3.30.70.1150 49 133 6.2E-38 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CS348_01315 c07720b52925622bff94ebad147712d8 133 Pfam PF08753 NikR C terminal nickel binding domain 54 127 9.9E-28 T 13-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal CS348_01315 c07720b52925622bff94ebad147712d8 133 SUPERFAMILY SSF55021 53 132 2.52E-26 T 13-10-2018 CS348_01315 c07720b52925622bff94ebad147712d8 133 SUPERFAMILY SSF47598 1 46 5.19E-12 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_01315 c07720b52925622bff94ebad147712d8 133 Hamap MF_00476 Nickel-responsive regulator [nikR]. 1 131 27.876 T 13-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 SUPERFAMILY SSF69336 1211 1465 4.32E-87 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Pfam PF01645 Conserved region in glutamate synthase 793 1156 4.9E-158 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Pfam PF01493 GXGXG motif 1236 1419 7.9E-75 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 SUPERFAMILY SSF51395 434 1191 1.79E-251 T 13-10-2018 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 SUPERFAMILY SSF56235 12 429 7.72E-150 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Pfam PF00310 Glutamine amidotransferases class-II 12 425 2.9E-176 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Gene3D G3DSA:2.160.20.60 1196 1468 1.4E-101 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Gene3D G3DSA:3.60.20.10 12 545 0.0 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Gene3D G3DSA:3.20.20.70 430 792 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Pfam PF04898 Glutamate synthase central domain 457 737 1.5E-105 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 CS348_02575 0d8f0bc1ff2d6fec5dd52311d4af4a2b 1486 Gene3D G3DSA:3.20.20.70 483 1171 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 Gene3D G3DSA:1.20.120.530 101 230 1.4E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 77 2.0E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 SMART SM00895 106 227 1.7E-19 T 13-10-2018 IPR011711 GntR, C-terminal CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 SUPERFAMILY SSF46785 10 81 2.47E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 SUPERFAMILY SSF48008 106 225 3.4E-21 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 SMART SM00345 18 77 1.2E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 Pfam PF07729 FCD domain 108 225 9.1E-22 T 13-10-2018 IPR011711 GntR, C-terminal CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 Gene3D G3DSA:1.10.10.10 6 82 2.9E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 2.4E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_24360 755fdd6b7882112020c2ffbae60d2991 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 2.4E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_10220 c333997b1fb00c4cfa94efdf67068182 131 Pfam PF01124 MAPEG family 3 120 4.5E-26 T 13-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein CS348_10220 c333997b1fb00c4cfa94efdf67068182 131 Gene3D G3DSA:1.20.120.550 1 129 1.5E-25 T 13-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily CS348_10220 c333997b1fb00c4cfa94efdf67068182 131 SUPERFAMILY SSF161084 4 127 1.03E-30 T 13-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily CS348_11930 1a5c0fd3b4f4fb9f3b5e28fd0a565bac 337 Gene3D G3DSA:1.50.10.150 6 321 4.1E-88 T 13-10-2018 IPR038665 Voltage-dependent anion channel superfamily CS348_11930 1a5c0fd3b4f4fb9f3b5e28fd0a565bac 337 TIGRFAM TIGR00816 tdt: C4-dicarboxylate transporter/malic acid transport protein 13 316 1.4E-103 T 13-10-2018 IPR011552 Tellurite resistance protein TehA/malic acid transport protein GO:0016021 CS348_11930 1a5c0fd3b4f4fb9f3b5e28fd0a565bac 337 Pfam PF03595 Voltage-dependent anion channel 12 309 5.7E-40 T 13-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 CS348_21630 124bcb71e0e745a2bce343a4aeb5c3c2 220 Gene3D G3DSA:1.10.287.460 19 83 1.7E-18 T 13-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 CS348_21630 124bcb71e0e745a2bce343a4aeb5c3c2 220 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 16 122 3.9E-22 T 13-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 CS348_21630 124bcb71e0e745a2bce343a4aeb5c3c2 220 SUPERFAMILY SSF54534 22 219 3.73E-55 T 13-10-2018 CS348_21630 124bcb71e0e745a2bce343a4aeb5c3c2 220 Gene3D G3DSA:3.10.50.40 84 220 1.0E-50 T 13-10-2018 CS348_21630 124bcb71e0e745a2bce343a4aeb5c3c2 220 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 131 217 1.5E-27 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Gene3D G3DSA:1.10.150.20 67 142 3.1E-30 T 13-10-2018 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Gene3D G3DSA:1.10.8.10 156 203 5.8E-26 T 13-10-2018 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 SUPERFAMILY SSF50249 2 63 3.71E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 SUPERFAMILY SSF47781 66 137 1.25E-21 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 7.0E-72 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 SMART SM00278 108 127 0.05 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 SMART SM00278 73 92 1.3 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Gene3D G3DSA:2.40.50.140 1 66 1.4E-27 T 13-10-2018 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 203 32.433 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 SUPERFAMILY SSF46929 157 201 1.57E-10 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Pfam PF07499 RuvA, C-terminal domain 159 201 9.0E-15 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Pfam PF01330 RuvA N terminal domain 2 62 3.2E-19 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 CS348_10265 6343f137ab8a32fd0a8b36f959fb5843 203 Pfam PF14520 Helix-hairpin-helix domain 72 130 1.1E-15 T 13-10-2018 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 Gene3D G3DSA:3.20.20.10 33 279 3.4E-151 T 13-10-2018 IPR029066 PLP-binding barrel CS348_04930 7f5407df779ef75532302f17ef1421d1 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CS348_04930 7f5407df779ef75532302f17ef1421d1 420 SUPERFAMILY SSF50621 250 419 2.93E-58 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 9 418 8.9E-139 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 Gene3D G3DSA:2.40.37.10 22 416 3.4E-151 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 9.3E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 9.3E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 9.3E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 9.3E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 9.3E-20 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 39.347 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 33 275 4.0E-64 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 8.6E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 8.6E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 8.6E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 8.6E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 376 5.7E-24 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CS348_04930 7f5407df779ef75532302f17ef1421d1 420 SUPERFAMILY SSF51419 25 276 7.85E-57 T 13-10-2018 IPR029066 PLP-binding barrel CS348_04930 7f5407df779ef75532302f17ef1421d1 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 SUPERFAMILY SSF51556 68 367 4.33E-76 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 Pfam PF01979 Amidohydrolase family 65 384 9.4E-14 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 SUPERFAMILY SSF51338 8 406 1.77E-30 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 TIGRFAM TIGR01224 hutI: imidazolonepropionase 31 406 1.6E-136 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 Gene3D G3DSA:3.20.20.140 69 367 6.6E-152 T 13-10-2018 CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 Gene3D G3DSA:2.30.40.10 13 404 6.6E-152 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_16400 2af9819380b5dc40ef724752fdb25b19 407 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 407 39.294 T 13-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_05880 bc3ec235f558cb7b968d8cbbb1251d62 359 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 61 353 3.4E-127 T 13-10-2018 IPR011757 Lytic transglycosylase MltB CS348_05880 bc3ec235f558cb7b968d8cbbb1251d62 359 SUPERFAMILY SSF53955 46 355 3.94E-100 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_05880 bc3ec235f558cb7b968d8cbbb1251d62 359 Gene3D G3DSA:1.10.530.10 99 353 9.2E-120 T 13-10-2018 CS348_05880 bc3ec235f558cb7b968d8cbbb1251d62 359 Gene3D G3DSA:1.10.8.350 60 233 9.2E-120 T 13-10-2018 CS348_05880 bc3ec235f558cb7b968d8cbbb1251d62 359 Pfam PF13406 Transglycosylase SLT domain 57 351 5.4E-92 T 13-10-2018 IPR031304 Transglycosylase SLT domain 2 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 204 223 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 293 319 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 167 186 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 149 163 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 248 267 1.1E-96 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 Pfam PF13416 Bacterial extracellular solute-binding protein 42 312 8.5E-40 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 PIRSF PIRSF019574 1 348 1.3E-135 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 Gene3D G3DSA:3.40.190.10 31 315 4.3E-128 T 13-10-2018 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 Gene3D G3DSA:3.40.190.10 132 321 4.3E-128 T 13-10-2018 CS348_14300 75c0efdd034e2c84d65ac12aab5b82ab 348 SUPERFAMILY SSF53850 27 345 1.09E-97 T 13-10-2018 CS348_20560 a402af5f8d3ee569a5e0de02c827e131 294 Pfam PF06995 Phage P2 GpU 6 122 8.1E-33 T 13-10-2018 IPR009734 Myoviridae, GpU CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Pfam PF00271 Helicase conserved C-terminal domain 227 336 1.6E-27 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Pfam PF03880 DbpA RNA binding domain 384 454 6.9E-22 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 SUPERFAMILY SSF52540 72 349 1.05E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Gene3D G3DSA:3.40.50.300 212 373 2.7E-46 T 13-10-2018 CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Gene3D G3DSA:3.40.50.300 3 209 6.0E-67 T 13-10-2018 CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Pfam PF00270 DEAD/DEAH box helicase 27 191 5.0E-42 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 SMART SM00487 22 219 5.2E-54 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 151 159 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 SMART SM00490 255 336 8.8E-28 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 5 457 68.677 T 13-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 CS348_11680 9f601210ca075bf2d6c1de2c0aff81b2 457 Gene3D G3DSA:3.30.70.330 383 457 2.7E-19 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CS348_15615 5c4cd4475e3948fd040ed1c83c1c70d5 177 Pfam PF06890 Bacteriophage Mu Gp45 protein 11 159 4.5E-49 T 13-10-2018 IPR014462 Phage-associated protein Gp45 CS348_15615 5c4cd4475e3948fd040ed1c83c1c70d5 177 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 6 123 1.7E-17 T 13-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 CS348_15615 5c4cd4475e3948fd040ed1c83c1c70d5 177 PIRSF PIRSF012337 2 176 6.5E-46 T 13-10-2018 IPR014462 Phage-associated protein Gp45 CS348_00365 21935e51c74a9e464aa0155756238cad 247 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 7 244 5.7E-106 T 13-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_00365 21935e51c74a9e464aa0155756238cad 247 Gene3D G3DSA:3.20.20.70 1 247 2.2E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00365 21935e51c74a9e464aa0155756238cad 247 SUPERFAMILY SSF51569 112 227 9.16E-5 T 13-10-2018 CS348_00365 21935e51c74a9e464aa0155756238cad 247 Pfam PF07071 KDGP aldolase 7 226 1.5E-94 T 13-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_18865 3ef182fbc08a2fce4d60e0764fd0914f 403 Gene3D G3DSA:2.60.40.1120 23 118 3.3E-9 T 13-10-2018 CS348_18865 3ef182fbc08a2fce4d60e0764fd0914f 403 Pfam PF08400 Prophage tail fibre N-terminal 22 144 6.5E-21 T 13-10-2018 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal CS348_18865 3ef182fbc08a2fce4d60e0764fd0914f 403 SUPERFAMILY SSF49464 23 97 1.92E-9 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily CS348_18865 3ef182fbc08a2fce4d60e0764fd0914f 403 Pfam PF01391 Collagen triple helix repeat (20 copies) 213 260 6.4E-9 T 13-10-2018 IPR008160 Collagen triple helix repeat CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 SUPERFAMILY SSF53822 68 338 5.3E-92 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 Gene3D G3DSA:3.40.50.2300 168 297 1.7E-83 T 13-10-2018 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 SUPERFAMILY SSF47413 9 67 1.03E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 Gene3D G3DSA:1.10.260.40 1 67 1.0E-24 T 13-10-2018 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 SMART SM00354 9 79 2.2E-28 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 Gene3D G3DSA:3.40.50.2300 69 314 1.7E-83 T 13-10-2018 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 13-10-2018 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 Pfam PF13377 Periplasmic binding protein-like domain 177 337 2.0E-44 T 13-10-2018 CS348_23115 f181ebda3537423d4de8dcdb9c83d08e 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 56 3.9E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 Gene3D G3DSA:1.10.1270.10 8 108 1.7E-40 T 13-10-2018 IPR038116 TrpR-like superfamily CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 Hamap MF_00475 Trp operon repressor [trpR]. 15 108 24.214 T 13-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 Pfam PF01371 Trp repressor protein 17 102 2.3E-28 T 13-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 10 101 1.0E-39 T 13-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 TIGRFAM TIGR01321 TrpR: trp operon repressor 12 103 9.4E-39 T 13-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 SUPERFAMILY SSF48295 5 105 3.3E-29 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CS348_20450 5cd1e29cbefc0e2d8e06c2c9ce4f2450 108 PIRSF PIRSF003196 1 108 2.3E-40 T 13-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 SMART SM00382 325 520 0.22 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 SMART SM00382 7 238 1.1 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 TIGRFAM TIGR04291 arsen_driv_ArsA: arsenical pump-driving ATPase 7 571 1.5E-272 T 13-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 Gene3D G3DSA:3.40.50.300 2 295 5.6E-86 T 13-10-2018 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 SUPERFAMILY SSF52540 323 547 3.99E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 Gene3D G3DSA:3.40.50.300 309 582 1.7E-67 T 13-10-2018 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 SUPERFAMILY SSF52540 3 291 1.82E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 Pfam PF02374 Anion-transporting ATPase 328 472 3.4E-31 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 Pfam PF02374 Anion-transporting ATPase 485 583 4.4E-5 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 Pfam PF02374 Anion-transporting ATPase 10 292 1.2E-78 T 13-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 12 292 4.3E-83 T 13-10-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 CS348_09650 8939ae77b64b2f7f41acdacd49332698 586 PIRSF PIRSF001327 1 585 8.3E-260 T 13-10-2018 IPR027541 Arsenical pump-driving ATPase GO:0005524|GO:0015446|GO:0016887|GO:0071722 MetaCyc: PWY-4621 CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 SMART SM00347 24 122 7.3E-17 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 ProSitePatterns PS01117 MarR-type HTH domain signature. 61 95 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 Pfam PF01047 MarR family 29 85 7.0E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 SUPERFAMILY SSF46785 3 133 4.29E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 Gene3D G3DSA:1.10.10.10 1 134 2.6E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 5.3E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 46 62 5.3E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 5.3E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05430 b873028d5195a4a0f0cf33dda11d940e 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 5.3E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 Gene3D G3DSA:3.20.80.10 127 285 4.6E-34 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 Pfam PF12833 Helix-turn-helix domain 31 106 3.6E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 Gene3D G3DSA:1.10.10.60 2 58 1.4E-15 T 13-10-2018 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 Pfam PF06445 GyrI-like small molecule binding domain 128 284 2.1E-17 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 89 105 2.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 74 89 2.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 SUPERFAMILY SSF55136 159 284 3.66E-26 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 SUPERFAMILY SSF46689 59 109 9.86E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 59 101 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 SUPERFAMILY SSF46689 7 57 6.72E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 SMART SM00342 22 105 9.6E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 Gene3D G3DSA:1.10.10.60 59 122 3.4E-17 T 13-10-2018 CS348_11585 57a4640a7b80c8105a6175f3f2ca2eff 285 SMART SM00871 127 285 0.0013 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CS348_05565 141316e0d47286ecd44095fbe07d0426 303 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 227 296 3.7E-13 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) CS348_05565 141316e0d47286ecd44095fbe07d0426 303 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 30 295 5.6E-58 T 13-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 CS348_05565 141316e0d47286ecd44095fbe07d0426 303 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 166 176 4.2E-34 T 13-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 CS348_05565 141316e0d47286ecd44095fbe07d0426 303 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 228 240 4.2E-34 T 13-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 CS348_05565 141316e0d47286ecd44095fbe07d0426 303 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 272 289 4.2E-34 T 13-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 CS348_05565 141316e0d47286ecd44095fbe07d0426 303 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 118 131 4.2E-34 T 13-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 CS348_05565 141316e0d47286ecd44095fbe07d0426 303 SUPERFAMILY SSF101801 226 300 9.94E-15 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_05565 141316e0d47286ecd44095fbe07d0426 303 Gene3D G3DSA:2.30.330.10 214 299 2.2E-30 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_14555 8ebaee6e50e0aca1301aceeaef4b7a14 251 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CS348_14555 8ebaee6e50e0aca1301aceeaef4b7a14 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 170 247 3.8E-22 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CS348_14555 8ebaee6e50e0aca1301aceeaef4b7a14 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 8.4E-31 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CS348_14555 8ebaee6e50e0aca1301aceeaef4b7a14 251 Pfam PF00460 Flagella basal body rod protein 5 35 2.1E-10 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CS348_14555 8ebaee6e50e0aca1301aceeaef4b7a14 251 SUPERFAMILY SSF117143 77 209 1.31E-16 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Gene3D G3DSA:3.40.1030.10 70 322 7.3E-131 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 PIRSF PIRSF000478 1 439 3.8E-151 T 13-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 2.3E-234 T 13-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 350 422 7.9E-24 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 46.875 T 13-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 9.2E-19 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Gene3D G3DSA:3.90.1170.30 337 433 3.1E-35 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 SUPERFAMILY SSF54680 337 439 3.92E-31 T 13-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 1.3E-167 T 13-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 13-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 SMART SM00941 350 424 9.1E-28 T 13-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Gene3D G3DSA:1.20.970.10 7 195 7.3E-131 T 13-10-2018 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 SUPERFAMILY SSF52418 74 334 1.83E-87 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 2.2E-52 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_20795 d6b0d34725385ffc463630ec4073b117 440 SUPERFAMILY SSF47648 3 70 1.3E-21 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 SMART SM00420 6 58 1.0E-22 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-5 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-5 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 Hamap MF_01563 HTH-type transcriptional regulator UlaR [ulaR]. 1 251 69.507 T 13-10-2018 IPR023711 Transcription regulator HTH, UlaR GO:0005737|GO:0045892 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 SUPERFAMILY SSF46785 5 60 6.06E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 Pfam PF00455 DeoR C terminal sensor domain 76 230 8.2E-36 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 62 1.5E-19 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 SMART SM01134 74 232 1.2E-36 T 13-10-2018 CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 SUPERFAMILY SSF100950 75 233 1.67E-22 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_21715 74eac38739c2532dafd85612b2cae2e6 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_07245 381356b56ac60cb66a547ac2dfae76ba 267 Pfam PF01923 Cobalamin adenosyltransferase 95 246 2.1E-13 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_07245 381356b56ac60cb66a547ac2dfae76ba 267 SUPERFAMILY SSF89028 93 249 1.14E-13 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_07245 381356b56ac60cb66a547ac2dfae76ba 267 PIRSF PIRSF012294 1 255 7.1E-112 T 13-10-2018 IPR009194 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT-type GO:0005524|GO:0006580|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CS348_07245 381356b56ac60cb66a547ac2dfae76ba 267 Gene3D G3DSA:1.20.1200.10 94 254 2.6E-6 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_06210 1da3c854287d4f47445fe9c05b35af37 414 Pfam PF00756 Putative esterase 189 410 6.3E-46 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CS348_06210 1da3c854287d4f47445fe9c05b35af37 414 Gene3D G3DSA:3.40.50.1820 161 413 6.1E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_06210 1da3c854287d4f47445fe9c05b35af37 414 Pfam PF11806 Domain of unknown function (DUF3327) 56 170 1.0E-28 T 13-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 CS348_06210 1da3c854287d4f47445fe9c05b35af37 414 Gene3D G3DSA:2.60.40.10 17 158 1.5E-22 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06210 1da3c854287d4f47445fe9c05b35af37 414 SUPERFAMILY SSF81296 26 165 2.94E-32 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_06210 1da3c854287d4f47445fe9c05b35af37 414 SUPERFAMILY SSF53474 179 412 2.94E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 8.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 8.6E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 Gene3D G3DSA:3.40.1410.10 93 247 3.9E-38 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 87 3.1E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 Gene3D G3DSA:1.10.10.10 13 88 2.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 SMART SM00345 28 87 2.0E-15 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 SUPERFAMILY SSF64288 75 246 8.48E-40 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 Pfam PF07702 UTRA domain 108 242 2.1E-35 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 SUPERFAMILY SSF46785 18 90 1.16E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08925 34dbdf7e762326049e7f68e5dd140d49 248 SMART SM00866 107 243 7.4E-32 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_11600 2fba50ab0e2106ac07948e6645858c1c 660 Pfam PF11924 Inverse autotransporter, beta-domain 40 321 3.2E-83 T 13-10-2018 IPR024519 Inverse autotransporter, beta-domain CS348_11600 2fba50ab0e2106ac07948e6645858c1c 660 Gene3D G3DSA:2.40.160.160 87 328 3.1E-74 T 13-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily CS348_11600 2fba50ab0e2106ac07948e6645858c1c 660 PRINTS PR01369 Intimin signature 356 368 8.7E-5 T 13-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 CS348_11600 2fba50ab0e2106ac07948e6645858c1c 660 PRINTS PR01369 Intimin signature 202 221 8.7E-5 T 13-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 CS348_11600 2fba50ab0e2106ac07948e6645858c1c 660 PRINTS PR01369 Intimin signature 174 189 8.7E-5 T 13-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 105 140 2.3E-14 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 13 49 1.0E-16 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 145 168 0.095 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 62 98 5.9E-16 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 Gene3D G3DSA:3.30.65.10 3 54 9.6E-11 T 13-10-2018 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 Gene3D G3DSA:3.30.65.10 55 98 2.0E-9 T 13-10-2018 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 SUPERFAMILY SSF57783 61 97 8.33E-13 T 13-10-2018 CS348_02195 78ea2e876ec0c8670f913513c751d1ce 180 SUPERFAMILY SSF57783 12 50 7.65E-14 T 13-10-2018 CS348_16925 0e9d9becd05b7e3e88f528d3514498a2 512 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 495 24.008 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 CS348_16925 0e9d9becd05b7e3e88f528d3514498a2 512 Pfam PF00795 Carbon-nitrogen hydrolase 224 478 3.7E-41 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CS348_16925 0e9d9becd05b7e3e88f528d3514498a2 512 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 458 9.9E-118 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 CS348_16925 0e9d9becd05b7e3e88f528d3514498a2 512 SUPERFAMILY SSF56317 218 490 3.66E-37 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_16925 0e9d9becd05b7e3e88f528d3514498a2 512 Gene3D G3DSA:3.60.110.10 217 479 5.1E-8 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 188 628 1.5E-231 T 13-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Gene3D G3DSA:2.40.50.100 205 283 1.2E-20 T 13-10-2018 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Gene3D G3DSA:2.40.50.100 1 78 3.3E-22 T 13-10-2018 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Gene3D G3DSA:2.40.50.100 104 182 7.1E-22 T 13-10-2018 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 SUPERFAMILY SSF47005 319 364 2.09E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Gene3D G3DSA:4.10.320.10 325 370 2.0E-22 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 SUPERFAMILY SSF51230 105 196 3.8E-24 T 13-10-2018 IPR011053 Single hybrid motif CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 SUPERFAMILY SSF51230 1 93 4.19E-23 T 13-10-2018 IPR011053 Single hybrid motif CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Pfam PF00364 Biotin-requiring enzyme 207 276 5.8E-22 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Pfam PF00364 Biotin-requiring enzyme 4 73 2.8E-22 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Pfam PF00364 Biotin-requiring enzyme 107 176 7.4E-23 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Pfam PF02817 e3 binding domain 325 360 2.1E-15 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 228 257 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Gene3D G3DSA:3.30.559.10 380 628 1.9E-100 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 128 157 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 SUPERFAMILY SSF52777 386 627 9.78E-81 T 13-10-2018 CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 SUPERFAMILY SSF51230 205 297 3.14E-23 T 13-10-2018 IPR011053 Single hybrid motif CS348_19550 ea0946acbb096e09fb5c3880edbca38f 628 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 397 627 1.1E-79 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Gene3D G3DSA:2.60.40.2610 654 744 3.7E-11 T 13-10-2018 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Gene3D G3DSA:2.60.40.3110 257 345 2.4E-27 T 13-10-2018 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Pfam PF13953 PapC C-terminal domain 750 807 1.7E-9 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Pfam PF00577 Outer membrane usher protein 185 738 9.6E-166 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Gene3D G3DSA:3.10.20.410 23 144 3.6E-23 T 13-10-2018 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Gene3D G3DSA:2.60.40.2070 748 824 1.9E-21 T 13-10-2018 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 SUPERFAMILY SSF141729 24 144 1.06E-27 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_04135 94647c483a6ec24096ec147bcadc4e5c 824 Pfam PF13954 PapC N-terminal domain 25 167 1.7E-36 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_13270 3d5d53ea3f4207e776f59952eabb0c09 119 SUPERFAMILY SSF47413 1 119 5.06E-43 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_13270 3d5d53ea3f4207e776f59952eabb0c09 119 Pfam PF08965 Domain of unknown function (DUF1870) 2 119 1.2E-54 T 13-10-2018 IPR015060 Protein of unknown function DUF1870 CS348_13270 3d5d53ea3f4207e776f59952eabb0c09 119 Gene3D G3DSA:1.10.3100.10 1 119 8.8E-49 T 13-10-2018 IPR027910 YdiL domain superfamily CS348_16570 7ded96ba962342b2858efe3740d9936e 174 Gene3D G3DSA:3.30.1330.60 45 174 4.0E-47 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_16570 7ded96ba962342b2858efe3740d9936e 174 Pfam PF00691 OmpA family 73 168 1.3E-21 T 13-10-2018 IPR006665 OmpA-like domain CS348_16570 7ded96ba962342b2858efe3740d9936e 174 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 174 32.042 T 13-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 CS348_16570 7ded96ba962342b2858efe3740d9936e 174 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 72 174 1.7E-46 T 13-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 CS348_16570 7ded96ba962342b2858efe3740d9936e 174 ProSitePatterns PS01068 OmpA-like domain. 106 150 - T 13-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 CS348_16570 7ded96ba962342b2858efe3740d9936e 174 SUPERFAMILY SSF103088 61 173 1.09E-34 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_16570 7ded96ba962342b2858efe3740d9936e 174 PRINTS PR01021 OMPA domain signature 104 119 8.5E-17 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_16570 7ded96ba962342b2858efe3740d9936e 174 PRINTS PR01021 OMPA domain signature 74 96 8.5E-17 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_16570 7ded96ba962342b2858efe3740d9936e 174 PRINTS PR01021 OMPA domain signature 119 135 8.5E-17 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_02305 1676163640ea80a9653fd6268d24a834 483 Pfam PF00474 Sodium:solute symporter family 36 432 8.3E-138 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_02305 1676163640ea80a9653fd6268d24a834 483 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 5.5E-112 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_02305 1676163640ea80a9653fd6268d24a834 483 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 471 9.9E-228 T 13-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 CS348_02305 1676163640ea80a9653fd6268d24a834 483 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 414 434 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site CS348_02305 1676163640ea80a9653fd6268d24a834 483 Gene3D G3DSA:1.20.1730.10 25 481 2.7E-80 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CS348_02305 1676163640ea80a9653fd6268d24a834 483 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 Gene3D G3DSA:3.40.50.12740 2 210 1.7E-60 T 13-10-2018 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 SUPERFAMILY SSF46894 147 210 2.55E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 5.7E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 SUPERFAMILY SSF52172 3 159 5.86E-34 T 13-10-2018 IPR011006 CheY-like superfamily CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 Pfam PF00072 Response regulator receiver domain 4 115 5.5E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 7.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 7.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 7.5E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 SMART SM00421 147 204 2.4E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10000 ffce5cb4b3b4e44563eed26dc7f11497 218 SMART SM00448 2 115 4.3E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.826 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 Pfam PF00281 Ribosomal protein L5 24 80 1.1E-28 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 Gene3D G3DSA:3.30.1440.10 1 179 1.8E-81 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 5.4E-41 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 SUPERFAMILY SSF55282 4 179 1.88E-79 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 13-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02070 dd56b1a1b3dec92037ad5913650793f9 179 PIRSF PIRSF002161 1 179 4.3E-67 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 Hamap MF_01418 Agmatinase [speB]. 1 304 70.081 T 13-10-2018 IPR023694 Agmatinase GO:0008783|GO:0009446|GO:0030145 KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305 CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 PIRSF PIRSF036979 12 304 2.2E-101 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 ProSitePatterns PS01053 Arginase family signature. 228 249 - T 13-10-2018 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 Gene3D G3DSA:3.40.800.10 2 306 5.8E-102 T 13-10-2018 CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 TIGRFAM TIGR01230 agmatinase: agmatinase 22 299 6.6E-117 T 13-10-2018 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 SUPERFAMILY SSF52768 13 301 1.67E-91 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily CS348_04530 c7e97e1ef7cf40504f8d095ea1d87cc5 306 Pfam PF00491 Arginase family 34 297 7.5E-86 T 13-10-2018 IPR006035 Ureohydrolase GO:0046872 CS348_12320 39fdd784471d05c6788817c77c682bf4 428 Pfam PF07690 Major Facilitator Superfamily 14 378 5.7E-60 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12320 39fdd784471d05c6788817c77c682bf4 428 Gene3D G3DSA:1.20.1250.20 1 193 1.7E-50 T 13-10-2018 CS348_12320 39fdd784471d05c6788817c77c682bf4 428 PIRSF PIRSF002808 2 426 9.4E-43 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_12320 39fdd784471d05c6788817c77c682bf4 428 Gene3D G3DSA:1.20.1250.20 220 422 2.3E-33 T 13-10-2018 CS348_12320 39fdd784471d05c6788817c77c682bf4 428 SUPERFAMILY SSF103473 4 414 5.1E-88 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00100 249020c4fcfb0802aa742a581e96f649 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 4.0E-82 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00100 249020c4fcfb0802aa742a581e96f649 245 Pfam PF01578 Cytochrome C assembly protein 13 184 1.6E-30 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 4.0E-82 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 3.1E-62 T 13-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08405 249020c4fcfb0802aa742a581e96f649 245 Pfam PF01578 Cytochrome C assembly protein 13 184 1.6E-30 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 66.122 T 13-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 Gene3D G3DSA:3.40.50.720 4 328 1.1E-136 T 13-10-2018 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 PIRSF PIRSF000149 1 337 2.8E-135 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 328 1.3E-111 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 SMART SM00846 3 155 3.6E-82 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 5.9E-35 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 Gene3D G3DSA:3.30.360.10 154 318 1.1E-136 T 13-10-2018 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 7.0E-56 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 1.7E-195 T 13-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 SUPERFAMILY SSF51735 1 179 8.85E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.2E-30 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.2E-30 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.2E-30 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.2E-30 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.2E-30 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04605 aa65542953fa84d3fe3b3b6b557ad152 348 SUPERFAMILY SSF55347 155 317 3.57E-60 T 13-10-2018 CS348_02655 5a890739a80cdfe43c06a2b4138ee6c3 188 PIRSF PIRSF006118 13 188 5.9E-73 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_02655 5a890739a80cdfe43c06a2b4138ee6c3 188 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 26 178 3.4E-76 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_02655 5a890739a80cdfe43c06a2b4138ee6c3 188 Pfam PF08282 haloacid dehalogenase-like hydrolase 91 158 2.6E-11 T 13-10-2018 CS348_02655 5a890739a80cdfe43c06a2b4138ee6c3 188 SUPERFAMILY SSF56784 22 181 3.62E-41 T 13-10-2018 IPR036412 HAD-like superfamily CS348_02655 5a890739a80cdfe43c06a2b4138ee6c3 188 Gene3D G3DSA:3.40.50.1000 1 188 2.8E-61 T 13-10-2018 IPR023214 HAD superfamily CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR01900 YidC translocation/secretion protein signature 339 355 5.3E-30 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR01900 YidC translocation/secretion protein signature 488 512 5.3E-30 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR01900 YidC translocation/secretion protein signature 468 483 5.3E-30 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 251 266 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 324 344 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 66 87 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 415 438 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 499 522 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 158 178 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 217 235 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 PRINTS PR00701 60kDa inner membrane protein signature 462 484 1.3E-109 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 352 1.1E-118 T 13-10-2018 IPR028053 Membrane insertase YidC, N-terminal CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 535 26.908 T 13-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 Pfam PF14849 YidC periplasmic domain 61 343 1.5E-90 T 13-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 353 533 3.0E-69 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 Gene3D G3DSA:2.70.98.90 56 333 3.7E-115 T 13-10-2018 IPR038221 YidC, periplasmic domain superfamily CS348_24595 06cc7ace2ee4e145fcca8addcdeae9eb 548 Pfam PF02096 60Kd inner membrane protein 354 533 1.2E-60 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 SUPERFAMILY SSF56784 3 194 6.01E-43 T 13-10-2018 IPR036412 HAD-like superfamily CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 Pfam PF13419 Haloacid dehalogenase-like hydrolase 47 184 1.9E-11 T 13-10-2018 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 Gene3D G3DSA:3.40.50.1000 4 182 4.7E-68 T 13-10-2018 IPR023214 HAD superfamily CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 184 1.5E-18 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 6.3E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 6.3E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 6.3E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 6.3E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_23665 b3e87f656a9d6b21bfbfee4de4f04df9 199 Gene3D G3DSA:1.10.150.240 16 81 4.7E-68 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 Pfam PF02132 RecR protein 41 77 1.6E-15 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 2.5E-83 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 SUPERFAMILY SSF111304 2 199 4.84E-72 T 13-10-2018 IPR023627 Recombination protein RecR CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 104.387 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 Gene3D G3DSA:1.10.8.420 1 53 1.2E-18 T 13-10-2018 CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 Pfam PF13662 Toprim domain 82 172 5.7E-24 T 13-10-2018 IPR006171 TOPRIM domain CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 Gene3D G3DSA:3.40.1360.10 78 199 2.5E-40 T 13-10-2018 CS348_17930 dd15eb8a76e83f9052a6c9750adfed82 201 SMART SM00493 81 166 1.4E-20 T 13-10-2018 IPR006171 TOPRIM domain CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 SUPERFAMILY SSF81653 172 274 1.09E-27 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 SUPERFAMILY SSF81665 50 900 2.35E-102 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 377 383 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Pfam PF00689 Cation transporting ATPase, C-terminus 726 892 1.2E-13 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 SMART SM00831 48 121 1.8E-8 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 305 324 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 751 764 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 856 877 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 771 787 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 288 304 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 701 716 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 409 422 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 719 730 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 PRINTS PR01836 Magnesium-transporting ATPase signature 806 827 3.2E-85 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Gene3D G3DSA:1.20.1110.10 273 389 7.2E-14 T 13-10-2018 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Pfam PF00690 Cation transporter/ATPase, N-terminus 51 116 1.6E-14 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Pfam PF00702 haloacid dehalogenase-like hydrolase 371 657 4.1E-20 T 13-10-2018 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Pfam PF00122 E1-E2 ATPase 162 355 2.8E-45 T 13-10-2018 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Gene3D G3DSA:1.20.1110.10 682 808 5.1E-10 T 13-10-2018 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 SUPERFAMILY SSF81660 344 547 1.87E-43 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Gene3D G3DSA:2.70.150.10 118 272 1.5E-43 T 13-10-2018 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Gene3D G3DSA:3.40.50.1000 590 681 3.4E-22 T 13-10-2018 IPR023214 HAD superfamily CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 Gene3D G3DSA:3.40.1110.10 390 554 1.3E-66 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 35 902 0.0 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 610 732 4.4E-31 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 127 411 4.1E-38 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_21325 4cb49b9ab696f86762ff354f826feec3 902 SUPERFAMILY SSF56784 536 687 7.38E-37 T 13-10-2018 IPR036412 HAD-like superfamily CS348_06060 5fb35395016793edd45d701130e3ebd3 149 Pfam PF06610 L-alanine exporter 4 141 9.5E-68 T 13-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 CS348_06060 5fb35395016793edd45d701130e3ebd3 149 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 144 34.387 T 13-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 CS348_06060 5fb35395016793edd45d701130e3ebd3 149 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 8 141 7.0E-66 T 13-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 CS348_18595 0ff37be4d8225a357d80dcf8ba8de7ee 417 SUPERFAMILY SSF103473 7 398 1.44E-71 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18595 0ff37be4d8225a357d80dcf8ba8de7ee 417 Gene3D G3DSA:1.20.1250.20 11 213 3.6E-43 T 13-10-2018 CS348_18595 0ff37be4d8225a357d80dcf8ba8de7ee 417 Pfam PF07690 Major Facilitator Superfamily 23 351 2.8E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_18595 0ff37be4d8225a357d80dcf8ba8de7ee 417 Gene3D G3DSA:1.20.1250.20 214 397 1.6E-26 T 13-10-2018 CS348_18595 0ff37be4d8225a357d80dcf8ba8de7ee 417 ProSitePatterns PS00217 Sugar transport proteins signature 2. 110 135 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Pfam PF00384 Molybdopterin oxidoreductase 118 569 1.0E-83 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Gene3D G3DSA:2.40.40.20 665 811 1.3E-41 T 13-10-2018 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Pfam PF01568 Molydopterin dinucleotide binding domain 690 803 7.4E-27 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 SMART SM00926 56 115 2.3E-10 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 14 811 0.0 T 13-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 726 753 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Gene3D G3DSA:3.40.50.740 54 324 7.1E-90 T 13-10-2018 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 56 115 8.4E-14 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 61 80 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Gene3D G3DSA:3.40.50.740 426 621 3.9E-37 T 13-10-2018 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 Gene3D G3DSA:3.40.228.10 339 413 2.2E-19 T 13-10-2018 CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 SUPERFAMILY SSF50692 680 811 2.94E-38 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_12550 261f233c354d4a1878b2f1d6a46d102b 811 SUPERFAMILY SSF53706 57 692 1.44E-172 T 13-10-2018 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 354 370 - T 13-10-2018 IPR013793 Porin, Gram-negative type, conserved site CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 3.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00183 E.coli/Salmonella-type porin signature 300 319 3.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 3.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 3.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 3.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00183 E.coli/Salmonella-type porin signature 259 276 3.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 5.5E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 354 371 5.5E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 253 265 5.5E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 5.5E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 5.5E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 Gene3D G3DSA:2.40.160.10 22 403 2.6E-152 T 13-10-2018 IPR023614 Porin domain superfamily CS348_09770 3075fc9709328bdc8254894a9b64405f 403 SUPERFAMILY SSF56935 22 403 3.97E-76 T 13-10-2018 CS348_09770 3075fc9709328bdc8254894a9b64405f 403 Pfam PF00267 Gram-negative porin 27 403 2.1E-152 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_01655 fb94f9343121628b370983c0b427723d 776 Pfam PF16921 Tex protein YqgF-like domain 328 451 2.7E-50 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain CS348_01655 fb94f9343121628b370983c0b427723d 776 SUPERFAMILY SSF47781 470 558 5.0E-28 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_01655 fb94f9343121628b370983c0b427723d 776 SMART SM00732 327 424 3.4E-35 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CS348_01655 fb94f9343121628b370983c0b427723d 776 SMART SM00316 649 720 6.8E-26 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_01655 fb94f9343121628b370983c0b427723d 776 Gene3D G3DSA:1.10.150.310 499 630 4.1E-51 T 13-10-2018 CS348_01655 fb94f9343121628b370983c0b427723d 776 Pfam PF12836 Helix-hairpin-helix motif 491 555 1.6E-28 T 13-10-2018 CS348_01655 fb94f9343121628b370983c0b427723d 776 Gene3D G3DSA:1.10.3500.10 113 498 1.4E-153 T 13-10-2018 IPR023323 Tex-like domain superfamily CS348_01655 fb94f9343121628b370983c0b427723d 776 SUPERFAMILY SSF50249 638 723 1.14E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_01655 fb94f9343121628b370983c0b427723d 776 Gene3D G3DSA:3.30.420.140 326 451 1.4E-153 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 CS348_01655 fb94f9343121628b370983c0b427723d 776 SUPERFAMILY SSF53098 323 469 4.8E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_01655 fb94f9343121628b370983c0b427723d 776 Gene3D G3DSA:2.40.50.140 631 724 7.0E-28 T 13-10-2018 CS348_01655 fb94f9343121628b370983c0b427723d 776 SUPERFAMILY SSF47781 560 632 8.0E-20 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_01655 fb94f9343121628b370983c0b427723d 776 Pfam PF09371 Tex-like protein N-terminal domain 10 193 4.2E-69 T 13-10-2018 IPR018974 Tex-like protein, N-terminal CS348_01655 fb94f9343121628b370983c0b427723d 776 Pfam PF00575 S1 RNA binding domain 651 720 1.3E-23 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_01655 fb94f9343121628b370983c0b427723d 776 Gene3D G3DSA:1.10.10.650 3 110 1.3E-39 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily CS348_01655 fb94f9343121628b370983c0b427723d 776 SUPERFAMILY SSF158832 2 322 1.57E-120 T 13-10-2018 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 Gene3D G3DSA:3.40.50.150 391 476 2.7E-15 T 13-10-2018 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 Gene3D G3DSA:3.40.50.150 90 346 6.7E-98 T 13-10-2018 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 Gene3D G3DSA:1.10.260.140 20 89 9.2E-33 T 13-10-2018 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 275 288 2.4E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 92 108 2.4E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 221 235 2.4E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 173 185 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 93 454 1.4E-103 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 SUPERFAMILY SSF53335 91 454 5.44E-78 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_09785 f75ada68bb00d20017f755973a2136ff 476 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 436 454 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 CS348_09785 f75ada68bb00d20017f755973a2136ff 476 Pfam PF00145 C-5 cytosine-specific DNA methylase 91 452 1.3E-74 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_11755 26401c1e2f4a94ef12e74dc29f54d1d6 149 Gene3D G3DSA:2.170.150.70 6 123 3.2E-36 T 13-10-2018 CS348_11755 26401c1e2f4a94ef12e74dc29f54d1d6 149 SUPERFAMILY SSF51316 3 123 7.32E-30 T 13-10-2018 IPR011057 Mss4-like superfamily CS348_11755 26401c1e2f4a94ef12e74dc29f54d1d6 149 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 30 108 1.6E-8 T 13-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CS348_07445 0a55e8fc0b87f511d06d3387e9abf324 332 Gene3D G3DSA:1.20.1530.20 3 323 6.0E-31 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_07445 0a55e8fc0b87f511d06d3387e9abf324 332 PIRSF PIRSF026166 1 332 6.4E-134 T 13-10-2018 IPR016833 Putative sodium bile acid cotransporter CS348_07445 0a55e8fc0b87f511d06d3387e9abf324 332 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 316 1.6E-100 T 13-10-2018 IPR016833 Putative sodium bile acid cotransporter CS348_04555 8007e09175639a1e0d6b30516f0cfca3 424 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 98 6.0E-7 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_04555 8007e09175639a1e0d6b30516f0cfca3 424 SUPERFAMILY SSF51735 159 336 6.24E-20 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_04555 8007e09175639a1e0d6b30516f0cfca3 424 Gene3D G3DSA:3.40.50.720 155 319 8.3E-45 T 13-10-2018 CS348_04555 8007e09175639a1e0d6b30516f0cfca3 424 Pfam PF00107 Zinc-binding dehydrogenase 186 329 2.1E-19 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_04555 8007e09175639a1e0d6b30516f0cfca3 424 Gene3D G3DSA:3.90.180.10 15 351 8.3E-45 T 13-10-2018 CS348_04555 8007e09175639a1e0d6b30516f0cfca3 424 SUPERFAMILY SSF50129 3 188 6.18E-24 T 13-10-2018 IPR011032 GroES-like superfamily CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 84 148 9.8E-10 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 167 282 2.9E-37 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 SUPERFAMILY SSF57802 295 347 8.58E-18 T 13-10-2018 CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 Pfam PF00301 Rubredoxin 295 341 2.7E-18 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 Gene3D G3DSA:3.30.1370.140 167 261 2.4E-26 T 13-10-2018 IPR038527 HupH, C-terminal domain superfamily CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 Gene3D G3DSA:3.30.1370.140 49 147 3.0E-16 T 13-10-2018 IPR038527 HupH, C-terminal domain superfamily CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 PRINTS PR00163 Rubredoxin signature 295 311 1.7E-8 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 PRINTS PR00163 Rubredoxin signature 325 341 1.7E-8 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 75 150 1.0E-8 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 167 283 1.0E-64 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_12370 f055433dc86fca4aa3dc8c23ec99a0c2 353 Gene3D G3DSA:2.20.28.10 294 348 1.0E-20 T 13-10-2018 CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 Pfam PF14376 Haem-binding domain 18 152 7.4E-33 T 13-10-2018 IPR025992 Haem-binding domain CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 Pfam PF00034 Cytochrome c 340 453 5.0E-6 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 SUPERFAMILY SSF46626 319 463 1.75E-38 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 Gene3D G3DSA:1.10.760.10 181 456 1.1E-100 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 Pfam PF03150 Di-haem cytochrome c peroxidase 185 332 2.8E-47 T 13-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 SMART SM01235 16 155 4.6E-51 T 13-10-2018 IPR025992 Haem-binding domain CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 SUPERFAMILY SSF46626 165 320 1.08E-45 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 CS348_00085 338f271e3f2dfe7eea5c505dc8f6bc99 466 Gene3D G3DSA:1.10.760.10 185 332 1.1E-100 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 CS348_19430 1d12b2be657e12728593ff6dcbe63c93 409 SUPERFAMILY SSF88713 191 381 1.81E-30 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CS348_19430 1d12b2be657e12728593ff6dcbe63c93 409 Pfam PF01522 Polysaccharide deacetylase 228 366 1.1E-20 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CS348_19430 1d12b2be657e12728593ff6dcbe63c93 409 Gene3D G3DSA:3.20.20.370 159 404 1.1E-60 T 13-10-2018 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.515 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF54211 4 144 1.32E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Gene3D G3DSA:3.30.1370.10 550 621 9.5E-19 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SMART SM00316 620 690 3.6E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF55666 450 548 1.68E-27 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 PIRSF PIRSF005499 2 711 3.7E-300 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Gene3D G3DSA:3.30.230.70 233 549 2.8E-114 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF46915 226 325 1.11E-25 T 13-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SMART SM00322 552 617 6.1E-12 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Gene3D G3DSA:2.40.50.140 622 693 3.8E-29 T 13-10-2018 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF50249 608 693 6.94E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF55666 145 235 3.4E-31 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF54211 301 492 3.14E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_02830 2d4740f255a8f79c02759103570a12d9 711 SUPERFAMILY SSF54791 554 622 9.86E-17 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF00575 S1 RNA binding domain 619 690 2.8E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 1.1E-20 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 2.8E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 4.5E-26 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Gene3D G3DSA:3.30.230.70 2 229 6.1E-80 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 1.7E-4 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 2.8E-14 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_02830 2d4740f255a8f79c02759103570a12d9 711 Pfam PF00013 KH domain 556 614 7.4E-9 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 Pfam PF00293 NUDIX domain 7 144 3.4E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 SUPERFAMILY SSF55811 5 145 7.99E-25 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 PRINTS PR01404 DATP pyrophosphohydrolase signature 74 93 5.2E-54 T 13-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 PRINTS PR01404 DATP pyrophosphohydrolase signature 23 44 5.2E-54 T 13-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 PRINTS PR01404 DATP pyrophosphohydrolase signature 129 142 5.2E-54 T 13-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 PRINTS PR01404 DATP pyrophosphohydrolase signature 6 23 5.2E-54 T 13-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 PRINTS PR01404 DATP pyrophosphohydrolase signature 102 123 5.2E-54 T 13-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 CS348_10240 6a4c20e2a2d209e3d65493b30d2c19b4 150 Gene3D G3DSA:3.90.79.10 1 150 1.0E-48 T 13-10-2018 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 Pfam PF02311 AraC-like ligand binding domain 23 148 3.4E-19 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 Gene3D G3DSA:1.10.10.60 171 281 9.7E-27 T 13-10-2018 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 Pfam PF12833 Helix-turn-helix domain 199 275 6.6E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 244 259 1.4E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 275 1.4E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 Hamap MF_01533 HTH-type transcriptional activator RhaR [rhaR]. 1 282 50.233 T 13-10-2018 IPR023699 Transcription activator HTH, RhaR GO:0003700|GO:0005737|GO:0019299|GO:0045893 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 SUPERFAMILY SSF46689 228 276 2.91E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 SMART SM00342 192 275 7.0E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_23540 20f3c1910eb754671ab79d6244650f94 282 SUPERFAMILY SSF51182 7 154 7.29E-15 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_23540 20f3c1910eb754671ab79d6244650f94 282 Gene3D G3DSA:2.60.120.10 4 89 4.9E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_23540 20f3c1910eb754671ab79d6244650f94 282 SUPERFAMILY SSF46689 177 227 8.06E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_18040 cc5a5161fa057616d476e74a99312a9f 189 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 45 149 4.6E-41 T 13-10-2018 IPR039366 YscW/ExsB CS348_01455 0e12117a472f44d8362a754376f11aa8 295 Gene3D G3DSA:1.10.3720.10 52 292 1.1E-56 T 13-10-2018 IPR035906 MetI-like superfamily CS348_01455 0e12117a472f44d8362a754376f11aa8 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 293 8.9E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_01455 0e12117a472f44d8362a754376f11aa8 295 SUPERFAMILY SSF161098 56 282 1.16E-50 T 13-10-2018 IPR035906 MetI-like superfamily CS348_18210 184807271e9003b811f08c069f523e9a 367 Gene3D G3DSA:3.90.1150.10 9 354 7.9E-135 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_18210 184807271e9003b811f08c069f523e9a 367 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 367 204.288 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 CS348_18210 184807271e9003b811f08c069f523e9a 367 Gene3D G3DSA:3.40.640.10 17 263 7.9E-135 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_18210 184807271e9003b811f08c069f523e9a 367 PIRSF PIRSF000524 1 366 9.2E-62 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 CS348_18210 184807271e9003b811f08c069f523e9a 367 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 7 362 1.4E-153 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 CS348_18210 184807271e9003b811f08c069f523e9a 367 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 4 366 1.6E-198 T 13-10-2018 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 CS348_18210 184807271e9003b811f08c069f523e9a 367 SUPERFAMILY SSF53383 6 363 5.98E-87 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_18210 184807271e9003b811f08c069f523e9a 367 Pfam PF00266 Aminotransferase class-V 39 304 4.7E-29 T 13-10-2018 IPR000192 Aminotransferase class V domain CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 Pfam PF00196 Bacterial regulatory proteins, luxR family 835 890 1.5E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 SUPERFAMILY SSF46894 827 892 7.14E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 SUPERFAMILY SSF52540 6 226 1.78E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 ProSitePatterns PS00622 LuxR-type HTH domain signature. 850 877 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 899 39.894 T 13-10-2018 IPR023768 Transcriptional regulator HTH-type, MalT CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 Gene3D G3DSA:1.25.40.10 436 808 3.9E-99 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 SUPERFAMILY SSF48452 442 803 5.69E-152 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 Gene3D G3DSA:1.10.10.10 830 893 1.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 836 850 1.2E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 850 866 1.2E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 866 878 1.2E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01595 c442308f754caa6bfa1fa21e1234e606 901 SMART SM00421 833 890 5.3E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 SUPERFAMILY SSF53448 20 390 1.13E-77 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_01560 91f326e023a354842dc8d3ce5966795e 431 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 Pfam PF00483 Nucleotidyl transferase 22 291 9.0E-71 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 Gene3D G3DSA:3.90.550.10 1 300 1.3E-98 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_01560 91f326e023a354842dc8d3ce5966795e 431 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 5.5E-156 T 13-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 Gene3D G3DSA:2.160.10.10 301 431 7.6E-42 T 13-10-2018 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 SUPERFAMILY SSF51161 312 411 1.52E-18 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_01560 91f326e023a354842dc8d3ce5966795e 431 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 13-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 CS348_01560 91f326e023a354842dc8d3ce5966795e 431 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 52.148 T 13-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 Gene3D G3DSA:3.40.30.60 361 504 1.3E-49 T 13-10-2018 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 Gene3D G3DSA:1.10.490.80 596 689 2.1E-7 T 13-10-2018 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 Pfam PF00771 FHIPEP family 31 680 1.4E-268 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PIRSF PIRSF005419 9 692 1.2E-243 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 13-10-2018 IPR025505 FHIPEP conserved site CS348_10170 c675f538530d6c1236b653d4826b53d4 692 Gene3D G3DSA:1.10.8.540 505 593 1.0E-29 T 13-10-2018 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 5.9E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 5.9E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 5.9E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 5.9E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 5.9E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 5.9E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_10170 c675f538530d6c1236b653d4826b53d4 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 6.1E-283 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 SUPERFAMILY SSF55120 78 322 2.67E-77 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 Gene3D G3DSA:3.10.290.10 2 76 7.0E-27 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 SMART SM00363 18 83 1.5E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 Pfam PF01479 S4 domain 18 65 1.5E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 13 313 1.9E-108 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 SUPERFAMILY SSF55174 17 69 1.16E-11 T 13-10-2018 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 Pfam PF00849 RNA pseudouridylate synthase 92 242 4.6E-31 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_06485 28940d457486ad0795aee2bbefec6b92 326 Gene3D G3DSA:3.30.2350.10 85 316 4.6E-70 T 13-10-2018 CS348_02260 41d3bc47849c36132098f99a4f499325 385 Gene3D G3DSA:2.40.420.20 303 372 1.9E-114 T 13-10-2018 CS348_02260 41d3bc47849c36132098f99a4f499325 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 374 6.8E-87 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_02260 41d3bc47849c36132098f99a4f499325 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 292 8.7E-15 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CS348_02260 41d3bc47849c36132098f99a4f499325 385 Gene3D G3DSA:2.40.50.100 63 207 1.9E-114 T 13-10-2018 CS348_02260 41d3bc47849c36132098f99a4f499325 385 Gene3D G3DSA:1.10.287.470 98 171 1.9E-114 T 13-10-2018 CS348_02260 41d3bc47849c36132098f99a4f499325 385 Pfam PF00529 HlyD membrane-fusion protein of T1SS 293 359 4.8E-12 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_02260 41d3bc47849c36132098f99a4f499325 385 SUPERFAMILY SSF111369 51 299 2.62E-89 T 13-10-2018 CS348_02260 41d3bc47849c36132098f99a4f499325 385 Gene3D G3DSA:2.40.30.170 51 302 1.9E-114 T 13-10-2018 CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 SMART SM00530 11 66 2.2E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 Gene3D G3DSA:1.10.260.40 4 70 1.8E-19 T 13-10-2018 CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 Pfam PF07883 Cupin domain 105 171 8.7E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 Gene3D G3DSA:2.60.120.10 85 178 5.6E-23 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 SUPERFAMILY SSF51182 51 175 4.46E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 SUPERFAMILY SSF47413 3 72 4.29E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_11950 f847b9f27aa8ca70283e9cafcd7dbaf4 178 Pfam PF01381 Helix-turn-helix 12 64 1.1E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.621 T 13-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 Gene3D G3DSA:3.40.50.1360 7 207 1.7E-76 T 13-10-2018 CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 Gene3D G3DSA:3.30.70.260 125 196 1.7E-76 T 13-10-2018 CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 SUPERFAMILY SSF100950 2 146 2.23E-46 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 SUPERFAMILY SSF75445 127 198 3.14E-24 T 13-10-2018 CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 1.6E-71 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CS348_04640 96cffd422c52bd80e71bbbeee773b269 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 7.8E-59 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CS348_18035 90aa720f34262b6010c40c99730b1449 129 Gene3D G3DSA:1.10.10.10 30 129 6.0E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18035 90aa720f34262b6010c40c99730b1449 129 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 33 101 2.6E-14 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CS348_18035 90aa720f34262b6010c40c99730b1449 129 SUPERFAMILY SSF46767 31 113 7.98E-26 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 CS348_18035 90aa720f34262b6010c40c99730b1449 129 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 33 112 1.3E-25 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CS348_17035 db7b928b5517408f4eed744c95f33882 377 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 11 171 20.689 T 13-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 CS348_17035 db7b928b5517408f4eed744c95f33882 377 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 83 181 1.1E-28 T 13-10-2018 IPR012997 Rare lipoprotein A CS348_17035 db7b928b5517408f4eed744c95f33882 377 SUPERFAMILY SSF50685 81 162 5.02E-6 T 13-10-2018 IPR036908 RlpA-like domain superfamily CS348_17035 db7b928b5517408f4eed744c95f33882 377 Gene3D G3DSA:2.40.40.10 80 171 6.6E-26 T 13-10-2018 IPR036908 RlpA-like domain superfamily CS348_17035 db7b928b5517408f4eed744c95f33882 377 Pfam PF03330 Lytic transglycolase 81 168 7.5E-20 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain CS348_17035 db7b928b5517408f4eed744c95f33882 377 Gene3D G3DSA:3.30.70.1070 304 375 1.4E-10 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_17035 db7b928b5517408f4eed744c95f33882 377 SUPERFAMILY SSF110997 303 372 1.7E-14 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_17035 db7b928b5517408f4eed744c95f33882 377 Pfam PF05036 Sporulation related domain 302 373 4.6E-15 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CS348_05080 59c04932ee1d6834490fe146fea9778c 401 Gene3D G3DSA:3.40.640.10 34 292 5.3E-153 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_05080 59c04932ee1d6834490fe146fea9778c 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CS348_05080 59c04932ee1d6834490fe146fea9778c 401 Gene3D G3DSA:3.90.1150.10 21 389 5.3E-153 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_05080 59c04932ee1d6834490fe146fea9778c 401 SUPERFAMILY SSF53383 5 397 5.85E-108 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_05080 59c04932ee1d6834490fe146fea9778c 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 1.1E-223 T 13-10-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CS348_05080 59c04932ee1d6834490fe146fea9778c 401 Pfam PF00266 Aminotransferase class-V 21 388 1.8E-137 T 13-10-2018 IPR000192 Aminotransferase class V domain CS348_07320 5a7a0470f8f791784923e271545e21e4 289 SUPERFAMILY SSF53187 57 277 4.39E-55 T 13-10-2018 CS348_07320 5a7a0470f8f791784923e271545e21e4 289 SMART SM00646 118 273 7.3E-68 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CS348_07320 5a7a0470f8f791784923e271545e21e4 289 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 59 273 7.1E-52 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CS348_07320 5a7a0470f8f791784923e271545e21e4 289 Gene3D G3DSA:3.40.630.40 45 285 2.5E-78 T 13-10-2018 CS348_23640 d21789cfdd52cb4f48e67d3e9fb11e00 103 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 21 93 7.0E-21 T 13-10-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Pfam PF16193 AAA C-terminal domain 188 267 1.7E-22 T 13-10-2018 IPR032423 AAA C-terminal domain CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Gene3D G3DSA:1.10.3710.10 346 447 9.3E-41 T 13-10-2018 CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 SMART SM00382 49 165 5.5E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Gene3D G3DSA:1.20.272.10 241 345 3.7E-43 T 13-10-2018 CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 SUPERFAMILY SSF48019 252 434 1.13E-71 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 SUPERFAMILY SSF52540 6 234 3.35E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Gene3D G3DSA:3.40.50.300 1 164 1.1E-50 T 13-10-2018 CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 159 3.6E-17 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Pfam PF12002 MgsA AAA+ ATPase C terminal 268 434 2.8E-65 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal CS348_15405 9b6f035a562c5c6d568cce44013d34e5 447 Gene3D G3DSA:1.10.8.60 165 240 2.2E-31 T 13-10-2018 CS348_04660 450a0385c8ec94e446c2964ca86362f5 109 SUPERFAMILY SSF102829 6 94 1.22E-24 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily CS348_04660 450a0385c8ec94e446c2964ca86362f5 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 37.216 T 13-10-2018 IPR023771 Cell division protein ZapA, eubacteria CS348_04660 450a0385c8ec94e446c2964ca86362f5 109 Gene3D G3DSA:1.10.20.30 1 47 4.9E-27 T 13-10-2018 CS348_04660 450a0385c8ec94e446c2964ca86362f5 109 Pfam PF05164 Cell division protein ZapA 6 90 7.8E-20 T 13-10-2018 IPR007838 Cell division protein ZapA-like CS348_04660 450a0385c8ec94e446c2964ca86362f5 109 Gene3D G3DSA:1.20.5.50 48 102 8.4E-7 T 13-10-2018 CS348_00260 bed115abb3fa5cfece8b280488b49568 463 ProSitePatterns PS00942 glpT family of transporters signature. 156 172 - T 13-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 CS348_00260 bed115abb3fa5cfece8b280488b49568 463 PIRSF PIRSF002808 11 461 1.8E-102 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_00260 bed115abb3fa5cfece8b280488b49568 463 SUPERFAMILY SSF103473 20 451 5.75E-59 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00260 bed115abb3fa5cfece8b280488b49568 463 Gene3D G3DSA:1.20.1250.20 246 460 2.8E-36 T 13-10-2018 CS348_00260 bed115abb3fa5cfece8b280488b49568 463 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 426 1.3E-148 T 13-10-2018 CS348_00260 bed115abb3fa5cfece8b280488b49568 463 Pfam PF07690 Major Facilitator Superfamily 35 397 3.3E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_00260 bed115abb3fa5cfece8b280488b49568 463 Gene3D G3DSA:1.20.1250.20 28 228 5.8E-33 T 13-10-2018 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 SMART SM00421 153 210 1.3E-25 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 SMART SM00448 7 120 6.2E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 1.0E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 Gene3D G3DSA:1.10.10.10 129 215 1.6E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 SUPERFAMILY SSF52172 6 135 5.27E-36 T 13-10-2018 IPR011006 CheY-like superfamily CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 Pfam PF00072 Response regulator receiver domain 9 120 3.5E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 SUPERFAMILY SSF46894 146 213 1.6E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 Gene3D G3DSA:3.40.50.2300 2 128 1.3E-36 T 13-10-2018 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 1.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 1.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_10990 dd2b39cacb9e85dc7af79accf87b0993 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 1.1E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08265 6aa6707baad63078c83d86e41a8c3bc2 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 13-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08265 6aa6707baad63078c83d86e41a8c3bc2 376 SUPERFAMILY SSF47240 3 340 4.64E-117 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_08265 6aa6707baad63078c83d86e41a8c3bc2 376 Gene3D G3DSA:1.10.620.20 2 340 1.4E-153 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 CS348_08265 6aa6707baad63078c83d86e41a8c3bc2 376 Pfam PF00268 Ribonucleotide reductase, small chain 32 332 9.0E-50 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_03480 ade8703d309a827a5393c52774fe3f84 395 Gene3D G3DSA:3.90.1150.10 259 395 2.1E-45 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_03480 ade8703d309a827a5393c52774fe3f84 395 PIRSF PIRSF001434 1 395 1.7E-116 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CS348_03480 ade8703d309a827a5393c52774fe3f84 395 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CS348_03480 ade8703d309a827a5393c52774fe3f84 395 SUPERFAMILY SSF53383 24 393 2.21E-88 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_03480 ade8703d309a827a5393c52774fe3f84 395 Gene3D G3DSA:3.40.640.10 1 258 1.4E-69 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_03480 ade8703d309a827a5393c52774fe3f84 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 391 8.3E-119 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CS348_03480 ade8703d309a827a5393c52774fe3f84 395 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 394 8.1E-171 T 13-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Gene3D G3DSA:3.20.20.60 480 791 1.6E-99 T 13-10-2018 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 696 714 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 PIRSF PIRSF000854 4 792 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 386 457 4.7E-27 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 9 792 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Gene3D G3DSA:3.30.1490.20 6 197 1.0E-71 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Gene3D G3DSA:3.50.30.10 360 479 8.1E-41 T 13-10-2018 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 SUPERFAMILY SSF52009 350 468 2.09E-35 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 SUPERFAMILY SSF56059 7 386 1.88E-109 T 13-10-2018 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 482 789 5.8E-60 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Gene3D G3DSA:3.30.470.20 198 359 2.6E-59 T 13-10-2018 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 SUPERFAMILY SSF51621 467 790 6.28E-96 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 416 427 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CS348_13335 bcbca87db4a237e0a3a2fd5ce9d40874 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 350 9.4E-121 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CS348_23225 ccac42821296800b408997a1651ff3d1 530 Gene3D G3DSA:3.30.420.40 7 251 2.6E-63 T 13-10-2018 CS348_23225 ccac42821296800b408997a1651ff3d1 530 SUPERFAMILY SSF53067 262 513 2.72E-50 T 13-10-2018 CS348_23225 ccac42821296800b408997a1651ff3d1 530 PIRSF PIRSF000538 11 518 7.5E-119 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_23225 ccac42821296800b408997a1651ff3d1 530 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 298 467 1.8E-18 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_23225 ccac42821296800b408997a1651ff3d1 530 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 13 260 2.7E-50 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_23225 ccac42821296800b408997a1651ff3d1 530 SUPERFAMILY SSF53067 13 263 4.17E-58 T 13-10-2018 CS348_23225 ccac42821296800b408997a1651ff3d1 530 Hamap MF_02053 Autoinducer-2 kinase [lsrK]. 15 530 77.753 T 13-10-2018 IPR033676 Autoinducer-2 kinase GO:0009372|GO:0071518 CS348_23225 ccac42821296800b408997a1651ff3d1 530 Gene3D G3DSA:3.30.420.40 253 518 1.4E-53 T 13-10-2018 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 SMART SM00481 7 74 1.1E-26 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Gene3D G3DSA:2.40.50.140 982 1074 9.2E-7 T 13-10-2018 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Pfam PF02811 PHP domain 8 171 1.3E-40 T 13-10-2018 IPR004013 PHP domain GO:0003824 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Gene3D G3DSA:3.20.20.140 1 270 2.2E-94 T 13-10-2018 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1031 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Pfam PF01336 OB-fold nucleic acid binding domain 1000 1072 1.8E-8 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 SUPERFAMILY SSF89550 6 263 6.47E-17 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Gene3D G3DSA:1.10.10.1600 433 510 8.0E-35 T 13-10-2018 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 291 735 3.9E-179 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19140 661dd3fd970f2149e7795e03ab110274 1160 Pfam PF14579 Helix-hairpin-helix motif 808 897 7.7E-25 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 Pfam PF00137 ATP synthase subunit C 11 69 1.5E-9 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 SUPERFAMILY SSF81333 3 77 4.58E-18 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily CS348_24450 56b533cc370c1e28d908debdcf79489b 79 Gene3D G3DSA:1.20.20.10 1 79 3.9E-34 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.323 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.6E-8 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.6E-8 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.6E-8 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24450 56b533cc370c1e28d908debdcf79489b 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CS348_02445 e2068e58fc539a10cd2708cd5a131201 422 Pfam PF03600 Citrate transporter 15 365 8.4E-47 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 CS348_02445 e2068e58fc539a10cd2708cd5a131201 422 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 6 413 3.8E-62 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CS348_22070 f5bf3c6e03a41071d2adf3d807c7aa1e 812 Gene3D G3DSA:2.60.40.2610 651 738 1.4E-16 T 13-10-2018 CS348_22070 f5bf3c6e03a41071d2adf3d807c7aa1e 812 Gene3D G3DSA:2.60.40.3110 266 329 1.1E-18 T 13-10-2018 CS348_22070 f5bf3c6e03a41071d2adf3d807c7aa1e 812 Pfam PF13954 PapC N-terminal domain 59 175 2.2E-19 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_22070 f5bf3c6e03a41071d2adf3d807c7aa1e 812 SUPERFAMILY SSF141729 58 153 2.49E-15 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_22070 f5bf3c6e03a41071d2adf3d807c7aa1e 812 Pfam PF00577 Outer membrane usher protein 190 733 3.1E-87 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_22070 f5bf3c6e03a41071d2adf3d807c7aa1e 812 Gene3D G3DSA:3.10.20.410 56 163 1.9E-11 T 13-10-2018 CS348_19325 9e8907672cb5be591232aaabd4adfb42 265 SUPERFAMILY SSF52540 13 239 2.61E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19325 9e8907672cb5be591232aaabd4adfb42 265 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_19325 9e8907672cb5be591232aaabd4adfb42 265 Pfam PF00005 ABC transporter 27 176 1.3E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_19325 9e8907672cb5be591232aaabd4adfb42 265 SMART SM00382 36 224 4.5E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_19325 9e8907672cb5be591232aaabd4adfb42 265 Gene3D G3DSA:3.40.50.300 4 261 3.9E-70 T 13-10-2018 CS348_24785 1cda553362c1888983b99117abcc474f 187 Pfam PF05175 Methyltransferase small domain 49 158 8.1E-5 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_24785 1cda553362c1888983b99117abcc474f 187 SUPERFAMILY SSF53335 34 187 9.87E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_24785 1cda553362c1888983b99117abcc474f 187 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 30 46 1.4E-6 T 13-10-2018 CS348_24785 1cda553362c1888983b99117abcc474f 187 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 54 68 1.4E-6 T 13-10-2018 CS348_24785 1cda553362c1888983b99117abcc474f 187 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 113 125 1.4E-6 T 13-10-2018 CS348_24785 1cda553362c1888983b99117abcc474f 187 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 125 149 1.4E-6 T 13-10-2018 CS348_24785 1cda553362c1888983b99117abcc474f 187 Gene3D G3DSA:3.40.50.150 35 187 3.0E-19 T 13-10-2018 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 Pfam PF02311 AraC-like ligand binding domain 27 149 1.8E-17 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 SUPERFAMILY SSF46689 217 264 9.86E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 SUPERFAMILY SSF51215 27 150 2.22E-21 T 13-10-2018 IPR037923 Transcription regulator HTH-like CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 Pfam PF12833 Helix-turn-helix domain 186 263 1.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 SMART SM00342 180 262 4.8E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 SUPERFAMILY SSF46689 168 212 4.21E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 Gene3D G3DSA:2.60.120.10 20 91 9.4E-9 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 Gene3D G3DSA:1.10.10.60 165 267 1.1E-23 T 13-10-2018 CS348_20990 1f36a62eb9103420dce1447eb70284a8 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 217 258 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_17865 4b87eaef190a6601cecd439445999878 833 ProSitePatterns PS01229 Hypothetical cof family signature 2. 717 739 - T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 SUPERFAMILY SSF81665 285 785 7.45E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 Gene3D G3DSA:3.40.1110.10 531 649 5.3E-93 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 748 773 1.4E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 689 705 1.4E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 717 733 1.4E-8 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 Pfam PF00122 E1-E2 ATPase 319 499 9.0E-52 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 Gene3D G3DSA:2.70.150.20 306 422 3.7E-35 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 232 826 2.4E-192 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 Pfam PF00702 haloacid dehalogenase-like hydrolase 517 731 1.0E-49 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 Pfam PF00403 Heavy-metal-associated domain 104 158 4.2E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CS348_17865 4b87eaef190a6601cecd439445999878 833 Pfam PF00403 Heavy-metal-associated domain 8 61 6.2E-9 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CS348_17865 4b87eaef190a6601cecd439445999878 833 SUPERFAMILY SSF55008 2 67 7.2E-12 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CS348_17865 4b87eaef190a6601cecd439445999878 833 ProSitePatterns PS01047 Heavy-metal-associated domain. 104 133 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CS348_17865 4b87eaef190a6601cecd439445999878 833 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 CS348_17865 4b87eaef190a6601cecd439445999878 833 SUPERFAMILY SSF81653 321 418 3.92E-25 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 SUPERFAMILY SSF55008 95 164 1.23E-18 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CS348_17865 4b87eaef190a6601cecd439445999878 833 Gene3D G3DSA:3.30.70.100 101 163 1.7E-19 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 251 826 2.9E-182 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 522 528 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 SUPERFAMILY SSF56784 518 823 5.96E-59 T 13-10-2018 IPR036412 HAD-like superfamily CS348_17865 4b87eaef190a6601cecd439445999878 833 Gene3D G3DSA:3.30.70.100 4 66 2.4E-13 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 290 794 3.5E-90 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_17865 4b87eaef190a6601cecd439445999878 833 Gene3D G3DSA:3.40.50.1000 501 769 5.3E-93 T 13-10-2018 IPR023214 HAD superfamily CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 740 752 2.3E-26 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 664 674 2.3E-26 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 534 2.3E-26 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 717 736 2.3E-26 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 368 382 2.3E-26 T 13-10-2018 CS348_17865 4b87eaef190a6601cecd439445999878 833 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 642 653 2.3E-26 T 13-10-2018 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 SUPERFAMILY SSF53850 102 299 7.96E-23 T 13-10-2018 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 Gene3D G3DSA:1.10.10.10 7 93 5.8E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 3.8E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 3.8E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 3.8E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 Gene3D G3DSA:3.40.190.10 173 272 1.8E-14 T 13-10-2018 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 Gene3D G3DSA:3.40.190.10 102 292 1.8E-14 T 13-10-2018 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 71 3.6E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 SUPERFAMILY SSF46785 12 94 1.33E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_21055 a76a7d000e13dd1413e0e255a32332c9 302 Pfam PF03466 LysR substrate binding domain 102 296 2.4E-24 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_20100 5aec93cb2fe76c5e4b7aed0c35f6b314 228 Gene3D G3DSA:3.40.50.2300 1 139 5.0E-24 T 13-10-2018 CS348_20100 5aec93cb2fe76c5e4b7aed0c35f6b314 228 Pfam PF12431 Transcriptional regulator 134 163 1.8E-7 T 13-10-2018 IPR028141 Transcriptional regulator CS348_20100 5aec93cb2fe76c5e4b7aed0c35f6b314 228 SUPERFAMILY SSF52172 1 139 3.84E-29 T 13-10-2018 IPR011006 CheY-like superfamily CS348_20100 5aec93cb2fe76c5e4b7aed0c35f6b314 228 PIRSF PIRSF006171 2 228 4.0E-73 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 CS348_20100 5aec93cb2fe76c5e4b7aed0c35f6b314 228 Pfam PF00072 Response regulator receiver domain 7 117 4.4E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_20100 5aec93cb2fe76c5e4b7aed0c35f6b314 228 SMART SM00448 4 117 7.3E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_06015 e8d6abb90f881b11f9b71fe4f19c0800 319 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 97 113 - T 13-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06015 e8d6abb90f881b11f9b71fe4f19c0800 319 Pfam PF00268 Ribonucleotide reductase, small chain 9 280 9.8E-85 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06015 e8d6abb90f881b11f9b71fe4f19c0800 319 Gene3D G3DSA:1.10.620.20 1 288 7.0E-122 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 CS348_06015 e8d6abb90f881b11f9b71fe4f19c0800 319 PIRSF PIRSF000355 2 316 1.6E-79 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06015 e8d6abb90f881b11f9b71fe4f19c0800 319 SUPERFAMILY SSF47240 6 319 1.17E-102 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_06015 e8d6abb90f881b11f9b71fe4f19c0800 319 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 7 319 3.3E-143 T 13-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_04475 84132c69a2050e3d49148a1167e6bb41 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.249 T 13-10-2018 IPR003774 Protein of unknown function UPF0301 CS348_04475 84132c69a2050e3d49148a1167e6bb41 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 3.7E-48 T 13-10-2018 IPR003774 Protein of unknown function UPF0301 CS348_04475 84132c69a2050e3d49148a1167e6bb41 187 SUPERFAMILY SSF143456 1 187 2.22E-65 T 13-10-2018 CS348_04475 84132c69a2050e3d49148a1167e6bb41 187 Gene3D G3DSA:3.40.1740.10 1 187 1.2E-63 T 13-10-2018 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 Gene3D G3DSA:2.40.50.140 32 125 2.6E-33 T 13-10-2018 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1029 1065 1.1E-16 T 13-10-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 SMART SM00316 37 119 9.5E-12 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 Gene3D G3DSA:3.40.1260.20 401 510 1.3E-43 T 13-10-2018 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 Hamap MF_00970 Ribonuclease E [rne]. 1 1054 38.973 T 13-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 SUPERFAMILY SSF50249 40 124 1.82E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 4.3E-172 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 Pfam PF10150 Ribonuclease E/G family 121 391 7.1E-94 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 CS348_14520 f66a85b20e31af3e5cc5515469769ac4 1068 Pfam PF00575 S1 RNA binding domain 36 118 3.6E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_13080 7dcfb5d1875808ba4b2a46d8b3ac5804 157 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 18 153 1.0E-47 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_13080 7dcfb5d1875808ba4b2a46d8b3ac5804 157 Gene3D G3DSA:1.25.40.10 16 157 2.7E-38 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_13080 7dcfb5d1875808ba4b2a46d8b3ac5804 157 SUPERFAMILY SSF48452 26 151 1.52E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_13080 7dcfb5d1875808ba4b2a46d8b3ac5804 157 PIRSF PIRSF003165 1 157 1.8E-53 T 13-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup CS348_14450 81b241f7f369aac16acc42800f0df567 174 Pfam PF00419 Fimbrial protein 30 174 4.5E-12 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_14450 81b241f7f369aac16acc42800f0df567 174 SUPERFAMILY SSF49401 35 174 1.44E-28 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_14450 81b241f7f369aac16acc42800f0df567 174 Gene3D G3DSA:2.60.40.1090 27 173 6.2E-29 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 SUPERFAMILY SSF46785 2 109 1.2E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 Gene3D G3DSA:3.40.190.10 160 263 2.1E-73 T 13-10-2018 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 Gene3D G3DSA:3.40.190.10 90 285 2.1E-73 T 13-10-2018 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 SUPERFAMILY SSF53850 87 291 2.33E-39 T 13-10-2018 CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 Pfam PF03466 LysR substrate binding domain 86 288 7.6E-42 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 Gene3D G3DSA:1.10.10.10 1 89 3.8E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_23985 269aa5222a9551dd085c4156f3b4c75e 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 7.6E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 171 179 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Gene3D G3DSA:3.40.50.300 232 452 3.8E-50 T 13-10-2018 CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Pfam PF12343 Cold shock protein DEAD box A 585 646 8.7E-11 T 13-10-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Pfam PF00270 DEAD/DEAH box helicase 48 212 5.2E-51 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Pfam PF03880 DbpA RNA binding domain 506 575 2.5E-20 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Pfam PF00271 Helicase conserved C-terminal domain 249 357 8.3E-29 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 SUPERFAMILY SSF52540 164 371 1.86E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 SMART SM00487 42 240 3.0E-64 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 SUPERFAMILY SSF52540 9 226 4.26E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 18 577 47.431 T 13-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Gene3D G3DSA:3.40.50.300 14 229 1.1E-75 T 13-10-2018 CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 SMART SM00490 276 357 1.5E-31 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_02840 ba92a80a9c7b35a7990aded995d9d8be 646 Gene3D G3DSA:3.30.70.330 503 576 3.2E-10 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CS348_23355 87d955200ad765d52cfc811666818ee0 213 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 10 211 2.8E-72 T 13-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 CS348_23355 87d955200ad765d52cfc811666818ee0 213 Pfam PF04717 Type VI secretion system, phage-baseplate injector 8 119 4.8E-46 T 13-10-2018 IPR006531 Gp5 N-terminal CS348_23355 87d955200ad765d52cfc811666818ee0 213 Gene3D G3DSA:2.40.50.230 1 90 1.4E-33 T 13-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily CS348_23355 87d955200ad765d52cfc811666818ee0 213 Gene3D G3DSA:2.60.220.40 91 163 9.4E-35 T 13-10-2018 CS348_00120 502f43fb61790a381c459af0334aed2f 185 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_00120 502f43fb61790a381c459af0334aed2f 185 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 177 6.1E-81 T 13-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 CS348_00120 502f43fb61790a381c459af0334aed2f 185 Gene3D G3DSA:3.40.30.10 36 185 5.0E-45 T 13-10-2018 CS348_00120 502f43fb61790a381c459af0334aed2f 185 Pfam PF08534 Redoxin 41 169 7.9E-23 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CS348_00120 502f43fb61790a381c459af0334aed2f 185 SUPERFAMILY SSF52833 46 177 3.28E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_20785 163d1c0d83e6f925905742133ce74a18 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 2.3E-127 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 CS348_20785 163d1c0d83e6f925905742133ce74a18 239 Gene3D G3DSA:3.40.50.1580 2 238 5.4E-77 T 13-10-2018 CS348_20785 163d1c0d83e6f925905742133ce74a18 239 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.243 T 13-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 CS348_20785 163d1c0d83e6f925905742133ce74a18 239 SUPERFAMILY SSF53167 3 234 1.02E-93 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CS348_20785 163d1c0d83e6f925905742133ce74a18 239 Pfam PF01048 Phosphorylase superfamily 15 218 2.8E-40 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CS348_20785 163d1c0d83e6f925905742133ce74a18 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 156 180 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 67 91 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 211 228 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 253 279 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 185 208 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 44 66 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 113 136 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 229 247 8.7E-69 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 PIRSF PIRSF000310 2 367 1.3E-134 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 224 303 7.4E-26 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 13 37 3.8E-6 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 3 365 1.3E-192 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 SUPERFAMILY SSF56770 45 302 2.47E-83 T 13-10-2018 CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 Gene3D G3DSA:4.10.480.10 224 315 7.8E-30 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 Gene3D G3DSA:3.40.50.700 43 222 5.0E-69 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily CS348_03540 752d0dc2934140847e7d14d4d8e2f32b 372 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 59 204 7.4E-32 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23965 a24f6247b48e664866c6d3ed13224804 253 Gene3D G3DSA:3.40.50.1580 1 253 2.9E-80 T 13-10-2018 CS348_23965 a24f6247b48e664866c6d3ed13224804 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_23965 a24f6247b48e664866c6d3ed13224804 253 SUPERFAMILY SSF53167 6 250 3.14E-72 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CS348_23965 a24f6247b48e664866c6d3ed13224804 253 Pfam PF01048 Phosphorylase superfamily 21 245 6.0E-39 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CS348_23965 a24f6247b48e664866c6d3ed13224804 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 4.1E-130 T 13-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 CS348_11895 a2627dcd0feb19f2b45659cd23941c7b 145 SUPERFAMILY SSF55804 3 142 8.24E-29 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_11895 a2627dcd0feb19f2b45659cd23941c7b 145 Gene3D G3DSA:3.40.930.10 2 144 4.8E-37 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_11895 a2627dcd0feb19f2b45659cd23941c7b 145 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 3 141 6.4E-26 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_17650 d06a64961a169f27b11136864b31a08c 65 Gene3D G3DSA:1.10.238.160 4 62 2.4E-7 T 13-10-2018 CS348_17650 d06a64961a169f27b11136864b31a08c 65 SUPERFAMILY SSF46955 5 59 5.31E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_17650 d06a64961a169f27b11136864b31a08c 65 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 5 53 5.8E-17 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 SUPERFAMILY SSF46785 2 81 5.44E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 Gene3D G3DSA:1.10.10.10 1 86 1.4E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 5.3E-12 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 SUPERFAMILY SSF53850 89 280 4.52E-18 T 13-10-2018 CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 Pfam PF03466 LysR substrate binding domain 134 280 1.8E-11 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 Gene3D G3DSA:3.40.190.10 92 275 1.1E-14 T 13-10-2018 CS348_00530 1c52d7c404d305e5fffa35456e6d15f8 300 Gene3D G3DSA:3.40.190.10 167 268 1.1E-14 T 13-10-2018 CS348_09780 405467f005d8aafe4fe2a65e4fe70cc6 231 Gene3D G3DSA:1.10.3210.50 1 231 2.8E-76 T 13-10-2018 CS348_09780 405467f005d8aafe4fe2a65e4fe70cc6 231 Pfam PF01966 HD domain 29 131 3.6E-10 T 13-10-2018 IPR006674 HD domain CS348_09780 405467f005d8aafe4fe2a65e4fe70cc6 231 SMART SM00471 22 141 5.5E-8 T 13-10-2018 IPR003607 HD/PDEase domain CS348_09780 405467f005d8aafe4fe2a65e4fe70cc6 231 SUPERFAMILY SSF109604 4 215 2.92E-59 T 13-10-2018 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 PIRSF PIRSF002401 1 375 1.7E-140 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 3.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 3.5E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 Pfam PF01018 GTP1/OBG 4 157 9.6E-59 T 13-10-2018 IPR006169 GTP1/OBG domain CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 SUPERFAMILY SSF52540 151 337 1.1E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 Gene3D G3DSA:2.70.210.12 1 158 3.5E-64 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 331 3.9E-148 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 3.5E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.247 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 SUPERFAMILY SSF82051 2 157 1.57E-56 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily CS348_02730 1d25ce7d279f9fa62752bc2d9af54487 390 Gene3D G3DSA:3.40.50.300 159 339 1.0E-53 T 13-10-2018 CS348_14065 93c4aabf77fcc3dde4c7c2f0740c4da2 377 SUPERFAMILY SSF50182 186 250 1.54E-13 T 13-10-2018 IPR010920 LSM domain superfamily CS348_14065 93c4aabf77fcc3dde4c7c2f0740c4da2 377 SUPERFAMILY SSF82861 100 184 3.01E-12 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CS348_14065 93c4aabf77fcc3dde4c7c2f0740c4da2 377 Pfam PF00924 Mechanosensitive ion channel 143 342 1.3E-52 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CS348_14065 93c4aabf77fcc3dde4c7c2f0740c4da2 377 SUPERFAMILY SSF82689 252 351 2.75E-12 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CS348_14065 93c4aabf77fcc3dde4c7c2f0740c4da2 377 Gene3D G3DSA:3.30.70.100 251 347 1.2E-10 T 13-10-2018 CS348_14065 93c4aabf77fcc3dde4c7c2f0740c4da2 377 Gene3D G3DSA:2.30.30.60 201 250 1.4E-11 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 Gene3D G3DSA:3.10.20.30 48 362 3.8E-153 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 SUPERFAMILY SSF81271 279 359 4.58E-36 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.609 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 SUPERFAMILY SSF52540 3 301 2.64E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 Gene3D G3DSA:3.40.50.300 4 278 3.8E-153 T 13-10-2018 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.3E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.3E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.3E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.3E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 PIRSF PIRSF006641 1 363 9.4E-158 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 Pfam PF01926 50S ribosome-binding GTPase 5 115 1.8E-21 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.5E-39 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 Gene3D G3DSA:1.10.150.300 120 200 3.8E-153 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 CS348_10905 54295c52d5312942f2e0b7e08e3cbc8b 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.2E-175 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 SUPERFAMILY SSF117892 196 233 1.31E-7 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 Pfam PF01145 SPFH domain / Band 7 family 22 243 4.1E-34 T 13-10-2018 IPR001107 Band 7 domain CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 PIRSF PIRSF005651 1 334 6.6E-110 T 13-10-2018 IPR010200 HflC GO:0016021|GO:0052547 CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 TIGRFAM TIGR01932 hflC: HflC protein 1 327 1.5E-148 T 13-10-2018 IPR010200 HflC GO:0016021|GO:0052547 CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 SMART SM00244 18 227 4.6E-45 T 13-10-2018 IPR001107 Band 7 domain CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 Gene3D G3DSA:3.30.479.30 53 229 4.4E-16 T 13-10-2018 CS348_21800 0c1d7b2bc96d56073e90fb9a76fb9ecd 334 SUPERFAMILY SSF117892 56 157 1.57E-16 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 SUPERFAMILY SSF52096 3 303 3.81E-67 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 5.2E-25 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 627 689 2.1E-5 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Gene3D G3DSA:3.90.226.10 1 311 1.3E-93 T 13-10-2018 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 SUPERFAMILY SSF51735 314 495 1.22E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 53.411 T 13-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 SUPERFAMILY SSF48179 622 714 2.55E-23 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 SUPERFAMILY SSF48179 495 638 5.7E-30 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Gene3D G3DSA:1.10.1040.50 497 709 2.0E-73 T 13-10-2018 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 7.8E-60 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 204 7.5E-39 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 Gene3D G3DSA:3.40.50.720 314 496 3.5E-66 T 13-10-2018 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 13-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_23895 5baaebb9405e2f641ad2229fc70d4992 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 13-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 Gene3D G3DSA:2.60.40.10 1 147 5.9E-52 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 SMART SM00642 170 576 6.8E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 SUPERFAMILY SSF51445 145 584 5.93E-127 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 17 104 6.5E-19 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 Gene3D G3DSA:2.60.40.1180 589 689 2.9E-5 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 12 689 0.0 T 13-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 Pfam PF00128 Alpha amylase, catalytic domain 193 536 1.4E-10 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 SUPERFAMILY SSF81296 12 157 1.48E-47 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 SUPERFAMILY SSF51011 592 689 1.44E-10 T 13-10-2018 CS348_12225 d0f1c5bed524734485eb877f80a2cc22 691 Gene3D G3DSA:3.20.20.80 148 588 2.5E-172 T 13-10-2018 CS348_14595 83a5a79a38b5b5dcf2291a787b5baf3d 140 Gene3D G3DSA:1.20.58.300 2 114 2.0E-11 T 13-10-2018 CS348_14595 83a5a79a38b5b5dcf2291a787b5baf3d 140 Pfam PF05130 FlgN protein 1 129 7.5E-20 T 13-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 CS348_14595 83a5a79a38b5b5dcf2291a787b5baf3d 140 SUPERFAMILY SSF140566 1 113 8.24E-15 T 13-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 CS348_01440 f19789513dd52e062f680465084c6dbf 75 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 6 50 9.4E-16 T 13-10-2018 CS348_01440 f19789513dd52e062f680465084c6dbf 75 SUPERFAMILY SSF143120 3 61 1.83E-16 T 13-10-2018 IPR036165 YefM-like superfamily CS348_01440 f19789513dd52e062f680465084c6dbf 75 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 52 2.7E-18 T 13-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CS348_01440 f19789513dd52e062f680465084c6dbf 75 Gene3D G3DSA:3.40.1620.10 3 51 1.4E-24 T 13-10-2018 CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 81 460 1.7E-80 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 Gene3D G3DSA:3.10.105.10 300 517 4.4E-142 T 13-10-2018 CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 SUPERFAMILY SSF53850 38 539 1.81E-132 T 13-10-2018 CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 Gene3D G3DSA:3.90.76.10 48 220 4.4E-142 T 13-10-2018 CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 Gene3D G3DSA:3.40.190.10 221 529 4.4E-142 T 13-10-2018 CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 86 108 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CS348_11480 40e87e113c6a341236b48514f5f2ecc9 549 PIRSF PIRSF002741 1 545 7.1E-94 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 Pfam PF03170 Bacterial cellulose synthase subunit 58 667 4.2E-226 T 13-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 Gene3D G3DSA:2.60.120.260 60 190 1.3E-29 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 300 321 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 553 573 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 219 242 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 383 404 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 87 108 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 516 535 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 PRINTS PR01440 Cellulose synthase subunit B signature 177 198 1.8E-27 T 13-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 CS348_01140 c528b0a099c77bc02b3fdd250b34a061 766 Gene3D G3DSA:2.60.120.260 349 508 2.5E-25 T 13-10-2018 IPR008979 Galactose-binding-like domain superfamily CS348_23840 c10944e958e5511ad2f36d0f08146f0b 171 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 5 164 2.9E-54 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 CS348_23840 c10944e958e5511ad2f36d0f08146f0b 171 SUPERFAMILY SSF52540 2 166 1.05E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23840 c10944e958e5511ad2f36d0f08146f0b 171 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 5 139 5.3E-49 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 CS348_23840 c10944e958e5511ad2f36d0f08146f0b 171 Gene3D G3DSA:2.20.25.120 48 80 8.1E-62 T 13-10-2018 CS348_23840 c10944e958e5511ad2f36d0f08146f0b 171 Gene3D G3DSA:3.40.50.300 5 161 8.1E-62 T 13-10-2018 CS348_06840 4b020fa8fa24fc71f34866f4878ace07 128 Pfam PF01592 NifU-like N terminal domain 2 126 1.9E-57 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CS348_06840 4b020fa8fa24fc71f34866f4878ace07 128 Gene3D G3DSA:3.90.1010.10 1 128 2.3E-60 T 13-10-2018 CS348_06840 4b020fa8fa24fc71f34866f4878ace07 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 126 6.6E-72 T 13-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CS348_06840 4b020fa8fa24fc71f34866f4878ace07 128 SUPERFAMILY SSF82649 1 125 2.33E-49 T 13-10-2018 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Gene3D G3DSA:3.40.50.300 111 355 9.1E-84 T 13-10-2018 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Pfam PF13604 AAA domain 155 316 1.6E-31 T 13-10-2018 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 SUPERFAMILY SSF52540 281 603 1.54E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 SMART SM00382 163 320 0.0045 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Pfam PF13538 UvrD-like helicase C-terminal domain 534 579 1.1E-14 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Gene3D G3DSA:3.40.50.300 365 475 9.0E-30 T 13-10-2018 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Gene3D G3DSA:3.40.50.300 476 593 2.1E-26 T 13-10-2018 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Gene3D G3DSA:1.10.10.1020 1 110 1.0E-36 T 13-10-2018 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 16 602 53.231 T 13-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 SUPERFAMILY SSF52540 6 360 1.45E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05035 701e6f6f8676aecb4786a2f227cdc07c 611 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 9 602 8.3E-193 T 13-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 CS348_07925 a72735769cec3ed6580dbc4c5ab3c59a 147 SUPERFAMILY SSF55804 2 145 1.57E-35 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_07925 a72735769cec3ed6580dbc4c5ab3c59a 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 145 4.9E-34 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_07925 a72735769cec3ed6580dbc4c5ab3c59a 147 Gene3D G3DSA:3.40.930.10 2 147 4.9E-48 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_13765 ce9ebf0ab328c8de1997d7db552b475e 113 Gene3D G3DSA:3.30.1450.10 17 113 1.5E-30 T 13-10-2018 IPR037873 BamE-like CS348_13765 ce9ebf0ab328c8de1997d7db552b475e 113 Pfam PF04355 SmpA / OmlA family 33 96 6.0E-11 T 13-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 CS348_04130 bcff77802b055a2d675b1e13856c367a 196 Gene3D G3DSA:2.60.40.1090 32 196 3.5E-33 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_04130 bcff77802b055a2d675b1e13856c367a 196 SUPERFAMILY SSF49401 35 196 5.47E-32 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_04130 bcff77802b055a2d675b1e13856c367a 196 Pfam PF00419 Fimbrial protein 37 195 9.7E-16 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_22625 02c73135f40422f57fd48380bda6e135 252 SUPERFAMILY SSF46785 5 61 7.72E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22625 02c73135f40422f57fd48380bda6e135 252 SMART SM01134 72 233 4.0E-58 T 13-10-2018 CS348_22625 02c73135f40422f57fd48380bda6e135 252 SUPERFAMILY SSF100950 74 232 5.78E-28 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_22625 02c73135f40422f57fd48380bda6e135 252 Pfam PF00455 DeoR C terminal sensor domain 74 232 2.7E-43 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_22625 02c73135f40422f57fd48380bda6e135 252 Gene3D G3DSA:1.10.10.10 1 56 1.3E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_22625 02c73135f40422f57fd48380bda6e135 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_22625 02c73135f40422f57fd48380bda6e135 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.0E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_22625 02c73135f40422f57fd48380bda6e135 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.0E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_22625 02c73135f40422f57fd48380bda6e135 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 5.9E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_22625 02c73135f40422f57fd48380bda6e135 252 SMART SM00420 6 58 2.7E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_07295 b92d1e47fbf24d2cfe3878d1f51b81e7 298 PIRSF PIRSF018982 49 298 1.1E-102 T 13-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 CS348_07295 b92d1e47fbf24d2cfe3878d1f51b81e7 298 Gene3D G3DSA:1.10.30.40 47 113 7.5E-33 T 13-10-2018 CS348_07295 b92d1e47fbf24d2cfe3878d1f51b81e7 298 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 68 296 1.8E-79 T 13-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 CS348_07295 b92d1e47fbf24d2cfe3878d1f51b81e7 298 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 60 297 41.195 T 13-10-2018 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 CS348_07295 b92d1e47fbf24d2cfe3878d1f51b81e7 298 Gene3D G3DSA:3.40.50.11240 115 296 5.5E-70 T 13-10-2018 CS348_03320 292242b64209caab08c0cfdd8f543889 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_03320 292242b64209caab08c0cfdd8f543889 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 15 199 1.1E-78 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 CS348_03320 292242b64209caab08c0cfdd8f543889 210 Pfam PF00293 NUDIX domain 59 179 8.1E-13 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_03320 292242b64209caab08c0cfdd8f543889 210 Gene3D G3DSA:3.90.79.10 1 209 6.7E-67 T 13-10-2018 CS348_03320 292242b64209caab08c0cfdd8f543889 210 SUPERFAMILY SSF55811 3 208 3.38E-52 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 SUPERFAMILY SSF116726 291 374 4.45E-11 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Pfam PF06826 Predicted Permease Membrane Region 385 554 9.7E-43 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Pfam PF06826 Predicted Permease Membrane Region 17 182 7.4E-40 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Gene3D G3DSA:3.30.70.1450 223 286 6.2E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Pfam PF02080 TrkA-C domain 229 281 1.4E-8 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Pfam PF02080 TrkA-C domain 305 371 2.5E-8 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 541 5.6E-45 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 1.1E-37 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Gene3D G3DSA:3.30.70.1450 299 373 4.2E-6 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 SUPERFAMILY SSF116726 227 282 1.7E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_15965 672f1b70a0ea1151ad26d073eabfcdcc 561 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 57.939 T 13-10-2018 IPR023017 Transport protein YbjL, putative CS348_08020 8e849b564e7e235a79685814f44e3e46 600 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 105 160 2.0E-26 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 SUPERFAMILY SSF143243 25 229 1.83E-57 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 Gene3D G3DSA:1.10.645.20 214 600 2.0E-142 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 49 176 3.0E-43 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 Gene3D G3DSA:3.30.460.80 8 157 2.4E-31 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 329 600 6.9E-102 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 SUPERFAMILY SSF56762 225 600 4.97E-119 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 16 600 72.437 T 13-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 252 263 - T 13-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 215 600 7.6E-177 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 211 600 41.937 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08020 8e849b564e7e235a79685814f44e3e46 600 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 50 177 4.7E-39 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 Pfam PF04055 Radical SAM superfamily 57 226 3.2E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 PIRSF PIRSF000167 3 454 1.9E-181 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 SMART SM00729 52 272 9.0E-57 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 SUPERFAMILY SSF102114 6 444 6.87E-147 T 13-10-2018 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 Gene3D G3DSA:1.10.10.920 364 457 1.0E-37 T 13-10-2018 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 457 2.5E-236 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 Gene3D G3DSA:3.80.30.20 1 363 6.4E-146 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_23785 fa35e1b165284479cdec91aa271c0db0 457 Pfam PF06969 HemN C-terminal domain 363 431 7.2E-10 T 13-10-2018 IPR010723 HemN, C-terminal CS348_00915 0d85a5135c58add72285756147361c58 484 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_00915 0d85a5135c58add72285756147361c58 484 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 1.3E-81 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_00915 0d85a5135c58add72285756147361c58 484 TIGRFAM TIGR01312 XylB: xylulokinase 3 477 2.3E-188 T 13-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 CS348_00915 0d85a5135c58add72285756147361c58 484 SUPERFAMILY SSF53067 2 242 3.02E-72 T 13-10-2018 CS348_00915 0d85a5135c58add72285756147361c58 484 Gene3D G3DSA:3.30.420.40 242 484 3.7E-96 T 13-10-2018 CS348_00915 0d85a5135c58add72285756147361c58 484 Gene3D G3DSA:3.30.420.40 1 241 7.2E-95 T 13-10-2018 CS348_00915 0d85a5135c58add72285756147361c58 484 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 347 367 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_00915 0d85a5135c58add72285756147361c58 484 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 249 435 1.9E-31 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_00915 0d85a5135c58add72285756147361c58 484 PIRSF PIRSF000538 1 484 4.2E-137 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_00915 0d85a5135c58add72285756147361c58 484 SUPERFAMILY SSF53067 242 482 1.01E-64 T 13-10-2018 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 6.1E-189 T 13-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 SUPERFAMILY SSF51735 141 305 5.03E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 SMART SM00829 12 338 2.8E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.899 T 13-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 3.4E-27 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 SUPERFAMILY SSF50129 1 173 8.52E-54 T 13-10-2018 IPR011032 GroES-like superfamily CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 Gene3D G3DSA:3.90.180.10 20 328 3.3E-120 T 13-10-2018 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 3.6E-32 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_00675 0212a6f186ffcb6835f5f63db3f0393f 341 Gene3D G3DSA:3.40.50.720 153 286 3.3E-120 T 13-10-2018 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Gene3D G3DSA:3.40.50.2300 676 795 1.8E-20 T 13-10-2018 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 PIRSF PIRSF036437 1 911 0.0 T 13-10-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SUPERFAMILY SSF52172 678 806 2.85E-24 T 13-10-2018 IPR011006 CheY-like superfamily CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 660 4.6E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Pfam PF00072 Response regulator receiver domain 683 792 2.3E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Gene3D G3DSA:1.20.120.160 796 906 1.4E-16 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SUPERFAMILY SSF47226 805 906 5.5E-16 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 TIGRFAM TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS 5 805 0.0 T 13-10-2018 IPR014302 Signal transduction histidine kinase, TMAO sensor TorS GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SMART SM00387 555 662 5.4E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SUPERFAMILY SSF55874 498 663 7.6E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Gene3D G3DSA:1.20.58.920 48 321 3.1E-91 T 13-10-2018 IPR038188 TorS, sensor domain superfamily CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 622 640 3.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 605 3.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 619 3.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 PRINTS PR00344 Bacterial sensor protein C-terminal signature 646 659 3.8E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Gene3D G3DSA:3.30.565.10 512 663 1.6E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Gene3D G3DSA:1.10.287.130 400 507 3.0E-25 T 13-10-2018 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Pfam PF00512 His Kinase A (phospho-acceptor) domain 444 507 1.0E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SUPERFAMILY SSF47384 427 509 5.3E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 Pfam PF01627 Hpt domain 826 882 7.5E-10 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SMART SM00304 355 408 7.4E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SMART SM00448 680 792 5.8E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SMART SM00388 444 509 2.9E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_00055 73d5c6fec35adb317ffa68eba2eb567b 911 SMART SM00073 817 905 6.3E-4 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_23490 46298e82821691bdef777d2592646da6 232 Gene3D G3DSA:1.10.10.10 132 232 9.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_23490 46298e82821691bdef777d2592646da6 232 Gene3D G3DSA:3.40.50.2300 1 131 2.7E-42 T 13-10-2018 CS348_23490 46298e82821691bdef777d2592646da6 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 2.5E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_23490 46298e82821691bdef777d2592646da6 232 SUPERFAMILY SSF52172 2 188 9.96E-42 T 13-10-2018 IPR011006 CheY-like superfamily CS348_23490 46298e82821691bdef777d2592646da6 232 SMART SM00862 152 228 2.1E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_23490 46298e82821691bdef777d2592646da6 232 Pfam PF00072 Response regulator receiver domain 4 112 1.8E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_23490 46298e82821691bdef777d2592646da6 232 SMART SM00448 2 111 6.6E-46 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08670 cbc844925ede416695df22af4f98cb41 222 Gene3D G3DSA:3.30.1130.10 87 222 1.1E-54 T 13-10-2018 CS348_08670 cbc844925ede416695df22af4f98cb41 222 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 36 219 33.863 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CS348_08670 cbc844925ede416695df22af4f98cb41 222 SUPERFAMILY SSF55620 4 221 8.89E-77 T 13-10-2018 CS348_08670 cbc844925ede416695df22af4f98cb41 222 Gene3D G3DSA:1.10.286.10 2 86 8.0E-37 T 13-10-2018 CS348_08670 cbc844925ede416695df22af4f98cb41 222 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 40 220 5.7E-86 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CS348_08670 cbc844925ede416695df22af4f98cb41 222 Pfam PF01227 GTP cyclohydrolase I 41 218 3.5E-63 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CS348_08670 cbc844925ede416695df22af4f98cb41 222 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 146 156 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CS348_08670 cbc844925ede416695df22af4f98cb41 222 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 98 114 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 56 126 3.5E-26 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 53 128 8.6E-34 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 49 2.0E-20 T 13-10-2018 IPR031576 Flagellar motor switch protein FliN, N-terminal CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 Gene3D G3DSA:2.30.330.10 46 137 1.6E-35 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 117 1.8E-30 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 56 72 1.8E-30 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 73 89 1.8E-30 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 PRINTS PR00956 Flagellar motor switch protein FliN signature 89 102 1.8E-30 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_09855 b1276cd0e5b0d41b0e432e2d9fea30fb 137 SUPERFAMILY SSF101801 54 135 4.32E-27 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 Gene3D G3DSA:3.90.930.12 83 177 5.8E-40 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 SUPERFAMILY SSF56053 83 177 8.06E-36 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 Gene3D G3DSA:3.90.930.12 1 82 6.3E-30 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 Pfam PF00347 Ribosomal protein L6 90 164 9.1E-19 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 Pfam PF00347 Ribosomal protein L6 11 82 2.1E-18 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 7.0E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 7.0E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 7.0E-34 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 8.9E-73 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.45 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 SUPERFAMILY SSF56053 1 82 1.44E-23 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02085 4af8311a85e1ed50d3a11ab4e2fe17b2 177 PIRSF PIRSF002162 1 177 2.3E-43 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_10195 12e69b3595ba4d0b26001fbb1f3aa587 189 Gene3D G3DSA:3.10.180.10 1 188 1.3E-80 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_10195 12e69b3595ba4d0b26001fbb1f3aa587 189 Pfam PF06185 YecM protein 10 185 8.1E-70 T 13-10-2018 IPR010393 Protein of unknown function DUF991 CS348_10195 12e69b3595ba4d0b26001fbb1f3aa587 189 SUPERFAMILY SSF54593 2 186 1.35E-67 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 240 426 9.2E-78 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Gene3D G3DSA:3.30.70.1170 173 230 1.6E-28 T 13-10-2018 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 4.5E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 4.5E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 4.5E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 4.5E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 4.5E-31 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 13-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Pfam PF01029 NusB family 6 127 4.9E-25 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 429 1.7E-185 T 13-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Gene3D G3DSA:3.40.50.150 231 429 1.8E-71 T 13-10-2018 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Gene3D G3DSA:1.10.940.10 1 145 5.3E-52 T 13-10-2018 IPR035926 NusB-like superfamily CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 SUPERFAMILY SSF53335 142 429 1.08E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 72.051 T 13-10-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 Gene3D G3DSA:1.10.287.730 146 172 6.3E-17 T 13-10-2018 CS348_02170 74e26c1e08b35c268d0769f4be002b36 429 SUPERFAMILY SSF48013 6 149 1.6E-34 T 13-10-2018 IPR035926 NusB-like superfamily CS348_16100 66c20009e12bf270489d1e729fda1681 313 Pfam PF01112 Asparaginase 5 311 8.7E-120 T 13-10-2018 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 CS348_16100 66c20009e12bf270489d1e729fda1681 313 SUPERFAMILY SSF56235 4 309 7.2E-101 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_16100 66c20009e12bf270489d1e729fda1681 313 Gene3D G3DSA:3.60.20.30 179 313 2.7E-59 T 13-10-2018 CS348_20060 ceed33b1b15332d7e379c170b20c1964 289 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 5 223 9.3E-77 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_20060 ceed33b1b15332d7e379c170b20c1964 289 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 2 287 2.9E-148 T 13-10-2018 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 CS348_20060 ceed33b1b15332d7e379c170b20c1964 289 PIRSF PIRSF015582 1 289 5.7E-73 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like CS348_20060 ceed33b1b15332d7e379c170b20c1964 289 Gene3D G3DSA:3.20.20.60 1 286 5.0E-87 T 13-10-2018 CS348_20060 ceed33b1b15332d7e379c170b20c1964 289 SUPERFAMILY SSF51621 1 234 6.98E-61 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 SMART SM00739 127 154 7.9E-7 T 13-10-2018 IPR005824 KOW CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 SUPERFAMILY SSF82679 6 116 4.32E-40 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 Gene3D G3DSA:3.30.70.940 1 123 6.2E-48 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 Pfam PF00467 KOW motif 130 162 5.5E-8 T 13-10-2018 IPR005824 KOW CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 Gene3D G3DSA:2.30.30.30 124 181 2.0E-27 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 Pfam PF02357 Transcription termination factor nusG 7 112 1.9E-27 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.812 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 SUPERFAMILY SSF50104 125 180 4.66E-20 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 SMART SM00738 6 115 8.6E-51 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_22865 728829054ec6249f1c5d4249b2b2eca4 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 2.8E-71 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CS348_08125 15cd1df37048201f5f4f95a0bab5de90 85 Gene3D G3DSA:2.40.50.650 1 85 2.4E-34 T 13-10-2018 IPR038679 Signal transduction protein PmrD superfamily CS348_08125 15cd1df37048201f5f4f95a0bab5de90 85 Pfam PF11183 Polymyxin resistance protein PmrD 1 82 2.7E-41 T 13-10-2018 CS348_08125 15cd1df37048201f5f4f95a0bab5de90 85 ProDom PD028730 PMRD RESISTANCE POLYMYXIN B ANTIBIOTIC 1 82 3.0E-43 T 13-10-2018 IPR020146 Signal transduction protein PmrD CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 6 183 4.0E-15 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 SUPERFAMILY SSF56784 4 211 2.94E-45 T 13-10-2018 IPR036412 HAD-like superfamily CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 9.2E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 9.2E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 9.2E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 Gene3D G3DSA:3.40.50.1000 7 193 1.0E-44 T 13-10-2018 IPR023214 HAD superfamily CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 183 7.0E-22 T 13-10-2018 CS348_24560 683bcfd7796c1bc5c516d2034acab251 221 Gene3D G3DSA:1.10.150.240 19 86 1.0E-44 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_00770 66e37112740c6a4627e162efc4fa7f09 196 Gene3D G3DSA:1.20.120.330 22 190 5.4E-62 T 13-10-2018 CS348_00770 66e37112740c6a4627e162efc4fa7f09 196 Pfam PF05068 Mannitol repressor 30 188 7.5E-61 T 13-10-2018 IPR007761 Mannitol repressor MtlR-like CS348_00770 66e37112740c6a4627e162efc4fa7f09 196 SUPERFAMILY SSF158668 27 188 1.57E-57 T 13-10-2018 IPR038026 MtlR-like superfamily CS348_05165 c72c188562b4d6dc55306fcb60931959 282 PIRSF PIRSF004750 6 282 1.5E-129 T 13-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 Pfam PF14489 QueF-like protein 196 269 4.6E-27 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 282 168.995 T 13-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 Gene3D G3DSA:3.30.1130.10 21 139 4.8E-44 T 13-10-2018 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 1.1E-48 T 13-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 SUPERFAMILY SSF55620 186 266 3.34E-10 T 13-10-2018 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 Gene3D G3DSA:3.30.1130.10 144 282 2.8E-60 T 13-10-2018 CS348_05165 c72c188562b4d6dc55306fcb60931959 282 TIGRFAM TIGR03138 QueF: queuine synthase 11 282 8.3E-129 T 13-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CS348_19625 8f7bce42022168f5e0814c56f124aa54 206 SUPERFAMILY SSF52540 1 190 7.9E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19625 8f7bce42022168f5e0814c56f124aa54 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 27.436 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CS348_19625 8f7bce42022168f5e0814c56f124aa54 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 5 190 3.5E-68 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CS348_19625 8f7bce42022168f5e0814c56f124aa54 206 Gene3D G3DSA:3.40.50.300 1 206 4.3E-71 T 13-10-2018 CS348_19625 8f7bce42022168f5e0814c56f124aa54 206 Pfam PF01121 Dephospho-CoA kinase 4 177 5.5E-74 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CS348_08930 9533af18f4b608b8cc14712f7db8b41f 321 Pfam PF00294 pfkB family carbohydrate kinase 19 306 1.3E-45 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_08930 9533af18f4b608b8cc14712f7db8b41f 321 Gene3D G3DSA:3.40.1190.20 12 317 3.4E-55 T 13-10-2018 IPR029056 Ribokinase-like CS348_08930 9533af18f4b608b8cc14712f7db8b41f 321 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 263 276 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_08930 9533af18f4b608b8cc14712f7db8b41f 321 SUPERFAMILY SSF53613 18 305 1.87E-51 T 13-10-2018 IPR029056 Ribokinase-like CS348_08930 9533af18f4b608b8cc14712f7db8b41f 321 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 53 77 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 33 52 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 52 68 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 259 285 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 409 426 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 157 178 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 357 376 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PRINTS PR01806 Virulence factor MviN signature 133 157 1.7E-87 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 509 3.9E-175 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 Pfam PF03023 MviN-like protein 28 478 1.5E-158 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.489 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_14600 bbfefc5697d3a692f27d2806f49fe572 511 PIRSF PIRSF002869 1 511 1.1E-181 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CS348_00830 b89400331ac1e556beb90b90eebeb4d8 286 Pfam PF01261 Xylose isomerase-like TIM barrel 25 234 1.9E-36 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_00830 b89400331ac1e556beb90b90eebeb4d8 286 SUPERFAMILY SSF51658 12 275 7.2E-57 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_00830 b89400331ac1e556beb90b90eebeb4d8 286 Gene3D G3DSA:3.20.20.150 1 285 4.0E-78 T 13-10-2018 CS348_00830 b89400331ac1e556beb90b90eebeb4d8 286 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 2 286 7.3E-154 T 13-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 CS348_13250 cbc11cf4f4fd9028c1aa5edc8b573972 136 Pfam PF03061 Thioesterase superfamily 50 127 2.4E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CS348_13250 cbc11cf4f4fd9028c1aa5edc8b573972 136 Gene3D G3DSA:3.10.129.10 1 136 1.6E-61 T 13-10-2018 CS348_13250 cbc11cf4f4fd9028c1aa5edc8b573972 136 Hamap MF_01936 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [menI]. 1 136 46.613 T 13-10-2018 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI GO:0009234|GO:0061522 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 CS348_13250 cbc11cf4f4fd9028c1aa5edc8b573972 136 SUPERFAMILY SSF54637 3 135 6.03E-29 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_13250 cbc11cf4f4fd9028c1aa5edc8b573972 136 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 134 1.0E-45 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82866 840 1029 3.53E-44 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82714 724 810 9.16E-23 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_02255 8e21057f2b1523531c489d86de434617 1037 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1035 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:3.30.70.1440 675 865 0.0 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82693 38 132 4.13E-28 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:1.20.1640.10 516 1026 0.0 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:3.30.70.1430 38 821 0.0 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82693 135 330 4.76E-28 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82693 566 670 2.46E-34 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82693 673 858 1.73E-25 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.9E-116 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82866 296 497 8.11E-48 T 13-10-2018 CS348_02255 8e21057f2b1523531c489d86de434617 1037 SUPERFAMILY SSF82714 182 271 3.66E-19 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_02255 8e21057f2b1523531c489d86de434617 1037 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 13-10-2018 CS348_15445 d11b671ab67dcd72e2cc15643f401ad3 234 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 35 203 5.3E-71 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 CS348_15445 d11b671ab67dcd72e2cc15643f401ad3 234 Gene3D G3DSA:2.30.210.20 2 61 4.6E-29 T 13-10-2018 CS348_15445 d11b671ab67dcd72e2cc15643f401ad3 234 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 32 214 2.5E-85 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 CS348_15445 d11b671ab67dcd72e2cc15643f401ad3 234 SUPERFAMILY SSF55729 2 229 1.69E-93 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_15445 d11b671ab67dcd72e2cc15643f401ad3 234 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 234 99.235 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 CS348_15445 d11b671ab67dcd72e2cc15643f401ad3 234 Gene3D G3DSA:3.40.630.70 62 234 8.3E-71 T 13-10-2018 CS348_22795 bb3f68a6dcbced58010781ed2f8acc80 252 SUPERFAMILY SSF69572 2 245 1.57E-81 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CS348_22795 bb3f68a6dcbced58010781ed2f8acc80 252 Pfam PF00899 ThiF family 9 240 8.7E-65 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CS348_22795 bb3f68a6dcbced58010781ed2f8acc80 252 Gene3D G3DSA:3.40.50.720 1 251 3.0E-105 T 13-10-2018 CS348_08135 458e010c80c72453d314d1f3c731f771 111 Gene3D G3DSA:1.10.3730.20 3 111 1.0E-10 T 13-10-2018 CS348_08135 458e010c80c72453d314d1f3c731f771 111 SUPERFAMILY SSF103481 6 107 3.4E-16 T 13-10-2018 CS348_08135 458e010c80c72453d314d1f3c731f771 111 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 1 111 29.878 T 13-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE CS348_08135 458e010c80c72453d314d1f3c731f771 111 Pfam PF00892 EamA-like transporter family 6 107 1.5E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_08755 c803e310f0fb7f28567af1581a36c09e 233 Gene3D G3DSA:3.90.850.10 1 233 3.2E-83 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_08755 c803e310f0fb7f28567af1581a36c09e 233 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 28 230 2.0E-49 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 CS348_08755 c803e310f0fb7f28567af1581a36c09e 233 SUPERFAMILY SSF56529 23 233 1.31E-65 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_21530 e93b0da02996c42637feea387db06d36 332 PIRSF PIRSF500210 1 330 4.4E-124 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 192 3.4E-83 T 13-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 PIRSF PIRSF000904 1 331 2.4E-120 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 268 280 - T 13-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 Gene3D G3DSA:3.40.190.80 195 332 7.4E-61 T 13-10-2018 CS348_21530 e93b0da02996c42637feea387db06d36 332 Gene3D G3DSA:3.30.540.10 1 193 1.1E-74 T 13-10-2018 CS348_21530 e93b0da02996c42637feea387db06d36 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 177 200 7.9E-71 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 302 327 7.9E-71 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 7.9E-71 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 146 169 7.9E-71 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 203 230 7.9E-71 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 7.9E-71 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_21530 e93b0da02996c42637feea387db06d36 332 SUPERFAMILY SSF56655 2 326 3.14E-112 T 13-10-2018 CS348_21530 e93b0da02996c42637feea387db06d36 332 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 328 42.106 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CS348_14230 2f3da2f21505b744439cae09958209d1 153 PRINTS PR00502 NUDIX hydrolase family signature 31 45 4.3E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_14230 2f3da2f21505b744439cae09958209d1 153 PRINTS PR00502 NUDIX hydrolase family signature 45 60 4.3E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_14230 2f3da2f21505b744439cae09958209d1 153 SUPERFAMILY SSF55811 2 132 3.25E-30 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_14230 2f3da2f21505b744439cae09958209d1 153 Gene3D G3DSA:3.90.79.10 1 153 7.3E-49 T 13-10-2018 CS348_14230 2f3da2f21505b744439cae09958209d1 153 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_14230 2f3da2f21505b744439cae09958209d1 153 Pfam PF00293 NUDIX domain 4 115 6.5E-19 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_15300 e775e19cc25618b50f1c07f4a881dc7d 325 SUPERFAMILY SSF52540 46 163 3.39E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15300 e775e19cc25618b50f1c07f4a881dc7d 325 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 40.714 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 CS348_15300 e775e19cc25618b50f1c07f4a881dc7d 325 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 322 1.6E-116 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 CS348_15300 e775e19cc25618b50f1c07f4a881dc7d 325 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 319 1.7E-113 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 CS348_15960 f053c0a02d40c5379e2ba11ae67faf94 125 Pfam PF11045 Putative inner membrane protein of Enterobacteriaceae 4 117 3.0E-46 T 13-10-2018 IPR020368 Uncharacterised protein family YbjM GO:0016021 CS348_15960 f053c0a02d40c5379e2ba11ae67faf94 125 ProDom PD079046 MEMBRANE INNER YBJM TRANSMEMBRANE 1 117 3.0E-51 T 13-10-2018 IPR020368 Uncharacterised protein family YbjM GO:0016021 CS348_24285 953690c20826159f915851e0618a75db 514 SUPERFAMILY SSF55021 420 512 2.52E-25 T 13-10-2018 CS348_24285 953690c20826159f915851e0618a75db 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CS348_24285 953690c20826159f915851e0618a75db 514 Gene3D G3DSA:3.40.50.1100 25 327 1.4E-129 T 13-10-2018 CS348_24285 953690c20826159f915851e0618a75db 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 1.3E-267 T 13-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CS348_24285 953690c20826159f915851e0618a75db 514 Gene3D G3DSA:3.40.1020.10 338 514 1.7E-72 T 13-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CS348_24285 953690c20826159f915851e0618a75db 514 SUPERFAMILY SSF53686 15 364 1.01E-101 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_24285 953690c20826159f915851e0618a75db 514 Gene3D G3DSA:3.40.50.1100 61 157 1.4E-129 T 13-10-2018 CS348_24285 953690c20826159f915851e0618a75db 514 SUPERFAMILY SSF55021 336 423 5.04E-27 T 13-10-2018 CS348_24285 953690c20826159f915851e0618a75db 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 1.7E-27 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CS348_24285 953690c20826159f915851e0618a75db 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 3.0E-31 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CS348_24285 953690c20826159f915851e0618a75db 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 29 316 3.0E-78 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 Pfam PF03472 Autoinducer binding domain 23 160 2.0E-35 T 13-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 SMART SM00421 177 234 1.0E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 ProSitePatterns PS00622 LuxR-type HTH domain signature. 194 221 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 Gene3D G3DSA:3.30.450.80 1 176 9.8E-63 T 13-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 Gene3D G3DSA:1.10.10.10 177 240 1.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 194 2.8E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 210 222 2.8E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 194 210 2.8E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 SUPERFAMILY SSF75516 8 169 9.94E-37 T 13-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 SUPERFAMILY SSF46894 166 240 5.44E-18 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_09985 d33881096c5fa37a3de675b251ee40a1 240 Pfam PF00196 Bacterial regulatory proteins, luxR family 179 234 3.6E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SUPERFAMILY SSF50249 35 197 1.05E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SMART SM00873 212 385 3.1E-99 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Pfam PF03483 B3/4 domain 212 385 2.4E-71 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SMART SM00874 403 471 3.4E-31 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SUPERFAMILY SSF56037 195 394 2.62E-78 T 13-10-2018 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SMART SM00896 701 794 9.1E-46 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Pfam PF01588 Putative tRNA binding domain 45 145 4.0E-28 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SUPERFAMILY SSF46955 403 475 7.32E-21 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Gene3D G3DSA:3.30.930.10 485 693 2.1E-65 T 13-10-2018 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Gene3D G3DSA:3.30.56.10 401 475 2.4E-30 T 13-10-2018 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 1.0E-300 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 49.444 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Gene3D G3DSA:2.40.50.140 39 154 1.2E-75 T 13-10-2018 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Gene3D G3DSA:3.30.56.10 7 180 1.2E-75 T 13-10-2018 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SUPERFAMILY SSF54991 696 794 3.79E-31 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 1.5E-21 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Gene3D G3DSA:3.50.40.10 197 395 6.6E-84 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.3E-28 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 SUPERFAMILY SSF55681 467 690 4.77E-56 T 13-10-2018 CS348_13630 466bfe68ba4a668775007934ea4c2353 795 Gene3D G3DSA:3.30.70.380 702 795 5.9E-32 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 CS348_11460 dae35e16dae3d3bfaa748320a7811bc2 141 SUPERFAMILY SSF50203 18 135 1.1E-37 T 13-10-2018 IPR008992 Enterotoxin GO:0009405 CS348_11460 dae35e16dae3d3bfaa748320a7811bc2 141 Gene3D G3DSA:2.40.50.110 23 141 1.1E-48 T 13-10-2018 CS348_09415 15479ec6936333c4c20003006452909c 336 SUPERFAMILY SSF143744 197 330 7.59E-36 T 13-10-2018 IPR038084 GlcG-like domain superfamily CS348_09415 15479ec6936333c4c20003006452909c 336 Gene3D G3DSA:3.30.450.150 192 336 5.0E-53 T 13-10-2018 IPR038084 GlcG-like domain superfamily CS348_09415 15479ec6936333c4c20003006452909c 336 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 177 1.6E-49 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_09415 15479ec6936333c4c20003006452909c 336 PIRSF PIRSF036411 1 333 7.2E-91 T 13-10-2018 IPR009221 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, bifunctional PduO CS348_09415 15479ec6936333c4c20003006452909c 336 Gene3D G3DSA:1.20.1200.10 12 191 1.4E-52 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_09415 15479ec6936333c4c20003006452909c 336 Pfam PF03928 Haem-degrading 202 327 1.8E-25 T 13-10-2018 IPR005624 Haem-degrading CS348_09415 15479ec6936333c4c20003006452909c 336 Pfam PF01923 Cobalamin adenosyltransferase 3 166 2.3E-54 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_09415 15479ec6936333c4c20003006452909c 336 SUPERFAMILY SSF89028 1 172 1.22E-53 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_09415 15479ec6936333c4c20003006452909c 336 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 124 9.0E-56 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Gene3D G3DSA:1.10.10.10 576 660 1.6E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Pfam PF04545 Sigma-70, region 4 594 647 1.1E-18 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Pfam PF04542 Sigma-70 region 2 426 495 1.9E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Pfam PF04546 Sigma-70, non-essential region 184 395 2.4E-75 T 13-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 450 463 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 422 658 1.6E-120 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 619 645 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 SUPERFAMILY SSF88659 556 658 2.88E-25 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_03175 b9a8b43f30a230cc986396678e421de5 660 SUPERFAMILY SSF88946 160 493 3.53E-104 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 PRINTS PR00046 Major sigma-70 factor signature 474 482 8.8E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 PRINTS PR00046 Major sigma-70 factor signature 634 645 8.8E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 PRINTS PR00046 Major sigma-70 factor signature 598 610 8.8E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 PRINTS PR00046 Major sigma-70 factor signature 450 463 8.8E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 PRINTS PR00046 Major sigma-70 factor signature 619 634 8.8E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Pfam PF04539 Sigma-70 region 3 505 580 3.9E-29 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Gene3D G3DSA:1.10.220.120 46 109 4.7E-31 T 13-10-2018 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 49 659 46.952 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 422 647 4.1E-38 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Gene3D G3DSA:1.10.601.10 158 495 4.6E-155 T 13-10-2018 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Pfam PF03979 Sigma-70 factor, region 1.1 49 126 1.6E-30 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Gene3D G3DSA:1.10.10.10 499 575 6.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03175 b9a8b43f30a230cc986396678e421de5 660 Pfam PF00140 Sigma-70 factor, region 1.2 143 173 1.9E-12 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_03175 b9a8b43f30a230cc986396678e421de5 660 SUPERFAMILY SSF88659 499 572 9.72E-21 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 SUPERFAMILY SSF46946 126 214 5.63E-17 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 ProSitePatterns PS01242 Zinc finger FPG-type signature. 238 262 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 SUPERFAMILY SSF81624 2 127 2.35E-25 T 13-10-2018 IPR035937 MutM-like, N-terminal CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 Pfam PF06827 Zinc finger found in FPG and IleRS 235 263 5.8E-9 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 Gene3D G3DSA:1.10.8.50 128 263 2.3E-41 T 13-10-2018 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 SMART SM00898 2 110 2.7E-13 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 SMART SM01232 126 221 1.9E-12 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 Hamap MF_01253 Endonuclease 8 [nei]. 1 263 61.951 T 13-10-2018 IPR023713 Endonuclease VIII GO:0003684|GO:0004519|GO:0006284|GO:0008270 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 104 1.7E-10 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 205 1.4E-10 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 SUPERFAMILY SSF57716 226 263 2.54E-11 T 13-10-2018 CS348_16680 2bd3aae9ade6f3e6a1bbe5f817c3fa13 263 Gene3D G3DSA:3.20.190.10 2 127 2.3E-29 T 13-10-2018 IPR035937 MutM-like, N-terminal CS348_03825 8945b1c0a934821200996007b37766b0 409 TIGRFAM TIGR03748 conj_PilL: integrating conjugative element protein PilL, PFGI-1 class 52 156 4.5E-43 T 13-10-2018 IPR022260 Integrating conjugative element protein PilL, PFGI-1 CS348_03825 8945b1c0a934821200996007b37766b0 409 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 320 404 9.1E-23 T 13-10-2018 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 SUPERFAMILY SSF50800 3 264 1.36E-17 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 SUPERFAMILY SSF54292 287 368 4.06E-21 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 Gene3D G3DSA:2.40.33.20 147 290 1.2E-5 T 13-10-2018 CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 Pfam PF03476 MOSC N-terminal beta barrel domain 2 116 7.6E-28 T 13-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 Gene3D G3DSA:3.10.20.30 291 369 9.3E-16 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 292 362 9.7E-14 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 Pfam PF03473 MOSC domain 139 262 3.0E-30 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 CS348_15195 60c288aeaec00ba3e4f9b94f2566db91 369 SUPERFAMILY SSF141673 4 132 3.66E-27 T 13-10-2018 CS348_07475 d289c5291250577e4535344a543e914a 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 6.7E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07475 d289c5291250577e4535344a543e914a 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 6.7E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07475 d289c5291250577e4535344a543e914a 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 6.7E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_07475 d289c5291250577e4535344a543e914a 294 SUPERFAMILY SSF46785 7 92 8.25E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_07475 d289c5291250577e4535344a543e914a 294 SUPERFAMILY SSF53850 94 292 3.26E-30 T 13-10-2018 CS348_07475 d289c5291250577e4535344a543e914a 294 Gene3D G3DSA:3.40.190.10 100 291 3.1E-44 T 13-10-2018 CS348_07475 d289c5291250577e4535344a543e914a 294 Gene3D G3DSA:1.10.10.10 2 91 4.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_07475 d289c5291250577e4535344a543e914a 294 Pfam PF03466 LysR substrate binding domain 93 292 8.2E-37 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_07475 d289c5291250577e4535344a543e914a 294 Gene3D G3DSA:3.40.190.10 170 271 3.1E-44 T 13-10-2018 CS348_07475 d289c5291250577e4535344a543e914a 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 1.8E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_14090 59155169bbd7cea5f3996e7e526510e4 544 Gene3D G3DSA:3.10.105.10 269 515 2.8E-172 T 13-10-2018 CS348_14090 59155169bbd7cea5f3996e7e526510e4 544 PIRSF PIRSF002741 11 532 9.8E-71 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_14090 59155169bbd7cea5f3996e7e526510e4 544 Gene3D G3DSA:3.40.190.10 60 527 2.8E-172 T 13-10-2018 CS348_14090 59155169bbd7cea5f3996e7e526510e4 544 SUPERFAMILY SSF53850 44 517 8.69E-93 T 13-10-2018 CS348_14090 59155169bbd7cea5f3996e7e526510e4 544 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 91 444 1.3E-77 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 133 150 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 SUPERFAMILY SSF53850 29 395 2.62E-96 T 13-10-2018 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 Gene3D G3DSA:3.40.190.10 48 357 7.5E-154 T 13-10-2018 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 Gene3D G3DSA:3.40.190.10 138 388 7.5E-154 T 13-10-2018 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 357 376 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 171 190 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 233 252 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 70 88 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 130 149 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 299 320 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 151 170 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 PRINTS PR00181 Maltose binding protein signature 36 54 8.1E-101 T 13-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 CS348_22550 7fedc616a401859cd3c3e6fbd54a3f9b 396 Pfam PF13416 Bacterial extracellular solute-binding protein 50 343 1.0E-41 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CS348_05300 099278c40dd2423046d6bab443935c23 244 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 21 242 3.0E-103 T 13-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 CS348_05300 099278c40dd2423046d6bab443935c23 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 8.5E-96 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CS348_05300 099278c40dd2423046d6bab443935c23 244 Gene3D G3DSA:3.40.50.620 2 216 5.4E-67 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_05300 099278c40dd2423046d6bab443935c23 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 219 4.0E-52 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CS348_05300 099278c40dd2423046d6bab443935c23 244 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 40.577 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CS348_05300 099278c40dd2423046d6bab443935c23 244 SUPERFAMILY SSF52402 21 208 5.93E-54 T 13-10-2018 CS348_05300 099278c40dd2423046d6bab443935c23 244 PIRSF PIRSF000857 4 244 2.3E-55 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 SMART SM00052 487 729 2.1E-85 T 13-10-2018 IPR001633 EAL domain CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 SUPERFAMILY SSF141868 493 727 3.27E-67 T 13-10-2018 IPR035919 EAL domain superfamily CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 Pfam PF00990 Diguanylate cyclase, GGDEF domain 326 447 4.3E-5 T 13-10-2018 IPR000160 GGDEF domain CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 Gene3D G3DSA:3.20.20.450 475 729 4.1E-71 T 13-10-2018 IPR035919 EAL domain superfamily CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 SMART SM00267 315 473 1.3E-16 T 13-10-2018 IPR000160 GGDEF domain CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 Gene3D G3DSA:3.30.70.270 313 466 7.9E-7 T 13-10-2018 CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 Pfam PF00563 EAL domain 493 724 1.2E-58 T 13-10-2018 IPR001633 EAL domain CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 SUPERFAMILY SSF55073 331 446 4.94E-6 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_07525 b6c3da1e9a66ee7c198d5c1c76b12250 729 Pfam PF05231 MASE1 15 315 2.1E-65 T 13-10-2018 IPR007895 MASE1 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 Gene3D G3DSA:1.10.287.950 45 243 5.2E-31 T 13-10-2018 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 107 234 9.5E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 Pfam PF13682 Chemoreceptor zinc-binding domain 245 308 8.5E-15 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 SMART SM00283 46 266 0.0029 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 SUPERFAMILY SSF58104 59 235 4.19E-34 T 13-10-2018 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 126 153 1.5E-12 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 155 184 1.5E-12 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03600 1c3050fde2def37f803ea97fa84e1f11 351 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 203 232 1.5E-12 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_22530 4b9b6b83405db98ae3a5f0075ca5d979 165 SUPERFAMILY SSF64288 6 165 8.98E-46 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_22530 4b9b6b83405db98ae3a5f0075ca5d979 165 Gene3D G3DSA:3.40.1410.10 2 165 1.7E-56 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_22530 4b9b6b83405db98ae3a5f0075ca5d979 165 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 165 25.886 T 13-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 CS348_22530 4b9b6b83405db98ae3a5f0075ca5d979 165 Pfam PF04345 Chorismate lyase 16 165 5.0E-31 T 13-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 CS348_09730 23dc547df2b2b375d7c0694020aaf1e1 265 Pfam PF06167 Glucose-regulated metallo-peptidase M90 22 243 7.2E-64 T 13-10-2018 IPR010384 MtfA family CS348_09730 23dc547df2b2b375d7c0694020aaf1e1 265 SUPERFAMILY SSF55486 34 245 1.25E-41 T 13-10-2018 CS348_09730 23dc547df2b2b375d7c0694020aaf1e1 265 Gene3D G3DSA:3.40.390.10 140 264 3.5E-43 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 CS348_09730 23dc547df2b2b375d7c0694020aaf1e1 265 Gene3D G3DSA:1.10.472.150 15 139 7.5E-44 T 13-10-2018 CS348_09730 23dc547df2b2b375d7c0694020aaf1e1 265 Hamap MF_01593 Protein MtfA [mtfA]. 1 265 62.957 T 13-10-2018 IPR010384 MtfA family CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 177 314 1.6E-35 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Pfam PF03454 MoeA C-terminal region (domain IV) 332 404 1.1E-20 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Gene3D G3DSA:3.40.980.10 26 328 3.7E-154 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Gene3D G3DSA:3.90.105.10 27 175 3.7E-154 T 13-10-2018 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Gene3D G3DSA:2.170.190.11 51 142 3.7E-154 T 13-10-2018 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 SUPERFAMILY SSF63867 328 407 4.32E-25 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 SUPERFAMILY SSF53218 178 321 4.06E-44 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Pfam PF00994 Probable molybdopterin binding domain 182 317 1.1E-28 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 SUPERFAMILY SSF63882 7 177 4.97E-58 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 254 287 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Gene3D G3DSA:2.40.340.10 329 399 3.7E-154 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 Pfam PF03453 MoeA N-terminal region (domain I and II) 9 168 1.5E-47 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16105 3b988506ab2fcb97f5c9802f0e18e548 411 SMART SM00852 181 318 2.3E-45 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_06525 a839aca46a956dfd311a87cc84c0fc13 433 Gene3D G3DSA:1.20.1250.20 21 433 8.3E-67 T 13-10-2018 CS348_06525 a839aca46a956dfd311a87cc84c0fc13 433 SUPERFAMILY SSF103473 20 431 4.32E-65 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_06525 a839aca46a956dfd311a87cc84c0fc13 433 Pfam PF00083 Sugar (and other) transporter 25 222 1.1E-25 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_06525 a839aca46a956dfd311a87cc84c0fc13 433 Pfam PF00083 Sugar (and other) transporter 230 424 1.7E-11 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_06525 a839aca46a956dfd311a87cc84c0fc13 433 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 31 418 2.6E-144 T 13-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 CS348_06525 a839aca46a956dfd311a87cc84c0fc13 433 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 SUPERFAMILY SSF56796 3 380 5.63E-127 T 13-10-2018 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 Gene3D G3DSA:3.40.50.1970 1 183 2.0E-53 T 13-10-2018 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 Gene3D G3DSA:1.20.1090.10 184 382 7.2E-74 T 13-10-2018 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 378 1.0E-183 T 13-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 CS348_23565 19d39fec3d5181e1f52cd71fbf1e6c16 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 374 2.9E-122 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_01855 046800922f51550dcdd78808fab7ca1a 134 SUPERFAMILY SSF82784 1 131 2.75E-44 T 13-10-2018 IPR036102 OsmC/Ohr superfamily CS348_01855 046800922f51550dcdd78808fab7ca1a 134 Gene3D G3DSA:3.30.300.20 35 134 1.1E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_01855 046800922f51550dcdd78808fab7ca1a 134 Gene3D G3DSA:2.20.25.10 1 34 7.4E-22 T 13-10-2018 CS348_01855 046800922f51550dcdd78808fab7ca1a 134 Pfam PF02566 OsmC-like protein 30 127 3.1E-20 T 13-10-2018 IPR003718 OsmC/Ohr family CS348_03585 a2d1bf62dfc132d710c39062d8532bf1 236 Pfam PF13531 Bacterial extracellular solute-binding protein 2 225 4.9E-30 T 13-10-2018 CS348_03585 a2d1bf62dfc132d710c39062d8532bf1 236 Gene3D G3DSA:3.40.190.10 3 225 1.6E-26 T 13-10-2018 CS348_03585 a2d1bf62dfc132d710c39062d8532bf1 236 SUPERFAMILY SSF53850 2 225 2.58E-30 T 13-10-2018 CS348_03585 a2d1bf62dfc132d710c39062d8532bf1 236 Gene3D G3DSA:3.40.190.10 73 193 1.6E-26 T 13-10-2018 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 SUPERFAMILY SSF48168 13 174 2.75E-66 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 SUPERFAMILY SSF51998 175 698 1.34E-185 T 13-10-2018 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 15 714 0.0 T 13-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 493 516 1.8E-33 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 382 393 1.8E-33 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 426 449 1.8E-33 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 465 487 1.8E-33 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 577 604 1.8E-33 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 251 270 1.8E-33 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 99 171 1.3E-12 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 Pfam PF02867 Ribonucleotide reductase, barrel domain 176 693 2.6E-139 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 Pfam PF08343 Ribonucleotide reductase N-terminal 16 97 4.4E-27 T 13-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 Gene3D G3DSA:1.10.1650.20 294 345 8.4E-29 T 13-10-2018 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 566 588 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_06020 1a7056763574ea274fd13021ba4e6a53 714 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 103 696 3.0E-157 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 Pfam PF00248 Aldo/keto reductase family 18 273 2.8E-54 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 Gene3D G3DSA:3.20.20.100 4 285 1.8E-105 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 PRINTS PR00069 Aldo-keto reductase signature 207 231 1.6E-21 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 PRINTS PR00069 Aldo-keto reductase signature 98 116 1.6E-21 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 PRINTS PR00069 Aldo-keto reductase signature 42 66 1.6E-21 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 PRINTS PR00069 Aldo-keto reductase signature 128 145 1.6E-21 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 SUPERFAMILY SSF51430 10 274 3.93E-80 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 PIRSF PIRSF000097 116 281 2.3E-24 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_13905 21896bc4eaba83677a55abf5dc226c40 285 PIRSF PIRSF000097 1 123 1.7E-18 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_15870 6a1817784e781f510584c236252e8a2d 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 88 1.1E-12 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_15870 6a1817784e781f510584c236252e8a2d 238 Gene3D G3DSA:1.10.3720.10 6 232 2.9E-48 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15870 6a1817784e781f510584c236252e8a2d 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 230 2.7E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_15870 6a1817784e781f510584c236252e8a2d 238 SUPERFAMILY SSF161098 8 216 7.72E-38 T 13-10-2018 IPR035906 MetI-like superfamily CS348_00920 0758122686cfff0a228b15d07f521be3 117 Pfam PF05360 yiaA/B two helix domain 13 58 1.3E-11 T 13-10-2018 IPR008024 YiaAB two helix CS348_00920 0758122686cfff0a228b15d07f521be3 117 Pfam PF05360 yiaA/B two helix domain 67 116 1.6E-7 T 13-10-2018 IPR008024 YiaAB two helix CS348_07170 395ef615268f86681fc490657a371525 118 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 114 1.0E-34 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR CS348_07170 395ef615268f86681fc490657a371525 118 SUPERFAMILY SSF52833 1 115 3.13E-33 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_07170 395ef615268f86681fc490657a371525 118 Gene3D G3DSA:3.40.30.10 1 115 7.8E-40 T 13-10-2018 CS348_07170 395ef615268f86681fc490657a371525 118 Pfam PF03960 ArsC family 5 114 3.3E-16 T 13-10-2018 IPR006660 Arsenate reductase-like CS348_19070 87a20081a8f0a9fe04a230f085bda317 271 Gene3D G3DSA:3.40.190.10 34 265 2.4E-104 T 13-10-2018 CS348_19070 87a20081a8f0a9fe04a230f085bda317 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 2.8E-151 T 13-10-2018 IPR004872 Lipoprotein NlpA family CS348_19070 87a20081a8f0a9fe04a230f085bda317 271 Pfam PF03180 NLPA lipoprotein 33 271 2.0E-102 T 13-10-2018 IPR004872 Lipoprotein NlpA family CS348_19070 87a20081a8f0a9fe04a230f085bda317 271 SUPERFAMILY SSF53850 33 271 4.46E-86 T 13-10-2018 CS348_19070 87a20081a8f0a9fe04a230f085bda317 271 Gene3D G3DSA:3.40.190.10 115 221 2.4E-104 T 13-10-2018 CS348_19070 87a20081a8f0a9fe04a230f085bda317 271 PIRSF PIRSF002854 1 271 1.8E-109 T 13-10-2018 IPR004872 Lipoprotein NlpA family CS348_07255 e361e17c20f85828779ef67b9d306a2a 96 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 20 39 - T 13-10-2018 IPR020808 Bacterial microcompartments protein, conserved site CS348_07255 e361e17c20f85828779ef67b9d306a2a 96 Pfam PF00936 BMC domain 3 78 7.8E-28 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07255 e361e17c20f85828779ef67b9d306a2a 96 SMART SM00877 2 78 9.9E-36 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07255 e361e17c20f85828779ef67b9d306a2a 96 SUPERFAMILY SSF143414 1 89 1.83E-31 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_07255 e361e17c20f85828779ef67b9d306a2a 96 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 2 48 6.0E-19 T 13-10-2018 CS348_07255 e361e17c20f85828779ef67b9d306a2a 96 Gene3D G3DSA:3.30.70.1710 1 95 1.8E-39 T 13-10-2018 CS348_09840 7e7a55f14b0a63323e8f6c06c13197e6 89 PIRSF PIRSF004669 1 89 1.5E-33 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_09840 7e7a55f14b0a63323e8f6c06c13197e6 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 6.6E-35 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 CS348_09840 7e7a55f14b0a63323e8f6c06c13197e6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 8.3E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_09840 7e7a55f14b0a63323e8f6c06c13197e6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 8.3E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_09840 7e7a55f14b0a63323e8f6c06c13197e6 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 8.3E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_09840 7e7a55f14b0a63323e8f6c06c13197e6 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 4.2E-30 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_19090 4109d54b305e8726aeb9d80f295bc25d 233 Gene3D G3DSA:2.40.50.540 145 233 2.8E-35 T 13-10-2018 IPR038139 NlpE, C-terminal domain superfamily CS348_19090 4109d54b305e8726aeb9d80f295bc25d 233 Pfam PF04170 NlpE N-terminal domain 45 129 1.5E-25 T 13-10-2018 IPR007298 Copper resistance lipoprotein NlpE CS348_19090 4109d54b305e8726aeb9d80f295bc25d 233 Gene3D G3DSA:2.40.128.300 21 118 1.7E-36 T 13-10-2018 CS348_19090 4109d54b305e8726aeb9d80f295bc25d 233 Pfam PF17185 NlpE C-terminal OB domain 143 231 2.6E-32 T 13-10-2018 IPR033450 NlpE, C-terminal OB domain CS348_00360 dc514d8fd164d6be3c436181eed5ba82 369 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 5 363 3.2E-165 T 13-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 CS348_00360 dc514d8fd164d6be3c436181eed5ba82 369 SUPERFAMILY SSF53383 12 365 3.23E-31 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_00360 dc514d8fd164d6be3c436181eed5ba82 369 Gene3D G3DSA:3.40.640.10 24 280 3.0E-52 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_00360 dc514d8fd164d6be3c436181eed5ba82 369 Pfam PF03841 L-seryl-tRNA selenium transferase 14 291 1.0E-18 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 Gene3D G3DSA:3.30.450.20 114 230 5.1E-16 T 13-10-2018 CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 111 230 1.3E-15 T 13-10-2018 IPR000014 PAS domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 SUPERFAMILY SSF55785 121 231 1.18E-15 T 13-10-2018 IPR035965 PAS domain superfamily CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 Pfam PF13426 PAS domain 120 222 2.7E-9 T 13-10-2018 IPR000014 PAS domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 SMART SM00052 402 646 2.4E-114 T 13-10-2018 IPR001633 EAL domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 SUPERFAMILY SSF141868 409 656 6.54E-81 T 13-10-2018 IPR035919 EAL domain superfamily CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 SMART SM00267 223 392 8.4E-69 T 13-10-2018 IPR000160 GGDEF domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 232 391 1.7E-35 T 13-10-2018 IPR000160 GGDEF domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 SUPERFAMILY SSF55073 240 394 3.06E-45 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 SMART SM00091 108 174 1.9E-5 T 13-10-2018 IPR000014 PAS domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 Gene3D G3DSA:3.20.20.450 406 655 6.9E-86 T 13-10-2018 IPR035919 EAL domain superfamily CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 Gene3D G3DSA:3.30.70.270 231 405 6.7E-57 T 13-10-2018 CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 Pfam PF00563 EAL domain 409 641 1.7E-63 T 13-10-2018 IPR001633 EAL domain CS348_11375 753bda16cb7c9dacd47113e957e65f32 660 Pfam PF00990 Diguanylate cyclase, GGDEF domain 234 387 6.5E-47 T 13-10-2018 IPR000160 GGDEF domain CS348_10520 58c7d063274a4e71aac6c2ee92def3e0 139 Gene3D G3DSA:3.40.630.30 35 137 1.3E-20 T 13-10-2018 CS348_10520 58c7d063274a4e71aac6c2ee92def3e0 139 Pfam PF00583 Acetyltransferase (GNAT) family 27 115 1.4E-10 T 13-10-2018 IPR000182 GNAT domain CS348_10520 58c7d063274a4e71aac6c2ee92def3e0 139 SUPERFAMILY SSF55729 8 125 2.7E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_12705 0a0e50c85449fef99585c073e20e31db 309 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 1 309 62.656 T 13-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 CS348_12705 0a0e50c85449fef99585c073e20e31db 309 Gene3D G3DSA:3.50.14.10 13 281 9.9E-127 T 13-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 CS348_12705 0a0e50c85449fef99585c073e20e31db 309 SUPERFAMILY SSF56596 5 308 5.89E-128 T 13-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 CS348_12705 0a0e50c85449fef99585c073e20e31db 309 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 9 306 2.7E-137 T 13-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 CS348_12705 0a0e50c85449fef99585c073e20e31db 309 Gene3D G3DSA:3.30.54.10 174 306 9.9E-127 T 13-10-2018 CS348_12705 0a0e50c85449fef99585c073e20e31db 309 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 308 4.1E-154 T 13-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 Pfam PF00072 Response regulator receiver domain 6 117 1.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 SUPERFAMILY SSF46894 143 211 2.79E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 Gene3D G3DSA:3.40.50.12740 5 210 1.7E-53 T 13-10-2018 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 SUPERFAMILY SSF52172 3 130 6.83E-29 T 13-10-2018 IPR011006 CheY-like superfamily CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 1.9E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 SMART SM00421 147 204 3.6E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13125 9ea9ee7295ffbad2b17fcb91e6611ee6 212 SMART SM00448 4 117 2.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_25090 dd3c26e8ff7592e3800e867252df246a 384 SUPERFAMILY SSF143100 301 363 5.62E-5 T 13-10-2018 IPR035069 TTHA1013/TTHA0281-like CS348_25090 dd3c26e8ff7592e3800e867252df246a 384 Gene3D G3DSA:1.10.150.130 8 118 2.2E-5 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_25090 dd3c26e8ff7592e3800e867252df246a 384 Gene3D G3DSA:1.10.443.10 121 288 3.4E-31 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_25090 dd3c26e8ff7592e3800e867252df246a 384 Pfam PF00589 Phage integrase family 123 276 8.5E-22 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_25090 dd3c26e8ff7592e3800e867252df246a 384 SUPERFAMILY SSF56349 11 280 7.65E-53 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_04745 65b4d015f02670d4fea9bdab853f24fc 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 1.4E-25 T 13-10-2018 IPR005631 Flavinator of succinate dehydrogenase CS348_04745 65b4d015f02670d4fea9bdab853f24fc 88 SUPERFAMILY SSF109910 1 78 4.45E-27 T 13-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily CS348_04745 65b4d015f02670d4fea9bdab853f24fc 88 Gene3D G3DSA:1.10.150.250 1 88 2.4E-40 T 13-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily CS348_05745 336efccad0d1d8e0d9d7112d9ef1c5c4 373 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 371 5.1E-176 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 CS348_05745 336efccad0d1d8e0d9d7112d9ef1c5c4 373 Gene3D G3DSA:3.40.50.11740 66 304 1.4E-114 T 13-10-2018 CS348_05745 336efccad0d1d8e0d9d7112d9ef1c5c4 373 Gene3D G3DSA:1.10.10.2140 318 369 1.4E-23 T 13-10-2018 CS348_05745 336efccad0d1d8e0d9d7112d9ef1c5c4 373 Gene3D G3DSA:3.40.50.11750 30 263 1.4E-114 T 13-10-2018 CS348_05745 336efccad0d1d8e0d9d7112d9ef1c5c4 373 PIRSF PIRSF005622 1 372 2.8E-159 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 CS348_05745 336efccad0d1d8e0d9d7112d9ef1c5c4 373 Pfam PF01924 Hydrogenase formation hypA family 15 367 1.3E-151 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 CS348_02535 83c024b93c1097e60cb146ea3303cd91 496 Gene3D G3DSA:1.20.1250.20 272 453 2.5E-20 T 13-10-2018 CS348_02535 83c024b93c1097e60cb146ea3303cd91 496 SUPERFAMILY SSF103473 8 452 9.42E-65 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_02535 83c024b93c1097e60cb146ea3303cd91 496 TIGRFAM TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family 9 442 6.3E-191 T 13-10-2018 IPR004742 Sialic acid transporter GO:0015136|GO:0015739|GO:0016021 CS348_02535 83c024b93c1097e60cb146ea3303cd91 496 Hamap MF_01238 Sialic acid transporter NanT [nanT]. 2 493 49.573 T 13-10-2018 IPR004742 Sialic acid transporter GO:0015136|GO:0015739|GO:0016021 CS348_02535 83c024b93c1097e60cb146ea3303cd91 496 Pfam PF07690 Major Facilitator Superfamily 26 289 1.5E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_02535 83c024b93c1097e60cb146ea3303cd91 496 Gene3D G3DSA:1.20.1250.20 15 222 3.0E-40 T 13-10-2018 CS348_24295 e4771cd8726621771f0a79a1f9a5f547 309 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 CS348_24295 e4771cd8726621771f0a79a1f9a5f547 309 Gene3D G3DSA:3.30.470.10 10 127 1.1E-114 T 13-10-2018 CS348_24295 e4771cd8726621771f0a79a1f9a5f547 309 SUPERFAMILY SSF56752 7 307 7.98E-106 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 CS348_24295 e4771cd8726621771f0a79a1f9a5f547 309 Gene3D G3DSA:3.20.10.10 138 289 1.1E-114 T 13-10-2018 CS348_24295 e4771cd8726621771f0a79a1f9a5f547 309 Pfam PF01063 Amino-transferase class IV 36 268 2.8E-51 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 CS348_24295 e4771cd8726621771f0a79a1f9a5f547 309 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 2.1E-146 T 13-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 Gene3D G3DSA:3.90.650.10 146 323 1.3E-57 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 SUPERFAMILY SSF55326 4 137 1.64E-33 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 Pfam PF02769 AIR synthase related protein, C-terminal domain 150 296 3.1E-8 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 Gene3D G3DSA:3.30.1330.10 2 144 1.5E-43 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 PIRSF PIRSF005303 1 322 2.0E-86 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 322 28.807 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 137 7.1E-21 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 SUPERFAMILY SSF56042 143 308 2.84E-40 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_18270 7e043fa6c7d624cabb7766a4847fafc6 325 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 2.7E-116 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 CS348_15720 b951b3d35d972e2220757088d322fbc6 208 SUPERFAMILY SSF53955 22 207 6.75E-43 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_15720 b951b3d35d972e2220757088d322fbc6 208 Pfam PF00182 Chitinase class I 115 184 1.3E-8 T 13-10-2018 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6855|MetaCyc: PWY-6902|MetaCyc: PWY-7822 CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 SUPERFAMILY SSF52821 165 278 2.1E-32 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 Pfam PF00581 Rhodanese-like domain 165 270 1.3E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 Pfam PF00581 Rhodanese-like domain 9 128 2.3E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 Gene3D G3DSA:3.40.250.10 150 279 2.8E-41 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 SUPERFAMILY SSF52821 3 151 5.5E-39 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 Gene3D G3DSA:3.40.250.10 3 149 4.4E-47 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 SMART SM00450 7 132 1.6E-24 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 SMART SM00450 155 275 3.4E-23 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 ProSitePatterns PS00380 Rhodanese signature 1. 42 53 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 CS348_06890 4fa6fdbc4d9c4cd893cbf0227fa21882 280 ProSitePatterns PS00683 Rhodanese C-terminal signature. 259 269 - T 13-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 SUPERFAMILY SSF74650 23 393 5.34E-167 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 23 507 1.8E-200 T 13-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 Gene3D G3DSA:2.70.98.10 22 397 3.4E-174 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 6 509 63.562 T 13-10-2018 IPR023704 Glucan biosynthesis protein G CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 PIRSF PIRSF006281 1 511 5.3E-242 T 13-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 SUPERFAMILY SSF81296 397 510 4.06E-34 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_14710 0added7acf6e102975fd96d80e7fb7d4 511 Gene3D G3DSA:2.60.40.10 398 511 3.8E-53 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20885 7f23ef3d5885c45e62803f425e510107 262 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 241 261 2.4E-7 T 13-10-2018 IPR024726 Ferric iron reductase, C-terminal GO:0051537 CS348_20885 7f23ef3d5885c45e62803f425e510107 262 TIGRFAM TIGR03951 Fe_III_red_FhuF: siderophore-iron reductase FhuF 87 262 1.7E-66 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 125 139 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 93 108 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 56 73 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 197 212 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 16 32 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 241 259 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 173 189 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 PRINTS PR01714 Ferric iron reductase signature 215 231 2.3E-76 T 13-10-2018 IPR008090 Ferric iron reductase CS348_20885 7f23ef3d5885c45e62803f425e510107 262 Pfam PF06276 Ferric iron reductase FhuF-like transporter 93 237 4.0E-32 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 6.2E-119 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.707 T 13-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 Gene3D G3DSA:1.10.240.10 186 298 1.6E-141 T 13-10-2018 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 4.4E-90 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 3.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 3.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 3.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 3.1E-30 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 SUPERFAMILY SSF52374 5 330 1.89E-98 T 13-10-2018 CS348_01780 79ed80b6f7652198960fd5cb26f0fe05 334 Gene3D G3DSA:3.40.50.620 6 329 1.6E-141 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 SUPERFAMILY SSF53218 8 168 1.83E-46 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 SMART SM00852 14 158 7.9E-30 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 Pfam PF00994 Probable molybdopterin binding domain 14 156 6.6E-33 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 Gene3D G3DSA:3.40.980.10 1 170 4.5E-55 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 153 4.6E-39 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 PIRSF PIRSF006443 1 166 3.5E-62 T 13-10-2018 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 CS348_16315 90d78ad20ef8583a1d0e6b0a82eb3c32 170 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 169 5.6E-82 T 13-10-2018 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 Pfam PF01750 Hydrogenase maturation protease 23 152 4.5E-37 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 7 153 5.4E-42 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 Gene3D G3DSA:3.40.50.1450 4 165 1.9E-38 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 SUPERFAMILY SSF53163 5 160 2.17E-42 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 PRINTS PR00446 Hydrogen uptake protein signature 18 29 5.2E-29 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 PRINTS PR00446 Hydrogen uptake protein signature 38 55 5.2E-29 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 PRINTS PR00446 Hydrogen uptake protein signature 59 69 5.2E-29 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 PRINTS PR00446 Hydrogen uptake protein signature 70 86 5.2E-29 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 PRINTS PR00446 Hydrogen uptake protein signature 6 18 5.2E-29 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_10875 0e7d0aa80d56da06ab1339b2be53a555 198 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 6 157 3.6E-58 T 13-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 CS348_22805 fef12a209ff19260ecd2ab7153ebd00d 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 247 4.7E-108 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CS348_22805 fef12a209ff19260ecd2ab7153ebd00d 256 SUPERFAMILY SSF110399 1 233 4.84E-80 T 13-10-2018 CS348_22805 fef12a209ff19260ecd2ab7153ebd00d 256 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 42.386 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CS348_22805 fef12a209ff19260ecd2ab7153ebd00d 256 Gene3D G3DSA:3.20.20.70 1 253 4.6E-108 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 181 314 8.6E-48 T 13-10-2018 IPR012660 Thioesterase, putative CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 Gene3D G3DSA:3.40.630.30 16 161 2.9E-26 T 13-10-2018 CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 SUPERFAMILY SSF55729 15 162 1.89E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 Gene3D G3DSA:3.10.129.10 164 315 1.8E-43 T 13-10-2018 CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 Pfam PF00583 Acetyltransferase (GNAT) family 45 138 1.9E-13 T 13-10-2018 IPR000182 GNAT domain CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 174 313 1.0E-48 T 13-10-2018 IPR012660 Thioesterase, putative CS348_23650 6917d8829fef707c94abcc7a2ec4b921 329 SUPERFAMILY SSF54637 171 313 1.62E-38 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 Gene3D G3DSA:3.90.780.10 338 522 1.5E-52 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 SUPERFAMILY SSF56300 28 336 2.71E-70 T 13-10-2018 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 Pfam PF02872 5'-nucleotidase, C-terminal domain 340 483 2.5E-36 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 ProSitePatterns PS00786 5'-nucleotidase signature 2. 110 121 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 Gene3D G3DSA:3.60.21.10 27 337 3.1E-94 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 SUPERFAMILY SSF55816 336 517 3.53E-47 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 PRINTS PR01607 Apyrase family signature 459 478 1.0E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 PRINTS PR01607 Apyrase family signature 30 48 1.0E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 PRINTS PR01607 Apyrase family signature 245 268 1.0E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 PRINTS PR01607 Apyrase family signature 389 412 1.0E-17 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_20195 85e9ef4d3578907d9836b195c84a58b8 523 Pfam PF00149 Calcineurin-like phosphoesterase 33 262 5.5E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 6 319 2.2E-134 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PIRSF PIRSF001415 1 323 3.1E-147 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 SMART SM01004 3 321 2.3E-206 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 SUPERFAMILY SSF51569 4 319 2.49E-128 T 13-10-2018 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 240 252 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 Gene3D G3DSA:3.20.20.70 2 324 9.1E-144 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 265 280 4.5E-54 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 121 135 4.5E-54 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 295 314 4.5E-54 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 151 170 4.5E-54 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 189 208 4.5E-54 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_18515 fc8c89819c80d6a2e590b297f262c76c 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 240 256 4.5E-54 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CS348_22775 f96ced5f376884ee1f582716978ea346 257 SUPERFAMILY SSF55811 79 241 5.04E-41 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_22775 f96ced5f376884ee1f582716978ea346 257 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 257 47.398 T 13-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 CS348_22775 f96ced5f376884ee1f582716978ea346 257 SUPERFAMILY SSF55811 4 96 5.0E-29 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_22775 f96ced5f376884ee1f582716978ea346 257 Pfam PF00293 NUDIX domain 132 234 2.6E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_22775 f96ced5f376884ee1f582716978ea346 257 Gene3D G3DSA:3.90.79.10 126 257 1.1E-41 T 13-10-2018 CS348_22775 f96ced5f376884ee1f582716978ea346 257 Gene3D G3DSA:3.90.79.20 1 125 5.5E-54 T 13-10-2018 CS348_22775 f96ced5f376884ee1f582716978ea346 257 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_22775 f96ced5f376884ee1f582716978ea346 257 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 2.0E-12 T 13-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 210 251 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 SUPERFAMILY SSF46689 211 255 1.12E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 SUPERFAMILY SSF51182 16 182 9.19E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 Pfam PF12833 Helix-turn-helix domain 179 255 2.5E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 SMART SM00342 172 255 2.7E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 Gene3D G3DSA:1.10.10.60 157 258 1.5E-16 T 13-10-2018 CS348_13950 c6526fc983af1677ea3c45abee08fe74 264 Pfam PF02311 AraC-like ligand binding domain 21 91 6.6E-6 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_01690 afb351c92c7db796dbe30ab85cd5fb8e 133 SUPERFAMILY SSF55174 7 104 1.57E-31 T 13-10-2018 CS348_01690 afb351c92c7db796dbe30ab85cd5fb8e 133 Pfam PF01479 S4 domain 9 53 2.9E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_01690 afb351c92c7db796dbe30ab85cd5fb8e 133 PIRSF PIRSF016821 6 133 5.1E-41 T 13-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 CS348_01690 afb351c92c7db796dbe30ab85cd5fb8e 133 SMART SM00363 9 72 1.2E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_01690 afb351c92c7db796dbe30ab85cd5fb8e 133 Gene3D G3DSA:3.10.290.10 1 108 1.8E-40 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Gene3D G3DSA:1.10.4050.10 1 110 1.8E-52 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Pfam PF08335 GlnD PII-uridylyltransferase 297 436 1.2E-45 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Pfam PF08335 GlnD PII-uridylyltransferase 826 917 1.4E-12 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Gene3D G3DSA:1.20.120.330 285 440 4.0E-59 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 554 805 5.7E-102 T 13-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 31 273 2.8E-92 T 13-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 SUPERFAMILY SSF81593 287 436 1.88E-45 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 SUPERFAMILY SSF81301 12 286 1.96E-87 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Gene3D G3DSA:1.20.120.1510 450 562 1.9E-38 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 SUPERFAMILY SSF81301 526 813 2.78E-89 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Gene3D G3DSA:1.20.120.330 813 947 1.5E-50 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Gene3D G3DSA:3.30.460.100 563 812 1.0E-101 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 27 946 19.923 T 13-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 Gene3D G3DSA:3.30.460.10 111 284 1.9E-67 T 13-10-2018 CS348_03230 ce3543ed44672fb007a5e83e76546437 947 SUPERFAMILY SSF81593 816 944 4.55E-33 T 13-10-2018 CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 2.9E-101 T 13-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 Gene3D G3DSA:3.40.1190.20 2 310 3.8E-91 T 13-10-2018 IPR029056 Ribokinase-like CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 PIRSF PIRSF000535 2 311 6.2E-118 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 6.5E-99 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 SUPERFAMILY SSF53613 7 290 8.42E-70 T 13-10-2018 IPR029056 Ribokinase-like CS348_08600 1c792e9b536a0f7b97841e3188af7aa3 312 Pfam PF00294 pfkB family carbohydrate kinase 14 293 3.7E-68 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 Gene3D G3DSA:3.90.700.10 237 363 1.1E-164 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 Pfam PF00890 FAD binding domain 7 397 6.3E-114 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 SUPERFAMILY SSF46977 444 584 1.13E-45 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 Gene3D G3DSA:1.20.58.100 423 542 1.2E-35 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.6E-9 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 1.6E-9 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 SUPERFAMILY SSF51905 3 416 7.47E-71 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 Gene3D G3DSA:4.10.80.40 543 577 5.6E-24 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 SUPERFAMILY SSF56425 227 358 2.09E-42 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 13-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.4E-5 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 1.4E-5 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 PIRSF PIRSF000171 1 574 1.3E-41 T 13-10-2018 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 1.2E-38 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 Gene3D G3DSA:3.50.50.60 7 409 1.1E-164 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_21900 33a37273535b0cf7c60925bdca4e8239 596 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 1.0E-248 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_18900 fa58d6395504f6b8f536ec377b690d4a 209 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 13 206 2.4E-48 T 13-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 CS348_18900 fa58d6395504f6b8f536ec377b690d4a 209 PIRSF PIRSF012337 1 208 9.8E-63 T 13-10-2018 IPR014462 Phage-associated protein Gp45 CS348_18900 fa58d6395504f6b8f536ec377b690d4a 209 Gene3D G3DSA:2.20.25.540 88 141 2.9E-27 T 13-10-2018 CS348_18900 fa58d6395504f6b8f536ec377b690d4a 209 Pfam PF06890 Bacteriophage Mu Gp45 protein 22 194 1.0E-41 T 13-10-2018 IPR014462 Phage-associated protein Gp45 CS348_06780 1b6fbd3f6a5f9e4b1a30ed59584702de 379 PIRSF PIRSF004925 1 379 1.0E-117 T 13-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter CS348_06780 1b6fbd3f6a5f9e4b1a30ed59584702de 379 Pfam PF12832 MFS_1 like family 8 359 1.1E-46 T 13-10-2018 IPR024989 Major facilitator superfamily associated domain CS348_06780 1b6fbd3f6a5f9e4b1a30ed59584702de 379 SUPERFAMILY SSF103473 7 371 7.06E-38 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_06780 1b6fbd3f6a5f9e4b1a30ed59584702de 379 Gene3D G3DSA:1.20.1250.20 201 376 2.6E-35 T 13-10-2018 CS348_06780 1b6fbd3f6a5f9e4b1a30ed59584702de 379 Gene3D G3DSA:1.20.1250.20 4 191 1.4E-22 T 13-10-2018 CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 3.7E-22 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 SUPERFAMILY SSF55594 287 375 3.4E-24 T 13-10-2018 IPR035895 HPr-like superfamily CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 Gene3D G3DSA:3.30.1340.10 286 372 4.2E-27 T 13-10-2018 IPR035895 HPr-like superfamily CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 13-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 Pfam PF00381 PTS HPr component phosphorylation site 287 368 3.4E-25 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 139 6.1E-29 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 SUPERFAMILY SSF55804 2 140 7.98E-39 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 PRINTS PR00107 Phosphocarrier protein signature 297 313 2.8E-18 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 PRINTS PR00107 Phosphocarrier protein signature 340 357 2.8E-18 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 PRINTS PR00107 Phosphocarrier protein signature 325 340 2.8E-18 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 SUPERFAMILY SSF55804 150 276 9.07E-11 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_08595 78f887fcd54321b11b38e6f7a41c51ad 376 Gene3D G3DSA:3.40.930.10 1 143 5.9E-40 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PRINTS PR01466 Bacterial arginine deiminase signature 177 192 1.2E-43 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 1.2E-43 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PRINTS PR01466 Bacterial arginine deiminase signature 385 403 1.2E-43 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PRINTS PR01466 Bacterial arginine deiminase signature 342 359 1.2E-43 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PRINTS PR01466 Bacterial arginine deiminase signature 149 167 1.2E-43 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PRINTS PR01466 Bacterial arginine deiminase signature 362 376 1.2E-43 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 Pfam PF02274 Amidinotransferase 18 403 3.3E-106 T 13-10-2018 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 Gene3D G3DSA:3.75.10.10 6 403 9.0E-151 T 13-10-2018 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 Hamap MF_00242 Arginine deiminase [arcA]. 1 406 43.972 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 SUPERFAMILY SSF55909 4 406 1.77E-131 T 13-10-2018 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 PIRSF PIRSF006356 1 406 1.5E-147 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 TIGRFAM TIGR01078 arcA: arginine deiminase 6 406 9.2E-159 T 13-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 CS348_21270 3b04e0fc3d6d8e78f3c5d04bebd83efb 406 Gene3D G3DSA:1.10.3930.10 68 148 9.0E-151 T 13-10-2018 CS348_00655 6cd7d0df5129525833a84114a02ceafb 317 Gene3D G3DSA:3.40.50.2000 164 317 3.4E-56 T 13-10-2018 CS348_00655 6cd7d0df5129525833a84114a02ceafb 317 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 75 317 8.0E-85 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 CS348_00655 6cd7d0df5129525833a84114a02ceafb 317 SUPERFAMILY SSF53756 1 316 1.57E-72 T 13-10-2018 CS348_00655 6cd7d0df5129525833a84114a02ceafb 317 Gene3D G3DSA:3.40.50.2000 1 163 3.2E-67 T 13-10-2018 CS348_00655 6cd7d0df5129525833a84114a02ceafb 317 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 301 2.2E-128 T 13-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 CS348_14170 870ee631c1263d6dd5814ba1b0fe1738 79 SUPERFAMILY SSF54857 1 78 4.32E-25 T 13-10-2018 IPR036687 DinI-like superfamily CS348_14170 870ee631c1263d6dd5814ba1b0fe1738 79 Gene3D G3DSA:3.30.910.10 1 79 1.0E-18 T 13-10-2018 IPR036687 DinI-like superfamily CS348_14170 870ee631c1263d6dd5814ba1b0fe1738 79 Pfam PF06183 DinI-like family 17 76 1.6E-23 T 13-10-2018 IPR010391 DNA damage-inducible protein DinI-like CS348_16595 eb9652240532d6e321d287a42f0330ed 134 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 5.5E-49 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CS348_16595 eb9652240532d6e321d287a42f0330ed 134 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 11 28 - T 13-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 CS348_16595 eb9652240532d6e321d287a42f0330ed 134 PIRSF PIRSF003230 1 134 1.9E-48 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CS348_16595 eb9652240532d6e321d287a42f0330ed 134 Pfam PF03061 Thioesterase superfamily 20 103 1.9E-17 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CS348_16595 eb9652240532d6e321d287a42f0330ed 134 SUPERFAMILY SSF54637 2 133 2.35E-39 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_16595 eb9652240532d6e321d287a42f0330ed 134 Gene3D G3DSA:3.10.129.10 1 134 2.1E-41 T 13-10-2018 CS348_16595 eb9652240532d6e321d287a42f0330ed 134 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 6.8E-51 T 13-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 CS348_19605 a03c7e73f679cc20a475e00ec73701cc 145 SUPERFAMILY SSF54523 7 113 3.56E-22 T 13-10-2018 CS348_19605 a03c7e73f679cc20a475e00ec73701cc 145 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 25 9.5E-10 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_19605 a03c7e73f679cc20a475e00ec73701cc 145 Pfam PF00114 Pilin (bacterial filament) 36 125 2.4E-4 T 13-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 CS348_19605 a03c7e73f679cc20a475e00ec73701cc 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.8E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_19605 a03c7e73f679cc20a475e00ec73701cc 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_19605 a03c7e73f679cc20a475e00ec73701cc 145 Gene3D G3DSA:3.30.700.10 7 141 3.2E-26 T 13-10-2018 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 5.8E-140 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 Gene3D G3DSA:3.10.20.70 2 104 7.6E-42 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 6.9E-32 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 SUPERFAMILY SSF55931 102 468 3.53E-139 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 7.9E-220 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 SMART SM01230 102 379 1.1E-151 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 SUPERFAMILY SSF54368 3 99 3.01E-36 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 Gene3D G3DSA:3.30.590.10 105 457 4.8E-155 T 13-10-2018 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CS348_23760 47721f39b9d86eb2e0b69028f424a2e6 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 13-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 SUPERFAMILY SSF50891 26 189 1.31E-58 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 59 1.7E-10 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 1.7E-10 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 144 159 1.7E-10 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 65 82 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 Gene3D G3DSA:2.40.100.10 25 190 1.4E-73 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_01820 2ba6240ba1652aedbb542d780c8c54a2 190 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 188 4.8E-50 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 203 1.3E-49 T 13-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 Gene3D G3DSA:1.10.357.10 1 217 9.7E-101 T 13-10-2018 CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 SUPERFAMILY SSF46689 1 68 4.09E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 SUPERFAMILY SSF48498 84 200 2.92E-12 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.7E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 7.7E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_17980 1ef0776b4593b6d18dc1d443145cca97 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 2.4E-20 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_15325 aa31d919566c752ab28d8a8a61ab84aa 227 Gene3D G3DSA:3.40.50.300 1 227 1.7E-86 T 13-10-2018 CS348_15325 aa31d919566c752ab28d8a8a61ab84aa 227 SUPERFAMILY SSF52540 6 224 1.0E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15325 aa31d919566c752ab28d8a8a61ab84aa 227 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.497 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CS348_15325 aa31d919566c752ab28d8a8a61ab84aa 227 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 7.4E-97 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CS348_15325 aa31d919566c752ab28d8a8a61ab84aa 227 Pfam PF02224 Cytidylate kinase 8 221 3.0E-85 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 SUPERFAMILY SSF51735 1 171 1.48E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 Gene3D G3DSA:3.40.50.720 6 330 1.4E-128 T 13-10-2018 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 SMART SM00859 3 146 1.2E-55 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 6.0E-125 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 39.217 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 Gene3D G3DSA:3.30.360.10 153 312 1.4E-128 T 13-10-2018 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 145 9.6E-34 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 7.8E-18 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23010 6a73d49c25925bef9e76e1081c0c02a1 334 SUPERFAMILY SSF55347 154 308 1.12E-48 T 13-10-2018 CS348_23325 7a65f619037c76453a545f8ff32b77b2 395 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 113 279 2.4E-34 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain CS348_23325 7a65f619037c76453a545f8ff32b77b2 395 Pfam PF17482 Phage tail sheath C-terminal domain 280 382 1.8E-18 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Gene3D G3DSA:1.10.10.60 395 441 1.1E-17 T 13-10-2018 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Pfam PF00158 Sigma-54 interaction domain 141 307 9.5E-72 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Pfam PF00072 Response regulator receiver domain 8 117 4.5E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Pfam PF02954 Bacterial regulatory protein, Fis family 403 441 5.5E-15 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Gene3D G3DSA:3.40.50.2300 3 132 2.5E-38 T 13-10-2018 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 SMART SM00382 161 304 9.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 408 425 2.2E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 425 441 2.2E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 SMART SM00448 6 117 6.4E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Gene3D G3DSA:3.40.50.300 133 311 5.9E-65 T 13-10-2018 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 SUPERFAMILY SSF52172 5 185 1.38E-46 T 13-10-2018 IPR011006 CheY-like superfamily CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 SUPERFAMILY SSF46689 397 440 1.25E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 SUPERFAMILY SSF52540 141 385 6.84E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22735 8fc0dca5332a016ff265501c23062ff8 441 Gene3D G3DSA:1.10.8.60 312 392 1.6E-34 T 13-10-2018 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 SUPERFAMILY SSF54814 2 106 1.6E-37 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 Pfam PF07650 KH domain 38 111 1.1E-18 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.1E-41 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 SMART SM00322 60 125 1.6E-6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.15 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 Gene3D G3DSA:3.30.300.20 17 107 8.5E-30 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 Gene3D G3DSA:3.30.1140.32 108 208 3.9E-46 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 SUPERFAMILY SSF54821 108 206 6.93E-41 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02040 015d00c9b7f7f2897a9ebd700c9a9d69 233 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.6E-100 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 PIRSF PIRSF004640 1 363 1.3E-148 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 Gene3D G3DSA:3.30.413.10 262 360 2.3E-23 T 13-10-2018 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 350 9.4E-126 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 357 34.706 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 SUPERFAMILY SSF51717 15 208 1.41E-10 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 Pfam PF04551 GcpE protein 14 353 3.8E-131 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 SUPERFAMILY SSF56014 266 332 1.72E-9 T 13-10-2018 CS348_06945 ed3df05b1adf03249859dc7eb2bfb0c3 372 Gene3D G3DSA:3.20.20.20 1 261 1.7E-105 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_24415 23b1e5f596b8fa9b253ebf5d4819b574 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 4.3E-196 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CS348_24415 23b1e5f596b8fa9b253ebf5d4819b574 330 SUPERFAMILY SSF55681 7 328 4.62E-98 T 13-10-2018 CS348_24415 23b1e5f596b8fa9b253ebf5d4819b574 330 PIRSF PIRSF001555 1 329 1.2E-150 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CS348_24415 23b1e5f596b8fa9b253ebf5d4819b574 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 46.033 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CS348_24415 23b1e5f596b8fa9b253ebf5d4819b574 330 Gene3D G3DSA:3.30.930.10 1 330 2.3E-143 T 13-10-2018 CS348_24415 23b1e5f596b8fa9b253ebf5d4819b574 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 3.1E-93 T 13-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 PIRSF PIRSF000235 1 347 8.8E-199 T 13-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.92 T 13-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 2.5E-78 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 SMART SM01240 7 347 1.9E-138 T 13-10-2018 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 7.1E-209 T 13-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 Gene3D G3DSA:3.20.20.70 1 345 6.7E-116 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_19620 1498741900abdc0cc00c8d21d97acb13 347 SUPERFAMILY SSF51412 6 336 2.35E-99 T 13-10-2018 CS348_08140 2ae487cd5aa88c8db41c5817def6779c 548 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 5 238 4.6E-57 T 13-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 CS348_08140 2ae487cd5aa88c8db41c5817def6779c 548 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 2 548 41.521 T 13-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 CS348_16830 d6807be14194634f8fddb86675a41413 555 Gene3D G3DSA:3.40.50.620 30 247 1.6E-106 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16830 d6807be14194634f8fddb86675a41413 555 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 529 5.3E-64 T 13-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_16830 d6807be14194634f8fddb86675a41413 555 SUPERFAMILY SSF50715 340 548 1.46E-79 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_16830 d6807be14194634f8fddb86675a41413 555 Gene3D G3DSA:2.40.240.10 464 548 1.7E-33 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_16830 d6807be14194634f8fddb86675a41413 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 2.4E-9 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_16830 d6807be14194634f8fddb86675a41413 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 2.4E-9 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_16830 d6807be14194634f8fddb86675a41413 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 2.4E-9 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_16830 d6807be14194634f8fddb86675a41413 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 2.4E-9 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_16830 d6807be14194634f8fddb86675a41413 555 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 4.9E-128 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CS348_16830 d6807be14194634f8fddb86675a41413 555 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_16830 d6807be14194634f8fddb86675a41413 555 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 53.982 T 13-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 CS348_16830 d6807be14194634f8fddb86675a41413 555 Gene3D G3DSA:1.10.1160.10 261 339 2.2E-36 T 13-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 CS348_16830 d6807be14194634f8fddb86675a41413 555 Gene3D G3DSA:2.40.240.10 348 463 2.2E-48 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_16830 d6807be14194634f8fddb86675a41413 555 Gene3D G3DSA:3.90.800.10 101 209 1.6E-106 T 13-10-2018 CS348_16830 d6807be14194634f8fddb86675a41413 555 SUPERFAMILY SSF52374 10 337 4.83E-103 T 13-10-2018 CS348_16830 d6807be14194634f8fddb86675a41413 555 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 552 0.0 T 13-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_14165 79aa912ea92add3444683e63758af8ee 173 SMART SM00458 54 173 2.2E-12 T 13-10-2018 IPR000772 Ricin B, lectin domain CS348_14165 79aa912ea92add3444683e63758af8ee 173 Gene3D G3DSA:2.80.10.50 45 173 2.2E-19 T 13-10-2018 CS348_14165 79aa912ea92add3444683e63758af8ee 173 SUPERFAMILY SSF50370 58 165 1.94E-20 T 13-10-2018 IPR035992 Ricin B-like lectins CS348_14165 79aa912ea92add3444683e63758af8ee 173 Pfam PF00652 Ricin-type beta-trefoil lectin domain 56 165 1.9E-19 T 13-10-2018 IPR000772 Ricin B, lectin domain CS348_03270 377bc7bd6436602aa28928dc1a461a3e 225 Gene3D G3DSA:1.20.1550.10 16 168 8.6E-38 T 13-10-2018 IPR023380 DsbB-like superfamily CS348_03270 377bc7bd6436602aa28928dc1a461a3e 225 Pfam PF02600 Disulfide bond formation protein DsbB 25 213 1.0E-41 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 CS348_03270 377bc7bd6436602aa28928dc1a461a3e 225 Hamap MF_01311 Protein-disulfide oxidoreductase DsbI [dsbI]. 7 224 58.55 T 13-10-2018 IPR023792 Protein-disulfide oxidoreductase DsbI CS348_03270 377bc7bd6436602aa28928dc1a461a3e 225 SUPERFAMILY SSF158442 29 213 2.09E-31 T 13-10-2018 IPR023380 DsbB-like superfamily CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Pfam PF14559 Tetratricopeptide repeat 638 690 1.3E-5 T 13-10-2018 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 825 1159 1.5E-119 T 13-10-2018 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Pfam PF13176 Tetratricopeptide repeat 489 516 0.031 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SUPERFAMILY SSF48452 79 454 3.16E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Gene3D G3DSA:1.25.40.10 580 805 3.0E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SMART SM00028 374 407 1.7 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SMART SM00028 734 767 430.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SMART SM00028 484 517 25.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SMART SM00028 626 659 220.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SMART SM00028 408 441 7.1 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SMART SM00028 326 359 0.0098 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Gene3D G3DSA:1.25.40.10 294 372 8.8E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Gene3D G3DSA:1.25.40.10 373 484 2.2E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SUPERFAMILY SSF48452 489 682 1.64E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 SUPERFAMILY SSF48452 603 761 1.31E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Gene3D G3DSA:1.25.40.10 66 249 2.5E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Pfam PF13432 Tetratricopeptide repeat 298 359 2.7E-6 T 13-10-2018 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Pfam PF13432 Tetratricopeptide repeat 379 440 9.8E-4 T 13-10-2018 CS348_01150 a05d40401bba2dc26379fb5adeeb94e8 1180 Gene3D G3DSA:1.25.40.10 485 579 2.2E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 Pfam PF02050 Flagellar FliJ protein 19 141 3.6E-34 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PIRSF PIRSF019404 1 147 5.9E-51 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 6 144 2.6E-29 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 108 126 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 44 61 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 4 26 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 27 43 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 126 146 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 63 84 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_09875 190cbc869f4bc3dd34d768ac5340a9ab 147 PRINTS PR01004 Flagellar FliJ protein signature 86 107 4.0E-83 T 13-10-2018 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 293 315 - T 13-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 SUPERFAMILY SSF47170 24 180 1.01E-36 T 13-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 Gene3D G3DSA:1.10.287.950 215 517 3.4E-97 T 13-10-2018 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 Pfam PF00672 HAMP domain 215 263 9.7E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 SUPERFAMILY SSF58104 235 517 9.02E-76 T 13-10-2018 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 289 318 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 190 210 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 366 393 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 443 472 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 59 74 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 395 424 2.1E-86 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 SMART SM00319 43 181 1.6E-58 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 SMART SM00283 268 515 5.9E-93 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 Gene3D G3DSA:1.20.120.30 21 194 8.0E-50 T 13-10-2018 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 Pfam PF02203 Tar ligand binding domain homologue 2 175 1.5E-41 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 SMART SM00304 215 267 5.5E-14 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_01350 9e06eb0d396b95c85ba0d1986ad7e65a 547 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 483 1.6E-60 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 13-10-2018 CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 SUPERFAMILY SSF56784 1 265 1.18E-67 T 13-10-2018 IPR036412 HAD-like superfamily CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 2.9E-27 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 9.2E-63 T 13-10-2018 CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 Gene3D G3DSA:3.40.50.1000 5 256 6.0E-83 T 13-10-2018 IPR023214 HAD superfamily CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 260 1.4E-67 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_23995 e2a4ca85d6a5738230bcdde3c4c8cb4a 266 Gene3D G3DSA:3.30.1240.10 82 186 6.0E-83 T 13-10-2018 CS348_16675 f94ef203843b387d993750a732f32397 348 Pfam PF05145 Transition state regulatory protein AbrB 30 339 2.6E-95 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 CS348_16675 f94ef203843b387d993750a732f32397 348 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 183 339 1.3E-43 T 13-10-2018 IPR017516 AbrB duplication CS348_16675 f94ef203843b387d993750a732f32397 348 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 6 161 6.5E-42 T 13-10-2018 IPR017516 AbrB duplication CS348_16675 f94ef203843b387d993750a732f32397 348 PIRSF PIRSF038991 1 347 1.1E-90 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 CS348_08355 7e05070b10cae85621877c7163274255 163 Pfam PF12838 4Fe-4S dicluster domain 107 154 1.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08355 7e05070b10cae85621877c7163274255 163 Pfam PF13187 4Fe-4S dicluster domain 36 80 2.0E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08355 7e05070b10cae85621877c7163274255 163 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 140 151 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08355 7e05070b10cae85621877c7163274255 163 Gene3D G3DSA:3.30.70.20 94 163 1.1E-10 T 13-10-2018 CS348_08355 7e05070b10cae85621877c7163274255 163 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 6 155 1.2E-57 T 13-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 CS348_08355 7e05070b10cae85621877c7163274255 163 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 24 161 22.787 T 13-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 CS348_08355 7e05070b10cae85621877c7163274255 163 Gene3D G3DSA:3.30.70.20 31 83 2.6E-6 T 13-10-2018 CS348_08355 7e05070b10cae85621877c7163274255 163 SUPERFAMILY SSF54862 30 159 9.73E-17 T 13-10-2018 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 10 568 60.215 T 13-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Pfam PF09330 D-lactate dehydrogenase, membrane binding 278 567 2.7E-148 T 13-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Gene3D G3DSA:3.30.43.10 3 103 2.3E-13 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CS348_08810 7c781c1fc8b488e829a885c700614386 576 PIRSF PIRSF000101 4 569 0.0 T 13-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Gene3D G3DSA:3.30.1370.20 435 519 9.6E-44 T 13-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Gene3D G3DSA:3.30.70.610 367 434 3.5E-20 T 13-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Gene3D G3DSA:3.30.70.610 269 346 2.5E-20 T 13-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Pfam PF01565 FAD binding domain 47 166 2.4E-9 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CS348_08810 7c781c1fc8b488e829a885c700614386 576 SUPERFAMILY SSF55103 275 567 3.71E-118 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CS348_08810 7c781c1fc8b488e829a885c700614386 576 Gene3D G3DSA:3.30.465.10 106 268 8.1E-79 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_08810 7c781c1fc8b488e829a885c700614386 576 SUPERFAMILY SSF56176 10 270 4.21E-74 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_08165 88c4422a5b4033b674f140384aa67210 201 SUPERFAMILY SSF53254 57 187 4.32E-16 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_08165 88c4422a5b4033b674f140384aa67210 201 Hamap MF_01868 Lipopolysaccharide core heptose(II)-phosphate phosphatase [ais]. 1 201 61.088 T 13-10-2018 IPR011310 Lipopolysaccharide core heptose(II)-phosphate phosphatase GO:0016791 CS348_08165 88c4422a5b4033b674f140384aa67210 201 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 57 137 1.7E-5 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_08165 88c4422a5b4033b674f140384aa67210 201 Gene3D G3DSA:3.40.50.1240 57 189 8.9E-11 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_08165 88c4422a5b4033b674f140384aa67210 201 PIRSF PIRSF011416 1 201 1.3E-89 T 13-10-2018 IPR011310 Lipopolysaccharide core heptose(II)-phosphate phosphatase GO:0016791 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 391 9.2E-190 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 391 51.773 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 Pfam PF02222 ATP-grasp domain 123 295 7.4E-57 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 SUPERFAMILY SSF56059 113 314 1.22E-55 T 13-10-2018 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 SUPERFAMILY SSF51246 319 391 3.92E-19 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 Gene3D G3DSA:3.30.470.20 197 390 2.1E-61 T 13-10-2018 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 Gene3D G3DSA:3.30.1490.20 123 196 1.8E-33 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 Gene3D G3DSA:3.40.50.20 2 122 2.2E-54 T 13-10-2018 CS348_10335 b74f7107584f49a84ce08388b8fd392a 392 SUPERFAMILY SSF52440 3 112 3.74E-36 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 SUPERFAMILY SSF53623 13 284 1.27E-88 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 Pfam PF02875 Mur ligase family, glutamate ligase domain 287 346 1.1E-6 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 Gene3D G3DSA:3.90.190.20 288 421 1.0E-38 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 SUPERFAMILY SSF53244 286 414 1.7E-34 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 413 2.2E-110 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 52 75 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 PIRSF PIRSF001563 6 418 2.6E-109 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 Gene3D G3DSA:3.40.1190.10 2 287 7.2E-97 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_07810 9512a037bc372c692b1eadd8e42600e6 422 Pfam PF08245 Mur ligase middle domain 54 196 3.5E-10 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CS348_00375 1bd5489da3e828909e069a17970712ce 300 SUPERFAMILY SSF103481 42 148 1.44E-7 T 13-10-2018 CS348_00375 1bd5489da3e828909e069a17970712ce 300 Pfam PF00892 EamA-like transporter family 159 290 1.4E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_00375 1bd5489da3e828909e069a17970712ce 300 Pfam PF00892 EamA-like transporter family 6 145 1.4E-20 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_00375 1bd5489da3e828909e069a17970712ce 300 SUPERFAMILY SSF103481 191 296 1.44E-12 T 13-10-2018 CS348_22910 ce8e2401b93816eb5d7a24814391870a 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 245 6.0E-14 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 CS348_22910 ce8e2401b93816eb5d7a24814391870a 316 Gene3D G3DSA:3.40.50.300 9 316 2.5E-96 T 13-10-2018 CS348_22910 ce8e2401b93816eb5d7a24814391870a 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 4.7E-180 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CS348_22910 ce8e2401b93816eb5d7a24814391870a 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 190.964 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CS348_22910 ce8e2401b93816eb5d7a24814391870a 316 PIRSF PIRSF000545 1 316 8.4E-150 T 13-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CS348_22910 ce8e2401b93816eb5d7a24814391870a 316 SUPERFAMILY SSF52540 9 316 1.67E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01030 93762e79b216f80aadaba2db6e4ebe51 234 Pfam PF03797 Autotransporter beta-domain 90 211 3.3E-12 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_01030 93762e79b216f80aadaba2db6e4ebe51 234 Gene3D G3DSA:2.40.128.130 68 234 2.9E-15 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_01030 93762e79b216f80aadaba2db6e4ebe51 234 PIRSF PIRSF030748 1 234 7.7E-161 T 13-10-2018 IPR016955 Autotransporter, YhjY, predicted CS348_01030 93762e79b216f80aadaba2db6e4ebe51 234 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 91 234 1.6E-5 T 13-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 CS348_01030 93762e79b216f80aadaba2db6e4ebe51 234 SUPERFAMILY SSF103515 88 234 1.06E-12 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_14195 e2a8c4fe2688e98a12cfb4889543bdc2 242 SUPERFAMILY SSF56399 19 233 3.53E-53 T 13-10-2018 CS348_14195 e2a8c4fe2688e98a12cfb4889543bdc2 242 Pfam PF02917 Pertussis toxin, subunit 1 19 180 4.2E-18 T 13-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 CS348_14195 e2a8c4fe2688e98a12cfb4889543bdc2 242 PRINTS PR01395 Bordetella pertussis toxin A subunit signature 16 39 5.4E-5 T 13-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 CS348_14195 e2a8c4fe2688e98a12cfb4889543bdc2 242 PRINTS PR01395 Bordetella pertussis toxin A subunit signature 56 76 5.4E-5 T 13-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 CS348_14195 e2a8c4fe2688e98a12cfb4889543bdc2 242 Gene3D G3DSA:3.90.210.10 19 242 1.5E-68 T 13-10-2018 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 Pfam PF01467 Cytidylyltransferase-like 345 469 3.7E-15 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 1.1E-17 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 Pfam PF00294 pfkB family carbohydrate kinase 13 305 5.3E-57 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 Gene3D G3DSA:3.40.1190.20 3 309 1.4E-111 T 13-10-2018 IPR029056 Ribokinase-like CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 1.0E-64 T 13-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 SUPERFAMILY SSF53613 12 309 3.27E-59 T 13-10-2018 IPR029056 Ribokinase-like CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 Gene3D G3DSA:3.40.50.620 318 477 8.2E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 1.1E-128 T 13-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.671 T 13-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 CS348_03235 77844d8789ddc9801692d7ab87c3f313 477 SUPERFAMILY SSF52374 340 471 9.29E-22 T 13-10-2018 CS348_25695 40a6c2ec199b766ac63e9210e12f3f2e 93 Pfam PF01381 Helix-turn-helix 36 86 4.3E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_25695 40a6c2ec199b766ac63e9210e12f3f2e 93 SMART SM00530 35 90 8.7E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_25695 40a6c2ec199b766ac63e9210e12f3f2e 93 SUPERFAMILY SSF47413 24 86 6.44E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_25695 40a6c2ec199b766ac63e9210e12f3f2e 93 Gene3D G3DSA:1.10.260.40 14 90 4.5E-17 T 13-10-2018 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Pfam PF00270 DEAD/DEAH box helicase 28 187 1.5E-18 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SMART SM00956 411 514 1.3E-46 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 13 601 4.4E-274 T 13-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SMART SM00490 250 331 1.4E-28 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SUPERFAMILY SSF52540 208 455 3.93E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Gene3D G3DSA:3.40.50.300 1 208 2.0E-90 T 13-10-2018 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SMART SM00487 22 216 2.1E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 464 2.6E-206 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Gene3D G3DSA:1.10.10.10 341 522 1.8E-49 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Gene3D G3DSA:1.10.150.80 523 609 5.7E-32 T 13-10-2018 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Pfam PF09382 RQC domain 406 514 4.0E-33 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Pfam PF00570 HRDC domain 533 599 9.1E-25 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Pfam PF16124 RecQ zinc-binding 343 404 1.7E-15 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SUPERFAMILY SSF52540 7 201 1.95E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Gene3D G3DSA:3.40.50.300 209 340 3.7E-44 T 13-10-2018 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SMART SM00341 529 609 1.2E-31 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 SUPERFAMILY SSF47819 530 605 4.8E-26 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 CS348_24015 5a0516a69cda9eec53d9ff4079432960 609 Pfam PF00271 Helicase conserved C-terminal domain 222 330 6.1E-21 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_03300 334970512e0be6e4ec5e611f2a5dcee6 387 SUPERFAMILY SSF52440 174 279 4.89E-39 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_03300 334970512e0be6e4ec5e611f2a5dcee6 387 SUPERFAMILY SSF56059 1 383 8.48E-95 T 13-10-2018 CS348_03300 334970512e0be6e4ec5e611f2a5dcee6 387 Gene3D G3DSA:3.30.1490.330 263 343 2.5E-29 T 13-10-2018 CS348_03300 334970512e0be6e4ec5e611f2a5dcee6 387 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 9.5E-162 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.277 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 Pfam PF01765 Ribosome recycling factor 20 183 7.7E-63 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 Gene3D G3DSA:1.10.132.20 101 185 1.1E-30 T 13-10-2018 CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 Gene3D G3DSA:1.10.132.20 1 34 2.0E-9 T 13-10-2018 CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 SUPERFAMILY SSF55194 2 184 4.84E-71 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 4.6E-80 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CS348_19205 ed37ab2b8cc4d398b0b3b48331f77144 185 Gene3D G3DSA:3.30.1360.40 35 100 1.0E-30 T 13-10-2018 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 275 282 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 PRINTS PR00481 Cytosol aminopeptidase signature 299 314 1.1E-45 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 PRINTS PR00481 Cytosol aminopeptidase signature 190 207 1.1E-45 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 PRINTS PR00481 Cytosol aminopeptidase signature 212 233 1.1E-45 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 PRINTS PR00481 Cytosol aminopeptidase signature 271 291 1.1E-45 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 PRINTS PR00481 Cytosol aminopeptidase signature 249 270 1.1E-45 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 Pfam PF12404 Peptidase 5 81 2.1E-33 T 13-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 109 421 2.2E-103 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 SUPERFAMILY SSF53187 107 426 3.14E-102 T 13-10-2018 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 Gene3D G3DSA:3.40.630.10 95 427 2.3E-105 T 13-10-2018 CS348_06870 2e6cd79cbb0be64dd1f8f4215ca79c0a 427 PIRSF PIRSF036388 1 427 4.6E-233 T 13-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 CS348_02835 e4acfd0b658397547b474671234a9909 294 SUPERFAMILY SSF48452 27 283 2.37E-77 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_02835 e4acfd0b658397547b474671234a9909 294 PIRSF PIRSF004654 1 292 3.2E-120 T 13-10-2018 IPR023605 Lipoprotein NlpI CS348_02835 e4acfd0b658397547b474671234a9909 294 Gene3D G3DSA:1.25.40.10 20 294 3.7E-125 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_02835 e4acfd0b658397547b474671234a9909 294 SMART SM00028 234 267 17.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_02835 e4acfd0b658397547b474671234a9909 294 SMART SM00028 96 129 2.0E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_02835 e4acfd0b658397547b474671234a9909 294 SMART SM00028 62 95 0.0033 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_02835 e4acfd0b658397547b474671234a9909 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 CS348_02835 e4acfd0b658397547b474671234a9909 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 SUPERFAMILY SSF53155 188 266 1.26E-18 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 SUPERFAMILY SSF46689 85 133 4.93E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 PIRSF PIRSF000409 1 353 3.1E-132 T 13-10-2018 IPR016221 Bifunctional regulatory protein Ada CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Gene3D G3DSA:3.40.10.10 1 77 2.7E-33 T 13-10-2018 IPR035451 Ada-like domain superfamily CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 SUPERFAMILY SSF46767 268 348 2.09E-30 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 SUPERFAMILY SSF57884 1 92 1.7E-33 T 13-10-2018 IPR035451 Ada-like domain superfamily CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 SMART SM00342 99 181 8.5E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 319 325 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Gene3D G3DSA:3.30.160.70 175 267 1.4E-29 T 13-10-2018 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Gene3D G3DSA:1.10.10.60 80 146 6.1E-32 T 13-10-2018 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 189 266 5.0E-19 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 269 348 1.9E-36 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 270 348 2.1E-31 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 136 177 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Pfam PF12833 Helix-turn-helix domain 105 182 2.2E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Pfam PF02805 Metal binding domain of Ada 11 75 3.5E-30 T 13-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 CS348_08335 0e1dd69ad26da67fd42faa026a3f25a3 353 Gene3D G3DSA:1.10.10.10 268 353 1.7E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_09405 3f0a618d8c933de1d1200c31710c1dda 370 SUPERFAMILY SSF56796 3 368 2.75E-106 T 13-10-2018 CS348_09405 3f0a618d8c933de1d1200c31710c1dda 370 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 154 182 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_09405 3f0a618d8c933de1d1200c31710c1dda 370 Gene3D G3DSA:1.20.1090.10 167 368 5.0E-60 T 13-10-2018 CS348_09405 3f0a618d8c933de1d1200c31710c1dda 370 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 361 4.2E-106 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_09405 3f0a618d8c933de1d1200c31710c1dda 370 Gene3D G3DSA:3.40.50.1970 1 165 3.7E-44 T 13-10-2018 CS348_20020 0bcf54c78e60cb284c2b294cc6985d01 131 ProDom PD081346 TRANSCRIPTIONAL CAIF OPERON REGULATOR CAI ACTIVATOR TRANSCRIPTION ACTIVATORY FIX REGULATION 1 131 7.0E-73 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_20020 0bcf54c78e60cb284c2b294cc6985d01 131 Pfam PF07180 CaiF/GrlA transcriptional regulator 4 61 1.8E-6 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_20020 0bcf54c78e60cb284c2b294cc6985d01 131 Gene3D G3DSA:1.10.10.10 1 84 1.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00080 eb4a2624dccccebb370a741a0683a117 210 Pfam PF02613 Nitrate reductase delta subunit 51 172 3.7E-24 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_00080 eb4a2624dccccebb370a741a0683a117 210 Hamap MF_01150 Chaperone protein TorD [torD]. 4 202 30.645 T 13-10-2018 IPR023069 Chaperone TorD CS348_00080 eb4a2624dccccebb370a741a0683a117 210 Gene3D G3DSA:1.20.120.1820 4 121 1.3E-30 T 13-10-2018 CS348_00080 eb4a2624dccccebb370a741a0683a117 210 SUPERFAMILY SSF89155 10 198 1.31E-39 T 13-10-2018 IPR036411 TorD-like superfamily CS348_00080 eb4a2624dccccebb370a741a0683a117 210 Gene3D G3DSA:1.20.1280.20 123 210 1.0E-14 T 13-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 5.2E-50 T 13-10-2018 CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 Gene3D G3DSA:3.40.50.1000 5 255 1.1E-92 T 13-10-2018 IPR023214 HAD superfamily CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 213 235 - T 13-10-2018 CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 Gene3D G3DSA:3.30.1240.10 83 189 1.1E-92 T 13-10-2018 CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 232 1.0E-19 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 9.6E-63 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_16125 a731b9b745437ff1c12b6b3ace8f5c05 269 SUPERFAMILY SSF56784 1 262 8.42E-61 T 13-10-2018 IPR036412 HAD-like superfamily CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 467 58.025 T 13-10-2018 IPR026589 Cell division protein FtsP GO:0043093 CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 27 9.7E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Pfam PF07731 Multicopper oxidase 359 469 1.6E-13 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Gene3D G3DSA:2.60.40.420 165 345 3.6E-53 T 13-10-2018 IPR008972 Cupredoxin CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 SUPERFAMILY SSF49503 3 165 1.09E-23 T 13-10-2018 IPR008972 Cupredoxin CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 SUPERFAMILY SSF49503 314 466 1.59E-19 T 13-10-2018 IPR008972 Cupredoxin CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Pfam PF00394 Multicopper oxidase 219 287 2.6E-4 T 13-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 SUPERFAMILY SSF49503 172 310 2.58E-29 T 13-10-2018 IPR008972 Cupredoxin CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Gene3D G3DSA:2.60.40.420 346 470 6.5E-26 T 13-10-2018 IPR008972 Cupredoxin CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Gene3D G3DSA:2.60.40.420 28 164 1.1E-34 T 13-10-2018 IPR008972 Cupredoxin CS348_03385 cab514dc8bc35f8fb4ca5fd0b81f8466 470 Pfam PF07732 Multicopper oxidase 52 166 8.6E-26 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 SUPERFAMILY SSF56672 1 238 4.98E-66 T 13-10-2018 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Pfam PF13438 Domain of unknown function (DUF4113) 373 421 5.6E-22 T 13-10-2018 IPR025188 Domain of unknown function DUF4113 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Pfam PF00817 impB/mucB/samB family 6 149 8.9E-36 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Pfam PF11799 impB/mucB/samB family C-terminal domain 240 354 5.8E-18 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Gene3D G3DSA:3.30.70.270 5 154 7.7E-41 T 13-10-2018 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Gene3D G3DSA:2.30.40.20 10 73 7.7E-41 T 13-10-2018 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Gene3D G3DSA:1.10.150.20 174 230 2.3E-10 T 13-10-2018 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 SUPERFAMILY SSF100879 250 346 2.88E-6 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_25530 97e1a024dd5ddeda182c246e7037e074 423 Gene3D G3DSA:3.30.1490.100 246 355 8.3E-7 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 SUPERFAMILY SSF53613 6 305 1.08E-85 T 13-10-2018 IPR029056 Ribokinase-like CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 Pfam PF00294 pfkB family carbohydrate kinase 6 297 4.4E-76 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 PRINTS PR00990 Ribokinase signature 36 55 5.9E-38 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 PRINTS PR00990 Ribokinase signature 220 231 5.9E-38 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 PRINTS PR00990 Ribokinase signature 9 30 5.9E-38 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 PRINTS PR00990 Ribokinase signature 108 121 5.9E-38 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 PRINTS PR00990 Ribokinase signature 176 191 5.9E-38 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 8 302 1.2E-108 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 Hamap MF_01987 Ribokinase [rbsK]. 5 304 26.118 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CS348_24375 df4fc4937925ee354d29f9cc7d7a683f 309 Gene3D G3DSA:3.40.1190.20 3 309 1.5E-104 T 13-10-2018 IPR029056 Ribokinase-like CS348_23555 ff9b384bb884b2e41aea9a23e8dbf31e 419 Gene3D G3DSA:3.20.20.150 1 419 3.0E-194 T 13-10-2018 CS348_23555 ff9b384bb884b2e41aea9a23e8dbf31e 419 Pfam PF06134 L-rhamnose isomerase (RhaA) 3 418 4.3E-236 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 CS348_23555 ff9b384bb884b2e41aea9a23e8dbf31e 419 TIGRFAM TIGR01748 rhaA: L-rhamnose isomerase 5 418 1.5E-245 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 CS348_23555 ff9b384bb884b2e41aea9a23e8dbf31e 419 ProDom PD042532 ISOMERASE L-RHAMNOSE METAL-BINDING METABOLISM RHAMNOSE MANGANESE ENZYME KINASE 3D-STRUCTURE RHAA/RHAB 9 418 0.0 T 13-10-2018 CS348_23555 ff9b384bb884b2e41aea9a23e8dbf31e 419 Hamap MF_00541 L-rhamnose isomerase [rhaA]. 1 419 278.958 T 13-10-2018 IPR009308 Rhamnose isomerase GO:0008740|GO:0019299|GO:0030145 KEGG: 00051+5.3.1.14 CS348_23555 ff9b384bb884b2e41aea9a23e8dbf31e 419 SUPERFAMILY SSF51658 4 418 4.77E-85 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_09505 2e0aa8f621b965ec30969da533c7201d 379 Gene3D G3DSA:3.30.2110.10 19 188 8.9E-48 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CS348_09505 2e0aa8f621b965ec30969da533c7201d 379 Pfam PF01888 CbiD 17 273 5.7E-92 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CS348_09505 2e0aa8f621b965ec30969da533c7201d 379 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 24 367 2.3E-84 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CS348_09505 2e0aa8f621b965ec30969da533c7201d 379 PIRSF PIRSF026782 13 374 6.8E-132 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CS348_09505 2e0aa8f621b965ec30969da533c7201d 379 SUPERFAMILY SSF111342 8 291 1.22E-84 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CS348_09505 2e0aa8f621b965ec30969da533c7201d 379 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 17 367 30.755 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 CS348_18785 34fc46cec3c4819a29c4260353820bad 192 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 6.7E-85 T 13-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 CS348_18785 34fc46cec3c4819a29c4260353820bad 192 Pfam PF13580 SIS domain 12 146 3.5E-32 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_18785 34fc46cec3c4819a29c4260353820bad 192 SUPERFAMILY SSF53697 1 189 3.84E-52 T 13-10-2018 CS348_18785 34fc46cec3c4819a29c4260353820bad 192 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.879 T 13-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 CS348_18785 34fc46cec3c4819a29c4260353820bad 192 Gene3D G3DSA:3.40.50.10490 1 192 2.8E-73 T 13-10-2018 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 SUPERFAMILY SSF48179 492 595 9.35E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 489 513 - T 13-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Gene3D G3DSA:3.90.226.10 3 302 2.6E-98 T 13-10-2018 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Gene3D G3DSA:1.10.1040.50 495 701 1.3E-73 T 13-10-2018 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 311 489 5.7E-58 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 1 706 52.96 T 13-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Gene3D G3DSA:3.40.50.720 309 494 1.3E-59 T 13-10-2018 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 SUPERFAMILY SSF52096 2 299 6.45E-69 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 204 3.5E-42 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 SUPERFAMILY SSF51735 309 489 4.16E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 6 706 0.0 T 13-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 SUPERFAMILY SSF48179 614 706 2.38E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_07695 284ebb1e2780b4531858e92b92a5b723 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 492 586 2.3E-28 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CS348_21655 b60c549552635111e8ad04d3e73bfc1f 104 Hamap MF_00720 Primosomal replication protein N [priB]. 2 100 23.927 T 13-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 CS348_21655 b60c549552635111e8ad04d3e73bfc1f 104 Pfam PF00436 Single-strand binding protein family 3 87 1.8E-12 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CS348_21655 b60c549552635111e8ad04d3e73bfc1f 104 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 3 99 7.9E-36 T 13-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 CS348_21655 b60c549552635111e8ad04d3e73bfc1f 104 SUPERFAMILY SSF50249 1 103 5.14E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_21655 b60c549552635111e8ad04d3e73bfc1f 104 PIRSF PIRSF003135 1 101 4.4E-50 T 13-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 CS348_21655 b60c549552635111e8ad04d3e73bfc1f 104 Gene3D G3DSA:2.40.50.140 1 104 1.2E-42 T 13-10-2018 CS348_16790 663f2f1b09e09afcf1528063eb468777 176 Pfam PF00258 Flavodoxin 6 160 4.3E-34 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CS348_16790 663f2f1b09e09afcf1528063eb468777 176 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 3.0E-77 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 CS348_16790 663f2f1b09e09afcf1528063eb468777 176 SUPERFAMILY SSF52218 5 168 7.04E-54 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_16790 663f2f1b09e09afcf1528063eb468777 176 PIRSF PIRSF038996 1 172 2.2E-70 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 CS348_16790 663f2f1b09e09afcf1528063eb468777 176 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 CS348_16790 663f2f1b09e09afcf1528063eb468777 176 Gene3D G3DSA:3.40.50.360 3 176 5.2E-60 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_10155 cc2b795a5c1b0f8bc108e2996611037a 129 Gene3D G3DSA:3.40.50.2300 2 129 5.8E-38 T 13-10-2018 CS348_10155 cc2b795a5c1b0f8bc108e2996611037a 129 SMART SM00448 6 120 9.9E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_10155 cc2b795a5c1b0f8bc108e2996611037a 129 Pfam PF00072 Response regulator receiver domain 9 120 4.7E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_10155 cc2b795a5c1b0f8bc108e2996611037a 129 SUPERFAMILY SSF52172 5 125 1.71E-35 T 13-10-2018 IPR011006 CheY-like superfamily CS348_18250 a2c41f6531b0ee6c9ae919fd483368d4 299 SUPERFAMILY SSF48576 1 278 1.6E-88 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CS348_18250 a2c41f6531b0ee6c9ae919fd483368d4 299 Gene3D G3DSA:1.10.600.10 1 299 3.0E-117 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CS348_18250 a2c41f6531b0ee6c9ae919fd483368d4 299 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 215 227 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site CS348_18250 a2c41f6531b0ee6c9ae919fd483368d4 299 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 97 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site CS348_18250 a2c41f6531b0ee6c9ae919fd483368d4 299 Pfam PF00348 Polyprenyl synthetase 34 269 1.0E-56 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 CS348_22505 c303db03795f8b477d3fa526d78b5d70 441 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 410 5.1E-95 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_22505 c303db03795f8b477d3fa526d78b5d70 441 Pfam PF01554 MatE 241 380 1.6E-8 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_22505 c303db03795f8b477d3fa526d78b5d70 441 Pfam PF01554 MatE 17 177 6.5E-32 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 700 8.7E-294 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 SUPERFAMILY SSF81301 180 392 2.62E-62 T 13-10-2018 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Gene3D G3DSA:1.10.3210.10 3 190 5.1E-81 T 13-10-2018 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 SUPERFAMILY SSF109604 3 190 2.7E-75 T 13-10-2018 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Pfam PF13328 HD domain 26 175 3.0E-53 T 13-10-2018 IPR003607 HD/PDEase domain CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Pfam PF13291 ACT domain 623 700 2.5E-15 T 13-10-2018 IPR002912 ACT domain CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.7E-35 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Pfam PF02824 TGS domain 388 447 2.1E-21 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 SMART SM00954 235 345 7.1E-63 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 SMART SM00471 41 153 1.2E-11 T 13-10-2018 IPR003607 HD/PDEase domain CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Gene3D G3DSA:3.10.20.30 381 455 7.9E-30 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Gene3D G3DSA:3.30.70.260 624 703 9.0E-13 T 13-10-2018 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 Gene3D G3DSA:3.30.460.10 193 325 1.4E-47 T 13-10-2018 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 SUPERFAMILY SSF55021 630 700 1.97E-5 T 13-10-2018 CS348_00500 ee458bd954ba5c55dfe848558a377e0a 703 SUPERFAMILY SSF81271 375 447 2.83E-21 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 SUPERFAMILY SSF51182 27 162 1.25E-15 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 226 268 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 Pfam PF12833 Helix-turn-helix domain 200 274 7.6E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 Gene3D G3DSA:1.10.10.60 172 277 5.1E-22 T 13-10-2018 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 SMART SM00342 189 272 2.1E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 Gene3D G3DSA:2.60.120.10 1 99 1.7E-11 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 SUPERFAMILY SSF46689 225 275 7.62E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 256 2.7E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 272 2.7E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_13740 506d3737d2c5e3558be82a703d6cf370 280 Pfam PF07883 Cupin domain 29 81 2.0E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_18585 5c14e8564117d2d81a79018ac579bb49 990 SUPERFAMILY SSF52540 50 548 4.52E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18585 5c14e8564117d2d81a79018ac579bb49 990 SUPERFAMILY SSF52540 8 246 3.43E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18585 5c14e8564117d2d81a79018ac579bb49 990 Pfam PF04851 Type III restriction enzyme, res subunit 7 229 1.7E-33 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CS348_18585 5c14e8564117d2d81a79018ac579bb49 990 Gene3D G3DSA:3.40.50.300 357 591 8.5E-6 T 13-10-2018 CS348_18585 5c14e8564117d2d81a79018ac579bb49 990 Pfam PF08774 VRR-NUC domain 874 970 3.7E-11 T 13-10-2018 IPR014883 VRR-NUC domain GO:0016788 Reactome: R-HSA-6783310 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 2 157 2.5E-86 T 13-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 PIRSF PIRSF006092 1 157 2.1E-45 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 7.8E-23 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 28.456 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 SUPERFAMILY SSF46557 3 78 7.46E-28 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 Gene3D G3DSA:1.10.287.180 1 76 4.4E-33 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 2.1E-26 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 Gene3D G3DSA:3.10.50.30 77 157 2.5E-33 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 SUPERFAMILY SSF54534 80 155 1.26E-19 T 13-10-2018 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CS348_01660 e4a113c2d4a7d464a7ffa394a6b2adf4 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 54.026 T 13-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 CS348_01815 308f6a556966e5ed1cb6e110629a7ef6 393 Pfam PF07690 Major Facilitator Superfamily 14 319 5.4E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_01815 308f6a556966e5ed1cb6e110629a7ef6 393 Hamap MF_01044 Protein TsgA [tsgA]. 1 388 30.164 T 13-10-2018 IPR023528 Major facilitator superfamily transporter, TsgA CS348_01815 308f6a556966e5ed1cb6e110629a7ef6 393 Gene3D G3DSA:1.20.1250.20 2 187 4.8E-16 T 13-10-2018 CS348_01815 308f6a556966e5ed1cb6e110629a7ef6 393 SUPERFAMILY SSF103473 4 385 9.42E-37 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01815 308f6a556966e5ed1cb6e110629a7ef6 393 Gene3D G3DSA:1.20.1250.20 206 385 4.9E-21 T 13-10-2018 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 SMART SM01091 492 573 3.9E-15 T 13-10-2018 IPR005170 Transporter-associated domain CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 SUPERFAMILY SSF56176 497 571 2.45E-9 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Gene3D G3DSA:3.30.465.10 491 570 9.1E-8 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Gene3D G3DSA:1.20.1530.20 6 392 1.5E-17 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Pfam PF03471 Transporter associated domain 493 571 5.9E-10 T 13-10-2018 IPR005170 Transporter-associated domain CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Pfam PF02080 TrkA-C domain 420 483 1.1E-11 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Gene3D G3DSA:3.30.70.1450 415 487 1.4E-12 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Pfam PF00999 Sodium/hydrogen exchanger family 16 387 5.5E-59 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 576 49.88 T 13-10-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 CS348_10815 efe4553dbcfbe43f8f04912e21cec3ac 577 SUPERFAMILY SSF116726 419 483 2.22E-11 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_13780 5910f0ca2e93ce23dba4da113637f51b 161 PIRSF PIRSF034445 1 152 7.3E-30 T 13-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 CS348_13780 5910f0ca2e93ce23dba4da113637f51b 161 Pfam PF07813 LTXXQ motif family protein 46 141 6.8E-22 T 13-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 CS348_13780 5910f0ca2e93ce23dba4da113637f51b 161 Gene3D G3DSA:1.20.120.1490 38 147 2.6E-39 T 13-10-2018 CS348_05510 81d18cebdc6839a8fa84ee74e069a44e 115 Pfam PF07377 Protein of unknown function (DUF1493) 6 115 2.4E-37 T 13-10-2018 IPR010862 Protein of unknown function DUF1493 CS348_20915 925d18904701a60b013bda6adccc5206 179 Gene3D G3DSA:1.10.8.1180 84 154 2.3E-34 T 13-10-2018 CS348_20915 925d18904701a60b013bda6adccc5206 179 Hamap MF_01061 Primosomal protein 1 [dnaT]. 3 179 40.794 T 13-10-2018 IPR020917 Primosomal protein 1 GO:0006260 CS348_16810 489bb214b49241e9457e4a33eadd0e64 379 TIGRFAM TIGR02484 CitB: CitB domain protein 15 374 1.5E-119 T 13-10-2018 IPR012830 Citrate utilization protein B CS348_16810 489bb214b49241e9457e4a33eadd0e64 379 SUPERFAMILY SSF54862 20 105 1.63E-6 T 13-10-2018 CS348_16810 489bb214b49241e9457e4a33eadd0e64 379 SUPERFAMILY SSF103501 158 370 1.28E-34 T 13-10-2018 IPR036197 NarG-like superfamily CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 SUPERFAMILY SSF52540 332 580 5.74E-97 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 4.1E-273 T 13-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 Gene3D G3DSA:3.40.50.300 332 582 2.7E-98 T 13-10-2018 CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 SUPERFAMILY SSF90123 8 325 3.53E-75 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 Gene3D G3DSA:1.20.1560.10 1 330 2.0E-80 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 Pfam PF00005 ABC transporter 359 509 1.9E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 Pfam PF00664 ABC transporter transmembrane region 27 297 6.2E-61 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 SMART SM00382 368 541 1.3E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15305 3e5bc33d5c2c33f8ae0bafe14ae029ca 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 Gene3D G3DSA:1.10.3080.10 31 473 1.0E-167 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 Pfam PF00654 Voltage gated chloride channel 89 437 1.3E-91 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 Hamap MF_01128 H(+)/Cl(-) exchange transporter ClcA [clcA]. 3 469 54.627 T 13-10-2018 IPR023861 Chloride channel, ClcA GO:0005887|GO:0006821|GO:0015108 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 PRINTS PR00762 Chloride channel signature 352 372 1.2E-28 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 PRINTS PR00762 Chloride channel signature 405 424 1.2E-28 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 PRINTS PR00762 Chloride channel signature 387 403 1.2E-28 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 PRINTS PR00762 Chloride channel signature 102 119 1.2E-28 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 PRINTS PR00762 Chloride channel signature 183 202 1.2E-28 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_19305 556ac74ba1fbb4329a92cc80fdb486e0 473 SUPERFAMILY SSF81340 16 452 6.67E-112 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 CS348_13370 1179b28c8c07667e762d15dde1f019a9 249 SMART SM00382 25 210 4.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_13370 1179b28c8c07667e762d15dde1f019a9 249 Pfam PF00005 ABC transporter 18 162 3.7E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_13370 1179b28c8c07667e762d15dde1f019a9 249 ProSitePatterns PS00211 ABC transporters family signature. 127 141 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_13370 1179b28c8c07667e762d15dde1f019a9 249 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 4 248 46.144 T 13-10-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 CS348_13370 1179b28c8c07667e762d15dde1f019a9 249 SUPERFAMILY SSF52540 14 226 1.78E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_13370 1179b28c8c07667e762d15dde1f019a9 249 Gene3D G3DSA:3.40.50.300 2 249 2.5E-64 T 13-10-2018 CS348_22545 52446550d8f59b9ab07744647e85f859 369 Pfam PF00005 ABC transporter 20 161 6.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_22545 52446550d8f59b9ab07744647e85f859 369 Gene3D G3DSA:3.40.50.300 1 239 4.1E-75 T 13-10-2018 CS348_22545 52446550d8f59b9ab07744647e85f859 369 SUPERFAMILY SSF50331 236 364 1.38E-31 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_22545 52446550d8f59b9ab07744647e85f859 369 SMART SM00382 28 211 4.3E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_22545 52446550d8f59b9ab07744647e85f859 369 Gene3D G3DSA:2.40.50.140 292 345 7.3E-33 T 13-10-2018 CS348_22545 52446550d8f59b9ab07744647e85f859 369 SUPERFAMILY SSF52540 4 243 5.32E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22545 52446550d8f59b9ab07744647e85f859 369 Pfam PF08402 TOBE domain 281 353 5.3E-12 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CS348_22545 52446550d8f59b9ab07744647e85f859 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_22545 52446550d8f59b9ab07744647e85f859 369 Gene3D G3DSA:2.40.50.100 240 291 9.1E-21 T 13-10-2018 CS348_23350 a6347be8aced7eba0f892042fe018b75 115 Gene3D G3DSA:3.10.450.40 7 113 1.9E-20 T 13-10-2018 CS348_23350 a6347be8aced7eba0f892042fe018b75 115 Pfam PF04965 Gene 25-like lysozyme 18 103 2.0E-16 T 13-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD CS348_23350 a6347be8aced7eba0f892042fe018b75 115 SUPERFAMILY SSF160719 16 113 3.01E-29 T 13-10-2018 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 2.6E-109 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 303 2.1E-69 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 SUPERFAMILY SSF52440 3 96 4.99E-29 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_19685 b73c106b172e824d76c03cf312861cbb 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 1.7E-17 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 36.254 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 Gene3D G3DSA:3.30.470.20 85 302 6.6E-87 T 13-10-2018 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 SUPERFAMILY SSF56059 97 302 5.39E-58 T 13-10-2018 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 Gene3D G3DSA:3.40.50.20 1 84 2.6E-31 T 13-10-2018 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 PIRSF PIRSF039102 35 306 2.2E-97 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 PIRSF PIRSF039102 1 44 1.8E-7 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 Gene3D G3DSA:3.30.1490.20 111 183 6.6E-87 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_19685 b73c106b172e824d76c03cf312861cbb 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_18280 8c744a3beb7fb1eb749631a336eee26a 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 6.9E-59 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_18280 8c744a3beb7fb1eb749631a336eee26a 156 Gene3D G3DSA:3.40.50.960 1 156 2.8E-64 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_18280 8c744a3beb7fb1eb749631a336eee26a 156 SUPERFAMILY SSF52121 5 154 2.22E-58 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_18280 8c744a3beb7fb1eb749631a336eee26a 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 5.6E-55 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_18280 8c744a3beb7fb1eb749631a336eee26a 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.34 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_24110 3d5d1550a76bb7ad92f3e91186678107 246 SUPERFAMILY SSF69618 1 245 1.57E-51 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24110 3d5d1550a76bb7ad92f3e91186678107 246 Gene3D G3DSA:3.40.50.10090 32 165 1.9E-70 T 13-10-2018 CS348_24110 3d5d1550a76bb7ad92f3e91186678107 246 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 1.5E-36 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CS348_24110 3d5d1550a76bb7ad92f3e91186678107 246 Gene3D G3DSA:3.40.50.10090 4 245 1.9E-70 T 13-10-2018 CS348_13205 8d8a84084f66370e50cee7708c41d5e5 333 Pfam PF03734 L,D-transpeptidase catalytic domain 98 232 1.4E-20 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CS348_13205 8d8a84084f66370e50cee7708c41d5e5 333 SMART SM00257 41 85 4.6E-7 T 13-10-2018 IPR018392 LysM domain CS348_13205 8d8a84084f66370e50cee7708c41d5e5 333 Gene3D G3DSA:2.40.440.10 21 303 2.7E-81 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_13205 8d8a84084f66370e50cee7708c41d5e5 333 Pfam PF01476 LysM domain 42 85 5.3E-9 T 13-10-2018 IPR018392 LysM domain CS348_13205 8d8a84084f66370e50cee7708c41d5e5 333 SUPERFAMILY SSF141523 95 232 1.7E-29 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_07215 86c450faced92c5db17f94d462d8e203 316 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 13 310 2.3E-101 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_07215 86c450faced92c5db17f94d462d8e203 316 Gene3D G3DSA:3.20.20.70 1 316 9.1E-137 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_07215 86c450faced92c5db17f94d462d8e203 316 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_07215 86c450faced92c5db17f94d462d8e203 316 Hamap MF_00492 Transaldolase [tal]. 1 316 52.86 T 13-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_07215 86c450faced92c5db17f94d462d8e203 316 TIGRFAM TIGR00874 talAB: transaldolase 2 316 1.3E-161 T 13-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_07215 86c450faced92c5db17f94d462d8e203 316 SUPERFAMILY SSF51569 1 315 1.88E-113 T 13-10-2018 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 18 907 0.0 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 SUPERFAMILY SSF81665 32 905 5.23E-101 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 SMART SM00831 30 103 5.7E-20 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:3.40.1110.10 387 397 8.1E-84 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 756 769 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 811 832 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 307 326 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 724 735 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 411 424 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 776 792 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 861 882 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 706 721 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 PRINTS PR01836 Magnesium-transporting ATPase signature 290 306 1.4E-89 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 379 385 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:1.20.1110.10 693 807 1.1E-77 T 13-10-2018 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 SUPERFAMILY SSF81653 166 277 1.09E-25 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:3.40.1110.10 439 555 1.1E-77 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Pfam PF00122 E1-E2 ATPase 149 357 3.1E-40 T 13-10-2018 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:2.70.150.10 48 259 8.1E-84 T 13-10-2018 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:1.20.1110.10 78 373 8.1E-84 T 13-10-2018 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Pfam PF00702 haloacid dehalogenase-like hydrolase 373 662 3.8E-19 T 13-10-2018 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Pfam PF00690 Cation transporter/ATPase, N-terminus 34 98 8.8E-18 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Pfam PF00689 Cation transporting ATPase, C-terminus 731 899 1.5E-16 T 13-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:3.40.50.1000 556 692 1.1E-77 T 13-10-2018 IPR023214 HAD superfamily CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 617 737 6.7E-30 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 274 411 2.2E-19 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 SUPERFAMILY SSF56784 375 747 1.41E-35 T 13-10-2018 IPR036412 HAD-like superfamily CS348_00385 d684ea0b8cbc8d56ed60208fb08361d8 908 Gene3D G3DSA:3.40.50.1000 374 386 8.1E-84 T 13-10-2018 IPR023214 HAD superfamily CS348_01125 943797de2717816bb2f004ca84670a3a 67 ProDom PD053230 YHJR ECS4415 STY4179 CYTOPLASMIC 1 60 6.0E-29 T 13-10-2018 IPR024487 Protein YhjR CS348_01125 943797de2717816bb2f004ca84670a3a 67 Pfam PF10945 Cellulose biosynthesis protein BcsR 18 59 5.4E-23 T 13-10-2018 IPR024487 Protein YhjR CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Pfam PF08279 HTH domain 10 58 1.1E-12 T 13-10-2018 IPR013196 Helix-turn-helix, type 11 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Gene3D G3DSA:3.30.930.10 65 270 2.4E-77 T 13-10-2018 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 32.399 T 13-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 317 2.4E-83 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 SUPERFAMILY SSF55681 73 268 1.66E-57 T 13-10-2018 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 76 4.1E-28 T 13-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 6.1E-24 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 1.8E-11 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Gene3D G3DSA:2.30.30.100 271 313 4.2E-25 T 13-10-2018 CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 SUPERFAMILY SSF50037 271 317 7.78E-11 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 SUPERFAMILY SSF46785 5 60 1.22E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22915 ef98a8f4b357416407a1a970c557dc72 320 Gene3D G3DSA:1.10.10.10 1 64 1.6E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Gene3D G3DSA:3.30.565.10 303 456 7.7E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_23495 ca63236e4f7630eef0185c18973b0939 457 SMART SM00388 238 300 1.2E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Gene3D G3DSA:3.30.450.210 27 147 1.1E-10 T 13-10-2018 IPR038515 CpxA, periplasmic domain superfamily CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 299 3.2E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 146 1.4E-10 T 13-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 454 6.2E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_23495 ca63236e4f7630eef0185c18973b0939 457 SMART SM00304 184 237 1.1E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 SUPERFAMILY SSF47384 224 299 2.94E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 SMART SM00387 345 455 2.7E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Pfam PF00672 HAMP domain 184 234 5.7E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 2.9E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 2.9E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 2.9E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 452 2.9E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 Gene3D G3DSA:1.10.287.130 188 302 1.7E-39 T 13-10-2018 CS348_23495 ca63236e4f7630eef0185c18973b0939 457 SUPERFAMILY SSF55874 289 453 1.88E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 SUPERFAMILY SSF55890 330 397 4.84E-6 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 Gene3D G3DSA:3.30.565.10 397 539 4.1E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 Gene3D G3DSA:3.30.450.20 206 320 4.0E-13 T 13-10-2018 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 SMART SM00387 426 537 1.2E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 485 495 7.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 481 7.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 7.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 7.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 Gene3D G3DSA:3.30.450.20 38 171 7.3E-46 T 13-10-2018 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 Pfam PF17203 Single cache domain 3 44 173 2.3E-19 T 13-10-2018 IPR033463 Single cache domain 3 CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 433 536 1.1E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 SUPERFAMILY SSF55785 224 278 1.77E-6 T 13-10-2018 IPR035965 PAS domain superfamily CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 SUPERFAMILY SSF103190 45 172 2.28E-35 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 SMART SM00091 220 290 0.0018 T 13-10-2018 IPR000014 PAS domain CS348_20095 f5f49501dfe73b2802299cacb1ce4108 539 SUPERFAMILY SSF55874 398 535 4.32E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_11910 d690c9a92e21011fcb6b4f594320f36f 93 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 4 60 2.9E-12 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_11910 d690c9a92e21011fcb6b4f594320f36f 93 Gene3D G3DSA:3.40.50.2300 2 92 5.4E-27 T 13-10-2018 CS348_11910 d690c9a92e21011fcb6b4f594320f36f 93 SUPERFAMILY SSF52794 2 90 6.8E-19 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_19200 960343800890e1dde263e61764d527ce 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 396 5.0E-190 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 3.5E-41 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 SUPERFAMILY SSF55347 126 274 2.45E-62 T 13-10-2018 CS348_19200 960343800890e1dde263e61764d527ce 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 6.0E-36 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 PIRSF PIRSF006205 1 398 3.7E-159 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 SUPERFAMILY SSF69055 301 393 3.01E-31 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 46.859 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 SUPERFAMILY SSF51735 2 150 2.46E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_19200 960343800890e1dde263e61764d527ce 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 1.3E-48 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CS348_19200 960343800890e1dde263e61764d527ce 398 Gene3D G3DSA:1.10.1740.10 312 398 5.6E-32 T 13-10-2018 CS348_19200 960343800890e1dde263e61764d527ce 398 Gene3D G3DSA:3.40.50.720 1 150 2.3E-59 T 13-10-2018 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 13-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 54 2.1E-21 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_03185 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 2.6E-270 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Pfam PF01380 SIS domain 289 418 2.2E-34 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Pfam PF01380 SIS domain 462 591 4.8E-31 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 41.54 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 SUPERFAMILY SSF56235 2 232 6.95E-75 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_24500 e6e45b3c33724efc42923df90977bde1 609 SUPERFAMILY SSF53697 245 609 1.16E-114 T 13-10-2018 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Gene3D G3DSA:3.40.50.10490 447 594 3.3E-160 T 13-10-2018 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Gene3D G3DSA:3.60.20.10 2 241 1.9E-84 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Pfam PF13522 Glutamine amidotransferase domain 65 182 1.8E-21 T 13-10-2018 CS348_24500 e6e45b3c33724efc42923df90977bde1 609 Gene3D G3DSA:3.40.50.10490 249 608 3.3E-160 T 13-10-2018 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 Gene3D G3DSA:2.40.160.10 23 363 9.3E-138 T 13-10-2018 IPR023614 Porin domain superfamily CS348_15225 08202bf16186bd1c3590aba670b8165b 363 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 316 332 - T 13-10-2018 IPR013793 Porin, Gram-negative type, conserved site CS348_15225 08202bf16186bd1c3590aba670b8165b 363 SUPERFAMILY SSF56935 23 363 3.05E-72 T 13-10-2018 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 2.1E-67 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00183 E.coli/Salmonella-type porin signature 98 120 2.1E-67 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00183 E.coli/Salmonella-type porin signature 237 254 2.1E-67 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00183 E.coli/Salmonella-type porin signature 53 71 2.1E-67 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00183 E.coli/Salmonella-type porin signature 271 290 2.1E-67 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00183 E.coli/Salmonella-type porin signature 155 177 2.1E-67 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 54 65 1.8E-16 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 1.8E-16 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 231 243 1.8E-16 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 98 108 1.8E-16 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 316 333 1.8E-16 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_15225 08202bf16186bd1c3590aba670b8165b 363 Pfam PF00267 Gram-negative porin 28 363 4.6E-142 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_19900 764e9e41b9059de9303d8d3bbec2808c 282 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 52.369 T 13-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 CS348_19900 764e9e41b9059de9303d8d3bbec2808c 282 SUPERFAMILY SSF56300 1 260 4.46E-57 T 13-10-2018 CS348_19900 764e9e41b9059de9303d8d3bbec2808c 282 Gene3D G3DSA:3.60.21.10 1 280 1.2E-85 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_19900 764e9e41b9059de9303d8d3bbec2808c 282 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 278 1.3E-165 T 13-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 CS348_19900 764e9e41b9059de9303d8d3bbec2808c 282 PIRSF PIRSF000903 1 274 6.7E-125 T 13-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 CS348_19900 764e9e41b9059de9303d8d3bbec2808c 282 Pfam PF00149 Calcineurin-like phosphoesterase 4 139 2.1E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 SUPERFAMILY SSF52518 2 178 1.79E-43 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 SUPERFAMILY SSF52467 182 347 2.49E-43 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 3.7E-39 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 Gene3D G3DSA:3.40.50.1220 179 333 1.1E-53 T 13-10-2018 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 319 2.6E-30 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 SUPERFAMILY SSF52518 357 557 2.4E-59 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 Gene3D G3DSA:3.40.50.970 345 572 1.0E-71 T 13-10-2018 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 5.0E-42 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_15535 93663b9c8f94a02df53af7cb0e82112c 572 Gene3D G3DSA:3.40.50.970 1 178 4.4E-62 T 13-10-2018 CS348_23480 82b796578c8f94275a6774e88fc4f457 326 Gene3D G3DSA:1.10.443.10 163 323 6.7E-38 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_23480 82b796578c8f94275a6774e88fc4f457 326 SUPERFAMILY SSF56349 60 314 4.71E-41 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_23480 82b796578c8f94275a6774e88fc4f457 326 Pfam PF00589 Phage integrase family 164 307 4.0E-18 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_09930 d3436eebfcc7ba27d9ccc730561b4b79 122 Pfam PF05400 Flagellar protein FliT 21 106 6.8E-18 T 13-10-2018 IPR008622 Flagellar protein FliT CS348_09930 d3436eebfcc7ba27d9ccc730561b4b79 122 Gene3D G3DSA:1.20.58.380 1 111 8.7E-37 T 13-10-2018 CS348_09930 d3436eebfcc7ba27d9ccc730561b4b79 122 Hamap MF_01180 Flagellar protein FliT [fliT]. 1 119 25.687 T 13-10-2018 IPR008622 Flagellar protein FliT CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 132 153 3.3E-39 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 45 57 3.3E-39 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 159 170 3.3E-39 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 85 108 3.3E-39 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 Gene3D G3DSA:2.40.160.20 24 171 1.5E-56 T 13-10-2018 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 SUPERFAMILY SSF56925 27 171 5.76E-34 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 46 54 - T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 163 171 - T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_16165 f18679c8d7f88811fbc3dabf0f4eb9f0 171 Pfam PF13505 Outer membrane protein beta-barrel domain 9 171 2.2E-23 T 13-10-2018 IPR027385 Outer membrane protein beta-barrel CS348_06975 9bc1dc559a1ef82da0f6dae7edd01be6 730 Pfam PF11924 Inverse autotransporter, beta-domain 69 342 1.3E-109 T 13-10-2018 IPR024519 Inverse autotransporter, beta-domain CS348_06975 9bc1dc559a1ef82da0f6dae7edd01be6 730 Gene3D G3DSA:2.40.160.160 105 349 7.3E-105 T 13-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily CS348_06975 9bc1dc559a1ef82da0f6dae7edd01be6 730 PRINTS PR01369 Intimin signature 194 209 4.2E-9 T 13-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 CS348_06975 9bc1dc559a1ef82da0f6dae7edd01be6 730 PRINTS PR01369 Intimin signature 222 241 4.2E-9 T 13-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 CS348_06975 9bc1dc559a1ef82da0f6dae7edd01be6 730 PRINTS PR01369 Intimin signature 290 309 4.2E-9 T 13-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 191 9.2E-13 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 5.9E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 5.9E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 5.9E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 Gene3D G3DSA:1.10.150.240 20 91 4.9E-64 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 191 6.9E-22 T 13-10-2018 CS348_13705 b686368497bc036fb6843f2e43e6165f 222 Gene3D G3DSA:3.40.50.1000 10 202 4.9E-64 T 13-10-2018 IPR023214 HAD superfamily CS348_13705 b686368497bc036fb6843f2e43e6165f 222 SUPERFAMILY SSF56784 7 216 1.1E-49 T 13-10-2018 IPR036412 HAD-like superfamily CS348_07560 984d2ff9c970ffd8179fa4e245ad5b5c 322 Pfam PF10123 Mu-like prophage I protein 58 182 2.9E-32 T 13-10-2018 IPR012106 Protease, Mu phage/prophage I type CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.99 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.8E-30 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 Gene3D G3DSA:3.30.160.20 1 73 1.6E-34 T 13-10-2018 CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 Gene3D G3DSA:3.30.230.10 74 167 1.3E-38 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 SUPERFAMILY SSF54768 9 75 5.13E-24 T 13-10-2018 CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 SUPERFAMILY SSF54211 79 159 3.54E-27 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 1.4E-71 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CS348_02095 5e26b9261841fedfc3f886e196ad600b 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.7E-29 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 Gene3D G3DSA:3.40.930.10 490 637 2.3E-56 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 SUPERFAMILY SSF52794 377 466 5.75E-22 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 SUPERFAMILY SSF55804 496 634 8.24E-41 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 Gene3D G3DSA:3.40.50.2300 366 471 1.8E-38 T 13-10-2018 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 539 555 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 8 347 4.2E-189 T 13-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 379 453 2.0E-9 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 498 634 4.7E-33 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_00780 aac9d4f8ec9b23171acbcf3174c04107 637 Pfam PF02378 Phosphotransferase system, EIIC 17 277 1.9E-20 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 6.4E-112 T 13-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 40.042 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 PIRSF PIRSF000370 1 223 1.6E-73 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 Pfam PF04055 Radical SAM superfamily 27 181 1.5E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 3.1E-14 T 13-10-2018 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 Gene3D G3DSA:3.20.20.70 2 223 3.9E-55 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_05265 db37a8f94efd373d369843bcdbbc3fc1 223 SUPERFAMILY SSF102114 24 119 5.49E-7 T 13-10-2018 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 15 321 2.3E-49 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 58.383 T 13-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 2.5E-6 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 2.5E-6 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 Gene3D G3DSA:3.30.930.10 1 325 1.3E-131 T 13-10-2018 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 SUPERFAMILY SSF55681 12 320 4.18E-85 T 13-10-2018 CS348_21895 ed26b8fdc120d403e1c01940d2f77cd0 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 3.3E-135 T 13-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 CS348_04195 229d2de254f46a5910c25bee52ac83eb 83 SUPERFAMILY SSF159871 8 83 3.53E-12 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_04195 229d2de254f46a5910c25bee52ac83eb 83 Pfam PF07338 Protein of unknown function (DUF1471) 28 83 7.2E-8 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_04195 229d2de254f46a5910c25bee52ac83eb 83 Gene3D G3DSA:3.30.1660.10 16 83 4.0E-18 T 13-10-2018 IPR025543 Dodecin-like CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 SUPERFAMILY SSF48029 5 104 1.94E-18 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 Gene3D G3DSA:1.10.220.30 90 190 5.2E-26 T 13-10-2018 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 247 267 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 33 59 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 271 297 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 114 137 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 194 219 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 225 245 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PRINTS PR00954 Flagellar motor switch protein FliG signature 4 20 1.5E-75 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 1 331 1.6E-150 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 Pfam PF14842 FliG N-terminal domain 3 103 1.2E-29 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 SUPERFAMILY SSF48029 115 324 3.79E-63 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 Gene3D G3DSA:1.10.220.30 1 84 7.6E-19 T 13-10-2018 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 Pfam PF14841 FliG middle domain 115 186 3.0E-24 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 Gene3D G3DSA:1.10.220.30 194 331 7.3E-43 T 13-10-2018 CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 Pfam PF01706 FliG C-terminal domain 218 323 8.5E-38 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal CS348_09890 8b9182a5e42c7f6d0ed731548b7e0795 331 PIRSF PIRSF003161 1 331 1.2E-117 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 CS348_24570 fdffc24cbd1ca205e95cdfa163ee03ca 194 SUPERFAMILY SSF52218 12 181 1.43E-42 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_24570 fdffc24cbd1ca205e95cdfa163ee03ca 194 Pfam PF03358 NADPH-dependent FMN reductase 12 154 2.5E-38 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CS348_24570 fdffc24cbd1ca205e95cdfa163ee03ca 194 Gene3D G3DSA:3.40.50.360 7 194 4.5E-60 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 SMART SM00232 4 125 0.0027 T 13-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 SUPERFAMILY SSF102712 5 95 2.35E-16 T 13-10-2018 CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 Gene3D G3DSA:3.90.1720.10 105 219 1.9E-7 T 13-10-2018 CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 SUPERFAMILY SSF54001 98 224 6.54E-18 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 Gene3D G3DSA:3.40.140.10 2 104 6.8E-20 T 13-10-2018 CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 Pfam PF14464 Prokaryotic homologs of the JAB domain 4 95 6.3E-14 T 13-10-2018 IPR028090 JAB domain, prokaryotic CS348_17470 3ca304d79ac1c5a3defb1d8d8357d4dd 245 Pfam PF00877 NlpC/P60 family 109 222 3.5E-14 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CS348_01240 e9868a30ce6614f78e18a1839c385250 439 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 369 7.9E-145 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_01240 e9868a30ce6614f78e18a1839c385250 439 PIRSF PIRSF004539 1 438 9.7E-182 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_01240 e9868a30ce6614f78e18a1839c385250 439 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 438 1.1E-149 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_18215 165306ddbf172656177befb170269ecb 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 4.1E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_18215 165306ddbf172656177befb170269ecb 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 4.1E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_18215 165306ddbf172656177befb170269ecb 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.4E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_18215 165306ddbf172656177befb170269ecb 239 Gene3D G3DSA:1.10.10.10 8 77 7.8E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18215 165306ddbf172656177befb170269ecb 239 Gene3D G3DSA:3.40.1410.10 81 237 3.2E-33 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_18215 165306ddbf172656177befb170269ecb 239 SUPERFAMILY SSF46785 3 77 1.44E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_18215 165306ddbf172656177befb170269ecb 239 SMART SM00345 14 73 1.1E-19 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_18215 165306ddbf172656177befb170269ecb 239 SUPERFAMILY SSF64288 61 237 1.73E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_18215 165306ddbf172656177befb170269ecb 239 TIGRFAM TIGR03337 phnR: phosphonate utilization transcriptional regulator PhnR 9 239 2.6E-124 T 13-10-2018 IPR017722 Phosphonate utilization transcriptional regulator PhnR CS348_18215 165306ddbf172656177befb170269ecb 239 SMART SM00866 94 233 6.2E-31 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_18215 165306ddbf172656177befb170269ecb 239 Pfam PF07702 UTRA domain 94 232 1.3E-35 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 SUPERFAMILY SSF56059 1 238 9.72E-82 T 13-10-2018 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.505 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 Pfam PF00549 CoA-ligase 262 382 4.7E-25 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 4.1E-184 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 Gene3D G3DSA:3.30.470.20 1 234 7.8E-97 T 13-10-2018 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 PIRSF PIRSF001554 1 388 1.8E-154 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 SUPERFAMILY SSF52210 239 385 1.44E-53 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 Gene3D G3DSA:3.40.50.261 240 388 3.2E-57 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 Pfam PF08442 ATP-grasp domain 2 203 4.5E-83 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CS348_16625 5f61ab23e2165961bc8286ef82ff100d 388 Gene3D G3DSA:3.30.1490.20 21 104 7.8E-97 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_14900 28207e795a3468e8281354303e66bf22 168 SUPERFAMILY SSF52833 31 158 1.48E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_14900 28207e795a3468e8281354303e66bf22 168 Pfam PF08534 Redoxin 36 147 1.1E-13 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CS348_14900 28207e795a3468e8281354303e66bf22 168 Gene3D G3DSA:3.40.30.10 26 159 8.5E-24 T 13-10-2018 CS348_01590 59fa1c4178db0e509edc146324abf471 252 SUPERFAMILY SSF46785 3 76 1.57E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_01590 59fa1c4178db0e509edc146324abf471 252 SMART SM01134 72 233 3.3E-72 T 13-10-2018 CS348_01590 59fa1c4178db0e509edc146324abf471 252 SMART SM00420 6 58 1.5E-27 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01590 59fa1c4178db0e509edc146324abf471 252 SUPERFAMILY SSF100950 73 233 1.87E-30 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_01590 59fa1c4178db0e509edc146324abf471 252 Gene3D G3DSA:3.30.750.70 69 133 7.6E-9 T 13-10-2018 CS348_01590 59fa1c4178db0e509edc146324abf471 252 Gene3D G3DSA:1.10.10.10 1 55 1.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01590 59fa1c4178db0e509edc146324abf471 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 4.4E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01590 59fa1c4178db0e509edc146324abf471 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 4.4E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01590 59fa1c4178db0e509edc146324abf471 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 5.3E-25 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01590 59fa1c4178db0e509edc146324abf471 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_01590 59fa1c4178db0e509edc146324abf471 252 Pfam PF00455 DeoR C terminal sensor domain 74 231 2.4E-55 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_06615 6c9e875882f51c75bd5946206f135f24 318 Gene3D G3DSA:3.30.200.100 218 318 2.6E-36 T 13-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily CS348_06615 6c9e875882f51c75bd5946206f135f24 318 Gene3D G3DSA:2.50.20.10 25 209 1.7E-56 T 13-10-2018 CS348_06615 6c9e875882f51c75bd5946206f135f24 318 Pfam PF17188 MucB/RseB C-terminal domain 217 313 2.3E-30 T 13-10-2018 IPR033436 MucB/RseB, C-terminal CS348_06615 6c9e875882f51c75bd5946206f135f24 318 Pfam PF03888 MucB/RseB N-terminal domain 28 204 3.1E-61 T 13-10-2018 IPR033434 MucB/RseB, N-terminal CS348_06615 6c9e875882f51c75bd5946206f135f24 318 PIRSF PIRSF005427 1 318 3.2E-100 T 13-10-2018 IPR005588 MucB/RseB CS348_10955 56a1e0b65778baf461a0772ece585cc5 129 PIRSF PIRSF005610 1 124 1.1E-22 T 13-10-2018 IPR007360 Invasion gene expression up-regulator, SirB CS348_10955 56a1e0b65778baf461a0772ece585cc5 129 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 126 3.4E-38 T 13-10-2018 IPR007360 Invasion gene expression up-regulator, SirB CS348_14315 32b20762b208b1c24d7ea5fce87d0d00 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 413 3.9E-164 T 13-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 CS348_14315 32b20762b208b1c24d7ea5fce87d0d00 414 Pfam PF12704 MacB-like periplasmic core domain 27 239 1.2E-15 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CS348_14315 32b20762b208b1c24d7ea5fce87d0d00 414 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 5 414 3.2E-228 T 13-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 CS348_14315 32b20762b208b1c24d7ea5fce87d0d00 414 Pfam PF02687 FtsX-like permease family 302 407 3.2E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Gene3D G3DSA:1.10.8.60 8 240 2.4E-104 T 13-10-2018 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 361 4.9E-33 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 CS348_17940 4b95e6975f115066f8994df3843398b6 642 SUPERFAMILY SSF48019 243 366 5.1E-37 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Gene3D G3DSA:3.40.50.300 13 177 2.4E-104 T 13-10-2018 CS348_17940 4b95e6975f115066f8994df3843398b6 642 SMART SM00382 37 178 1.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_17940 4b95e6975f115066f8994df3843398b6 642 SUPERFAMILY SSF52540 35 221 5.61E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17940 4b95e6975f115066f8994df3843398b6 642 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 1.2E-133 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 499 639 2.7E-59 T 13-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Gene3D G3DSA:3.30.300.150 497 624 3.4E-50 T 13-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Gene3D G3DSA:1.20.272.10 242 363 3.6E-45 T 13-10-2018 CS348_17940 4b95e6975f115066f8994df3843398b6 642 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.8E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_17940 4b95e6975f115066f8994df3843398b6 642 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.8E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 416 497 1.4E-21 T 13-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_17940 4b95e6975f115066f8994df3843398b6 642 Pfam PF13177 DNA polymerase III, delta subunit 20 178 4.7E-42 T 13-10-2018 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 Hamap MF_01913 3-sulfolactaldehyde reductase. 1 292 63.876 T 13-10-2018 IPR030876 3-sulfolactaldehyde reductase GO:0061596|GO:1902777 MetaCyc: PWY-7446 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 4 160 3.3E-45 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 Gene3D G3DSA:3.40.50.720 1 162 5.5E-48 T 13-10-2018 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 PIRSF PIRSF000103 1 295 9.9E-99 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 SUPERFAMILY SSF51735 3 161 9.46E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 SUPERFAMILY SSF48179 163 286 8.5E-32 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 Gene3D G3DSA:1.10.1040.10 163 294 1.8E-32 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_23680 e7242eb83540ca1b6a9b38bce1620bb2 298 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 284 9.0E-26 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 Pfam PF14815 NUDIX domain 234 343 2.4E-24 T 13-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 SMART SM00525 191 211 3.4E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 Gene3D G3DSA:1.10.1670.10 9 211 2.9E-90 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 SUPERFAMILY SSF48150 3 225 8.17E-79 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 192 208 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 Pfam PF00633 Helix-hairpin-helix motif 100 127 1.2E-8 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 SMART SM00478 39 190 5.5E-54 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 SUPERFAMILY SSF55811 220 344 5.07E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 Gene3D G3DSA:1.10.340.30 21 132 2.9E-90 T 13-10-2018 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 167 3.6E-22 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 Gene3D G3DSA:3.90.79.10 225 347 7.8E-13 T 13-10-2018 CS348_04400 68889c56d6b40a3ae3bde05a6210f2e8 350 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 5 277 1.1E-133 T 13-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 CS348_01340 932617bcc92ec5553348587e225e2fd9 221 Pfam PF02592 Putative vitamin uptake transporter 43 199 1.9E-37 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 CS348_01340 932617bcc92ec5553348587e225e2fd9 221 Hamap MF_02088 Probable queuosine precursor transporter. 7 213 16.02 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 CS348_01340 932617bcc92ec5553348587e225e2fd9 221 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 2.1E-67 T 13-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 525 2.1E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SMART SM00073 5 102 1.2E-35 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SUPERFAMILY SSF55052 165 229 5.75E-19 T 13-10-2018 IPR035891 CheY-binding domain of CheA CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SMART SM00260 518 658 2.0E-43 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Gene3D G3DSA:2.40.50.180 549 613 4.6E-39 T 13-10-2018 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SMART SM00387 386 526 2.3E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 504 1.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 1.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 523 1.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 1.6E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Pfam PF01584 CheW-like domain 531 657 2.4E-26 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Gene3D G3DSA:2.30.30.40 526 654 4.6E-39 T 13-10-2018 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SUPERFAMILY SSF47384 279 342 3.77E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Gene3D G3DSA:3.30.70.400 160 233 2.5E-32 T 13-10-2018 IPR035891 CheY-binding domain of CheA CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SMART SM01231 278 341 4.3E-21 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Gene3D G3DSA:1.20.120.160 1 144 2.9E-52 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Gene3D G3DSA:3.30.565.10 342 525 2.3E-54 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Gene3D G3DSA:1.10.287.560 278 341 7.2E-17 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 279 341 1.1E-17 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Pfam PF09078 CheY binding 166 228 3.5E-21 T 13-10-2018 IPR015162 CheY binding CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 Pfam PF01627 Hpt domain 8 105 2.0E-20 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SUPERFAMILY SSF50341 525 657 3.92E-31 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SUPERFAMILY SSF47226 5 126 7.2E-34 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_10130 5710488f6fd41e69f50af6175454d5d6 671 SUPERFAMILY SSF55874 344 524 1.02E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_19965 cb813bd915f19c84e5cdac0ebff9f5df 95 Gene3D G3DSA:3.30.70.20 8 90 1.6E-7 T 13-10-2018 CS348_19965 cb813bd915f19c84e5cdac0ebff9f5df 95 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 37 91 1.2E-4 T 13-10-2018 CS348_19965 cb813bd915f19c84e5cdac0ebff9f5df 95 PIRSF PIRSF036548 1 95 1.1E-37 T 13-10-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 CS348_19965 cb813bd915f19c84e5cdac0ebff9f5df 95 SUPERFAMILY SSF54862 40 90 3.41E-8 T 13-10-2018 CS348_22005 501f9f815b63967ca385ad944f93189a 191 SUPERFAMILY SSF48498 75 179 5.34E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_22005 501f9f815b63967ca385ad944f93189a 191 Gene3D G3DSA:1.10.357.10 1 186 2.4E-27 T 13-10-2018 CS348_22005 501f9f815b63967ca385ad944f93189a 191 SUPERFAMILY SSF46689 3 60 8.72E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22005 501f9f815b63967ca385ad944f93189a 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 6 49 7.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 8.6E-50 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 70.0 T 13-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 SUPERFAMILY SSF51905 3 335 4.8E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 Gene3D G3DSA:3.30.390.30 345 464 3.2E-32 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 8.2E-26 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 8.2E-26 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 8.2E-26 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 8.2E-26 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 8.2E-26 T 13-10-2018 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 Gene3D G3DSA:3.50.50.60 7 332 1.1E-92 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 2.5E-30 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 SUPERFAMILY SSF55424 345 463 1.05E-30 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 Gene3D G3DSA:3.50.50.60 158 276 1.1E-92 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 5.6E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_22985 56fde0be7fcdd5e41f2568a33bc8132d 466 PIRSF PIRSF000350 2 463 4.3E-70 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CS348_19980 d73c2c40917501dc371eed66daa488f6 256 Gene3D G3DSA:3.40.50.620 1 253 1.4E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_19980 d73c2c40917501dc371eed66daa488f6 256 SUPERFAMILY SSF52402 1 253 6.07E-61 T 13-10-2018 CS348_19980 d73c2c40917501dc371eed66daa488f6 256 SMART SM00893 22 215 1.2E-42 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_19980 d73c2c40917501dc371eed66daa488f6 256 Pfam PF01012 Electron transfer flavoprotein domain 25 210 6.3E-38 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_19980 d73c2c40917501dc371eed66daa488f6 256 Hamap MF_01055 Protein FixA [fixA]. 1 256 53.66 T 13-10-2018 IPR023463 Electron transfer flavoprotein, FixA subunit GO:0009055|GO:0009437 CS348_19980 d73c2c40917501dc371eed66daa488f6 256 PIRSF PIRSF000090 1 255 4.3E-70 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CS348_19980 d73c2c40917501dc371eed66daa488f6 256 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 159 179 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CS348_04565 e727f5e8a0776435718e31301bbbb0d7 169 Pfam PF05068 Mannitol repressor 5 167 4.7E-51 T 13-10-2018 IPR007761 Mannitol repressor MtlR-like CS348_04565 e727f5e8a0776435718e31301bbbb0d7 169 SUPERFAMILY SSF158668 1 167 2.75E-53 T 13-10-2018 IPR038026 MtlR-like superfamily CS348_04565 e727f5e8a0776435718e31301bbbb0d7 169 Gene3D G3DSA:1.20.120.330 1 169 9.9E-65 T 13-10-2018 CS348_24385 b6729a08b0d386a106a379c4c6291237 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 1.6E-50 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Gene3D G3DSA:3.40.50.620 25 631 1.1E-234 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 SUPERFAMILY SSF52374 3 650 1.82E-136 T 13-10-2018 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Pfam PF06827 Zinc finger found in FPG and IleRS 904 932 1.2E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 935 21.333 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Gene3D G3DSA:3.90.740.10 195 408 1.1E-234 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 SUPERFAMILY SSF50677 204 403 4.6E-56 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 SUPERFAMILY SSF47323 654 935 1.38E-72 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Gene3D G3DSA:1.10.730.20 642 935 6.7E-91 T 13-10-2018 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 842 0.0 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 642 1.4E-231 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 Pfam PF08264 Anticodon-binding domain of tRNA 687 841 1.5E-25 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 528 541 8.9E-33 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 8.9E-33 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 8.9E-33 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 8.9E-33 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CS348_20130 4f62f83a0439edefb9871282b4a26d3e 944 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 563 572 8.9E-33 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 130 7.1E-28 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 Gene3D G3DSA:3.90.180.10 20 329 1.5E-112 T 13-10-2018 CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 Pfam PF00107 Zinc-binding dehydrogenase 172 307 3.6E-21 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 SMART SM00829 10 344 8.5E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 SUPERFAMILY SSF50129 1 170 5.48E-48 T 13-10-2018 IPR011032 GroES-like superfamily CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 SUPERFAMILY SSF51735 138 314 2.04E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02925 b8d3bd259c40bbe505a9ce81a2bf2c89 347 Gene3D G3DSA:3.40.50.720 149 286 1.5E-112 T 13-10-2018 CS348_02630 f1a56da185a655df880fde9b4e691dd2 95 SUPERFAMILY SSF69754 1 95 3.27E-33 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CS348_02630 f1a56da185a655df880fde9b4e691dd2 95 Gene3D G3DSA:3.30.160.100 1 95 9.2E-39 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CS348_02630 f1a56da185a655df880fde9b4e691dd2 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 2.9E-27 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CS348_02630 f1a56da185a655df880fde9b4e691dd2 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 4.0E-36 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Gene3D G3DSA:2.160.20.100 147 238 1.4E-22 T 13-10-2018 CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Gene3D G3DSA:2.160.20.100 239 345 4.5E-22 T 13-10-2018 CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Pfam PF00805 Pentapeptide repeats (8 copies) 242 278 1.1E-8 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Pfam PF00805 Pentapeptide repeats (8 copies) 282 321 1.2E-10 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Pfam PF00805 Pentapeptide repeats (8 copies) 187 224 2.1E-8 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Pfam PF00805 Pentapeptide repeats (8 copies) 153 184 4.0E-7 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 Gene3D G3DSA:3.30.2450.10 17 136 1.1E-45 T 13-10-2018 CS348_06190 cdf4bb1330522100c134b497cfd84b41 350 SUPERFAMILY SSF141571 188 334 4.32E-35 T 13-10-2018 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Gene3D G3DSA:1.20.58.1830 5 505 1.6E-150 T 13-10-2018 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 PRINTS PR00207 Flagellin signature 76 95 5.4E-32 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 PRINTS PR00207 Flagellin signature 111 134 5.4E-32 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 PRINTS PR00207 Flagellin signature 37 54 5.4E-32 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Pfam PF08884 Flagellin D3 domain 196 283 1.5E-15 T 13-10-2018 IPR014981 Flagellin D3 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Gene3D G3DSA:2.30.220.10 191 290 1.6E-150 T 13-10-2018 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Gene3D G3DSA:2.170.280.10 177 413 1.6E-150 T 13-10-2018 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Gene3D G3DSA:1.20.1330.10 45 465 1.6E-150 T 13-10-2018 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 SUPERFAMILY SSF64518 1 506 4.18E-120 T 13-10-2018 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Pfam PF00700 Bacterial flagellin C-terminal helical region 420 505 2.2E-31 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CS348_09945 5c5db9fb21f5811b9393859d8f675b2a 506 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 1.0E-44 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CS348_20815 631e5172a357c0873d29b7aac6721344 257 Pfam PF01026 TatD related DNase 6 255 1.4E-69 T 13-10-2018 IPR001130 TatD family GO:0016788 CS348_20815 631e5172a357c0873d29b7aac6721344 257 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 5 13 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CS348_20815 631e5172a357c0873d29b7aac6721344 257 PIRSF PIRSF005902 2 257 5.4E-72 T 13-10-2018 IPR001130 TatD family GO:0016788 CS348_20815 631e5172a357c0873d29b7aac6721344 257 SUPERFAMILY SSF51556 5 257 3.9E-79 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_20815 631e5172a357c0873d29b7aac6721344 257 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 128 138 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CS348_20815 631e5172a357c0873d29b7aac6721344 257 Gene3D G3DSA:3.20.20.140 2 257 7.2E-91 T 13-10-2018 CS348_06910 5403cf39ceb24bdcc8986c290b67ac1c 209 SUPERFAMILY SSF54862 13 196 1.78E-65 T 13-10-2018 CS348_06910 5403cf39ceb24bdcc8986c290b67ac1c 209 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 14 175 2.0E-82 T 13-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B CS348_06910 5403cf39ceb24bdcc8986c290b67ac1c 209 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 111 122 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_06910 5403cf39ceb24bdcc8986c290b67ac1c 209 Pfam PF13247 4Fe-4S dicluster domain 72 165 2.4E-25 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_06910 5403cf39ceb24bdcc8986c290b67ac1c 209 Gene3D G3DSA:3.30.70.20 7 207 1.4E-51 T 13-10-2018 CS348_06910 5403cf39ceb24bdcc8986c290b67ac1c 209 Pfam PF12800 4Fe-4S binding domain 22 36 0.071 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_07985 05a7023b79371e55cc59f8426d65579b 199 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 167 7.0E-46 T 13-10-2018 CS348_07985 05a7023b79371e55cc59f8426d65579b 199 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 43.954 T 13-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 CS348_07985 05a7023b79371e55cc59f8426d65579b 199 SMART SM00471 26 151 6.4E-7 T 13-10-2018 IPR003607 HD/PDEase domain CS348_07985 05a7023b79371e55cc59f8426d65579b 199 SUPERFAMILY SSF109604 2 193 7.99E-46 T 13-10-2018 CS348_07985 05a7023b79371e55cc59f8426d65579b 199 Pfam PF13023 HD domain 11 161 3.2E-15 T 13-10-2018 IPR006674 HD domain CS348_07985 05a7023b79371e55cc59f8426d65579b 199 Gene3D G3DSA:1.10.3210.10 1 199 3.5E-91 T 13-10-2018 CS348_05890 9ebf6e765d1a1c433dd050d6cae3cb5e 165 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 158 1.9E-63 T 13-10-2018 IPR008136 CinA, C-terminal CS348_05890 9ebf6e765d1a1c433dd050d6cae3cb5e 165 Gene3D G3DSA:3.90.950.20 1 162 4.2E-62 T 13-10-2018 IPR036653 CinA-like, C-terminal CS348_05890 9ebf6e765d1a1c433dd050d6cae3cb5e 165 Pfam PF02464 Competence-damaged protein 8 160 1.3E-60 T 13-10-2018 IPR008136 CinA, C-terminal CS348_05890 9ebf6e765d1a1c433dd050d6cae3cb5e 165 SUPERFAMILY SSF142433 4 161 8.76E-59 T 13-10-2018 IPR036653 CinA-like, C-terminal CS348_05475 9074afaa45fe3a47cb69c1cd790ab98f 402 Pfam PF07690 Major Facilitator Superfamily 12 347 1.5E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_05475 9074afaa45fe3a47cb69c1cd790ab98f 402 ProSitePatterns PS00217 Sugar transport proteins signature 2. 103 128 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_05475 9074afaa45fe3a47cb69c1cd790ab98f 402 Gene3D G3DSA:1.20.1720.10 8 386 7.3E-48 T 13-10-2018 CS348_05475 9074afaa45fe3a47cb69c1cd790ab98f 402 SUPERFAMILY SSF103473 3 390 1.44E-59 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 SUPERFAMILY SSF111369 60 305 8.11E-62 T 13-10-2018 CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 Gene3D G3DSA:1.10.287.470 106 179 2.2E-88 T 13-10-2018 CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 Gene3D G3DSA:2.40.420.20 309 375 2.2E-88 T 13-10-2018 CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 72 298 3.7E-12 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 Gene3D G3DSA:2.40.30.170 60 308 2.2E-88 T 13-10-2018 CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 Gene3D G3DSA:2.40.50.100 71 218 2.2E-88 T 13-10-2018 CS348_18615 ec10f65446e2574072d40dc696ff57e7 408 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 376 4.5E-79 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 3.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 3.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 Pfam PF07883 Cupin domain 29 90 1.6E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 SMART SM00342 196 279 2.0E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 Pfam PF12833 Helix-turn-helix domain 202 281 3.3E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 SUPERFAMILY SSF46689 181 230 1.66E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 Gene3D G3DSA:2.60.120.10 3 97 1.8E-10 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 Gene3D G3DSA:1.10.10.60 233 289 1.1E-15 T 13-10-2018 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 Gene3D G3DSA:1.10.10.60 177 232 2.9E-11 T 13-10-2018 CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 SUPERFAMILY SSF51182 17 94 2.36E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_13305 03ec0498eb9a6b4397e1f6e19f1e5fe6 296 SUPERFAMILY SSF46689 232 284 3.81E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_19665 915934379ae763db2deacc41e7a823b2 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.015 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CS348_19665 915934379ae763db2deacc41e7a823b2 305 Gene3D G3DSA:3.30.1700.10 129 305 2.3E-74 T 13-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CS348_19665 915934379ae763db2deacc41e7a823b2 305 SUPERFAMILY SSF54211 134 278 2.96E-54 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_19665 915934379ae763db2deacc41e7a823b2 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 1.3E-108 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CS348_19665 915934379ae763db2deacc41e7a823b2 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 301 1.8E-163 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CS348_19665 915934379ae763db2deacc41e7a823b2 305 Gene3D G3DSA:3.30.230.20 1 128 7.9E-52 T 13-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CS348_19665 915934379ae763db2deacc41e7a823b2 305 SUPERFAMILY SSF54211 3 124 1.29E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Gene3D G3DSA:3.40.50.220 1 108 2.0E-42 T 13-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 SUPERFAMILY SSF55904 571 718 2.09E-47 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 705 1.3E-48 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 103 4.0E-24 T 13-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 551 1.4E-198 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Gene3D G3DSA:3.90.1150.10 421 600 1.1E-71 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 SUPERFAMILY SSF53383 109 567 4.66E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 SUPERFAMILY SSF52172 1 107 7.95E-36 T 13-10-2018 IPR011006 CheY-like superfamily CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 PIRSF PIRSF009393 1 719 8.1E-289 T 13-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Gene3D G3DSA:3.40.640.10 109 419 3.1E-83 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 Gene3D G3DSA:3.90.100.10 601 727 1.5E-43 T 13-10-2018 CS348_16755 5e98aa6baa5742abc314e2cbda894498 732 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 718 0.0 T 13-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 CS348_08610 d18e0a632d527cb37991c13127656451 285 Gene3D G3DSA:3.20.20.150 1 285 1.8E-113 T 13-10-2018 CS348_08610 d18e0a632d527cb37991c13127656451 285 SUPERFAMILY SSF51658 1 277 2.23E-103 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_08610 d18e0a632d527cb37991c13127656451 285 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 CS348_08610 d18e0a632d527cb37991c13127656451 285 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 2 276 6.1E-114 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CS348_08610 d18e0a632d527cb37991c13127656451 285 SMART SM00518 3 279 3.0E-139 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CS348_08610 d18e0a632d527cb37991c13127656451 285 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 CS348_08610 d18e0a632d527cb37991c13127656451 285 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 44.773 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 CS348_08610 d18e0a632d527cb37991c13127656451 285 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 CS348_08610 d18e0a632d527cb37991c13127656451 285 Pfam PF01261 Xylose isomerase-like TIM barrel 19 239 9.7E-41 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Gene3D G3DSA:3.40.50.300 563 780 1.7E-61 T 13-10-2018 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 SMART SM01086 782 875 2.8E-11 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 SUPERFAMILY SSF52540 193 527 9.94E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Gene3D G3DSA:1.10.1780.10 2 162 3.1E-37 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Gene3D G3DSA:3.40.50.300 378 557 4.9E-41 T 13-10-2018 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 659 677 2.3E-29 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 721 735 2.3E-29 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 614 632 2.3E-29 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 688 706 2.3E-29 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 SUPERFAMILY SSF52540 559 863 7.45E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 783 856 4.5E-11 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 236 368 4.2E-9 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 327 339 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Gene3D G3DSA:1.10.8.60 782 881 1.3E-11 T 13-10-2018 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 SMART SM00382 610 781 2.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 SMART SM00382 231 372 9.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 18 865 0.0 T 13-10-2018 IPR017729 Type VI secretion system, ATPase ClpV1 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 SUPERFAMILY SSF81923 19 128 2.55E-15 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Pfam PF07724 AAA domain (Cdc48 subfamily) 609 776 3.3E-37 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_18935 73b433582b3d84b0219900f0bf7bc2b8 887 Gene3D G3DSA:3.40.50.300 185 375 1.7E-62 T 13-10-2018 CS348_16610 9a444780862b17bf9afaa8d2423307cd 379 PIRSF PIRSF000267 2 378 2.9E-135 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_16610 9a444780862b17bf9afaa8d2423307cd 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 3.8E-111 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_16610 9a444780862b17bf9afaa8d2423307cd 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 1.0E-204 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 PIRSF PIRSF000463 6 728 6.7E-282 T 13-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 SUPERFAMILY SSF51011 625 726 4.92E-35 T 13-10-2018 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Gene3D G3DSA:2.60.40.1180 623 728 1.3E-41 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_01550 42452617004a24b62cd5ec268d88c74b 728 SUPERFAMILY SSF81296 117 223 7.17E-35 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Pfam PF00128 Alpha amylase, catalytic domain 273 347 9.0E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Gene3D G3DSA:2.60.40.10 3 221 3.1E-78 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Gene3D G3DSA:3.20.20.80 230 612 1.3E-176 T 13-10-2018 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 SUPERFAMILY SSF51445 230 621 1.95E-109 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_01550 42452617004a24b62cd5ec268d88c74b 728 SMART SM00642 247 596 7.1E-6 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 SUPERFAMILY SSF81296 16 115 2.6E-18 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 1.4E-24 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.559 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 0.0 T 13-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 CS348_01550 42452617004a24b62cd5ec268d88c74b 728 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 9.2E-23 T 13-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 CS348_17845 b21b7888161961a506c968064dc61a03 225 Pfam PF00005 ABC transporter 23 166 1.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_17845 b21b7888161961a506c968064dc61a03 225 Gene3D G3DSA:3.40.50.300 1 223 1.1E-57 T 13-10-2018 CS348_17845 b21b7888161961a506c968064dc61a03 225 SMART SM00382 32 214 2.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_17845 b21b7888161961a506c968064dc61a03 225 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_17845 b21b7888161961a506c968064dc61a03 225 SUPERFAMILY SSF52540 5 211 3.99E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 465 600 1.7E-24 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Pfam PF00696 Amino acid kinase family 12 284 2.6E-43 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 SUPERFAMILY SSF53633 12 299 5.11E-57 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 SUPERFAMILY SSF51735 457 630 8.31E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 15 453 2.6E-62 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 PIRSF PIRSF000727 12 810 2.7E-296 T 13-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Gene3D G3DSA:3.40.1160.10 15 298 3.7E-72 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 SUPERFAMILY SSF55347 608 791 6.28E-47 T 13-10-2018 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Gene3D G3DSA:1.20.120.1320 51 145 3.7E-72 T 13-10-2018 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 ProSitePatterns PS00324 Aspartokinase signature. 14 22 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Gene3D G3DSA:3.40.50.720 460 806 2.7E-105 T 13-10-2018 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 654 676 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Gene3D G3DSA:3.30.360.10 619 789 2.7E-105 T 13-10-2018 CS348_23080 494fbd7a8973f1144ca02e8df199f324 810 Pfam PF00742 Homoserine dehydrogenase 608 803 5.2E-44 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 SUPERFAMILY SSF53720 6 481 4.58E-177 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 Gene3D G3DSA:3.40.309.10 258 447 2.7E-193 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 2.3E-239 T 13-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 Gene3D G3DSA:3.40.605.10 25 472 2.7E-193 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_06130 01ab2f82ff44ed9b2f0f69afe23a49a4 482 Pfam PF00171 Aldehyde dehydrogenase family 19 477 1.0E-176 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_23485 794912c1a6b6530310747d8cc28751e5 166 Gene3D G3DSA:1.20.120.1490 40 150 5.1E-44 T 13-10-2018 CS348_23485 794912c1a6b6530310747d8cc28751e5 166 PIRSF PIRSF034445 2 146 2.2E-30 T 13-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 CS348_23485 794912c1a6b6530310747d8cc28751e5 166 Pfam PF07813 LTXXQ motif family protein 42 135 7.4E-21 T 13-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 SUPERFAMILY SSF52833 450 562 4.91E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 ProSitePatterns PS00194 Thioredoxin family active site. 474 492 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 Gene3D G3DSA:2.60.40.1250 18 155 5.4E-49 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 Pfam PF11412 Disulphide bond corrector protein DsbC 28 138 1.3E-33 T 13-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 Pfam PF13899 Thioredoxin-like 464 539 2.9E-14 T 13-10-2018 CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 SUPERFAMILY SSF74863 27 141 5.89E-40 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 566 40.274 T 13-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 Gene3D G3DSA:3.40.30.10 442 566 4.0E-38 T 13-10-2018 CS348_22000 904e7e7d165f499fa8b3b571959ed20a 567 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 174 379 7.8E-19 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 TIGRFAM TIGR00683 nanA: N-acetylneuraminate lyase 5 296 4.3E-161 T 13-10-2018 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581|Reactome: R-HSA-4085001 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 SUPERFAMILY SSF51569 5 291 7.64E-82 T 13-10-2018 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 Hamap MF_01237 N-acetylneuraminate lyase [nanA]. 5 294 51.446 T 13-10-2018 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581|Reactome: R-HSA-4085001 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 3.9E-21 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 3.9E-21 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 3.9E-21 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 3.9E-21 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 PIRSF PIRSF001365 1 297 6.6E-82 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 137 167 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 SMART SM01130 4 293 4.5E-87 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 41 58 - T 13-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 Gene3D G3DSA:3.20.20.70 4 297 3.0E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02530 0820d00fc2800ec7afb2fc8032da79c8 297 Pfam PF00701 Dihydrodipicolinate synthetase family 5 291 7.1E-107 T 13-10-2018 IPR002220 DapA-like GO:0016829 CS348_25440 a334e186643f4cef1f097f3793efaccf 133 Pfam PF06290 Plasmid SOS inhibition protein (PsiB) 12 123 1.7E-20 T 13-10-2018 IPR009385 Protein PsiB CS348_25440 a334e186643f4cef1f097f3793efaccf 133 Gene3D G3DSA:3.40.50.11880 5 133 3.9E-35 T 13-10-2018 IPR038131 Protein PsiB-like superfamily CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 Gene3D G3DSA:1.10.10.10 142 239 3.8E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 Gene3D G3DSA:3.40.50.2300 5 141 5.6E-35 T 13-10-2018 CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 SUPERFAMILY SSF46894 142 234 1.39E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 Pfam PF00072 Response regulator receiver domain 13 121 3.2E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 SMART SM00448 11 121 3.4E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 SUPERFAMILY SSF52172 6 138 2.28E-39 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 2.4E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_08995 649d75e0f85f831105b46ad40f5c3c52 240 SMART SM00862 156 232 1.4E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_00270 bc48d996c180633b61189e394e739ca9 247 Gene3D G3DSA:3.40.1410.10 103 246 2.2E-26 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_00270 bc48d996c180633b61189e394e739ca9 247 SMART SM00866 97 237 1.0E-20 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_00270 bc48d996c180633b61189e394e739ca9 247 SMART SM00345 16 75 5.7E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00270 bc48d996c180633b61189e394e739ca9 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 7.9E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00270 bc48d996c180633b61189e394e739ca9 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.3E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00270 bc48d996c180633b61189e394e739ca9 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.3E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_00270 bc48d996c180633b61189e394e739ca9 247 SUPERFAMILY SSF46785 5 79 5.05E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00270 bc48d996c180633b61189e394e739ca9 247 Gene3D G3DSA:1.10.10.10 10 80 8.8E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00270 bc48d996c180633b61189e394e739ca9 247 SUPERFAMILY SSF64288 63 243 3.61E-36 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_00270 bc48d996c180633b61189e394e739ca9 247 Pfam PF07702 UTRA domain 98 236 9.0E-25 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 Gene3D G3DSA:3.40.50.300 478 699 6.1E-69 T 13-10-2018 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 Gene3D G3DSA:1.20.1560.10 159 473 7.4E-56 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 SUPERFAMILY SSF90123 163 467 1.03E-53 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 SUPERFAMILY SSF52540 486 696 3.07E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 Pfam PF00664 ABC transporter transmembrane region 175 441 1.0E-43 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 Pfam PF00005 ABC transporter 507 655 1.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 Gene3D G3DSA:3.90.70.10 9 154 1.1E-40 T 13-10-2018 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 Pfam PF03412 Peptidase C39 family 18 146 8.5E-40 T 13-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 ProSitePatterns PS00211 ABC transporters family signature. 627 641 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_24635 f253bcc38ccb1e1957a21bb951ef9496 699 SMART SM00382 515 699 2.8E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 9.6E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 9.6E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 9.6E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 9.6E-40 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 Gene3D G3DSA:3.90.1170.10 1 136 1.3E-54 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 1.7E-46 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 SUPERFAMILY SSF54686 3 133 3.27E-54 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.894 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.4E-58 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02045 9ca18dc7b9b89f80a362850de52e64fc 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23375 52bfc654ae5bab5cf122f42dc8363b43 137 TIGRFAM TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family 2 136 1.7E-49 T 13-10-2018 IPR020000 Bacteriophage P2, LysB CS348_14325 46d983f43277debe94a0addb9697882d 436 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 41 436 6.4E-146 T 13-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 CS348_14325 46d983f43277debe94a0addb9697882d 436 Pfam PF12704 MacB-like periplasmic core domain 64 246 5.9E-13 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CS348_14325 46d983f43277debe94a0addb9697882d 436 Pfam PF02687 FtsX-like permease family 333 429 1.2E-12 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 34.524 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Pfam PF01225 Mur ligase family, catalytic domain 24 102 7.3E-12 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Gene3D G3DSA:3.40.1390.10 2 104 8.0E-36 T 13-10-2018 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Pfam PF08245 Mur ligase middle domain 114 318 7.8E-50 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 SUPERFAMILY SSF53623 105 338 2.22E-77 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Gene3D G3DSA:3.90.190.20 344 485 8.7E-58 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 SUPERFAMILY SSF53244 339 491 6.11E-52 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 SUPERFAMILY SSF63418 5 103 2.88E-22 T 13-10-2018 IPR035911 MurE/MurF, N-terminal CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 425 6.7E-26 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 Gene3D G3DSA:3.40.1190.10 105 342 1.5E-92 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19720 555d57eadaa4d4d04e1e4602382bdf21 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 491 1.6E-163 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CS348_06565 5dff870d162ed803943843df7d91100f 229 SMART SM00986 49 210 9.9E-42 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_06565 5dff870d162ed803943843df7d91100f 229 SUPERFAMILY SSF52141 5 221 5.45E-95 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_06565 5dff870d162ed803943843df7d91100f 229 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 7.4E-89 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_06565 5dff870d162ed803943843df7d91100f 229 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 13-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_06565 5dff870d162ed803943843df7d91100f 229 Gene3D G3DSA:3.40.470.10 1 229 2.6E-108 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_06565 5dff870d162ed803943843df7d91100f 229 SMART SM00987 49 210 9.9E-42 T 13-10-2018 CS348_06565 5dff870d162ed803943843df7d91100f 229 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 2.6E-27 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_06565 5dff870d162ed803943843df7d91100f 229 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.359 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 PIRSF PIRSF006107 1 714 0.0 T 13-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 SUPERFAMILY SSF75138 229 353 2.55E-25 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 SUPERFAMILY SSF52540 4 240 1.54E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Pfam PF13500 AAA domain 5 229 1.3E-49 T 13-10-2018 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 7.3E-128 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Gene3D G3DSA:3.40.50.10750 529 682 1.4E-135 T 13-10-2018 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Gene3D G3DSA:3.40.1390.20 225 365 1.1E-15 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 2.5E-137 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 SUPERFAMILY SSF53659 392 709 2.01E-94 T 13-10-2018 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Gene3D G3DSA:3.40.50.300 4 223 5.4E-13 T 13-10-2018 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Gene3D G3DSA:3.40.50.10950 398 709 1.4E-135 T 13-10-2018 CS348_07955 8aa216caed163a5e71b0ec0caa28f79a 714 Pfam PF07085 DRTGG domain 233 344 1.7E-29 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 7.7E-101 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 383 3.4E-24 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 SUPERFAMILY SSF69189 292 385 1.41E-23 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 SUPERFAMILY SSF56601 15 292 5.9E-75 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 5.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 5.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 5.7E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 Gene3D G3DSA:2.60.410.10 292 383 2.6E-27 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 Gene3D G3DSA:3.40.710.10 30 291 7.2E-90 T 13-10-2018 CS348_17040 2ad87a79612dcb770346e5cb74a322d1 403 SMART SM00936 292 383 1.1E-31 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 415 534 7.2E-8 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 553 32.546 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 PIRSF PIRSF004983 1 556 4.2E-183 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Pfam PF16582 Middle domain of thiamine pyrophosphate 185 388 6.8E-86 T 13-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 SUPERFAMILY SSF52518 7 174 4.44E-31 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 430 1.0E-138 T 13-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 135 4.1E-27 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Gene3D G3DSA:3.40.50.970 347 556 2.2E-64 T 13-10-2018 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Gene3D G3DSA:3.40.50.1220 212 337 4.0E-49 T 13-10-2018 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 Gene3D G3DSA:3.40.50.970 1 196 1.6E-64 T 13-10-2018 CS348_08100 40244943a1b5ffeb5be477899924fbf9 556 SUPERFAMILY SSF52518 365 552 2.28E-33 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_09790 79c404a5a4ec22e46142b2b237f7bbb9 156 Gene3D G3DSA:3.40.960.10 21 156 1.0E-48 T 13-10-2018 CS348_09790 79c404a5a4ec22e46142b2b237f7bbb9 156 Pfam PF03852 DNA mismatch endonuclease Vsr 2 74 2.7E-34 T 13-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 CS348_09790 79c404a5a4ec22e46142b2b237f7bbb9 156 TIGRFAM TIGR00632 vsr: DNA mismatch endonuclease Vsr 1 118 2.5E-49 T 13-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 CS348_09790 79c404a5a4ec22e46142b2b237f7bbb9 156 SUPERFAMILY SSF52980 2 153 2.14E-50 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_09790 79c404a5a4ec22e46142b2b237f7bbb9 156 PIRSF PIRSF018267 1 149 1.5E-48 T 13-10-2018 IPR004603 DNA mismatch endonuclease vsr GO:0004519|GO:0006298 CS348_23705 0d9f9da824b114cb1a84ac8ee82d7c90 460 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 69 96 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 CS348_23705 0d9f9da824b114cb1a84ac8ee82d7c90 460 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 18 456 2.6E-158 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_23705 0d9f9da824b114cb1a84ac8ee82d7c90 460 SUPERFAMILY SSF103473 20 444 1.12E-30 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_23705 0d9f9da824b114cb1a84ac8ee82d7c90 460 Pfam PF13347 MFS/sugar transport protein 20 443 4.2E-83 T 13-10-2018 CS348_23705 0d9f9da824b114cb1a84ac8ee82d7c90 460 Gene3D G3DSA:1.20.1250.20 18 437 5.9E-18 T 13-10-2018 CS348_03405 6f9dc78690dcf1630595375aea117b6d 473 Gene3D G3DSA:1.20.58.1690 170 245 1.4E-14 T 13-10-2018 IPR038434 YARHG domain superfamily CS348_03405 6f9dc78690dcf1630595375aea117b6d 473 SMART SM01324 162 247 1.2E-24 T 13-10-2018 IPR025582 YARHG domain CS348_03405 6f9dc78690dcf1630595375aea117b6d 473 Pfam PF14673 Domain of unknown function (DUF4459) 1 159 1.4E-110 T 13-10-2018 IPR028007 Domain of unknown function DUF4459 CS348_03405 6f9dc78690dcf1630595375aea117b6d 473 Pfam PF13308 YARHG domain 183 244 1.3E-14 T 13-10-2018 IPR025582 YARHG domain CS348_03405 6f9dc78690dcf1630595375aea117b6d 473 Pfam PF14485 Domain of unknown function (DUF4431) 414 455 2.0E-12 T 13-10-2018 IPR027826 Domain of unknown function DUF4431 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 PIRSF PIRSF005751 1 351 3.7E-135 T 13-10-2018 IPR005216 Citrate lyase ligase GO:0008771 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 147 204 5.6E-11 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 Pfam PF08218 Citrate lyase ligase C-terminal domain 147 333 1.6E-79 T 13-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 Gene3D G3DSA:3.40.50.620 144 326 1.2E-17 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 SUPERFAMILY SSF52374 145 334 2.66E-23 T 13-10-2018 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 SUPERFAMILY SSF55729 39 118 1.98E-8 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 Gene3D G3DSA:3.40.630.30 8 120 1.6E-6 T 13-10-2018 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 7 338 1.0E-164 T 13-10-2018 IPR005216 Citrate lyase ligase GO:0008771 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 121 338 3.0E-128 T 13-10-2018 CS348_17115 08cc71bb81e3b660b695275893b2e7aa 358 SMART SM00764 147 333 1.1E-135 T 13-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 SUPERFAMILY SSF101904 533 850 1.96E-112 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.729 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Gene3D G3DSA:3.30.1360.40 236 333 7.5E-238 T 13-10-2018 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.7E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 737 5.0E-16 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 9.2E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 744 789 3.9E-14 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 5.8E-13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 6.5E-11 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Gene3D G3DSA:3.90.199.10 33 521 7.5E-238 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 13-10-2018 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 SUPERFAMILY SSF56719 30 521 6.15E-184 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 1.2E-154 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 SMART SM00434 11 499 0.0 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Gene3D G3DSA:1.10.268.10 370 493 7.5E-238 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CS348_08300 780a957ac52b54c866ecebcb17d90e44 878 Gene3D G3DSA:2.120.10.90 535 841 8.2E-132 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CS348_06350 9e2dffd19a1cc38ead2cb65c854d67fc 469 Pfam PF02321 Outer membrane efflux protein 62 243 2.5E-28 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_06350 9e2dffd19a1cc38ead2cb65c854d67fc 469 Pfam PF02321 Outer membrane efflux protein 273 446 5.7E-22 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_06350 9e2dffd19a1cc38ead2cb65c854d67fc 469 SUPERFAMILY SSF56954 53 451 3.66E-68 T 13-10-2018 CS348_06350 9e2dffd19a1cc38ead2cb65c854d67fc 469 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 59 464 3.3E-129 T 13-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 CS348_06350 9e2dffd19a1cc38ead2cb65c854d67fc 469 Gene3D G3DSA:1.20.1600.10 61 464 2.4E-65 T 13-10-2018 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 19 377 7.3E-99 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 Pfam PF01566 Natural resistance-associated macrophage protein 38 383 1.8E-126 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 1.9E-29 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 1.9E-29 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 1.9E-29 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 1.9E-29 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 1.9E-29 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_07535 42a03e22539031b3820e9b1ac5a25569 413 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 409 38.634 T 13-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 12 167 6.4E-40 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 188 337 1.4E-18 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 Gene3D G3DSA:3.30.2340.10 167 301 4.1E-121 T 13-10-2018 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 Gene3D G3DSA:3.30.2350.20 17 337 4.1E-121 T 13-10-2018 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 5 342 28.304 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 SUPERFAMILY SSF55120 3 339 1.22E-101 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 3 341 2.5E-95 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05390 d6b2b1368d03bff67a58e7fb00f0acf9 349 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 77 90 - T 13-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 CS348_11115 dfd18a48296e5bcc34406040042340e0 582 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 126 147 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CS348_11115 dfd18a48296e5bcc34406040042340e0 582 Gene3D G3DSA:3.90.76.10 110 233 4.1E-212 T 13-10-2018 CS348_11115 dfd18a48296e5bcc34406040042340e0 582 Gene3D G3DSA:3.40.190.10 81 563 4.1E-212 T 13-10-2018 CS348_11115 dfd18a48296e5bcc34406040042340e0 582 Gene3D G3DSA:3.10.105.10 336 551 4.1E-212 T 13-10-2018 CS348_11115 dfd18a48296e5bcc34406040042340e0 582 PIRSF PIRSF002741 39 581 9.7E-117 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_11115 dfd18a48296e5bcc34406040042340e0 582 SUPERFAMILY SSF53850 74 564 7.61E-150 T 13-10-2018 CS348_11115 dfd18a48296e5bcc34406040042340e0 582 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 121 502 3.5E-92 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 SMART SM00345 36 95 5.8E-23 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 SMART SM00895 123 247 5.1E-18 T 13-10-2018 IPR011711 GntR, C-terminal CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 Pfam PF00392 Bacterial regulatory proteins, gntR family 32 95 1.3E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 SUPERFAMILY SSF46785 28 99 2.61E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 SUPERFAMILY SSF48008 120 252 7.59E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 Gene3D G3DSA:1.10.10.10 27 98 1.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 69 85 5.6E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 69 5.6E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 Gene3D G3DSA:1.20.120.530 118 256 5.3E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 Pfam PF07729 FCD domain 125 246 6.5E-21 T 13-10-2018 IPR011711 GntR, C-terminal CS348_02525 bda7b0fe24d8f65dafa93876b282ec88 263 Hamap MF_01236 HTH-type transcriptional repressor NanR [nanR]. 4 263 61.539 T 13-10-2018 IPR023730 HTH-type transcriptional repressor NanR CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 Gene3D G3DSA:1.25.20.10 40 402 3.9E-129 T 13-10-2018 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 Gene3D G3DSA:1.10.530.10 485 657 5.0E-56 T 13-10-2018 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 Pfam PF01464 Transglycosylase SLT domain 496 607 2.6E-33 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 Gene3D G3DSA:1.10.1240.20 415 484 1.7E-30 T 13-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 SUPERFAMILY SSF48435 40 489 3.53E-136 T 13-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 513 541 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 Pfam PF14718 Soluble lytic murein transglycosylase L domain 419 484 2.9E-23 T 13-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 CS348_20455 d32ed2bdd98550f6eec904e351ae0156 657 SUPERFAMILY SSF53955 491 653 9.5E-51 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_19835 6a43d9a545210214b3e5e8d8e55c21ae 231 SUPERFAMILY SSF53639 1 223 1.0E-71 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_19835 6a43d9a545210214b3e5e8d8e55c21ae 231 SMART SM01007 7 198 2.5E-72 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_19835 6a43d9a545210214b3e5e8d8e55c21ae 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 2.6E-134 T 13-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 CS348_19835 6a43d9a545210214b3e5e8d8e55c21ae 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 1.9E-49 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_19835 6a43d9a545210214b3e5e8d8e55c21ae 231 Hamap MF_00989 L-ribulose-5-phosphate 4-epimerase [araD]. 1 231 74.491 T 13-10-2018 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD GO:0008742|GO:0019569 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 CS348_19835 6a43d9a545210214b3e5e8d8e55c21ae 231 Gene3D G3DSA:3.40.225.10 1 231 1.3E-68 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_11615 70f670345bdc87795be12a79b6b40470 112 SUPERFAMILY SSF54909 5 96 8.05E-16 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_11615 70f670345bdc87795be12a79b6b40470 112 Gene3D G3DSA:3.30.70.100 3 93 5.6E-12 T 13-10-2018 CS348_07035 2cf07889e418eb2bd1f2827840727f51 179 ProDom PD095266 MEMBRANE YFGI EXPORTED 1 179 1.0E-52 T 13-10-2018 IPR020231 Uncharacterised protein family, YfgI CS348_07035 2cf07889e418eb2bd1f2827840727f51 179 Pfam PF17358 Family of unknown function (DUF5384) 34 178 2.0E-49 T 13-10-2018 IPR020231 Uncharacterised protein family, YfgI CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 54 9.9E-19 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 SUPERFAMILY SSF55129 3 59 5.1E-21 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 13-10-2018 IPR018038 Ribosomal protein L30, conserved site CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 PIRSF PIRSF002211 1 59 2.8E-29 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 5.0E-28 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 21.935 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02100 4feffea74a7b86a96c498c445aa4994e 59 Gene3D G3DSA:3.30.1390.20 1 59 3.1E-27 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 Gene3D G3DSA:1.10.287.1050 1 82 4.5E-27 T 13-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 PIRSF PIRSF002096 1 133 2.2E-53 T 13-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 SUPERFAMILY SSF81273 91 133 2.28E-11 T 13-10-2018 CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 Gene3D G3DSA:4.10.430.10 90 133 1.7E-23 T 13-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 SUPERFAMILY SSF81273 4 58 2.35E-17 T 13-10-2018 CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 Pfam PF00816 H-NS histone family 41 127 1.8E-20 T 13-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 CS348_06080 1c47fbf39d8c9a455f3d551e09ed25a0 133 SMART SM00528 86 133 2.2E-25 T 13-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 CS348_14495 c84b53064febe9c5308a41e80b4cc7a3 194 PIRSF PIRSF006305 1 193 1.3E-44 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_14495 c84b53064febe9c5308a41e80b4cc7a3 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 185 4.2E-68 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_14495 c84b53064febe9c5308a41e80b4cc7a3 194 SUPERFAMILY SSF52972 1 185 1.05E-61 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_14495 c84b53064febe9c5308a41e80b4cc7a3 194 Gene3D G3DSA:3.90.950.10 2 194 4.0E-68 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_14495 c84b53064febe9c5308a41e80b4cc7a3 194 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 31.731 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_14495 c84b53064febe9c5308a41e80b4cc7a3 194 Pfam PF02545 Maf-like protein 3 186 2.9E-47 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CS348_08015 5f82f0b2756e17051d39f5d6d0498363 220 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 177 42.572 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08015 5f82f0b2756e17051d39f5d6d0498363 220 Gene3D G3DSA:3.40.50.12280 20 188 7.6E-72 T 13-10-2018 CS348_08015 5f82f0b2756e17051d39f5d6d0498363 220 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 64 170 3.5E-22 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08015 5f82f0b2756e17051d39f5d6d0498363 220 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 37 178 1.2E-70 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08015 5f82f0b2756e17051d39f5d6d0498363 220 SUPERFAMILY SSF56770 35 185 2.62E-65 T 13-10-2018 CS348_08015 5f82f0b2756e17051d39f5d6d0498363 220 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 144 160 - T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_07460 3d7cca99eefc0f4c2e65010e216618dc 277 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 27 274 1.3E-155 T 13-10-2018 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 CS348_07460 3d7cca99eefc0f4c2e65010e216618dc 277 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 27 272 2.3E-108 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CS348_07460 3d7cca99eefc0f4c2e65010e216618dc 277 SUPERFAMILY SSF53167 8 276 4.31E-85 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CS348_07460 3d7cca99eefc0f4c2e65010e216618dc 277 Gene3D G3DSA:3.40.50.1580 2 276 2.2E-104 T 13-10-2018 CS348_07460 3d7cca99eefc0f4c2e65010e216618dc 277 Pfam PF01048 Phosphorylase superfamily 27 273 3.3E-43 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CS348_07460 3d7cca99eefc0f4c2e65010e216618dc 277 PIRSF PIRSF000477 2 276 1.1E-114 T 13-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 CS348_13060 fec41d7eb8709c6072072e3dfb17d0b2 144 SMART SM00028 92 125 34.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_13060 fec41d7eb8709c6072072e3dfb17d0b2 144 SMART SM00028 58 91 3.4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_13060 fec41d7eb8709c6072072e3dfb17d0b2 144 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 15 142 2.0E-42 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_13060 fec41d7eb8709c6072072e3dfb17d0b2 144 Gene3D G3DSA:1.25.40.10 12 144 6.9E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_13060 fec41d7eb8709c6072072e3dfb17d0b2 144 SUPERFAMILY SSF48452 23 125 5.06E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_12600 137f3d218c6512572fa92457fa6970b1 406 Pfam PF00480 ROK family 87 389 3.7E-55 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_12600 137f3d218c6512572fa92457fa6970b1 406 SUPERFAMILY SSF53067 86 391 1.35E-46 T 13-10-2018 CS348_12600 137f3d218c6512572fa92457fa6970b1 406 Gene3D G3DSA:1.10.10.10 1 82 5.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12600 137f3d218c6512572fa92457fa6970b1 406 Gene3D G3DSA:3.30.420.40 91 383 8.0E-99 T 13-10-2018 CS348_12600 137f3d218c6512572fa92457fa6970b1 406 SUPERFAMILY SSF46785 12 77 1.48E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12600 137f3d218c6512572fa92457fa6970b1 406 Gene3D G3DSA:3.30.420.40 210 378 8.0E-99 T 13-10-2018 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 2.7E-87 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 SMART SM00363 96 160 8.2E-21 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 SUPERFAMILY SSF55174 3 206 2.09E-73 T 13-10-2018 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 1.7E-32 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 Gene3D G3DSA:1.10.1050.10 1 102 1.3E-45 T 13-10-2018 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 Gene3D G3DSA:3.10.290.10 103 191 1.2E-37 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 Pfam PF01479 S4 domain 97 143 7.3E-19 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.37 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CS348_02130 80651f80fa5f50ccf533ac137a42bee0 206 SMART SM01390 3 95 1.3E-49 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 Gene3D G3DSA:1.10.530.10 155 295 2.4E-46 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 SMART SM00047 145 309 5.4E-63 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 174 192 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 53 73 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 28 51 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 74 96 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 216 237 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 298 315 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 194 215 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 260 279 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 6 26 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 113 138 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 280 298 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 238 259 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 PRINTS PR01002 Flagellar protein FlgJ signature 150 173 4.4E-179 T 13-10-2018 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 298 8.0E-121 T 13-10-2018 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 Pfam PF10135 Rod binding protein 50 97 4.8E-18 T 13-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 165 298 4.1E-20 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 CS348_14535 4d8020ff52ec8c95e4c7cd8d8982b26f 316 Gene3D G3DSA:2.10.70.40 189 241 2.4E-46 T 13-10-2018 CS348_09455 3935eb408dc1ad5da5ae83b91017b3eb 173 Pfam PF02287 Dehydratase small subunit 39 170 2.8E-62 T 13-10-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 CS348_09455 3935eb408dc1ad5da5ae83b91017b3eb 173 SUPERFAMILY SSF47148 39 173 6.67E-64 T 13-10-2018 IPR036091 Propanediol/glycerol dehydratase, small subunit superfamily KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 CS348_09455 3935eb408dc1ad5da5ae83b91017b3eb 173 Gene3D G3DSA:1.10.1510.20 81 173 1.6E-44 T 13-10-2018 IPR036091 Propanediol/glycerol dehydratase, small subunit superfamily KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 CS348_09455 3935eb408dc1ad5da5ae83b91017b3eb 173 PIRSF PIRSF018505 1 173 2.1E-79 T 13-10-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 CS348_25645 c4eed2dbccf9a556556dc293f1173a49 222 Pfam PF02677 Uncharacterized BCR, COG1636 20 194 4.5E-64 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 CS348_25645 c4eed2dbccf9a556556dc293f1173a49 222 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 20 196 32.911 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 CS348_22535 4ed2230fd2c9368bfc635b18532ed0d6 305 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 76 209 6.9E-51 T 13-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 Pfam PF08411 Exonuclease C-terminal 213 473 5.5E-103 T 13-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 SUPERFAMILY SSF53098 10 475 2.87E-135 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 Pfam PF00929 Exonuclease 14 189 2.9E-31 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 Gene3D G3DSA:3.30.420.10 3 202 4.9E-76 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 SMART SM00479 11 204 0.0017 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 Gene3D G3DSA:1.20.1280.70 360 421 1.1E-27 T 13-10-2018 CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 Gene3D G3DSA:2.30.30.450 215 354 3.9E-60 T 13-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily CS348_09320 1eeaf09d48531a508f63aabe448b1acd 476 PIRSF PIRSF000977 4 476 1.8E-201 T 13-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 CS348_13615 3c94850e985a569ecceb59e59effb619 93 Pfam PF04606 Ogr/Delta-like zinc finger 4 47 1.1E-11 T 13-10-2018 IPR007684 Zinc finger, Ogr/Delta-type CS348_10885 4630e18a6c2279b23b384161a6b49710 597 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 54 79 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CS348_10885 4630e18a6c2279b23b384161a6b49710 597 Pfam PF00374 Nickel-dependent hydrogenase 54 582 7.7E-220 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CS348_10885 4630e18a6c2279b23b384161a6b49710 597 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 573 582 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CS348_10885 4630e18a6c2279b23b384161a6b49710 597 SUPERFAMILY SSF56762 12 582 2.88E-166 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_10885 4630e18a6c2279b23b384161a6b49710 597 Gene3D G3DSA:1.10.645.10 1 582 5.0E-274 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.408 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 SMART SM00859 3 123 3.9E-23 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 3.5E-223 T 13-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 Gene3D G3DSA:3.40.50.720 4 357 6.1E-151 T 13-10-2018 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 PIRSF PIRSF000148 1 368 9.9E-72 T 13-10-2018 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 SUPERFAMILY SSF55347 135 355 2.47E-78 T 13-10-2018 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 3.8E-23 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 SUPERFAMILY SSF51735 1 148 1.23E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 Gene3D G3DSA:3.30.360.10 136 351 6.1E-151 T 13-10-2018 CS348_01545 e2fe9d40f2dd725bb66b7d59d5a1df68 368 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 145 354 4.3E-60 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_08285 52518e88d4f3b175ca9e235e5252c834 441 PIRSF PIRSF002808 2 439 1.2E-36 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_08285 52518e88d4f3b175ca9e235e5252c834 441 SUPERFAMILY SSF103473 11 430 8.76E-85 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_08285 52518e88d4f3b175ca9e235e5252c834 441 Gene3D G3DSA:1.20.1250.20 10 213 1.6E-48 T 13-10-2018 CS348_08285 52518e88d4f3b175ca9e235e5252c834 441 Pfam PF07690 Major Facilitator Superfamily 24 388 4.2E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08285 52518e88d4f3b175ca9e235e5252c834 441 Gene3D G3DSA:1.20.1250.20 236 440 1.7E-25 T 13-10-2018 CS348_07615 24e4f641b9bb351ffbc1abe77a6ad66f 306 PIRSF PIRSF026649 3 305 9.7E-93 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_07615 24e4f641b9bb351ffbc1abe77a6ad66f 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 305 49.922 T 13-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 CS348_07615 24e4f641b9bb351ffbc1abe77a6ad66f 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 296 3.0E-112 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_07615 24e4f641b9bb351ffbc1abe77a6ad66f 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 305 1.3E-138 T 13-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 CS348_07615 24e4f641b9bb351ffbc1abe77a6ad66f 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 305 69.804 T 13-10-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 CS348_25520 3c27592e42e7a441e7e24b904f93cbe3 323 Pfam PF06406 StbA protein 3 316 7.1E-114 T 13-10-2018 IPR009440 Plasmid segregation protein ParM/StbA CS348_25520 3c27592e42e7a441e7e24b904f93cbe3 323 Gene3D G3DSA:3.30.420.40 4 164 1.0E-93 T 13-10-2018 CS348_25520 3c27592e42e7a441e7e24b904f93cbe3 323 SUPERFAMILY SSF53067 4 155 5.51E-46 T 13-10-2018 CS348_25520 3c27592e42e7a441e7e24b904f93cbe3 323 SUPERFAMILY SSF53067 165 318 1.42E-15 T 13-10-2018 CS348_25520 3c27592e42e7a441e7e24b904f93cbe3 323 Gene3D G3DSA:3.30.420.40 165 290 1.0E-93 T 13-10-2018 CS348_17310 a43f830e3755ba6e84e68f819023d00c 72 SMART SM00923 5 55 4.1E-23 T 13-10-2018 IPR005153 MbtH-like domain CS348_17310 a43f830e3755ba6e84e68f819023d00c 72 Pfam PF03621 MbtH-like protein 4 54 2.7E-21 T 13-10-2018 IPR005153 MbtH-like domain CS348_17310 a43f830e3755ba6e84e68f819023d00c 72 Gene3D G3DSA:3.90.820.10 1 72 6.6E-28 T 13-10-2018 CS348_17310 a43f830e3755ba6e84e68f819023d00c 72 SUPERFAMILY SSF160582 3 69 3.79E-24 T 13-10-2018 IPR038020 MbtH-like domain superfamily CS348_02695 07fa44b7a4bfad291452c405a712a853 84 SUPERFAMILY SSF82657 2 82 2.75E-28 T 13-10-2018 IPR036065 BolA-like superfamily CS348_02695 07fa44b7a4bfad291452c405a712a853 84 Pfam PF01722 BolA-like protein 17 74 5.7E-14 T 13-10-2018 IPR002634 BolA protein CS348_02695 07fa44b7a4bfad291452c405a712a853 84 Gene3D G3DSA:3.30.300.90 1 84 2.8E-38 T 13-10-2018 CS348_02695 07fa44b7a4bfad291452c405a712a853 84 PIRSF PIRSF003113 1 83 7.4E-21 T 13-10-2018 IPR002634 BolA protein CS348_18415 633203666bcc2dd6ee8a85fbaee83fe0 225 Gene3D G3DSA:3.40.50.12500 137 225 3.6E-5 T 13-10-2018 CS348_18415 633203666bcc2dd6ee8a85fbaee83fe0 225 Pfam PF07302 AroM protein 5 224 9.1E-72 T 13-10-2018 IPR010843 Uncharacterised protein family AroM CS348_18415 633203666bcc2dd6ee8a85fbaee83fe0 225 ProDom PD037589 AROM ARO OPERON REGULATED BY AROR BIOSYNTHESIS TRANSCRIPTION AMINO AROMATIC 5 223 4.0E-113 T 13-10-2018 IPR010843 Uncharacterised protein family AroM CS348_18680 95de6c58dc5e22b5d34984c66f18eef4 123 Gene3D G3DSA:1.10.10.10 19 114 4.8E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18680 95de6c58dc5e22b5d34984c66f18eef4 123 SUPERFAMILY SSF46894 20 107 1.56E-7 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 Gene3D G3DSA:3.40.190.10 171 250 6.6E-7 T 13-10-2018 CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 SUPERFAMILY SSF46785 1 87 7.55E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 1.5E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 SUPERFAMILY SSF53850 92 289 2.33E-25 T 13-10-2018 CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 Gene3D G3DSA:3.40.190.10 99 170 6.6E-7 T 13-10-2018 CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 Pfam PF03466 LysR substrate binding domain 99 287 7.2E-10 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_20160 fe665d9e3959116a81c2ff6e6743ae2a 299 Gene3D G3DSA:1.10.10.10 5 95 3.5E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 SUPERFAMILY SSF81340 9 398 5.36E-43 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 Pfam PF00654 Voltage gated chloride channel 88 364 2.2E-20 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 Gene3D G3DSA:1.10.3080.10 7 404 9.1E-24 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 Hamap MF_01115 Putative ion-transport protein YfeO [yfeO]. 9 410 39.713 T 13-10-2018 IPR022969 Chloride channel YfeO CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 PRINTS PR00762 Chloride channel signature 103 122 2.4E-7 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 PRINTS PR00762 Chloride channel signature 153 172 2.4E-7 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_07600 d94cb9b96ebe719871c730c95264d54d 411 PRINTS PR00762 Chloride channel signature 320 340 2.4E-7 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 SUPERFAMILY SSF54975 9 91 2.18E-21 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Gene3D G3DSA:3.30.420.360 373 738 3.4E-132 T 13-10-2018 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Gene3D G3DSA:3.90.870.30 104 355 1.6E-116 T 13-10-2018 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Pfam PF00708 Acylphosphatase 9 90 4.1E-17 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Gene3D G3DSA:3.30.420.350 475 726 3.4E-132 T 13-10-2018 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 11 738 1.5E-298 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Gene3D G3DSA:3.30.70.100 1 91 4.2E-31 T 13-10-2018 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Pfam PF07503 HypF finger 158 190 6.0E-15 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Pfam PF07503 HypF finger 108 141 5.9E-16 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 ProSitePatterns PS00150 Acylphosphatase signature 1. 13 23 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 PIRSF PIRSF006256 5 746 4.1E-272 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Gene3D G3DSA:3.30.110.120 252 365 1.6E-116 T 13-10-2018 CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 SUPERFAMILY SSF55821 175 379 4.27E-46 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CS348_05825 f6759a779e6abed25b4396f7c8e93b05 746 Pfam PF01300 Telomere recombination 210 373 8.1E-47 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:3.30.2090.10 188 278 7.1E-296 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 33.458 T 13-10-2018 IPR022831 Multidrug resistance protein MdtB CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82693 49 138 4.39E-23 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:1.20.1640.10 513 1019 7.1E-296 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:3.30.70.1430 567 662 7.1E-296 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82693 146 333 4.36E-22 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82866 299 498 3.53E-45 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:1.20.1640.10 19 512 7.1E-296 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:3.30.70.1440 663 861 7.1E-296 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82693 565 661 1.31E-16 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82714 192 275 6.15E-17 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 3.9E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82714 719 800 1.57E-16 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:3.30.2090.10 715 803 7.1E-296 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09015 d464841c08ee0f963c216906d1d41528 1040 SUPERFAMILY SSF82866 800 1024 8.11E-45 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:3.30.70.1430 49 811 7.1E-296 T 13-10-2018 CS348_09015 d464841c08ee0f963c216906d1d41528 1040 Gene3D G3DSA:3.30.70.1320 144 335 7.1E-296 T 13-10-2018 CS348_21585 e151e75f1463e6efd29f09efed61ea26 185 Gene3D G3DSA:3.40.30.10 21 180 4.7E-5 T 13-10-2018 CS348_21585 e151e75f1463e6efd29f09efed61ea26 185 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 4.0E-76 T 13-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ CS348_21585 e151e75f1463e6efd29f09efed61ea26 185 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 183 5.1E-102 T 13-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ CS348_14035 716d06e3318ac51fc66054a8f8adaebf 282 SUPERFAMILY SSF46955 4 94 5.19E-16 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_14035 716d06e3318ac51fc66054a8f8adaebf 282 SMART SM00422 4 72 5.5E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_14035 716d06e3318ac51fc66054a8f8adaebf 282 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 29 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_14035 716d06e3318ac51fc66054a8f8adaebf 282 Pfam PF13411 MerR HTH family regulatory protein 4 69 5.0E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_14035 716d06e3318ac51fc66054a8f8adaebf 282 Gene3D G3DSA:1.10.1660.10 2 103 2.5E-15 T 13-10-2018 CS348_12695 07d928a3ac9c69738a5e1e59f974db4b 568 SUPERFAMILY SSF51338 26 562 2.59E-23 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_12695 07d928a3ac9c69738a5e1e59f974db4b 568 Gene3D G3DSA:3.20.20.140 92 518 1.1E-77 T 13-10-2018 CS348_12695 07d928a3ac9c69738a5e1e59f974db4b 568 Pfam PF07969 Amidohydrolase family 80 559 2.6E-95 T 13-10-2018 IPR013108 Amidohydrolase 3 CS348_12695 07d928a3ac9c69738a5e1e59f974db4b 568 SUPERFAMILY SSF51556 91 518 1.63E-28 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_12695 07d928a3ac9c69738a5e1e59f974db4b 568 Gene3D G3DSA:2.30.40.10 39 533 1.1E-77 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_12695 07d928a3ac9c69738a5e1e59f974db4b 568 Gene3D G3DSA:3.10.310.70 111 231 1.1E-77 T 13-10-2018 CS348_00635 e785f2d570dca6d23dc94c17e6fb2643 232 Pfam PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) 1 229 2.2E-133 T 13-10-2018 IPR009330 Lipopolysaccharide core heptose(II) kinase CS348_00635 e785f2d570dca6d23dc94c17e6fb2643 232 SUPERFAMILY SSF56112 22 183 8.67E-10 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_06115 7aebbad239701910a24edf1550ecd679 225 SMART SM00895 80 212 1.0E-17 T 13-10-2018 IPR011711 GntR, C-terminal CS348_06115 7aebbad239701910a24edf1550ecd679 225 Gene3D G3DSA:1.10.10.10 11 67 7.1E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06115 7aebbad239701910a24edf1550ecd679 225 SUPERFAMILY SSF48008 77 218 1.26E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_06115 7aebbad239701910a24edf1550ecd679 225 Pfam PF07729 FCD domain 80 210 4.6E-21 T 13-10-2018 IPR011711 GntR, C-terminal CS348_06115 7aebbad239701910a24edf1550ecd679 225 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 70 1.1E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06115 7aebbad239701910a24edf1550ecd679 225 SMART SM00345 12 70 9.2E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06115 7aebbad239701910a24edf1550ecd679 225 SUPERFAMILY SSF46785 13 74 1.85E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_06115 7aebbad239701910a24edf1550ecd679 225 Gene3D G3DSA:1.20.120.530 68 213 8.0E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_09215 a2bb35120d422cf319f4ef3b4fd0813b 320 Gene3D G3DSA:3.90.25.10 167 311 5.5E-112 T 13-10-2018 CS348_09215 a2bb35120d422cf319f4ef3b4fd0813b 320 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 234 7.3E-74 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_09215 a2bb35120d422cf319f4ef3b4fd0813b 320 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 2 313 48.584 T 13-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 CS348_09215 a2bb35120d422cf319f4ef3b4fd0813b 320 SUPERFAMILY SSF51735 1 318 1.39E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09215 a2bb35120d422cf319f4ef3b4fd0813b 320 Gene3D G3DSA:3.40.50.720 5 302 5.5E-112 T 13-10-2018 CS348_23945 90aebda464d7a2bdc2e19d3a3b4abbc8 546 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 542 56.987 T 13-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 CS348_23945 90aebda464d7a2bdc2e19d3a3b4abbc8 546 SUPERFAMILY SSF56112 94 438 4.57E-50 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_23945 90aebda464d7a2bdc2e19d3a3b4abbc8 546 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 445 2.6E-186 T 13-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 CS348_23945 90aebda464d7a2bdc2e19d3a3b4abbc8 546 Pfam PF03109 ABC1 family 116 232 1.8E-34 T 13-10-2018 IPR004147 UbiB domain CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 Gene3D G3DSA:3.40.190.10 90 291 6.0E-30 T 13-10-2018 CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.6E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 Pfam PF03466 LysR substrate binding domain 89 293 4.0E-38 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 Gene3D G3DSA:1.10.10.10 1 84 2.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.8E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 Gene3D G3DSA:3.40.190.10 164 269 6.0E-30 T 13-10-2018 CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 SUPERFAMILY SSF46785 2 111 4.76E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_24265 6944c0459e95a4a22fc7dd63f7f3ffd7 295 SUPERFAMILY SSF53850 89 294 7.24E-33 T 13-10-2018 CS348_15990 184dfac476fd0cfa963b0014f5446e94 410 SUPERFAMILY SSF103473 12 403 6.67E-46 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_15990 184dfac476fd0cfa963b0014f5446e94 410 Pfam PF07690 Major Facilitator Superfamily 27 360 3.1E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_15990 184dfac476fd0cfa963b0014f5446e94 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 88 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_15990 184dfac476fd0cfa963b0014f5446e94 410 Gene3D G3DSA:1.20.1720.10 20 399 2.6E-60 T 13-10-2018 CS348_07315 4f879ea6a997270301ab51335f460a90 299 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 275 58.659 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 SUPERFAMILY SSF102886 4 298 2.62E-138 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PIRSF PIRSF000166 1 299 9.8E-129 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 164 188 - T 13-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 Gene3D G3DSA:3.40.1500.10 1 299 3.8E-137 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 Pfam PF01218 Coproporphyrinogen III oxidase 8 299 9.5E-133 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 123 145 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 260 286 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 29 45 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 46 67 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 160 189 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 232 259 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_07315 4f879ea6a997270301ab51335f460a90 299 PRINTS PR00073 Coprogen oxidase signature 88 112 2.7E-90 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CS348_24180 9e0435bb6714888749e572cf209de7f1 293 SUPERFAMILY SSF53448 1 286 3.6E-91 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_24180 9e0435bb6714888749e572cf209de7f1 293 Pfam PF00483 Nucleotidyl transferase 2 238 6.6E-71 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CS348_24180 9e0435bb6714888749e572cf209de7f1 293 Gene3D G3DSA:3.90.550.10 1 293 1.0E-88 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_24180 9e0435bb6714888749e572cf209de7f1 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 3.3E-159 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 Gene3D G3DSA:2.40.40.20 663 828 6.7E-52 T 13-10-2018 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 SUPERFAMILY SSF53706 57 674 1.57E-160 T 13-10-2018 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 Pfam PF00384 Molybdopterin oxidoreductase 99 572 2.1E-103 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 730 757 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 Gene3D G3DSA:3.40.228.10 191 655 1.8E-216 T 13-10-2018 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 56 835 0.0 T 13-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 Gene3D G3DSA:3.40.50.740 99 581 1.8E-216 T 13-10-2018 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 Gene3D G3DSA:3.90.55.10 97 629 1.8E-216 T 13-10-2018 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 TIGRFAM TIGR02164 torA: trimethylamine-N-oxide reductase TorA 8 835 0.0 T 13-10-2018 IPR011887 Trimethylamine-N-oxide reductase TorA GO:0030151|GO:0042597|GO:0050626 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 Pfam PF01568 Molydopterin dinucleotide binding domain 690 811 2.8E-25 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 515 532 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_00075 f2448a792b3a9c858491f5ef27215e3e 850 SUPERFAMILY SSF50692 684 832 1.27E-44 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_12800 70493e5720e606a37df7fb417e93a572 211 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 13-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 Gene3D G3DSA:1.10.340.30 21 132 3.6E-79 T 13-10-2018 CS348_12800 70493e5720e606a37df7fb417e93a572 211 SMART SM00478 38 185 1.5E-52 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 SUPERFAMILY SSF48150 3 208 6.91E-73 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 TIGRFAM TIGR01083 nth: endonuclease III 4 194 1.2E-89 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CS348_12800 70493e5720e606a37df7fb417e93a572 211 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.345 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CS348_12800 70493e5720e606a37df7fb417e93a572 211 PIRSF PIRSF001435 1 210 3.7E-50 T 13-10-2018 CS348_12800 70493e5720e606a37df7fb417e93a572 211 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 5.3E-19 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 4.3E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 Gene3D G3DSA:1.10.1670.10 11 203 3.6E-79 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 Pfam PF00633 Helix-hairpin-helix motif 100 127 2.1E-7 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CS348_12800 70493e5720e606a37df7fb417e93a572 211 SMART SM00525 186 206 1.6E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 1.3E-38 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 Gene3D G3DSA:2.40.50.140 1 84 1.0E-40 T 13-10-2018 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 5.3E-14 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 5.3E-14 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 5.3E-14 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 Pfam PF00366 Ribosomal protein S17 10 76 1.1E-34 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 5.0E-36 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 SUPERFAMILY SSF50249 5 82 6.85E-34 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02055 e2dd5c28e8d428c263d7dbecbddcac13 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.177 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 362 392 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 431 64.018 T 13-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 SUPERFAMILY SSF50249 2 66 1.03E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 Pfam PF01938 TRAM domain 11 66 2.9E-12 T 13-10-2018 IPR002792 TRAM domain CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 413 423 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 261 430 2.0E-25 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 Gene3D G3DSA:3.40.50.150 88 425 1.7E-129 T 13-10-2018 CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 Gene3D G3DSA:3.40.1350.30 128 263 1.7E-129 T 13-10-2018 CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 Gene3D G3DSA:2.40.50.140 1 87 7.0E-33 T 13-10-2018 CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 SUPERFAMILY SSF53335 76 430 7.07E-88 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_05225 6891fef0af58b29d37b2df527eafe22b 431 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 423 9.0E-154 T 13-10-2018 CS348_01515 0da0465edd0e9746030fe755bc64424d 345 Gene3D G3DSA:3.40.50.720 6 314 2.3E-101 T 13-10-2018 CS348_01515 0da0465edd0e9746030fe755bc64424d 345 Gene3D G3DSA:3.30.360.10 124 334 2.3E-101 T 13-10-2018 CS348_01515 0da0465edd0e9746030fe755bc64424d 345 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 239 1.0E-15 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 CS348_01515 0da0465edd0e9746030fe755bc64424d 345 SUPERFAMILY SSF55347 130 271 1.61E-21 T 13-10-2018 CS348_01515 0da0465edd0e9746030fe755bc64424d 345 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 120 1.7E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_01515 0da0465edd0e9746030fe755bc64424d 345 SUPERFAMILY SSF51735 3 158 9.86E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 SUPERFAMILY SSF53448 8 292 3.75E-73 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 8 479 7.8E-241 T 13-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 Gene3D G3DSA:3.90.550.10 6 356 5.2E-118 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 SUPERFAMILY SSF51182 195 479 3.61E-90 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 Pfam PF00483 Nucleotidyl transferase 10 295 7.9E-77 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 Pfam PF01050 Mannose-6-phosphate isomerase 325 475 1.5E-75 T 13-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 CS348_09135 14e2f25a8bb2dd5a7b929b9b562dc3ad 480 Gene3D G3DSA:2.60.120.10 357 469 3.0E-18 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_15160 1e25b118bbd942d1ec055d569fca267f 172 Pfam PF07977 FabA-like domain 29 158 8.2E-54 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_15160 1e25b118bbd942d1ec055d569fca267f 172 Gene3D G3DSA:3.10.129.10 2 172 8.6E-65 T 13-10-2018 CS348_15160 1e25b118bbd942d1ec055d569fca267f 172 SUPERFAMILY SSF54637 3 169 5.07E-55 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_15160 1e25b118bbd942d1ec055d569fca267f 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 172 1.1E-97 T 13-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_15160 1e25b118bbd942d1ec055d569fca267f 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.501 T 13-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 Pfam PF11941 Domain of unknown function (DUF3459) 458 547 3.1E-10 T 13-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 Pfam PF00128 Alpha amylase, catalytic domain 29 371 5.2E-126 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 Gene3D G3DSA:3.20.20.80 6 466 1.7E-192 T 13-10-2018 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 SUPERFAMILY SSF51445 4 471 7.4E-155 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 Gene3D G3DSA:3.90.400.10 106 174 1.7E-192 T 13-10-2018 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 SUPERFAMILY SSF51011 474 548 2.52E-19 T 13-10-2018 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 SMART SM00642 14 413 3.1E-155 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 6 548 2.1E-262 T 13-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 CS348_21340 e7cacf0292c91442e4222adbdbba9826 550 Gene3D G3DSA:2.60.40.1180 475 548 2.1E-18 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_08485 c04ff331522dd808fae6d268fac9179b 94 Pfam PF01386 Ribosomal L25p family 4 91 2.0E-24 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CS348_08485 c04ff331522dd808fae6d268fac9179b 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 28.699 T 13-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CS348_08485 c04ff331522dd808fae6d268fac9179b 94 Gene3D G3DSA:2.40.240.10 1 94 2.6E-36 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_08485 c04ff331522dd808fae6d268fac9179b 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 93 6.0E-46 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CS348_08485 c04ff331522dd808fae6d268fac9179b 94 SUPERFAMILY SSF50715 1 93 3.66E-31 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_08510 ff1baf8de131c3331d724417fa3348bd 114 Pfam PF13989 YejG-like protein 4 108 1.9E-50 T 13-10-2018 IPR020489 Uncharacterised protein family YejG CS348_08510 ff1baf8de131c3331d724417fa3348bd 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 114 3.0E-62 T 13-10-2018 IPR020489 Uncharacterised protein family YejG CS348_12295 da9dda60b2ebebea33d01d7581558458 357 Gene3D G3DSA:2.40.10.240 70 170 2.1E-70 T 13-10-2018 CS348_12295 da9dda60b2ebebea33d01d7581558458 357 Gene3D G3DSA:3.40.1780.10 28 352 2.1E-70 T 13-10-2018 CS348_12295 da9dda60b2ebebea33d01d7581558458 357 SUPERFAMILY SSF111337 1 353 1.31E-85 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CS348_12295 da9dda60b2ebebea33d01d7581558458 357 Pfam PF02547 Queuosine biosynthesis protein 4 352 5.5E-75 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CS348_06175 48fcc0d29668e366b0e4e982dd69cdaf 298 PIRSF PIRSF029703 1 296 1.1E-143 T 13-10-2018 IPR009977 Mig-14 CS348_06175 48fcc0d29668e366b0e4e982dd69cdaf 298 SUPERFAMILY SSF55729 133 288 4.95E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_06175 48fcc0d29668e366b0e4e982dd69cdaf 298 Pfam PF07395 Mig-14 35 295 1.3E-126 T 13-10-2018 IPR009977 Mig-14 CS348_07905 178bccfee0237297acecaefdb5c804e3 183 Gene3D G3DSA:3.60.21.10 1 183 2.2E-74 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_07905 178bccfee0237297acecaefdb5c804e3 183 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 120 144 - T 13-10-2018 IPR020935 Phosphodiesterase YfcE, conserved site CS348_07905 178bccfee0237297acecaefdb5c804e3 183 SUPERFAMILY SSF56300 1 163 5.47E-38 T 13-10-2018 CS348_07905 178bccfee0237297acecaefdb5c804e3 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 169 4.6E-43 T 13-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 CS348_07905 178bccfee0237297acecaefdb5c804e3 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 161 2.8E-24 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 13-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 SMART SM01232 129 221 4.5E-49 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 2.5E-10 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 Gene3D G3DSA:3.20.190.10 2 128 5.2E-45 T 13-10-2018 IPR035937 MutM-like, N-terminal CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 1.6E-106 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 SUPERFAMILY SSF57716 217 269 1.48E-17 T 13-10-2018 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 1.4E-31 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 SUPERFAMILY SSF46946 130 222 6.41E-31 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 Gene3D G3DSA:1.10.8.50 139 269 5.5E-51 T 13-10-2018 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 8.5E-31 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 44.298 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 SMART SM00898 2 115 1.1E-51 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CS348_00585 ae1b2ff6f805f4ddce87fdfa10d64bd5 269 SUPERFAMILY SSF81624 2 138 2.09E-43 T 13-10-2018 IPR035937 MutM-like, N-terminal CS348_20720 6672f890d35720f3953d76a72324861f 388 SMART SM00382 143 300 1.1E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20720 6672f890d35720f3953d76a72324861f 388 SUPERFAMILY SSF52540 130 322 2.43E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20720 6672f890d35720f3953d76a72324861f 388 Pfam PF13401 AAA domain 142 285 4.7E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20720 6672f890d35720f3953d76a72324861f 388 Gene3D G3DSA:3.40.50.300 129 296 1.1E-9 T 13-10-2018 CS348_20570 29871442ad26b2fdc5bdd47c3e4b1f62 46 Pfam PF06528 Phage P2 GpE 8 40 2.2E-5 T 13-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Hamap MF_00195 GTPase Der [der]. 2 461 39.687 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Pfam PF01926 50S ribosome-binding GTPase 205 322 7.7E-25 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Pfam PF01926 50S ribosome-binding GTPase 5 119 1.9E-28 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 PIRSF PIRSF006485 1 466 3.5E-180 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 458 3.8E-180 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 SUPERFAMILY SSF52540 137 464 1.43E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.1E-10 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.1E-10 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Gene3D G3DSA:3.40.50.300 199 375 4.2E-49 T 13-10-2018 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 378 458 8.0E-27 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 SUPERFAMILY SSF52540 4 164 1.13E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Gene3D G3DSA:3.30.300.20 378 460 4.6E-21 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 Gene3D G3DSA:3.40.50.300 2 159 1.2E-44 T 13-10-2018 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 1.2E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_06965 89f7aa5435a7d9e821ec9aec732309b1 490 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 203 368 5.3E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_02460 0059727370d2ef023353b44154e4eb47 80 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 80 34.208 T 13-10-2018 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3 CS348_02460 0059727370d2ef023353b44154e4eb47 80 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 5 77 3.4E-22 T 13-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 CS348_02460 0059727370d2ef023353b44154e4eb47 80 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 10 77 4.6E-16 T 13-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 CS348_01950 712e8ca95a5aec1b2742a0c341fdb52e 95 Pfam PF04077 DsrH like protein 11 91 1.0E-27 T 13-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 CS348_01950 712e8ca95a5aec1b2742a0c341fdb52e 95 SUPERFAMILY SSF75169 1 95 1.4E-28 T 13-10-2018 IPR027396 DsrEFH-like CS348_01950 712e8ca95a5aec1b2742a0c341fdb52e 95 Gene3D G3DSA:3.40.1260.10 1 95 1.3E-29 T 13-10-2018 IPR027396 DsrEFH-like CS348_01950 712e8ca95a5aec1b2742a0c341fdb52e 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 3.4E-31 T 13-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 CS348_01950 712e8ca95a5aec1b2742a0c341fdb52e 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 29.023 T 13-10-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 180 269 3.5E-25 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 Gene3D G3DSA:1.10.150.20 182 271 2.6E-29 T 13-10-2018 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 SMART SM00279 182 217 5.9E-10 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 SMART SM00475 23 270 2.1E-103 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 Gene3D G3DSA:3.40.50.1010 21 181 5.2E-56 T 13-10-2018 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 SUPERFAMILY SSF88723 24 179 3.02E-38 T 13-10-2018 IPR029060 PIN-like domain superfamily CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 25 172 3.3E-27 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 SUPERFAMILY SSF47807 180 263 1.64E-23 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CS348_05140 a439f297f55b3a2eaee98e1ee5e3642c 271 Hamap MF_01192 Flap endonuclease Xni [xni]. 22 271 45.384 T 13-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 SMART SM01240 7 473 0.0 T 13-10-2018 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 85.117 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 Gene3D G3DSA:3.20.20.70 1 486 1.1E-209 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 SUPERFAMILY SSF54631 94 203 1.52E-24 T 13-10-2018 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 2.2E-200 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 Pfam PF00571 CBS domain 95 140 1.9E-8 T 13-10-2018 IPR000644 CBS domain CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 Pfam PF00571 CBS domain 153 202 1.8E-4 T 13-10-2018 IPR000644 CBS domain CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 PIRSF PIRSF000130 1 487 4.7E-197 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 5.5E-162 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 SMART SM00116 96 144 7.3E-10 T 13-10-2018 IPR000644 CBS domain CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 SMART SM00116 158 206 2.2E-8 T 13-10-2018 IPR000644 CBS domain CS348_07010 a010555b6c67d0d5138c89fcf69fbaed 488 SUPERFAMILY SSF51412 1 477 1.7E-127 T 13-10-2018 CS348_19285 6b87afe53952efc5d58621addd7093be 232 Pfam PF01048 Phosphorylase superfamily 2 226 1.7E-47 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CS348_19285 6b87afe53952efc5d58621addd7093be 232 Gene3D G3DSA:3.40.50.1580 1 232 8.3E-74 T 13-10-2018 CS348_19285 6b87afe53952efc5d58621addd7093be 232 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 229 2.8E-134 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_19285 6b87afe53952efc5d58621addd7093be 232 SUPERFAMILY SSF53167 1 229 1.83E-74 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CS348_19285 6b87afe53952efc5d58621addd7093be 232 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 47.679 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_16715 80d1c171193b76a16bc86655969edd47 473 Pfam PF03441 FAD binding domain of DNA photolyase 273 467 2.3E-82 T 13-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 CS348_16715 80d1c171193b76a16bc86655969edd47 473 Gene3D G3DSA:1.25.40.80 132 287 1.8E-73 T 13-10-2018 CS348_16715 80d1c171193b76a16bc86655969edd47 473 SUPERFAMILY SSF48173 194 471 6.93E-105 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 CS348_16715 80d1c171193b76a16bc86655969edd47 473 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 343 362 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal CS348_16715 80d1c171193b76a16bc86655969edd47 473 Gene3D G3DSA:3.40.50.620 5 204 1.8E-73 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16715 80d1c171193b76a16bc86655969edd47 473 Pfam PF00875 DNA photolyase 5 170 9.0E-46 T 13-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 CS348_16715 80d1c171193b76a16bc86655969edd47 473 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 323 335 - T 13-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal CS348_16715 80d1c171193b76a16bc86655969edd47 473 PRINTS PR00147 DNA photolyase signature 143 159 1.8E-32 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CS348_16715 80d1c171193b76a16bc86655969edd47 473 PRINTS PR00147 DNA photolyase signature 343 361 1.8E-32 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CS348_16715 80d1c171193b76a16bc86655969edd47 473 PRINTS PR00147 DNA photolyase signature 323 339 1.8E-32 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CS348_16715 80d1c171193b76a16bc86655969edd47 473 PRINTS PR00147 DNA photolyase signature 382 396 1.8E-32 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CS348_16715 80d1c171193b76a16bc86655969edd47 473 Gene3D G3DSA:1.10.579.10 291 473 4.5E-87 T 13-10-2018 CS348_16715 80d1c171193b76a16bc86655969edd47 473 SUPERFAMILY SSF52425 3 198 1.83E-55 T 13-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 36 152 9.7E-26 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 SUPERFAMILY SSF143243 9 194 1.7E-46 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 Gene3D G3DSA:1.10.645.20 181 537 7.2E-114 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 SUPERFAMILY SSF56762 193 537 3.4E-110 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 216 227 - T 13-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 467 537 5.6E-11 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 296 464 2.0E-35 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 87 151 7.0E-25 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 Pfam PF00374 Nickel-dependent hydrogenase 218 286 1.9E-13 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CS348_05790 0945cb681cfbcda8282e2a6415062199 569 Gene3D G3DSA:3.30.460.80 2 134 1.4E-13 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_15665 0deaf8f4db0dc54cf948688f0bf17d69 134 Pfam PF05521 Phage head-tail joining protein 22 115 1.3E-15 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CS348_15665 0deaf8f4db0dc54cf948688f0bf17d69 134 Gene3D G3DSA:2.40.10.270 16 119 4.3E-10 T 13-10-2018 IPR038666 Bacteriophage SPP1, head-tail adaptor superfamily CS348_15665 0deaf8f4db0dc54cf948688f0bf17d69 134 TIGRFAM TIGR01563 gp16_SPP1: putative phage head-tail adaptor 22 116 4.2E-7 T 13-10-2018 IPR008767 Bacteriophage SPP1, head-tail adaptor CS348_00395 782aa689f3f004f15cf2f1007f0a96bb 159 Gene3D G3DSA:3.10.450.160 60 159 3.9E-46 T 13-10-2018 CS348_02050 b62c1dc417c418f6555850ca214a3656 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02050 b62c1dc417c418f6555850ca214a3656 63 Gene3D G3DSA:1.10.287.310 1 63 1.5E-30 T 13-10-2018 CS348_02050 b62c1dc417c418f6555850ca214a3656 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-22 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02050 b62c1dc417c418f6555850ca214a3656 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 7.4E-22 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02050 b62c1dc417c418f6555850ca214a3656 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.547 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02050 b62c1dc417c418f6555850ca214a3656 63 SUPERFAMILY SSF46561 1 61 1.2E-21 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_25755 d134ccf65e1db9c501540fa734e04967 346 SUPERFAMILY SSF53098 160 333 2.78E-40 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_25755 d134ccf65e1db9c501540fa734e04967 346 Gene3D G3DSA:3.30.420.10 172 337 1.9E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_25755 d134ccf65e1db9c501540fa734e04967 346 Pfam PF13551 Winged helix-turn helix 11 74 6.5E-20 T 13-10-2018 CS348_25755 d134ccf65e1db9c501540fa734e04967 346 Pfam PF00665 Integrase core domain 161 284 8.1E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CS348_25755 d134ccf65e1db9c501540fa734e04967 346 SUPERFAMILY SSF46689 19 114 2.15E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_24870 d134ccf65e1db9c501540fa734e04967 346 SUPERFAMILY SSF53098 160 333 2.78E-40 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_24870 d134ccf65e1db9c501540fa734e04967 346 Gene3D G3DSA:3.30.420.10 172 337 1.9E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_24870 d134ccf65e1db9c501540fa734e04967 346 Pfam PF13551 Winged helix-turn helix 11 74 6.5E-20 T 13-10-2018 CS348_24870 d134ccf65e1db9c501540fa734e04967 346 Pfam PF00665 Integrase core domain 161 284 8.1E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CS348_24870 d134ccf65e1db9c501540fa734e04967 346 SUPERFAMILY SSF46689 19 114 2.15E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05635 d134ccf65e1db9c501540fa734e04967 346 SUPERFAMILY SSF53098 160 333 2.78E-40 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_05635 d134ccf65e1db9c501540fa734e04967 346 Gene3D G3DSA:3.30.420.10 172 337 1.9E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_05635 d134ccf65e1db9c501540fa734e04967 346 Pfam PF13551 Winged helix-turn helix 11 74 6.5E-20 T 13-10-2018 CS348_05635 d134ccf65e1db9c501540fa734e04967 346 Pfam PF00665 Integrase core domain 161 284 8.1E-20 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CS348_05635 d134ccf65e1db9c501540fa734e04967 346 SUPERFAMILY SSF46689 19 114 2.15E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 SMART SM00925 125 257 3.0E-71 T 13-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 PIRSF PIRSF019422 145 365 4.4E-74 T 13-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 PIRSF PIRSF019422 1 147 1.4E-18 T 13-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 Gene3D G3DSA:2.40.240.50 125 262 1.3E-166 T 13-10-2018 CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 SUPERFAMILY SSF50685 25 353 7.32E-116 T 13-10-2018 IPR036908 RlpA-like domain superfamily CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 Pfam PF06725 3D domain 277 354 5.3E-25 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 Gene3D G3DSA:2.40.40.10 54 353 1.3E-166 T 13-10-2018 IPR036908 RlpA-like domain superfamily CS348_05060 c5770d380c1adadac562c35cbb89ce66 365 Pfam PF03562 MltA specific insert domain 93 257 3.9E-41 T 13-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 CS348_06590 3f533815e6de75282017cd5b1c69af37 245 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 11 245 54.934 T 13-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 CS348_06590 3f533815e6de75282017cd5b1c69af37 245 Gene3D G3DSA:3.40.50.150 9 241 3.1E-54 T 13-10-2018 CS348_06590 3f533815e6de75282017cd5b1c69af37 245 Pfam PF05175 Methyltransferase small domain 43 129 4.7E-12 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_06590 3f533815e6de75282017cd5b1c69af37 245 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 119 125 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_06590 3f533815e6de75282017cd5b1c69af37 245 SUPERFAMILY SSF53335 15 172 1.43E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_16500 3cc058785834530464f813d158bc61fb 350 PIRSF PIRSF001361 1 350 1.7E-165 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CS348_16500 3cc058785834530464f813d158bc61fb 350 SUPERFAMILY SSF51569 7 348 8.79E-141 T 13-10-2018 CS348_16500 3cc058785834530464f813d158bc61fb 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 3.9E-181 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CS348_16500 3cc058785834530464f813d158bc61fb 350 Gene3D G3DSA:3.20.20.70 1 350 2.4E-172 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_16500 3cc058785834530464f813d158bc61fb 350 Pfam PF00793 DAHP synthetase I family 38 338 6.1E-111 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_15625 f2680a517c1d61da085ce2f688119175 446 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 7 128 2.0E-66 T 13-10-2018 IPR009826 DNA circulation, N-terminal CS348_15625 f2680a517c1d61da085ce2f688119175 446 Pfam PF07157 DNA circularisation protein N-terminus 13 98 3.9E-37 T 13-10-2018 IPR009826 DNA circulation, N-terminal CS348_04760 4e444980d22aa32caa01dcf83327e878 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 298 66.312 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 298 3.7E-120 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 SUPERFAMILY SSF56349 106 296 5.0E-60 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 SUPERFAMILY SSF47823 4 100 1.41E-35 T 13-10-2018 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 Gene3D G3DSA:1.10.443.10 110 292 3.3E-82 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 Gene3D G3DSA:1.10.150.130 3 99 2.7E-23 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_04760 4e444980d22aa32caa01dcf83327e878 298 Pfam PF00589 Phage integrase family 113 284 2.7E-56 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 8.6E-25 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CS348_04760 4e444980d22aa32caa01dcf83327e878 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 298 58.841 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 2.6E-161 T 13-10-2018 IPR020823 Cell division protein FtsA CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 5.3E-30 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Gene3D G3DSA:3.90.640.10 235 300 8.7E-115 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 SMART SM00842 10 196 3.0E-96 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 420 29.547 T 13-10-2018 IPR020823 Cell division protein FtsA CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 SUPERFAMILY SSF53067 8 221 6.15E-61 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Gene3D G3DSA:3.30.420.40 13 379 8.7E-115 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Pfam PF14450 Cell division protein FtsA 207 381 8.9E-25 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 SUPERFAMILY SSF53067 198 384 1.91E-47 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Gene3D G3DSA:3.30.420.40 197 359 8.7E-115 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 Gene3D G3DSA:3.30.1490.110 87 169 8.7E-115 T 13-10-2018 CS348_19675 57df5feed18e2a4cbce944ca9b94acdc 420 PIRSF PIRSF003101 2 420 1.5E-152 T 13-10-2018 IPR020823 Cell division protein FtsA CS348_12345 28ae8c07db74b8bf586ce9399289ccaf 600 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 54 79 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CS348_12345 28ae8c07db74b8bf586ce9399289ccaf 600 Gene3D G3DSA:1.10.645.10 1 585 5.9E-289 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12345 28ae8c07db74b8bf586ce9399289ccaf 600 SUPERFAMILY SSF56762 12 585 1.24E-178 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12345 28ae8c07db74b8bf586ce9399289ccaf 600 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 576 585 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CS348_12345 28ae8c07db74b8bf586ce9399289ccaf 600 Pfam PF00374 Nickel-dependent hydrogenase 54 585 2.8E-231 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 SUPERFAMILY SSF103473 18 399 2.22E-55 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 Pfam PF07690 Major Facilitator Superfamily 25 366 9.0E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 31 47 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 289 310 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 115 136 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 88 112 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 350 373 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 145 167 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 PRINTS PR01035 Tetracycline resistance protein signature 261 281 1.7E-18 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_12310 ff134b75386c5b14ce54eebb063f7472 413 Gene3D G3DSA:1.20.1250.20 12 401 3.8E-56 T 13-10-2018 CS348_05655 62ae918b080e54717763280d7dc6a79e 392 Gene3D G3DSA:3.30.70.1780 166 223 8.7E-32 T 13-10-2018 CS348_05655 62ae918b080e54717763280d7dc6a79e 392 Gene3D G3DSA:3.30.70.1770 295 363 2.5E-30 T 13-10-2018 CS348_05655 62ae918b080e54717763280d7dc6a79e 392 Gene3D G3DSA:2.60.200.20 9 119 1.3E-44 T 13-10-2018 CS348_05655 62ae918b080e54717763280d7dc6a79e 392 Gene3D G3DSA:3.30.300.170 224 294 1.1E-33 T 13-10-2018 CS348_05655 62ae918b080e54717763280d7dc6a79e 392 TIGRFAM TIGR02554 PrgH: type III secretion apparatus protein PrgH/EprH 10 392 1.0E-199 T 13-10-2018 IPR013387 Type III secretion system, PrgH/EprH CS348_05655 62ae918b080e54717763280d7dc6a79e 392 Pfam PF09480 Type III secretion system protein PrgH-EprH (PrgH) 16 388 2.0E-138 T 13-10-2018 IPR019029 Type III secretion system, PrgH/EprH-like GO:0016021 CS348_14475 d77a26035e2fd16bc9ab2ca35aac6c38 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 6.9E-149 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CS348_14475 d77a26035e2fd16bc9ab2ca35aac6c38 317 SUPERFAMILY SSF53901 3 317 1.2E-70 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_14475 d77a26035e2fd16bc9ab2ca35aac6c38 317 Gene3D G3DSA:3.40.47.10 1 317 6.5E-125 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_14475 d77a26035e2fd16bc9ab2ca35aac6c38 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 1.1E-36 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CS348_14475 d77a26035e2fd16bc9ab2ca35aac6c38 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 1.8E-29 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CS348_14475 d77a26035e2fd16bc9ab2ca35aac6c38 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.05 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CS348_09395 1922654e1bbda02b7045005cd7863427 184 SMART SM00877 3 77 8.2E-24 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09395 1922654e1bbda02b7045005cd7863427 184 SMART SM00877 95 173 1.8E-26 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09395 1922654e1bbda02b7045005cd7863427 184 Pfam PF00936 BMC domain 4 76 4.6E-20 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09395 1922654e1bbda02b7045005cd7863427 184 Pfam PF00936 BMC domain 96 173 3.7E-21 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09395 1922654e1bbda02b7045005cd7863427 184 SUPERFAMILY SSF143414 95 181 1.83E-22 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09395 1922654e1bbda02b7045005cd7863427 184 Gene3D G3DSA:3.30.70.1710 80 184 9.8E-37 T 13-10-2018 CS348_09395 1922654e1bbda02b7045005cd7863427 184 PIRSF PIRSF034834 1 183 3.8E-83 T 13-10-2018 IPR011238 Polyhedral organelle shell protein PduT CS348_09395 1922654e1bbda02b7045005cd7863427 184 Gene3D G3DSA:3.30.70.1710 1 79 1.0E-29 T 13-10-2018 CS348_09395 1922654e1bbda02b7045005cd7863427 184 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 95 158 1.0E-29 T 13-10-2018 CS348_09395 1922654e1bbda02b7045005cd7863427 184 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 66 6.0E-30 T 13-10-2018 CS348_09395 1922654e1bbda02b7045005cd7863427 184 SUPERFAMILY SSF143414 3 93 1.83E-23 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 Gene3D G3DSA:3.30.565.10 308 460 1.0E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 SUPERFAMILY SSF47384 220 298 1.08E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 SMART SM00388 234 302 1.3E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 348 456 4.3E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 410 4.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 4.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 4.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 4.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 SMART SM00387 345 457 2.1E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 298 3.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 SUPERFAMILY SSF55874 306 455 7.2E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_06730 a0e0433e7f1ddf1d783a172ac7024d34 461 Gene3D G3DSA:1.10.287.130 178 298 1.1E-16 T 13-10-2018 CS348_20955 1538959c6150a577d4e0f4d74b1919c6 153 Pfam PF03830 PTS system sorbose subfamily IIB component 2 149 5.1E-48 T 13-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 CS348_20955 1538959c6150a577d4e0f4d74b1919c6 153 Gene3D G3DSA:3.40.35.10 1 153 8.5E-47 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_20955 1538959c6150a577d4e0f4d74b1919c6 153 SUPERFAMILY SSF52728 1 151 3.01E-47 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 123 192 5.2E-26 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 SUPERFAMILY SSF50331 123 192 9.48E-17 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 Gene3D G3DSA:2.40.50.100 182 252 6.3E-48 T 13-10-2018 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 113 2.4E-40 T 13-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 SUPERFAMILY SSF46785 2 106 8.71E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 SUPERFAMILY SSF50331 200 259 1.49E-14 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 Gene3D G3DSA:2.40.50.100 118 257 6.3E-48 T 13-10-2018 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 PIRSF PIRSF005763 1 262 1.1E-98 T 13-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 Pfam PF03459 TOBE domain 125 187 1.8E-11 T 13-10-2018 IPR005116 Transport-associated OB, type 1 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 Pfam PF03459 TOBE domain 198 257 1.1E-11 T 13-10-2018 IPR005116 Transport-associated OB, type 1 CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 Gene3D G3DSA:1.10.10.10 1 107 2.5E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16440 34c4a853b776a9686d038c08549bcfa3 262 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 1.7E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 215 227 - T 13-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 SUPERFAMILY SSF51735 5 278 2.95E-94 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_12500 4c656f763f30603fc10aaf247d797db9 488 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 213 459 1.7E-96 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 23 185 1.3E-50 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 PRINTS PR00084 Mannitol dehydrogenase signature 24 34 3.0E-21 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 PRINTS PR00084 Mannitol dehydrogenase signature 245 260 3.0E-21 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 PRINTS PR00084 Mannitol dehydrogenase signature 176 189 3.0E-21 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 PRINTS PR00084 Mannitol dehydrogenase signature 215 228 3.0E-21 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 SUPERFAMILY SSF48179 280 483 2.38E-65 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 Gene3D G3DSA:3.40.50.720 4 278 3.2E-113 T 13-10-2018 CS348_12500 4c656f763f30603fc10aaf247d797db9 488 Gene3D G3DSA:1.10.1040.10 279 486 6.5E-79 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_23200 70b31d196a0475c23421799c7311bfdb 340 Gene3D G3DSA:3.40.50.2300 30 324 1.2E-109 T 13-10-2018 CS348_23200 70b31d196a0475c23421799c7311bfdb 340 SUPERFAMILY SSF53822 27 340 1.99E-86 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_23200 70b31d196a0475c23421799c7311bfdb 340 Pfam PF13407 Periplasmic binding protein domain 30 285 1.2E-54 T 13-10-2018 IPR025997 Periplasmic binding protein CS348_23200 70b31d196a0475c23421799c7311bfdb 340 Gene3D G3DSA:3.40.50.2300 130 340 1.2E-109 T 13-10-2018 CS348_04500 09cd7430210771b74528aac00340dfb7 464 PRINTS PR00171 Sugar transporter signature 109 128 1.4E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04500 09cd7430210771b74528aac00340dfb7 464 PRINTS PR00171 Sugar transporter signature 26 36 1.4E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04500 09cd7430210771b74528aac00340dfb7 464 PRINTS PR00171 Sugar transporter signature 262 272 1.4E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04500 09cd7430210771b74528aac00340dfb7 464 PRINTS PR00171 Sugar transporter signature 375 387 1.4E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04500 09cd7430210771b74528aac00340dfb7 464 PRINTS PR00171 Sugar transporter signature 352 373 1.4E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04500 09cd7430210771b74528aac00340dfb7 464 ProSitePatterns PS00217 Sugar transport proteins signature 2. 114 139 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_04500 09cd7430210771b74528aac00340dfb7 464 Gene3D G3DSA:1.20.1250.20 9 453 2.5E-132 T 13-10-2018 CS348_04500 09cd7430210771b74528aac00340dfb7 464 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 7 447 1.7E-153 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04500 09cd7430210771b74528aac00340dfb7 464 ProSitePatterns PS00216 Sugar transport proteins signature 1. 307 323 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_04500 09cd7430210771b74528aac00340dfb7 464 Pfam PF00083 Sugar (and other) transporter 18 450 1.7E-142 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_04500 09cd7430210771b74528aac00340dfb7 464 SUPERFAMILY SSF103473 13 448 2.49E-79 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_14845 4eaf233d56f2dc67ae9ea2fdecfa0090 284 SUPERFAMILY SSF52540 78 259 3.25E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14845 4eaf233d56f2dc67ae9ea2fdecfa0090 284 Pfam PF02562 PhoH-like protein 79 283 9.6E-78 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 CS348_14845 4eaf233d56f2dc67ae9ea2fdecfa0090 284 Gene3D G3DSA:3.40.50.300 76 284 3.0E-66 T 13-10-2018 CS348_21375 789074d510df988d58c1c0516307078c 372 Gene3D G3DSA:3.40.640.10 23 275 8.4E-49 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_21375 789074d510df988d58c1c0516307078c 372 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 6.7E-184 T 13-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 CS348_21375 789074d510df988d58c1c0516307078c 372 SUPERFAMILY SSF53383 6 367 1.68E-31 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_21375 789074d510df988d58c1c0516307078c 372 Pfam PF03841 L-seryl-tRNA selenium transferase 13 267 1.5E-12 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 CS348_18440 1308f49b90c747f65a2d9e485c7ba3ca 370 SUPERFAMILY SSF55073 214 367 7.46E-44 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_18440 1308f49b90c747f65a2d9e485c7ba3ca 370 Pfam PF05230 MASE2 domain 39 126 2.0E-27 T 13-10-2018 IPR007894 MASE2 CS348_18440 1308f49b90c747f65a2d9e485c7ba3ca 370 SMART SM00267 198 369 3.0E-62 T 13-10-2018 IPR000160 GGDEF domain CS348_18440 1308f49b90c747f65a2d9e485c7ba3ca 370 Gene3D G3DSA:3.30.70.270 195 369 4.2E-51 T 13-10-2018 CS348_18440 1308f49b90c747f65a2d9e485c7ba3ca 370 Pfam PF00990 Diguanylate cyclase, GGDEF domain 210 365 1.7E-44 T 13-10-2018 IPR000160 GGDEF domain CS348_18440 1308f49b90c747f65a2d9e485c7ba3ca 370 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 205 369 1.6E-60 T 13-10-2018 IPR000160 GGDEF domain CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Gene3D G3DSA:3.40.640.10 130 424 5.9E-94 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Gene3D G3DSA:3.40.50.2300 1 129 9.8E-56 T 13-10-2018 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 PIRSF PIRSF009393 1 712 4.4E-286 T 13-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 1.3E-26 T 13-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 5.5E-46 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 SUPERFAMILY SSF53383 130 562 1.93E-106 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Gene3D G3DSA:3.90.100.10 595 714 3.1E-50 T 13-10-2018 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 3.4E-197 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 Gene3D G3DSA:3.90.1150.10 425 594 1.6E-70 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_06755 40142c79ccb792b38c383a7e38251ae2 714 SUPERFAMILY SSF55904 568 709 1.02E-44 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 Gene3D G3DSA:3.30.70.980 130 206 4.0E-45 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 5 238 3.9E-64 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 4 240 29.629 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 Gene3D G3DSA:3.30.70.980 87 237 4.0E-45 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 Pfam PF01709 Transcriptional regulator 7 238 7.5E-77 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 Gene3D G3DSA:1.10.10.200 5 82 1.8E-22 T 13-10-2018 IPR017856 Integrase-like, N-terminal CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 Hamap MF_00918 Probable transcriptional regulatory protein YeeN [yeeN]. 4 241 55.811 T 13-10-2018 IPR026562 Probable transcriptional regulatory protein YeeN CS348_21130 c747438aa92ad8a70bb4fc13adb7a5be 241 SUPERFAMILY SSF75625 5 238 7.98E-76 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 Gene3D G3DSA:3.40.430.10 136 367 5.9E-81 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 7 362 9.0E-154 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 2 99 5.6E-23 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 Pfam PF01872 RibD C-terminal domain 147 362 1.4E-61 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 PIRSF PIRSF006769 1 367 2.8E-138 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 146 364 1.3E-78 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 SUPERFAMILY SSF53927 3 145 7.03E-49 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 Gene3D G3DSA:3.40.140.10 1 135 8.4E-47 T 13-10-2018 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 88 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CS348_18285 657baaccd5318e6af69a15cbe4b027ba 367 SUPERFAMILY SSF53597 144 362 2.78E-57 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CS348_13695 940b58042da3997fd2155adeea036ef4 286 SUPERFAMILY SSF56112 17 280 6.92E-41 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_13695 940b58042da3997fd2155adeea036ef4 286 Pfam PF03881 Fructosamine kinase 1 285 1.6E-114 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 CS348_13695 940b58042da3997fd2155adeea036ef4 286 PIRSF PIRSF006221 1 286 2.1E-94 T 13-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 CS348_13695 940b58042da3997fd2155adeea036ef4 286 Gene3D G3DSA:3.90.1200.10 99 286 1.2E-58 T 13-10-2018 CS348_13695 940b58042da3997fd2155adeea036ef4 286 Gene3D G3DSA:3.30.200.20 1 92 4.4E-19 T 13-10-2018 CS348_11210 bea00b35b5e91505055b3c9d2c431f73 167 Pfam PF05974 Domain of unknown function (DUF892) 5 162 5.3E-57 T 13-10-2018 IPR010287 Domain of unknown function DUF892 CS348_11210 bea00b35b5e91505055b3c9d2c431f73 167 Gene3D G3DSA:1.20.1260.10 1 167 4.5E-71 T 13-10-2018 IPR012347 Ferritin-like CS348_11210 bea00b35b5e91505055b3c9d2c431f73 167 SUPERFAMILY SSF47240 1 154 6.49E-53 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_07340 490f209e034be385479e208c6c77a263 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 295 1.5E-88 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 CS348_07340 490f209e034be385479e208c6c77a263 299 Pfam PF04261 Dyp-type peroxidase family 5 295 3.1E-96 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 CS348_07340 490f209e034be385479e208c6c77a263 299 SUPERFAMILY SSF54909 1 296 4.29E-90 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Gene3D G3DSA:3.40.50.10950 446 751 1.4E-96 T 13-10-2018 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Gene3D G3DSA:3.40.50.10750 573 727 1.4E-96 T 13-10-2018 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 360 2.3E-20 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 SUPERFAMILY SSF53223 10 161 4.75E-54 T 13-10-2018 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 9.1E-100 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 13-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 SUPERFAMILY SSF53659 430 754 7.81E-92 T 13-10-2018 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 PIRSF PIRSF036684 1 758 0.0 T 13-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Gene3D G3DSA:3.40.50.720 161 445 1.6E-82 T 13-10-2018 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 SMART SM01274 18 151 2.3E-82 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 9.4E-29 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 SMART SM00919 163 401 1.1E-142 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 SUPERFAMILY SSF51735 163 453 2.63E-87 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07225 064b3618158bee0a5c2bfa1844491ad0 759 Gene3D G3DSA:3.40.50.10380 1 160 1.9E-69 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 SUPERFAMILY SSF53623 95 308 1.3E-47 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 8.9E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Pfam PF01225 Mur ligase family, catalytic domain 2 101 3.8E-19 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 9.4E-271 T 13-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Gene3D G3DSA:3.40.50.720 1 90 3.8E-36 T 13-10-2018 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Pfam PF08245 Mur ligase middle domain 108 291 3.9E-17 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.219 T 13-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Gene3D G3DSA:3.90.190.20 314 451 5.2E-31 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 SUPERFAMILY SSF53244 312 447 3.92E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 Gene3D G3DSA:3.40.1190.10 91 313 3.1E-51 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_21525 d5557e2089cf29243223bd924c68a41d 459 SUPERFAMILY SSF51984 1 90 6.02E-24 T 13-10-2018 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 4.4E-170 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 51.441 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 SMART SM01329 6 355 2.1E-201 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 Gene3D G3DSA:3.40.718.10 1 363 1.4E-160 T 13-10-2018 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 SUPERFAMILY SSF53659 2 360 8.28E-122 T 13-10-2018 CS348_19775 c34e1709ef3fe3ee906babdf31a6732d 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 8.5E-139 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 Gene3D G3DSA:3.90.180.10 13 335 2.1E-113 T 13-10-2018 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 SUPERFAMILY SSF50129 7 162 1.98E-43 T 13-10-2018 IPR011032 GroES-like superfamily CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 SUPERFAMILY SSF51735 142 305 7.62E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 137 1.0E-25 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 Pfam PF00107 Zinc-binding dehydrogenase 179 299 9.5E-22 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 172 199 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 Gene3D G3DSA:3.40.50.720 153 307 2.1E-113 T 13-10-2018 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_21165 679e7cab5f3c215a94dff7ef50a235dd 339 SMART SM00829 13 335 3.2E-6 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_05980 b3255dfb64329c191824434a86ce289c 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 289 2.4E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CS348_05980 b3255dfb64329c191824434a86ce289c 390 SUPERFAMILY SSF111369 56 178 1.29E-7 T 13-10-2018 CS348_05980 b3255dfb64329c191824434a86ce289c 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 1.5E-145 T 13-10-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 CS348_05980 b3255dfb64329c191824434a86ce289c 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 346 8.1E-17 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_05980 b3255dfb64329c191824434a86ce289c 390 Gene3D G3DSA:1.10.287.470 95 114 5.6E-10 T 13-10-2018 CS348_05980 b3255dfb64329c191824434a86ce289c 390 Gene3D G3DSA:2.40.30.170 234 353 9.5E-34 T 13-10-2018 CS348_05980 b3255dfb64329c191824434a86ce289c 390 Gene3D G3DSA:2.40.50.100 60 94 5.6E-10 T 13-10-2018 CS348_05980 b3255dfb64329c191824434a86ce289c 390 SUPERFAMILY SSF111369 194 268 6.67E-8 T 13-10-2018 CS348_05980 b3255dfb64329c191824434a86ce289c 390 Gene3D G3DSA:1.10.287.470 116 217 1.7E-5 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 Gene3D G3DSA:1.10.3860.10 8 407 7.2E-73 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 6 407 36.061 T 13-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 Pfam PF00375 Sodium:dicarboxylate symporter family 18 397 1.1E-63 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 223 242 2.9E-14 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 2.9E-14 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 188 207 2.9E-14 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 290 316 2.9E-14 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 352 372 2.9E-14 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 PRINTS PR00173 Glutamate-aspartate symporter signature 325 344 2.9E-14 T 13-10-2018 CS348_03100 30f5f7c5d9d04bfa02bfd835c650498e 414 SUPERFAMILY SSF118215 18 400 2.22E-95 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 9.9E-137 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 SUPERFAMILY SSF51735 30 209 6.06E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 Gene3D G3DSA:3.40.50.720 1 208 5.6E-87 T 13-10-2018 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 Gene3D G3DSA:1.10.1040.10 209 491 4.7E-130 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 SUPERFAMILY SSF48179 349 484 5.1E-40 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 357 482 3.4E-21 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 4.8E-28 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.4E-58 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 SUPERFAMILY SSF48179 210 369 5.27E-41 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_24260 980e8b1467ee1481c64b4fb34a61e6f2 491 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 485 38.703 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 SUPERFAMILY SSF53738 153 261 5.1E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 SUPERFAMILY SSF55957 374 456 8.37E-18 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 SUPERFAMILY SSF53738 3 176 3.22E-39 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Gene3D G3DSA:3.40.120.10 172 253 1.8E-29 T 13-10-2018 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 1.6E-31 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 SUPERFAMILY SSF53738 263 368 3.77E-33 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 153 258 6.5E-23 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Gene3D G3DSA:3.40.120.10 255 371 1.0E-35 T 13-10-2018 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Gene3D G3DSA:3.40.120.10 2 147 1.4E-50 T 13-10-2018 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 121 1.9E-32 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Gene3D G3DSA:3.30.310.50 374 455 9.9E-26 T 13-10-2018 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 444 7.5E-11 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_09140 dff7169fa2df7aa61de84e4fad400ba5 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 372 1.2E-25 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 Gene3D G3DSA:1.10.10.10 7 94 1.8E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05090 f000d4531394c04829cd6a422b7395a3 305 Gene3D G3DSA:3.40.190.10 103 288 3.8E-63 T 13-10-2018 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 Gene3D G3DSA:3.40.190.10 163 262 3.8E-63 T 13-10-2018 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 SUPERFAMILY SSF46785 3 87 4.75E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05090 f000d4531394c04829cd6a422b7395a3 305 Pfam PF03466 LysR substrate binding domain 91 292 1.0E-42 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_05090 f000d4531394c04829cd6a422b7395a3 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.4E-10 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_05090 f000d4531394c04829cd6a422b7395a3 305 SUPERFAMILY SSF53850 93 295 1.55E-42 T 13-10-2018 CS348_10945 3181a8c995d234a869928874af153a8f 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 1.4E-177 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CS348_10945 3181a8c995d234a869928874af153a8f 360 Gene3D G3DSA:1.20.58.410 4 101 6.8E-6 T 13-10-2018 CS348_10945 3181a8c995d234a869928874af153a8f 360 Gene3D G3DSA:3.30.70.1660 113 341 4.0E-94 T 13-10-2018 CS348_10945 3181a8c995d234a869928874af153a8f 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CS348_10945 3181a8c995d234a869928874af153a8f 360 Pfam PF03462 PCRF domain 13 203 1.7E-76 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CS348_10945 3181a8c995d234a869928874af153a8f 360 Pfam PF00472 RF-1 domain 216 321 2.8E-40 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CS348_10945 3181a8c995d234a869928874af153a8f 360 Gene3D G3DSA:3.30.160.20 210 291 4.0E-94 T 13-10-2018 CS348_10945 3181a8c995d234a869928874af153a8f 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 41.654 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CS348_10945 3181a8c995d234a869928874af153a8f 360 SUPERFAMILY SSF75620 12 353 9.03E-137 T 13-10-2018 CS348_10945 3181a8c995d234a869928874af153a8f 360 SMART SM00937 63 178 1.7E-72 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CS348_08950 920a92c006af34956c15eb40629d83b3 299 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 6 299 44.741 T 13-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 CS348_08950 920a92c006af34956c15eb40629d83b3 299 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 7 298 1.9E-149 T 13-10-2018 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 CS348_08950 920a92c006af34956c15eb40629d83b3 299 Gene3D G3DSA:2.60.200.40 128 284 7.0E-97 T 13-10-2018 CS348_08950 920a92c006af34956c15eb40629d83b3 299 SUPERFAMILY SSF111331 7 296 1.42E-70 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CS348_08950 920a92c006af34956c15eb40629d83b3 299 SMART SM00046 6 132 1.7E-28 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CS348_08950 920a92c006af34956c15eb40629d83b3 299 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 1 293 1.2E-110 T 13-10-2018 IPR005218 Diacylglycerol/lipid kinase CS348_08950 920a92c006af34956c15eb40629d83b3 299 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 129 8.5E-27 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CS348_08950 920a92c006af34956c15eb40629d83b3 299 Gene3D G3DSA:3.40.50.10330 20 287 7.0E-97 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 Gene3D G3DSA:3.40.50.300 98 282 7.9E-43 T 13-10-2018 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 SUPERFAMILY SSF63520 818 905 1.44E-11 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 Pfam PF00158 Sigma-54 interaction domain 106 272 7.4E-51 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 SUPERFAMILY SSF53062 562 673 2.09E-10 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 SMART SM00382 129 279 9.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 Gene3D G3DSA:1.10.8.60 285 367 1.4E-5 T 13-10-2018 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 SUPERFAMILY SSF52540 106 347 1.16E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 Gene3D G3DSA:3.40.50.510 559 683 8.5E-29 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 Gene3D G3DSA:1.10.1790.10 818 909 4.3E-5 T 13-10-2018 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 202 217 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 Pfam PF00874 PRD domain 827 906 2.3E-9 T 13-10-2018 IPR011608 PRD domain GO:0006355 CS348_20965 01a1a4ffda73959090efb58616bb7f33 921 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 133 146 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 19 141 1.8E-40 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 PRINTS PR00969 Pili chaperone signature 158 173 1.7E-26 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 PRINTS PR00969 Pili chaperone signature 97 114 1.7E-26 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 PRINTS PR00969 Pili chaperone signature 123 138 1.7E-26 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 PRINTS PR00969 Pili chaperone signature 69 90 1.7E-26 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 PRINTS PR00969 Pili chaperone signature 20 29 1.7E-26 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_08895 199b2fe6dab312d5c411c228d4756389 226 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 96 113 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_08895 199b2fe6dab312d5c411c228d4756389 226 SUPERFAMILY SSF49584 147 225 2.09E-12 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_08895 199b2fe6dab312d5c411c228d4756389 226 Gene3D G3DSA:2.60.40.10 143 225 7.5E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_08895 199b2fe6dab312d5c411c228d4756389 226 Gene3D G3DSA:2.60.40.10 21 142 2.3E-40 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_08895 199b2fe6dab312d5c411c228d4756389 226 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 163 216 4.0E-5 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_08895 199b2fe6dab312d5c411c228d4756389 226 SUPERFAMILY SSF49354 15 140 1.13E-38 T 13-10-2018 IPR008962 PapD-like superfamily CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.7E-24 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 539 551 3.7E-24 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 463 473 3.7E-24 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 305 319 3.7E-24 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 516 535 3.7E-24 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 SUPERFAMILY SSF81665 29 663 2.09E-12 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 Gene3D G3DSA:2.70.150.20 103 212 4.0E-27 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 71 334 2.5E-37 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 372 601 2.7E-48 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 Gene3D G3DSA:3.40.1110.10 320 451 3.4E-55 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 SUPERFAMILY SSF81653 115 207 7.19E-21 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 680 41.46 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 Pfam PF00122 E1-E2 ATPase 114 282 7.4E-34 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 Pfam PF00702 haloacid dehalogenase-like hydrolase 301 530 1.6E-38 T 13-10-2018 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 SUPERFAMILY SSF56784 293 559 7.59E-39 T 13-10-2018 IPR036412 HAD-like superfamily CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 SUPERFAMILY SSF81660 316 450 6.21E-37 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 307 313 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 CS348_16735 65103ad3c3ab95fdb6d1b46f2892ca25 682 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 2 677 0.0 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 CS348_18535 143e0d0a3da340ba1288da1890696db2 295 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 4 292 50.092 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 CS348_18535 143e0d0a3da340ba1288da1890696db2 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 250 1.9E-47 T 13-10-2018 CS348_18535 143e0d0a3da340ba1288da1890696db2 295 SUPERFAMILY SSF51621 5 290 8.97E-97 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_18535 143e0d0a3da340ba1288da1890696db2 295 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 7 291 3.0E-133 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 CS348_18535 143e0d0a3da340ba1288da1890696db2 295 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 CS348_18535 143e0d0a3da340ba1288da1890696db2 295 Gene3D G3DSA:3.20.20.60 2 295 2.1E-105 T 13-10-2018 CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 Pfam PF00924 Mechanosensitive ion channel 72 268 2.0E-58 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 Pfam PF05552 Conserved TM helix 15 64 3.7E-14 T 13-10-2018 IPR008910 Conserved TM helix CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 SUPERFAMILY SSF82861 28 112 1.27E-17 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 Gene3D G3DSA:2.30.30.60 129 178 5.9E-21 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 Gene3D G3DSA:3.30.70.100 179 273 9.2E-31 T 13-10-2018 CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 SUPERFAMILY SSF82689 181 278 3.79E-33 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 CS348_04620 8b64b6d742b3060472f5cd5c2851b54a 286 SUPERFAMILY SSF50182 114 179 1.24E-16 T 13-10-2018 IPR010920 LSM domain superfamily CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 SUPERFAMILY SSF51621 4 417 4.93E-158 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 Gene3D G3DSA:3.20.20.60 1 417 1.1E-185 T 13-10-2018 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 PIRSF PIRSF001362 1 434 3.4E-230 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 ProSitePatterns PS00161 Isocitrate lyase signature. 193 198 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 Pfam PF00463 Isocitrate lyase family 8 255 2.0E-61 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 Pfam PF00463 Isocitrate lyase family 256 434 2.6E-50 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 8 255 3.1E-121 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CS348_22685 80c0acc15122d746e1a30d2d1379ccf5 434 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 256 434 6.2E-93 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Gene3D G3DSA:1.20.120.890 532 666 1.3E-47 T 13-10-2018 IPR038321 TmcA, C-terminal domain superfamily CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Gene3D G3DSA:3.40.50.12320 192 327 2.4E-49 T 13-10-2018 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 SUPERFAMILY SSF52540 173 286 1.55E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Pfam PF05127 Helicase 197 337 1.8E-37 T 13-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 SUPERFAMILY SSF55729 350 514 3.36E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Gene3D G3DSA:3.40.50.11040 1 191 1.5E-74 T 13-10-2018 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Pfam PF13718 GNAT acetyltransferase 2 370 477 1.4E-16 T 13-10-2018 IPR000182 GNAT domain CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Pfam PF08351 Domain of unknown function (DUF1726) 66 150 3.3E-6 T 13-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Gene3D G3DSA:3.40.630.30 328 531 4.2E-78 T 13-10-2018 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 18 652 48.689 T 13-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 CS348_07155 e9ede561c81623e6b19b2ccb8d2e7d58 672 Pfam PF17176 tRNA-binding domain 537 654 1.1E-38 T 13-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain CS348_15565 5070acc38e81ee52d7d2e2f72e260193 79 SUPERFAMILY SSF54857 1 78 5.49E-24 T 13-10-2018 IPR036687 DinI-like superfamily CS348_15565 5070acc38e81ee52d7d2e2f72e260193 79 Gene3D G3DSA:3.30.910.10 1 79 8.6E-17 T 13-10-2018 IPR036687 DinI-like superfamily CS348_15565 5070acc38e81ee52d7d2e2f72e260193 79 Pfam PF06183 DinI-like family 17 76 3.4E-21 T 13-10-2018 IPR010391 DNA damage-inducible protein DinI-like CS348_13920 722878744f76f4c5fa458fb897bb5394 644 PIRSF PIRSF000549 1 644 3.5E-294 T 13-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 CS348_13920 722878744f76f4c5fa458fb897bb5394 644 Pfam PF08298 PrkA AAA domain 20 380 3.7E-180 T 13-10-2018 IPR013153 PrkA AAA domain CS348_13920 722878744f76f4c5fa458fb897bb5394 644 SUPERFAMILY SSF52540 75 368 1.79E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_13920 722878744f76f4c5fa458fb897bb5394 644 SMART SM00763 19 380 1.8E-218 T 13-10-2018 IPR013153 PrkA AAA domain CS348_13920 722878744f76f4c5fa458fb897bb5394 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 2.9E-75 T 13-10-2018 IPR010650 PrkA C-terminal domain CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 23 3.0E-4 T 13-10-2018 IPR024973 ESPR domain CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1457 1478 2100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1813 1843 4100.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 493 515 6700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1415 1439 1900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1551 1581 3300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1506 1537 5000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1862 1890 4600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1673 1694 2600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1388 1414 1000.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 1009 1030 5900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 799 820 600.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00710 856 880 2700.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SUPERFAMILY SSF51126 67 363 2.95E-52 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 Gene3D G3DSA:2.160.20.10 74 445 7.8E-100 T 13-10-2018 IPR012334 Pectin lyase fold CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 105 180 9.1E-26 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 Pfam PF05860 haemagglutination activity domain 77 183 6.9E-25 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal CS348_04055 b0b1cf4717ad8d3ea2023d2b826636bb 2101 SMART SM00912 71 183 9.0E-41 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal CS348_00990 40785a8282413070fe126dfd41e458ff 70 Gene3D G3DSA:2.40.50.140 2 70 4.8E-32 T 13-10-2018 CS348_00990 40785a8282413070fe126dfd41e458ff 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 13-10-2018 IPR019844 Cold-shock conserved site CS348_00990 40785a8282413070fe126dfd41e458ff 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 8.9E-33 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_00990 40785a8282413070fe126dfd41e458ff 70 PRINTS PR00050 Cold shock protein signature 7 22 5.8E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_00990 40785a8282413070fe126dfd41e458ff 70 PRINTS PR00050 Cold shock protein signature 28 37 5.8E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_00990 40785a8282413070fe126dfd41e458ff 70 PRINTS PR00050 Cold shock protein signature 43 61 5.8E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_00990 40785a8282413070fe126dfd41e458ff 70 PIRSF PIRSF002599 1 70 2.9E-26 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_00990 40785a8282413070fe126dfd41e458ff 70 SMART SM00357 6 70 2.5E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_00990 40785a8282413070fe126dfd41e458ff 70 SUPERFAMILY SSF50249 4 69 3.94E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.455 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 SUPERFAMILY SSF52161 1 140 1.83E-60 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 5.6E-68 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 PIRSF PIRSF002181 1 142 7.2E-51 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 13-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 Pfam PF00572 Ribosomal protein L13 15 138 5.0E-57 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CS348_02500 33e7dc7d11d7b539319895ea6c933e23 142 Gene3D G3DSA:3.90.1180.10 1 142 2.7E-65 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_08430 b205f032ac59f82b06782f0fad60a20d 347 Gene3D G3DSA:1.10.8.640 22 108 3.7E-38 T 13-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily CS348_08430 b205f032ac59f82b06782f0fad60a20d 347 Pfam PF03918 Cytochrome C biogenesis protein 11 134 1.0E-49 T 13-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family CS348_08430 b205f032ac59f82b06782f0fad60a20d 347 Gene3D G3DSA:1.25.40.10 214 347 2.4E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_08430 b205f032ac59f82b06782f0fad60a20d 347 SUPERFAMILY SSF48452 224 328 3.42E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_08430 b205f032ac59f82b06782f0fad60a20d 347 Pfam PF14559 Tetratricopeptide repeat 240 304 3.0E-6 T 13-10-2018 CS348_14085 bdf7239b1c64e6f0022b317bb0b34eda 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 115 319 2.5E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_14085 bdf7239b1c64e6f0022b317bb0b34eda 324 SUPERFAMILY SSF161098 93 302 3.49E-16 T 13-10-2018 IPR035906 MetI-like superfamily CS348_14085 bdf7239b1c64e6f0022b317bb0b34eda 324 Gene3D G3DSA:1.10.3720.10 87 316 8.1E-16 T 13-10-2018 IPR035906 MetI-like superfamily CS348_10270 3161560d7886b965aca2dab343c44c32 336 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 3.0E-115 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 CS348_10270 3161560d7886b965aca2dab343c44c32 336 SMART SM00382 54 181 1.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_10270 3161560d7886b965aca2dab343c44c32 336 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 336 184.266 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CS348_10270 3161560d7886b965aca2dab343c44c32 336 Gene3D G3DSA:1.10.10.10 260 336 5.6E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_10270 3161560d7886b965aca2dab343c44c32 336 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.1E-32 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CS348_10270 3161560d7886b965aca2dab343c44c32 336 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 331 2.0E-40 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CS348_10270 3161560d7886b965aca2dab343c44c32 336 SUPERFAMILY SSF46785 260 333 6.46E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_10270 3161560d7886b965aca2dab343c44c32 336 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 3.2E-146 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CS348_10270 3161560d7886b965aca2dab343c44c32 336 SUPERFAMILY SSF52540 23 255 6.0E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_10270 3161560d7886b965aca2dab343c44c32 336 Gene3D G3DSA:3.40.50.300 21 184 1.4E-38 T 13-10-2018 CS348_10270 3161560d7886b965aca2dab343c44c32 336 Gene3D G3DSA:1.10.8.60 185 258 3.9E-30 T 13-10-2018 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 250 329 4.4E-19 T 13-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 Gene3D G3DSA:3.30.390.50 250 338 1.0E-34 T 13-10-2018 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 Gene3D G3DSA:3.30.930.10 2 249 3.2E-90 T 13-10-2018 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 2 329 4.1E-140 T 13-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 338 59.595 T 13-10-2018 IPR023741 Lipoate-protein ligase A GO:0009249|GO:0016979 KEGG: 00785+6.3.1.20 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 SUPERFAMILY SSF82649 248 335 3.35E-25 T 13-10-2018 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 SUPERFAMILY SSF55681 3 247 1.24E-79 T 13-10-2018 CS348_20495 2101a6bfae13ffaddae907d9895649e8 338 Pfam PF03099 Biotin/lipoate A/B protein ligase family 52 158 7.8E-9 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 Pfam PF01381 Helix-turn-helix 12 63 8.3E-14 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 Pfam PF00717 Peptidase S24-like 130 202 1.2E-11 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 SUPERFAMILY SSF51306 123 216 3.14E-23 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 Gene3D G3DSA:1.10.260.40 1 73 2.6E-24 T 13-10-2018 CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 Gene3D G3DSA:2.10.109.10 85 218 1.9E-45 T 13-10-2018 CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 SMART SM00530 7 63 1.2E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_15765 ebae1a9a3fcd6be4a7e1dc438503761c 218 SUPERFAMILY SSF47413 3 70 3.94E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 1.2E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 1.2E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 1.2E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 420 1.2E-19 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 SUPERFAMILY SSF47384 239 308 2.55E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 SUPERFAMILY SSF103190 35 159 2.16E-14 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CS348_22740 ebd700b2c469f23d3873909cee5da373 465 Gene3D G3DSA:1.10.287.130 232 310 1.1E-16 T 13-10-2018 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 SMART SM00388 246 312 1.3E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 355 458 1.5E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_22740 ebd700b2c469f23d3873909cee5da373 465 SMART SM00387 354 461 3.4E-36 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_22740 ebd700b2c469f23d3873909cee5da373 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 247 308 1.0E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_22740 ebd700b2c469f23d3873909cee5da373 465 SUPERFAMILY SSF55874 302 459 1.83E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_22740 ebd700b2c469f23d3873909cee5da373 465 Gene3D G3DSA:3.30.565.10 313 464 1.9E-47 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 Hamap MF_01151 Protein GrpE [grpE]. 4 194 20.565 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 Gene3D G3DSA:3.90.20.20 34 137 7.2E-39 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 Gene3D G3DSA:2.30.22.10 138 194 4.1E-24 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 ProSitePatterns PS01071 grpE protein signature. 149 192 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 PRINTS PR00773 GrpE protein signature 146 161 4.2E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 PRINTS PR00773 GrpE protein signature 63 79 4.2E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 PRINTS PR00773 GrpE protein signature 91 106 4.2E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 PRINTS PR00773 GrpE protein signature 173 192 4.2E-26 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 Pfam PF01025 GrpE 35 194 5.7E-47 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 SUPERFAMILY SSF58014 49 138 4.84E-27 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CS348_06395 70c7c9fc6c1207aaee212c17ed6cb379 196 SUPERFAMILY SSF51064 139 194 3.4E-16 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 Gene3D G3DSA:1.20.1250.20 240 449 1.1E-62 T 13-10-2018 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 SUPERFAMILY SSF103473 12 441 5.89E-84 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 3.7E-269 T 13-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 PIRSF PIRSF002808 5 451 1.8E-176 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 Pfam PF07690 Major Facilitator Superfamily 34 400 6.4E-45 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 13-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 Gene3D G3DSA:1.20.1250.20 18 226 3.5E-58 T 13-10-2018 CS348_08240 9ab154b3a78bc4aa2c4bb51c71a8c071 452 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 3.1E-168 T 13-10-2018 CS348_00880 36ea1706ab767d73d104b048a8d5b6d1 157 Gene3D G3DSA:3.30.70.20 64 117 2.4E-29 T 13-10-2018 CS348_00880 36ea1706ab767d73d104b048a8d5b6d1 157 Gene3D G3DSA:3.30.70.20 5 148 2.4E-29 T 13-10-2018 CS348_00880 36ea1706ab767d73d104b048a8d5b6d1 157 SUPERFAMILY SSF54862 1 143 1.47E-38 T 13-10-2018 CS348_00880 36ea1706ab767d73d104b048a8d5b6d1 157 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_00880 36ea1706ab767d73d104b048a8d5b6d1 157 Pfam PF13247 4Fe-4S dicluster domain 54 142 4.3E-13 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_05270 03db4249b31f61b61006f4a6405499ac 265 Gene3D G3DSA:3.60.15.10 1 257 5.8E-67 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_05270 03db4249b31f61b61006f4a6405499ac 265 SUPERFAMILY SSF56281 17 249 2.49E-36 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_05270 03db4249b31f61b61006f4a6405499ac 265 Pfam PF00753 Metallo-beta-lactamase superfamily 24 155 3.5E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_05270 03db4249b31f61b61006f4a6405499ac 265 SMART SM00849 25 241 0.0062 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_14585 9d67be0c24b009edbe3dcc52f3b1e7d3 219 SMART SM00858 95 157 5.5E-8 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CS348_14585 9d67be0c24b009edbe3dcc52f3b1e7d3 219 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 84 217 4.6E-38 T 13-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal CS348_14585 9d67be0c24b009edbe3dcc52f3b1e7d3 219 Pfam PF13144 Chaperone for flagella basal body P-ring formation 30 215 1.1E-36 T 13-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal CS348_14585 9d67be0c24b009edbe3dcc52f3b1e7d3 219 Gene3D G3DSA:2.30.30.760 160 219 1.2E-26 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 25 47 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 151 170 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 118 146 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 54 78 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 353 375 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 198 219 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 381 408 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 PRINTS PR01608 Salmonella/Shigella invasin protein C signature 170 193 2.4E-106 T 13-10-2018 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 TIGRFAM TIGR02101 IpaC_SipC: type III secretion target, IpaC/SipC family 69 404 2.9E-128 T 13-10-2018 IPR005427 Salmonella/Shigella invasin protein C GO:0009405 CS348_05600 15c47ff9248182ccc8ba26007effcbdd 409 Pfam PF09599 Salmonella-Shigella invasin protein C (IpaC_SipC) 47 397 1.6E-146 T 13-10-2018 IPR005427 Salmonella/Shigella invasin protein C GO:0009405 CS348_21615 737cb8c58300773038e863638a3ba867 321 SUPERFAMILY SSF103481 43 141 1.7E-9 T 13-10-2018 CS348_21615 737cb8c58300773038e863638a3ba867 321 SUPERFAMILY SSF103481 221 309 7.19E-6 T 13-10-2018 CS348_21615 737cb8c58300773038e863638a3ba867 321 Pfam PF00892 EamA-like transporter family 3 122 2.6E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.954 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 SUPERFAMILY SSF50346 106 182 9.22E-20 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 Gene3D G3DSA:2.30.30.240 101 182 1.7E-31 T 13-10-2018 CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 Pfam PF05239 PRC-barrel domain 104 177 3.3E-9 T 13-10-2018 IPR027275 PRC-barrel domain CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 SUPERFAMILY SSF50447 13 99 4.94E-25 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 Gene3D G3DSA:2.40.30.60 4 100 2.3E-35 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 Pfam PF01782 RimM N-terminal domain 16 96 2.5E-27 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 CS348_06430 3ccac7e2ae1f43dea45ec727cfd1ab6b 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 1.6E-62 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CS348_19885 7b1dedefd9c72bc905d0f71a0d94da94 329 Gene3D G3DSA:3.40.718.10 1 329 1.6E-134 T 13-10-2018 CS348_19885 7b1dedefd9c72bc905d0f71a0d94da94 329 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 321 5.2E-108 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CS348_19885 7b1dedefd9c72bc905d0f71a0d94da94 329 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 324 7.1E-130 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CS348_19885 7b1dedefd9c72bc905d0f71a0d94da94 329 SUPERFAMILY SSF53659 4 327 1.76E-118 T 13-10-2018 CS348_19885 7b1dedefd9c72bc905d0f71a0d94da94 329 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 4 328 37.369 T 13-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 243 285 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 SUPERFAMILY SSF46689 244 291 5.38E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 Pfam PF07883 Cupin domain 38 99 2.3E-7 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 Gene3D G3DSA:2.60.120.10 21 104 3.3E-8 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 258 273 3.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 289 3.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 Gene3D G3DSA:1.10.10.60 188 294 1.9E-24 T 13-10-2018 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 SMART SM00342 206 289 7.0E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 Pfam PF12833 Helix-turn-helix domain 213 291 5.4E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 TIGRFAM TIGR02297 HpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA 6 291 4.7E-118 T 13-10-2018 IPR011983 4-hydroxyphenylacetate catabolism regulatory protein HpaA CS348_14950 f4b22c4e44c11ef88a9a13e1137b2913 298 SUPERFAMILY SSF51182 41 123 1.78E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_23675 7e960157609cce5203673a121a67b9fa 298 Gene3D G3DSA:3.40.1190.20 2 297 1.3E-88 T 13-10-2018 IPR029056 Ribokinase-like CS348_23675 7e960157609cce5203673a121a67b9fa 298 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 238 251 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_23675 7e960157609cce5203673a121a67b9fa 298 SUPERFAMILY SSF53613 1 293 4.83E-67 T 13-10-2018 IPR029056 Ribokinase-like CS348_23675 7e960157609cce5203673a121a67b9fa 298 Pfam PF00294 pfkB family carbohydrate kinase 3 286 1.5E-62 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_23675 7e960157609cce5203673a121a67b9fa 298 PRINTS PR00990 Ribokinase signature 33 52 2.9E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_23675 7e960157609cce5203673a121a67b9fa 298 PRINTS PR00990 Ribokinase signature 6 27 2.9E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_23675 7e960157609cce5203673a121a67b9fa 298 PRINTS PR00990 Ribokinase signature 209 220 2.9E-6 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_23675 7e960157609cce5203673a121a67b9fa 298 Hamap MF_00999 Sulfofructose kinase. 1 298 69.959 T 13-10-2018 IPR030877 Sulfofructose kinase GO:0061594 MetaCyc: PWY-7446 CS348_03495 63f67f36c2a520f08da8a329314e0110 141 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 15 136 2.8E-68 T 13-10-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0016020|GO:0055085 CS348_03495 63f67f36c2a520f08da8a329314e0110 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 134 2.0E-29 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 CS348_03495 63f67f36c2a520f08da8a329314e0110 141 Gene3D G3DSA:3.30.420.270 63 132 7.9E-30 T 13-10-2018 CS348_25515 dc04771e55b61c8f020e337b6178bd8f 214 Pfam PF10784 Plasmid stability protein 117 174 1.4E-11 T 13-10-2018 IPR019720 Plasmid stability protein, StbB CS348_25515 dc04771e55b61c8f020e337b6178bd8f 214 Pfam PF10784 Plasmid stability protein 8 69 1.6E-15 T 13-10-2018 IPR019720 Plasmid stability protein, StbB CS348_25515 dc04771e55b61c8f020e337b6178bd8f 214 Gene3D G3DSA:1.20.120.1170 14 86 5.5E-19 T 13-10-2018 IPR038307 StbB superfamily CS348_25515 dc04771e55b61c8f020e337b6178bd8f 214 Gene3D G3DSA:1.20.120.1170 118 183 2.9E-13 T 13-10-2018 IPR038307 StbB superfamily CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 Gene3D G3DSA:3.30.420.40 2 600 4.9E-283 T 13-10-2018 CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 PIRSF PIRSF011502 1 608 0.0 T 13-10-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 Gene3D G3DSA:3.90.470.30 77 370 4.9E-283 T 13-10-2018 CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 TIGRFAM TIGR04491 reactive_PduG: diol dehydratase reactivase alpha subunit 3 601 5.7E-286 T 13-10-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 SUPERFAMILY SSF53067 3 403 3.11E-68 T 13-10-2018 CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 Gene3D G3DSA:3.50.30.70 97 247 4.9E-283 T 13-10-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain superfamily CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 Gene3D G3DSA:3.30.420.40 405 582 4.9E-283 T 13-10-2018 CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 Pfam PF08841 Diol dehydratase reactivase ATPase-like domain 275 602 4.0E-163 T 13-10-2018 IPR030994 Diol dehydratase reactivase ATPase-like domain CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 SUPERFAMILY SSF53067 407 600 4.0E-34 T 13-10-2018 CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 Gene3D G3DSA:2.40.50.140 466 510 4.9E-283 T 13-10-2018 CS348_09450 0a70963c1b609205f9f11891d64a73ba 610 SUPERFAMILY SSF82317 93 254 3.66E-68 T 13-10-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain superfamily CS348_17190 373778819ea66b854e4daa0fbb347cad 186 Gene3D G3DSA:1.10.3480.10 3 186 1.1E-32 T 13-10-2018 CS348_17190 373778819ea66b854e4daa0fbb347cad 186 Pfam PF02613 Nitrate reductase delta subunit 30 152 1.2E-24 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_17190 373778819ea66b854e4daa0fbb347cad 186 SUPERFAMILY SSF89155 3 184 3.92E-39 T 13-10-2018 IPR036411 TorD-like superfamily CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 Gene3D G3DSA:3.40.1080.20 302 441 4.6E-53 T 13-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 SUPERFAMILY SSF100950 5 233 1.9E-36 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 284 433 1.5E-57 T 13-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 SUPERFAMILY SSF100950 200 439 2.6E-58 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 7 196 7.6E-16 T 13-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 Gene3D G3DSA:3.40.1080.10 1 196 1.1E-57 T 13-10-2018 CS348_03725 94d6bd17b54dd870c9e8b711ea631fc1 441 Gene3D G3DSA:3.30.750.70 200 299 2.2E-35 T 13-10-2018 CS348_20080 4e69cb9b1074739a5000df46696b3a1b 79 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 4 76 6.4E-22 T 13-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 CS348_20080 4e69cb9b1074739a5000df46696b3a1b 79 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 9 76 1.7E-16 T 13-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 CS348_20080 4e69cb9b1074739a5000df46696b3a1b 79 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 79 32.836 T 13-10-2018 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 PRINTS PR00969 Pili chaperone signature 96 113 1.3E-22 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 PRINTS PR00969 Pili chaperone signature 156 171 1.3E-22 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 PRINTS PR00969 Pili chaperone signature 67 88 1.3E-22 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 PRINTS PR00969 Pili chaperone signature 21 30 1.3E-22 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 PRINTS PR00969 Pili chaperone signature 120 135 1.3E-22 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 SUPERFAMILY SSF49584 143 225 7.33E-17 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 161 221 4.3E-11 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 Gene3D G3DSA:2.60.40.10 20 139 1.1E-30 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 Gene3D G3DSA:2.60.40.10 141 229 2.2E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 138 3.8E-30 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_24850 529d03f1e2fee9dd4aa8ac50d7de0287 231 SUPERFAMILY SSF49354 21 138 2.46E-30 T 13-10-2018 IPR008962 PapD-like superfamily CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82866 291 490 1.96E-48 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82866 812 1010 8.37E-44 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82693 40 135 8.2E-23 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82693 136 324 1.36E-20 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82714 183 266 4.71E-15 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:3.30.70.1320 135 326 5.4E-292 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:3.30.70.1430 557 649 5.4E-292 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 26.942 T 13-10-2018 IPR023931 Multidrug resistance protein MdtC CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:1.20.1640.10 503 1005 5.4E-292 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:3.30.2090.10 701 789 5.4E-292 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82714 703 785 8.11E-16 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:3.30.70.1430 40 797 5.4E-292 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:1.20.1640.10 10 502 5.4E-292 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:3.30.2090.10 179 269 5.4E-292 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 Gene3D G3DSA:3.30.70.1440 650 847 5.4E-292 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82693 665 834 4.19E-6 T 13-10-2018 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.8E-86 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_09010 7d16162ff7e4bd44833452507d90d182 1026 SUPERFAMILY SSF82693 555 650 1.67E-18 T 13-10-2018 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 Pfam PF01842 ACT domain 8 69 5.7E-8 T 13-10-2018 IPR002912 ACT domain CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 SUPERFAMILY SSF53328 86 279 1.96E-59 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PIRSF PIRSF036480 4 280 1.8E-113 T 13-10-2018 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 SUPERFAMILY SSF55021 6 67 4.08E-9 T 13-10-2018 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 Gene3D G3DSA:3.30.70.260 2 79 7.5E-16 T 13-10-2018 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 41 53 6.0E-70 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 108 135 6.0E-70 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 9 35 6.0E-70 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 86 108 6.0E-70 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 254 279 6.0E-70 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 232 254 6.0E-70 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 4 280 46.073 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 8 280 5.3E-132 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 Pfam PF00551 Formyl transferase 86 262 8.1E-54 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_11065 fbe219bd91661e970148c24e0d544c2e 280 Gene3D G3DSA:3.40.50.170 84 280 4.9E-67 T 13-10-2018 CS348_01190 2b1d7c3c365b789482c494c154e3109f 440 Pfam PF00083 Sugar (and other) transporter 24 226 2.0E-23 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_01190 2b1d7c3c365b789482c494c154e3109f 440 ProSitePatterns PS00216 Sugar transport proteins signature 1. 308 325 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_01190 2b1d7c3c365b789482c494c154e3109f 440 Pfam PF07690 Major Facilitator Superfamily 254 432 2.0E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_01190 2b1d7c3c365b789482c494c154e3109f 440 Gene3D G3DSA:1.20.1250.20 20 440 2.6E-65 T 13-10-2018 CS348_01190 2b1d7c3c365b789482c494c154e3109f 440 SUPERFAMILY SSF103473 19 438 3.4E-64 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01190 2b1d7c3c365b789482c494c154e3109f 440 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 30 425 7.0E-151 T 13-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Pfam PF06723 MreB/Mbl protein 11 338 1.5E-150 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 SUPERFAMILY SSF53067 153 340 3.69E-50 T 13-10-2018 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 13-10-2018 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Gene3D G3DSA:3.90.640.10 190 263 1.7E-130 T 13-10-2018 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Gene3D G3DSA:3.30.420.40 158 321 1.7E-130 T 13-10-2018 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 Gene3D G3DSA:3.30.420.40 14 331 1.7E-130 T 13-10-2018 CS348_02355 73d2ba4e5d849d4bc6ef9989dcc9beba 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.6E-171 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 SUPERFAMILY SSF50129 318 369 3.11E-12 T 13-10-2018 IPR011032 GroES-like superfamily CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 152 1.2E-25 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 Pfam PF00107 Zinc-binding dehydrogenase 197 329 2.4E-22 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 SUPERFAMILY SSF51735 160 334 2.19E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 Gene3D G3DSA:3.90.180.10 6 364 4.8E-151 T 13-10-2018 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 6.6E-222 T 13-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 SMART SM00829 12 367 0.0025 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 Gene3D G3DSA:3.40.50.720 174 312 4.8E-151 T 13-10-2018 CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 SUPERFAMILY SSF50129 1 189 1.31E-72 T 13-10-2018 IPR011032 GroES-like superfamily CS348_11835 dad3eb909d88aa71fb7a8ce9c0f2e7a5 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 61 75 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 Pfam PF00270 DEAD/DEAH box helicase 25 196 9.5E-51 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 Gene3D G3DSA:3.40.50.300 215 395 3.7E-50 T 13-10-2018 CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 SMART SM00487 20 223 7.3E-64 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 446 52.576 T 13-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 Pfam PF00271 Helicase conserved C-terminal domain 236 339 2.8E-26 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 SUPERFAMILY SSF52540 75 361 7.96E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 Gene3D G3DSA:3.40.50.300 1 211 2.7E-79 T 13-10-2018 CS348_16225 f7bcdb00024ed0b3f2d71b6d1b16aca4 453 SMART SM00490 259 340 7.6E-32 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_10305 895b980672ba85634cb2c5866f405ebd 480 SUPERFAMILY SSF52935 329 479 7.33E-39 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 8.4E-51 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 SUPERFAMILY SSF51621 3 345 8.72E-86 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 Gene3D G3DSA:2.40.33.10 74 172 9.5E-154 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 8.0E-131 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 Gene3D G3DSA:3.20.20.60 6 341 9.5E-154 T 13-10-2018 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 13-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 Gene3D G3DSA:3.40.1380.20 342 475 9.5E-154 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 4.9E-175 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 6.2E-29 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 CS348_10305 895b980672ba85634cb2c5866f405ebd 480 SUPERFAMILY SSF50800 74 168 1.74E-24 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 Gene3D G3DSA:3.30.565.10 423 557 1.6E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 SMART SM00065 218 365 5.6E-13 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 SMART SM00387 459 559 5.0E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 Pfam PF13185 GAF domain 243 352 7.2E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 SUPERFAMILY SSF55874 424 557 1.72E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 Pfam PF06580 Histidine kinase 371 448 1.9E-25 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 SUPERFAMILY SSF55781 243 359 1.96E-8 T 13-10-2018 CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 Pfam PF07694 5TMR of 5TMR-LYT 28 196 2.5E-59 T 13-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 CS348_08850 cf5f5b0a5d166a951376d64051dc33f8 561 Gene3D G3DSA:3.30.450.40 233 366 4.1E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 Gene3D G3DSA:3.40.50.970 472 706 9.1E-111 T 13-10-2018 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 Gene3D G3DSA:3.40.50.920 707 887 1.2E-74 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 Gene3D G3DSA:3.40.50.970 57 471 9.2E-137 T 13-10-2018 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 SUPERFAMILY SSF52518 474 701 1.41E-98 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 SUPERFAMILY SSF52922 702 885 3.14E-63 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 106 294 2.5E-9 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 PIRSF PIRSF000156 1 887 0.0 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 CS348_19555 dc9d49087746a04c2d2612f30b77d230 887 SUPERFAMILY SSF52518 58 469 3.07E-143 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.8E-14 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 SUPERFAMILY SSF117143 93 222 9.42E-35 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 2.7E-117 T 13-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 183 260 3.7E-26 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 4.3E-29 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CS348_14550 306db6ff36b9dd58d6c21cbbbb12e03e 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 9.3E-49 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CS348_12420 41ee9f5376390461640e875071e03f2c 396 Pfam PF07690 Major Facilitator Superfamily 18 319 2.5E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12420 41ee9f5376390461640e875071e03f2c 396 SUPERFAMILY SSF103473 5 386 1.28E-57 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12420 41ee9f5376390461640e875071e03f2c 396 Gene3D G3DSA:1.20.1250.20 9 385 8.2E-45 T 13-10-2018 CS348_12420 41ee9f5376390461640e875071e03f2c 396 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 1 390 29.647 T 13-10-2018 IPR023495 Sugar efflux transporter, putative CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 SUPERFAMILY SSF50129 1 170 8.22E-54 T 13-10-2018 IPR011032 GroES-like superfamily CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 58 72 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 Pfam PF00107 Zinc-binding dehydrogenase 171 296 4.4E-17 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 Gene3D G3DSA:3.90.180.10 13 320 2.8E-108 T 13-10-2018 CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 130 6.3E-35 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 Gene3D G3DSA:3.40.50.720 149 282 2.8E-108 T 13-10-2018 CS348_12510 557fb8c0f1b8011f3a37cc200ab8c9f7 339 SUPERFAMILY SSF51735 138 305 5.73E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_17135 3532557be8abc31e94868e38c7d56a2f 183 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 13 175 2.1E-57 T 13-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 CS348_17135 3532557be8abc31e94868e38c7d56a2f 183 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 13 176 2.8E-52 T 13-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 CS348_21120 8102fdcbda065210c6437245232a185e 543 Pfam PF13847 Methyltransferase domain 330 447 3.6E-11 T 13-10-2018 IPR025714 Methyltransferase domain CS348_21120 8102fdcbda065210c6437245232a185e 543 Pfam PF13649 Methyltransferase domain 71 165 4.1E-20 T 13-10-2018 CS348_21120 8102fdcbda065210c6437245232a185e 543 Gene3D G3DSA:3.40.50.150 35 284 4.1E-34 T 13-10-2018 CS348_21120 8102fdcbda065210c6437245232a185e 543 SUPERFAMILY SSF53335 54 264 7.54E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_21120 8102fdcbda065210c6437245232a185e 543 Gene3D G3DSA:3.40.50.150 296 543 9.5E-101 T 13-10-2018 CS348_21120 8102fdcbda065210c6437245232a185e 543 SUPERFAMILY SSF53335 300 539 8.9E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 378 4.3E-195 T 13-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 Gene3D G3DSA:1.20.1090.10 186 382 1.3E-69 T 13-10-2018 CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 SUPERFAMILY SSF56796 7 379 7.33E-122 T 13-10-2018 CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 Gene3D G3DSA:3.40.50.1970 1 185 8.0E-57 T 13-10-2018 CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 374 3.6E-116 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_05135 65eb9e2fbe285fffc62ee4bf2305729e 382 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_13700 e1a77ff6f2cd981304a062b95fcc4ddb 178 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 178 7.0E-92 T 13-10-2018 CS348_13700 e1a77ff6f2cd981304a062b95fcc4ddb 178 Pfam PF14002 YniB-like protein 15 177 3.0E-79 T 13-10-2018 IPR025229 YniB-like protein CS348_12250 56c8f9d9400cb4f84b27b487b0f0832f 302 Pfam PF03466 LysR substrate binding domain 89 295 3.9E-38 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_12250 56c8f9d9400cb4f84b27b487b0f0832f 302 SUPERFAMILY SSF53850 88 298 1.99E-44 T 13-10-2018 CS348_12250 56c8f9d9400cb4f84b27b487b0f0832f 302 SUPERFAMILY SSF46785 7 88 3.55E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12250 56c8f9d9400cb4f84b27b487b0f0832f 302 Gene3D G3DSA:1.10.10.10 5 89 1.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12250 56c8f9d9400cb4f84b27b487b0f0832f 302 Gene3D G3DSA:3.40.190.290 92 296 8.7E-61 T 13-10-2018 CS348_12250 56c8f9d9400cb4f84b27b487b0f0832f 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 8.3E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00630 a926b99e111adf87a940f54932cb2fe0 337 Pfam PF08437 Glycosyl transferase family 8 C-terminal 277 333 6.2E-22 T 13-10-2018 IPR013645 Glycosyl transferase, family 8, C-terminal GO:0008918|GO:0009103 CS348_00630 a926b99e111adf87a940f54932cb2fe0 337 SUPERFAMILY SSF53448 28 295 1.01E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_00630 a926b99e111adf87a940f54932cb2fe0 337 Pfam PF01501 Glycosyl transferase family 8 28 275 2.2E-65 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 CS348_00630 a926b99e111adf87a940f54932cb2fe0 337 Gene3D G3DSA:3.90.550.10 27 290 4.2E-58 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 Gene3D G3DSA:3.40.50.300 27 291 7.2E-42 T 13-10-2018 CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 34 695 34.956 T 13-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 SUPERFAMILY SSF52540 46 670 2.36E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 Pfam PF06733 DEAD_2 197 264 1.5E-6 T 13-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 Gene3D G3DSA:3.40.50.300 501 693 4.4E-21 T 13-10-2018 CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 SMART SM00491 544 676 1.8E-36 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 SMART SM00487 23 307 1.3E-4 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_16220 37eda775e89c7b00bcb276e51962f73e 714 Pfam PF13307 Helicase C-terminal domain 531 688 1.4E-24 T 13-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 CS348_24070 1c6f1a90e62f75a40c5b24db4f36f03b 235 Gene3D G3DSA:3.30.450.40 49 234 8.8E-36 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_24070 1c6f1a90e62f75a40c5b24db4f36f03b 235 Pfam PF04340 Protein of unknown function, DUF484 11 232 1.5E-85 T 13-10-2018 IPR007435 Protein of unknown function DUF484 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 4.5E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 4.5E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 4.5E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 4.5E-6 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 SUPERFAMILY SSF46458 1 142 6.15E-38 T 13-10-2018 IPR009050 Globin-like superfamily CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Gene3D G3DSA:1.10.490.10 1 143 2.3E-49 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 SUPERFAMILY SSF52343 257 394 5.76E-36 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Pfam PF00970 Oxidoreductase FAD-binding domain 157 252 2.5E-9 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 SUPERFAMILY SSF63380 148 253 5.79E-29 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 56.521 T 13-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Gene3D G3DSA:3.40.50.80 256 396 1.4E-33 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 372 9.0E-16 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Pfam PF00042 Globin 7 102 1.1E-14 T 13-10-2018 IPR000971 Globin GO:0020037 CS348_06770 018feda56da9788db7e5dfa1dc6ae4b1 396 Gene3D G3DSA:2.40.30.10 149 254 4.4E-32 T 13-10-2018 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 SUPERFAMILY SSF46689 245 295 2.51E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 SMART SM00342 208 291 1.8E-35 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 Gene3D G3DSA:1.10.10.60 241 299 1.3E-17 T 13-10-2018 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 245 287 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 Pfam PF12833 Helix-turn-helix domain 215 293 2.2E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 Gene3D G3DSA:1.10.10.60 190 240 4.6E-17 T 13-10-2018 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 Pfam PF10114 Sensory domain found in PocR 7 164 8.1E-45 T 13-10-2018 IPR018771 PocR domain CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 SUPERFAMILY SSF46689 191 242 7.62E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 275 1.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_09485 ac194b594dd368a4583d7d9b418d8310 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 275 291 1.5E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_05585 acdb75414ac6c56006043b71057309ed 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 217 234 8.0E-33 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_05585 acdb75414ac6c56006043b71057309ed 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 291 312 8.0E-33 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_05585 acdb75414ac6c56006043b71057309ed 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 197 215 8.0E-33 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_05585 acdb75414ac6c56006043b71057309ed 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 261 276 8.0E-33 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_05585 acdb75414ac6c56006043b71057309ed 356 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 8.0E-33 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_05585 acdb75414ac6c56006043b71057309ed 356 Gene3D G3DSA:3.40.1690.10 206 347 1.1E-40 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CS348_05585 acdb75414ac6c56006043b71057309ed 356 SUPERFAMILY SSF160544 239 342 5.23E-25 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CS348_05585 acdb75414ac6c56006043b71057309ed 356 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 339 2.9E-132 T 13-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 CS348_05585 acdb75414ac6c56006043b71057309ed 356 Pfam PF01312 FlhB HrpN YscU SpaS Family 4 335 6.4E-86 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 328 541 1.6E-52 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 SUPERFAMILY SSF52096 31 287 1.08E-29 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 SUPERFAMILY SSF52096 321 530 5.88E-43 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 PIRSF PIRSF001217 8 618 1.3E-226 T 13-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 609 3.0E-263 T 13-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 Gene3D G3DSA:3.90.226.10 319 541 1.6E-175 T 13-10-2018 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 Gene3D G3DSA:3.90.226.10 97 318 1.6E-175 T 13-10-2018 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 Pfam PF01343 Peptidase family S49 392 543 7.8E-51 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 Pfam PF01343 Peptidase family S49 141 294 1.4E-42 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CS348_13865 33f8b0fbf1f9a1a3f76a99209d3cb144 618 Gene3D G3DSA:3.40.1750.10 189 498 1.6E-175 T 13-10-2018 CS348_14180 603218bf89cc93220cc4e372027d813e 269 PIRSF PIRSF018539 5 268 6.6E-128 T 13-10-2018 IPR003539 Cytolethal distending toxin B GO:0009405 CS348_14180 603218bf89cc93220cc4e372027d813e 269 Gene3D G3DSA:3.60.10.10 23 269 9.5E-87 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_14180 603218bf89cc93220cc4e372027d813e 269 SUPERFAMILY SSF56219 25 263 2.75E-24 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_14180 603218bf89cc93220cc4e372027d813e 269 PRINTS PR01388 Cytolethal distending toxin B signature 189 204 8.1E-34 T 13-10-2018 IPR003539 Cytolethal distending toxin B GO:0009405 CS348_14180 603218bf89cc93220cc4e372027d813e 269 PRINTS PR01388 Cytolethal distending toxin B signature 65 85 8.1E-34 T 13-10-2018 IPR003539 Cytolethal distending toxin B GO:0009405 CS348_14180 603218bf89cc93220cc4e372027d813e 269 PRINTS PR01388 Cytolethal distending toxin B signature 24 45 8.1E-34 T 13-10-2018 IPR003539 Cytolethal distending toxin B GO:0009405 CS348_14180 603218bf89cc93220cc4e372027d813e 269 PRINTS PR01388 Cytolethal distending toxin B signature 144 163 8.1E-34 T 13-10-2018 IPR003539 Cytolethal distending toxin B GO:0009405 CS348_14180 603218bf89cc93220cc4e372027d813e 269 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 30 234 1.0E-10 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CS348_24830 bfd8eed9bb4ef3f0c5fed1a53f13eb92 52 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 3 50 4.0E-15 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_24830 bfd8eed9bb4ef3f0c5fed1a53f13eb92 52 PRINTS PR00281 Hok/Gef cell toxic protein family signature 7 25 1.2E-16 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_24830 bfd8eed9bb4ef3f0c5fed1a53f13eb92 52 PRINTS PR00281 Hok/Gef cell toxic protein family signature 27 49 1.2E-16 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_24830 bfd8eed9bb4ef3f0c5fed1a53f13eb92 52 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 12 31 - T 13-10-2018 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 CS348_24830 bfd8eed9bb4ef3f0c5fed1a53f13eb92 52 Pfam PF01848 Hok/gef family 8 48 1.4E-19 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 SUPERFAMILY SSF81343 2 129 4.58E-36 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 4.3E-40 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 Gene3D G3DSA:1.20.1300.10 1 129 6.0E-49 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 2.3E-30 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 PIRSF PIRSF000178 1 129 3.3E-32 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 13-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16655 b042bc64f4b90d9dc03bcb59f7bce867 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 13-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_25120 30847e24c435d92993248dc6368eb366 197 SUPERFAMILY SSF54523 46 196 7.85E-31 T 13-10-2018 CS348_25120 30847e24c435d92993248dc6368eb366 197 Gene3D G3DSA:3.30.1690.10 45 197 3.7E-41 T 13-10-2018 CS348_25120 30847e24c435d92993248dc6368eb366 197 Pfam PF08805 PilS N terminal 49 196 1.2E-20 T 13-10-2018 IPR014911 Type 4 secretion system, PilS, N-terminal CS348_09315 4690aa9f52361305006b53c481d39850 452 PIRSF PIRSF006060 2 446 4.1E-72 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_09315 4690aa9f52361305006b53c481d39850 452 Gene3D G3DSA:1.20.1740.10 13 448 2.9E-70 T 13-10-2018 CS348_09315 4690aa9f52361305006b53c481d39850 452 Pfam PF13520 Amino acid permease 57 408 1.5E-34 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 Pfam PF02203 Tar ligand binding domain homologue 1 140 6.6E-18 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 Gene3D G3DSA:1.20.120.30 22 195 1.2E-6 T 13-10-2018 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 SUPERFAMILY SSF58104 238 519 2.22E-69 T 13-10-2018 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 SMART SM00304 218 270 5.4E-13 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 Pfam PF00672 HAMP domain 218 266 4.0E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 Gene3D G3DSA:1.10.287.950 218 520 1.9E-84 T 13-10-2018 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 331 486 1.3E-43 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 SMART SM00283 271 518 8.9E-76 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 292 321 7.0E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 396 7.0E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 7.0E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 475 7.0E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 7.0E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_24890 ea5deb30718980da2182dcafdfbf1891 549 SUPERFAMILY SSF47170 25 140 6.93E-8 T 13-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily CS348_20935 df37c12631d7db4531c41648d008c584 343 SUPERFAMILY SSF53697 27 343 3.8E-49 T 13-10-2018 CS348_20935 df37c12631d7db4531c41648d008c584 343 Pfam PF01380 SIS domain 65 142 1.1E-13 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_20935 df37c12631d7db4531c41648d008c584 343 Gene3D G3DSA:3.40.50.10490 9 170 1.4E-41 T 13-10-2018 CS348_20935 df37c12631d7db4531c41648d008c584 343 Gene3D G3DSA:3.40.50.10490 171 331 1.5E-48 T 13-10-2018 CS348_20935 df37c12631d7db4531c41648d008c584 343 PIRSF PIRSF009290 8 343 1.2E-97 T 13-10-2018 IPR024713 Fructosamine deglycase FrlB CS348_12090 8af701992fee0f3cf43c9870b66b5b2c 226 Gene3D G3DSA:1.20.950.20 2 217 1.2E-82 T 13-10-2018 CS348_12090 8af701992fee0f3cf43c9870b66b5b2c 226 Pfam PF02665 Nitrate reductase gamma subunit 6 225 6.5E-78 T 13-10-2018 IPR023234 NarG-like domain CS348_12090 8af701992fee0f3cf43c9870b66b5b2c 226 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 2 226 9.4E-128 T 13-10-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 CS348_12090 8af701992fee0f3cf43c9870b66b5b2c 226 SUPERFAMILY SSF103501 3 225 1.44E-69 T 13-10-2018 IPR036197 NarG-like superfamily CS348_11890 8fa737afc0db158f4b4d688cadb5af86 210 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 195 1.6E-64 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_11890 8fa737afc0db158f4b4d688cadb5af86 210 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 132 154 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_11890 8fa737afc0db158f4b4d688cadb5af86 210 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 30 44 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_11890 8fa737afc0db158f4b4d688cadb5af86 210 Gene3D G3DSA:3.20.20.70 1 210 3.0E-51 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11890 8fa737afc0db158f4b4d688cadb5af86 210 SUPERFAMILY SSF51366 1 205 7.4E-41 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 Gene3D G3DSA:1.10.10.10 7 96 1.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_02995 9e4d24c5750ab285126db7de358b452c 312 SUPERFAMILY SSF46785 7 116 2.08E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_02995 9e4d24c5750ab285126db7de358b452c 312 SUPERFAMILY SSF53850 99 298 2.1E-30 T 13-10-2018 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 4.4E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 Gene3D G3DSA:3.40.190.10 99 287 8.1E-37 T 13-10-2018 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 Gene3D G3DSA:3.40.190.10 172 270 8.1E-37 T 13-10-2018 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 5.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 5.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 5.7E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_02995 9e4d24c5750ab285126db7de358b452c 312 Pfam PF03466 LysR substrate binding domain 99 296 7.3E-32 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_10545 8f2f6f4938f57c55b707e52eced91689 216 Gene3D G3DSA:3.60.21.10 6 216 6.5E-59 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_10545 8f2f6f4938f57c55b707e52eced91689 216 Pfam PF00149 Calcineurin-like phosphoesterase 18 104 6.1E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_10545 8f2f6f4938f57c55b707e52eced91689 216 ProSitePatterns PS00125 Serine/threonine specific protein phosphatases signature. 76 81 - T 13-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CS348_10545 8f2f6f4938f57c55b707e52eced91689 216 SUPERFAMILY SSF56300 17 215 6.99E-45 T 13-10-2018 CS348_17450 8d8b490c493a03bac8ae426efdb34ba2 155 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 13 149 6.8E-37 T 13-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 SUPERFAMILY SSF53697 5 548 1.89E-226 T 13-10-2018 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 2.3E-55 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 2.3E-55 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 2.3E-55 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 2.3E-55 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 2.3E-55 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 2.3E-55 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 Gene3D G3DSA:1.10.1390.10 511 549 1.7E-20 T 13-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 Gene3D G3DSA:3.40.50.10490 290 510 2.1E-113 T 13-10-2018 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 Gene3D G3DSA:3.40.50.10490 1 102 2.0E-34 T 13-10-2018 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 Gene3D G3DSA:3.40.50.10490 103 289 2.1E-92 T 13-10-2018 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 Pfam PF00342 Phosphoglucose isomerase 52 541 1.2E-256 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_22595 587ed9de4cbb981840f7c7fd446c8fe9 549 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 43.034 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 Gene3D G3DSA:3.40.190.10 172 277 6.1E-48 T 13-10-2018 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 18 76 2.3E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 8 307 1.1E-173 T 13-10-2018 IPR011781 D-serine deaminase transcriptional activator CS348_00180 beb5721f8afc80078e6d08838605b59f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 4.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 4.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 4.8E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 SUPERFAMILY SSF53850 99 306 1.81E-31 T 13-10-2018 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 SUPERFAMILY SSF46785 17 123 2.24E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_00180 beb5721f8afc80078e6d08838605b59f 307 Gene3D G3DSA:3.40.190.10 112 303 6.1E-48 T 13-10-2018 CS348_00180 beb5721f8afc80078e6d08838605b59f 307 Pfam PF03466 LysR substrate binding domain 99 306 1.3E-28 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_00180 beb5721f8afc80078e6d08838605b59f 307 Gene3D G3DSA:1.10.10.10 15 102 3.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01450 56ee62a44307a7a2ab6b06e190e98843 438 Gene3D G3DSA:3.40.190.10 29 383 4.4E-172 T 13-10-2018 CS348_01450 56ee62a44307a7a2ab6b06e190e98843 438 SUPERFAMILY SSF53850 25 425 3.83E-78 T 13-10-2018 CS348_01450 56ee62a44307a7a2ab6b06e190e98843 438 Pfam PF13416 Bacterial extracellular solute-binding protein 44 367 2.0E-44 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CS348_01450 56ee62a44307a7a2ab6b06e190e98843 438 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 140 157 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 CS348_01450 56ee62a44307a7a2ab6b06e190e98843 438 Gene3D G3DSA:3.40.190.10 145 423 4.4E-172 T 13-10-2018 CS348_14525 3d28327c5d5beef14e7ffceeca6bb278 317 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 141 1.1E-34 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CS348_14525 3d28327c5d5beef14e7ffceeca6bb278 317 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 191 1.4E-69 T 13-10-2018 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 CS348_14525 3d28327c5d5beef14e7ffceeca6bb278 317 SUPERFAMILY SSF64518 1 315 9.42E-62 T 13-10-2018 CS348_14525 3d28327c5d5beef14e7ffceeca6bb278 317 Gene3D G3DSA:1.20.1330.10 40 263 4.6E-87 T 13-10-2018 CS348_11250 e7cda02056449d5440c27ec07d95aa9b 293 Gene3D G3DSA:3.20.20.140 15 261 5.3E-81 T 13-10-2018 CS348_11250 e7cda02056449d5440c27ec07d95aa9b 293 SUPERFAMILY SSF89550 13 289 7.06E-52 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CS348_11250 e7cda02056449d5440c27ec07d95aa9b 293 Gene3D G3DSA:1.10.150.650 109 180 5.3E-81 T 13-10-2018 CS348_11250 e7cda02056449d5440c27ec07d95aa9b 293 SMART SM00481 14 81 4.6E-18 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CS348_11250 e7cda02056449d5440c27ec07d95aa9b 293 Pfam PF02811 PHP domain 15 169 6.1E-8 T 13-10-2018 IPR004013 PHP domain GO:0003824 CS348_04755 c63724ec8c11fc08dcab5d3c4ce7c12a 173 Gene3D G3DSA:3.40.50.360 1 173 1.9E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_04755 c63724ec8c11fc08dcab5d3c4ce7c12a 173 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 CS348_04755 c63724ec8c11fc08dcab5d3c4ce7c12a 173 SUPERFAMILY SSF52218 1 168 3.42E-45 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_04755 c63724ec8c11fc08dcab5d3c4ce7c12a 173 PIRSF PIRSF038996 1 172 2.9E-54 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 CS348_04755 c63724ec8c11fc08dcab5d3c4ce7c12a 173 Pfam PF00258 Flavodoxin 5 160 1.4E-26 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CS348_04755 c63724ec8c11fc08dcab5d3c4ce7c12a 173 TIGRFAM TIGR01752 flav_long: flavodoxin 3 168 3.2E-68 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 Gene3D G3DSA:3.20.20.80 237 589 6.0E-99 T 13-10-2018 CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 Pfam PF01055 Glycosyl hydrolases family 31 218 670 3.7E-115 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 SUPERFAMILY SSF74650 2 224 8.79E-42 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 Gene3D G3DSA:2.60.40.1760 4 236 7.7E-48 T 13-10-2018 CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 SUPERFAMILY SSF51011 588 669 4.03E-24 T 13-10-2018 CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 SUPERFAMILY SSF51445 226 585 1.45E-66 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_20155 4b9891b7be6bbd645153480fb396e9a1 679 Gene3D G3DSA:2.60.40.1180 590 668 1.0E-28 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 SUPERFAMILY SSF46548 214 341 2.51E-12 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 Pfam PF10531 SLBB domain 174 219 4.1E-10 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 PIRSF PIRSF036408 12 450 1.3E-196 T 13-10-2018 IPR017054 Propanediol utilization protein, PduS, predicted CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 Pfam PF13375 RnfC Barrel sandwich hybrid domain 381 447 4.7E-13 T 13-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 SUPERFAMILY SSF142019 9 178 1.16E-46 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 Pfam PF13534 4Fe-4S dicluster domain 264 324 8.8E-8 T 13-10-2018 CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 21 160 3.0E-38 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 Gene3D G3DSA:3.40.50.11540 26 167 1.6E-13 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09400 d43c5e5a954e25fd79ce618167b15adb 451 Gene3D G3DSA:3.30.70.20 225 328 4.8E-5 T 13-10-2018 CS348_06475 f125b850bc725a2eb1eefd1cb1880ef8 112 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 91 3.9E-22 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CS348_06475 f125b850bc725a2eb1eefd1cb1880ef8 112 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 2.4E-35 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CS348_06475 f125b850bc725a2eb1eefd1cb1880ef8 112 Gene3D G3DSA:3.30.160.100 1 107 1.1E-37 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CS348_06475 f125b850bc725a2eb1eefd1cb1880ef8 112 SUPERFAMILY SSF69754 3 108 2.75E-33 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CS348_09210 7918cddd3061c2d3dc7abac933941b14 373 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 346 3.3E-160 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_09210 7918cddd3061c2d3dc7abac933941b14 373 Gene3D G3DSA:3.40.50.720 5 337 3.2E-166 T 13-10-2018 CS348_09210 7918cddd3061c2d3dc7abac933941b14 373 SUPERFAMILY SSF51735 3 352 6.08E-90 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09210 7918cddd3061c2d3dc7abac933941b14 373 Gene3D G3DSA:3.90.25.10 193 351 3.2E-166 T 13-10-2018 CS348_09210 7918cddd3061c2d3dc7abac933941b14 373 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 356 56.055 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 CS348_09210 7918cddd3061c2d3dc7abac933941b14 373 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 353 1.0E-175 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 CS348_06920 ac976a20fca068986b9e24d24c77d325 287 Gene3D G3DSA:3.30.70.20 12 80 3.4E-13 T 13-10-2018 CS348_06920 ac976a20fca068986b9e24d24c77d325 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 52 63 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_06920 ac976a20fca068986b9e24d24c77d325 287 Pfam PF00037 4Fe-4S binding domain 46 68 3.2E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_06920 ac976a20fca068986b9e24d24c77d325 287 Pfam PF13187 4Fe-4S dicluster domain 193 236 2.2E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_06920 ac976a20fca068986b9e24d24c77d325 287 Gene3D G3DSA:3.30.70.20 188 238 1.1E-12 T 13-10-2018 CS348_06920 ac976a20fca068986b9e24d24c77d325 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 222 233 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_06920 ac976a20fca068986b9e24d24c77d325 287 SUPERFAMILY SSF54862 174 240 2.99E-17 T 13-10-2018 CS348_06920 ac976a20fca068986b9e24d24c77d325 287 SUPERFAMILY SSF54862 25 71 7.61E-15 T 13-10-2018 CS348_01430 2dd059ab099d221901cfd7937f154b78 255 Pfam PF00005 ABC transporter 21 181 3.2E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01430 2dd059ab099d221901cfd7937f154b78 255 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01430 2dd059ab099d221901cfd7937f154b78 255 Gene3D G3DSA:3.40.50.300 4 253 2.5E-61 T 13-10-2018 CS348_01430 2dd059ab099d221901cfd7937f154b78 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 5.1E-11 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CS348_01430 2dd059ab099d221901cfd7937f154b78 255 SMART SM00382 30 230 1.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01430 2dd059ab099d221901cfd7937f154b78 255 SUPERFAMILY SSF52540 4 253 1.36E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16020 499bd93400944d443778f7f26e8ca8db 165 Pfam PF07995 Glucose / Sorbosone dehydrogenase 51 152 1.4E-33 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase CS348_16020 499bd93400944d443778f7f26e8ca8db 165 Gene3D G3DSA:2.120.10.30 45 156 1.4E-33 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CS348_16020 499bd93400944d443778f7f26e8ca8db 165 SUPERFAMILY SSF50952 58 106 5.36E-12 T 13-10-2018 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 CS348_04925 6806359f164c1997103e3563f84cb521 311 SUPERFAMILY SSF53850 93 298 4.03E-42 T 13-10-2018 CS348_04925 6806359f164c1997103e3563f84cb521 311 SUPERFAMILY SSF46785 4 114 1.09E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04925 6806359f164c1997103e3563f84cb521 311 Pfam PF03466 LysR substrate binding domain 92 294 2.9E-42 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_04925 6806359f164c1997103e3563f84cb521 311 Gene3D G3DSA:3.40.190.290 95 298 7.0E-39 T 13-10-2018 CS348_04925 6806359f164c1997103e3563f84cb521 311 Gene3D G3DSA:1.10.10.10 4 94 3.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04925 6806359f164c1997103e3563f84cb521 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 7.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04925 6806359f164c1997103e3563f84cb521 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 7.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04925 6806359f164c1997103e3563f84cb521 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 7.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04925 6806359f164c1997103e3563f84cb521 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.7E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_21940 77a9a573cd9ca483476dd34853a1bd83 44 Pfam PF08085 Entericidin EcnA/B family 23 43 1.6E-9 T 13-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 CS348_06205 45c2ff850e6a81dd8a09165c5101bd56 311 SUPERFAMILY SSF53474 38 297 1.0E-57 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_06205 45c2ff850e6a81dd8a09165c5101bd56 311 Pfam PF00756 Putative esterase 61 298 3.1E-9 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CS348_06205 45c2ff850e6a81dd8a09165c5101bd56 311 Gene3D G3DSA:3.40.50.1820 37 311 1.1E-74 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 Pfam PF01207 Dihydrouridine synthase (Dus) 17 324 5.7E-98 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 9 330 53.1 T 13-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 14 329 2.7E-171 T 13-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 Gene3D G3DSA:3.20.20.70 12 253 1.8E-71 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 PIRSF PIRSF006621 3 329 1.5E-72 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 Gene3D G3DSA:1.20.120.1460 260 332 5.2E-27 T 13-10-2018 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_22480 f8ac95a248aceac0df064c3197642f2d 332 SUPERFAMILY SSF51395 14 324 7.73E-71 T 13-10-2018 CS348_10740 bf57a1aac27178719802a9d907e0cf3e 88 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 3.9E-25 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CS348_10740 bf57a1aac27178719802a9d907e0cf3e 88 Gene3D G3DSA:3.30.1070.10 31 88 1.2E-30 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 CS348_10740 bf57a1aac27178719802a9d907e0cf3e 88 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 19.902 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CS348_10740 bf57a1aac27178719802a9d907e0cf3e 88 SUPERFAMILY SSF55229 32 85 1.31E-18 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 CS348_10740 bf57a1aac27178719802a9d907e0cf3e 88 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.3E-36 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 6.6E-240 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.0E-18 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 SUPERFAMILY SSF52540 6 219 2.02E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 9.7E-34 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 SUPERFAMILY SSF50465 298 393 2.76E-36 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 SUPERFAMILY SSF50447 205 301 1.34E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 200 5.6E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.6E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Gene3D G3DSA:2.40.30.10 338 393 1.1E-29 T 13-10-2018 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Gene3D G3DSA:2.40.30.10 206 334 1.4E-53 T 13-10-2018 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.241 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 Gene3D G3DSA:3.40.50.300 1 203 7.3E-70 T 13-10-2018 CS348_22875 81eec51fa93afdb25636cd17bb84e127 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_10095 19d418a4088a7b2738710448c0a6028f 473 TIGRFAM TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 3 451 6.5E-180 T 13-10-2018 IPR012766 Alpha,alpha-trehalose-phosphate synthase GO:0003825|GO:0005992 KEGG: 00500+2.4.1.15 CS348_10095 19d418a4088a7b2738710448c0a6028f 473 Gene3D G3DSA:3.40.50.2000 20 447 1.5E-168 T 13-10-2018 CS348_10095 19d418a4088a7b2738710448c0a6028f 473 Pfam PF00982 Glycosyltransferase family 20 17 451 1.5E-145 T 13-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 CS348_10095 19d418a4088a7b2738710448c0a6028f 473 SUPERFAMILY SSF53756 2 453 8.79E-145 T 13-10-2018 CS348_10095 19d418a4088a7b2738710448c0a6028f 473 Gene3D G3DSA:3.40.50.2000 229 436 1.5E-168 T 13-10-2018 CS348_19255 20a9441e35ad3419a6f9f17fd38f1960 433 Gene3D G3DSA:1.20.1250.20 10 428 6.2E-52 T 13-10-2018 CS348_19255 20a9441e35ad3419a6f9f17fd38f1960 433 Pfam PF00083 Sugar (and other) transporter 16 428 2.4E-22 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_19255 20a9441e35ad3419a6f9f17fd38f1960 433 SUPERFAMILY SSF103473 7 426 4.19E-49 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 260 305 4.5E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 159 9.4E-26 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 Gene3D G3DSA:2.10.109.10 80 304 7.7E-82 T 13-10-2018 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 ProSitePatterns PS00761 Signal peptidases I signature 3. 269 282 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 4.1E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 4.1E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 264 283 4.1E-25 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 Gene3D G3DSA:2.170.230.10 155 263 7.7E-82 T 13-10-2018 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 Pfam PF10502 Signal peptidase, peptidase S26 257 302 3.4E-7 T 13-10-2018 IPR019533 Peptidase S26 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 SUPERFAMILY SSF51306 78 323 3.66E-85 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 13-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 CS348_06635 25fb08f8d416e67fe9729fdc514d433e 324 Pfam PF00717 Peptidase S24-like 86 159 1.7E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CS348_01850 c9b73d94c2816acb50d358a803904515 210 SUPERFAMILY SSF51206 8 136 1.03E-35 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CS348_01850 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 13-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site CS348_01850 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 13-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 CS348_01850 c9b73d94c2816acb50d358a803904515 210 Gene3D G3DSA:2.60.120.10 10 138 5.8E-45 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_01850 c9b73d94c2816acb50d358a803904515 210 SMART SM00419 160 208 4.5E-17 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_01850 c9b73d94c2816acb50d358a803904515 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_01850 c9b73d94c2816acb50d358a803904515 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_01850 c9b73d94c2816acb50d358a803904515 210 SMART SM00100 2 122 1.1E-26 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CS348_01850 c9b73d94c2816acb50d358a803904515 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CS348_01850 c9b73d94c2816acb50d358a803904515 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 13-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site CS348_01850 c9b73d94c2816acb50d358a803904515 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_01850 c9b73d94c2816acb50d358a803904515 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_01850 c9b73d94c2816acb50d358a803904515 210 Gene3D G3DSA:1.10.10.10 139 207 1.3E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 313 389 4.0E-19 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 Hamap MF_01587 DNA ligase B [ligB]. 3 559 51.581 T 13-10-2018 IPR020923 DNA ligase B GO:0003911|GO:0006259 CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 30 287 2.1E-27 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 125 154 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 322 337 - T 13-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 SUPERFAMILY SSF50249 311 390 1.16E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 SUPERFAMILY SSF47781 401 556 3.91E-20 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 SMART SM00532 29 426 2.0E-93 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 Gene3D G3DSA:2.40.50.140 311 382 1.2E-12 T 13-10-2018 CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 SUPERFAMILY SSF56091 25 307 6.05E-69 T 13-10-2018 CS348_00515 c8d86e03f4446d615c4d76b9a6c68b8b 561 Gene3D G3DSA:3.30.470.90 90 308 4.0E-33 T 13-10-2018 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 Pfam PF02817 e3 binding domain 114 147 1.5E-11 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 SUPERFAMILY SSF47005 106 152 4.58E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 SUPERFAMILY SSF52777 172 401 4.89E-90 T 13-10-2018 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 Pfam PF00364 Biotin-requiring enzyme 5 76 3.0E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 Gene3D G3DSA:2.40.50.100 2 81 3.5E-22 T 13-10-2018 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 172 400 9.6E-82 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 SUPERFAMILY SSF51230 2 95 2.75E-24 T 13-10-2018 IPR011053 Single hybrid motif CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 Gene3D G3DSA:3.30.559.10 170 402 7.0E-98 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 402 6.0E-193 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CS348_16630 9c1c35100c7d880811491e661f5c1be6 402 Gene3D G3DSA:4.10.320.10 103 152 1.4E-24 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CS348_21350 14f42b357da1b05d46d8bc4114e588d6 154 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 153 1.7E-64 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CS348_21350 14f42b357da1b05d46d8bc4114e588d6 154 SUPERFAMILY SSF102114 16 117 8.04E-6 T 13-10-2018 CS348_21350 14f42b357da1b05d46d8bc4114e588d6 154 Gene3D G3DSA:3.20.20.70 2 154 2.8E-21 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_21350 14f42b357da1b05d46d8bc4114e588d6 154 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CS348_21350 14f42b357da1b05d46d8bc4114e588d6 154 PIRSF PIRSF000368 1 154 3.9E-60 T 13-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 CS348_21350 14f42b357da1b05d46d8bc4114e588d6 154 Pfam PF13353 4Fe-4S single cluster domain 12 151 1.9E-51 T 13-10-2018 CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 66 157 8.4E-8 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 Gene3D G3DSA:3.20.20.120 157 394 1.3E-205 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 SUPERFAMILY SSF54826 41 158 2.46E-23 T 13-10-2018 CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 Hamap MF_01288 L-rhamnonate dehydratase [rhmD]. 1 401 80.661 T 13-10-2018 IPR023444 L-rhamnonate dehydratase GO:0050032 KEGG: 00051+4.2.1.90|MetaCyc: PWY-6713|MetaCyc: PWY-6714 CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 SMART SM00922 163 269 1.2E-8 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 Pfam PF13378 Enolase C-terminal domain-like 183 392 1.1E-37 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 SUPERFAMILY SSF51604 145 399 3.67E-56 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 132 157 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CS348_08190 11284b1172d6ea1167cbee49abfce0d2 401 Gene3D G3DSA:3.30.390.10 2 156 1.3E-205 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Pfam PF04408 Helicase associated domain (HA2) 404 459 7.7E-9 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 SUPERFAMILY SSF52540 32 353 2.8E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 SMART SM00490 241 343 7.2E-13 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Gene3D G3DSA:1.20.120.1080 388 493 5.4E-6 T 13-10-2018 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Gene3D G3DSA:3.40.50.300 195 362 1.1E-49 T 13-10-2018 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Pfam PF08482 ATP-dependent helicase C-terminal 679 811 1.2E-52 T 13-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Pfam PF00271 Helicase conserved C-terminal domain 219 342 3.5E-10 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Pfam PF00270 DEAD/DEAH box helicase 34 176 1.1E-9 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 PIRSF PIRSF005496 15 824 0.0 T 13-10-2018 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 SMART SM00487 14 201 9.5E-21 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 Gene3D G3DSA:3.40.50.300 5 194 2.0E-53 T 13-10-2018 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 SMART SM00847 403 491 1.5E-9 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 CS348_19340 d63a7aea0efcb717299e1afd2e056685 824 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 19 823 0.0 T 13-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 CS348_18625 da93f4195fd6f62d28a7c594243fd82b 503 Gene3D G3DSA:1.20.1600.10 79 493 5.4E-131 T 13-10-2018 CS348_18625 da93f4195fd6f62d28a7c594243fd82b 503 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 37 493 2.4E-114 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 CS348_18625 da93f4195fd6f62d28a7c594243fd82b 503 Gene3D G3DSA:2.20.200.10 125 382 5.4E-131 T 13-10-2018 CS348_18625 da93f4195fd6f62d28a7c594243fd82b 503 SUPERFAMILY SSF56954 26 495 3.27E-106 T 13-10-2018 CS348_18625 da93f4195fd6f62d28a7c594243fd82b 503 Pfam PF02321 Outer membrane efflux protein 313 491 2.4E-25 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_18625 da93f4195fd6f62d28a7c594243fd82b 503 Pfam PF02321 Outer membrane efflux protein 88 278 1.3E-27 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_20830 31af3fa882f4890bae44dacd251da46b 205 Pfam PF04972 BON domain 139 204 1.5E-19 T 13-10-2018 IPR007055 BON domain CS348_20830 31af3fa882f4890bae44dacd251da46b 205 Pfam PF04972 BON domain 59 126 1.9E-20 T 13-10-2018 IPR007055 BON domain CS348_20830 31af3fa882f4890bae44dacd251da46b 205 SMART SM00749 143 205 9.1E-9 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria CS348_20830 31af3fa882f4890bae44dacd251da46b 205 SMART SM00749 64 127 4.8E-13 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria CS348_18460 58d7144df86c1f487fdaad7147725032 403 Gene3D G3DSA:1.20.1250.20 250 402 3.1E-19 T 13-10-2018 CS348_18460 58d7144df86c1f487fdaad7147725032 403 Gene3D G3DSA:1.20.1250.20 3 227 2.9E-42 T 13-10-2018 CS348_18460 58d7144df86c1f487fdaad7147725032 403 Pfam PF07690 Major Facilitator Superfamily 11 302 3.7E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_18460 58d7144df86c1f487fdaad7147725032 403 SUPERFAMILY SSF103473 214 401 3.27E-29 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18460 58d7144df86c1f487fdaad7147725032 403 PRINTS PR01035 Tetracycline resistance protein signature 136 158 5.2E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_18460 58d7144df86c1f487fdaad7147725032 403 PRINTS PR01035 Tetracycline resistance protein signature 341 364 5.2E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_18460 58d7144df86c1f487fdaad7147725032 403 PRINTS PR01035 Tetracycline resistance protein signature 79 103 5.2E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_18460 58d7144df86c1f487fdaad7147725032 403 PRINTS PR01035 Tetracycline resistance protein signature 17 33 5.2E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_18460 58d7144df86c1f487fdaad7147725032 403 PRINTS PR01035 Tetracycline resistance protein signature 106 127 5.2E-11 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 CS348_18460 58d7144df86c1f487fdaad7147725032 403 SUPERFAMILY SSF103473 6 239 1.27E-40 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 SUPERFAMILY SSF53732 2 464 9.55E-168 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 465 1.7E-276 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 Gene3D G3DSA:3.30.499.20 4 286 3.6E-100 T 13-10-2018 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 Pfam PF00330 Aconitase family (aconitate hydratase) 7 457 5.1E-160 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 Gene3D G3DSA:3.30.499.10 328 466 4.2E-51 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 466 62.246 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 82 95 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 209 222 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 286 300 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 119 132 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 343 354 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 399 412 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 133 148 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 108 116 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_19780 7cb622b667ce0b406dab3635f0b71ddd 466 PRINTS PR00415 Aconitase family signature 195 208 1.6E-50 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_09160 fc636a1301e60ecf040490cd6db818d6 406 Gene3D G3DSA:3.40.50.2000 13 218 2.8E-10 T 13-10-2018 CS348_09160 fc636a1301e60ecf040490cd6db818d6 406 TIGRFAM TIGR04005 wcaL: colanic acid biosynthesis glycosyltransferase WcaL 1 406 1.8E-265 T 13-10-2018 IPR023884 Colanic acid biosynthesis, glycosyl transferase, WcaL CS348_09160 fc636a1301e60ecf040490cd6db818d6 406 Gene3D G3DSA:3.40.50.2000 219 390 2.3E-38 T 13-10-2018 CS348_09160 fc636a1301e60ecf040490cd6db818d6 406 Pfam PF13439 Glycosyltransferase Family 4 15 210 2.2E-8 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CS348_09160 fc636a1301e60ecf040490cd6db818d6 406 Pfam PF00534 Glycosyl transferases group 1 213 383 1.5E-40 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_09160 fc636a1301e60ecf040490cd6db818d6 406 SUPERFAMILY SSF53756 15 405 3.1E-59 T 13-10-2018 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 4.3E-46 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 SUPERFAMILY SSF53671 4 333 7.05E-98 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 Gene3D G3DSA:3.40.50.1370 5 329 1.1E-141 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 1.6E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 1.6E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 1.6E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 1.6E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 3.9E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 3.9E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 3.9E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 3.9E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 3.9E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 81.435 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 Gene3D G3DSA:3.40.50.1370 151 319 1.1E-141 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 1.1E-130 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21280 475100d762b646c4caf132fcea1f7aa5 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 330 3.6E-53 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CS348_25635 05d2682642d4bdcdeb430c4e0c3af620 346 Pfam PF13551 Winged helix-turn helix 11 73 3.5E-19 T 13-10-2018 CS348_25635 05d2682642d4bdcdeb430c4e0c3af620 346 Gene3D G3DSA:3.30.420.10 161 330 4.0E-14 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_25635 05d2682642d4bdcdeb430c4e0c3af620 346 Pfam PF00665 Integrase core domain 161 283 7.5E-18 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CS348_25635 05d2682642d4bdcdeb430c4e0c3af620 346 SUPERFAMILY SSF46689 18 114 2.51E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_25635 05d2682642d4bdcdeb430c4e0c3af620 346 SUPERFAMILY SSF53098 160 333 5.56E-38 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 Gene3D G3DSA:3.40.50.300 10 274 1.7E-106 T 13-10-2018 CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 Gene3D G3DSA:1.10.486.10 382 538 3.9E-143 T 13-10-2018 CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 13-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 2.3E-75 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 Gene3D G3DSA:3.40.50.300 281 636 3.9E-143 T 13-10-2018 CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 Gene3D G3DSA:1.10.10.160 114 187 1.7E-106 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 SUPERFAMILY SSF52540 7 642 2.79E-182 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24055 0f43074f7307b2e6daaa8cab360d84c2 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 2.4E-75 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CS348_05200 ec8fe55ce53a5a3be5bf689fde512f74 452 Gene3D G3DSA:1.20.1250.20 241 442 5.9E-33 T 13-10-2018 CS348_05200 ec8fe55ce53a5a3be5bf689fde512f74 452 PIRSF PIRSF002808 3 449 4.6E-44 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_05200 ec8fe55ce53a5a3be5bf689fde512f74 452 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 27 436 4.9E-161 T 13-10-2018 CS348_05200 ec8fe55ce53a5a3be5bf689fde512f74 452 Gene3D G3DSA:1.20.1250.20 11 212 2.4E-46 T 13-10-2018 CS348_05200 ec8fe55ce53a5a3be5bf689fde512f74 452 Pfam PF07690 Major Facilitator Superfamily 25 318 6.4E-49 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_05200 ec8fe55ce53a5a3be5bf689fde512f74 452 SUPERFAMILY SSF103473 11 444 8.89E-83 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_09095 53cf20824f082a32e350343575df98a3 405 TIGRFAM TIGR04015 WcaC: colanic acid biosynthesis glycosyltransferase WcaC 1 405 8.9E-268 T 13-10-2018 IPR023916 Colanic acid biosynthesis, glycosyl transferase, WcaC CS348_09095 53cf20824f082a32e350343575df98a3 405 SUPERFAMILY SSF53756 11 364 1.62E-21 T 13-10-2018 CS348_09095 53cf20824f082a32e350343575df98a3 405 Pfam PF13439 Glycosyltransferase Family 4 60 224 1.7E-8 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CS348_09095 53cf20824f082a32e350343575df98a3 405 Gene3D G3DSA:3.40.50.2000 237 371 7.3E-9 T 13-10-2018 CS348_21625 6cdea7056b59562ffe010118e58587d1 469 Gene3D G3DSA:1.20.1740.10 18 467 3.5E-61 T 13-10-2018 CS348_21625 6cdea7056b59562ffe010118e58587d1 469 PIRSF PIRSF006060 1 468 2.4E-69 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_21625 6cdea7056b59562ffe010118e58587d1 469 ProSitePatterns PS00218 Amino acid permeases signature. 52 82 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_21625 6cdea7056b59562ffe010118e58587d1 469 Pfam PF00324 Amino acid permease 27 464 2.1E-121 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_14960 4b08f51baa2ef0592c733fdf46b46865 263 Hamap MF_01292 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase [hpcH]. 1 263 72.14 T 13-10-2018 IPR023701 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase, Enterobacteriales GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 CS348_14960 4b08f51baa2ef0592c733fdf46b46865 263 SUPERFAMILY SSF51621 2 250 2.83E-84 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_14960 4b08f51baa2ef0592c733fdf46b46865 263 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 15 240 1.1E-65 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_14960 4b08f51baa2ef0592c733fdf46b46865 263 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 3 250 1.0E-130 T 13-10-2018 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 CS348_14960 4b08f51baa2ef0592c733fdf46b46865 263 Gene3D G3DSA:3.20.20.60 1 262 3.8E-97 T 13-10-2018 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 Pfam PF04542 Sigma-70 region 2 25 91 3.3E-17 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 Gene3D G3DSA:1.10.10.10 121 191 1.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 Gene3D G3DSA:1.10.1740.10 1 120 2.3E-49 T 13-10-2018 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 13-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 SUPERFAMILY SSF88659 122 183 9.53E-19 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 Pfam PF08281 Sigma-70, region 4 129 180 4.5E-19 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 SUPERFAMILY SSF88946 2 105 2.98E-31 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 6.8E-99 T 13-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_06605 f3245c5f3693cc42af24c36c259d8cb7 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 183 6.2E-31 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CS348_14825 600edbfa82a7d88fa0218101edd7ef81 226 SUPERFAMILY SSF51366 13 224 1.7E-53 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_14825 600edbfa82a7d88fa0218101edd7ef81 226 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 11 225 36.626 T 13-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 CS348_14825 600edbfa82a7d88fa0218101edd7ef81 226 Gene3D G3DSA:3.20.20.70 1 226 4.2E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_14825 600edbfa82a7d88fa0218101edd7ef81 226 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 35 225 1.2E-84 T 13-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 Pfam PF00990 Diguanylate cyclase, GGDEF domain 247 394 7.1E-11 T 13-10-2018 IPR000160 GGDEF domain CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 SMART SM00267 231 398 2.1E-32 T 13-10-2018 IPR000160 GGDEF domain CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 Gene3D G3DSA:3.20.20.450 413 665 6.6E-84 T 13-10-2018 IPR035919 EAL domain superfamily CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 SMART SM00052 408 653 1.2E-111 T 13-10-2018 IPR001633 EAL domain CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 36 154 1.6E-50 T 13-10-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 Pfam PF00563 EAL domain 415 648 2.8E-64 T 13-10-2018 IPR001633 EAL domain CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 SUPERFAMILY SSF55073 249 400 3.14E-17 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 Gene3D G3DSA:3.30.70.270 242 412 1.2E-17 T 13-10-2018 CS348_01160 3766864d14e22aaeb2af4bfe25909e77 668 SUPERFAMILY SSF141868 413 661 1.31E-76 T 13-10-2018 IPR035919 EAL domain superfamily CS348_05950 6e818fb7ef922d52444c991865d63582 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 121 183 9.4E-15 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_05950 6e818fb7ef922d52444c991865d63582 188 Gene3D G3DSA:3.40.50.1000 7 185 5.6E-46 T 13-10-2018 IPR023214 HAD superfamily CS348_05950 6e818fb7ef922d52444c991865d63582 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 1.8E-26 T 13-10-2018 CS348_05950 6e818fb7ef922d52444c991865d63582 188 Gene3D G3DSA:1.10.150.240 18 89 5.6E-46 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_05950 6e818fb7ef922d52444c991865d63582 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 3.4E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_05950 6e818fb7ef922d52444c991865d63582 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 3.4E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_05950 6e818fb7ef922d52444c991865d63582 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 174 187 3.4E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_05950 6e818fb7ef922d52444c991865d63582 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 3.4E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_05950 6e818fb7ef922d52444c991865d63582 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 2.8E-62 T 13-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase CS348_05950 6e818fb7ef922d52444c991865d63582 188 SUPERFAMILY SSF56784 5 185 3.07E-44 T 13-10-2018 IPR036412 HAD-like superfamily CS348_13130 e11af1177eff5f5192986816b3dd1602 242 SMART SM00422 3 72 2.5E-26 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_13130 e11af1177eff5f5192986816b3dd1602 242 SUPERFAMILY SSF46955 3 92 1.01E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_13130 e11af1177eff5f5192986816b3dd1602 242 Pfam PF13411 MerR HTH family regulatory protein 3 70 5.4E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_13130 e11af1177eff5f5192986816b3dd1602 242 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 29 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_13130 e11af1177eff5f5192986816b3dd1602 242 Gene3D G3DSA:1.10.1660.10 1 71 5.6E-24 T 13-10-2018 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 SUPERFAMILY SSF109604 306 492 5.02E-44 T 13-10-2018 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 Pfam PF02541 Ppx/GppA phosphatase family 20 300 1.3E-99 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 1 493 52.908 T 13-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 PIRSF PIRSF001267 1 493 1.3E-182 T 13-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 SUPERFAMILY SSF53067 131 299 1.22E-40 T 13-10-2018 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 Gene3D G3DSA:1.10.3210.10 304 493 3.9E-48 T 13-10-2018 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 Gene3D G3DSA:3.30.420.150 111 288 1.1E-84 T 13-10-2018 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 SUPERFAMILY SSF53067 6 127 8.74E-37 T 13-10-2018 CS348_24230 d1712a263f0d1d27f932edad4cf5d409 493 Gene3D G3DSA:3.30.420.40 8 296 1.1E-84 T 13-10-2018 CS348_10795 3a94b7107217c53680735e1a79497da8 239 Pfam PF07840 FadR C-terminal domain 72 234 6.3E-73 T 13-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 CS348_10795 3a94b7107217c53680735e1a79497da8 239 SMART SM00345 12 71 5.9E-23 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_10795 3a94b7107217c53680735e1a79497da8 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 235 3.5E-123 T 13-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 CS348_10795 3a94b7107217c53680735e1a79497da8 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_10795 3a94b7107217c53680735e1a79497da8 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_10795 3a94b7107217c53680735e1a79497da8 239 Gene3D G3DSA:1.20.120.530 80 239 7.4E-51 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_10795 3a94b7107217c53680735e1a79497da8 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 162.119 T 13-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 CS348_10795 3a94b7107217c53680735e1a79497da8 239 SUPERFAMILY SSF46785 11 88 2.48E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_10795 3a94b7107217c53680735e1a79497da8 239 SUPERFAMILY SSF48008 79 230 1.96E-64 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_10795 3a94b7107217c53680735e1a79497da8 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.8E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_10795 3a94b7107217c53680735e1a79497da8 239 Gene3D G3DSA:1.10.10.10 1 79 4.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 SUPERFAMILY SSF46689 4 98 3.88E-27 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.769 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 Gene3D G3DSA:1.10.10.60 1 98 1.1E-35 T 13-10-2018 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 7.6E-35 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 7.6E-35 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 7.6E-35 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 7.6E-35 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_02285 e9ff87b2f6cbc07850e519f60813e1f6 98 PIRSF PIRSF002097 1 98 4.9E-46 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CS348_10210 4851615235790d2e308a020f976c473f 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 321 2.9E-148 T 13-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 CS348_10210 4851615235790d2e308a020f976c473f 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 2.3E-170 T 13-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like CS348_10210 4851615235790d2e308a020f976c473f 323 SUPERFAMILY SSF53335 91 323 7.4E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_10210 4851615235790d2e308a020f976c473f 323 Gene3D G3DSA:3.40.50.150 88 323 1.6E-20 T 13-10-2018 CS348_10210 4851615235790d2e308a020f976c473f 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 54.785 T 13-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 Pfam PF07687 Peptidase dimerisation domain 178 288 3.7E-25 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 Hamap MF_01108 Acetylornithine deacetylase [argE]. 3 382 66.929 T 13-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 110 147 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 Gene3D G3DSA:3.40.630.10 13 363 1.8E-79 T 13-10-2018 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 Pfam PF01546 Peptidase family M20/M25/M40 76 377 4.4E-32 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 Gene3D G3DSA:3.30.70.360 181 304 1.8E-79 T 13-10-2018 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 SUPERFAMILY SSF53187 4 381 4.29E-57 T 13-10-2018 CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 SUPERFAMILY SSF55031 181 293 8.67E-21 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CS348_23015 5a6e345becf8feebbb960e0208bb8314 383 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 377 8.2E-169 T 13-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 Gene3D G3DSA:3.40.50.2300 102 278 6.8E-95 T 13-10-2018 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 Pfam PF12833 Helix-turn-helix domain 309 385 2.8E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 SUPERFAMILY SSF46689 338 387 3.49E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 SMART SM00342 301 384 1.1E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 Gene3D G3DSA:3.40.50.2300 8 269 6.8E-95 T 13-10-2018 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 Pfam PF13377 Periplasmic binding protein-like domain 113 277 4.0E-37 T 13-10-2018 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 SUPERFAMILY SSF53822 10 298 1.96E-45 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_00900 d076429e6d1fb969a1ffacf306129573 392 SUPERFAMILY SSF46689 284 332 8.36E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 353 368 3.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 368 384 3.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_00900 d076429e6d1fb969a1ffacf306129573 392 Gene3D G3DSA:1.10.10.60 281 392 2.2E-30 T 13-10-2018 CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 Gene3D G3DSA:3.30.565.10 301 450 8.0E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 439 3.4E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 449 7.7E-100 T 13-10-2018 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 237 301 8.6E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 SUPERFAMILY SSF55874 291 449 1.31E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 SUPERFAMILY SSF47384 219 303 2.94E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 SMART SM00388 236 302 8.4E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 Gene3D G3DSA:1.10.287.130 186 300 2.9E-15 T 13-10-2018 CS348_15020 34395b2f1adde21c9ab5269a87b04660 454 SMART SM00387 345 452 2.9E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17125 2faf17d68338ae528528b54e8ea7b8b9 302 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 12 299 2.8E-134 T 13-10-2018 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 CS348_17125 2faf17d68338ae528528b54e8ea7b8b9 302 SUPERFAMILY SSF51621 11 244 9.77E-62 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_17125 2faf17d68338ae528528b54e8ea7b8b9 302 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 15 234 6.8E-83 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_17125 2faf17d68338ae528528b54e8ea7b8b9 302 PIRSF PIRSF015582 1 302 5.6E-75 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like CS348_17125 2faf17d68338ae528528b54e8ea7b8b9 302 Gene3D G3DSA:3.20.20.60 2 299 1.8E-90 T 13-10-2018 CS348_03980 ee538feb3e54a7c4b6f459c339bb38b9 718 TIGRFAM TIGR03743 SXT_TraD: conjugative coupling factor TraD, SXT/TOL subfamily 7 653 5.4E-255 T 13-10-2018 IPR022458 Conjugative coupling factor TraG/TraD CS348_03980 ee538feb3e54a7c4b6f459c339bb38b9 718 SUPERFAMILY SSF52540 145 654 1.06E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_03980 ee538feb3e54a7c4b6f459c339bb38b9 718 Gene3D G3DSA:3.40.50.300 412 660 2.7E-26 T 13-10-2018 CS348_03980 ee538feb3e54a7c4b6f459c339bb38b9 718 Gene3D G3DSA:3.40.50.300 160 315 6.4E-10 T 13-10-2018 CS348_03980 ee538feb3e54a7c4b6f459c339bb38b9 718 Pfam PF12696 TraM recognition site of TraD and TraG 504 632 5.7E-13 T 13-10-2018 IPR032689 TraD/TraG, TraM recognition site CS348_03980 ee538feb3e54a7c4b6f459c339bb38b9 718 TIGRFAM TIGR03754 conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class 7 653 0.0 T 13-10-2018 IPR022503 Conjugative coupling factor TraG/TraD, PFGI-1 CS348_20145 f302e3adf9ef5ffd533b0cd6018bf926 87 Pfam PF01649 Ribosomal protein S20 2 84 4.8E-27 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_20145 f302e3adf9ef5ffd533b0cd6018bf926 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 87 1.4E-33 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_20145 f302e3adf9ef5ffd533b0cd6018bf926 87 Gene3D G3DSA:1.20.58.110 1 87 3.5E-31 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_20145 f302e3adf9ef5ffd533b0cd6018bf926 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 86 4.0E-36 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_20145 f302e3adf9ef5ffd533b0cd6018bf926 87 SUPERFAMILY SSF46992 3 86 4.97E-31 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_20145 f302e3adf9ef5ffd533b0cd6018bf926 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.083 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23610 44a24977a005732da201c37350a127d1 300 Gene3D G3DSA:1.20.5.480 247 294 2.9E-26 T 13-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily CS348_23610 44a24977a005732da201c37350a127d1 300 Gene3D G3DSA:3.30.70.20 18 162 2.7E-104 T 13-10-2018 CS348_23610 44a24977a005732da201c37350a127d1 300 Pfam PF13247 4Fe-4S dicluster domain 92 188 3.3E-25 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_23610 44a24977a005732da201c37350a127d1 300 PIRSF PIRSF036298 1 300 7.3E-166 T 13-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 CS348_23610 44a24977a005732da201c37350a127d1 300 Gene3D G3DSA:3.30.70.20 28 227 2.7E-104 T 13-10-2018 CS348_23610 44a24977a005732da201c37350a127d1 300 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 288 2.8E-21 T 13-10-2018 IPR015246 Formate dehydrogenase, transmembrane CS348_23610 44a24977a005732da201c37350a127d1 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_23610 44a24977a005732da201c37350a127d1 300 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 289 3.9E-146 T 13-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 CS348_23610 44a24977a005732da201c37350a127d1 300 SUPERFAMILY SSF54862 28 290 3.45E-73 T 13-10-2018 CS348_21795 c85aace51675f3b5411e96aad4a31700 65 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 2.7E-21 T 13-10-2018 IPR019201 Protein of unknown function DUF2065 CS348_23415 3174437a1c4d506b2001654a7c439e61 589 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 12 69 4.9E-26 T 13-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 CS348_23415 3174437a1c4d506b2001654a7c439e61 589 Gene3D G3DSA:3.40.50.300 90 303 1.8E-17 T 13-10-2018 CS348_23415 3174437a1c4d506b2001654a7c439e61 589 Pfam PF03237 Terminase-like family 164 386 6.3E-57 T 13-10-2018 IPR004921 Terminase large subunit, T4likevirus-type CS348_23415 3174437a1c4d506b2001654a7c439e61 589 Gene3D G3DSA:3.30.420.240 392 571 2.9E-10 T 13-10-2018 CS348_23415 3174437a1c4d506b2001654a7c439e61 589 Pfam PF17289 Terminase RNaseH-like domain 413 571 3.7E-39 T 13-10-2018 IPR035421 Terminase, large subunit gp17-like CS348_06265 d2bbb40db99f3c5a77863607aa27cdd0 436 Pfam PF00589 Phage integrase family 150 366 1.2E-13 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_06265 d2bbb40db99f3c5a77863607aa27cdd0 436 Gene3D G3DSA:1.10.443.10 142 368 3.7E-18 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_06265 d2bbb40db99f3c5a77863607aa27cdd0 436 SUPERFAMILY SSF56349 148 371 1.59E-15 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 49 65 3.9E-29 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 3.9E-29 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 3.9E-29 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 3.9E-29 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 3 145 42.715 T 13-10-2018 IPR023071 Transcriptional regulator, SlyA CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 Gene3D G3DSA:1.10.10.10 3 146 9.3E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 SUPERFAMILY SSF46785 3 142 1.43E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 Pfam PF01047 MarR family 31 89 1.2E-18 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12845 ec6602cd3e103733b3be475830a01e3b 146 SMART SM00347 24 125 2.4E-32 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 Pfam PF00929 Exonuclease 9 175 1.5E-39 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 Gene3D G3DSA:3.20.20.140 208 243 1.2E-10 T 13-10-2018 CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 Gene3D G3DSA:3.30.420.10 1 191 1.5E-59 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 7.4E-95 T 13-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 SUPERFAMILY SSF53098 7 184 2.45E-52 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 2.2E-97 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_18975 6a01ec68bd4eaf0be9675f10f17a518e 243 SMART SM00479 7 184 7.0E-51 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_12820 3076f2d68f2c4efc385590126d79464f 424 Pfam PF01479 S4 domain 359 403 2.3E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 424 1.4E-150 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.7E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 1.7E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 1.7E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 1.7E-32 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 SMART SM00363 358 419 2.0E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 1.5E-92 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 Gene3D G3DSA:3.40.50.620 1 227 6.2E-94 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_12820 3076f2d68f2c4efc385590126d79464f 424 Gene3D G3DSA:3.10.290.10 331 424 1.4E-29 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 46.629 T 13-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 Gene3D G3DSA:1.10.240.10 228 330 1.5E-37 T 13-10-2018 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 SUPERFAMILY SSF55174 327 423 1.2E-21 T 13-10-2018 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 SUPERFAMILY SSF52374 4 328 1.13E-109 T 13-10-2018 CS348_12820 3076f2d68f2c4efc385590126d79464f 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_17925 ce18eda2f500029034baadd9043cf763 624 SMART SM00387 27 184 2.7E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17925 ce18eda2f500029034baadd9043cf763 624 Pfam PF00183 Hsp90 protein 211 622 2.1E-126 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CS348_17925 ce18eda2f500029034baadd9043cf763 624 SUPERFAMILY SSF55874 4 213 6.55E-67 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_17925 ce18eda2f500029034baadd9043cf763 624 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 25 34 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 120 142 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 26 48 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 190 208 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 172 189 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 75 92 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 5 25 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 PRINTS PR00775 90kDa heat shock protein signature 93 110 3.1E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CS348_17925 ce18eda2f500029034baadd9043cf763 624 Gene3D G3DSA:3.40.50.11260 402 492 6.0E-37 T 13-10-2018 CS348_17925 ce18eda2f500029034baadd9043cf763 624 SUPERFAMILY SSF110942 510 623 5.36E-35 T 13-10-2018 IPR037196 HSP90, C-terminal domain CS348_17925 ce18eda2f500029034baadd9043cf763 624 Gene3D G3DSA:1.20.120.790 493 624 3.1E-48 T 13-10-2018 IPR037196 HSP90, C-terminal domain CS348_17925 ce18eda2f500029034baadd9043cf763 624 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 182 2.2E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17925 ce18eda2f500029034baadd9043cf763 624 PIRSF PIRSF002583 1 624 6.3E-220 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CS348_17925 ce18eda2f500029034baadd9043cf763 624 SUPERFAMILY SSF54211 230 485 1.59E-102 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_17925 ce18eda2f500029034baadd9043cf763 624 Gene3D G3DSA:3.30.565.10 1 215 3.0E-81 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_17925 ce18eda2f500029034baadd9043cf763 624 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 623 33.022 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CS348_17925 ce18eda2f500029034baadd9043cf763 624 Gene3D G3DSA:3.30.230.80 229 401 3.1E-73 T 13-10-2018 CS348_02850 2eb5b3c4b0506783805b840094fcffcb 335 Gene3D G3DSA:3.20.20.30 3 331 9.8E-98 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CS348_02850 2eb5b3c4b0506783805b840094fcffcb 335 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 8 327 1.9E-134 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 CS348_02850 2eb5b3c4b0506783805b840094fcffcb 335 SUPERFAMILY SSF51679 6 327 1.1E-86 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CS348_02850 2eb5b3c4b0506783805b840094fcffcb 335 Pfam PF00296 Luciferase-like monooxygenase 8 303 7.8E-35 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CS348_06025 9e0deb64e7d06ea54fefb1c0b0293763 136 PIRSF PIRSF005087 1 136 4.4E-54 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI CS348_06025 9e0deb64e7d06ea54fefb1c0b0293763 136 TIGRFAM TIGR00333 nrdI: nrdI protein 5 130 2.5E-58 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI CS348_06025 9e0deb64e7d06ea54fefb1c0b0293763 136 Gene3D G3DSA:3.40.50.360 3 133 8.5E-49 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_06025 9e0deb64e7d06ea54fefb1c0b0293763 136 SUPERFAMILY SSF52218 2 131 8.68E-23 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_06025 9e0deb64e7d06ea54fefb1c0b0293763 136 Pfam PF07972 NrdI Flavodoxin like 5 122 2.4E-47 T 13-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI CS348_06025 9e0deb64e7d06ea54fefb1c0b0293763 136 Hamap MF_00128 Protein NrdI [nrdI]. 3 132 36.37 T 13-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 SUPERFAMILY SSF47384 227 289 9.22E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 SMART SM00387 332 440 5.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 3.1E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 438 2.2E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 Pfam PF00672 HAMP domain 182 225 2.9E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 SMART SM00304 180 232 6.2E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 1.1E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 SMART SM00388 233 293 7.0E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 Gene3D G3DSA:1.10.287.130 178 288 5.5E-22 T 13-10-2018 CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 SUPERFAMILY SSF55874 292 441 1.31E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_01670 15a71dea05d17b8587cae00fbc3f8f1e 450 Gene3D G3DSA:3.30.565.10 294 449 2.5E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_19580 1f008ec8e5b57bb94969580c94dbb5e8 316 Pfam PF04616 Glycosyl hydrolases family 43 5 306 2.4E-80 T 13-10-2018 IPR006710 Glycoside hydrolase, family 43 GO:0004553|GO:0005975 CS348_19580 1f008ec8e5b57bb94969580c94dbb5e8 316 Gene3D G3DSA:2.115.10.20 2 315 1.1E-94 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CS348_19580 1f008ec8e5b57bb94969580c94dbb5e8 316 PIRSF PIRSF025414 1 316 1.5E-139 T 13-10-2018 IPR016828 Alpha-L-arabinofuranosidase KEGG: 00520+3.2.1.55 CS348_19580 1f008ec8e5b57bb94969580c94dbb5e8 316 SUPERFAMILY SSF75005 5 311 5.61E-69 T 13-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 SMART SM00079 22 243 0.0069 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 241 4.9E-89 T 13-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 Gene3D G3DSA:3.40.190.10 25 240 1.8E-85 T 13-10-2018 CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 1.2E-69 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 Gene3D G3DSA:3.40.190.10 108 201 1.8E-85 T 13-10-2018 CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 SUPERFAMILY SSF53850 1 242 5.17E-73 T 13-10-2018 CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_15880 e2dff7c430243d0f500e42c2cc1a3bab 243 SMART SM00062 22 242 2.0E-86 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_07670 d9084719ca4d0e129aa4daf902d5cd7c 251 PRINTS PR01805 VacJ lipoprotein signature 30 43 1.3E-34 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CS348_07670 d9084719ca4d0e129aa4daf902d5cd7c 251 PRINTS PR01805 VacJ lipoprotein signature 48 64 1.3E-34 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CS348_07670 d9084719ca4d0e129aa4daf902d5cd7c 251 PRINTS PR01805 VacJ lipoprotein signature 99 116 1.3E-34 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CS348_07670 d9084719ca4d0e129aa4daf902d5cd7c 251 PRINTS PR01805 VacJ lipoprotein signature 138 155 1.3E-34 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CS348_07670 d9084719ca4d0e129aa4daf902d5cd7c 251 Pfam PF04333 MlaA lipoprotein 29 222 7.6E-66 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 96 102 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 Gene3D G3DSA:3.90.220.20 228 365 8.8E-10 T 13-10-2018 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 Pfam PF02384 N-6 DNA Methylase 70 211 7.2E-10 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 SUPERFAMILY SSF53335 5 274 1.39E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 Gene3D G3DSA:3.40.50.150 7 223 3.3E-30 T 13-10-2018 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 SUPERFAMILY SSF116734 245 363 1.16E-8 T 13-10-2018 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 5 21 1.0E-11 T 13-10-2018 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 129 153 1.0E-11 T 13-10-2018 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 93 105 1.0E-11 T 13-10-2018 CS348_06320 0ca7e11a53fa826def7d27eba7353815 373 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 29 43 1.0E-11 T 13-10-2018 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 Gene3D G3DSA:3.10.25.10 210 314 7.0E-39 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 310 4.2E-122 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 13-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 37.436 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 SUPERFAMILY SSF53328 5 207 1.02E-66 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 Gene3D G3DSA:3.40.50.170 2 209 9.6E-87 T 13-10-2018 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 SUPERFAMILY SSF50486 208 309 8.79E-37 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 Pfam PF00551 Formyl transferase 6 183 2.3E-55 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_02175 dfe42a34d80ec110a1d711ecf2680057 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 2.7E-31 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CS348_03420 6e50c924a6d5626fdd0cbf160f55b712 83 SUPERFAMILY SSF58042 22 69 1.83E-11 T 13-10-2018 CS348_03420 6e50c924a6d5626fdd0cbf160f55b712 83 Gene3D G3DSA:1.20.5.190 19 72 7.1E-13 T 13-10-2018 CS348_03420 6e50c924a6d5626fdd0cbf160f55b712 83 Pfam PF04728 Lipoprotein leucine-zipper 23 67 6.5E-9 T 13-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 37 768 5.0E-262 T 13-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 686 767 1.7E-14 T 13-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 Gene3D G3DSA:3.40.710.10 252 587 2.9E-65 T 13-10-2018 CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 Gene3D G3DSA:1.10.3810.10 55 250 3.3E-55 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 SUPERFAMILY SSF56601 208 639 1.03E-93 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 Pfam PF00905 Penicillin binding protein transpeptidase domain 330 519 1.0E-10 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 SUPERFAMILY SSF53955 40 259 1.12E-65 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_06900 27f24f0c4d0936debf8646e1965b4d4d 771 Pfam PF00912 Transglycosylase 63 226 4.6E-51 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 Pfam PF04888 Secretion system effector C (SseC) like family 259 590 1.3E-86 T 13-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 Gene3D G3DSA:1.20.120.330 80 237 6.3E-64 T 13-10-2018 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 Gene3D G3DSA:1.20.120.330 253 314 3.8E-8 T 13-10-2018 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 Pfam PF16535 Type III cell invasion protein SipB 82 234 7.4E-57 T 13-10-2018 IPR032391 Invasin IpaB, N-terminal CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 267 287 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 454 474 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 510 527 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 135 155 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 542 560 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 163 179 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_05595 cae4f58e640957128c287baf4f9fec44 593 PRINTS PR01375 Salmonella/Shigella invasin protein B signature 300 319 4.2E-72 T 13-10-2018 IPR003895 Type III secretion system, invasin protein B GO:0005576|GO:0009405|GO:0016021 CS348_12425 b6779451402fc57912409a69b1033413 221 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 213 3.0E-36 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CS348_12425 b6779451402fc57912409a69b1033413 221 Pfam PF01914 MarC family integral membrane protein 5 217 1.6E-69 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CS348_01295 ed6c76dba940005288fa69eab407dd48 398 Gene3D G3DSA:1.10.8.260 262 322 7.9E-130 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily CS348_01295 ed6c76dba940005288fa69eab407dd48 398 Gene3D G3DSA:3.50.50.60 7 388 7.9E-130 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01295 ed6c76dba940005288fa69eab407dd48 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.0E-7 T 13-10-2018 CS348_01295 ed6c76dba940005288fa69eab407dd48 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 2.0E-7 T 13-10-2018 CS348_01295 ed6c76dba940005288fa69eab407dd48 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 2.0E-7 T 13-10-2018 CS348_01295 ed6c76dba940005288fa69eab407dd48 398 Pfam PF03486 HI0933-like protein 5 392 5.0E-157 T 13-10-2018 CS348_01295 ed6c76dba940005288fa69eab407dd48 398 SUPERFAMILY SSF51905 3 395 2.46E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01295 ed6c76dba940005288fa69eab407dd48 398 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 392 3.7E-127 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CS348_01295 ed6c76dba940005288fa69eab407dd48 398 SUPERFAMILY SSF160996 190 338 3.92E-45 T 13-10-2018 CS348_01295 ed6c76dba940005288fa69eab407dd48 398 Gene3D G3DSA:2.40.30.10 188 339 7.9E-130 T 13-10-2018 CS348_05645 e166eb7af5c0bd66de6feb770620ff43 553 SUPERFAMILY SSF48452 277 462 2.47E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_05645 e166eb7af5c0bd66de6feb770620ff43 553 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 105 4.0E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_05645 e166eb7af5c0bd66de6feb770620ff43 553 SMART SM00862 31 105 3.0E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_05645 e166eb7af5c0bd66de6feb770620ff43 553 SUPERFAMILY SSF46894 10 107 9.35E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_05645 e166eb7af5c0bd66de6feb770620ff43 553 Gene3D G3DSA:1.25.40.10 247 467 2.2E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_05645 e166eb7af5c0bd66de6feb770620ff43 553 Gene3D G3DSA:1.10.10.10 16 111 3.6E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03625 eeda5b261c8cd2ea767115901756afea 434 SUPERFAMILY SSF103473 3 421 8.76E-80 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_03625 eeda5b261c8cd2ea767115901756afea 434 Gene3D G3DSA:1.20.1250.20 1 201 2.6E-44 T 13-10-2018 CS348_03625 eeda5b261c8cd2ea767115901756afea 434 Gene3D G3DSA:1.20.1250.20 218 426 4.6E-30 T 13-10-2018 CS348_03625 eeda5b261c8cd2ea767115901756afea 434 Pfam PF07690 Major Facilitator Superfamily 302 427 1.2E-9 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_03625 eeda5b261c8cd2ea767115901756afea 434 Pfam PF07690 Major Facilitator Superfamily 15 291 6.0E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_03625 eeda5b261c8cd2ea767115901756afea 434 PIRSF PIRSF002808 1 428 9.9E-35 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 SUPERFAMILY SSF63411 33 262 8.3E-49 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Pfam PF00675 Insulinase (Peptidase family M16) 54 191 2.0E-38 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 75 98 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 SUPERFAMILY SSF63411 735 957 2.44E-46 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Gene3D G3DSA:3.30.830.10 652 917 5.8E-141 T 13-10-2018 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Gene3D G3DSA:3.30.830.10 272 502 6.0E-71 T 13-10-2018 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Gene3D G3DSA:3.30.830.10 504 885 5.8E-141 T 13-10-2018 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Gene3D G3DSA:3.30.830.10 24 271 6.0E-79 T 13-10-2018 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Pfam PF16187 Middle or third domain of peptidase_M16 400 675 2.5E-53 T 13-10-2018 IPR032632 Peptidase M16, middle/third domain CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 SUPERFAMILY SSF63411 504 729 8.21E-45 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Pfam PF05193 Peptidase M16 inactive domain 217 392 5.3E-18 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 Pfam PF05193 Peptidase M16 inactive domain 681 856 1.4E-13 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CS348_05025 8f32f37efe89a429e71df4c1f3a1b19e 962 SUPERFAMILY SSF63411 265 502 8.56E-67 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_12180 d4c217ebacee2ba9078f9aa12d75ab90 71 Pfam PF10684 Putative biofilm-dependent modulation protein 1 71 1.3E-51 T 13-10-2018 IPR019625 Biofilm-dependent modulation protein Bdm, putative CS348_08180 bec4e0682a82a632117bb525c302b026 398 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 3 167 4.6E-37 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_08180 bec4e0682a82a632117bb525c302b026 398 Gene3D G3DSA:3.40.980.10 2 172 1.4E-46 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_08180 bec4e0682a82a632117bb525c302b026 398 PIRSF PIRSF006728 1 384 2.7E-111 T 13-10-2018 IPR008135 Competence-induced protein CinA CS348_08180 bec4e0682a82a632117bb525c302b026 398 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 397 3.1E-173 T 13-10-2018 IPR008135 Competence-induced protein CinA CS348_08180 bec4e0682a82a632117bb525c302b026 398 SMART SM00852 5 172 1.2E-34 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_08180 bec4e0682a82a632117bb525c302b026 398 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 398 120.725 T 13-10-2018 IPR008135 Competence-induced protein CinA CS348_08180 bec4e0682a82a632117bb525c302b026 398 SUPERFAMILY SSF142433 249 378 6.54E-6 T 13-10-2018 IPR036653 CinA-like, C-terminal CS348_08180 bec4e0682a82a632117bb525c302b026 398 Pfam PF00994 Probable molybdopterin binding domain 6 170 4.4E-31 T 13-10-2018 IPR001453 MoaB/Mog domain CS348_08180 bec4e0682a82a632117bb525c302b026 398 SUPERFAMILY SSF53218 2 202 6.67E-36 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CS348_17050 fd45ed464bb555f777782a94180874fb 213 Gene3D G3DSA:3.30.930.10 2 204 9.3E-62 T 13-10-2018 CS348_17050 fd45ed464bb555f777782a94180874fb 213 Pfam PF03099 Biotin/lipoate A/B protein ligase family 62 159 3.0E-7 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CS348_17050 fd45ed464bb555f777782a94180874fb 213 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 75 128 3.0E-24 T 13-10-2018 CS348_17050 fd45ed464bb555f777782a94180874fb 213 PIRSF PIRSF016262 2 210 9.4E-58 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_17050 fd45ed464bb555f777782a94180874fb 213 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 71 86 - T 13-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CS348_17050 fd45ed464bb555f777782a94180874fb 213 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 28 204 7.1E-82 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_17050 fd45ed464bb555f777782a94180874fb 213 SUPERFAMILY SSF55681 4 204 2.73E-68 T 13-10-2018 CS348_17050 fd45ed464bb555f777782a94180874fb 213 Hamap MF_00013 Octanoyltransferase [lipB]. 5 206 37.223 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 SUPERFAMILY SSF53335 6 363 2.18E-54 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 Gene3D G3DSA:3.40.50.150 13 362 1.3E-151 T 13-10-2018 CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.499 T 13-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 Gene3D G3DSA:3.40.1350.30 45 189 1.3E-151 T 13-10-2018 CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 10 365 1.3E-188 T 13-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 365 3.8E-193 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CS348_22965 962dfed6aa6b937e3c94d092675d2c90 366 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 13-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 Gene3D G3DSA:1.20.140.10 288 478 1.4E-65 T 13-10-2018 CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 281 2.3E-94 T 13-10-2018 IPR024674 HpaB/PvcC/4-BUDH N-terminal CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 PIRSF PIRSF000331 11 501 2.1E-205 T 13-10-2018 IPR004925 HpaB/PvcC/4-BUDH CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 Gene3D G3DSA:2.40.110.10 152 282 6.3E-39 T 13-10-2018 CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 489 6.1E-65 T 13-10-2018 IPR024719 HpaB/PvcC/4-BUDH C-terminal CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 13-10-2018 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 Gene3D G3DSA:1.10.3140.10 14 151 1.9E-46 T 13-10-2018 CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 PIRSF PIRSF500125 1 518 2.1E-289 T 13-10-2018 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 SUPERFAMILY SSF47203 272 494 1.63E-44 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CS348_14995 8c93b3cc3fe348c7fe53af79483a53bd 520 SUPERFAMILY SSF56645 13 282 7.33E-83 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CS348_17635 7a39ee552bfd2167e3186403c6a8acc5 132 Gene3D G3DSA:3.90.580.10 1 75 6.5E-24 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 CS348_17635 7a39ee552bfd2167e3186403c6a8acc5 132 Pfam PF01807 CHC2 zinc finger 2 60 5.0E-24 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CS348_17635 7a39ee552bfd2167e3186403c6a8acc5 132 SMART SM00400 21 74 1.3E-15 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CS348_17635 7a39ee552bfd2167e3186403c6a8acc5 132 SUPERFAMILY SSF57783 2 60 3.34E-20 T 13-10-2018 CS348_22975 49432354281de70aa8ba81864c4766d1 211 SUPERFAMILY SSF46689 2 78 5.67E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22975 49432354281de70aa8ba81864c4766d1 211 Gene3D G3DSA:1.10.10.60 2 53 4.3E-23 T 13-10-2018 CS348_22975 49432354281de70aa8ba81864c4766d1 211 Gene3D G3DSA:1.10.357.10 54 210 2.0E-42 T 13-10-2018 CS348_22975 49432354281de70aa8ba81864c4766d1 211 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 2 210 53.041 T 13-10-2018 IPR023764 Transcriptional repressor HTH, FabR CS348_22975 49432354281de70aa8ba81864c4766d1 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 59 3.1E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_19145 f48a3ae3c5c8b905104fa6adb91af521 198 Pfam PF01351 Ribonuclease HII 13 189 1.4E-38 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain CS348_19145 f48a3ae3c5c8b905104fa6adb91af521 198 SUPERFAMILY SSF53098 3 195 1.17E-69 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_19145 f48a3ae3c5c8b905104fa6adb91af521 198 Hamap MF_00052_B Ribonuclease HII [rnhB]. 11 190 39.715 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 CS348_19145 f48a3ae3c5c8b905104fa6adb91af521 198 Gene3D G3DSA:3.30.420.10 2 197 5.0E-74 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_13290 dfcb6a8634cdcb0c3e9748000bcfa1ff 252 ProSitePatterns PS01028 Dehydroquinase class I active site. 114 144 - T 13-10-2018 IPR018508 3-dehydroquinate dehydratase, active site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CS348_13290 dfcb6a8634cdcb0c3e9748000bcfa1ff 252 SUPERFAMILY SSF51569 1 251 2.44E-83 T 13-10-2018 CS348_13290 dfcb6a8634cdcb0c3e9748000bcfa1ff 252 TIGRFAM TIGR01093 aroD: 3-dehydroquinate dehydratase, type I 17 245 1.6E-82 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CS348_13290 dfcb6a8634cdcb0c3e9748000bcfa1ff 252 Hamap MF_00214 3-dehydroquinate dehydratase [aroD]. 17 249 42.606 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CS348_13290 dfcb6a8634cdcb0c3e9748000bcfa1ff 252 Gene3D G3DSA:3.20.20.70 1 252 5.2E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_13290 dfcb6a8634cdcb0c3e9748000bcfa1ff 252 Pfam PF01487 Type I 3-dehydroquinase 20 246 3.2E-70 T 13-10-2018 IPR001381 3-dehydroquinate dehydratase type I GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 7.0E-13 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 7.0E-13 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 7.0E-13 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 7.0E-13 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 7.0E-13 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 SUPERFAMILY SSF52374 6 286 2.82E-87 T 13-10-2018 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 Gene3D G3DSA:3.40.50.620 6 284 1.2E-112 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 271 2.9E-111 T 13-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 Gene3D G3DSA:3.40.50.620 81 218 1.2E-112 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 258 4.8E-47 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CS348_19360 e1e79119041374b3eb1f20c1b59f467a 298 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 290 40.793 T 13-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 CS348_17810 405a5e1436886980b729424057685324 377 SUPERFAMILY SSF56935 44 377 6.41E-29 T 13-10-2018 CS348_17810 405a5e1436886980b729424057685324 377 Gene3D G3DSA:2.40.160.10 42 377 4.0E-29 T 13-10-2018 IPR023614 Porin domain superfamily CS348_04395 6765abb91565edb3e606bed1c0655fcd 91 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 2 76 2.0E-39 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CS348_04395 6765abb91565edb3e606bed1c0655fcd 91 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.701 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CS348_04395 6765abb91565edb3e606bed1c0655fcd 91 Pfam PF04362 Bacterial Fe(2+) trafficking 1 87 3.9E-40 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CS348_04395 6765abb91565edb3e606bed1c0655fcd 91 Gene3D G3DSA:1.10.3880.10 1 91 2.9E-38 T 13-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 CS348_04395 6765abb91565edb3e606bed1c0655fcd 91 PIRSF PIRSF029827 1 90 4.3E-44 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CS348_04395 6765abb91565edb3e606bed1c0655fcd 91 SUPERFAMILY SSF111148 1 90 9.16E-40 T 13-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 CS348_11685 7b2df234e2280b0e56a0e39abad5c023 311 PIRSF PIRSF004976 1 272 1.9E-77 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 CS348_11685 7b2df234e2280b0e56a0e39abad5c023 311 SUPERFAMILY SSF52402 17 235 5.39E-54 T 13-10-2018 CS348_11685 7b2df234e2280b0e56a0e39abad5c023 311 Pfam PF01171 PP-loop family 42 204 4.1E-13 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CS348_11685 7b2df234e2280b0e56a0e39abad5c023 311 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 10 271 57.982 T 13-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 CS348_11685 7b2df234e2280b0e56a0e39abad5c023 311 Gene3D G3DSA:3.40.50.620 2 261 5.8E-48 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 341 7.4E-39 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 SUPERFAMILY SSF55326 7 170 1.47E-52 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 SUPERFAMILY SSF56042 171 342 1.02E-64 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 Gene3D G3DSA:3.30.1330.10 6 170 1.0E-67 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 47.082 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 335 2.5E-153 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 Gene3D G3DSA:3.90.650.10 171 345 1.2E-74 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_07075 2e1cca2656e6ea0796fc56d8812df0d4 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 58 164 3.6E-15 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CS348_09105 b0804d9f54d73f6d13f49ba3fc57a886 248 TIGRFAM TIGR04009 wcaE: colanic acid biosynthesis glycosyltransferase WcaE 1 248 9.6E-159 T 13-10-2018 IPR024010 Colanic acid biosynthesis, glycosyl transferase, WcaE CS348_09105 b0804d9f54d73f6d13f49ba3fc57a886 248 Pfam PF00535 Glycosyl transferase family 2 4 142 3.7E-16 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_09105 b0804d9f54d73f6d13f49ba3fc57a886 248 Gene3D G3DSA:3.90.550.10 2 223 6.8E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09105 b0804d9f54d73f6d13f49ba3fc57a886 248 SUPERFAMILY SSF53448 1 222 1.03E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_06850 05c7d69be145ef06d1df24e552413e19 171 SMART SM00271 1 66 2.5E-8 T 13-10-2018 IPR001623 DnaJ domain CS348_06850 05c7d69be145ef06d1df24e552413e19 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 168 4.2E-63 T 13-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_06850 05c7d69be145ef06d1df24e552413e19 171 Gene3D G3DSA:1.20.1280.20 80 170 6.0E-25 T 13-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_06850 05c7d69be145ef06d1df24e552413e19 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 169 24.615 T 13-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_06850 05c7d69be145ef06d1df24e552413e19 171 SUPERFAMILY SSF46565 1 75 7.33E-18 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_06850 05c7d69be145ef06d1df24e552413e19 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 160 2.3E-17 T 13-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_06850 05c7d69be145ef06d1df24e552413e19 171 SUPERFAMILY SSF47144 77 170 1.57E-24 T 13-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_06850 05c7d69be145ef06d1df24e552413e19 171 Gene3D G3DSA:1.10.287.110 1 79 2.4E-25 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 SUPERFAMILY SSF47757 14 91 2.22E-25 T 13-10-2018 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PRINTS PR00996 Glutamate methyltransferase family signature 118 138 1.2E-46 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PRINTS PR00996 Glutamate methyltransferase family signature 46 59 1.2E-46 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PRINTS PR00996 Glutamate methyltransferase family signature 243 266 1.2E-46 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PRINTS PR00996 Glutamate methyltransferase family signature 152 168 1.2E-46 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PRINTS PR00996 Glutamate methyltransferase family signature 85 97 1.2E-46 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PRINTS PR00996 Glutamate methyltransferase family signature 224 238 1.2E-46 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 Pfam PF03705 CheR methyltransferase, all-alpha domain 26 76 1.2E-18 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 PIRSF PIRSF000410 9 285 4.0E-101 T 13-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 Pfam PF01739 CheR methyltransferase, SAM binding domain 92 280 4.3E-59 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 SUPERFAMILY SSF53335 92 281 3.14E-59 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 Gene3D G3DSA:3.40.50.150 91 284 2.5E-75 T 13-10-2018 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 SMART SM00138 24 284 7.7E-126 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 CS348_10145 4a520ee9bcba56ea118b2559db74ac43 288 Gene3D G3DSA:1.10.155.10 11 90 2.7E-35 T 13-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily CS348_21780 877dff4680d2965f11bb3b85c370f505 141 Pfam PF02082 Transcriptional regulator 2 82 6.6E-24 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CS348_21780 877dff4680d2965f11bb3b85c370f505 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 45.567 T 13-10-2018 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 CS348_21780 877dff4680d2965f11bb3b85c370f505 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 128 4.8E-36 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CS348_21780 877dff4680d2965f11bb3b85c370f505 141 Gene3D G3DSA:1.10.10.10 1 137 4.0E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21780 877dff4680d2965f11bb3b85c370f505 141 SUPERFAMILY SSF46785 2 131 7.49E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_11875 bc08c52991a7306918bc5f526b1f3a9b 400 Pfam PF01070 FMN-dependent dehydrogenase 49 391 4.0E-112 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 CS348_11875 bc08c52991a7306918bc5f526b1f3a9b 400 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 290 296 - T 13-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 CS348_11875 bc08c52991a7306918bc5f526b1f3a9b 400 Gene3D G3DSA:3.20.20.70 35 400 2.8E-120 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11875 bc08c52991a7306918bc5f526b1f3a9b 400 SUPERFAMILY SSF51395 38 390 4.66E-92 T 13-10-2018 CS348_11875 bc08c52991a7306918bc5f526b1f3a9b 400 PIRSF PIRSF000138 18 397 6.8E-126 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Gene3D G3DSA:3.90.980.10 115 240 2.0E-49 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Gene3D G3DSA:3.90.580.10 1 101 3.3E-38 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 SMART SM00766 450 575 2.3E-47 T 13-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 SUPERFAMILY SSF57783 4 100 3.91E-36 T 13-10-2018 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Pfam PF13155 Toprim-like 263 348 3.9E-14 T 13-10-2018 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Hamap MF_00974 DNA primase [dnaG]. 4 576 29.958 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Gene3D G3DSA:3.40.1360.10 241 367 1.8E-44 T 13-10-2018 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 TIGRFAM TIGR01391 dnaG: DNA primase 4 415 4.4E-151 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 SMART SM00400 36 90 1.2E-38 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 SUPERFAMILY SSF117023 447 578 8.11E-42 T 13-10-2018 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 2.1E-44 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Gene3D G3DSA:1.20.50.20 368 426 2.4E-22 T 13-10-2018 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Pfam PF10410 DnaB-helicase binding domain of primase 370 423 1.1E-7 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Gene3D G3DSA:1.10.860.10 434 581 1.0E-58 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 SUPERFAMILY SSF56731 116 427 2.88E-113 T 13-10-2018 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Pfam PF01807 CHC2 zinc finger 7 100 3.1E-41 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 SMART SM00493 259 330 1.7E-17 T 13-10-2018 IPR006171 TOPRIM domain CS348_03180 18114362dd56899838e1ca8a6609a1c4 581 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 4.1E-31 T 13-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 CS348_00845 2f45654d16c140e0402c38abe93d226e 328 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 30 286 2.1E-110 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 CS348_00845 2f45654d16c140e0402c38abe93d226e 328 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 30 312 7.1E-107 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 CS348_00845 2f45654d16c140e0402c38abe93d226e 328 PIRSF PIRSF006470 1 328 2.6E-102 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 CS348_00845 2f45654d16c140e0402c38abe93d226e 328 Gene3D G3DSA:3.40.190.170 24 328 5.7E-105 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CS348_22270 8f9e98d28fe33038e68543150aff72fd 169 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 39 162 4.2E-62 T 13-10-2018 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF CS348_22270 8f9e98d28fe33038e68543150aff72fd 169 Pfam PF03918 Cytochrome C biogenesis protein 43 166 2.7E-44 T 13-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family CS348_22270 8f9e98d28fe33038e68543150aff72fd 169 Gene3D G3DSA:1.10.8.640 54 139 1.9E-33 T 13-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily CS348_05755 b1dc0b84104338fd680a2911dda51160 290 SUPERFAMILY SSF52540 88 286 4.56E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05755 b1dc0b84104338fd680a2911dda51160 290 PIRSF PIRSF005624 70 290 6.0E-94 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 CS348_05755 b1dc0b84104338fd680a2911dda51160 290 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 76 289 8.2E-99 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 CS348_05755 b1dc0b84104338fd680a2911dda51160 290 Gene3D G3DSA:3.40.50.300 86 290 4.7E-63 T 13-10-2018 CS348_05755 b1dc0b84104338fd680a2911dda51160 290 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 106 267 6.3E-35 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 SUPERFAMILY SSF48179 168 289 2.14E-37 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 SUPERFAMILY SSF51735 1 167 5.59E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 5.3E-37 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 143 1.4E-23 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 Gene3D G3DSA:1.10.1040.10 168 290 6.5E-50 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 291 9.8E-74 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 CS348_18195 faede1d504aaa85870e3a92cbd93e6a0 303 Gene3D G3DSA:3.40.50.720 1 167 8.2E-60 T 13-10-2018 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 Pfam PF01555 DNA methylase 129 448 5.6E-58 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 SUPERFAMILY SSF53335 102 466 1.1E-62 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 132 138 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 391 413 3.6E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 414 428 3.6E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 129 141 3.6E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 191 210 3.6E-19 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CS348_18590 43b8d06086730492c9a48581cb1b1ac3 652 PIRSF PIRSF015855 1 651 1.4E-192 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CS348_19350 cf09000e7e35629434d7898a01eb9e42 234 Gene3D G3DSA:2.40.50.580 1 80 5.6E-30 T 13-10-2018 CS348_19350 cf09000e7e35629434d7898a01eb9e42 234 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 57.467 T 13-10-2018 IPR005224 Sugar fermentation stimulation protein CS348_19350 cf09000e7e35629434d7898a01eb9e42 234 Gene3D G3DSA:3.40.1350.60 81 234 1.5E-59 T 13-10-2018 CS348_19350 cf09000e7e35629434d7898a01eb9e42 234 Pfam PF03749 Sugar fermentation stimulation protein 13 225 1.7E-75 T 13-10-2018 IPR005224 Sugar fermentation stimulation protein CS348_19350 cf09000e7e35629434d7898a01eb9e42 234 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 4 233 4.4E-94 T 13-10-2018 IPR005224 Sugar fermentation stimulation protein CS348_14775 fad83aa5272b90f51d18d015fc1494f1 184 PIRSF PIRSF004690 1 184 4.9E-56 T 13-10-2018 IPR026269 Tat proofreading chaperone DmsD-type CS348_14775 fad83aa5272b90f51d18d015fc1494f1 184 Pfam PF02613 Nitrate reductase delta subunit 44 147 4.8E-12 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_14775 fad83aa5272b90f51d18d015fc1494f1 184 SUPERFAMILY SSF89155 2 180 2.49E-40 T 13-10-2018 IPR036411 TorD-like superfamily CS348_14775 fad83aa5272b90f51d18d015fc1494f1 184 Gene3D G3DSA:1.10.3480.10 1 183 4.0E-30 T 13-10-2018 CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 15 316 1.1E-53 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 PIRSF PIRSF006278 2 328 8.5E-94 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 12 328 4.5E-138 T 13-10-2018 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 Gene3D G3DSA:3.40.50.1100 17 322 2.2E-130 T 13-10-2018 CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 Gene3D G3DSA:3.40.50.1100 50 158 2.2E-130 T 13-10-2018 CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 SUPERFAMILY SSF53686 7 326 6.02E-85 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_09970 208bb02cc51e5e92a3a8cdf963e0bdd4 328 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 1 328 74.36 T 13-10-2018 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 Gene3D G3DSA:3.40.1160.10 1 303 2.1E-114 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 Pfam PF00696 Amino acid kinase family 6 276 3.1E-28 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PIRSF PIRSF000723 3 303 2.5E-114 T 13-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 106 125 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 207 222 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 75 93 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 154 173 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 258 273 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 45 64 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 PRINTS PR01469 Bacterial carbamate kinase signature 177 195 4.3E-63 T 13-10-2018 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 TIGRFAM TIGR00746 arcC: carbamate kinase 6 301 1.1E-116 T 13-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 CS348_21275 736b124c48f4d58a1c32d60003dc2f95 310 SUPERFAMILY SSF53633 5 301 5.37E-78 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 SMART SM01018 657 740 8.7E-45 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Gene3D G3DSA:1.10.288.10 936 1092 4.4E-152 T 13-10-2018 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 SUPERFAMILY SSF82282 7 399 9.16E-120 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 SUPERFAMILY SSF56507 902 1226 8.5E-135 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 SUPERFAMILY SSF51717 356 630 7.2E-89 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Pfam PF02574 Homocysteine S-methyltransferase 17 325 6.2E-81 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 PIRSF PIRSF000381 1 1195 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Gene3D G3DSA:3.40.50.280 744 895 3.9E-57 T 13-10-2018 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Gene3D G3DSA:3.20.20.20 340 642 1.6E-129 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Pfam PF00809 Pterin binding enzyme 360 598 2.5E-62 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Gene3D G3DSA:3.10.196.10 908 1223 4.4E-152 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 SUPERFAMILY SSF52242 742 894 1.44E-48 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 SUPERFAMILY SSF47644 653 739 7.59E-29 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Pfam PF02310 B12 binding domain 748 840 1.9E-18 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 TIGRFAM TIGR02082 metH: methionine synthase 12 1192 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Gene3D G3DSA:1.10.1240.10 649 737 4.5E-42 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 938 1208 2.5E-126 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Pfam PF02607 B12 binding domain 660 733 3.5E-25 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_22665 cf4a035053547071ebd364d3e67e5f6c 1227 Gene3D G3DSA:3.20.20.330 1 339 8.0E-128 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 Pfam PF13531 Bacterial extracellular solute-binding protein 32 280 4.7E-46 T 13-10-2018 CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 13-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 48 60 - T 13-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 Gene3D G3DSA:3.40.190.10 114 325 2.4E-140 T 13-10-2018 CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 12 326 7.9E-192 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 Gene3D G3DSA:3.40.190.10 27 295 2.4E-140 T 13-10-2018 CS348_23270 5e8ee06b512af222b85a04bcb5713007 329 SUPERFAMILY SSF53850 21 326 2.82E-94 T 13-10-2018 CS348_20880 b79194d1d27918421293c3f6ee74e472 354 SMART SM00267 178 348 1.2E-56 T 13-10-2018 IPR000160 GGDEF domain CS348_20880 b79194d1d27918421293c3f6ee74e472 354 Pfam PF00990 Diguanylate cyclase, GGDEF domain 190 344 3.6E-46 T 13-10-2018 IPR000160 GGDEF domain CS348_20880 b79194d1d27918421293c3f6ee74e472 354 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 187 348 3.6E-47 T 13-10-2018 IPR000160 GGDEF domain CS348_20880 b79194d1d27918421293c3f6ee74e472 354 SUPERFAMILY SSF55073 194 348 5.34E-44 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_20880 b79194d1d27918421293c3f6ee74e472 354 Gene3D G3DSA:3.30.70.270 176 347 1.3E-51 T 13-10-2018 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 12 298 2.6E-109 T 13-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 SUPERFAMILY SSF47823 10 100 4.51E-10 T 13-10-2018 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 Pfam PF00589 Phage integrase family 115 282 7.5E-53 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 11 93 3.1E-23 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 SUPERFAMILY SSF56349 109 294 2.41E-54 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 8 296 58.286 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 Gene3D G3DSA:1.10.443.10 114 290 1.1E-57 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_24065 68e8db52edc7611f9a938c33db8eb677 300 Gene3D G3DSA:1.10.150.130 2 112 5.6E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_21845 c2a06fa99d79f49f495dd310cb843ec2 384 Pfam PF13484 4Fe-4S double cluster binding domain 198 261 6.9E-19 T 13-10-2018 CS348_21845 c2a06fa99d79f49f495dd310cb843ec2 384 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_21845 c2a06fa99d79f49f495dd310cb843ec2 384 Pfam PF08331 Domain of unknown function (DUF1730) 67 145 4.3E-23 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 CS348_21845 c2a06fa99d79f49f495dd310cb843ec2 384 SUPERFAMILY SSF54862 176 322 1.0E-17 T 13-10-2018 CS348_21845 c2a06fa99d79f49f495dd310cb843ec2 384 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 12 320 51.041 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CS348_21845 c2a06fa99d79f49f495dd310cb843ec2 384 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 19 353 2.6E-153 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CS348_15275 f9a3cdd8d8d722cbcf7dfb28b1fd4949 258 Pfam PF02698 DUF218 domain 81 214 1.7E-28 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CS348_21575 ea473e4bb210cc9bc35107810ddb9749 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 3.0E-30 T 13-10-2018 IPR009491 Protein of unknown function DUF1107 CS348_21575 ea473e4bb210cc9bc35107810ddb9749 68 Gene3D G3DSA:3.30.1910.10 1 64 7.2E-29 T 13-10-2018 CS348_21575 ea473e4bb210cc9bc35107810ddb9749 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 1.9E-30 T 13-10-2018 IPR009491 Protein of unknown function DUF1107 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 Pfam PF00005 ABC transporter 369 513 6.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 Gene3D G3DSA:3.40.50.300 338 587 7.6E-70 T 13-10-2018 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 SUPERFAMILY SSF52540 361 582 1.61E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 Gene3D G3DSA:1.20.1560.10 2 333 2.9E-49 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 Pfam PF00664 ABC transporter transmembrane region 26 291 1.3E-49 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 SUPERFAMILY SSF90123 11 331 1.57E-54 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 SMART SM00382 375 560 3.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15435 430dae145c9ff39001f4b31f2c8956f6 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 2.0E-188 T 13-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 CS348_16700 00e2f8af4cacbcc49738d6181b6b3211 247 Gene3D G3DSA:3.40.1390.30 14 232 4.5E-89 T 13-10-2018 CS348_16700 00e2f8af4cacbcc49738d6181b6b3211 247 SUPERFAMILY SSF102705 1 246 3.53E-84 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CS348_16700 00e2f8af4cacbcc49738d6181b6b3211 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 2.6E-82 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CS348_16700 00e2f8af4cacbcc49738d6181b6b3211 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 234 2.1E-57 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CS348_16700 00e2f8af4cacbcc49738d6181b6b3211 247 Gene3D G3DSA:3.40.1390.30 97 218 4.5E-89 T 13-10-2018 CS348_01185 cf7e74187c0bf434311ccbba55690337 686 Pfam PF05170 AsmA family 1 582 4.4E-176 T 13-10-2018 IPR007844 AsmA CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 PIRSF PIRSF000379 12 764 0.0 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 Pfam PF01228 Glycine radical 634 745 8.2E-42 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 ProSitePatterns PS00850 Glycine radical domain signature. 734 742 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 SUPERFAMILY SSF51998 8 763 1.28E-281 T 13-10-2018 CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 Gene3D G3DSA:3.20.70.20 8 764 0.0 T 13-10-2018 CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 Pfam PF02901 Pyruvate formate lyase-like 26 618 6.8E-195 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CS348_03015 edcc26897b9381cd5d98d1c63b36d9ea 764 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 15 764 0.0 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CS348_20640 baae3fde5059d4a06905bae16f35cb92 507 PIRSF PIRSF007056 1 507 5.2E-236 T 13-10-2018 IPR012036 Bacteriophage Mu, Gp28 CS348_20640 baae3fde5059d4a06905bae16f35cb92 507 Gene3D G3DSA:3.40.50.300 8 198 7.4E-30 T 13-10-2018 CS348_20640 baae3fde5059d4a06905bae16f35cb92 507 Gene3D G3DSA:3.30.420.240 304 482 1.1E-5 T 13-10-2018 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 SUPERFAMILY SSF46785 1 83 2.18E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 Gene3D G3DSA:3.40.190.10 91 287 5.0E-62 T 13-10-2018 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.4E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 SUPERFAMILY SSF53850 88 287 4.46E-36 T 13-10-2018 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 Pfam PF03466 LysR substrate binding domain 87 287 2.1E-43 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 Gene3D G3DSA:3.40.190.10 164 269 5.0E-62 T 13-10-2018 CS348_03710 2ca5be39aecdb44c39f93c32b1299b14 292 Gene3D G3DSA:1.10.10.10 1 90 2.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 Pfam PF03129 Anticodon binding domain 336 420 1.1E-10 T 13-10-2018 IPR004154 Anticodon-binding CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 Gene3D G3DSA:3.40.50.800 326 423 4.1E-27 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 SUPERFAMILY SSF55681 5 318 1.85E-105 T 13-10-2018 CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 Gene3D G3DSA:3.30.930.10 2 322 1.5E-117 T 13-10-2018 CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 PIRSF PIRSF001549 2 423 3.3E-128 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 SUPERFAMILY SSF52954 329 423 1.6E-25 T 13-10-2018 CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.788 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 2.0E-47 T 13-10-2018 CS348_06950 db2d8df46d93c31ba4412d72c9ce0846 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 4.8E-156 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 SUPERFAMILY SSF53790 12 232 1.05E-83 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 213 2.8E-29 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.497 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 282 2.4E-115 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 Gene3D G3DSA:3.30.950.10 121 241 1.7E-45 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 Gene3D G3DSA:3.40.1010.10 1 120 3.8E-48 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 PIRSF PIRSF005917 1 287 6.2E-107 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CS348_02915 66fb55fb47fb8600f504f08e522d5278 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 512 49.843 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 SUPERFAMILY SSF64158 79 310 6.28E-85 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 SUPERFAMILY SSF53649 5 510 7.2E-73 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 Pfam PF01676 Metalloenzyme superfamily 6 500 1.4E-83 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 86 299 1.1E-82 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 PIRSF PIRSF001492 1 514 1.6E-206 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 Gene3D G3DSA:3.40.1450.10 79 312 6.6E-217 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 Gene3D G3DSA:3.40.720.10 7 510 6.6E-217 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_00695 cc21985d186a775370a6ebf6b0282ea1 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 511 1.0E-244 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_22015 b0d9d426450be5b983850a184b0481a9 19 Pfam PF13693 Winged helix-turn-helix DNA-binding 1 18 1.6E-7 T 13-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain CS348_22015 b0d9d426450be5b983850a184b0481a9 19 Gene3D G3DSA:1.10.260.40 1 19 1.7E-8 T 13-10-2018 CS348_22015 b0d9d426450be5b983850a184b0481a9 19 SUPERFAMILY SSF47413 1 18 9.0E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_07100 7a77ea7a6d6ef530ce4d3a1d79fd19f2 487 Pfam PF01435 Peptidase family M48 75 259 2.3E-25 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CS348_07100 7a77ea7a6d6ef530ce4d3a1d79fd19f2 487 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 4 484 41.979 T 13-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 CS348_07100 7a77ea7a6d6ef530ce4d3a1d79fd19f2 487 Gene3D G3DSA:1.25.40.10 248 484 1.5E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_07100 7a77ea7a6d6ef530ce4d3a1d79fd19f2 487 Gene3D G3DSA:3.30.2010.10 75 150 4.3E-5 T 13-10-2018 CS348_07100 7a77ea7a6d6ef530ce4d3a1d79fd19f2 487 SUPERFAMILY SSF48452 308 427 5.26E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_07100 7a77ea7a6d6ef530ce4d3a1d79fd19f2 487 Pfam PF14559 Tetratricopeptide repeat 354 418 3.9E-9 T 13-10-2018 CS348_20500 fd168c3d0132f3628b3b578d58c69f07 229 Pfam PF06551 Protein of unknown function (DUF1120) 27 131 1.5E-37 T 13-10-2018 IPR010546 Protein of unknown function DUF1120 CS348_24530 3fa70bc362ecfb7916f2729c24281473 457 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 6 89 7.7E-36 T 13-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 CS348_24530 3fa70bc362ecfb7916f2729c24281473 457 Pfam PF02378 Phosphotransferase system, EIIC 130 393 6.4E-13 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_24530 3fa70bc362ecfb7916f2729c24281473 457 Gene3D G3DSA:3.40.50.2300 1 105 8.6E-38 T 13-10-2018 CS348_24530 3fa70bc362ecfb7916f2729c24281473 457 SUPERFAMILY SSF52794 4 105 5.41E-35 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_24530 3fa70bc362ecfb7916f2729c24281473 457 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 7 89 3.6E-17 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_24530 3fa70bc362ecfb7916f2729c24281473 457 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 117 449 1.6E-134 T 13-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 CS348_15910 fb84e00c330bf3daa5bbef2164521424 157 Pfam PF10767 Protein of unknown function (DUF2593) 16 155 5.0E-62 T 13-10-2018 IPR019703 Protein of unknown function DUF2593 CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 2.8E-21 T 13-10-2018 CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 6.0E-25 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 SUPERFAMILY SSF46785 12 70 4.01E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 SMART SM00344 12 121 2.1E-55 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 SUPERFAMILY SSF54909 74 157 2.68E-22 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 Gene3D G3DSA:1.10.10.10 1 65 7.6E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_15420 31552388ae2bc68bbd1b4365e3e3d017 164 Gene3D G3DSA:3.30.70.920 66 149 1.7E-25 T 13-10-2018 CS348_23420 9a1fedd041917e48fcff675947da4e78 348 Pfam PF04860 Phage portal protein 94 328 3.2E-11 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein CS348_23420 9a1fedd041917e48fcff675947da4e78 348 PIRSF PIRSF018494 1 348 9.7E-154 T 13-10-2018 IPR030935 Phage portal protein PBSX family, Proteobacteria CS348_23420 9a1fedd041917e48fcff675947da4e78 348 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 57 335 3.2E-75 T 13-10-2018 IPR006430 Phage portal protein PBSX family CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 9 453 2.1E-135 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 Gene3D G3DSA:3.40.50.300 6 189 5.4E-26 T 13-10-2018 CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 9 194 1.3E-19 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 5 445 43.621 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 SUPERFAMILY SSF52540 7 200 4.58E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 444 1.4E-41 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 SUPERFAMILY SSF52317 254 453 1.07E-31 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_09490 0a10b372ea4027336dbc59918fee4d45 459 Gene3D G3DSA:3.40.50.880 260 458 3.1E-8 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_13390 b32fe9c2a2f82a393f500d9394d55bd6 311 Gene3D G3DSA:1.10.443.10 150 310 2.1E-41 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_13390 b32fe9c2a2f82a393f500d9394d55bd6 311 Gene3D G3DSA:1.10.150.130 42 149 1.3E-5 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_13390 b32fe9c2a2f82a393f500d9394d55bd6 311 SUPERFAMILY SSF56349 47 304 1.85E-43 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_13390 b32fe9c2a2f82a393f500d9394d55bd6 311 Pfam PF00589 Phage integrase family 151 296 4.7E-21 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_13360 912e2461200957bb523ed5bcbfd4b77b 237 SUPERFAMILY SSF141868 12 235 2.88E-12 T 13-10-2018 IPR035919 EAL domain superfamily CS348_13360 912e2461200957bb523ed5bcbfd4b77b 237 Pfam PF00563 EAL domain 12 223 4.3E-10 T 13-10-2018 IPR001633 EAL domain CS348_13360 912e2461200957bb523ed5bcbfd4b77b 237 Gene3D G3DSA:3.20.20.450 1 237 1.4E-30 T 13-10-2018 IPR035919 EAL domain superfamily CS348_06440 5dd88621f0b9972c30407e10691782de 115 Gene3D G3DSA:2.30.30.790 2 115 9.8E-17 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_06440 5dd88621f0b9972c30407e10691782de 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 4.5E-53 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 Pfam PF01245 Ribosomal protein L19 3 113 1.3E-49 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 SUPERFAMILY SSF50104 2 114 8.32E-48 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CS348_06440 5dd88621f0b9972c30407e10691782de 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.609 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06440 5dd88621f0b9972c30407e10691782de 115 PIRSF PIRSF002191 1 115 2.8E-50 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 Gene3D G3DSA:3.30.465.10 69 218 4.5E-59 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 SUPERFAMILY SSF56176 3 197 1.14E-48 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 Pfam PF01565 FAD binding domain 18 149 1.4E-25 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 SUPERFAMILY SSF56194 202 339 1.83E-52 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 342 91.689 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 Gene3D G3DSA:3.90.78.10 219 342 5.2E-48 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 5 330 4.7E-124 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 Gene3D G3DSA:3.30.43.10 3 68 1.8E-21 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CS348_22920 e70e9f084cb1a163b08c719914f0ebd5 342 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 205 329 3.2E-34 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_23195 9400b4df4834e4dad8d93358078a7a47 291 SMART SM01133 51 259 5.6E-25 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_23195 9400b4df4834e4dad8d93358078a7a47 291 Pfam PF01791 DeoC/LacD family aldolase 52 258 5.6E-16 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_23195 9400b4df4834e4dad8d93358078a7a47 291 Gene3D G3DSA:3.20.20.70 1 291 1.1E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23195 9400b4df4834e4dad8d93358078a7a47 291 PIRSF PIRSF038992 31 289 1.5E-77 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_23195 9400b4df4834e4dad8d93358078a7a47 291 Hamap MF_02052 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [lsrF]. 1 291 75.558 T 13-10-2018 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase GO:0016747 CS348_23195 9400b4df4834e4dad8d93358078a7a47 291 SUPERFAMILY SSF51569 35 275 3.66E-61 T 13-10-2018 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 Gene3D G3DSA:3.90.230.10 2 264 2.6E-120 T 13-10-2018 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 1.5E-108 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 SUPERFAMILY SSF55920 3 255 3.01E-92 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.608 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 Pfam PF00557 Metallopeptidase family M24 12 242 6.3E-54 T 13-10-2018 IPR000994 Peptidase M24 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 2.5E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 2.5E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 2.5E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_19235 802bf8bef5920d3f4d8de83fbbc773a0 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 2.5E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_15380 6e652d2793967db9aba519aa3bfb11a2 382 SUPERFAMILY SSF103473 6 373 1.57E-43 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_15380 6e652d2793967db9aba519aa3bfb11a2 382 Gene3D G3DSA:1.20.1250.20 200 377 7.3E-17 T 13-10-2018 CS348_15380 6e652d2793967db9aba519aa3bfb11a2 382 Gene3D G3DSA:1.20.1250.20 3 189 2.2E-22 T 13-10-2018 CS348_15380 6e652d2793967db9aba519aa3bfb11a2 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 35.656 T 13-10-2018 IPR023745 MSF-type transporter, YcaD CS348_15380 6e652d2793967db9aba519aa3bfb11a2 382 Pfam PF07690 Major Facilitator Superfamily 11 315 1.8E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_16415 bafec87692b0fc66b7190303dae6b028 272 Gene3D G3DSA:3.30.1240.10 84 196 2.5E-59 T 13-10-2018 CS348_16415 bafec87692b0fc66b7190303dae6b028 272 Gene3D G3DSA:3.40.50.1000 5 267 2.5E-59 T 13-10-2018 IPR023214 HAD superfamily CS348_16415 bafec87692b0fc66b7190303dae6b028 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 240 4.0E-22 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_16415 bafec87692b0fc66b7190303dae6b028 272 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 13-10-2018 CS348_16415 bafec87692b0fc66b7190303dae6b028 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 2.0E-64 T 13-10-2018 CS348_16415 bafec87692b0fc66b7190303dae6b028 272 SUPERFAMILY SSF56784 1 271 9.67E-63 T 13-10-2018 IPR036412 HAD-like superfamily CS348_16415 bafec87692b0fc66b7190303dae6b028 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 8.1E-68 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_16415 bafec87692b0fc66b7190303dae6b028 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 13-10-2018 CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 250 614 3.2E-65 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 SUPERFAMILY SSF54001 10 196 1.28E-58 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 SUPERFAMILY SSF52440 379 509 8.34E-38 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 Gene3D G3DSA:3.30.1490.330 493 574 4.7E-28 T 13-10-2018 CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 Gene3D G3DSA:3.90.1720.10 1 196 3.9E-59 T 13-10-2018 CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 Pfam PF05257 CHAP domain 51 148 2.8E-11 T 13-10-2018 IPR007921 CHAP domain CS348_03595 8c761fb0d4cd1c353f926269efb1f82a 618 SUPERFAMILY SSF56059 204 613 4.68E-75 T 13-10-2018 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 Pfam PF00425 chorismate binding enzyme 193 444 2.0E-92 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 SUPERFAMILY SSF56322 5 452 1.57E-145 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 108 448 1.9E-132 T 13-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 Pfam PF04715 Anthranilate synthase component I, N terminal region 23 153 3.3E-24 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 Gene3D G3DSA:3.60.120.10 2 454 4.9E-179 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 PRINTS PR00095 Anthranilate synthase component I signature 386 400 1.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 PRINTS PR00095 Anthranilate synthase component I signature 306 319 1.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 PRINTS PR00095 Anthranilate synthase component I signature 401 415 1.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_10695 32727f0aadea96ff7c2ccf9ca2ef7ccb 454 PRINTS PR00095 Anthranilate synthase component I signature 292 305 1.2E-17 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_21995 aa574dbfdbd92dd41c4f4b937c5b1996 115 Gene3D G3DSA:3.30.70.120 1 115 8.4E-45 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CS348_21995 aa574dbfdbd92dd41c4f4b937c5b1996 115 Pfam PF03091 CutA1 divalent ion tolerance protein 15 112 5.5E-34 T 13-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 CS348_21995 aa574dbfdbd92dd41c4f4b937c5b1996 115 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 9 115 37.216 T 13-10-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 CS348_21995 aa574dbfdbd92dd41c4f4b937c5b1996 115 SUPERFAMILY SSF54913 12 114 2.37E-35 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CS348_18600 1614eab8166101592a60191bd39db488 64 SUPERFAMILY SSF55008 2 61 2.09E-14 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CS348_18600 1614eab8166101592a60191bd39db488 64 Gene3D G3DSA:3.30.70.100 1 64 2.0E-19 T 13-10-2018 CS348_18600 1614eab8166101592a60191bd39db488 64 Pfam PF00403 Heavy-metal-associated domain 3 59 1.8E-14 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 PRINTS PR00956 Flagellar motor switch protein FliN signature 292 307 5.9E-6 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 PRINTS PR00956 Flagellar motor switch protein FliN signature 246 262 5.9E-6 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 PRINTS PR00956 Flagellar motor switch protein FliN signature 263 279 5.9E-6 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 Gene3D G3DSA:2.30.330.10 237 317 4.0E-17 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 246 315 1.8E-15 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 29 315 6.9E-68 T 13-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 CS348_12985 8165b0740f4b118b23c09266762b2bb7 322 SUPERFAMILY SSF101801 247 316 7.19E-16 T 13-10-2018 IPR036429 SpoA-like superfamily CS348_15850 80f8492f8b7190ca3cf7c4c4b1fd477f 441 Pfam PF12167 Arm DNA-binding domain 16 78 3.2E-24 T 13-10-2018 IPR022000 Min27-like integrase, DNA-binding domain CS348_15850 80f8492f8b7190ca3cf7c4c4b1fd477f 441 Gene3D G3DSA:1.10.443.10 207 422 3.6E-38 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_15850 80f8492f8b7190ca3cf7c4c4b1fd477f 441 SUPERFAMILY SSF56349 91 411 4.71E-53 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_15850 80f8492f8b7190ca3cf7c4c4b1fd477f 441 Gene3D G3DSA:1.10.150.130 86 206 5.8E-14 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_15850 80f8492f8b7190ca3cf7c4c4b1fd477f 441 Pfam PF00589 Phage integrase family 212 405 2.4E-20 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_13260 992bb050dc66509c3458ba7b4dc06aca 372 Pfam PF01594 AI-2E family transporter 15 344 3.5E-62 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CS348_02430 9a52ec93e49930e1be091ab716094f96 312 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 309 3.3E-51 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 60.192 T 13-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 3.7E-139 T 13-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 PIRSF PIRSF000102 1 311 2.8E-60 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 Gene3D G3DSA:3.40.50.720 1 146 8.5E-65 T 13-10-2018 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 SUPERFAMILY SSF51735 1 145 1.2E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02430 9a52ec93e49930e1be091ab716094f96 312 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 13-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 Gene3D G3DSA:3.90.110.10 147 312 9.1E-55 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 1.2E-46 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_02430 9a52ec93e49930e1be091ab716094f96 312 SUPERFAMILY SSF56327 146 311 3.09E-42 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CS348_00320 856a1f4171d7b9cdb98cb054156d289b 397 Hamap MF_01189 Purine ribonucleoside efflux pump NepI [nepI]. 1 394 41.531 T 13-10-2018 IPR023680 Purine ribonucleoside efflux pump, NepI GO:0015211|GO:0015860|GO:0016021 CS348_00320 856a1f4171d7b9cdb98cb054156d289b 397 Gene3D G3DSA:1.20.1250.20 14 395 1.5E-42 T 13-10-2018 CS348_00320 856a1f4171d7b9cdb98cb054156d289b 397 SUPERFAMILY SSF103473 15 392 1.01E-49 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00320 856a1f4171d7b9cdb98cb054156d289b 397 Pfam PF07690 Major Facilitator Superfamily 25 344 2.0E-32 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_13795 5c8b1083c9225d11c7a251cd965b84cf 447 SUPERFAMILY SSF55909 3 441 2.16E-200 T 13-10-2018 CS348_13795 5c8b1083c9225d11c7a251cd965b84cf 447 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 440 4.3E-232 T 13-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CS348_13795 5c8b1083c9225d11c7a251cd965b84cf 447 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 441 57.033 T 13-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CS348_13795 5c8b1083c9225d11c7a251cd965b84cf 447 Gene3D G3DSA:3.75.10.20 1 447 1.7E-213 T 13-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CS348_13795 5c8b1083c9225d11c7a251cd965b84cf 447 Pfam PF04996 Succinylarginine dihydrolase 3 440 6.2E-207 T 13-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CS348_14705 895690df2fb223f6e9c1ec230f31497a 847 Gene3D G3DSA:3.90.550.10 241 468 5.0E-12 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_14705 895690df2fb223f6e9c1ec230f31497a 847 Pfam PF00535 Glycosyl transferase family 2 246 428 5.6E-22 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_14705 895690df2fb223f6e9c1ec230f31497a 847 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 64 745 51.856 T 13-10-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 CS348_14705 895690df2fb223f6e9c1ec230f31497a 847 SUPERFAMILY SSF53448 244 532 1.69E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_03590 d1eafb10a4f74ff362686e18003a4758 288 Gene3D G3DSA:3.40.30.10 19 255 1.1E-117 T 13-10-2018 CS348_03590 d1eafb10a4f74ff362686e18003a4758 288 SUPERFAMILY SSF52833 37 131 3.87E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_03590 d1eafb10a4f74ff362686e18003a4758 288 Pfam PF02798 Glutathione S-transferase, N-terminal domain 65 126 2.6E-7 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_03590 d1eafb10a4f74ff362686e18003a4758 288 Gene3D G3DSA:1.20.1050.10 133 249 1.1E-117 T 13-10-2018 CS348_03590 d1eafb10a4f74ff362686e18003a4758 288 SUPERFAMILY SSF47616 133 279 4.32E-32 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_03590 d1eafb10a4f74ff362686e18003a4758 288 Pfam PF13410 Glutathione S-transferase, C-terminal domain 174 243 5.7E-9 T 13-10-2018 CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 SUPERFAMILY SSF53383 5 391 8.34E-116 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 1.1E-235 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 56.095 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 Gene3D G3DSA:3.40.640.10 16 262 1.1E-171 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 Gene3D G3DSA:3.90.1150.10 5 376 1.1E-171 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 PIRSF PIRSF005572 2 384 3.5E-144 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CS348_06835 e579cefaee8d38a7ee1a0bbe19950093 404 Pfam PF00266 Aminotransferase class-V 5 368 1.7E-89 T 13-10-2018 IPR000192 Aminotransferase class V domain CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 624 637 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 630 5.7E-122 T 13-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 634 1.4E-289 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08420 c54d2b104fafee99dad78169f112e20d 643 Pfam PF01578 Cytochrome C assembly protein 89 296 4.2E-53 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 624 637 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 5.2E-57 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 630 5.7E-122 T 13-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.0E-93 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 634 1.4E-289 T 13-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00115 c54d2b104fafee99dad78169f112e20d 643 Pfam PF01578 Cytochrome C assembly protein 89 296 4.2E-53 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 215 257 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 SMART SM00342 178 261 7.7E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 230 245 2.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 261 2.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 SUPERFAMILY SSF51215 18 139 6.41E-14 T 13-10-2018 IPR037923 Transcription regulator HTH-like CS348_00820 9106988b8fcce90fa79335ff6952e325 271 Pfam PF12833 Helix-turn-helix domain 184 263 1.5E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 Gene3D G3DSA:1.10.10.60 156 271 4.9E-26 T 13-10-2018 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 Pfam PF02311 AraC-like ligand binding domain 26 132 3.2E-5 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_00820 9106988b8fcce90fa79335ff6952e325 271 SUPERFAMILY SSF46689 215 264 3.63E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_11275 14e7887c94172d4459a0df0c2677be3b 348 Gene3D G3DSA:3.40.1750.20 201 265 1.9E-40 T 13-10-2018 CS348_11275 14e7887c94172d4459a0df0c2677be3b 348 Gene3D G3DSA:3.90.226.10 136 300 1.9E-40 T 13-10-2018 CS348_11275 14e7887c94172d4459a0df0c2677be3b 348 SUPERFAMILY SSF52096 95 298 7.17E-32 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_11275 14e7887c94172d4459a0df0c2677be3b 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 1.7E-60 T 13-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 CS348_11275 14e7887c94172d4459a0df0c2677be3b 348 Pfam PF01343 Peptidase family S49 160 309 2.4E-48 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CS348_20820 0e7e49f6aba81ccafc2ca9292adc6cd5 357 Pfam PF01734 Patatin-like phospholipase 27 195 5.2E-19 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CS348_20820 0e7e49f6aba81ccafc2ca9292adc6cd5 357 SUPERFAMILY SSF52151 21 279 1.46E-41 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CS348_20820 0e7e49f6aba81ccafc2ca9292adc6cd5 357 Gene3D G3DSA:3.40.1090.10 17 113 5.5E-10 T 13-10-2018 CS348_20820 0e7e49f6aba81ccafc2ca9292adc6cd5 357 Gene3D G3DSA:3.40.1090.10 116 224 5.1E-7 T 13-10-2018 CS348_14320 c99ad48d8b707ef3af86229adeafc531 233 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_14320 c99ad48d8b707ef3af86229adeafc531 233 SUPERFAMILY SSF52540 5 224 4.8E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14320 c99ad48d8b707ef3af86229adeafc531 233 Gene3D G3DSA:3.40.50.300 3 230 1.1E-69 T 13-10-2018 CS348_14320 c99ad48d8b707ef3af86229adeafc531 233 SMART SM00382 34 222 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_14320 c99ad48d8b707ef3af86229adeafc531 233 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 224 6.8E-112 T 13-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 CS348_14320 c99ad48d8b707ef3af86229adeafc531 233 Pfam PF00005 ABC transporter 25 173 2.9E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 Gene3D G3DSA:2.20.28.140 1 34 8.3E-19 T 13-10-2018 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 Gene3D G3DSA:3.40.30.10 35 139 1.0E-34 T 13-10-2018 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 SUPERFAMILY SSF52833 24 139 2.45E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 PRINTS PR00421 Thioredoxin family signature 55 63 1.7E-9 T 13-10-2018 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 PRINTS PR00421 Thioredoxin family signature 103 114 1.7E-9 T 13-10-2018 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 PRINTS PR00421 Thioredoxin family signature 63 72 1.7E-9 T 13-10-2018 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 TIGRFAM TIGR01068 thioredoxin: thioredoxin 45 138 1.7E-36 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 PIRSF PIRSF000077 36 139 2.3E-32 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 Pfam PF00085 Thioredoxin 37 137 1.0E-27 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CS348_06550 e806ffc48a6d8a515f1c515e44c25842 139 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_10115 2ad0fd1999cee62b05db40343681bf80 194 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 3 194 2.0E-110 T 13-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 CS348_10115 2ad0fd1999cee62b05db40343681bf80 194 Pfam PF05280 Flagellar transcriptional activator (FlhC) 3 174 2.7E-81 T 13-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 CS348_10115 2ad0fd1999cee62b05db40343681bf80 194 SUPERFAMILY SSF160930 7 162 3.01E-64 T 13-10-2018 CS348_10115 2ad0fd1999cee62b05db40343681bf80 194 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 3 188 45.343 T 13-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 CS348_10115 2ad0fd1999cee62b05db40343681bf80 194 PIRSF PIRSF003159 3 183 1.9E-90 T 13-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 CS348_01260 dc2b4fc940ab89b4e6c87f093a066902 423 SMART SM00014 173 292 6.8E-9 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_01260 dc2b4fc940ab89b4e6c87f093a066902 423 Gene3D G3DSA:1.20.144.10 93 318 5.7E-50 T 13-10-2018 CS348_01260 dc2b4fc940ab89b4e6c87f093a066902 423 Pfam PF01569 PAP2 superfamily 183 284 2.7E-14 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_01260 dc2b4fc940ab89b4e6c87f093a066902 423 SUPERFAMILY SSF48317 100 310 3.27E-32 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CS348_16075 f008382acaafba9f524950fcd4aac006 441 Gene3D G3DSA:3.80.30.20 138 379 5.5E-77 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_16075 f008382acaafba9f524950fcd4aac006 441 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 9 438 2.7E-201 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 CS348_16075 f008382acaafba9f524950fcd4aac006 441 SMART SM00729 140 365 1.5E-55 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_16075 f008382acaafba9f524950fcd4aac006 441 Pfam PF04055 Radical SAM superfamily 146 323 1.1E-30 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_16075 f008382acaafba9f524950fcd4aac006 441 Gene3D G3DSA:2.40.50.140 380 441 2.7E-22 T 13-10-2018 CS348_16075 f008382acaafba9f524950fcd4aac006 441 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 9 438 6.9E-111 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CS348_16075 f008382acaafba9f524950fcd4aac006 441 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 144 164 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CS348_16075 f008382acaafba9f524950fcd4aac006 441 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 8 440 64.051 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 CS348_16075 f008382acaafba9f524950fcd4aac006 441 SUPERFAMILY SSF102114 110 371 1.57E-54 T 13-10-2018 CS348_16075 f008382acaafba9f524950fcd4aac006 441 Gene3D G3DSA:3.40.50.12160 9 134 2.9E-29 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CS348_16075 f008382acaafba9f524950fcd4aac006 441 Pfam PF00919 Uncharacterized protein family UPF0004 9 95 2.3E-21 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CS348_18400 32bca4a64ce844c53683b0f846aa3092 302 Pfam PF00480 ROK family 3 299 4.7E-94 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_18400 32bca4a64ce844c53683b0f846aa3092 302 SUPERFAMILY SSF53067 3 299 1.53E-61 T 13-10-2018 CS348_18400 32bca4a64ce844c53683b0f846aa3092 302 ProSitePatterns PS01125 ROK family signature. 130 157 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_18400 32bca4a64ce844c53683b0f846aa3092 302 Gene3D G3DSA:3.30.420.40 4 296 2.6E-81 T 13-10-2018 CS348_18400 32bca4a64ce844c53683b0f846aa3092 302 Gene3D G3DSA:3.30.420.40 119 289 2.6E-81 T 13-10-2018 CS348_16490 d3d259ce407b837ba70293979af0da08 258 Gene3D G3DSA:3.40.50.300 4 254 7.0E-57 T 13-10-2018 CS348_16490 d3d259ce407b837ba70293979af0da08 258 Pfam PF00005 ABC transporter 27 164 1.3E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16490 d3d259ce407b837ba70293979af0da08 258 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_16490 d3d259ce407b837ba70293979af0da08 258 SMART SM00382 29 214 2.9E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16490 d3d259ce407b837ba70293979af0da08 258 SUPERFAMILY SSF52540 6 229 1.66E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24195 339f7be8736783d5d603a42cb64abf61 376 SUPERFAMILY SSF53756 2 373 9.71E-143 T 13-10-2018 CS348_24195 339f7be8736783d5d603a42cb64abf61 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 21 370 3.6E-128 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_24195 339f7be8736783d5d603a42cb64abf61 376 Gene3D G3DSA:3.40.50.2000 187 356 1.7E-153 T 13-10-2018 CS348_24195 339f7be8736783d5d603a42cb64abf61 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 2.6E-177 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 CS348_24195 339f7be8736783d5d603a42cb64abf61 376 Gene3D G3DSA:3.40.50.2000 2 367 1.7E-153 T 13-10-2018 CS348_24195 339f7be8736783d5d603a42cb64abf61 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 70.25 T 13-10-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 CS348_10215 a26f8693668337d5ad04edbf9cb23c67 247 Gene3D G3DSA:3.40.50.150 18 247 5.6E-67 T 13-10-2018 CS348_10215 a26f8693668337d5ad04edbf9cb23c67 247 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 5.0E-134 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 CS348_10215 a26f8693668337d5ad04edbf9cb23c67 247 PIRSF PIRSF006325 1 243 3.5E-135 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 CS348_10215 a26f8693668337d5ad04edbf9cb23c67 247 Pfam PF13649 Methyltransferase domain 60 158 1.5E-14 T 13-10-2018 CS348_10215 a26f8693668337d5ad04edbf9cb23c67 247 SUPERFAMILY SSF53335 20 242 5.98E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_10215 a26f8693668337d5ad04edbf9cb23c67 247 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 43.122 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 246 268 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 294 312 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 126 149 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 65 81 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 269 291 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 327 350 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 312 327 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 2 15 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 21 38 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 PRINTS PR01007 Flagellar hook-length control protein signature 390 406 2.3E-110 T 13-10-2018 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 Pfam PF02120 Flagellar hook-length control protein FliK 279 360 1.7E-20 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal CS348_09870 8c7f17927501e203a32d51fdf596ebb5 407 Gene3D G3DSA:3.30.750.140 258 372 1.7E-40 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily CS348_14485 211eeaac246f953b67ca2ccd0477fe3b 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.2E-18 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_14485 211eeaac246f953b67ca2ccd0477fe3b 57 Pfam PF01783 Ribosomal L32p protein family 2 57 1.9E-19 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_14485 211eeaac246f953b67ca2ccd0477fe3b 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 55 16.352 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_14485 211eeaac246f953b67ca2ccd0477fe3b 57 SUPERFAMILY SSF57829 2 55 1.53E-18 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CS348_06220 a094087cd7eeffcf8b89611c90964400 371 Gene3D G3DSA:3.40.50.2000 1 361 7.2E-99 T 13-10-2018 CS348_06220 a094087cd7eeffcf8b89611c90964400 371 Pfam PF06722 Protein of unknown function (DUF1205) 165 260 4.6E-37 T 13-10-2018 IPR010610 Domain of unknown function DUF1205 CS348_06220 a094087cd7eeffcf8b89611c90964400 371 SUPERFAMILY SSF53756 1 370 5.23E-71 T 13-10-2018 CS348_06220 a094087cd7eeffcf8b89611c90964400 371 Gene3D G3DSA:3.40.50.2000 197 352 7.2E-99 T 13-10-2018 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 Gene3D G3DSA:1.10.300.10 102 201 6.0E-108 T 13-10-2018 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 2.1E-210 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 SUPERFAMILY SSF52540 3 431 1.38E-180 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 1.3E-178 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 Gene3D G3DSA:3.40.440.10 6 249 6.0E-108 T 13-10-2018 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 SMART SM00788 4 425 1.7E-301 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 Gene3D G3DSA:3.90.170.10 267 432 2.9E-70 T 13-10-2018 CS348_21790 b8c6d955cfa8844dec78fdaacd6cbba5 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 218.554 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 Gene3D G3DSA:3.40.50.1220 185 313 1.3E-46 T 13-10-2018 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 255 281 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 PIRSF PIRSF000089 3 313 1.8E-81 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 6.0E-29 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 SMART SM00893 7 180 2.2E-15 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 SUPERFAMILY SSF52402 6 175 8.37E-22 T 13-10-2018 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 Gene3D G3DSA:3.40.50.620 3 180 4.2E-27 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 SUPERFAMILY SSF52467 190 310 2.73E-40 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 Hamap MF_01056 Protein FixB [fixB]. 1 313 57.665 T 13-10-2018 IPR023461 Electron transfer flavoprotein FixB subunit GO:0009437 CS348_19975 1d4ad7f6a2580e211ece2fe9e5235274 313 Pfam PF01012 Electron transfer flavoprotein domain 24 168 1.9E-14 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_17945 93c8b80ef1f5b35e6a9326b0a50e9bdb 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 11 178 2.9E-73 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 CS348_17945 93c8b80ef1f5b35e6a9326b0a50e9bdb 183 Gene3D G3DSA:3.40.50.2020 1 183 3.1E-69 T 13-10-2018 CS348_17945 93c8b80ef1f5b35e6a9326b0a50e9bdb 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 11 180 38.163 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 CS348_17945 93c8b80ef1f5b35e6a9326b0a50e9bdb 183 SUPERFAMILY SSF53271 13 180 6.53E-53 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_17945 93c8b80ef1f5b35e6a9326b0a50e9bdb 183 Pfam PF00156 Phosphoribosyl transferase domain 31 156 5.1E-15 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CS348_22460 782356355b73a528ee99fce40631dd9b 359 Pfam PF00842 Alanine racemase, C-terminal domain 234 357 1.5E-39 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 TIGRFAM TIGR00492 alr: alanine racemase 3 359 6.7E-145 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 SMART SM01005 234 358 4.3E-62 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 SUPERFAMILY SSF50621 227 359 2.89E-44 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_22460 782356355b73a528ee99fce40631dd9b 359 Hamap MF_01201 Alanine racemase. 1 358 34.66 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 SUPERFAMILY SSF51419 8 235 7.56E-68 T 13-10-2018 IPR029066 PLP-binding barrel CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 267 282 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 288 305 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 26 42 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 192 219 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 155 166 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 340 353 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 250 265 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 60 78 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 PRINTS PR00992 Alanine racemase signature 120 132 4.8E-76 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_22460 782356355b73a528ee99fce40631dd9b 359 Gene3D G3DSA:3.20.20.10 10 217 3.8E-137 T 13-10-2018 IPR029066 PLP-binding barrel CS348_22460 782356355b73a528ee99fce40631dd9b 359 Gene3D G3DSA:2.40.37.10 8 353 3.8E-137 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_22460 782356355b73a528ee99fce40631dd9b 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 8.0E-70 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_16805 75a73fb8db5b43d4adedfeb8fcc6c711 467 Gene3D G3DSA:3.50.50.60 2 454 8.8E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16805 75a73fb8db5b43d4adedfeb8fcc6c711 467 SUPERFAMILY SSF56425 234 395 3.0E-24 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16805 75a73fb8db5b43d4adedfeb8fcc6c711 467 TIGRFAM TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ 2 459 1.8E-205 T 13-10-2018 IPR012831 Precorrin 3B synthase CobZ CS348_16805 75a73fb8db5b43d4adedfeb8fcc6c711 467 Gene3D G3DSA:3.90.700.10 235 396 8.8E-91 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16805 75a73fb8db5b43d4adedfeb8fcc6c711 467 Pfam PF00890 FAD binding domain 3 431 6.3E-33 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16805 75a73fb8db5b43d4adedfeb8fcc6c711 467 SUPERFAMILY SSF51905 2 461 4.45E-36 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_07610 c39a14c43433aaea4b3d6b1a57fda416 412 SUPERFAMILY SSF53383 10 394 2.45E-107 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_07610 c39a14c43433aaea4b3d6b1a57fda416 412 Gene3D G3DSA:3.90.1150.10 294 392 4.9E-136 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_07610 c39a14c43433aaea4b3d6b1a57fda416 412 Gene3D G3DSA:3.40.640.10 70 293 4.9E-136 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_07610 c39a14c43433aaea4b3d6b1a57fda416 412 Pfam PF00155 Aminotransferase class I and II 37 381 3.6E-60 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 257 447 2.2E-64 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 SUPERFAMILY SSF51366 1 251 2.71E-84 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 SUPERFAMILY SSF51366 257 450 4.55E-59 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 Gene3D G3DSA:3.20.20.70 256 446 1.4E-186 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 50 68 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 255 452 31.314 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 Gene3D G3DSA:3.20.20.70 8 255 1.4E-186 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 Pfam PF00218 Indole-3-glycerol phosphate synthase 5 251 1.6E-97 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CS348_11230 8bb3ec966d99785745a6a386676b5660 452 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 3 254 35.271 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 SUPERFAMILY SSF52540 1 206 2.47E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 Gene3D G3DSA:1.20.272.10 208 329 3.3E-44 T 13-10-2018 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 Pfam PF13177 DNA polymerase III, delta subunit 10 166 2.9E-41 T 13-10-2018 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 SUPERFAMILY SSF48019 208 328 8.33E-37 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 Gene3D G3DSA:3.40.50.300 1 167 8.9E-51 T 13-10-2018 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 Gene3D G3DSA:1.10.8.10 168 207 1.8E-18 T 13-10-2018 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 12 201 1.5E-60 T 13-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_14405 bd3a30b825bff7f6a2417b401d9fd922 334 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 208 320 1.6E-35 T 13-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_16460 852db19d8112c5b1794995661a6795df 338 SUPERFAMILY SSF51735 1 336 1.34E-100 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_16460 852db19d8112c5b1794995661a6795df 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 3.4E-65 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_16460 852db19d8112c5b1794995661a6795df 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 8.6E-149 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CS348_16460 852db19d8112c5b1794995661a6795df 338 Gene3D G3DSA:3.40.50.720 3 262 1.7E-148 T 13-10-2018 CS348_16460 852db19d8112c5b1794995661a6795df 338 Gene3D G3DSA:3.90.25.10 182 328 1.7E-148 T 13-10-2018 CS348_18345 6cd66fc1d2b30b3eee577353748e9daf 354 SUPERFAMILY SSF111337 1 343 5.1E-138 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CS348_18345 6cd66fc1d2b30b3eee577353748e9daf 354 Gene3D G3DSA:3.40.1780.10 14 343 2.5E-118 T 13-10-2018 CS348_18345 6cd66fc1d2b30b3eee577353748e9daf 354 Pfam PF02547 Queuosine biosynthesis protein 4 343 8.6E-133 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CS348_18345 6cd66fc1d2b30b3eee577353748e9daf 354 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 344 2.8E-167 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CS348_18345 6cd66fc1d2b30b3eee577353748e9daf 354 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 47.582 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CS348_18345 6cd66fc1d2b30b3eee577353748e9daf 354 Gene3D G3DSA:2.40.10.240 64 163 2.5E-118 T 13-10-2018 CS348_05395 5228cbe903bf3ad9a4ca03a0f31e1660 253 SUPERFAMILY SSF64167 1 246 1.44E-82 T 13-10-2018 CS348_05395 5228cbe903bf3ad9a4ca03a0f31e1660 253 Pfam PF01975 Survival protein SurE 3 180 1.6E-56 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CS348_05395 5228cbe903bf3ad9a4ca03a0f31e1660 253 Gene3D G3DSA:3.40.1210.10 1 253 6.9E-110 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CS348_05395 5228cbe903bf3ad9a4ca03a0f31e1660 253 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 249 40.11 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CS348_05395 5228cbe903bf3ad9a4ca03a0f31e1660 253 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 1.6E-76 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 SUPERFAMILY SSF46689 10 61 1.08E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 SMART SM00871 134 288 1.6E-42 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 2.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 2.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 Pfam PF06445 GyrI-like small molecule binding domain 134 288 4.9E-38 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 Gene3D G3DSA:1.10.10.60 8 68 1.5E-12 T 13-10-2018 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 Pfam PF12833 Helix-turn-helix domain 33 112 2.8E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 SUPERFAMILY SSF46689 63 120 2.91E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 Gene3D G3DSA:3.20.80.10 134 288 3.5E-39 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 SMART SM00342 27 111 4.0E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 SUPERFAMILY SSF55136 134 288 2.62E-38 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 64 107 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_03370 cdce024bf2a6aa432b2b60a262c0bd02 288 Gene3D G3DSA:1.10.10.60 69 126 1.1E-14 T 13-10-2018 CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 SUPERFAMILY SSF74650 45 422 1.73E-147 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 PIRSF PIRSF006281 1 538 1.1E-201 T 13-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 Gene3D G3DSA:2.70.98.10 44 423 8.4E-147 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 45 534 1.7E-181 T 13-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 Hamap MF_01068 Glucans biosynthesis protein D [mdoD]. 1 544 60.053 T 13-10-2018 IPR023724 Glucan biosynthesis, MdoD CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 Gene3D G3DSA:2.60.40.10 425 544 1.2E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 SUPERFAMILY SSF81296 422 537 1.12E-27 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_11865 83db8e907bbd7f14d1c099ba2dfa907a 551 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 2 32 0.0013 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_24805 1408566fdd391fca79b6395a52d11c9b 80 SUPERFAMILY SSF54786 15 78 1.14E-30 T 13-10-2018 CS348_24805 1408566fdd391fca79b6395a52d11c9b 80 Pfam PF06006 Bacterial protein of unknown function (DUF905) 10 78 4.8E-44 T 13-10-2018 IPR009253 Protein of unknown function DUF905 CS348_24805 1408566fdd391fca79b6395a52d11c9b 80 ProDom PD028015 PLASMID YKFF YDEA R0111 YPJI YPMT1.60C C4569 AEC70 PSLT067 YFJA 7 80 1.0E-33 T 13-10-2018 IPR009253 Protein of unknown function DUF905 CS348_24805 1408566fdd391fca79b6395a52d11c9b 80 Gene3D G3DSA:3.30.160.130 6 80 6.2E-36 T 13-10-2018 IPR038612 YkfF-like domain superfamily CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 806 0.0 T 13-10-2018 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1087 0.0 T 13-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 SUPERFAMILY SSF52540 1 346 1.17E-127 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Gene3D G3DSA:1.10.486.10 456 664 1.2E-204 T 13-10-2018 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Gene3D G3DSA:1.10.10.990 864 935 1.1E-32 T 13-10-2018 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1123 21.192 T 13-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Gene3D G3DSA:1.10.10.160 79 187 2.9E-135 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Gene3D G3DSA:3.40.50.10930 4 315 2.9E-135 T 13-10-2018 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 PIRSF PIRSF000980 1 1123 0.0 T 13-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 Gene3D G3DSA:3.40.50.300 334 808 1.2E-204 T 13-10-2018 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 SUPERFAMILY SSF52980 820 1120 9.12E-97 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_05020 4be22245187c3906e1f3a12c771809ad 1123 SUPERFAMILY SSF52540 363 812 3.51E-105 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08045 6fa4521cfce326b9b1980eb42c8c8e22 180 Gene3D G3DSA:3.30.70.3270 33 175 2.3E-43 T 13-10-2018 CS348_08045 6fa4521cfce326b9b1980eb42c8c8e22 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08045 6fa4521cfce326b9b1980eb42c8c8e22 180 SUPERFAMILY SSF54862 33 153 5.02E-29 T 13-10-2018 CS348_08045 6fa4521cfce326b9b1980eb42c8c8e22 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 163 26.938 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08045 6fa4521cfce326b9b1980eb42c8c8e22 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 1.3E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08045 6fa4521cfce326b9b1980eb42c8c8e22 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 1.4E-51 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_02715 6446d1c7ae0567360f40e3cfae67425c 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 3.5E-45 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02715 6446d1c7ae0567360f40e3cfae67425c 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02715 6446d1c7ae0567360f40e3cfae67425c 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.1E-37 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02715 6446d1c7ae0567360f40e3cfae67425c 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.814 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02715 6446d1c7ae0567360f40e3cfae67425c 103 SUPERFAMILY SSF141091 1 102 3.01E-37 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 560 622 1.8E-10 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Gene3D G3DSA:3.30.413.10 632 792 5.3E-31 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 633 757 1.6E-14 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 SUPERFAMILY SSF56014 633 808 8.64E-47 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Gene3D G3DSA:3.50.50.60 8 283 1.2E-83 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 SUPERFAMILY SSF51905 1 310 2.22E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 292 1.5E-51 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 3.0E-11 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 3.0E-11 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.0E-11 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 3.0E-11 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 679 695 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Gene3D G3DSA:1.10.10.1100 423 477 2.5E-11 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 5.9E-14 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 5.9E-14 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 5.9E-14 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 5.9E-14 T 13-10-2018 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 SUPERFAMILY SSF55124 502 627 2.45E-31 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00397 Sirohaem Fe-binding site signature 679 697 7.9E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PRINTS PR00397 Sirohaem Fe-binding site signature 636 654 7.9E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 PIRSF PIRSF037149 1 835 0.0 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Gene3D G3DSA:3.50.50.60 110 246 1.2E-83 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 801 0.0 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 CS348_01810 65eddf4db2b13908deccd7b4e3641b7f 847 Pfam PF04324 BFD-like [2Fe-2S] binding domain 424 471 8.4E-15 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CS348_10635 cf7b48a6a40ed7bd0d327e336d7e0ae8 269 SUPERFAMILY SSF53335 4 259 3.19E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_10635 cf7b48a6a40ed7bd0d327e336d7e0ae8 269 PIRSF PIRSF018249 1 268 6.1E-90 T 13-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 CS348_10635 cf7b48a6a40ed7bd0d327e336d7e0ae8 269 Pfam PF13847 Methyltransferase domain 84 197 2.2E-16 T 13-10-2018 IPR025714 Methyltransferase domain CS348_10635 cf7b48a6a40ed7bd0d327e336d7e0ae8 269 Gene3D G3DSA:3.40.50.150 1 269 6.7E-92 T 13-10-2018 CS348_17665 d966590e6290d487c26742acec1e01d5 395 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 100 148 6.9E-6 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CS348_17665 d966590e6290d487c26742acec1e01d5 395 Pfam PF00589 Phage integrase family 209 370 3.4E-22 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_17665 d966590e6290d487c26742acec1e01d5 395 Gene3D G3DSA:1.10.443.10 214 380 6.2E-20 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_17665 d966590e6290d487c26742acec1e01d5 395 Gene3D G3DSA:1.10.150.130 95 209 1.6E-31 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_17665 d966590e6290d487c26742acec1e01d5 395 Pfam PF13356 Arm DNA-binding domain 3 88 1.3E-20 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CS348_17665 d966590e6290d487c26742acec1e01d5 395 SUPERFAMILY SSF56349 99 380 8.54E-62 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_17665 d966590e6290d487c26742acec1e01d5 395 Gene3D G3DSA:3.30.160.390 1 88 3.2E-34 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CS348_13725 51d816a24602891505aa82ccb3d95879 750 SUPERFAMILY SSF52317 596 704 6.3E-14 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_13725 51d816a24602891505aa82ccb3d95879 750 PRINTS PR00067 Catalase signature 363 390 3.7E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 PRINTS PR00067 Catalase signature 194 212 3.7E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 PRINTS PR00067 Catalase signature 154 172 3.7E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 PRINTS PR00067 Catalase signature 175 192 3.7E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 PRINTS PR00067 Catalase signature 91 114 3.7E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 PRINTS PR00067 Catalase signature 395 421 3.7E-67 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 Gene3D G3DSA:1.20.1370.20 493 596 4.1E-40 T 13-10-2018 CS348_13725 51d816a24602891505aa82ccb3d95879 750 SUPERFAMILY SSF56634 45 580 1.14E-223 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 PIRSF PIRSF038927 43 748 0.0 T 13-10-2018 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 CS348_13725 51d816a24602891505aa82ccb3d95879 750 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 408 416 - T 13-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 ProSitePatterns PS00438 Catalase proximal active site signature. 114 130 - T 13-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 Gene3D G3DSA:3.40.50.880 597 750 1.4E-37 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_13725 51d816a24602891505aa82ccb3d95879 750 SMART SM01060 78 466 5.5E-275 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 Gene3D G3DSA:2.40.180.10 1 490 1.3E-247 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 CS348_13725 51d816a24602891505aa82ccb3d95879 750 Pfam PF06628 Catalase-related immune-responsive 496 559 3.8E-17 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13725 51d816a24602891505aa82ccb3d95879 750 Pfam PF00199 Catalase 78 463 3.0E-178 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CS348_13770 c69a14d0218d5f71a650590c3eba9741 275 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 18 268 46.697 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 CS348_13770 c69a14d0218d5f71a650590c3eba9741 275 Pfam PF02540 NAD synthase 23 265 1.2E-76 T 13-10-2018 IPR022310 NAD/GMP synthase CS348_13770 c69a14d0218d5f71a650590c3eba9741 275 Gene3D G3DSA:3.40.50.620 1 275 6.9E-78 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_13770 c69a14d0218d5f71a650590c3eba9741 275 SUPERFAMILY SSF52402 3 273 6.16E-84 T 13-10-2018 CS348_13770 c69a14d0218d5f71a650590c3eba9741 275 TIGRFAM TIGR00552 nadE: NAD+ synthetase 17 275 4.5E-84 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 CS348_06420 4c459cd87be07796496a7982c07ce691 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 6.4E-23 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 1.0E-75 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Gene3D G3DSA:3.40.50.300 90 285 3.8E-125 T 13-10-2018 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Gene3D G3DSA:1.20.120.140 4 305 3.8E-125 T 13-10-2018 CS348_06420 4c459cd87be07796496a7982c07ce691 453 SMART SM00962 100 296 4.0E-120 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 35.067 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 SMART SM00963 1 86 2.4E-37 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Pfam PF02978 Signal peptide binding domain 329 427 1.5E-33 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 SUPERFAMILY SSF47446 298 431 7.06E-47 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 SUPERFAMILY SSF52540 42 354 1.2E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06420 4c459cd87be07796496a7982c07ce691 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 1.2E-181 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 CS348_06420 4c459cd87be07796496a7982c07ce691 453 Gene3D G3DSA:1.10.260.30 328 450 2.8E-47 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CS348_06420 4c459cd87be07796496a7982c07ce691 453 SMART SM00382 99 247 7.8E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01305 1c0bd57d08e357467cf432219200c344 913 Pfam PF00005 ABC transporter 28 175 4.1E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01305 1c0bd57d08e357467cf432219200c344 913 Gene3D G3DSA:3.40.50.300 266 515 6.1E-65 T 13-10-2018 CS348_01305 1c0bd57d08e357467cf432219200c344 913 Gene3D G3DSA:3.40.50.300 8 252 2.7E-58 T 13-10-2018 CS348_01305 1c0bd57d08e357467cf432219200c344 913 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01305 1c0bd57d08e357467cf432219200c344 913 Pfam PF00005 ABC transporter 293 436 3.5E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01305 1c0bd57d08e357467cf432219200c344 913 Pfam PF12698 ABC-2 family transporter protein 570 905 5.3E-40 T 13-10-2018 CS348_01305 1c0bd57d08e357467cf432219200c344 913 SMART SM00382 301 486 3.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01305 1c0bd57d08e357467cf432219200c344 913 SMART SM00382 37 225 6.5E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01305 1c0bd57d08e357467cf432219200c344 913 SUPERFAMILY SSF52540 267 499 7.34E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01305 1c0bd57d08e357467cf432219200c344 913 SUPERFAMILY SSF52540 14 239 7.92E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02685 893f6d85518b79eb0ec74731246a2483 211 PIRSF PIRSF004649 1 211 2.2E-63 T 13-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC CS348_02685 893f6d85518b79eb0ec74731246a2483 211 Pfam PF05494 MlaC protein 33 198 1.9E-54 T 13-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC CS348_02685 893f6d85518b79eb0ec74731246a2483 211 Gene3D G3DSA:3.10.450.710 23 206 3.4E-43 T 13-10-2018 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.4E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 Gene3D G3DSA:3.40.50.2300 61 305 2.8E-72 T 13-10-2018 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 Gene3D G3DSA:3.40.50.2300 160 289 2.8E-72 T 13-10-2018 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 SUPERFAMILY SSF47413 1 56 3.75E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 Pfam PF13377 Periplasmic binding protein-like domain 168 329 4.4E-37 T 13-10-2018 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 Gene3D G3DSA:1.10.260.40 1 58 1.9E-21 T 13-10-2018 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.1E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.1E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 SMART SM00354 1 71 1.1E-27 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12240 92b9b8c5457e26f2a78b111a08f11bc3 335 SUPERFAMILY SSF53822 61 331 1.85E-83 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_20135 1e9689c35cca86343d9660859a25cb51 312 Gene3D G3DSA:3.40.50.620 1 186 9.9E-61 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_20135 1e9689c35cca86343d9660859a25cb51 312 SUPERFAMILY SSF82114 174 307 1.94E-43 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 Pfam PF06574 FAD synthetase 12 167 1.2E-57 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 PIRSF PIRSF004491 1 311 2.4E-103 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 Gene3D G3DSA:2.40.30.30 188 309 1.5E-38 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 SUPERFAMILY SSF52374 15 175 1.01E-33 T 13-10-2018 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 4.2E-118 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 Pfam PF01687 Riboflavin kinase 184 306 3.3E-37 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 CS348_20135 1e9689c35cca86343d9660859a25cb51 312 SMART SM00904 183 307 8.0E-62 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 CS348_15230 10028504bab4a1a5aab413143911d49c 396 Pfam PF00155 Aminotransferase class I and II 28 392 1.1E-95 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_15230 10028504bab4a1a5aab413143911d49c 396 Gene3D G3DSA:3.90.1150.10 11 391 7.1E-165 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_15230 10028504bab4a1a5aab413143911d49c 396 SUPERFAMILY SSF53383 1 396 6.05E-119 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_15230 10028504bab4a1a5aab413143911d49c 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 1.5E-39 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_15230 10028504bab4a1a5aab413143911d49c 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 1.5E-39 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_15230 10028504bab4a1a5aab413143911d49c 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 1.5E-39 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_15230 10028504bab4a1a5aab413143911d49c 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 1.5E-39 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CS348_15230 10028504bab4a1a5aab413143911d49c 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 13-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 CS348_15230 10028504bab4a1a5aab413143911d49c 396 Gene3D G3DSA:3.40.640.10 45 315 7.1E-165 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_06680 12c3a0df136b6270755768786fa9b849 398 SUPERFAMILY SSF103473 5 388 6.67E-50 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_06680 12c3a0df136b6270755768786fa9b849 398 Gene3D G3DSA:1.20.1250.20 2 390 1.4E-54 T 13-10-2018 CS348_06680 12c3a0df136b6270755768786fa9b849 398 Pfam PF07690 Major Facilitator Superfamily 25 234 1.6E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_06680 12c3a0df136b6270755768786fa9b849 398 Pfam PF07690 Major Facilitator Superfamily 247 388 4.0E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_25485 1b76c1ca0147763cb488e915f969f090 222 Pfam PF05857 TraX protein 1 215 2.4E-25 T 13-10-2018 IPR008875 TraX CS348_20930 2f822ff5743e221d81e5681626ac118d 763 Gene3D G3DSA:3.40.720.10 154 449 7.1E-42 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_20930 2f822ff5743e221d81e5681626ac118d 763 Pfam PF00884 Sulfatase 163 446 2.9E-23 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_20930 2f822ff5743e221d81e5681626ac118d 763 SUPERFAMILY SSF53649 161 469 1.79E-31 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_20930 2f822ff5743e221d81e5681626ac118d 763 Hamap MF_01070 Phosphoglycerol transferase I [mdoB]. 6 738 56.58 T 13-10-2018 IPR020881 Phosphoglycerol transferase I GO:0005886|GO:0008960|GO:0009250 KEGG: 00561+2.7.8.20 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 7.9E-96 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 Gene3D G3DSA:3.30.2350.10 1 249 4.6E-101 T 13-10-2018 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 SUPERFAMILY SSF88697 251 310 6.96E-14 T 13-10-2018 IPR015947 PUA-like superfamily CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 6.7E-58 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 Gene3D G3DSA:2.30.130.10 250 314 3.2E-29 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 SUPERFAMILY SSF55120 10 246 7.77E-86 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 19.047 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 4.0E-18 T 13-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_02820 3a7e73c89f85b010115b0879ba349f35 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 247 8.9E-22 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 116 130 8.9E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 158 8.9E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 130 146 8.9E-6 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 SUPERFAMILY SSF46894 98 166 3.4E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 Gene3D G3DSA:1.10.10.10 88 173 1.9E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 Pfam PF00196 Bacterial regulatory proteins, luxR family 115 161 1.7E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_14040 ad95774e1dd8783f4bec99145d7f2a27 197 SMART SM00421 113 170 1.7E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 13 332 2.5E-184 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 Gene3D G3DSA:3.40.190.10 32 301 2.4E-122 T 13-10-2018 CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 ProSitePatterns PS00401 Prokaryotic sulfate-binding proteins signature 1. 53 65 - T 13-10-2018 IPR000957 Sulphate/thiosulphate-binding, conserved site CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 151 159 - T 13-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 SUPERFAMILY SSF53850 24 332 8.86E-80 T 13-10-2018 CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 Gene3D G3DSA:3.40.190.10 120 331 2.4E-122 T 13-10-2018 CS348_07350 cadd8f5c28cdfe902ca3cc690f33171e 338 Pfam PF13531 Bacterial extracellular solute-binding protein 38 286 7.2E-40 T 13-10-2018 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 3.0E-139 T 13-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 Gene3D G3DSA:3.30.9.50 78 267 8.6E-96 T 13-10-2018 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 13-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 Gene3D G3DSA:3.50.50.60 3 336 8.6E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 SUPERFAMILY SSF51905 2 381 1.57E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 387 9.1E-132 T 13-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 4.8E-12 T 13-10-2018 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 4.8E-12 T 13-10-2018 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 4.8E-12 T 13-10-2018 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 4.8E-12 T 13-10-2018 CS348_04680 fdd7033c08889f25de33ffae872e5a58 392 Pfam PF01494 FAD binding domain 2 321 4.6E-19 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SUPERFAMILY SSF52335 938 1071 1.44E-34 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Gene3D G3DSA:3.40.50.20 554 663 9.1E-50 T 13-10-2018 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Gene3D G3DSA:3.40.50.1380 937 1073 4.9E-36 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SUPERFAMILY SSF48108 396 554 1.96E-52 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SUPERFAMILY SSF56059 674 934 2.47E-105 T 13-10-2018 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SUPERFAMILY SSF52440 1 127 2.73E-50 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 3.7E-77 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 4.4E-39 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.396 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Pfam PF02142 MGS-like domain 957 1041 7.6E-18 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Gene3D G3DSA:3.40.50.20 1 116 5.5E-51 T 13-10-2018 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SMART SM00851 956 1042 2.6E-29 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.4E-64 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Gene3D G3DSA:3.30.470.20 119 403 3.3E-133 T 13-10-2018 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.206 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Gene3D G3DSA:3.30.470.20 666 936 4.7E-129 T 13-10-2018 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 6.0E-40 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SMART SM01096 424 547 2.2E-73 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 Gene3D G3DSA:1.10.1030.10 404 553 2.8E-54 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SUPERFAMILY SSF56059 128 401 3.18E-110 T 13-10-2018 CS348_20025 d92e14c7bdb8363e8b89b8b9a8fd99dd 1075 SUPERFAMILY SSF52440 557 676 1.44E-49 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_24410 cdbd3e90580df6a42e3fdd3ea42282a6 483 Pfam PF05762 VWA domain containing CoxE-like protein 305 458 1.8E-10 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like CS348_24410 cdbd3e90580df6a42e3fdd3ea42282a6 483 SUPERFAMILY SSF53300 318 459 1.37E-17 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CS348_24410 cdbd3e90580df6a42e3fdd3ea42282a6 483 Gene3D G3DSA:3.40.50.410 319 463 4.4E-6 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CS348_24410 cdbd3e90580df6a42e3fdd3ea42282a6 483 SMART SM00327 319 483 1.6E-12 T 13-10-2018 IPR002035 von Willebrand factor, type A CS348_24410 cdbd3e90580df6a42e3fdd3ea42282a6 483 Hamap MF_01626 Protein ViaA [viaA]. 1 483 58.213 T 13-10-2018 IPR023481 Uncharacterised protein family ViaA CS348_02340 d04164b2eb45b367b4060527fa22e108 646 SMART SM00052 395 635 5.7E-55 T 13-10-2018 IPR001633 EAL domain CS348_02340 d04164b2eb45b367b4060527fa22e108 646 Gene3D G3DSA:3.30.70.270 208 386 9.6E-23 T 13-10-2018 CS348_02340 d04164b2eb45b367b4060527fa22e108 646 SUPERFAMILY SSF141868 403 638 3.53E-34 T 13-10-2018 IPR035919 EAL domain superfamily CS348_02340 d04164b2eb45b367b4060527fa22e108 646 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 380 2.0E-27 T 13-10-2018 IPR000160 GGDEF domain CS348_02340 d04164b2eb45b367b4060527fa22e108 646 SUPERFAMILY SSF55073 230 387 1.65E-21 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_02340 d04164b2eb45b367b4060527fa22e108 646 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 34 130 1.2E-31 T 13-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 CS348_02340 d04164b2eb45b367b4060527fa22e108 646 Gene3D G3DSA:3.20.20.450 398 640 6.4E-33 T 13-10-2018 IPR035919 EAL domain superfamily CS348_02340 d04164b2eb45b367b4060527fa22e108 646 SMART SM00267 213 385 5.0E-32 T 13-10-2018 IPR000160 GGDEF domain CS348_02340 d04164b2eb45b367b4060527fa22e108 646 Pfam PF00563 EAL domain 404 628 1.5E-34 T 13-10-2018 IPR001633 EAL domain CS348_00225 402511a682d937923bd93e92056aeab7 261 SMART SM00420 8 59 0.0014 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_00225 402511a682d937923bd93e92056aeab7 261 Pfam PF00455 DeoR C terminal sensor domain 85 236 3.2E-30 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_00225 402511a682d937923bd93e92056aeab7 261 Pfam PF08220 DeoR-like helix-turn-helix domain 8 44 2.3E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_00225 402511a682d937923bd93e92056aeab7 261 SUPERFAMILY SSF100950 85 238 2.09E-12 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_00225 402511a682d937923bd93e92056aeab7 261 SMART SM01134 76 237 3.5E-40 T 13-10-2018 CS348_00225 402511a682d937923bd93e92056aeab7 261 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_05425 1fb4d4d667800a94e6b3920a3896663e 197 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 2 183 9.8E-75 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like CS348_05425 1fb4d4d667800a94e6b3920a3896663e 197 Hamap MF_01986 Probable UbiX-like flavin prenyltransferase. 1 189 53.199 T 13-10-2018 IPR032901 Probable UbiX-like flavin prenyltransferase CS348_05425 1fb4d4d667800a94e6b3920a3896663e 197 Gene3D G3DSA:3.40.50.1950 1 197 6.4E-84 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CS348_05425 1fb4d4d667800a94e6b3920a3896663e 197 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 1 185 37.368 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like CS348_05425 1fb4d4d667800a94e6b3920a3896663e 197 SUPERFAMILY SSF52507 1 185 1.13E-63 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CS348_05425 1fb4d4d667800a94e6b3920a3896663e 197 Pfam PF02441 Flavoprotein 1 164 9.3E-24 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CS348_03040 0a843014513f297d91c1c3b8663af3d2 233 Gene3D G3DSA:2.60.120.10 135 233 1.7E-41 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_03040 0a843014513f297d91c1c3b8663af3d2 233 Pfam PF02678 Pirin 5 119 7.1E-24 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CS348_03040 0a843014513f297d91c1c3b8663af3d2 233 PIRSF PIRSF006232 1 230 7.6E-32 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CS348_03040 0a843014513f297d91c1c3b8663af3d2 233 Gene3D G3DSA:2.60.120.10 12 134 1.9E-37 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_03040 0a843014513f297d91c1c3b8663af3d2 233 SUPERFAMILY SSF51182 1 231 2.75E-44 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_22170 82e98447badb41bb3c3d3881c5419331 548 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 56 325 7.0E-33 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 Pfam PF05683 Fumarase C-terminus 332 537 6.0E-93 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 Pfam PF05681 Fumarate hydratase (Fumerase) 51 326 6.1E-87 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 PIRSF PIRSF001394 30 548 9.2E-234 T 13-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 Gene3D G3DSA:3.20.130.10 350 537 5.7E-58 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 4.8E-64 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 SUPERFAMILY SSF117457 361 536 2.62E-61 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CS348_22170 82e98447badb41bb3c3d3881c5419331 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 Pfam PF00072 Response regulator receiver domain 3 112 1.2E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 9.2E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 SUPERFAMILY SSF46894 119 216 2.69E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 SUPERFAMILY SSF52172 1 118 6.83E-35 T 13-10-2018 IPR011006 CheY-like superfamily CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 SMART SM00862 145 216 5.1E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 SMART SM00448 1 112 3.1E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 Gene3D G3DSA:1.10.10.10 123 219 4.1E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03360 ff9836a5bc24d481163dba90cbb7cf68 219 Gene3D G3DSA:3.40.50.2300 1 122 8.5E-37 T 13-10-2018 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Pfam PF13954 PapC N-terminal domain 36 183 2.6E-42 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 SUPERFAMILY SSF141729 63 174 1.57E-27 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Gene3D G3DSA:2.60.40.2610 675 765 8.8E-35 T 13-10-2018 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Pfam PF00577 Outer membrane usher protein 200 760 1.3E-201 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Gene3D G3DSA:2.60.40.3110 273 362 8.4E-38 T 13-10-2018 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Pfam PF13953 PapC C-terminal domain 769 836 8.8E-18 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Gene3D G3DSA:2.60.40.2070 766 851 2.8E-24 T 13-10-2018 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 Gene3D G3DSA:3.10.20.410 53 171 9.3E-35 T 13-10-2018 CS348_14435 31d52e5cc7035bd2ad7859a78584c44f 851 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 315 325 - T 13-10-2018 IPR018030 Fimbrial membrane usher, conserved site CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 SUPERFAMILY SSF49493 114 267 2.09E-22 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 SUPERFAMILY SSF49493 259 344 9.42E-21 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Pfam PF01556 DnaJ C terminal domain 121 333 5.6E-46 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 13-10-2018 IPR018253 DnaJ domain, conserved site CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Gene3D G3DSA:2.60.260.20 117 249 1.2E-39 T 13-10-2018 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Gene3D G3DSA:1.10.287.110 1 114 1.1E-39 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Gene3D G3DSA:2.60.260.20 254 333 1.5E-28 T 13-10-2018 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Gene3D G3DSA:2.10.230.10 147 207 1.2E-39 T 13-10-2018 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 SMART SM00271 4 62 1.6E-31 T 13-10-2018 IPR001623 DnaJ domain CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 349 9.5E-144 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 PRINTS PR00625 DnaJ domain signature 7 25 1.1E-33 T 13-10-2018 IPR001623 DnaJ domain CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 PRINTS PR00625 DnaJ domain signature 62 81 1.1E-33 T 13-10-2018 IPR001623 DnaJ domain CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 PRINTS PR00625 DnaJ domain signature 42 62 1.1E-33 T 13-10-2018 IPR001623 DnaJ domain CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 PRINTS PR00625 DnaJ domain signature 25 40 1.1E-33 T 13-10-2018 IPR001623 DnaJ domain CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 SUPERFAMILY SSF57938 134 211 6.15E-24 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Pfam PF00684 DnaJ central domain 147 207 9.7E-16 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 SUPERFAMILY SSF46565 1 108 3.14E-36 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Pfam PF00226 DnaJ domain 5 67 1.0E-28 T 13-10-2018 IPR001623 DnaJ domain CS348_20300 f08a9e398cada618c74a518cb9f17b09 379 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.958 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CS348_20275 e403d54760b9103f0e32eea018459bef 699 Pfam PF00704 Glycosyl hydrolases family 18 54 465 3.7E-61 T 13-10-2018 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0005975 CS348_20275 e403d54760b9103f0e32eea018459bef 699 Gene3D G3DSA:2.60.40.10 510 603 1.6E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20275 e403d54760b9103f0e32eea018459bef 699 SUPERFAMILY SSF54556 372 435 9.16E-11 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CS348_20275 e403d54760b9103f0e32eea018459bef 699 SMART SM00636 53 465 2.8E-60 T 13-10-2018 IPR011583 Chitinase II GO:0008061 CS348_20275 e403d54760b9103f0e32eea018459bef 699 Gene3D G3DSA:2.10.10.20 644 699 4.8E-6 T 13-10-2018 CS348_20275 e403d54760b9103f0e32eea018459bef 699 Gene3D G3DSA:3.20.20.80 44 492 1.4E-180 T 13-10-2018 CS348_20275 e403d54760b9103f0e32eea018459bef 699 Gene3D G3DSA:3.10.50.10 12 438 1.4E-180 T 13-10-2018 IPR029070 Chitinase insertion domain superfamily CS348_20275 e403d54760b9103f0e32eea018459bef 699 SUPERFAMILY SSF51055 643 697 2.94E-6 T 13-10-2018 IPR036573 Carbohydrate-binding module superfamily 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 CS348_20275 e403d54760b9103f0e32eea018459bef 699 SUPERFAMILY SSF51445 48 466 1.52E-62 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_15735 468384bf7901e40ada97e8e6571d7f7e 267 SUPERFAMILY SSF57938 156 206 8.63E-5 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CS348_15735 468384bf7901e40ada97e8e6571d7f7e 267 Pfam PF03589 Antitermination protein 169 251 5.4E-21 T 13-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 CS348_15735 468384bf7901e40ada97e8e6571d7f7e 267 Pfam PF03589 Antitermination protein 24 109 1.3E-24 T 13-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 CS348_15735 468384bf7901e40ada97e8e6571d7f7e 267 Gene3D G3DSA:3.30.260.20 148 266 1.2E-36 T 13-10-2018 CS348_18300 9144a985c0b26698abfb64244f60e844 287 Gene3D G3DSA:2.40.230.20 23 287 6.1E-121 T 13-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 SUPERFAMILY SSF111364 32 287 9.68E-86 T 13-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 32 287 3.3E-79 T 13-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 28 50 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 90 111 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 116 136 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 151 176 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 55 79 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 233 252 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 263 286 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_18300 9144a985c0b26698abfb64244f60e844 287 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 183 206 1.6E-114 T 13-10-2018 IPR003055 Nucleoside-specific channel-forming protein Tsx GO:0005337|GO:0009279 CS348_00145 95ae6c6f445f558523122ebc938e70e3 142 Pfam PF00011 Hsp20/alpha crystallin family 39 135 2.1E-20 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain CS348_00145 95ae6c6f445f558523122ebc938e70e3 142 Gene3D G3DSA:2.60.40.790 31 135 1.4E-21 T 13-10-2018 IPR008978 HSP20-like chaperone CS348_00145 95ae6c6f445f558523122ebc938e70e3 142 Hamap MF_02001 Small heat shock protein IbpB [ibpB]. 1 142 45.635 T 13-10-2018 IPR022848 Small heat shock protein IbpB CS348_00145 95ae6c6f445f558523122ebc938e70e3 142 SUPERFAMILY SSF49764 30 135 1.46E-19 T 13-10-2018 IPR008978 HSP20-like chaperone CS348_10685 77fc0e8a86c3709122528bb8bac65a10 454 SUPERFAMILY SSF143548 16 158 7.85E-46 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_10685 77fc0e8a86c3709122528bb8bac65a10 454 Gene3D G3DSA:3.30.1330.90 10 159 1.9E-52 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_10685 77fc0e8a86c3709122528bb8bac65a10 454 Pfam PF03313 Serine dehydratase alpha chain 185 448 8.0E-95 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CS348_10685 77fc0e8a86c3709122528bb8bac65a10 454 Pfam PF03315 Serine dehydratase beta chain 3 155 3.2E-56 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_10685 77fc0e8a86c3709122528bb8bac65a10 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 3.6E-229 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_18655 a1f25c7498d8fa038d5ab7952916df77 247 SUPERFAMILY SSF46894 7 98 2.83E-8 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_18655 a1f25c7498d8fa038d5ab7952916df77 247 Gene3D G3DSA:1.10.10.10 2 103 8.0E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 1.1E-38 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 7.7E-17 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 SUPERFAMILY SSF47336 2 77 1.44E-24 T 13-10-2018 IPR036736 ACP-like superfamily CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 4.0E-4 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.327 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CS348_14460 10c00c0561de7dcf4030f0d748031d11 78 Gene3D G3DSA:1.10.1200.10 1 78 3.3E-30 T 13-10-2018 IPR036736 ACP-like superfamily CS348_18335 c39369158b815ee4bef23333bb4a6fe2 375 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 368 3.5E-191 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CS348_18335 c39369158b815ee4bef23333bb4a6fe2 375 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 364 57.687 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CS348_18335 c39369158b815ee4bef23333bb4a6fe2 375 Gene3D G3DSA:3.20.20.105 1 367 7.0E-171 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CS348_18335 c39369158b815ee4bef23333bb4a6fe2 375 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 5.8E-181 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CS348_18335 c39369158b815ee4bef23333bb4a6fe2 375 SUPERFAMILY SSF51713 1 364 2.49E-163 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CS348_18335 c39369158b815ee4bef23333bb4a6fe2 375 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 3.2E-93 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 SUPERFAMILY SSF47979 95 152 2.09E-15 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 38 92 1.6E-8 T 13-10-2018 IPR022687 DTXR-type HTH domain GO:0003677 CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 95 150 6.2E-15 T 13-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 SMART SM00529 56 155 3.3E-40 T 13-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 Gene3D G3DSA:1.10.10.10 24 94 9.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 SUPERFAMILY SSF46785 49 117 5.94E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16150 8d2c2c190989839c212d04acbad2ee46 157 Gene3D G3DSA:1.10.60.10 95 155 3.3E-28 T 13-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 50.834 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 5.4E-164 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 SUPERFAMILY SSF51395 1 334 5.66E-103 T 13-10-2018 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 Gene3D G3DSA:3.20.20.70 1 336 2.5E-146 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 4.6E-92 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CS348_15205 9f31cfb51139a56d6b14efbd576f8b8e 336 PIRSF PIRSF000164 12 336 1.0E-95 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 CS348_07665 9491a8c471ec2cf52ce61e3631cf2059 313 Pfam PF01226 Formate/nitrite transporter 43 279 8.1E-40 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 CS348_07665 9491a8c471ec2cf52ce61e3631cf2059 313 Gene3D G3DSA:1.20.1080.10 38 293 3.3E-32 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 SUPERFAMILY SSF55979 245 366 1.26E-37 T 13-10-2018 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 1.7E-40 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 SUPERFAMILY SSF55979 1 118 6.98E-27 T 13-10-2018 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 SUPERFAMILY SSF55979 125 244 2.37E-30 T 13-10-2018 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 SMART SM00480 17 362 2.8E-173 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 Gene3D G3DSA:3.10.150.10 1 123 3.2E-45 T 13-10-2018 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 PIRSF PIRSF000804 1 366 8.4E-118 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 Gene3D G3DSA:3.10.150.10 248 366 5.5E-42 T 13-10-2018 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 1.3E-113 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 Gene3D G3DSA:3.10.150.10 124 247 3.2E-39 T 13-10-2018 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 8.9E-45 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 CS348_00010 3585742ccf0fa32d1917d219bb784c84 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 1.1E-40 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 CS348_11955 ef7f8747b83f75ccf60bd002bb9897fc 654 Pfam PF01136 Peptidase family U32 79 305 4.6E-71 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_11955 ef7f8747b83f75ccf60bd002bb9897fc 654 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_11955 ef7f8747b83f75ccf60bd002bb9897fc 654 Pfam PF12392 Collagenase 391 505 5.6E-18 T 13-10-2018 IPR020988 Peptidase U32, collagenase CS348_00625 9a2f21a213c2e6c38a9e5851bfe3521c 337 SUPERFAMILY SSF53448 29 297 5.62E-65 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_00625 9a2f21a213c2e6c38a9e5851bfe3521c 337 Pfam PF01501 Glycosyl transferase family 8 29 275 5.7E-67 T 13-10-2018 IPR002495 Glycosyl transferase, family 8 GO:0016757 CS348_00625 9a2f21a213c2e6c38a9e5851bfe3521c 337 Pfam PF08437 Glycosyl transferase family 8 C-terminal 278 334 7.3E-23 T 13-10-2018 IPR013645 Glycosyl transferase, family 8, C-terminal GO:0008918|GO:0009103 CS348_00625 9a2f21a213c2e6c38a9e5851bfe3521c 337 Gene3D G3DSA:3.90.550.10 28 296 2.3E-60 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_06260 024d264e4efce77a9c3528319e78a180 400 Gene3D G3DSA:1.10.443.10 184 391 2.0E-20 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_06260 024d264e4efce77a9c3528319e78a180 400 Pfam PF00589 Phage integrase family 197 338 2.4E-12 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_06260 024d264e4efce77a9c3528319e78a180 400 SUPERFAMILY SSF56349 195 375 1.59E-17 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 Gene3D G3DSA:1.10.3210.10 311 456 1.1E-56 T 13-10-2018 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 SUPERFAMILY SSF53067 137 310 1.15E-46 T 13-10-2018 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 306 1.0E-96 T 13-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 PIRSF PIRSF001267 4 506 3.5E-208 T 13-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 Pfam PF02541 Ppx/GppA phosphatase family 26 308 9.9E-102 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 Gene3D G3DSA:3.30.420.40 14 303 5.8E-99 T 13-10-2018 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 Gene3D G3DSA:3.30.420.150 117 295 5.8E-99 T 13-10-2018 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 SUPERFAMILY SSF53067 13 133 6.48E-36 T 13-10-2018 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 Gene3D G3DSA:3.30.70.2260 457 513 1.1E-31 T 13-10-2018 CS348_07060 ef0bc32dba4c63e20867282a734efca7 513 SUPERFAMILY SSF109604 313 506 1.99E-57 T 13-10-2018 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 SUPERFAMILY SSF50692 688 828 1.27E-41 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 44 61 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 828 0.0 T 13-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Gene3D G3DSA:2.40.40.20 704 828 8.0E-49 T 13-10-2018 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Gene3D G3DSA:3.40.50.740 96 623 0.0 T 13-10-2018 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 SUPERFAMILY SSF53706 37 700 1.57E-203 T 13-10-2018 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Gene3D G3DSA:3.30.200.210 39 666 0.0 T 13-10-2018 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Pfam PF00384 Molybdopterin oxidoreductase 96 567 1.7E-92 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Pfam PF01568 Molydopterin dinucleotide binding domain 714 822 4.4E-25 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 39 92 2.6E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 SMART SM00926 39 93 4.0E-14 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 31 1.3E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 828 32.395 T 13-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 CS348_08365 abb3f07815d5172c1fa0f3968489b243 828 Gene3D G3DSA:3.40.228.10 175 703 0.0 T 13-10-2018 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 2.1E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 SUPERFAMILY SSF46689 2 64 3.49E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 Gene3D G3DSA:1.10.357.10 1 214 1.0E-51 T 13-10-2018 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 202 5.3E-49 T 13-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 4.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 4.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_02265 0088833e61c22696db7dec3d98e4e74f 220 SUPERFAMILY SSF48498 84 203 4.08E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_13345 ad7479eadc686c3dd7fb48fde6d39679 348 Gene3D G3DSA:3.20.20.70 1 348 1.2E-154 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_13345 ad7479eadc686c3dd7fb48fde6d39679 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 5.7E-173 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CS348_13345 ad7479eadc686c3dd7fb48fde6d39679 348 Pfam PF00793 DAHP synthetase I family 43 337 6.9E-106 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_13345 ad7479eadc686c3dd7fb48fde6d39679 348 SUPERFAMILY SSF51569 7 347 2.93E-130 T 13-10-2018 CS348_13345 ad7479eadc686c3dd7fb48fde6d39679 348 PIRSF PIRSF001361 1 348 1.1E-156 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 PRINTS PR00332 Histidine triad family signature 6 22 6.0E-20 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 PRINTS PR00332 Histidine triad family signature 95 105 6.0E-20 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 PRINTS PR00332 Histidine triad family signature 27 45 6.0E-20 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 SUPERFAMILY SSF54197 3 113 1.31E-35 T 13-10-2018 IPR036265 HIT-like superfamily CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 13-10-2018 IPR019808 Histidine triad, conserved site CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 Pfam PF01230 HIT domain 12 109 6.8E-30 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CS348_14385 23773949c3cbb464ddfa47a417663ee5 119 Gene3D G3DSA:3.30.428.10 1 119 2.4E-37 T 13-10-2018 IPR036265 HIT-like superfamily CS348_02625 32dab9c785253a676e7afcc1df52859a 163 SUPERFAMILY SSF55804 9 155 4.32E-41 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_02625 32dab9c785253a676e7afcc1df52859a 163 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 9 155 4.5E-61 T 13-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 CS348_02625 32dab9c785253a676e7afcc1df52859a 163 Gene3D G3DSA:3.40.930.10 1 163 2.1E-64 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_02625 32dab9c785253a676e7afcc1df52859a 163 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 58 74 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_02625 32dab9c785253a676e7afcc1df52859a 163 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 13 155 5.3E-36 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 210 2.0E-87 T 13-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 143 163 9.3E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 9.3E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 9.3E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 188 213 9.3E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 164 185 9.3E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 9.3E-66 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 191 203 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 143 158 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_12980 388c1b5d3843cd1473aeee3191e70ebe 215 Pfam PF00813 FliP family 13 210 2.2E-63 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 Gene3D G3DSA:3.30.70.1250 115 238 1.3E-152 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 55.328 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 PIRSF PIRSF001491 1 407 4.4E-163 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 Pfam PF01676 Metalloenzyme superfamily 2 398 2.3E-44 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 404 4.4E-201 T 13-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 Gene3D G3DSA:3.40.720.10 3 406 1.3E-152 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 SUPERFAMILY SSF53649 1 407 1.96E-68 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_20790 6b83fde32baaddd3a5d8c08da0007565 407 SUPERFAMILY SSF143856 117 235 2.75E-50 T 13-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 CS348_12020 1f9b1122da29d0d9171137911dd0a3dd 77 Pfam PF10735 Protein of unknown function (DUF2526) 1 77 8.3E-43 T 13-10-2018 IPR019671 Protein of unknown function DUF2526 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 SUPERFAMILY SSF50814 15 176 2.81E-50 T 13-10-2018 IPR012674 Calycin CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 ProSitePatterns PS00213 Lipocalin signature. 33 46 - T 13-10-2018 IPR022272 Lipocalin family conserved site CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PIRSF PIRSF036893 1 177 9.8E-53 T 13-10-2018 IPR022271 Lipocalin, ApoD type CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 163 173 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 51 67 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 121 129 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 136 147 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 104 118 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 34 48 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 PRINTS PR01171 Bacterial lipocalin signature 70 79 2.0E-50 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 Gene3D G3DSA:2.40.128.20 8 177 1.7E-59 T 13-10-2018 IPR012674 Calycin CS348_21920 87721f44de345b2a4d828f8f83c29bbc 177 Pfam PF08212 Lipocalin-like domain 35 174 1.5E-47 T 13-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain CS348_17165 bd9a98009e238fff4084c9238f01364d 412 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 151 6.2E-30 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_17165 bd9a98009e238fff4084c9238f01364d 412 Gene3D G3DSA:3.40.50.720 178 339 1.4E-130 T 13-10-2018 CS348_17165 bd9a98009e238fff4084c9238f01364d 412 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 23 9.4E-13 T 13-10-2018 IPR027399 Alcohol dehydrogenase GroES-associated CS348_17165 bd9a98009e238fff4084c9238f01364d 412 SUPERFAMILY SSF50129 1 200 4.26E-60 T 13-10-2018 IPR011032 GroES-like superfamily CS348_17165 bd9a98009e238fff4084c9238f01364d 412 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_17165 bd9a98009e238fff4084c9238f01364d 412 Pfam PF00107 Zinc-binding dehydrogenase 197 268 7.8E-10 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_17165 bd9a98009e238fff4084c9238f01364d 412 SUPERFAMILY SSF51735 164 349 1.04E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_17165 bd9a98009e238fff4084c9238f01364d 412 Gene3D G3DSA:3.90.180.10 8 375 1.4E-130 T 13-10-2018 CS348_12030 f4c971119eab12ef69079ec6eddf0989 171 Gene3D G3DSA:3.40.630.30 1 171 7.8E-57 T 13-10-2018 CS348_12030 f4c971119eab12ef69079ec6eddf0989 171 SUPERFAMILY SSF55729 2 165 6.52E-34 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_12030 f4c971119eab12ef69079ec6eddf0989 171 Pfam PF13420 Acetyltransferase (GNAT) domain 3 154 1.1E-17 T 13-10-2018 CS348_09535 8cba5e878f072c4c96a6506aee1140c8 263 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 5 235 2.5E-47 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 CS348_09535 8cba5e878f072c4c96a6506aee1140c8 263 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 6 242 7.5E-68 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 CS348_11655 25cdfff8780f506b96bfe8da111e5ec1 187 Pfam PF01713 Smr domain 90 169 4.5E-18 T 13-10-2018 IPR002625 Smr domain CS348_11655 25cdfff8780f506b96bfe8da111e5ec1 187 Gene3D G3DSA:3.30.1370.110 39 175 1.7E-48 T 13-10-2018 CS348_11655 25cdfff8780f506b96bfe8da111e5ec1 187 SMART SM00463 85 169 5.1E-17 T 13-10-2018 IPR002625 Smr domain CS348_11655 25cdfff8780f506b96bfe8da111e5ec1 187 SUPERFAMILY SSF160443 87 169 3.27E-11 T 13-10-2018 IPR036063 Smr domain superfamily CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 13-10-2018 IPR020583 Inositol monophosphatase, metal-binding site CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 13-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 6.1E-62 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 6.1E-62 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 6.1E-62 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 6.1E-62 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 6.1E-62 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 6.1E-62 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 Gene3D G3DSA:3.40.190.80 141 267 8.2E-43 T 13-10-2018 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 6.0E-37 T 13-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 6.0E-37 T 13-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 6.0E-37 T 13-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 6.0E-37 T 13-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 Gene3D G3DSA:3.30.540.10 1 140 5.6E-53 T 13-10-2018 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 SUPERFAMILY SSF56655 1 261 1.09E-85 T 13-10-2018 CS348_06820 297dc5f0b5d899e88f7faff50f160abf 267 Pfam PF00459 Inositol monophosphatase family 2 259 8.7E-75 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CS348_24930 fe0ba8f66758d3086c658e450127154f 198 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 7 169 3.0E-32 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal CS348_24930 fe0ba8f66758d3086c658e450127154f 198 PIRSF PIRSF000013 1 182 2.1E-15 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 CS348_24930 fe0ba8f66758d3086c658e450127154f 198 Gene3D G3DSA:1.10.3820.10 1 177 2.1E-32 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily CS348_24930 fe0ba8f66758d3086c658e450127154f 198 SUPERFAMILY SSF48695 26 168 4.43E-21 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_06700 16522e8ec427ac8e533d22ee1864db3d 453 Pfam PF02378 Phosphotransferase system, EIIC 117 391 5.9E-33 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_06700 16522e8ec427ac8e533d22ee1864db3d 453 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 20 37 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_06700 16522e8ec427ac8e533d22ee1864db3d 453 Pfam PF00367 phosphotransferase system, EIIB 10 42 9.2E-11 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_06700 16522e8ec427ac8e533d22ee1864db3d 453 SUPERFAMILY SSF55604 7 78 4.18E-16 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_06700 16522e8ec427ac8e533d22ee1864db3d 453 Gene3D G3DSA:3.30.1360.60 3 83 3.1E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 Gene3D G3DSA:1.10.540.10 2 117 2.7E-28 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 SUPERFAMILY SSF47203 226 381 2.09E-50 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 335 354 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 107 3.3E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 228 376 9.7E-46 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 216 3.4E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 Gene3D G3DSA:1.20.140.10 235 381 3.9E-45 T 13-10-2018 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 SUPERFAMILY SSF56645 1 227 5.76E-52 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 PIRSF PIRSF016578 9 96 0.0021 T 13-10-2018 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 PIRSF PIRSF016578 235 381 1.5E-9 T 13-10-2018 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 PIRSF PIRSF016578 134 190 14.0 T 13-10-2018 CS348_13300 f6c4e844e342c7b75bab7122c26a8f69 383 Gene3D G3DSA:2.40.110.10 120 234 4.5E-31 T 13-10-2018 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_12775 66574b0f3d1baab1e4435211ee392056 192 Pfam PF14697 4Fe-4S dicluster domain 110 163 8.5E-17 T 13-10-2018 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 Pfam PF04060 Putative Fe-S cluster 44 76 3.0E-12 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 169 25.993 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 PIRSF PIRSF005784 3 191 1.6E-84 T 13-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 SUPERFAMILY SSF54862 38 175 7.54E-29 T 13-10-2018 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 Gene3D G3DSA:3.30.70.20 139 179 3.9E-6 T 13-10-2018 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 Gene3D G3DSA:3.20.20.20 37 102 1.1E-10 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 191 3.2E-86 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 CS348_12775 66574b0f3d1baab1e4435211ee392056 192 Gene3D G3DSA:3.30.70.20 103 136 2.8E-7 T 13-10-2018 CS348_19790 1e72aed3602b662f4ac02d3546059527 40 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 3 37 3.7E-10 T 13-10-2018 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 1.0E-80 T 13-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 SUPERFAMILY SSF52821 407 481 2.43E-8 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 Gene3D G3DSA:3.40.50.620 175 395 5.4E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 SMART SM00981 75 165 2.8E-27 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 Gene3D G3DSA:3.40.250.10 396 482 4.1E-7 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 Pfam PF02926 THUMP domain 28 161 1.9E-29 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 Gene3D G3DSA:3.30.2130.30 1 174 2.4E-38 T 13-10-2018 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 1.6E-40 T 13-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 SUPERFAMILY SSF52402 174 372 8.16E-42 T 13-10-2018 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 377 5.3E-146 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 233.467 T 13-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 CS348_18240 e86cc3fac8d63a8bb46752a0c9cd8a73 482 SUPERFAMILY SSF143437 1 173 1.67E-51 T 13-10-2018 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 Gene3D G3DSA:3.40.50.2000 249 458 1.2E-194 T 13-10-2018 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 475 2.4E-175 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 46.992 T 13-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 SUPERFAMILY SSF53756 5 476 1.26E-117 T 13-10-2018 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 Pfam PF00534 Glycosyl transferases group 1 287 438 8.7E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 Pfam PF08323 Starch synthase catalytic domain 2 234 1.0E-72 T 13-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 CS348_01565 24b9b27abf4c859a7e45d007da406a48 477 Gene3D G3DSA:3.40.50.2000 3 473 1.2E-194 T 13-10-2018 CS348_17010 7b2d67c308b984b9eb46d69973071316 202 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 3 181 8.9E-60 T 13-10-2018 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CS348_17010 7b2d67c308b984b9eb46d69973071316 202 SMART SM00855 2 156 2.2E-20 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_17010 7b2d67c308b984b9eb46d69973071316 202 SUPERFAMILY SSF53254 1 198 3.73E-55 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_17010 7b2d67c308b984b9eb46d69973071316 202 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 194 7.4E-54 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_17010 7b2d67c308b984b9eb46d69973071316 202 PIRSF PIRSF000709 1 179 8.9E-13 T 13-10-2018 CS348_17010 7b2d67c308b984b9eb46d69973071316 202 Gene3D G3DSA:3.40.50.1240 1 201 4.1E-55 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_17010 7b2d67c308b984b9eb46d69973071316 202 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 2.7E-155 T 13-10-2018 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 PIRSF PIRSF002808 6 442 6.5E-151 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 Gene3D G3DSA:1.20.1250.20 237 438 6.7E-44 T 13-10-2018 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 Pfam PF07690 Major Facilitator Superfamily 35 396 2.6E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 Gene3D G3DSA:1.20.1250.20 19 223 2.8E-47 T 13-10-2018 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 ProSitePatterns PS00942 glpT family of transporters signature. 151 167 - T 13-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 CS348_00255 edbf4f6ea7c5f177db432c3bd8b6df6f 442 SUPERFAMILY SSF103473 17 437 7.06E-77 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18810 10513756dbe5c121f0464c46d3beb64f 239 Pfam PF13505 Outer membrane protein beta-barrel domain 9 239 1.2E-21 T 13-10-2018 IPR027385 Outer membrane protein beta-barrel CS348_18810 10513756dbe5c121f0464c46d3beb64f 239 SUPERFAMILY SSF56925 23 239 1.2E-29 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_18810 10513756dbe5c121f0464c46d3beb64f 239 Gene3D G3DSA:2.40.160.20 22 239 5.3E-36 T 13-10-2018 CS348_03455 0ed6fee78e447ce252f35dde651afa79 484 Pfam PF00939 Sodium:sulfate symporter transmembrane region 10 483 1.3E-134 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CS348_03455 0ed6fee78e447ce252f35dde651afa79 484 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 30 478 1.3E-116 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CS348_03455 0ed6fee78e447ce252f35dde651afa79 484 PIRSF PIRSF002457 1 484 1.7E-155 T 13-10-2018 IPR030676 Citrate carrier CitT-related CS348_01445 8affac797db50334ece38ac9699b6d16 122 Gene3D G3DSA:1.20.120.1870 3 122 3.5E-38 T 13-10-2018 CS348_01445 8affac797db50334ece38ac9699b6d16 122 SUPERFAMILY SSF140931 5 93 2.35E-10 T 13-10-2018 IPR036597 Fido-like domain superfamily CS348_01445 8affac797db50334ece38ac9699b6d16 122 Pfam PF02661 Fic/DOC family 24 86 2.6E-8 T 13-10-2018 IPR003812 Fido domain CS348_01445 8affac797db50334ece38ac9699b6d16 122 TIGRFAM TIGR01550 DOC_P1: death-on-curing family protein 6 117 8.7E-22 T 13-10-2018 IPR006440 Death on curing protein GO:0016301 CS348_01445 8affac797db50334ece38ac9699b6d16 122 PIRSF PIRSF018297 2 122 1.1E-31 T 13-10-2018 IPR006440 Death on curing protein GO:0016301 CS348_03975 d5711d4535fa1805ad9d271fa8548790 163 SUPERFAMILY SSF52980 41 116 9.65E-12 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_03975 d5711d4535fa1805ad9d271fa8548790 163 Pfam PF04471 Restriction endonuclease 36 146 6.6E-17 T 13-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 CS348_07120 f7b545d6c4ae80f49c95984b7cedf0d3 379 Pfam PF02595 Glycerate kinase family 3 373 2.3E-150 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_07120 f7b545d6c4ae80f49c95984b7cedf0d3 379 Gene3D G3DSA:3.40.50.10350 1 362 6.3E-144 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold CS348_07120 f7b545d6c4ae80f49c95984b7cedf0d3 379 Gene3D G3DSA:3.90.1510.10 42 276 6.3E-144 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 CS348_07120 f7b545d6c4ae80f49c95984b7cedf0d3 379 SUPERFAMILY SSF110738 1 375 6.02E-143 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 CS348_07120 f7b545d6c4ae80f49c95984b7cedf0d3 379 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 1.4E-161 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_07120 f7b545d6c4ae80f49c95984b7cedf0d3 379 PIRSF PIRSF006078 1 378 6.5E-141 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 PRINTS PR01032 Gene IV protein signature 230 253 3.8E-9 T 13-10-2018 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 PRINTS PR01032 Gene IV protein signature 271 294 3.8E-9 T 13-10-2018 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 PRINTS PR01032 Gene IV protein signature 337 365 3.8E-9 T 13-10-2018 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 22 409 2.0E-129 T 13-10-2018 IPR013355 Type IV pilus secretin PilQ CS348_01735 0547010cf7c67341b4e4cd155863298e 412 Pfam PF00263 Bacterial type II and III secretion system protein 250 409 4.2E-46 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 355 388 - T 13-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 Pfam PF03958 Bacterial type II/III secretion system short domain 120 180 2.3E-10 T 13-10-2018 IPR005644 NolW-like CS348_01735 0547010cf7c67341b4e4cd155863298e 412 Gene3D G3DSA:3.55.50.30 10 116 6.3E-25 T 13-10-2018 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 Gene3D G3DSA:3.30.1370.120 119 177 7.7E-10 T 13-10-2018 IPR038591 NolW-like superfamily CS348_01735 0547010cf7c67341b4e4cd155863298e 412 SMART SM00965 46 94 0.0021 T 13-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 CS348_01735 0547010cf7c67341b4e4cd155863298e 412 PRINTS PR00811 Bacterial general secretion pathway protein D signature 374 392 2.3E-12 T 13-10-2018 IPR001775 GspD/PilQ family CS348_01735 0547010cf7c67341b4e4cd155863298e 412 PRINTS PR00811 Bacterial general secretion pathway protein D signature 397 411 2.3E-12 T 13-10-2018 IPR001775 GspD/PilQ family CS348_01735 0547010cf7c67341b4e4cd155863298e 412 PRINTS PR00811 Bacterial general secretion pathway protein D signature 246 270 2.3E-12 T 13-10-2018 IPR001775 GspD/PilQ family CS348_08555 26067f0195702e5fc56480c79abee2a7 239 Pfam PF01569 PAP2 superfamily 137 213 8.4E-9 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_08555 26067f0195702e5fc56480c79abee2a7 239 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 3 235 42.387 T 13-10-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 CS348_08555 26067f0195702e5fc56480c79abee2a7 239 Gene3D G3DSA:1.20.144.10 119 227 1.9E-8 T 13-10-2018 CS348_08555 26067f0195702e5fc56480c79abee2a7 239 SMART SM00014 96 212 1.6E-19 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_08555 26067f0195702e5fc56480c79abee2a7 239 SUPERFAMILY SSF48317 2 223 3.01E-38 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 SMART SM00345 13 71 5.8E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 5.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 5.8E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 SUPERFAMILY SSF46785 4 91 7.36E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 67 5.7E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 SUPERFAMILY SSF48008 118 201 7.85E-5 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_02435 986f7667e32e7cca11cfbeb3138d81a5 209 Gene3D G3DSA:1.10.10.10 1 72 6.9E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_15270 f4b69ae60809f6ced5f34e8dd675ca10 267 Pfam PF13489 Methyltransferase domain 34 201 9.5E-18 T 13-10-2018 CS348_15270 f4b69ae60809f6ced5f34e8dd675ca10 267 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 255 43.136 T 13-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 CS348_15270 f4b69ae60809f6ced5f34e8dd675ca10 267 Gene3D G3DSA:3.40.50.150 8 256 1.8E-80 T 13-10-2018 CS348_15270 f4b69ae60809f6ced5f34e8dd675ca10 267 SUPERFAMILY SSF53335 6 245 1.49E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_24425 8add99f3760876fd1132c4aee5af36cc 147 Pfam PF00258 Flavodoxin 7 136 5.9E-23 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CS348_24425 8add99f3760876fd1132c4aee5af36cc 147 SUPERFAMILY SSF52218 1 146 2.3E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_24425 8add99f3760876fd1132c4aee5af36cc 147 Gene3D G3DSA:3.40.50.360 1 147 1.9E-50 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 2.8E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 SUPERFAMILY SSF53850 96 301 5.27E-33 T 13-10-2018 CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 Gene3D G3DSA:1.10.10.10 7 95 2.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 Gene3D G3DSA:3.40.190.10 172 275 5.8E-39 T 13-10-2018 CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 SUPERFAMILY SSF46785 9 93 2.95E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 Gene3D G3DSA:3.40.190.10 108 291 5.8E-39 T 13-10-2018 CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 Pfam PF03466 LysR substrate binding domain 95 301 3.1E-34 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 3.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 3.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08740 e7ae5a195801727bda1d96679b4b3f8c 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 3.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08685 5548bc8e21fc3323a10fbbd76c73429e 332 Gene3D G3DSA:3.40.50.2300 134 279 3.4E-120 T 13-10-2018 CS348_08685 5548bc8e21fc3323a10fbbd76c73429e 332 Pfam PF13407 Periplasmic binding protein domain 28 299 3.6E-63 T 13-10-2018 IPR025997 Periplasmic binding protein CS348_08685 5548bc8e21fc3323a10fbbd76c73429e 332 SUPERFAMILY SSF53822 25 330 1.37E-84 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_08685 5548bc8e21fc3323a10fbbd76c73429e 332 Gene3D G3DSA:3.40.50.2300 28 299 3.4E-120 T 13-10-2018 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Gene3D G3DSA:2.60.34.10 389 519 3.7E-51 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Gene3D G3DSA:3.30.420.40 23 374 6.5E-113 T 13-10-2018 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 SUPERFAMILY SSF53067 200 377 6.62E-52 T 13-10-2018 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.457 T 13-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Pfam PF00012 Hsp70 protein 22 600 3.4E-202 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Gene3D G3DSA:3.30.420.40 194 361 6.5E-113 T 13-10-2018 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 7.9E-271 T 13-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Gene3D G3DSA:3.90.640.10 238 311 6.5E-113 T 13-10-2018 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 SUPERFAMILY SSF100920 384 535 1.11E-50 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 Gene3D G3DSA:1.20.1270.10 520 615 5.3E-30 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 329 345 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 385 404 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 360 380 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 466 482 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 48 60 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 2.9E-54 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 SUPERFAMILY SSF53067 20 196 8.42E-49 T 13-10-2018 CS348_06855 94ce001a06d6e3ad8ff08c0f12424fd3 616 SUPERFAMILY SSF100934 504 615 5.89E-37 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CS348_25815 e6fc90a00525f6057e22b3f1e0f91c8e 82 Pfam PF07362 Post-segregation antitoxin CcdA 9 71 2.1E-21 T 13-10-2018 IPR009956 Post-segregation antitoxin CcdA CS348_08385 fb8633cb803629c510361040a3954f92 149 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 39 142 2.1E-43 T 13-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB CS348_08385 fb8633cb803629c510361040a3954f92 149 PIRSF PIRSF006105 1 149 1.7E-53 T 13-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB CS348_08385 fb8633cb803629c510361040a3954f92 149 Gene3D G3DSA:1.10.1130.10 62 129 5.3E-30 T 13-10-2018 CS348_08385 fb8633cb803629c510361040a3954f92 149 SUPERFAMILY SSF48695 48 144 1.06E-39 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_09390 db9731772ce58973b1e640bad1d4fde5 116 Gene3D G3DSA:3.30.70.1710 1 116 4.9E-55 T 13-10-2018 CS348_09390 db9731772ce58973b1e640bad1d4fde5 116 SMART SM00877 44 116 3.6E-19 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09390 db9731772ce58973b1e640bad1d4fde5 116 Pfam PF00936 BMC domain 45 109 8.8E-13 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09390 db9731772ce58973b1e640bad1d4fde5 116 SUPERFAMILY SSF143414 44 112 7.72E-15 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09390 db9731772ce58973b1e640bad1d4fde5 116 PIRSF PIRSF012296 1 116 1.5E-59 T 13-10-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 CS348_15355 75dda72232c1e12ffaa0d9c1cd4a9d65 285 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site CS348_15355 75dda72232c1e12ffaa0d9c1cd4a9d65 285 Pfam PF01226 Formate/nitrite transporter 15 276 1.4E-76 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 CS348_15355 75dda72232c1e12ffaa0d9c1cd4a9d65 285 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 14 279 5.0E-128 T 13-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 CS348_15355 75dda72232c1e12ffaa0d9c1cd4a9d65 285 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 1.9E-97 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 CS348_15355 75dda72232c1e12ffaa0d9c1cd4a9d65 285 Gene3D G3DSA:1.20.1080.10 1 268 1.4E-108 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_15355 75dda72232c1e12ffaa0d9c1cd4a9d65 285 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 SMART SM00382 133 282 9.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 SUPERFAMILY SSF52540 111 346 6.45E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 SUPERFAMILY SSF53062 574 664 6.98E-9 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 Pfam PF00158 Sigma-54 interaction domain 111 274 7.6E-47 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 Pfam PF00874 PRD domain 849 930 5.1E-8 T 13-10-2018 IPR011608 PRD domain GO:0006355 CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 SUPERFAMILY SSF63520 465 557 7.32E-5 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 Gene3D G3DSA:3.40.50.510 571 693 3.8E-23 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 SUPERFAMILY SSF63520 829 930 4.45E-9 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_00335 2c5ad2cb76f2617f9e05b2a8a6f2199b 932 Gene3D G3DSA:3.40.50.300 108 284 1.5E-38 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 316 331 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Gene3D G3DSA:1.10.10.60 496 532 1.6E-10 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 11 533 1.1E-248 T 13-10-2018 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005737|GO:0019629 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Gene3D G3DSA:1.10.8.60 402 487 2.0E-15 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 SUPERFAMILY SSF52540 220 464 7.94E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Pfam PF06506 Propionate catabolism activator 39 201 2.2E-50 T 13-10-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 SMART SM00382 241 394 1.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Gene3D G3DSA:3.40.50.2300 23 195 4.4E-70 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 SUPERFAMILY SSF46689 447 532 8.36E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Pfam PF00158 Sigma-54 interaction domain 222 396 1.6E-63 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Gene3D G3DSA:3.40.50.10660 92 179 4.4E-70 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Gene3D G3DSA:3.40.50.300 211 401 3.4E-61 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 SUPERFAMILY SSF159800 15 197 5.23E-52 T 13-10-2018 CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 447 456 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_18540 894fb8eeb245c15af681a6bcfb72db82 541 Pfam PF02954 Bacterial regulatory protein, Fis family 497 533 4.7E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 SMART SM00421 149 206 4.7E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 204 7.9E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 Gene3D G3DSA:1.10.10.10 119 209 7.6E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20895 b7781981fb1049e3bbb6a50b70741aa6 224 SUPERFAMILY SSF46894 146 204 7.48E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_23055 1f21e48309be797ff6eaf74958d49b3b 296 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.2E-106 T 13-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 CS348_23055 1f21e48309be797ff6eaf74958d49b3b 296 Pfam PF02219 Methylenetetrahydrofolate reductase 16 291 1.3E-107 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CS348_23055 1f21e48309be797ff6eaf74958d49b3b 296 Gene3D G3DSA:3.20.20.220 1 296 3.3E-121 T 13-10-2018 CS348_23055 1f21e48309be797ff6eaf74958d49b3b 296 SUPERFAMILY SSF51730 22 294 6.28E-97 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like CS348_08225 857df1a5b409c634df208c519e60518e 396 Pfam PF02754 Cysteine-rich domain 293 376 1.3E-14 T 13-10-2018 IPR004017 Cysteine-rich domain CS348_08225 857df1a5b409c634df208c519e60518e 396 Pfam PF02754 Cysteine-rich domain 163 249 2.1E-15 T 13-10-2018 IPR004017 Cysteine-rich domain CS348_08225 857df1a5b409c634df208c519e60518e 396 Pfam PF13183 4Fe-4S dicluster domain 6 70 5.1E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08225 857df1a5b409c634df208c519e60518e 396 Gene3D G3DSA:1.10.1060.10 2 91 1.5E-8 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_08225 857df1a5b409c634df208c519e60518e 396 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 56 67 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08225 857df1a5b409c634df208c519e60518e 396 SUPERFAMILY SSF46548 6 82 1.08E-16 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_08225 857df1a5b409c634df208c519e60518e 396 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 3 395 2.0E-227 T 13-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 CS348_14870 e1bb1cad5b866a05d3cf3e1f51c752e6 131 Pfam PF07007 Lysozyme inhibitor LprI 23 110 6.2E-20 T 13-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal CS348_14870 e1bb1cad5b866a05d3cf3e1f51c752e6 131 ProDom PD498860 RC0070 95 127 0.003 T 13-10-2018 CS348_14870 e1bb1cad5b866a05d3cf3e1f51c752e6 131 Gene3D G3DSA:1.20.1270.180 14 126 1.0E-24 T 13-10-2018 CS348_12940 061f447c92a460b9168ba96de5dab35c 382 PIRSF PIRSF003085 2 381 4.7E-129 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 CS348_12940 061f447c92a460b9168ba96de5dab35c 382 Gene3D G3DSA:3.40.50.150 117 376 6.6E-101 T 13-10-2018 CS348_12940 061f447c92a460b9168ba96de5dab35c 382 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 7.4E-104 T 13-10-2018 CS348_12940 061f447c92a460b9168ba96de5dab35c 382 SUPERFAMILY SSF53335 117 373 3.56E-80 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_01220 e706875af45829877be93efb04689db5 549 ProSitePatterns PS00928 Trehalase signature 2. 459 468 - T 13-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 314 331 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 530 543 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 346 363 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 207 225 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 281 298 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 452 468 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 PRINTS PR00744 Glycosyl hydrolase family 37 signature 389 405 2.2E-45 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 ProSitePatterns PS00927 Trehalase signature 1. 165 178 - T 13-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 Gene3D G3DSA:1.50.10.10 54 549 1.0E-165 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CS348_01220 e706875af45829877be93efb04689db5 549 Pfam PF01204 Trehalase 70 546 1.0E-163 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_01220 e706875af45829877be93efb04689db5 549 SUPERFAMILY SSF48208 55 547 1.11E-149 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CS348_01220 e706875af45829877be93efb04689db5 549 Hamap MF_01059 Cytoplasmic trehalase [treF]. 34 549 81.851 T 13-10-2018 IPR023715 Trehalase, cytoplasmic GO:0004555|GO:0005737|GO:0005993|GO:0071474 KEGG: 00500+3.2.1.28 CS348_25550 37c3467e89f234e35f4bc43ee6d26d19 260 Gene3D G3DSA:1.10.443.10 36 247 8.1E-31 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_25550 37c3467e89f234e35f4bc43ee6d26d19 260 SUPERFAMILY SSF56349 42 233 2.47E-27 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_25550 37c3467e89f234e35f4bc43ee6d26d19 260 Pfam PF00589 Phage integrase family 42 233 1.6E-44 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_25550 37c3467e89f234e35f4bc43ee6d26d19 260 PIRSF PIRSF004576 2 258 5.5E-114 T 13-10-2018 IPR016423 Resolvase, Rsv CS348_14220 5399186087d3e24d0d5e25aab242e041 221 Gene3D G3DSA:3.30.70.580 29 104 1.5E-30 T 13-10-2018 CS348_14220 5399186087d3e24d0d5e25aab242e041 221 Pfam PF00849 RNA pseudouridylate synthase 41 186 3.5E-13 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_14220 5399186087d3e24d0d5e25aab242e041 221 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 76 90 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_14220 5399186087d3e24d0d5e25aab242e041 221 SUPERFAMILY SSF55120 37 216 7.2E-45 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_14220 5399186087d3e24d0d5e25aab242e041 221 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 45 216 2.1E-60 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_14220 5399186087d3e24d0d5e25aab242e041 221 Gene3D G3DSA:3.30.70.1560 105 205 2.2E-42 T 13-10-2018 CS348_07240 62ffea30a7e4b1706a09d863cb0516ef 229 Gene3D G3DSA:2.60.120.10 97 229 2.2E-52 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_07240 62ffea30a7e4b1706a09d863cb0516ef 229 SUPERFAMILY SSF51182 103 226 1.63E-29 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_07240 62ffea30a7e4b1706a09d863cb0516ef 229 Pfam PF06249 Ethanolamine utilisation protein EutQ 81 228 1.6E-66 T 13-10-2018 IPR010424 Ethanolamine utilisation EutQ CS348_12005 5eb597907b717f8f223a7281a45830c6 714 PIRSF PIRSF034586 409 714 1.7E-97 T 13-10-2018 IPR017030 Virulence effector, SrfC CS348_12005 5eb597907b717f8f223a7281a45830c6 714 PIRSF PIRSF034586 1 414 4.3E-159 T 13-10-2018 IPR017030 Virulence effector, SrfC CS348_12005 5eb597907b717f8f223a7281a45830c6 714 Pfam PF10139 Putative bacterial virulence factor 543 709 2.0E-25 T 13-10-2018 IPR017030 Virulence effector, SrfC CS348_12005 5eb597907b717f8f223a7281a45830c6 714 Pfam PF10139 Putative bacterial virulence factor 12 417 3.5E-59 T 13-10-2018 IPR017030 Virulence effector, SrfC CS348_11140 7adef141793d7b628f030a7114d996e7 278 Gene3D G3DSA:1.10.287.70 26 245 7.4E-48 T 13-10-2018 CS348_11140 7adef141793d7b628f030a7114d996e7 278 SUPERFAMILY SSF81324 25 242 2.35E-47 T 13-10-2018 CS348_11140 7adef141793d7b628f030a7114d996e7 278 Pfam PF00520 Ion transport protein 27 245 2.6E-27 T 13-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 18 46 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 128 154 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 157 180 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 64 87 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 90 110 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 215 241 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_11140 7adef141793d7b628f030a7114d996e7 278 PRINTS PR00169 Potassium channel signature 186 208 7.9E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CS348_01170 d335a54e9c2e92fbe6cb8469e3b4a683 495 Pfam PF05193 Peptidase M16 inactive domain 201 377 6.9E-17 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CS348_01170 d335a54e9c2e92fbe6cb8469e3b4a683 495 Pfam PF00675 Insulinase (Peptidase family M16) 50 158 1.4E-5 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CS348_01170 d335a54e9c2e92fbe6cb8469e3b4a683 495 Gene3D G3DSA:3.30.830.10 9 255 5.7E-38 T 13-10-2018 CS348_01170 d335a54e9c2e92fbe6cb8469e3b4a683 495 SUPERFAMILY SSF63411 29 239 1.03E-22 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_01170 d335a54e9c2e92fbe6cb8469e3b4a683 495 Gene3D G3DSA:3.30.830.10 256 471 7.0E-103 T 13-10-2018 CS348_01170 d335a54e9c2e92fbe6cb8469e3b4a683 495 SUPERFAMILY SSF63411 274 452 2.15E-5 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 Gene3D G3DSA:1.10.441.10 150 300 1.8E-149 T 13-10-2018 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 Gene3D G3DSA:2.60.120.10 301 382 1.8E-149 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 3 384 3.6E-130 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 Gene3D G3DSA:2.60.120.10 6 275 1.8E-149 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 13-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 1.2E-74 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 13-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 SUPERFAMILY SSF51182 1 374 4.11E-102 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 PIRSF PIRSF001480 1 391 4.1E-111 T 13-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_12720 51bbe075cb0f3673236df8fe8a74650f 391 Pfam PF01238 Phosphomannose isomerase type I 1 356 1.7E-113 T 13-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 Gene3D G3DSA:3.10.580.10 202 325 3.4E-46 T 13-10-2018 CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 Pfam PF00571 CBS domain 274 325 5.6E-5 T 13-10-2018 IPR000644 CBS domain CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 Pfam PF00571 CBS domain 206 261 8.1E-6 T 13-10-2018 IPR000644 CBS domain CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 Gene3D G3DSA:3.40.50.10490 11 201 2.4E-64 T 13-10-2018 CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 SUPERFAMILY SSF53697 14 326 1.22E-67 T 13-10-2018 CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 PIRSF PIRSF004692 2 328 3.0E-134 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 2.2E-129 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CS348_02660 6da71d05adffdce63ad4de09997dcbf6 328 Pfam PF01380 SIS domain 46 177 1.8E-34 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_00175 b102cb033b46bfb671a8209b463e7b36 445 Pfam PF02447 GntP family permease 7 444 5.3E-162 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_00175 b102cb033b46bfb671a8209b463e7b36 445 PIRSF PIRSF002746 2 445 3.4E-144 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_00175 b102cb033b46bfb671a8209b463e7b36 445 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 445 7.0E-171 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_13225 34ed810e08171bc2b8af76c25d81a2cf 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_13225 34ed810e08171bc2b8af76c25d81a2cf 248 SUPERFAMILY SSF52540 2 231 9.48E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_13225 34ed810e08171bc2b8af76c25d81a2cf 248 Pfam PF00005 ABC transporter 17 172 2.1E-20 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_13225 34ed810e08171bc2b8af76c25d81a2cf 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 7.5E-115 T 13-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 CS348_13225 34ed810e08171bc2b8af76c25d81a2cf 248 SMART SM00382 26 223 8.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_13225 34ed810e08171bc2b8af76c25d81a2cf 248 Gene3D G3DSA:3.40.50.300 1 248 1.6E-68 T 13-10-2018 CS348_24750 59dd294b34b691b037858ace10140ea0 142 ProDom PD012854 PLASMID KLCA ANTIRESTRICTION YFJX YCIB ARDB STABLE YFEB Z1216 C0275 44 142 9.0E-54 T 13-10-2018 IPR004914 Antirestriction protein CS348_24750 59dd294b34b691b037858ace10140ea0 142 Gene3D G3DSA:1.10.472.120 4 142 5.0E-43 T 13-10-2018 CS348_24750 59dd294b34b691b037858ace10140ea0 142 Pfam PF03230 Antirestriction protein 46 142 5.9E-30 T 13-10-2018 IPR004914 Antirestriction protein CS348_07140 746ab424bce2adef8b7445845c36d204 344 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 343 38.386 T 13-10-2018 IPR014524 Outer membrane protein assembly factor BamC CS348_07140 746ab424bce2adef8b7445845c36d204 344 PIRSF PIRSF026343 9 344 7.8E-144 T 13-10-2018 IPR014524 Outer membrane protein assembly factor BamC CS348_07140 746ab424bce2adef8b7445845c36d204 344 Pfam PF06804 NlpB/DapX lipoprotein 40 342 1.5E-110 T 13-10-2018 IPR010653 NlpB/DapX lipoprotein CS348_07140 746ab424bce2adef8b7445845c36d204 344 Gene3D G3DSA:3.30.310.170 226 344 1.1E-53 T 13-10-2018 CS348_07140 746ab424bce2adef8b7445845c36d204 344 Gene3D G3DSA:3.30.530.50 101 212 5.0E-48 T 13-10-2018 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 1.3E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 1.3E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 1.3E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 1.3E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 1.5E-28 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 Gene3D G3DSA:3.40.50.1370 8 304 4.6E-127 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 5.7E-124 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 SUPERFAMILY SSF53671 4 306 1.7E-100 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 37.995 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 Gene3D G3DSA:3.40.50.1370 135 292 4.6E-127 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 2.1E-47 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21305 8b4233a21ce3a9f75a690d98f7336dbc 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_00825 1f37be9d09280574488f68dc83233ccd 231 Gene3D G3DSA:3.40.225.10 1 231 6.6E-64 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_00825 1f37be9d09280574488f68dc83233ccd 231 SMART SM01007 7 198 2.1E-70 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_00825 1f37be9d09280574488f68dc83233ccd 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 1.6E-131 T 13-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 CS348_00825 1f37be9d09280574488f68dc83233ccd 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 1.2E-47 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_00825 1f37be9d09280574488f68dc83233ccd 231 SUPERFAMILY SSF53639 1 223 3.14E-71 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 SUPERFAMILY SSF51569 4 357 2.38E-131 T 13-10-2018 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 8.9E-193 T 13-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 PIRSF PIRSF001359 13 359 9.5E-107 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 2.6E-117 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 4.9E-88 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_04615 9092e996b8667a56ef6e5a0771dc439e 359 Gene3D G3DSA:3.20.20.70 2 359 2.1E-155 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 SUPERFAMILY SSF56601 23 473 7.16E-101 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 20 468 1.5E-172 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 Gene3D G3DSA:3.40.710.10 244 477 1.5E-66 T 13-10-2018 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 Gene3D G3DSA:3.40.710.10 20 86 8.2E-7 T 13-10-2018 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 47 447 2.9E-182 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 58 77 8.2E-39 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 360 374 8.2E-39 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 424 437 8.2E-39 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 286 308 8.2E-39 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 345 359 8.2E-39 T 13-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_02735 f34bef209ddb0fa2a661d035373198c5 477 Gene3D G3DSA:3.50.80.20 87 171 2.1E-24 T 13-10-2018 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 Gene3D G3DSA:2.60.40.1180 665 772 1.2E-47 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 SUPERFAMILY SSF51011 586 665 1.22E-20 T 13-10-2018 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 Gene3D G3DSA:2.60.40.1180 617 664 8.7E-20 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 Gene3D G3DSA:3.20.20.80 246 616 2.4E-159 T 13-10-2018 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 SUPERFAMILY SSF51445 263 603 1.53E-91 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 SUPERFAMILY SSF74650 1 247 9.42E-66 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 Pfam PF01055 Glycosyl hydrolases family 31 240 667 4.6E-120 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 Gene3D G3DSA:2.60.40.1760 1 245 5.0E-77 T 13-10-2018 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 SUPERFAMILY SSF117125 666 772 2.09E-35 T 13-10-2018 CS348_00470 e130e1a7c61561b9945da57ac88a744a 772 Pfam PF13802 Galactose mutarotase-like 159 218 1.1E-15 T 13-10-2018 IPR025887 Glycoside hydrolase family 31, N-terminal domain CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 PRINTS PR00171 Sugar transporter signature 268 278 2.8E-19 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 PRINTS PR00171 Sugar transporter signature 32 42 2.8E-19 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 PRINTS PR00171 Sugar transporter signature 361 382 2.8E-19 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 PRINTS PR00171 Sugar transporter signature 384 396 2.8E-19 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 PRINTS PR00171 Sugar transporter signature 115 134 2.8E-19 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 SUPERFAMILY SSF103473 15 458 9.29E-71 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 6 456 1.4E-146 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 ProSitePatterns PS00216 Sugar transport proteins signature 1. 313 329 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 Gene3D G3DSA:1.20.1250.20 15 459 2.7E-123 T 13-10-2018 CS348_04915 5b0191715baa85a6f8637a5a7bc339f5 471 Pfam PF00083 Sugar (and other) transporter 25 459 5.5E-132 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_22445 14e431d64eea0e349df1b306416fbbfb 138 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 6 138 5.3E-45 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 CS348_22445 14e431d64eea0e349df1b306416fbbfb 138 SUPERFAMILY SSF111038 1 138 1.96E-44 T 13-10-2018 IPR035917 YjbQ-like superfamily CS348_22445 14e431d64eea0e349df1b306416fbbfb 138 Pfam PF01894 Uncharacterised protein family UPF0047 19 134 1.2E-32 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 CS348_22445 14e431d64eea0e349df1b306416fbbfb 138 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 99 117 - T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 CS348_22445 14e431d64eea0e349df1b306416fbbfb 138 PIRSF PIRSF004681 1 138 4.6E-41 T 13-10-2018 IPR001602 Uncharacterised protein family UPF0047 CS348_22445 14e431d64eea0e349df1b306416fbbfb 138 Gene3D G3DSA:2.60.120.460 2 138 7.0E-37 T 13-10-2018 IPR035917 YjbQ-like superfamily CS348_10935 9b70af5b16e8e6966670c91727d46c3b 207 Pfam PF03550 Outer membrane lipoprotein LolB 50 204 1.7E-49 T 13-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 CS348_10935 9b70af5b16e8e6966670c91727d46c3b 207 Gene3D G3DSA:2.50.20.10 30 207 2.8E-67 T 13-10-2018 CS348_10935 9b70af5b16e8e6966670c91727d46c3b 207 SUPERFAMILY SSF89392 34 206 9.42E-56 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX CS348_10935 9b70af5b16e8e6966670c91727d46c3b 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 29.392 T 13-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 CS348_10935 9b70af5b16e8e6966670c91727d46c3b 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 5 206 1.8E-94 T 13-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 CS348_01090 704773a8ab82446c8372615d6f784ec3 337 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 306 8.2E-19 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_01090 704773a8ab82446c8372615d6f784ec3 337 Pfam PF00005 ABC transporter 38 189 4.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01090 704773a8ab82446c8372615d6f784ec3 337 Gene3D G3DSA:3.40.50.300 11 335 1.9E-95 T 13-10-2018 CS348_01090 704773a8ab82446c8372615d6f784ec3 337 SMART SM00382 47 239 6.5E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01090 704773a8ab82446c8372615d6f784ec3 337 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 324 7.6E-26 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_01090 704773a8ab82446c8372615d6f784ec3 337 SUPERFAMILY SSF52540 13 261 1.33E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01090 704773a8ab82446c8372615d6f784ec3 337 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 Gene3D G3DSA:1.10.10.60 16 79 1.8E-34 T 13-10-2018 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 SUPERFAMILY SSF46689 27 76 1.34E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 Gene3D G3DSA:1.10.10.60 80 144 2.4E-19 T 13-10-2018 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 79 121 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 Pfam PF12833 Helix-turn-helix domain 49 125 1.0E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 SMART SM00342 42 125 3.0E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_12435 bbb3965d4bc4f785398261c11ee1cdfc 144 SUPERFAMILY SSF46689 79 128 7.62E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_07235 4aafc368625eaf16d3828b8ca3fa8b44 159 Gene3D G3DSA:3.40.50.300 1 157 1.5E-14 T 13-10-2018 CS348_07235 4aafc368625eaf16d3828b8ca3fa8b44 159 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 1 143 2.5E-28 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CS348_07235 4aafc368625eaf16d3828b8ca3fa8b44 159 TIGRFAM TIGR02528 EutP: ethanolamine utilization protein, EutP 2 143 3.1E-53 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CS348_07235 4aafc368625eaf16d3828b8ca3fa8b44 159 PIRSF PIRSF036409 1 148 2.5E-54 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CS348_07235 4aafc368625eaf16d3828b8ca3fa8b44 159 SUPERFAMILY SSF52540 3 147 1.73E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08760 18efaeaae604176f05ccad3d8378909c 214 Gene3D G3DSA:3.40.30.10 1 88 5.2E-24 T 13-10-2018 CS348_08760 18efaeaae604176f05ccad3d8378909c 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 3.4E-16 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_08760 18efaeaae604176f05ccad3d8378909c 214 Pfam PF13410 Glutathione S-transferase, C-terminal domain 135 193 8.2E-7 T 13-10-2018 CS348_08760 18efaeaae604176f05ccad3d8378909c 214 SUPERFAMILY SSF52833 1 89 7.62E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_08760 18efaeaae604176f05ccad3d8378909c 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 2 211 3.9E-90 T 13-10-2018 IPR005955 Glutathione S-transferases, class Zeta GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-204174|Reactome: R-HSA-71182 CS348_08760 18efaeaae604176f05ccad3d8378909c 214 Gene3D G3DSA:1.20.1050.10 89 213 1.7E-48 T 13-10-2018 CS348_08760 18efaeaae604176f05ccad3d8378909c 214 SUPERFAMILY SSF47616 81 211 4.97E-32 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_02800 e922d07503fc93ea039702845df90f52 154 SUPERFAMILY SSF75420 6 86 1.7E-25 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily CS348_02800 e922d07503fc93ea039702845df90f52 154 SUPERFAMILY SSF74942 87 154 4.18E-16 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CS348_02800 e922d07503fc93ea039702845df90f52 154 Pfam PF02576 RimP N-terminal domain 16 86 1.2E-28 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal CS348_02800 e922d07503fc93ea039702845df90f52 154 Pfam PF17384 RimP C-terminal SH3 domain 89 154 9.5E-22 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal CS348_02800 e922d07503fc93ea039702845df90f52 154 Gene3D G3DSA:3.30.300.70 4 83 7.2E-26 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily CS348_02800 e922d07503fc93ea039702845df90f52 154 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 10 154 24.174 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.1E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 PRINTS PR01011 Glutathione peroxidase family signature 143 152 2.1E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.1E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 Pfam PF00255 Glutathione peroxidase 7 111 6.2E-45 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 13-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 PIRSF PIRSF000303 1 183 1.7E-64 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 183 49.214 T 13-10-2018 IPR033674 Thioredoxin/glutathione peroxidase BtuE KEGG: 00480+1.11.1.15+1.11.1.9|KEGG: 00590+1.11.1.9|MetaCyc: PWY-4081 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 Gene3D G3DSA:3.40.30.10 1 183 5.0E-62 T 13-10-2018 CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 SUPERFAMILY SSF52833 5 182 1.8E-55 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_13375 fe9e5f030f70e653d4410385e44bbea1 183 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 13-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 CS348_12905 977e8230478e6ab0953f06e3198e7e62 284 SUPERFAMILY SSF54001 145 278 4.9E-41 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_12905 977e8230478e6ab0953f06e3198e7e62 284 Pfam PF00877 NlpC/P60 family 166 276 1.1E-32 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CS348_12905 977e8230478e6ab0953f06e3198e7e62 284 Gene3D G3DSA:3.90.1720.10 144 279 5.6E-42 T 13-10-2018 CS348_19930 109856e801ac198c306ebbf54f45a054 629 Gene3D G3DSA:3.40.720.10 58 606 3.6E-82 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_19930 109856e801ac198c306ebbf54f45a054 629 SUPERFAMILY SSF53649 65 597 1.22E-83 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_19930 109856e801ac198c306ebbf54f45a054 629 Pfam PF00884 Sulfatase 67 439 2.1E-38 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_20015 1909597d34accf63f3ff333fb0e7f3f6 198 Hamap MF_01525 Carnitine operon protein CaiE [caiE]. 1 196 58.929 T 13-10-2018 IPR023446 Carnitine operon protein CaiE CS348_20015 1909597d34accf63f3ff333fb0e7f3f6 198 Gene3D G3DSA:2.160.10.10 1 172 7.4E-47 T 13-10-2018 CS348_20015 1909597d34accf63f3ff333fb0e7f3f6 198 SUPERFAMILY SSF51161 3 165 1.94E-41 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_20015 1909597d34accf63f3ff333fb0e7f3f6 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 12 41 3.6E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_20015 1909597d34accf63f3ff333fb0e7f3f6 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 6.1E-7 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_22080 c9461b69097a6f6c7841cb0960545a21 96 PRINTS PR01554 Escherichia coli P pili regulatory PapB protein signature 29 44 9.3E-18 T 13-10-2018 IPR004356 Adhesin operon regulatory protein GO:0006355 CS348_22080 c9461b69097a6f6c7841cb0960545a21 96 PRINTS PR01554 Escherichia coli P pili regulatory PapB protein signature 49 65 9.3E-18 T 13-10-2018 IPR004356 Adhesin operon regulatory protein GO:0006355 CS348_22080 c9461b69097a6f6c7841cb0960545a21 96 PRINTS PR01554 Escherichia coli P pili regulatory PapB protein signature 67 82 9.3E-18 T 13-10-2018 IPR004356 Adhesin operon regulatory protein GO:0006355 CS348_22080 c9461b69097a6f6c7841cb0960545a21 96 Pfam PF03333 Adhesin biosynthesis transcription regulatory protein 14 92 2.3E-33 T 13-10-2018 IPR004356 Adhesin operon regulatory protein GO:0006355 CS348_22080 c9461b69097a6f6c7841cb0960545a21 96 Gene3D G3DSA:1.10.10.2690 4 96 6.2E-34 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 Pfam PF07690 Major Facilitator Superfamily 22 412 2.0E-50 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 Gene3D G3DSA:1.20.1250.20 262 449 9.1E-25 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 SUPERFAMILY SSF103473 10 447 1.05E-64 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 Gene3D G3DSA:1.20.1720.10 18 256 2.1E-43 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 141 165 3.6E-9 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 20 44 3.6E-9 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 3.6E-9 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 305 329 3.6E-9 T 13-10-2018 CS348_10595 6a6b5492d69caa18c3d050a4c242e065 457 PRINTS PR01036 Tetracycline resistance protein TetB signature 111 131 3.6E-9 T 13-10-2018 CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 3.1E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 6.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 6.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 6.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 6.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 Gene3D G3DSA:3.40.50.1000 9 203 5.4E-23 T 13-10-2018 IPR023214 HAD superfamily CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 SUPERFAMILY SSF56784 6 217 1.96E-46 T 13-10-2018 IPR036412 HAD-like superfamily CS348_01695 5685ed63f2ca63edf66c0782fe908b79 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 4.6E-10 T 13-10-2018 CS348_20295 3b3fb0925e2a369dcc79b6b0ce8cc393 315 SUPERFAMILY SSF46785 9 87 2.45E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_20295 3b3fb0925e2a369dcc79b6b0ce8cc393 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 4.5E-12 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_20295 3b3fb0925e2a369dcc79b6b0ce8cc393 315 Gene3D G3DSA:1.10.10.10 4 89 6.6E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20295 3b3fb0925e2a369dcc79b6b0ce8cc393 315 Gene3D G3DSA:3.40.190.10 102 295 3.2E-12 T 13-10-2018 CS348_20295 3b3fb0925e2a369dcc79b6b0ce8cc393 315 SUPERFAMILY SSF53850 129 308 4.52E-13 T 13-10-2018 CS348_20295 3b3fb0925e2a369dcc79b6b0ce8cc393 315 Gene3D G3DSA:3.40.190.10 174 282 3.2E-12 T 13-10-2018 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 Gene3D G3DSA:3.40.710.10 24 284 7.7E-94 T 13-10-2018 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 Gene3D G3DSA:2.60.410.10 285 376 1.4E-26 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 SUPERFAMILY SSF56601 13 285 2.82E-83 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 SMART SM00936 285 376 3.3E-34 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 285 376 3.0E-23 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 SUPERFAMILY SSF69189 285 378 5.69E-25 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 32 266 2.1E-100 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 65 76 1.4E-18 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 164 1.4E-18 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_16005 f1fadb2e02163942a5663812a06a7b0b 400 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 124 141 1.4E-18 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_00415 aebb9b059d667555046d1d9f972ba841 285 Gene3D G3DSA:1.10.10.10 31 135 5.4E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00415 aebb9b059d667555046d1d9f972ba841 285 SMART SM00862 56 134 8.4E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_00415 aebb9b059d667555046d1d9f972ba841 285 Pfam PF00486 Transcriptional regulatory protein, C terminal 59 133 4.0E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_00415 aebb9b059d667555046d1d9f972ba841 285 SUPERFAMILY SSF46894 50 134 6.8E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_16090 d689491ffdbfb893694593aa72e3a3d4 512 Gene3D G3DSA:3.40.190.10 186 496 4.3E-184 T 13-10-2018 CS348_16090 d689491ffdbfb893694593aa72e3a3d4 512 Gene3D G3DSA:3.90.76.10 37 185 4.3E-184 T 13-10-2018 CS348_16090 d689491ffdbfb893694593aa72e3a3d4 512 PIRSF PIRSF002741 8 511 5.2E-110 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_16090 d689491ffdbfb893694593aa72e3a3d4 512 Gene3D G3DSA:3.10.105.10 261 486 4.3E-184 T 13-10-2018 CS348_16090 d689491ffdbfb893694593aa72e3a3d4 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 429 1.0E-99 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_16090 d689491ffdbfb893694593aa72e3a3d4 512 SUPERFAMILY SSF53850 30 511 6.45E-146 T 13-10-2018 CS348_12430 0486672b31e26ae05d66bab78383cf91 144 SUPERFAMILY SSF46785 5 143 8.67E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12430 0486672b31e26ae05d66bab78383cf91 144 Pfam PF01047 MarR family 38 96 6.7E-20 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12430 0486672b31e26ae05d66bab78383cf91 144 SMART SM00347 31 132 2.1E-35 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12430 0486672b31e26ae05d66bab78383cf91 144 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CS348_12430 0486672b31e26ae05d66bab78383cf91 144 Gene3D G3DSA:1.10.10.10 7 144 8.5E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12430 0486672b31e26ae05d66bab78383cf91 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 1.6E-25 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12430 0486672b31e26ae05d66bab78383cf91 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 1.6E-25 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12430 0486672b31e26ae05d66bab78383cf91 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 122 142 1.6E-25 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_12430 0486672b31e26ae05d66bab78383cf91 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 1.6E-25 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_00430 563348c3f1a28c96637e97e6ef7c1afb 205 ProDom PD116027 TRANSCRIPTION DNA-BINDING REGULATION RMBA YQEH ORF3-QACEDELTA1 FUSION CYTOPLASMIC ECS3703 TRANSMEMBRANE 1 205 4.0E-108 T 13-10-2018 CS348_06940 6bc68ccbe25b101204ac947d1cebda2b 334 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 329 45.109 T 13-10-2018 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 CS348_06940 6bc68ccbe25b101204ac947d1cebda2b 334 Gene3D G3DSA:1.10.260.40 4 111 6.2E-20 T 13-10-2018 CS348_06940 6bc68ccbe25b101204ac947d1cebda2b 334 Pfam PF13413 Helix-turn-helix domain 18 78 9.3E-15 T 13-10-2018 CS348_06940 6bc68ccbe25b101204ac947d1cebda2b 334 Pfam PF13464 Domain of unknown function (DUF4115) 252 326 1.1E-23 T 13-10-2018 IPR025194 Domain of unknown function DUF4115 CS348_06940 6bc68ccbe25b101204ac947d1cebda2b 334 SUPERFAMILY SSF47413 14 83 2.31E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_06940 6bc68ccbe25b101204ac947d1cebda2b 334 SMART SM00530 18 79 6.1E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 SUPERFAMILY SSF57716 142 190 7.13E-17 T 13-10-2018 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 PIRSF PIRSF035805 1 200 3.0E-57 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 13-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 Pfam PF00265 Thymidine kinase 2 186 4.4E-66 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 35.442 T 13-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 Gene3D G3DSA:3.40.50.300 1 141 5.4E-25 T 13-10-2018 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 Gene3D G3DSA:3.30.60.20 143 187 7.8E-10 T 13-10-2018 CS348_11095 db705316f91ffeb92e6e37fbaf7f18c4 205 SUPERFAMILY SSF52540 1 141 9.57E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00185 aadbebe7018c887930b3931958f52496 361 Gene3D G3DSA:3.20.20.80 25 324 1.7E-28 T 13-10-2018 CS348_00185 aadbebe7018c887930b3931958f52496 361 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 63 265 6.5E-10 T 13-10-2018 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 CS348_00185 aadbebe7018c887930b3931958f52496 361 SUPERFAMILY SSF51445 44 318 3.72E-32 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_08545 668962883c73f9f2cbfee97ff616b9b2 190 SUPERFAMILY SSF54001 69 187 5.89E-41 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_08545 668962883c73f9f2cbfee97ff616b9b2 190 Gene3D G3DSA:3.90.1720.10 64 190 1.9E-47 T 13-10-2018 CS348_08545 668962883c73f9f2cbfee97ff616b9b2 190 Pfam PF00877 NlpC/P60 family 81 185 1.1E-33 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CS348_10820 7bffbaab0c642d747b3b837d554944d6 304 SUPERFAMILY SSF141986 139 288 4.05E-41 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CS348_10820 7bffbaab0c642d747b3b837d554944d6 304 Pfam PF02016 LD-carboxypeptidase 6 285 6.8E-68 T 13-10-2018 IPR003507 Peptidase family S66 CS348_10820 7bffbaab0c642d747b3b837d554944d6 304 Gene3D G3DSA:3.50.30.60 160 292 2.6E-41 T 13-10-2018 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CS348_10820 7bffbaab0c642d747b3b837d554944d6 304 Gene3D G3DSA:3.40.50.10740 3 157 2.4E-35 T 13-10-2018 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CS348_10820 7bffbaab0c642d747b3b837d554944d6 304 PIRSF PIRSF028757 1 300 5.1E-84 T 13-10-2018 IPR003507 Peptidase family S66 CS348_10820 7bffbaab0c642d747b3b837d554944d6 304 SUPERFAMILY SSF52317 5 160 2.15E-34 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 SUPERFAMILY SSF100950 241 507 2.06E-62 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 PIRSF PIRSF009451 1 509 2.3E-266 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 42 507 2.5E-267 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 SUPERFAMILY SSF100950 35 237 9.42E-75 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 34 509 5.4E-244 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 Gene3D G3DSA:3.40.1080.10 7 238 1.2E-96 T 13-10-2018 CS348_17130 edabe95936682cbe9d7f513ac534b44b 509 Gene3D G3DSA:3.40.1080.10 240 509 1.3E-125 T 13-10-2018 CS348_03705 82a3ec685292ae230ba18a12d9f37d09 579 ProSitePatterns PS00523 Sulfatases signature 1. 70 82 - T 13-10-2018 IPR024607 Sulfatase, conserved site CS348_03705 82a3ec685292ae230ba18a12d9f37d09 579 SUPERFAMILY SSF53649 24 532 2.22E-125 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_03705 82a3ec685292ae230ba18a12d9f37d09 579 Gene3D G3DSA:3.30.1120.10 457 541 1.9E-16 T 13-10-2018 CS348_03705 82a3ec685292ae230ba18a12d9f37d09 579 Pfam PF00884 Sulfatase 26 428 1.5E-63 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_03705 82a3ec685292ae230ba18a12d9f37d09 579 ProSitePatterns PS00149 Sulfatases signature 2. 124 134 - T 13-10-2018 IPR024607 Sulfatase, conserved site CS348_03705 82a3ec685292ae230ba18a12d9f37d09 579 Gene3D G3DSA:3.40.720.10 23 456 6.0E-118 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 Gene3D G3DSA:2.40.50.940 223 349 5.8E-30 T 13-10-2018 CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 Gene3D G3DSA:2.40.50.140 285 340 5.8E-30 T 13-10-2018 CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 SUPERFAMILY SSF52540 4 242 1.03E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 SMART SM00382 29 212 7.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 SUPERFAMILY SSF50331 237 355 8.99E-30 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 Pfam PF00005 ABC transporter 21 162 7.8E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 Gene3D G3DSA:3.40.50.300 4 222 1.4E-61 T 13-10-2018 CS348_01465 f70ec9987e0f9e1ba75f66944cf00c6a 356 Pfam PF08402 TOBE domain 278 348 1.3E-10 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 Gene3D G3DSA:3.40.50.1400 163 301 5.7E-92 T 13-10-2018 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 TIGRFAM TIGR00109 hemH: ferrochelatase 1 316 1.2E-125 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 Pfam PF00762 Ferrochelatase 5 316 4.5E-110 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 Gene3D G3DSA:3.40.50.1400 5 316 5.7E-92 T 13-10-2018 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 SUPERFAMILY SSF53800 4 317 7.98E-103 T 13-10-2018 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CS348_17910 ae14550fb15c27adb6fe17c8547efa1e 320 Hamap MF_00323 Ferrochelatase [hemH]. 4 320 38.316 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CS348_21565 cb7bb48f06255efe751ed3e2b5ad1361 197 SUPERFAMILY SSF55068 5 197 9.03E-82 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CS348_21565 cb7bb48f06255efe751ed3e2b5ad1361 197 Gene3D G3DSA:3.30.1060.10 2 193 8.0E-89 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CS348_21565 cb7bb48f06255efe751ed3e2b5ad1361 197 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 43 197 35.653 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CS348_21565 cb7bb48f06255efe751ed3e2b5ad1361 197 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 197 2.8E-68 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CS348_21565 cb7bb48f06255efe751ed3e2b5ad1361 197 Pfam PF01625 Peptide methionine sulfoxide reductase 46 196 4.9E-66 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CS348_01685 f427f27143a12830a982839e29f4f64b 292 Gene3D G3DSA:1.10.287.480 177 225 1.5E-25 T 13-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily CS348_01685 f427f27143a12830a982839e29f4f64b 292 PIRSF PIRSF005261 1 285 4.9E-71 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CS348_01685 f427f27143a12830a982839e29f4f64b 292 Gene3D G3DSA:3.55.30.10 1 176 2.3E-68 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CS348_01685 f427f27143a12830a982839e29f4f64b 292 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 284 33.83 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CS348_01685 f427f27143a12830a982839e29f4f64b 292 SUPERFAMILY SSF118352 225 283 8.11E-20 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CS348_01685 f427f27143a12830a982839e29f4f64b 292 SUPERFAMILY SSF64397 4 232 4.71E-76 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CS348_01685 f427f27143a12830a982839e29f4f64b 292 Gene3D G3DSA:3.90.1280.10 226 285 6.3E-26 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CS348_01685 f427f27143a12830a982839e29f4f64b 292 Pfam PF01430 Hsp33 protein 5 272 4.7E-85 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CS348_06380 a728738cb330d52cf23e44413bdfec81 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 510 5.1E-18 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CS348_06380 a728738cb330d52cf23e44413bdfec81 553 SUPERFAMILY SSF52540 4 506 2.1E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06380 a728738cb330d52cf23e44413bdfec81 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 3.9E-170 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CS348_06380 a728738cb330d52cf23e44413bdfec81 553 Gene3D G3DSA:3.40.50.300 265 553 7.8E-49 T 13-10-2018 CS348_06380 a728738cb330d52cf23e44413bdfec81 553 Gene3D G3DSA:3.40.50.300 1 264 4.0E-46 T 13-10-2018 CS348_06380 a728738cb330d52cf23e44413bdfec81 553 PIRSF PIRSF003128 1 553 1.4E-157 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CS348_06380 a728738cb330d52cf23e44413bdfec81 553 SUPERFAMILY SSF52540 1 217 9.15E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 Pfam PF13954 PapC N-terminal domain 33 181 8.4E-44 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 Gene3D G3DSA:3.10.20.410 51 169 3.2E-35 T 13-10-2018 CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 Gene3D G3DSA:2.60.40.3110 268 357 4.4E-37 T 13-10-2018 CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 SUPERFAMILY SSF49401 800 934 4.28E-14 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 Pfam PF00419 Fimbrial protein 792 936 1.4E-22 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 Pfam PF00577 Outer membrane usher protein 198 675 3.2E-150 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 Gene3D G3DSA:2.60.40.1090 803 936 3.4E-21 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_19450 acfd5a8bbbf9cb74b769774867076d4a 937 SUPERFAMILY SSF141729 61 172 1.83E-27 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 SMART SM00382 31 218 3.7E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 Pfam PF00571 CBS domain 257 306 5.2E-7 T 13-10-2018 IPR000644 CBS domain CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 Pfam PF00571 CBS domain 326 368 0.0068 T 13-10-2018 IPR000644 CBS domain CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 20 367 1.5E-106 T 13-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 SMART SM00116 263 311 1.6E-6 T 13-10-2018 IPR000644 CBS domain CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 SUPERFAMILY SSF52540 1 245 2.57E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 SUPERFAMILY SSF54631 255 369 1.3E-16 T 13-10-2018 CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 Pfam PF00005 ABC transporter 22 168 1.8E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 Gene3D G3DSA:3.10.580.10 270 364 3.8E-11 T 13-10-2018 CS348_12585 8ad89dc5160446d619615aa30f5b3329 382 Gene3D G3DSA:3.40.50.300 1 269 5.5E-75 T 13-10-2018 CS348_24150 2febcfae5df3c902793b60fed5a9658f 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 61.432 T 13-10-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 CS348_24150 2febcfae5df3c902793b60fed5a9658f 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 66 231 7.9E-53 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 CS348_24150 2febcfae5df3c902793b60fed5a9658f 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 61 237 2.1E-76 T 13-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 CS348_05915 fc4f077eb268a92f29017fcaaedd8fa3 61 Gene3D G3DSA:3.30.70.1680 1 61 3.5E-32 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 CS348_05915 fc4f077eb268a92f29017fcaaedd8fa3 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 CS348_05915 fc4f077eb268a92f29017fcaaedd8fa3 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 57 2.0E-31 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CS348_05915 fc4f077eb268a92f29017fcaaedd8fa3 61 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 60 17.328 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CS348_05915 fc4f077eb268a92f29017fcaaedd8fa3 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-20 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CS348_05915 fc4f077eb268a92f29017fcaaedd8fa3 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CS348_12480 3075d4aeab6dd231e8b38237f7e05b13 680 SUPERFAMILY SSF55486 4 678 4.23E-168 T 13-10-2018 CS348_12480 3075d4aeab6dd231e8b38237f7e05b13 680 Gene3D G3DSA:1.10.1370.40 34 672 3.3E-243 T 13-10-2018 CS348_12480 3075d4aeab6dd231e8b38237f7e05b13 680 Pfam PF01432 Peptidase family M3 230 675 3.6E-133 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 CS348_12480 3075d4aeab6dd231e8b38237f7e05b13 680 Gene3D G3DSA:1.10.1370.10 145 610 3.3E-243 T 13-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CS348_21535 05278c1a05c74e38bec78e0ac6dd08d6 176 Pfam PF00719 Inorganic pyrophosphatase 18 172 4.5E-55 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CS348_21535 05278c1a05c74e38bec78e0ac6dd08d6 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CS348_21535 05278c1a05c74e38bec78e0ac6dd08d6 176 SUPERFAMILY SSF50324 4 173 8.9E-67 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CS348_21535 05278c1a05c74e38bec78e0ac6dd08d6 176 Gene3D G3DSA:3.90.80.10 2 176 1.1E-70 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CS348_21535 05278c1a05c74e38bec78e0ac6dd08d6 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.972 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CS348_22075 ca0c4ad65b5763d3d9cdedfd8d7f961e 179 SUPERFAMILY SSF49401 27 179 1.54E-9 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_22075 ca0c4ad65b5763d3d9cdedfd8d7f961e 179 Gene3D G3DSA:2.60.40.1090 26 178 3.3E-6 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_22075 ca0c4ad65b5763d3d9cdedfd8d7f961e 179 PIRSF PIRSF002967 1 179 1.0E-100 T 13-10-2018 IPR016372 K88 fimbrial protein A CS348_03415 e16a7756609ee12da7b4054ede07a244 76 ProSitePatterns PS00539 Pyrokinins signature. 72 76 - T 13-10-2018 IPR001484 Pyrokinin, conserved site GO:0005184|GO:0007218 CS348_03415 e16a7756609ee12da7b4054ede07a244 76 Gene3D G3DSA:1.20.5.190 18 72 3.9E-21 T 13-10-2018 CS348_03415 e16a7756609ee12da7b4054ede07a244 76 PIRSF PIRSF002855 1 73 6.4E-24 T 13-10-2018 IPR016367 Murein-lipoprotein CS348_03415 e16a7756609ee12da7b4054ede07a244 76 Pfam PF04728 Lipoprotein leucine-zipper 22 66 5.2E-14 T 13-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 CS348_03415 e16a7756609ee12da7b4054ede07a244 76 SUPERFAMILY SSF58042 20 67 1.7E-16 T 13-10-2018 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 PRINTS PR00070 Dihydrofolate reductase signature 27 35 9.8E-15 T 13-10-2018 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 PRINTS PR00070 Dihydrofolate reductase signature 40 51 9.8E-15 T 13-10-2018 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 PRINTS PR00070 Dihydrofolate reductase signature 90 104 9.8E-15 T 13-10-2018 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 PRINTS PR00070 Dihydrofolate reductase signature 13 23 9.8E-15 T 13-10-2018 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 13-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 Pfam PF00186 Dihydrofolate reductase 1 158 1.1E-58 T 13-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 PIRSF PIRSF000194 1 159 2.9E-57 T 13-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 SUPERFAMILY SSF53597 1 159 1.83E-55 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 Gene3D G3DSA:3.40.430.10 1 118 3.7E-51 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CS348_19905 6226c2b54fb6099c8d266aa91a8f1151 159 Gene3D G3DSA:3.40.430.10 119 152 8.8E-6 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 SMART SM00841 133 188 3.1E-27 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 4.5E-19 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Gene3D G3DSA:2.30.30.30 1 64 2.2E-15 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 124 6.2E-14 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 SUPERFAMILY SSF50249 67 130 1.37E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 SUPERFAMILY SSF50104 1 65 2.35E-11 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 SUPERFAMILY SSF50249 132 189 7.37E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 2.2E-101 T 13-10-2018 IPR011897 Translation elongation factor P-like, YeiP CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 62 8.6E-17 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Gene3D G3DSA:2.40.50.140 132 189 7.0E-21 T 13-10-2018 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 PIRSF PIRSF005901 1 190 5.8E-60 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 SMART SM01185 69 125 2.9E-14 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Gene3D G3DSA:2.40.50.140 66 130 3.2E-16 T 13-10-2018 CS348_08565 e202e0a5751214a35085adc7b6ee0724 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 43.393 T 13-10-2018 IPR011897 Translation elongation factor P-like, YeiP CS348_19990 9133d7a1375d9d9405cdb919e26d182a 505 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 14 499 1.7E-115 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 CS348_19990 9133d7a1375d9d9405cdb919e26d182a 505 ProSitePatterns PS01303 BCCT family of transporters signature. 315 324 - T 13-10-2018 IPR018093 BCCT transporter, conserved site CS348_19990 9133d7a1375d9d9405cdb919e26d182a 505 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 52 499 3.3E-167 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 CS348_19990 9133d7a1375d9d9405cdb919e26d182a 505 Hamap MF_01049 L-carnitine/gamma-butyrobetaine antiporter [caiT]. 1 504 61.725 T 13-10-2018 IPR023449 L-carnitine/gamma-butyrobetaine antiporter CaiT GO:0016020|GO:0044667|GO:1900749|GO:1900751 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 Gene3D G3DSA:3.30.1370.120 103 169 1.7E-16 T 13-10-2018 IPR038591 NolW-like superfamily CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 Gene3D G3DSA:3.30.1370.120 175 266 3.0E-11 T 13-10-2018 IPR038591 NolW-like superfamily CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 30 491 1.2E-146 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 Gene3D G3DSA:3.55.50.30 16 101 4.2E-19 T 13-10-2018 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 Pfam PF03958 Bacterial type II/III secretion system short domain 177 267 8.9E-15 T 13-10-2018 IPR005644 NolW-like CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 Pfam PF00263 Bacterial type II and III secretion system protein 331 490 9.1E-33 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 344 363 1.5E-39 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 469 488 1.5E-39 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 378 393 1.5E-39 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 189 206 1.5E-39 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 270 290 1.5E-39 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_13110 602fdefd9f9c524623ee67e735214e3c 497 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 436 469 - T 13-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 SMART SM00739 4 31 9.8E-4 T 13-10-2018 IPR005824 KOW CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 4.4E-23 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 Pfam PF00467 KOW motif 8 37 7.7E-5 T 13-10-2018 IPR005824 KOW CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 Gene3D G3DSA:2.30.30.30 2 104 3.6E-40 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 SUPERFAMILY SSF50104 4 100 4.99E-33 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 1.8E-39 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02065 6b7ccdff1a20f5f179f0a5ae75803645 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 20.052 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_24455 9e884a5752a23636166a80196d027b9b 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 4.9E-62 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 CS348_24455 9e884a5752a23636166a80196d027b9b 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 1.5E-39 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CS348_24455 9e884a5752a23636166a80196d027b9b 156 SUPERFAMILY SSF81573 63 121 1.96E-15 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CS348_24455 9e884a5752a23636166a80196d027b9b 156 Gene3D G3DSA:1.20.5.620 62 122 1.5E-25 T 13-10-2018 CS348_24455 9e884a5752a23636166a80196d027b9b 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.099 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CS348_02490 3d8d3108f6b38d05f48c9e4c420f45cf 132 Pfam PF06295 Protein of unknown function (DUF1043) 6 126 1.3E-48 T 13-10-2018 IPR009386 Protein of unknown function DUF1043 CS348_02490 3d8d3108f6b38d05f48c9e4c420f45cf 132 PIRSF PIRSF006318 1 132 2.0E-51 T 13-10-2018 IPR009386 Protein of unknown function DUF1043 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 155 4.0E-85 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 153 2.0E-61 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 SUPERFAMILY SSF63411 4 162 2.29E-66 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 Gene3D G3DSA:3.30.1360.80 1 171 1.9E-73 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 PIRSF PIRSF006160 1 162 5.9E-66 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.945 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 5.4E-50 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 5.4E-50 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 5.4E-50 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 5.4E-50 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_05965 d1058295cfbac316c936edfffa37f5d3 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 5.4E-50 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 CS348_11220 f9d6c02945ffe544ace2200409de40ab 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 38.654 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11220 f9d6c02945ffe544ace2200409de40ab 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 3.0E-108 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11220 f9d6c02945ffe544ace2200409de40ab 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 2.0E-99 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11220 f9d6c02945ffe544ace2200409de40ab 268 Gene3D G3DSA:3.20.20.70 1 268 1.6E-100 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11220 f9d6c02945ffe544ace2200409de40ab 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11220 f9d6c02945ffe544ace2200409de40ab 268 SUPERFAMILY SSF51366 1 265 4.71E-91 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 PRINTS PR01022 Outer membrane protein A signature 215 234 7.4E-5 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 PRINTS PR01022 Outer membrane protein A signature 145 160 7.4E-5 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 Pfam PF04355 SmpA / OmlA family 51 123 1.6E-16 T 13-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 Pfam PF00691 OmpA family 157 244 2.7E-15 T 13-10-2018 IPR006665 OmpA-like domain CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 Gene3D G3DSA:3.30.1330.60 136 274 1.1E-26 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 SUPERFAMILY SSF103088 149 269 1.09E-23 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_25210 4cdc34f7d430e5c13114b24e56119535 275 Gene3D G3DSA:3.30.1450.10 51 134 1.8E-7 T 13-10-2018 IPR037873 BamE-like CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 Gene3D G3DSA:1.10.10.60 249 305 7.1E-17 T 13-10-2018 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 267 282 1.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 282 298 1.1E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 Gene3D G3DSA:2.60.120.10 18 112 2.9E-6 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 SUPERFAMILY SSF46689 251 299 1.84E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 252 294 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 SUPERFAMILY SSF47454 137 194 2.48E-11 T 13-10-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily GO:0003677|GO:0006355 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 Pfam PF12833 Helix-turn-helix domain 222 299 4.4E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 SMART SM00342 215 298 2.5E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 Gene3D G3DSA:1.10.10.60 198 248 1.2E-10 T 13-10-2018 CS348_22185 618ddea7ff1a7fc07f9690e184acf6b0 310 SUPERFAMILY SSF51182 42 156 1.01E-7 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_06385 25e65e080cce7d3b37fe78e3cda114fb 292 Gene3D G3DSA:3.40.50.10330 23 287 2.1E-98 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 CS348_06385 25e65e080cce7d3b37fe78e3cda114fb 292 Gene3D G3DSA:2.60.200.30 128 264 2.1E-98 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CS348_06385 25e65e080cce7d3b37fe78e3cda114fb 292 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.119 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CS348_06385 25e65e080cce7d3b37fe78e3cda114fb 292 Pfam PF01513 ATP-NAD kinase 8 271 5.7E-79 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CS348_06385 25e65e080cce7d3b37fe78e3cda114fb 292 SUPERFAMILY SSF111331 7 289 8.37E-93 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.713 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 2.1E-51 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 3.2E-67 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 SUPERFAMILY SSF47928 3 104 4.84E-28 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 13-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.0E-28 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.0E-28 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.0E-28 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.0E-28 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.0E-28 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24460 5f7e589571d078d3d946a3b77b83a52f 177 Gene3D G3DSA:1.10.520.20 2 106 3.4E-39 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_01945 dac1d52d71de7545ed6525f52585842e 118 Hamap MF_00389 Protein TusC [tusC]. 1 118 33.318 T 13-10-2018 IPR037450 Sulphur relay, TusC CS348_01945 dac1d52d71de7545ed6525f52585842e 118 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 3 118 7.9E-46 T 13-10-2018 IPR017462 Sulphur relay, TusC/DsrF CS348_01945 dac1d52d71de7545ed6525f52585842e 118 SUPERFAMILY SSF75169 1 118 4.42E-35 T 13-10-2018 IPR027396 DsrEFH-like CS348_01945 dac1d52d71de7545ed6525f52585842e 118 Gene3D G3DSA:3.40.1260.10 1 118 7.0E-35 T 13-10-2018 IPR027396 DsrEFH-like CS348_01945 dac1d52d71de7545ed6525f52585842e 118 Pfam PF02635 DsrE/DsrF-like family 2 118 6.4E-20 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CS348_11960 4d7ce7df4c0e4f112c516403d71b694b 76 ProDom PD057831 YNCJ PRECURSOR SIGNAL PERIPLASMIC STY1461 1 73 2.0E-36 T 13-10-2018 IPR020117 Uncharacterised protein family YncJ CS348_11960 4d7ce7df4c0e4f112c516403d71b694b 76 Pfam PF10829 Protein of unknown function (DUF2554) 1 76 1.3E-52 T 13-10-2018 IPR020117 Uncharacterised protein family YncJ CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 SUPERFAMILY SSF81891 198 436 1.1E-50 T 13-10-2018 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 Pfam PF01743 Poly A polymerase head domain 69 200 8.3E-40 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 Gene3D G3DSA:3.30.460.10 35 197 1.6E-70 T 13-10-2018 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 227 287 1.4E-19 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 Gene3D G3DSA:1.10.3090.10 198 449 4.8E-104 T 13-10-2018 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 SUPERFAMILY SSF81301 41 196 1.05E-40 T 13-10-2018 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 38 464 7.0E-159 T 13-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 Pfam PF12626 Polymerase A arginine-rich C-terminus 345 464 6.3E-41 T 13-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain CS348_19365 24c912fd456aaed7177b41136fa94e8a 472 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 31 467 39.32 T 13-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 Gene3D G3DSA:3.90.1150.10 30 393 5.5E-161 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 8 404 1.6E-203 T 13-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 16 403 70.517 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 400 4.9E-151 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 Gene3D G3DSA:3.40.640.10 60 305 5.5E-161 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 Pfam PF00202 Aminotransferase class-III 26 400 2.1E-139 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 SUPERFAMILY SSF53383 19 401 4.54E-126 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 PIRSF PIRSF000521 24 157 4.2E-7 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_01840 6280906d7b98f059cc66d76fd17c5eb4 405 PIRSF PIRSF000521 174 403 5.2E-37 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_13120 86c9614487417a42e824e41320a5e6da 920 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 507 613 2.0E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_13120 86c9614487417a42e824e41320a5e6da 920 SMART SM00387 507 614 1.2E-32 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_13120 86c9614487417a42e824e41320a5e6da 920 Gene3D G3DSA:3.40.50.12740 688 880 2.0E-29 T 13-10-2018 CS348_13120 86c9614487417a42e824e41320a5e6da 920 PRINTS PR00344 Bacterial sensor protein C-terminal signature 598 611 1.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13120 86c9614487417a42e824e41320a5e6da 920 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 557 1.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13120 86c9614487417a42e824e41320a5e6da 920 PRINTS PR00344 Bacterial sensor protein C-terminal signature 561 571 1.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13120 86c9614487417a42e824e41320a5e6da 920 PRINTS PR00344 Bacterial sensor protein C-terminal signature 574 592 1.9E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SUPERFAMILY SSF158472 317 365 1.07E-5 T 13-10-2018 CS348_13120 86c9614487417a42e824e41320a5e6da 920 Pfam PF00072 Response regulator receiver domain 691 803 4.9E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SMART SM00388 395 460 2.7E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SMART SM00304 317 369 4.5E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SUPERFAMILY SSF52172 689 815 4.98E-31 T 13-10-2018 IPR011006 CheY-like superfamily CS348_13120 86c9614487417a42e824e41320a5e6da 920 Gene3D G3DSA:1.10.287.130 381 460 1.1E-20 T 13-10-2018 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SUPERFAMILY SSF47226 788 907 3.66E-6 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CS348_13120 86c9614487417a42e824e41320a5e6da 920 Pfam PF00512 His Kinase A (phospho-acceptor) domain 400 460 9.9E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_13120 86c9614487417a42e824e41320a5e6da 920 Gene3D G3DSA:1.20.1480.50 287 376 9.1E-6 T 13-10-2018 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SMART SM00448 689 804 1.5E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SUPERFAMILY SSF47384 380 461 4.12E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_13120 86c9614487417a42e824e41320a5e6da 920 SUPERFAMILY SSF55874 449 615 8.64E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_13120 86c9614487417a42e824e41320a5e6da 920 Gene3D G3DSA:3.30.565.10 461 616 2.5E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 37 505 6.0E-247 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 SUPERFAMILY SSF100950 238 504 1.98E-60 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 Gene3D G3DSA:3.40.1080.10 1 235 8.4E-116 T 13-10-2018 CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 PIRSF PIRSF009451 1 506 3.3E-267 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 40 504 1.1E-249 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 SUPERFAMILY SSF100950 6 234 1.81E-81 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_20055 45cbed90c808d7260097997ce4ed20ba 506 Gene3D G3DSA:3.40.1080.10 237 506 1.9E-126 T 13-10-2018 CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 1.1E-73 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 255 120.611 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 Gene3D G3DSA:1.10.1270.20 161 255 1.2E-40 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 PIRSF PIRSF000386 1 253 1.9E-103 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 SUPERFAMILY SSF75217 2 247 9.16E-103 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 2 234 3.1E-112 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CS348_06435 6a67f8b9f301d262f6dbfa98dc70b164 255 Gene3D G3DSA:3.40.1280.10 1 160 7.2E-68 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_06970 55c7157aa9fdab3478b05c18400e0ffa 73 Pfam PF07191 zinc-ribbons 4 68 1.4E-29 T 13-10-2018 IPR010807 Protein of unknown function DUF1407 CS348_06970 55c7157aa9fdab3478b05c18400e0ffa 73 SUPERFAMILY SSF161187 1 69 2.75E-29 T 13-10-2018 CS348_06970 55c7157aa9fdab3478b05c18400e0ffa 73 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 1 71 8.0E-36 T 13-10-2018 IPR010807 Protein of unknown function DUF1407 CS348_06970 55c7157aa9fdab3478b05c18400e0ffa 73 Gene3D G3DSA:2.10.290.10 12 72 4.1E-30 T 13-10-2018 IPR029037 YfgJ-like CS348_20845 884c3e0dc9451fddef3d61922efe3a6d 148 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 11 142 2.6E-43 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 CS348_20845 884c3e0dc9451fddef3d61922efe3a6d 148 Pfam PF00583 Acetyltransferase (GNAT) family 33 120 1.8E-16 T 13-10-2018 IPR000182 GNAT domain CS348_20845 884c3e0dc9451fddef3d61922efe3a6d 148 SUPERFAMILY SSF55729 3 146 1.99E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_20845 884c3e0dc9451fddef3d61922efe3a6d 148 Gene3D G3DSA:3.40.630.30 1 148 2.4E-47 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 SUPERFAMILY SSF51735 464 636 1.58E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Gene3D G3DSA:3.30.360.10 625 796 8.0E-119 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Gene3D G3DSA:3.30.2130.10 302 464 4.8E-47 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Pfam PF13840 ACT domain 393 453 5.5E-9 T 13-10-2018 IPR027795 CASTOR, ACT domain CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Pfam PF13840 ACT domain 314 375 3.0E-8 T 13-10-2018 IPR027795 CASTOR, ACT domain CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Gene3D G3DSA:3.40.1160.10 3 295 1.6E-83 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_20355 ea22603d2709e5591984e2492cf65b62 820 SUPERFAMILY SSF55021 383 476 2.59E-22 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Gene3D G3DSA:3.40.50.720 466 812 8.0E-119 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 SUPERFAMILY SSF55021 303 381 3.72E-23 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Pfam PF00696 Amino acid kinase family 2 284 9.4E-45 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 PIRSF PIRSF000727 1 818 0.0 T 13-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 2.3E-31 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 1.5E-150 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 SUPERFAMILY SSF53633 1 295 9.95E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Pfam PF00742 Homoserine dehydrogenase 614 811 1.4E-47 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 Gene3D G3DSA:1.20.120.1320 41 142 1.6E-83 T 13-10-2018 CS348_20355 ea22603d2709e5591984e2492cf65b62 820 SUPERFAMILY SSF55347 614 798 7.19E-51 T 13-10-2018 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 8.0E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 SUPERFAMILY SSF53822 72 339 9.42E-53 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 SUPERFAMILY SSF47413 12 70 1.03E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 13-10-2018 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 Pfam PF13377 Periplasmic binding protein-like domain 180 339 9.9E-31 T 13-10-2018 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 SMART SM00354 12 82 9.4E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 Gene3D G3DSA:3.40.50.2300 74 318 1.8E-63 T 13-10-2018 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 Gene3D G3DSA:3.40.50.2300 168 301 1.8E-63 T 13-10-2018 CS348_07915 b04c6c5154e614c5cebe6242be1fc181 339 Gene3D G3DSA:1.10.260.40 5 70 2.9E-23 T 13-10-2018 CS348_25280 89f34db5925a902a9d397436ec8ce822 133 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 19 129 1.3E-15 T 13-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III CS348_17595 4028e4010e3b8fa5a3492af7d5770a9a 131 PIRSF PIRSF002070 1 130 1.1E-20 T 13-10-2018 CS348_17595 4028e4010e3b8fa5a3492af7d5770a9a 131 SUPERFAMILY SSF50249 1 131 6.51E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_17595 4028e4010e3b8fa5a3492af7d5770a9a 131 Pfam PF00436 Single-strand binding protein family 6 99 1.2E-13 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CS348_17595 4028e4010e3b8fa5a3492af7d5770a9a 131 Gene3D G3DSA:2.40.50.140 2 127 7.2E-19 T 13-10-2018 CS348_17275 83b0dcc3b4bba79a325c7c9ff22ee820 318 Gene3D G3DSA:3.40.50.1980 146 318 1.4E-70 T 13-10-2018 CS348_17275 83b0dcc3b4bba79a325c7c9ff22ee820 318 Gene3D G3DSA:3.40.50.1980 27 145 3.9E-32 T 13-10-2018 CS348_17275 83b0dcc3b4bba79a325c7c9ff22ee820 318 Pfam PF01497 Periplasmic binding protein 49 297 6.8E-27 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CS348_17275 83b0dcc3b4bba79a325c7c9ff22ee820 318 SUPERFAMILY SSF53807 31 317 2.94E-47 T 13-10-2018 CS348_15150 a0dafbd81107d740c7d2c484dec5b77b 150 Gene3D G3DSA:1.20.1270.380 1 89 1.2E-48 T 13-10-2018 IPR038339 MatP, N-terminal domain superfamily CS348_15150 a0dafbd81107d740c7d2c484dec5b77b 150 Pfam PF06303 MatP N-terminal domain 2 85 9.5E-43 T 13-10-2018 IPR035087 MatP, N-terminal CS348_15150 a0dafbd81107d740c7d2c484dec5b77b 150 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 2.0E-62 T 13-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 CS348_15150 a0dafbd81107d740c7d2c484dec5b77b 150 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 30.475 T 13-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 CS348_15150 a0dafbd81107d740c7d2c484dec5b77b 150 Gene3D G3DSA:1.10.1220.10 98 150 1.3E-35 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CS348_15150 a0dafbd81107d740c7d2c484dec5b77b 150 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 7.9E-31 T 13-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain CS348_18735 03edf70923471d09b866ac9342744869 350 SUPERFAMILY SSF56935 21 350 1.7E-78 T 13-10-2018 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 2.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 50 68 2.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 94 116 2.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 21 37 2.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 233 250 2.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00183 E.coli/Salmonella-type porin signature 261 280 2.4E-71 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 Pfam PF00267 Gram-negative porin 26 350 2.8E-150 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 305 321 - T 13-10-2018 IPR013793 Porin, Gram-negative type, conserved site CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 227 239 4.1E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 51 62 4.1E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 305 322 4.1E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 94 104 4.1E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 4.1E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_18735 03edf70923471d09b866ac9342744869 350 Gene3D G3DSA:2.40.160.10 21 350 6.8E-156 T 13-10-2018 IPR023614 Porin domain superfamily CS348_00615 851c5158edd68ff4faceb0bcae71dc15 313 Gene3D G3DSA:3.30.370.20 1 76 4.9E-12 T 13-10-2018 CS348_00615 851c5158edd68ff4faceb0bcae71dc15 313 Pfam PF07922 Glycosyltransferase family 52 28 291 2.1E-32 T 13-10-2018 IPR012477 Glycosyltransferase family 52 CS348_17320 bd50837667e5c27444c0eae305c9706a 751 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 167 5.8E-29 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_17320 bd50837667e5c27444c0eae305c9706a 751 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 734 751 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site CS348_17320 bd50837667e5c27444c0eae305c9706a 751 Gene3D G3DSA:2.170.130.10 28 172 1.3E-45 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_17320 bd50837667e5c27444c0eae305c9706a 751 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 751 5.9E-140 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CS348_17320 bd50837667e5c27444c0eae305c9706a 751 Gene3D G3DSA:2.40.170.20 178 751 4.0E-230 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_17320 bd50837667e5c27444c0eae305c9706a 751 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 13-10-2018 IPR010916 TonB box, conserved site CS348_17320 bd50837667e5c27444c0eae305c9706a 751 SUPERFAMILY SSF56935 38 751 1.14E-136 T 13-10-2018 CS348_17320 bd50837667e5c27444c0eae305c9706a 751 Pfam PF00593 TonB dependent receptor 281 748 1.3E-58 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_18085 dd27ee635ecb157a83daeb4db4eaf2e8 566 SUPERFAMILY SSF53850 122 561 7.42E-58 T 13-10-2018 CS348_18085 dd27ee635ecb157a83daeb4db4eaf2e8 566 Gene3D G3DSA:3.40.190.10 122 308 1.5E-23 T 13-10-2018 CS348_18085 dd27ee635ecb157a83daeb4db4eaf2e8 566 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 168 303 1.0E-15 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_18085 dd27ee635ecb157a83daeb4db4eaf2e8 566 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 1.3E-36 T 13-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain CS348_21035 b179fe1f7bf9a977b5fc8787d0ddd5af 394 SUPERFAMILY SSF103473 16 388 1.83E-28 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_21035 b179fe1f7bf9a977b5fc8787d0ddd5af 394 Gene3D G3DSA:1.20.1250.20 10 200 7.6E-10 T 13-10-2018 CS348_21035 b179fe1f7bf9a977b5fc8787d0ddd5af 394 Gene3D G3DSA:1.20.1250.20 210 388 1.4E-9 T 13-10-2018 CS348_21035 b179fe1f7bf9a977b5fc8787d0ddd5af 394 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 23 380 1.4E-133 T 13-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB CS348_01555 5c797d0750462e64cc3cce60ca308251 658 Gene3D G3DSA:3.20.20.80 134 572 5.8E-189 T 13-10-2018 CS348_01555 5c797d0750462e64cc3cce60ca308251 658 Gene3D G3DSA:2.60.40.1180 573 657 2.6E-42 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_01555 5c797d0750462e64cc3cce60ca308251 658 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 3 657 72.004 T 13-10-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 CS348_01555 5c797d0750462e64cc3cce60ca308251 658 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 12 97 2.0E-19 T 13-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 CS348_01555 5c797d0750462e64cc3cce60ca308251 658 Gene3D G3DSA:2.60.40.10 1 133 3.6E-49 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_01555 5c797d0750462e64cc3cce60ca308251 658 Pfam PF00128 Alpha amylase, catalytic domain 186 354 2.7E-7 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_01555 5c797d0750462e64cc3cce60ca308251 658 SUPERFAMILY SSF81296 7 144 7.56E-45 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_01555 5c797d0750462e64cc3cce60ca308251 658 SUPERFAMILY SSF51445 130 565 4.99E-125 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_01555 5c797d0750462e64cc3cce60ca308251 658 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 633 2.0E-264 T 13-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 CS348_01555 5c797d0750462e64cc3cce60ca308251 658 SMART SM00642 130 558 9.3E-8 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 SMART SM00486 148 555 1.1E-79 T 13-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 415 428 7.0E-10 T 13-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 489 501 7.0E-10 T 13-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 541 549 7.0E-10 T 13-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Gene3D G3DSA:3.30.420.10 151 347 1.7E-81 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Gene3D G3DSA:3.90.1600.10 348 444 8.1E-30 T 13-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Gene3D G3DSA:3.90.1600.10 449 632 3.7E-57 T 13-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Pfam PF00136 DNA polymerase family B 398 735 2.5E-40 T 13-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Pfam PF03104 DNA polymerase family B, exonuclease domain 71 164 1.9E-5 T 13-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Pfam PF03104 DNA polymerase family B, exonuclease domain 195 296 3.5E-7 T 13-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Gene3D G3DSA:2.40.50.590 5 148 7.9E-61 T 13-10-2018 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 SUPERFAMILY SSF53098 3 389 7.17E-97 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Gene3D G3DSA:3.30.70.2250 40 106 7.9E-61 T 13-10-2018 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 ProSitePatterns PS00116 DNA polymerase family B signature. 543 551 - T 13-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 SUPERFAMILY SSF56672 394 783 1.95E-112 T 13-10-2018 CS348_19855 d9d400f4eb7d0b3f3fd009b2d93a7205 783 Gene3D G3DSA:1.10.132.60 639 783 1.1E-62 T 13-10-2018 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 Gene3D G3DSA:2.40.40.20 612 771 2.4E-45 T 13-10-2018 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 Pfam PF01568 Molydopterin dinucleotide binding domain 637 740 2.4E-25 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 SUPERFAMILY SSF50692 630 774 1.4E-39 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 Gene3D G3DSA:3.90.55.10 40 578 1.0E-220 T 13-10-2018 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 Gene3D G3DSA:3.40.228.10 148 604 1.0E-220 T 13-10-2018 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 13 775 0.0 T 13-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 Gene3D G3DSA:3.40.50.740 56 527 1.0E-220 T 13-10-2018 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 675 702 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 Pfam PF00384 Molybdopterin oxidoreductase 56 517 1.8E-109 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 SUPERFAMILY SSF53706 14 628 6.15E-156 T 13-10-2018 CS348_01015 b0c0cd987ab4776e4acbd19a03903ef6 777 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 459 476 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 9.9E-40 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 Gene3D G3DSA:3.30.360.10 149 314 6.8E-155 T 13-10-2018 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 PIRSF PIRSF000149 1 331 1.5E-132 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 Gene3D G3DSA:3.40.50.720 4 326 6.8E-155 T 13-10-2018 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 3.4E-72 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 SUPERFAMILY SSF55347 149 312 1.07E-82 T 13-10-2018 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.4E-46 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 1.4E-46 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 1.4E-46 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 1.4E-46 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 1.4E-46 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.1E-132 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 SUPERFAMILY SSF51735 3 166 4.08E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09620 a244eb09ba33b68440bc18a232a3cc88 331 SMART SM00846 3 150 7.0E-90 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_05590 515861d3eb2714e38178e645763f7f3c 165 Gene3D G3DSA:1.25.40.10 7 155 4.0E-57 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_05590 515861d3eb2714e38178e645763f7f3c 165 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 21 150 4.4E-38 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_05590 515861d3eb2714e38178e645763f7f3c 165 PIRSF PIRSF003165 1 162 3.2E-64 T 13-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup CS348_05590 515861d3eb2714e38178e645763f7f3c 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 48 67 3.7E-11 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_05590 515861d3eb2714e38178e645763f7f3c 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 72 94 3.7E-11 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_05590 515861d3eb2714e38178e645763f7f3c 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 23 46 3.7E-11 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_05590 515861d3eb2714e38178e645763f7f3c 165 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 104 126 3.7E-11 T 13-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD CS348_05590 515861d3eb2714e38178e645763f7f3c 165 Pfam PF07720 Tetratricopeptide repeat 71 104 6.9E-12 T 13-10-2018 IPR011716 Tetratricopeptide TPR-3 CS348_05590 515861d3eb2714e38178e645763f7f3c 165 Pfam PF07720 Tetratricopeptide repeat 37 70 4.3E-13 T 13-10-2018 IPR011716 Tetratricopeptide TPR-3 CS348_05590 515861d3eb2714e38178e645763f7f3c 165 SUPERFAMILY SSF48452 36 137 6.32E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 SUPERFAMILY SSF48179 284 488 1.53E-67 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 219 231 - T 13-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 Gene3D G3DSA:1.10.1040.10 283 490 1.8E-78 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 Gene3D G3DSA:3.40.50.720 7 282 2.0E-108 T 13-10-2018 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 SUPERFAMILY SSF51735 5 282 3.58E-95 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 PRINTS PR00084 Mannitol dehydrogenase signature 180 193 2.6E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 PRINTS PR00084 Mannitol dehydrogenase signature 219 232 2.6E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 PRINTS PR00084 Mannitol dehydrogenase signature 26 36 2.6E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 PRINTS PR00084 Mannitol dehydrogenase signature 249 264 2.6E-20 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 25 189 2.1E-51 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_03610 2c35dae6b649ef228b45d12c664bd4df 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 217 465 6.7E-95 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 CS348_16185 9a81fb9c427a291a33a5560374d871aa 219 Gene3D G3DSA:1.10.3720.10 1 217 8.8E-57 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16185 9a81fb9c427a291a33a5560374d871aa 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 111 4.0E-31 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_16185 9a81fb9c427a291a33a5560374d871aa 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 1.9E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16185 9a81fb9c427a291a33a5560374d871aa 219 SUPERFAMILY SSF161098 13 202 2.62E-45 T 13-10-2018 IPR035906 MetI-like superfamily CS348_20285 a6a2bfb66a43294c47d19ea8ea0c3482 177 Gene3D G3DSA:1.20.141.10 1 177 2.6E-39 T 13-10-2018 CS348_20285 a6a2bfb66a43294c47d19ea8ea0c3482 177 Pfam PF09374 Predicted Peptidoglycan domain 91 176 2.6E-31 T 13-10-2018 IPR018537 Peptidoglycan binding domain CS348_20285 a6a2bfb66a43294c47d19ea8ea0c3482 177 SUPERFAMILY SSF53955 2 176 6.19E-44 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_20285 a6a2bfb66a43294c47d19ea8ea0c3482 177 Pfam PF05838 Glycosyl hydrolase 108 7 88 6.8E-23 T 13-10-2018 IPR008565 Protein of unknown function DUF847 CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 TIGRFAM TIGR00618 sbcc: exonuclease SbcC 1 1038 8.9E-297 T 13-10-2018 IPR004592 Nuclease SbcC, gammaproteobacteria type CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 Pfam PF13558 Putative exonuclease SbcCD, C subunit 930 1000 1.1E-14 T 13-10-2018 CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 Gene3D G3DSA:3.40.50.300 818 1040 1.5E-26 T 13-10-2018 CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 SUPERFAMILY SSF52540 1 281 8.15E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 Gene3D G3DSA:3.40.50.300 1 405 2.2E-47 T 13-10-2018 CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 Pfam PF13476 AAA domain 5 227 1.2E-25 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain CS348_18390 77184b2a7e286cb156186b663d5f0134 1046 SUPERFAMILY SSF52540 826 1018 7.73E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_07250 3594e889af2d437a26df978888edf51d 338 PIRSF PIRSF000428 1 327 1.9E-109 T 13-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07250 3594e889af2d437a26df978888edf51d 338 Pfam PF01515 Phosphate acetyl/butaryl transferase 2 320 1.0E-118 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07250 3594e889af2d437a26df978888edf51d 338 Gene3D G3DSA:3.40.50.10950 14 319 7.9E-122 T 13-10-2018 CS348_07250 3594e889af2d437a26df978888edf51d 338 Gene3D G3DSA:3.40.50.10750 140 296 7.9E-122 T 13-10-2018 CS348_07250 3594e889af2d437a26df978888edf51d 338 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 17 319 3.7E-99 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CS348_07250 3594e889af2d437a26df978888edf51d 338 SUPERFAMILY SSF53659 2 321 9.46E-81 T 13-10-2018 CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 SMART SM00862 147 223 4.0E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 223 9.6E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 Gene3D G3DSA:3.40.50.2300 1 119 2.1E-35 T 13-10-2018 CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 Gene3D G3DSA:1.10.10.10 120 224 1.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 Pfam PF00072 Response regulator receiver domain 4 112 2.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 SMART SM00448 2 112 1.7E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_16750 f6f4364e1eda59d52391a934f4d229ed 225 SUPERFAMILY SSF52172 3 176 5.41E-39 T 13-10-2018 IPR011006 CheY-like superfamily CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 Hamap MF_00577 Urocanate hydratase [hutU]. 2 555 49.578 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 SUPERFAMILY SSF111326 8 554 1.57E-258 T 13-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 Gene3D G3DSA:3.40.1770.10 17 541 4.6E-259 T 13-10-2018 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 ProSitePatterns PS01233 Urocanase signature. 441 456 - T 13-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 Pfam PF01175 Urocanase Rossmann-like domain 140 348 6.0E-86 T 13-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 Gene3D G3DSA:3.40.50.10730 141 348 4.6E-259 T 13-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 TIGRFAM TIGR01228 hutU: urocanate hydratase 9 553 4.0E-300 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 PIRSF PIRSF001423 1 560 4.1E-293 T 13-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 Pfam PF17391 Urocanase N-terminal domain 11 137 1.8E-61 T 13-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16385 25de35d5d0f742e9aef76265561fe41a 561 Pfam PF17392 Urocanase C-terminal domain 351 544 2.5E-92 T 13-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 CS348_16080 842c656fe2adee653a6269798b265407 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 25 78 1.0E-13 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CS348_16080 842c656fe2adee653a6269798b265407 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 302 1.2E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16080 842c656fe2adee653a6269798b265407 303 Gene3D G3DSA:1.10.3720.10 93 298 3.1E-22 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16080 842c656fe2adee653a6269798b265407 303 SUPERFAMILY SSF161098 96 283 2.88E-28 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16840 db5f25e3bdd121a38e336c2165c3fe52 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 13-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 CS348_16840 db5f25e3bdd121a38e336c2165c3fe52 266 Gene3D G3DSA:3.40.50.1360 1 266 9.9E-121 T 13-10-2018 CS348_16840 db5f25e3bdd121a38e336c2165c3fe52 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 8 230 2.5E-21 T 13-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 CS348_16840 db5f25e3bdd121a38e336c2165c3fe52 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 41.309 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 CS348_16840 db5f25e3bdd121a38e336c2165c3fe52 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 4.2E-143 T 13-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 CS348_16840 db5f25e3bdd121a38e336c2165c3fe52 266 SUPERFAMILY SSF100950 1 263 1.05E-105 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_17230 e743e5b554b51c49babcbab098b41e32 386 Gene3D G3DSA:3.40.640.10 45 284 6.0E-140 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_17230 e743e5b554b51c49babcbab098b41e32 386 Gene3D G3DSA:3.90.1150.10 20 383 6.0E-140 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_17230 e743e5b554b51c49babcbab098b41e32 386 Pfam PF00155 Aminotransferase class I and II 32 383 9.6E-59 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_17230 e743e5b554b51c49babcbab098b41e32 386 SUPERFAMILY SSF53383 10 385 5.85E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_06665 4719179d89670062ed66cd2879402204 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 3.2E-39 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CS348_06665 4719179d89670062ed66cd2879402204 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.422 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CS348_06665 4719179d89670062ed66cd2879402204 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 121 1.3E-23 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_06665 4719179d89670062ed66cd2879402204 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 87 4.0E-40 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CS348_06665 4719179d89670062ed66cd2879402204 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 5.7E-59 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CS348_06665 4719179d89670062ed66cd2879402204 126 Gene3D G3DSA:3.90.470.20 1 126 2.5E-37 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_06665 4719179d89670062ed66cd2879402204 126 SUPERFAMILY SSF56214 3 125 1.27E-29 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 7 89 7.6E-39 T 13-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 SMART SM00830 11 91 1.4E-25 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 Gene3D G3DSA:1.20.59.10 1 107 9.3E-37 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 Gene3D G3DSA:3.40.190.10 108 281 9.1E-54 T 13-10-2018 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 325 332 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 Pfam PF00800 Prephenate dehydratase 106 286 2.0E-59 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 SUPERFAMILY SSF53850 105 291 1.95E-53 T 13-10-2018 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 PIRSF PIRSF001500 1 380 1.7E-141 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 SUPERFAMILY SSF48600 6 93 2.01E-22 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 Gene3D G3DSA:3.30.70.260 291 379 7.5E-23 T 13-10-2018 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 Pfam PF01817 Chorismate mutase type II 11 89 2.4E-16 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 Gene3D G3DSA:3.40.190.10 189 274 9.1E-54 T 13-10-2018 CS348_06470 9fc44d719df9e0595620cedb6ca3f259 386 SUPERFAMILY SSF55021 280 377 3.05E-22 T 13-10-2018 CS348_19160 ea8e15dd51455efe7ae3f3dab6a0037d 151 Pfam PF07977 FabA-like domain 17 141 2.8E-40 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_19160 ea8e15dd51455efe7ae3f3dab6a0037d 151 SUPERFAMILY SSF54637 10 149 1.01E-50 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_19160 ea8e15dd51455efe7ae3f3dab6a0037d 151 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 2.8E-60 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_19160 ea8e15dd51455efe7ae3f3dab6a0037d 151 Gene3D G3DSA:3.10.129.10 5 148 3.8E-66 T 13-10-2018 CS348_19160 ea8e15dd51455efe7ae3f3dab6a0037d 151 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.474 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Pfam PF01966 HD domain 231 328 3.7E-12 T 13-10-2018 IPR006674 HD domain CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 150 212 9.8E-15 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Pfam PF01743 Poly A polymerase head domain 3 122 1.0E-17 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 46.44 T 13-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 SUPERFAMILY SSF81301 2 119 1.2E-31 T 13-10-2018 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Gene3D G3DSA:3.30.460.10 1 121 1.2E-29 T 13-10-2018 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 PIRSF PIRSF000813 1 408 7.7E-207 T 13-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Gene3D G3DSA:1.10.3090.10 122 407 2.1E-43 T 13-10-2018 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 SUPERFAMILY SSF81891 120 403 1.07E-56 T 13-10-2018 CS348_03215 3249a58e10829f33c19f620fe54a752d 413 SMART SM00471 224 359 0.0079 T 13-10-2018 IPR003607 HD/PDEase domain CS348_03215 3249a58e10829f33c19f620fe54a752d 413 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 54.43 T 13-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 CS348_15135 365d14e4a5be1b62774d3dd6799d2d3e 201 Gene3D G3DSA:1.10.150.20 114 200 3.1E-22 T 13-10-2018 CS348_15135 365d14e4a5be1b62774d3dd6799d2d3e 201 Gene3D G3DSA:3.30.1460.30 6 108 4.1E-25 T 13-10-2018 CS348_15135 365d14e4a5be1b62774d3dd6799d2d3e 201 SUPERFAMILY SSF159894 13 107 6.8E-27 T 13-10-2018 CS348_15135 365d14e4a5be1b62774d3dd6799d2d3e 201 Pfam PF04993 TfoX N-terminal domain 14 106 1.1E-24 T 13-10-2018 IPR007076 TfoX, N-terminal CS348_15135 365d14e4a5be1b62774d3dd6799d2d3e 201 Pfam PF04994 TfoX C-terminal domain 116 194 5.9E-27 T 13-10-2018 IPR007077 TfoX, C-terminal CS348_15135 365d14e4a5be1b62774d3dd6799d2d3e 201 PIRSF PIRSF028788 1 200 1.8E-53 T 13-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type CS348_20010 ad6517c584e0f806e3cc1d2fd6c8f968 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 CS348_20010 ad6517c584e0f806e3cc1d2fd6c8f968 261 Gene3D G3DSA:1.10.12.10 200 261 2.7E-23 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal CS348_20010 ad6517c584e0f806e3cc1d2fd6c8f968 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 260 6.2E-84 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CS348_20010 ad6517c584e0f806e3cc1d2fd6c8f968 261 Hamap MF_01051 Carnitinyl-CoA dehydratase [caiD]. 1 261 70.093 T 13-10-2018 IPR022852 Carnitinyl-CoA dehydratase GO:0016836 CS348_20010 ad6517c584e0f806e3cc1d2fd6c8f968 261 SUPERFAMILY SSF52096 2 261 1.41E-79 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_20010 ad6517c584e0f806e3cc1d2fd6c8f968 261 Gene3D G3DSA:3.90.226.10 1 198 4.2E-67 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 2.4E-24 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 2.4E-24 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 2.4E-24 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 2.4E-24 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 SUPERFAMILY SSF51621 419 715 9.67E-97 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Gene3D G3DSA:3.30.450.40 1 162 1.1E-44 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Gene3D G3DSA:3.50.30.10 175 399 4.1E-54 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 SMART SM00065 17 164 8.4E-28 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 1.8E-22 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 176 729 6.8E-126 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Pfam PF01590 GAF domain 18 152 6.5E-15 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 SUPERFAMILY SSF55781 2 158 1.77E-29 T 13-10-2018 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 SUPERFAMILY SSF52009 293 413 7.06E-25 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 1.2E-15 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 420 707 3.2E-109 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Gene3D G3DSA:1.10.274.10 190 313 4.1E-54 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 SUPERFAMILY SSF47831 198 309 2.88E-25 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CS348_04980 e7b8c15a42535ea01d6a0d775733cd8a 748 Gene3D G3DSA:3.20.20.60 400 741 5.8E-104 T 13-10-2018 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 SUPERFAMILY SSF52540 276 525 9.06E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 SUPERFAMILY SSF52540 5 256 7.99E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 526 0.36 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 265 1.2E-4 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 Gene3D G3DSA:3.40.50.300 3 269 1.6E-80 T 13-10-2018 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 Gene3D G3DSA:3.40.50.300 273 529 1.0E-83 T 13-10-2018 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 SMART SM00382 311 502 1.3E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 SMART SM00382 34 236 9.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 Pfam PF00005 ABC transporter 302 454 4.0E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_08515 5959e199938529c61f19e2ce9754d6d9 529 Pfam PF00005 ABC transporter 26 184 4.7E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_03200 7b54cc21dc210d57b10c10d489fa1044 205 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 4.2E-50 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CS348_03200 7b54cc21dc210d57b10c10d489fa1044 205 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 195 5.6E-83 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CS348_03200 7b54cc21dc210d57b10c10d489fa1044 205 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.481 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CS348_03200 7b54cc21dc210d57b10c10d489fa1044 205 SMART SM01207 10 185 7.6E-86 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 CS348_04625 6a4c1913493a5aba6589f10e5c68cd5d 211 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 39.911 T 13-10-2018 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 CS348_04625 6a4c1913493a5aba6589f10e5c68cd5d 211 Pfam PF01810 LysE type translocator 14 201 2.0E-55 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_04625 6a4c1913493a5aba6589f10e5c68cd5d 211 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 1.3E-71 T 13-10-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 CS348_14670 43523182bd4d9c96b22ca448cbcb8a22 191 Hamap MF_00780 Protein YceI [yceI]. 1 191 47.415 T 13-10-2018 IPR023480 Uncharacterised protein family UPF0312/YceI CS348_14670 43523182bd4d9c96b22ca448cbcb8a22 191 Pfam PF04264 YceI-like domain 25 186 5.5E-43 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CS348_14670 43523182bd4d9c96b22ca448cbcb8a22 191 SMART SM00867 24 188 1.1E-73 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CS348_14670 43523182bd4d9c96b22ca448cbcb8a22 191 Gene3D G3DSA:2.40.128.110 23 191 2.4E-59 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CS348_14670 43523182bd4d9c96b22ca448cbcb8a22 191 SUPERFAMILY SSF101874 22 190 2.49E-57 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CS348_08035 77a422d08189065b76b8c3902627f415 910 SUPERFAMILY SSF54292 3 79 5.52E-19 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_08035 77a422d08189065b76b8c3902627f415 910 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 90 126 1.1E-14 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 105 117 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 152 162 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 223 276 8.2E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 SUPERFAMILY SSF53706 221 690 1.76E-84 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 Gene3D G3DSA:2.40.40.20 812 904 6.6E-10 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 Pfam PF01568 Molydopterin dinucleotide binding domain 830 892 5.1E-8 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_08035 77a422d08189065b76b8c3902627f415 910 Gene3D G3DSA:3.10.20.740 3 129 2.9E-29 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 33 50 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 SMART SM00929 90 130 1.9E-19 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 SUPERFAMILY SSF54862 83 215 2.97E-34 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 Gene3D G3DSA:2.20.25.90 223 276 5.1E-13 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 Gene3D G3DSA:3.40.50.740 476 692 1.6E-14 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 5 80 1.1E-11 T 13-10-2018 CS348_08035 77a422d08189065b76b8c3902627f415 910 Pfam PF00384 Molybdopterin oxidoreductase 566 640 1.1E-7 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 SMART SM00926 223 277 7.0E-10 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08035 77a422d08189065b76b8c3902627f415 910 SUPERFAMILY SSF50692 816 893 1.88E-14 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_08035 77a422d08189065b76b8c3902627f415 910 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 6 657 2.2E-205 T 13-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_03580 44f2d0ead0d889fe6a7ddfe983aeea24 350 Gene3D G3DSA:3.40.50.1980 24 187 1.2E-44 T 13-10-2018 CS348_03580 44f2d0ead0d889fe6a7ddfe983aeea24 350 SUPERFAMILY SSF53807 25 325 2.32E-57 T 13-10-2018 CS348_03580 44f2d0ead0d889fe6a7ddfe983aeea24 350 Gene3D G3DSA:3.40.50.1980 190 348 2.2E-60 T 13-10-2018 CS348_03580 44f2d0ead0d889fe6a7ddfe983aeea24 350 Pfam PF01497 Periplasmic binding protein 44 297 4.3E-31 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CS348_23890 eb7ba14984f619529bf8f611fab9b5c0 443 Pfam PF00557 Metallopeptidase family M24 168 430 1.9E-45 T 13-10-2018 IPR000994 Peptidase M24 CS348_23890 eb7ba14984f619529bf8f611fab9b5c0 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CS348_23890 eb7ba14984f619529bf8f611fab9b5c0 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 58.134 T 13-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 CS348_23890 eb7ba14984f619529bf8f611fab9b5c0 443 SUPERFAMILY SSF55920 163 438 6.93E-57 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CS348_23890 eb7ba14984f619529bf8f611fab9b5c0 443 Gene3D G3DSA:3.40.350.10 1 159 3.7E-62 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CS348_23890 eb7ba14984f619529bf8f611fab9b5c0 443 Gene3D G3DSA:3.90.230.10 161 443 1.7E-83 T 13-10-2018 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 Pfam PF02253 Phospholipase A1 43 285 3.4E-89 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 SUPERFAMILY SSF56931 39 288 3.14E-91 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 Gene3D G3DSA:2.40.230.10 33 289 1.6E-107 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 258 278 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 203 221 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_24020 4ef48f4eeb3c8ebb31d3bc72182aef05 289 PRINTS PR01486 Bacterial phospholipase A1 protein signature 236 253 1.6E-87 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CS348_04025 f15733aa1d5edf9fb7f9c7153a8fb902 141 TIGRFAM TIGR03751 conj_TIGR03751: conjugative transfer region lipoprotein, TIGR03751 family 16 138 1.1E-50 T 13-10-2018 IPR022262 Lipoprotein, putative CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 2.1E-106 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 Gene3D G3DSA:3.90.76.10 50 210 2.9E-202 T 13-10-2018 CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 Gene3D G3DSA:3.40.190.10 211 523 2.9E-202 T 13-10-2018 CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 SUPERFAMILY SSF53850 29 534 1.2E-162 T 13-10-2018 CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 13-10-2018 IPR023765 Solute-binding protein family 5, conserved site CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 Gene3D G3DSA:3.10.105.10 292 510 2.9E-202 T 13-10-2018 CS348_01070 c2d5b495671c7b4e03b2727f18fa9767 535 PIRSF PIRSF002741 21 535 2.0E-120 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 314 340 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 78 92 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 127 143 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 158 172 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 269 288 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 51 72 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 219 238 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 181 200 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 35 51 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 94 107 2.0E-74 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 SUPERFAMILY SSF53850 29 369 8.51E-104 T 13-10-2018 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 Pfam PF13416 Bacterial extracellular solute-binding protein 46 335 6.6E-33 T 13-10-2018 IPR006059 Bacterial extracellular solute-binding protein CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 PIRSF PIRSF019574 1 370 4.2E-143 T 13-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 Gene3D G3DSA:3.40.190.10 136 364 8.1E-143 T 13-10-2018 CS348_15930 544bab9f64e3b76a84bd195aa3beb5c6 370 Gene3D G3DSA:3.40.190.10 32 338 8.1E-143 T 13-10-2018 CS348_19345 b48cbb2d3ff4d83b21c8f7a8b1c0e975 176 Gene3D G3DSA:3.90.1140.10 1 175 1.5E-52 T 13-10-2018 CS348_19345 b48cbb2d3ff4d83b21c8f7a8b1c0e975 176 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 174 21.355 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 CS348_19345 b48cbb2d3ff4d83b21c8f7a8b1c0e975 176 SUPERFAMILY SSF55144 5 175 1.26E-44 T 13-10-2018 IPR009097 Cyclic phosphodiesterase CS348_19345 b48cbb2d3ff4d83b21c8f7a8b1c0e975 176 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 174 3.5E-39 T 13-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 CS348_19345 b48cbb2d3ff4d83b21c8f7a8b1c0e975 176 Pfam PF02834 LigT like Phosphoesterase 93 135 2.1E-7 T 13-10-2018 IPR014051 Phosphoesterase, HXTX CS348_19345 b48cbb2d3ff4d83b21c8f7a8b1c0e975 176 Pfam PF02834 LigT like Phosphoesterase 11 89 6.9E-13 T 13-10-2018 IPR014051 Phosphoesterase, HXTX CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 63 466 4.4E-63 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 2 549 0.0 T 13-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 1 549 59.388 T 13-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 Pfam PF00474 Sodium:solute symporter family 63 468 2.2E-137 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 178 203 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 Gene3D G3DSA:1.20.1730.10 50 546 1.3E-63 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CS348_22315 a5cb8d9b6f8edc799325a870106ce31f 549 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 450 470 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site CS348_02785 40558076229b4fcba7f94a8ae8a302e9 354 Gene3D G3DSA:2.30.320.10 136 349 1.2E-7 T 13-10-2018 IPR035948 YwqG-like superfamily CS348_02785 40558076229b4fcba7f94a8ae8a302e9 354 Pfam PF09234 Domain of unknown function (DUF1963) 52 349 6.9E-31 T 13-10-2018 IPR015315 Protein of unknown function DUF1963 CS348_02785 40558076229b4fcba7f94a8ae8a302e9 354 SUPERFAMILY SSF103032 15 352 2.75E-45 T 13-10-2018 IPR035948 YwqG-like superfamily CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 Gene3D G3DSA:2.40.30.10 5 102 7.7E-20 T 13-10-2018 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 Gene3D G3DSA:3.40.50.80 106 230 2.0E-20 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 PRINTS PR00409 Phthalate dioxygenase reductase family signature 115 134 2.1E-6 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 PRINTS PR00409 Phthalate dioxygenase reductase family signature 197 205 2.1E-6 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 PRINTS PR00409 Phthalate dioxygenase reductase family signature 55 69 2.1E-6 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 Gene3D G3DSA:3.10.20.30 231 322 6.9E-23 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 SUPERFAMILY SSF52343 95 220 3.93E-25 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 Pfam PF00175 Oxidoreductase NAD-binding domain 116 211 5.6E-8 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 SUPERFAMILY SSF63380 9 105 3.74E-21 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 Pfam PF00970 Oxidoreductase FAD-binding domain 36 104 2.1E-7 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 SUPERFAMILY SSF54292 221 321 4.98E-24 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_15530 7195ee945bd70958e11234e581ae4ca0 322 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 248 315 1.3E-13 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 Gene3D G3DSA:3.90.1310.10 64 248 1.3E-50 T 13-10-2018 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 612 9.7E-238 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 SUPERFAMILY SSF56519 56 253 1.44E-53 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 SUPERFAMILY SSF56601 254 611 4.05E-90 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 616 53.026 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 Gene3D G3DSA:3.40.710.10 249 621 1.2E-91 T 13-10-2018 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 Gene3D G3DSA:3.30.1390.30 85 160 1.3E-50 T 13-10-2018 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 609 1.2E-88 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_17025 60c8b91b294f7f2d971179a1496692d7 633 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 239 1.2E-45 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 Gene3D G3DSA:2.60.40.10 32 155 2.8E-32 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 108 125 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 233 4.2E-10 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 PRINTS PR00969 Pili chaperone signature 109 126 5.0E-24 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 PRINTS PR00969 Pili chaperone signature 136 151 5.0E-24 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 PRINTS PR00969 Pili chaperone signature 31 40 5.0E-24 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 PRINTS PR00969 Pili chaperone signature 80 101 5.0E-24 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 PRINTS PR00969 Pili chaperone signature 171 186 5.0E-24 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 SUPERFAMILY SSF49584 149 237 9.03E-17 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 SUPERFAMILY SSF49354 27 154 2.2E-33 T 13-10-2018 IPR008962 PapD-like superfamily CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 31 155 7.2E-37 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_18710 89a251bce8a9dc829a73653cb3a05f9f 252 Gene3D G3DSA:2.60.40.10 156 236 3.7E-14 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_02690 a190e7a17c9a6136e33fc39dceb217f8 98 Gene3D G3DSA:3.30.750.24 4 97 1.7E-10 T 13-10-2018 IPR036513 STAS domain superfamily CS348_02690 a190e7a17c9a6136e33fc39dceb217f8 98 SUPERFAMILY SSF52091 1 91 6.28E-14 T 13-10-2018 IPR036513 STAS domain superfamily CS348_02690 a190e7a17c9a6136e33fc39dceb217f8 98 Pfam PF13466 STAS domain 14 90 3.3E-18 T 13-10-2018 IPR002645 STAS domain CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 Gene3D G3DSA:3.30.980.40 856 960 5.8E-35 T 13-10-2018 CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 SUPERFAMILY SSF52540 938 1250 3.32E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 Pfam PF01580 FtsK/SpoIIIE family 964 1177 7.1E-75 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 Pfam PF09397 Ftsk gamma domain 1280 1340 1.5E-27 T 13-10-2018 IPR018541 FtsK gamma domain CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 SUPERFAMILY SSF46785 1278 1342 3.13E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 3.6E-41 T 13-10-2018 IPR025199 DNA translocase FtsK, 4TM region CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 Gene3D G3DSA:3.40.50.300 961 1263 2.8E-124 T 13-10-2018 CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 SMART SM00843 1278 1343 8.4E-41 T 13-10-2018 IPR018541 FtsK gamma domain CS348_15415 bbd668a7d1e183141e685ad64fd16d8c 1345 Gene3D G3DSA:1.10.10.10 1282 1345 2.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01625 59a7bc170aa367499ff170e551ffc3bb 256 SUPERFAMILY SSF53474 3 250 3.78E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_01625 59a7bc170aa367499ff170e551ffc3bb 256 Gene3D G3DSA:3.40.50.1820 1 255 2.2E-77 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_01625 59a7bc170aa367499ff170e551ffc3bb 256 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 252 2.6E-111 T 13-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 CS348_01625 59a7bc170aa367499ff170e551ffc3bb 256 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 46.324 T 13-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 CS348_01625 59a7bc170aa367499ff170e551ffc3bb 256 Pfam PF00561 alpha/beta hydrolase fold 15 242 2.7E-26 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CS348_19395 49f2238cb49e49792b39c3fde2f043ac 202 Gene3D G3DSA:2.60.40.1090 33 201 2.7E-12 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_19395 49f2238cb49e49792b39c3fde2f043ac 202 SUPERFAMILY SSF49401 35 202 3.88E-11 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 1 103 3.9E-38 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 13-10-2018 IPR027486 Ribosomal protein S10 domain CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 13-10-2018 IPR027486 Ribosomal protein S10 domain CS348_02005 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 348 5.5E-112 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 Gene3D G3DSA:3.40.50.2000 162 319 2.0E-126 T 13-10-2018 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 Gene3D G3DSA:3.40.50.2000 9 161 2.0E-126 T 13-10-2018 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 SUPERFAMILY SSF53756 6 353 3.53E-130 T 13-10-2018 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 5.5E-48 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 343 4.0E-36 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CS348_19695 224dd2378c9a0bc4fee1b3d90d675e14 355 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 34.737 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_20545 d66d2d1b4315f76a0f1956d4e5877f3a 170 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 109 1.3E-18 T 13-10-2018 IPR006531 Gp5 N-terminal CS348_20545 d66d2d1b4315f76a0f1956d4e5877f3a 170 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 1 170 2.1E-44 T 13-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 CS348_20545 d66d2d1b4315f76a0f1956d4e5877f3a 170 Gene3D G3DSA:2.40.50.230 2 79 4.5E-19 T 13-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily CS348_20545 d66d2d1b4315f76a0f1956d4e5877f3a 170 Gene3D G3DSA:2.60.220.40 81 150 3.2E-7 T 13-10-2018 CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 SUPERFAMILY SSF89919 2 107 1.44E-35 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 113 28.132 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 Pfam PF02033 Ribosome-binding factor A 7 112 4.0E-33 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 119 9.2E-46 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 100 8.0E-48 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CS348_02815 f426986d0a922451c8f62bdad0cea12e 133 Gene3D G3DSA:3.30.300.20 1 108 8.1E-44 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 Gene3D G3DSA:3.90.700.10 246 350 1.5E-173 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 SUPERFAMILY SSF46977 452 588 6.93E-47 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 6.9E-242 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 Pfam PF00890 FAD binding domain 9 405 9.2E-118 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 SUPERFAMILY SSF56425 236 356 4.64E-42 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 Gene3D G3DSA:1.20.58.100 431 547 1.2E-40 T 13-10-2018 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 1.9E-277 T 13-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 7.4E-5 T 13-10-2018 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.4E-5 T 13-10-2018 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 Gene3D G3DSA:4.10.80.40 548 588 1.8E-27 T 13-10-2018 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 6.5E-36 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 PIRSF PIRSF000171 1 579 9.3E-47 T 13-10-2018 CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 SUPERFAMILY SSF51905 4 443 4.49E-75 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16645 8bea9bd461963c8633147474cb31ceeb 588 Gene3D G3DSA:3.50.50.60 9 416 1.5E-173 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_00220 6ceabf87ef5f8c647928df45b08da579 96 Pfam PF13710 ACT domain 18 78 2.7E-9 T 13-10-2018 CS348_00220 6ceabf87ef5f8c647928df45b08da579 96 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 15 78 7.0E-15 T 13-10-2018 CS348_00220 6ceabf87ef5f8c647928df45b08da579 96 Gene3D G3DSA:3.30.70.260 1 96 1.9E-38 T 13-10-2018 CS348_00220 6ceabf87ef5f8c647928df45b08da579 96 SUPERFAMILY SSF55021 9 80 3.31E-16 T 13-10-2018 CS348_05040 9644018c926e33d72534292cabed327d 443 Gene3D G3DSA:3.40.1160.10 8 293 1.6E-84 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_05040 9644018c926e33d72534292cabed327d 443 Pfam PF00696 Amino acid kinase family 26 268 9.5E-31 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_05040 9644018c926e33d72534292cabed327d 443 PIRSF PIRSF000423 1 442 1.4E-207 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 CS348_05040 9644018c926e33d72534292cabed327d 443 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 9 442 2.1E-196 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 CS348_05040 9644018c926e33d72534292cabed327d 443 Pfam PF00583 Acetyltransferase (GNAT) family 337 413 4.3E-6 T 13-10-2018 IPR000182 GNAT domain CS348_05040 9644018c926e33d72534292cabed327d 443 Gene3D G3DSA:3.40.630.30 294 442 6.0E-39 T 13-10-2018 CS348_05040 9644018c926e33d72534292cabed327d 443 SUPERFAMILY SSF53633 5 291 1.54E-67 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_05040 9644018c926e33d72534292cabed327d 443 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 442 233.29 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 CS348_05040 9644018c926e33d72534292cabed327d 443 SUPERFAMILY SSF55729 252 418 3.6E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 Pfam PF00149 Calcineurin-like phosphoesterase 35 254 1.2E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 Gene3D G3DSA:3.90.780.10 363 549 1.8E-66 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 SUPERFAMILY SSF56300 27 360 1.4E-93 T 13-10-2018 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 PRINTS PR01607 Apyrase family signature 32 50 1.4E-63 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 PRINTS PR01607 Apyrase family signature 207 224 1.4E-63 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 PRINTS PR01607 Apyrase family signature 417 440 1.4E-63 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 PRINTS PR01607 Apyrase family signature 283 303 1.4E-63 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 PRINTS PR01607 Apyrase family signature 484 503 1.4E-63 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 PRINTS PR01607 Apyrase family signature 238 261 1.4E-63 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 Gene3D G3DSA:3.60.21.10 26 362 9.2E-135 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 SUPERFAMILY SSF55816 363 541 9.94E-52 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 507 1.1E-31 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_17885 26ce015ce81d693a0830408a52d80ba4 550 ProSitePatterns PS00785 5'-nucleotidase signature 1. 34 46 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_13295 d9833499719fbdb98b047c91b4421f96 531 PIRSF PIRSF000858 10 530 1.0E-206 T 13-10-2018 IPR014388 3-oxoacid CoA-transferase GO:0008410|GO:0046952 Reactome: R-HSA-77108 CS348_13295 d9833499719fbdb98b047c91b4421f96 531 Gene3D G3DSA:3.40.1080.10 283 531 4.3E-106 T 13-10-2018 CS348_13295 d9833499719fbdb98b047c91b4421f96 531 Pfam PF01144 Coenzyme A transferase 16 252 1.6E-54 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 CS348_13295 d9833499719fbdb98b047c91b4421f96 531 Gene3D G3DSA:3.40.1080.10 1 276 6.5E-110 T 13-10-2018 CS348_13295 d9833499719fbdb98b047c91b4421f96 531 SUPERFAMILY SSF100950 15 264 1.75E-78 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_13295 d9833499719fbdb98b047c91b4421f96 531 SMART SM00882 15 253 3.6E-48 T 13-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 CS348_13295 d9833499719fbdb98b047c91b4421f96 531 SUPERFAMILY SSF100950 284 524 7.54E-67 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_20465 63eefa78691953c99a517324d8be5cbe 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_20465 63eefa78691953c99a517324d8be5cbe 555 Pfam PF00005 ABC transporter 340 473 5.2E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_20465 63eefa78691953c99a517324d8be5cbe 555 SMART SM00382 348 522 6.0E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20465 63eefa78691953c99a517324d8be5cbe 555 SMART SM00382 31 236 1.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20465 63eefa78691953c99a517324d8be5cbe 555 Gene3D G3DSA:3.40.50.300 1 285 2.6E-92 T 13-10-2018 CS348_20465 63eefa78691953c99a517324d8be5cbe 555 SUPERFAMILY SSF52540 11 243 3.16E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20465 63eefa78691953c99a517324d8be5cbe 555 SUPERFAMILY SSF52540 302 526 6.01E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20465 63eefa78691953c99a517324d8be5cbe 555 Gene3D G3DSA:3.40.50.300 286 555 3.6E-80 T 13-10-2018 CS348_20465 63eefa78691953c99a517324d8be5cbe 555 Pfam PF00005 ABC transporter 22 191 1.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_20465 63eefa78691953c99a517324d8be5cbe 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 4.4E-296 T 13-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 CS348_20465 63eefa78691953c99a517324d8be5cbe 555 Pfam PF12848 ABC transporter 230 306 3.6E-12 T 13-10-2018 IPR032781 ABC-transporter extension domain CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 3.3E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 3.3E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 2.9E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 Pfam PF07729 FCD domain 89 208 4.6E-24 T 13-10-2018 IPR011711 GntR, C-terminal CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 SMART SM00895 85 209 1.5E-16 T 13-10-2018 IPR011711 GntR, C-terminal CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 SUPERFAMILY SSF48008 83 212 1.33E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 SUPERFAMILY SSF46785 7 102 1.69E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 SMART SM00345 17 75 1.1E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 Gene3D G3DSA:1.10.10.10 4 76 9.2E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12490 fd37dda2f43762abf23ed531cd0ca359 228 Gene3D G3DSA:1.20.120.530 81 215 1.1E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_12375 e328c697f0cc8c240192d83dafea7f68 295 Gene3D G3DSA:1.10.645.10 190 292 1.7E-6 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12375 e328c697f0cc8c240192d83dafea7f68 295 SUPERFAMILY SSF56762 22 290 1.28E-11 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23905 d78ee58747ef7a49337dbb20d65b02fc 607 Gene3D G3DSA:2.60.40.3100 33 137 6.4E-30 T 13-10-2018 IPR038477 Arylsulfotransferase, N-terminal domain superfamily CS348_23905 d78ee58747ef7a49337dbb20d65b02fc 607 Pfam PF17425 Arylsulfotransferase Ig-like domain 46 135 1.2E-27 T 13-10-2018 IPR035391 Arylsulfotransferase, Ig-like domain CS348_23905 d78ee58747ef7a49337dbb20d65b02fc 607 Pfam PF05935 Arylsulfotransferase (ASST) 155 594 2.0E-142 T 13-10-2018 IPR010262 Arylsulfotransferase, bacteria GO:0004062 CS348_08590 287a72ad6f3f9147bf5de386a2ee3575 393 Gene3D G3DSA:1.20.1250.20 16 202 1.6E-21 T 13-10-2018 CS348_08590 287a72ad6f3f9147bf5de386a2ee3575 393 Gene3D G3DSA:1.20.1250.20 213 392 7.4E-19 T 13-10-2018 CS348_08590 287a72ad6f3f9147bf5de386a2ee3575 393 SUPERFAMILY SSF103473 19 390 6.67E-49 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_08590 287a72ad6f3f9147bf5de386a2ee3575 393 Pfam PF07690 Major Facilitator Superfamily 21 356 3.4E-35 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08590 287a72ad6f3f9147bf5de386a2ee3575 393 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 19 392 2.5E-192 T 13-10-2018 IPR004750 Sugar efflux GO:0005351|GO:0008643|GO:0016021 CS348_10780 f288500d47ce766908b01127901a44d1 113 Pfam PF09313 Domain of unknown function (DUF1971) 14 94 6.8E-27 T 13-10-2018 IPR015392 Domain of unknown function DUF1971 CS348_10780 f288500d47ce766908b01127901a44d1 113 SUPERFAMILY SSF51197 4 102 1.28E-32 T 13-10-2018 CS348_10780 f288500d47ce766908b01127901a44d1 113 PIRSF PIRSF020632 3 112 5.0E-65 T 13-10-2018 IPR014510 Tellurite resistance predicted, YeaR CS348_10780 f288500d47ce766908b01127901a44d1 113 Gene3D G3DSA:2.60.120.10 1 113 6.7E-50 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 Pfam PF07338 Protein of unknown function (DUF1471) 259 314 4.8E-20 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 Pfam PF07338 Protein of unknown function (DUF1471) 118 174 2.2E-16 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 Pfam PF07338 Protein of unknown function (DUF1471) 34 90 1.0E-17 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 PIRSF PIRSF014774 1 314 5.6E-184 T 13-10-2018 IPR025539 YdgH protein CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 SUPERFAMILY SSF159871 239 314 4.58E-18 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 SUPERFAMILY SSF159871 3 94 5.1E-22 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 Gene3D G3DSA:3.30.1660.10 21 91 5.5E-26 T 13-10-2018 IPR025543 Dodecin-like CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 SUPERFAMILY SSF159871 108 177 5.62E-16 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 Gene3D G3DSA:3.30.1660.10 243 314 3.7E-33 T 13-10-2018 IPR025543 Dodecin-like CS348_12665 1efe371d8b7116e6099a9f47fa9be550 314 Gene3D G3DSA:3.30.1660.10 105 174 2.2E-23 T 13-10-2018 IPR025543 Dodecin-like CS348_18475 6bff40d3c254316f314dbc3f5412ec11 71 ProDom PD073772 MEMBRANE TRANSMEMBRANE YAIZ INNER ECS0430 GENOME 1 71 1.0E-34 T 13-10-2018 IPR020490 Uncharacterised protein family YaiZ CS348_18475 6bff40d3c254316f314dbc3f5412ec11 71 Pfam PF10953 Protein of unknown function (DUF2754) 1 65 6.0E-43 T 13-10-2018 IPR020490 Uncharacterised protein family YaiZ CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 13-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 371 379 - T 13-10-2018 IPR018120 Glycoside hydrolase family 1, active site CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 Gene3D G3DSA:3.20.20.80 1 477 1.1E-175 T 13-10-2018 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 371 379 2.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 439 451 2.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 392 403 2.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 414 431 2.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 2.0E-16 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 Pfam PF00232 Glycosyl hydrolase family 1 5 474 5.7E-134 T 13-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 CS348_04715 5b4cd413b3ff6035223c04b8377ec4a8 477 SUPERFAMILY SSF51445 3 470 1.18E-167 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_16430 a8c4cefcb3f92f13dd6f7b5fe30d5bf7 257 Pfam PF13531 Bacterial extracellular solute-binding protein 29 254 1.8E-49 T 13-10-2018 CS348_16430 a8c4cefcb3f92f13dd6f7b5fe30d5bf7 257 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 34 253 2.3E-85 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 CS348_16430 a8c4cefcb3f92f13dd6f7b5fe30d5bf7 257 Gene3D G3DSA:3.40.190.10 107 218 7.6E-92 T 13-10-2018 CS348_16430 a8c4cefcb3f92f13dd6f7b5fe30d5bf7 257 PIRSF PIRSF004846 1 257 5.4E-83 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 CS348_16430 a8c4cefcb3f92f13dd6f7b5fe30d5bf7 257 Gene3D G3DSA:3.40.190.10 30 254 7.6E-92 T 13-10-2018 CS348_16430 a8c4cefcb3f92f13dd6f7b5fe30d5bf7 257 SUPERFAMILY SSF53850 28 255 4.24E-70 T 13-10-2018 CS348_21470 359ab66a3e3be2879f95257a57294b39 336 SUPERFAMILY SSF55347 132 296 6.67E-18 T 13-10-2018 CS348_21470 359ab66a3e3be2879f95257a57294b39 336 SUPERFAMILY SSF51735 3 154 2.24E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_21470 359ab66a3e3be2879f95257a57294b39 336 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 336 48.525 T 13-10-2018 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 CS348_21470 359ab66a3e3be2879f95257a57294b39 336 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 124 8.4E-29 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_21470 359ab66a3e3be2879f95257a57294b39 336 Gene3D G3DSA:3.30.360.10 144 265 1.5E-122 T 13-10-2018 CS348_21470 359ab66a3e3be2879f95257a57294b39 336 Gene3D G3DSA:3.40.50.720 6 320 1.5E-122 T 13-10-2018 CS348_21470 359ab66a3e3be2879f95257a57294b39 336 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 237 7.1E-8 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 CS348_07605 217cf4b59755073ca0329142286eb0ff 321 SUPERFAMILY SSF53067 4 318 4.99E-62 T 13-10-2018 CS348_07605 217cf4b59755073ca0329142286eb0ff 321 Gene3D G3DSA:3.30.420.40 6 308 5.9E-119 T 13-10-2018 CS348_07605 217cf4b59755073ca0329142286eb0ff 321 Gene3D G3DSA:3.40.367.20 100 299 5.9E-119 T 13-10-2018 CS348_07605 217cf4b59755073ca0329142286eb0ff 321 Hamap MF_00524 Glucokinase [glk]. 4 316 35.401 T 13-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CS348_07605 217cf4b59755073ca0329142286eb0ff 321 Pfam PF02685 Glucokinase 6 315 1.3E-122 T 13-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CS348_07605 217cf4b59755073ca0329142286eb0ff 321 TIGRFAM TIGR00749 glk: glucokinase 6 310 4.7E-150 T 13-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 CS348_21970 bf2f28338771592655e65e54b8064644 97 SUPERFAMILY SSF50129 1 96 1.65E-30 T 13-10-2018 IPR011032 GroES-like superfamily CS348_21970 bf2f28338771592655e65e54b8064644 97 SMART SM00883 2 95 1.8E-48 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 Pfam PF00166 Chaperonin 10 Kd subunit 3 95 6.1E-29 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 Gene3D G3DSA:2.30.33.40 1 97 9.1E-36 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.933 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 13-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.9E-27 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.9E-27 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.9E-27 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_21970 bf2f28338771592655e65e54b8064644 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.9E-27 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 ProSitePatterns PS01087 Radical activating enzymes signature. 46 67 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 PIRSF PIRSF000371 21 76 1.7E-11 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 PIRSF PIRSF000371 72 274 1.8E-47 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 Pfam PF13353 4Fe-4S single cluster domain 44 163 9.4E-18 T 13-10-2018 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 SUPERFAMILY SSF102114 51 244 4.12E-24 T 13-10-2018 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 34 267 2.1E-107 T 13-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 Gene3D G3DSA:3.20.20.70 30 274 2.1E-108 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_15370 0a71509136c3a0d28f0ca5603bf4b5e2 274 Pfam PF04055 Radical SAM superfamily 52 206 2.4E-31 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_02885 8709d894363e37b6d21276cc54a3a830 172 Gene3D G3DSA:3.40.50.880 1 172 9.1E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_02885 8709d894363e37b6d21276cc54a3a830 172 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 4 171 4.1E-70 T 13-10-2018 IPR006286 Deglycase PfpI CS348_02885 8709d894363e37b6d21276cc54a3a830 172 SUPERFAMILY SSF52317 3 170 8.62E-47 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_02885 8709d894363e37b6d21276cc54a3a830 172 Pfam PF01965 DJ-1/PfpI family 3 167 2.3E-55 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CS348_12900 5e7baf970d711d947aafff22da08570f 115 Pfam PF00462 Glutaredoxin 17 81 1.1E-18 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CS348_12900 5e7baf970d711d947aafff22da08570f 115 Gene3D G3DSA:3.40.30.10 1 108 3.1E-33 T 13-10-2018 CS348_12900 5e7baf970d711d947aafff22da08570f 115 PIRSF PIRSF005894 1 108 1.1E-52 T 13-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 CS348_12900 5e7baf970d711d947aafff22da08570f 115 SUPERFAMILY SSF52833 2 104 1.36E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_12900 5e7baf970d711d947aafff22da08570f 115 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 3.7E-47 T 13-10-2018 IPR004480 Monothiol glutaredoxin-related CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 SUPERFAMILY SSF54211 3 130 7.97E-42 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 3.7E-27 T 13-10-2018 IPR001498 Impact, N-terminal CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 Gene3D G3DSA:3.30.230.30 1 132 6.8E-53 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 3.3E-15 T 13-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 204 2.0E-84 T 13-10-2018 IPR015796 Impact family, bacterial/archaeal CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 Gene3D G3DSA:3.30.70.240 133 204 1.3E-35 T 13-10-2018 CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 SUPERFAMILY SSF54980 136 203 6.33E-18 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_23885 84833c81dfa035c31cb801e64b9c515d 204 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Pfam PF13954 PapC N-terminal domain 23 168 3.1E-34 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Gene3D G3DSA:2.60.40.3110 259 347 2.3E-31 T 13-10-2018 CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Gene3D G3DSA:3.10.20.410 21 146 2.9E-20 T 13-10-2018 CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Gene3D G3DSA:2.60.40.2610 656 747 2.3E-13 T 13-10-2018 CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Pfam PF13953 PapC C-terminal domain 753 812 2.5E-12 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 301 311 - T 13-10-2018 IPR018030 Fimbrial membrane usher, conserved site CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Pfam PF00577 Outer membrane usher protein 186 741 1.7E-163 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 Gene3D G3DSA:2.60.40.2070 751 829 1.9E-22 T 13-10-2018 CS348_04840 c67ccad650d5ff9b780416f9782d45c9 829 SUPERFAMILY SSF141729 22 145 6.15E-24 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 1.5E-39 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 SUPERFAMILY SSF53223 1 122 3.26E-40 T 13-10-2018 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 279 3.1E-68 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.8E-88 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.673 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 SUPERFAMILY SSF51735 123 282 1.05E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 Gene3D G3DSA:3.40.50.10860 8 276 4.0E-107 T 13-10-2018 CS348_17735 d8cad0adaaf07cc0ca5622f44031eafa 288 Gene3D G3DSA:3.40.50.720 6 259 4.0E-107 T 13-10-2018 CS348_21000 1142b9eb0b01d224e11b8a4f771e00fe 306 Gene3D G3DSA:3.40.1350.10 20 129 6.9E-9 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CS348_21000 1142b9eb0b01d224e11b8a4f771e00fe 306 Pfam PF01939 Endonuclease NucS 23 115 1.7E-4 T 13-10-2018 IPR002793 Endonuclease NucS GO:0004519 CS348_19065 7b015319509424d2d0c329d31bcea47f 217 SUPERFAMILY SSF161098 9 201 1.44E-47 T 13-10-2018 IPR035906 MetI-like superfamily CS348_19065 7b015319509424d2d0c329d31bcea47f 217 Gene3D G3DSA:1.10.3720.10 1 217 1.4E-61 T 13-10-2018 IPR035906 MetI-like superfamily CS348_19065 7b015319509424d2d0c329d31bcea47f 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 214 1.2E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 Pfam PF01555 DNA methylase 34 250 3.1E-52 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 237 257 6.8E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 33 47 6.8E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 195 212 6.8E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 214 232 6.8E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 68 88 6.8E-37 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 SUPERFAMILY SSF53335 15 257 1.17E-64 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 37 43 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_02280 00159eeefdc3edf8fdbd9a3584808f7e 294 Gene3D G3DSA:3.40.50.150 12 289 9.0E-74 T 13-10-2018 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 89 97 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 SUPERFAMILY SSF53681 127 279 2.16E-33 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 SUPERFAMILY SSF53681 24 125 7.19E-31 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 Gene3D G3DSA:3.40.50.1860 114 227 4.1E-95 T 13-10-2018 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 Pfam PF01177 Asp/Glu/Hydantoin racemase 26 235 2.8E-24 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 TIGRFAM TIGR00067 glut_race: glutamate racemase 24 272 2.0E-92 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 200 210 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 Hamap MF_00258 Glutamate racemase [murI]. 22 274 34.722 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_22955 a82295219db5c77973cb0194ff84ad0b 283 Gene3D G3DSA:3.40.50.1860 26 263 4.1E-95 T 13-10-2018 CS348_18560 a8ce75ddf0e6fbfd90c6b4f4217df9b2 334 SMART SM00342 241 323 2.2E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_18560 a8ce75ddf0e6fbfd90c6b4f4217df9b2 334 Gene3D G3DSA:1.10.10.60 223 331 2.0E-24 T 13-10-2018 CS348_18560 a8ce75ddf0e6fbfd90c6b4f4217df9b2 334 Pfam PF12833 Helix-turn-helix domain 247 324 1.2E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_18560 a8ce75ddf0e6fbfd90c6b4f4217df9b2 334 SUPERFAMILY SSF46689 224 275 4.39E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_18560 a8ce75ddf0e6fbfd90c6b4f4217df9b2 334 SUPERFAMILY SSF46689 277 325 6.09E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_18560 a8ce75ddf0e6fbfd90c6b4f4217df9b2 334 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 319 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_15935 5dfe0cb2be5d0bf406c4df47e3042306 158 Pfam PF10722 Putative bacterial sensory transduction regulator 8 131 4.0E-16 T 13-10-2018 IPR019660 Putative sensory transduction regulator YbjN CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 183 2.4E-49 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 Gene3D G3DSA:1.10.285.10 13 374 1.3E-187 T 13-10-2018 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 SUPERFAMILY SSF51735 202 446 1.58E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 SUPERFAMILY SSF53223 7 196 1.02E-73 T 13-10-2018 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 Gene3D G3DSA:3.40.50.10860 55 190 1.3E-187 T 13-10-2018 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 8.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 8.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 8.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 8.3E-33 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 1.4E-87 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 PIRSF PIRSF000185 22 447 3.0E-116 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 Gene3D G3DSA:1.10.285.10 387 447 9.9E-11 T 13-10-2018 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 SMART SM00839 204 445 1.3E-94 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CS348_13835 e33e6d39284c72efc354d51a42f4d4c6 447 Gene3D G3DSA:3.40.50.720 209 373 1.3E-187 T 13-10-2018 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 18 321 9.6E-151 T 13-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 Gene3D G3DSA:3.40.190.10 23 297 1.7E-123 T 13-10-2018 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 119 136 - T 13-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 Pfam PF13343 Bacterial extracellular solute-binding protein 73 298 2.9E-18 T 13-10-2018 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 6 327 1.7E-182 T 13-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 SUPERFAMILY SSF53850 22 323 1.6E-63 T 13-10-2018 CS348_19800 9f7c048198dff17abb9f030873f1c3e6 327 Gene3D G3DSA:3.40.190.10 123 322 1.7E-123 T 13-10-2018 CS348_04145 6702ce85b477b0bc51606cabb41e3c34 321 Gene3D G3DSA:2.60.40.1090 177 320 8.3E-8 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_04145 6702ce85b477b0bc51606cabb41e3c34 321 Pfam PF00419 Fimbrial protein 178 320 1.3E-8 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_04145 6702ce85b477b0bc51606cabb41e3c34 321 SUPERFAMILY SSF49401 186 320 5.97E-9 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_24685 2ab8acc2373901d412f825db8ceae710 206 SUPERFAMILY SSF53041 1 159 1.83E-31 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CS348_24685 2ab8acc2373901d412f825db8ceae710 206 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 CS348_24685 2ab8acc2373901d412f825db8ceae710 206 SMART SM00857 3 159 5.5E-41 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CS348_24685 2ab8acc2373901d412f825db8ceae710 206 Gene3D G3DSA:3.40.50.1390 2 169 2.4E-32 T 13-10-2018 CS348_24685 2ab8acc2373901d412f825db8ceae710 206 Pfam PF00239 Resolvase, N terminal domain 3 159 1.7E-30 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CS348_24685 2ab8acc2373901d412f825db8ceae710 206 Pfam PF00356 Bacterial regulatory proteins, lacI family 183 203 1.1E-4 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21725 d6b4f6b94d4b3482a20affad68e01856 109 Pfam PF07338 Protein of unknown function (DUF1471) 53 108 3.2E-15 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_21725 d6b4f6b94d4b3482a20affad68e01856 109 SUPERFAMILY SSF159871 10 108 1.57E-18 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_21725 d6b4f6b94d4b3482a20affad68e01856 109 Gene3D G3DSA:3.30.1660.10 42 109 5.5E-13 T 13-10-2018 IPR025543 Dodecin-like CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 Gene3D G3DSA:3.40.50.1000 106 315 5.5E-118 T 13-10-2018 IPR023214 HAD superfamily CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 112 283 4.1E-24 T 13-10-2018 CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 Pfam PF12710 haloacid dehalogenase-like hydrolase 146 280 1.6E-17 T 13-10-2018 CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 Gene3D G3DSA:3.30.70.2020 35 319 5.5E-118 T 13-10-2018 CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 97 315 6.8E-91 T 13-10-2018 CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 SUPERFAMILY SSF56784 106 311 9.36E-47 T 13-10-2018 IPR036412 HAD-like superfamily CS348_20480 1efb260607a5e991da18cd4ae3f85a60 322 Gene3D G3DSA:1.10.150.210 120 182 5.5E-118 T 13-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 SUPERFAMILY SSF46785 4 57 1.33E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_01500 8c98826ed933b65e2dac27e668b88812 404 Hamap MF_01987 Ribokinase [rbsK]. 92 392 21.224 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 337 350 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 SUPERFAMILY SSF53613 94 380 1.37E-75 T 13-10-2018 IPR029056 Ribokinase-like CS348_01500 8c98826ed933b65e2dac27e668b88812 404 Gene3D G3DSA:1.10.10.10 1 52 1.9E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01500 8c98826ed933b65e2dac27e668b88812 404 Gene3D G3DSA:3.40.1190.20 78 399 6.1E-85 T 13-10-2018 IPR029056 Ribokinase-like CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00990 Ribokinase signature 264 279 1.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00990 Ribokinase signature 308 319 1.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00990 Ribokinase signature 123 142 1.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00990 Ribokinase signature 96 117 1.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00990 Ribokinase signature 196 209 1.1E-26 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 Pfam PF00294 pfkB family carbohydrate kinase 92 381 2.5E-66 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 37 55 7.1E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 23 37 7.1E-7 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 SMART SM00420 5 57 1.0E-15 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_01500 8c98826ed933b65e2dac27e668b88812 404 Pfam PF08220 DeoR-like helix-turn-helix domain 5 55 1.5E-14 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF05860 haemagglutination activity domain 32 166 1.0E-30 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF13332 Haemagluttinin repeat 1144 1204 1.9E-4 T 13-10-2018 IPR025157 Hemagglutinin repeat CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF13332 Haemagluttinin repeat 1213 1374 2.5E-23 T 13-10-2018 IPR025157 Hemagglutinin repeat CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF13332 Haemagluttinin repeat 623 784 7.3E-12 T 13-10-2018 IPR025157 Hemagglutinin repeat CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF13332 Haemagluttinin repeat 805 890 1.6E-4 T 13-10-2018 IPR025157 Hemagglutinin repeat CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF13332 Haemagluttinin repeat 925 1074 5.3E-15 T 13-10-2018 IPR025157 Hemagglutinin repeat CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Pfam PF13332 Haemagluttinin repeat 397 455 3.5E-5 T 13-10-2018 IPR025157 Hemagglutinin repeat CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 SUPERFAMILY SSF51126 41 298 1.22E-51 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 SMART SM00912 48 168 1.0E-44 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 66 161 4.0E-17 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal CS348_25225 2a1007ca9f46b523c6007936bafb0941 1510 Gene3D G3DSA:2.160.20.10 31 281 1.1E-77 T 13-10-2018 IPR012334 Pectin lyase fold CS348_10550 6d2bb8fedf91c121ddfbaf9145d5f21d 63 Pfam PF07358 Protein of unknown function (DUF1482) 1 57 1.1E-34 T 13-10-2018 IPR009954 Protein of unknown function DUF1482 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 SUPERFAMILY SSF52540 2 235 1.74E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.4E-49 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 307.348 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 6.9E-12 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Pfam PF00679 Elongation factor G C-terminus 399 482 2.4E-19 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Gene3D G3DSA:3.30.70.2570 479 553 4.3E-33 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Gene3D G3DSA:3.40.50.300 1 185 3.8E-71 T 13-10-2018 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 SUPERFAMILY SSF54980 399 493 5.28E-24 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 8.1E-302 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Gene3D G3DSA:3.30.70.3380 368 478 5.6E-39 T 13-10-2018 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Gene3D G3DSA:3.30.70.870 286 367 1.9E-35 T 13-10-2018 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 SUPERFAMILY SSF54980 292 370 2.45E-18 T 13-10-2018 IPR035647 EF-G domain III/V-like CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 1.0E-52 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 172 1.8E-16 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_06630 c131d3bc49e0375e95c42fefa87f9e1c 599 Gene3D G3DSA:2.40.30.10 186 285 6.9E-35 T 13-10-2018 CS348_07390 2979b1e3249676b1fe3f849138fa144f 288 SUPERFAMILY SSF53613 23 279 1.87E-58 T 13-10-2018 IPR029056 Ribokinase-like CS348_07390 2979b1e3249676b1fe3f849138fa144f 288 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 21 284 6.3E-50 T 13-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CS348_07390 2979b1e3249676b1fe3f849138fa144f 288 Gene3D G3DSA:3.40.1190.20 7 287 1.6E-74 T 13-10-2018 IPR029056 Ribokinase-like CS348_07390 2979b1e3249676b1fe3f849138fa144f 288 Pfam PF08543 Phosphomethylpyrimidine kinase 93 269 5.2E-23 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CS348_07390 2979b1e3249676b1fe3f849138fa144f 288 Hamap MF_01638 Pyridoxine/pyridoxal/pyridoxamine kinase [pdxK]. 1 287 55.17 T 13-10-2018 IPR023479 Pyridoxine/pyridoxal/pyridoxamine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 CS348_15390 fa19fa1a8e8edc16e0b11586a9ed6a5f 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 2.8E-80 T 13-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B CS348_15390 fa19fa1a8e8edc16e0b11586a9ed6a5f 205 SUPERFAMILY SSF54862 3 199 3.87E-70 T 13-10-2018 CS348_15390 fa19fa1a8e8edc16e0b11586a9ed6a5f 205 Pfam PF13247 4Fe-4S dicluster domain 59 153 6.8E-29 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_15390 fa19fa1a8e8edc16e0b11586a9ed6a5f 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_15390 fa19fa1a8e8edc16e0b11586a9ed6a5f 205 Gene3D G3DSA:3.30.70.20 1 203 5.7E-57 T 13-10-2018 CS348_15390 fa19fa1a8e8edc16e0b11586a9ed6a5f 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0027 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 SUPERFAMILY SSF50249 5 75 1.88E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 Pfam PF11967 Recombination protein O N terminal 5 76 7.9E-23 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 230 1.8E-38 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 Gene3D G3DSA:2.40.50.140 1 78 6.2E-36 T 13-10-2018 CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 Gene3D G3DSA:1.20.1440.120 79 242 6.0E-58 T 13-10-2018 CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 23.06 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 Pfam PF02565 Recombination protein O C terminal 83 226 6.4E-24 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CS348_06655 31048eb7bb0a8ac0df4e61f923568dde 242 SUPERFAMILY SSF57863 86 161 2.28E-8 T 13-10-2018 IPR037278 ARFGAP/RecO-like zinc finger CS348_06140 2900520b50e65134405690308d9d37c8 325 Hamap MF_01083 Protein CsiD [csiD]. 1 325 73.816 T 13-10-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 CS348_06140 2900520b50e65134405690308d9d37c8 325 Gene3D G3DSA:3.60.130.10 15 325 1.3E-131 T 13-10-2018 CS348_06140 2900520b50e65134405690308d9d37c8 325 SUPERFAMILY SSF51197 17 323 2.79E-95 T 13-10-2018 CS348_06140 2900520b50e65134405690308d9d37c8 325 ProDom PD135861 METAL-BINDING IRON CSID GAB CYTOPLASMIC 3D-STRUCTURE HOMOLOG DIRECT SEQUENCING 19 314 1.0E-165 T 13-10-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 CS348_06140 2900520b50e65134405690308d9d37c8 325 Pfam PF08943 CsiD 21 314 6.2E-149 T 13-10-2018 IPR015038 Uncharacterised protein family CsiD GO:0005506 CS348_17820 4c335e8afe938ecc9e978f17495cad13 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_17820 4c335e8afe938ecc9e978f17495cad13 228 Gene3D G3DSA:3.40.50.300 5 228 2.6E-66 T 13-10-2018 CS348_17820 4c335e8afe938ecc9e978f17495cad13 228 Pfam PF00005 ABC transporter 27 174 2.0E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_17820 4c335e8afe938ecc9e978f17495cad13 228 SUPERFAMILY SSF52540 7 226 2.44E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17820 4c335e8afe938ecc9e978f17495cad13 228 SMART SM00382 35 221 2.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.6E-45 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 13-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 PIRSF PIRSF002144 1 92 3.5E-31 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.1E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.1E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.1E-24 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.439 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 Pfam PF00203 Ribosomal protein S19 3 83 2.2E-35 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 SUPERFAMILY SSF54570 3 84 6.02E-35 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02030 707f49a5e41dfbeb219aeb4bac8402d7 92 Gene3D G3DSA:3.30.860.10 1 92 4.8E-43 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_09980 85ec88501185a191b44a4ee28036a653 250 PIRSF PIRSF039085 1 249 1.2E-111 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CS348_09980 85ec88501185a191b44a4ee28036a653 250 Pfam PF00005 ABC transporter 19 173 7.6E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_09980 85ec88501185a191b44a4ee28036a653 250 SMART SM00382 28 221 9.9E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_09980 85ec88501185a191b44a4ee28036a653 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_09980 85ec88501185a191b44a4ee28036a653 250 Gene3D G3DSA:3.40.50.300 1 249 9.6E-83 T 13-10-2018 CS348_09980 85ec88501185a191b44a4ee28036a653 250 SUPERFAMILY SSF52540 4 243 1.9E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 170 190 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 117 127 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 376 393 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 63 87 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 101 115 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 339 361 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 PRINTS PR00906 SecA protein signature 413 426 6.8E-74 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 SUPERFAMILY SSF81767 227 368 6.54E-44 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Gene3D G3DSA:3.40.50.300 22 415 1.8E-176 T 13-10-2018 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.953 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 SUPERFAMILY SSF52540 416 618 2.74E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19655 b8395117c7b712c2f88888818022d73d 901 Pfam PF01043 SecA preprotein cross-linking domain 232 358 1.7E-39 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 CS348_19655 b8395117c7b712c2f88888818022d73d 901 SMART SM00957 6 402 0.0 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CS348_19655 b8395117c7b712c2f88888818022d73d 901 ProSitePatterns PS01312 SecA family signature. 500 515 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Pfam PF07516 SecA Wing and Scaffold domain 617 830 1.8E-68 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CS348_19655 b8395117c7b712c2f88888818022d73d 901 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CS348_19655 b8395117c7b712c2f88888818022d73d 901 SMART SM00958 228 358 3.1E-83 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Gene3D G3DSA:3.90.1440.10 229 368 1.8E-176 T 13-10-2018 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Gene3D G3DSA:3.40.50.300 417 620 5.2E-89 T 13-10-2018 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Gene3D G3DSA:1.10.3060.10 621 833 2.3E-84 T 13-10-2018 CS348_19655 b8395117c7b712c2f88888818022d73d 901 Pfam PF07517 SecA DEAD-like domain 7 402 6.8E-132 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CS348_19655 b8395117c7b712c2f88888818022d73d 901 SUPERFAMILY SSF81886 620 889 3.14E-85 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily CS348_19655 b8395117c7b712c2f88888818022d73d 901 SUPERFAMILY SSF52540 5 415 3.19E-83 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19655 b8395117c7b712c2f88888818022d73d 901 Pfam PF02810 SEC-C motif 881 899 1.4E-10 T 13-10-2018 IPR004027 SEC-C motif CS348_17045 13da86920be7fd8e1e850f17c58d7dfd 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 9.3E-29 T 13-10-2018 IPR007454 Uncharacterised protein family UPF0250 CS348_17045 13da86920be7fd8e1e850f17c58d7dfd 87 Gene3D G3DSA:3.30.70.260 1 87 1.9E-34 T 13-10-2018 CS348_17045 13da86920be7fd8e1e850f17c58d7dfd 87 SUPERFAMILY SSF117991 1 87 3.66E-31 T 13-10-2018 IPR027471 YbeD-like domain superfamily CS348_17045 13da86920be7fd8e1e850f17c58d7dfd 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.586 T 13-10-2018 IPR007454 Uncharacterised protein family UPF0250 CS348_04325 205083a51a12bf326c6ae219bfe0faa3 319 Pfam PF01261 Xylose isomerase-like TIM barrel 26 218 3.3E-22 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_04325 205083a51a12bf326c6ae219bfe0faa3 319 Gene3D G3DSA:3.20.20.150 1 241 6.0E-43 T 13-10-2018 CS348_04325 205083a51a12bf326c6ae219bfe0faa3 319 SUPERFAMILY SSF51658 18 232 2.63E-34 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 6.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 6.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 6.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 6.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 6.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 6.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 SUPERFAMILY SSF51735 9 252 2.84E-77 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 Pfam PF00106 short chain dehydrogenase 10 203 1.6E-63 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 Gene3D G3DSA:3.40.50.720 1 253 4.9E-78 T 13-10-2018 CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 2.2E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 2.2E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_21180 d29c4c74ff9d2cb1eb357dc6fe9188ee 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 2.2E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 Pfam PF00285 Citrate synthase, C-terminal domain 46 410 2.0E-132 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 14 421 4.7E-243 T 13-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 Gene3D G3DSA:1.10.580.10 57 410 1.1E-153 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 Gene3D G3DSA:2.20.28.60 1 50 1.2E-21 T 13-10-2018 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PRINTS PR00143 Citrate synthase signature 165 178 5.1E-56 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PRINTS PR00143 Citrate synthase signature 359 375 5.1E-56 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PRINTS PR00143 Citrate synthase signature 219 234 5.1E-56 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PRINTS PR00143 Citrate synthase signature 241 269 5.1E-56 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PRINTS PR00143 Citrate synthase signature 379 393 5.1E-56 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PRINTS PR00143 Citrate synthase signature 296 316 5.1E-56 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 PIRSF PIRSF001369 38 427 2.3E-176 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 Gene3D G3DSA:1.10.230.10 268 376 1.1E-153 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain CS348_16670 2c6ac56e49714f5c24dff4ecb1ad577e 427 SUPERFAMILY SSF48256 8 424 1.44E-168 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 CS348_14115 d10e550798afceced6687da1f2f2016f 156 Gene3D G3DSA:2.60.40.790 40 147 2.1E-26 T 13-10-2018 IPR008978 HSP20-like chaperone CS348_14115 d10e550798afceced6687da1f2f2016f 156 Pfam PF00011 Hsp20/alpha crystallin family 48 145 3.2E-16 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain CS348_14115 d10e550798afceced6687da1f2f2016f 156 SUPERFAMILY SSF49764 16 145 8.02E-21 T 13-10-2018 IPR008978 HSP20-like chaperone CS348_11775 21dc1e82865fac49ba633a02a7873e14 172 SUPERFAMILY SSF81342 4 168 8.63E-21 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_11775 21dc1e82865fac49ba633a02a7873e14 172 Pfam PF01292 Prokaryotic cytochrome b561 5 168 2.4E-14 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_13450 70541db1bb83a00588d4bff57f8fc9ae 307 Gene3D G3DSA:3.40.50.150 1 183 5.0E-23 T 13-10-2018 CS348_13450 70541db1bb83a00588d4bff57f8fc9ae 307 Pfam PF00145 C-5 cytosine-specific DNA methylase 77 167 7.7E-13 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_13450 70541db1bb83a00588d4bff57f8fc9ae 307 SUPERFAMILY SSF53335 49 300 6.64E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 SMART SM00420 11 63 1.7E-20 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 29 43 2.6E-12 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 43 61 2.6E-12 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 ProSitePatterns PS00894 DeoR-type HTH domain signature. 11 45 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 Gene3D G3DSA:1.10.10.10 2 60 1.5E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 SUPERFAMILY SSF100950 79 237 5.15E-26 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 Pfam PF08220 DeoR-like helix-turn-helix domain 11 66 8.2E-21 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 Pfam PF00455 DeoR C terminal sensor domain 80 237 5.1E-48 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 Gene3D G3DSA:3.30.750.70 75 135 3.0E-8 T 13-10-2018 CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 SUPERFAMILY SSF46785 9 75 3.08E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_23670 6f70cf0a33dd1e8b767c60e1e9fe8da0 267 SMART SM01134 77 238 6.0E-61 T 13-10-2018 CS348_11790 0f28a77f7b85eb5abcd0799f3fe9ecca 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 218 2.0E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_11790 0f28a77f7b85eb5abcd0799f3fe9ecca 226 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 16 111 1.2E-23 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_11790 0f28a77f7b85eb5abcd0799f3fe9ecca 226 SUPERFAMILY SSF161098 18 210 5.89E-31 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11790 0f28a77f7b85eb5abcd0799f3fe9ecca 226 Gene3D G3DSA:1.10.3720.10 6 220 6.4E-42 T 13-10-2018 IPR035906 MetI-like superfamily CS348_21255 be644dc48da6364b2e798639473fd39a 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 147 3.6E-48 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 Gene3D G3DSA:3.40.50.1370 7 329 4.3E-139 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 Gene3D G3DSA:3.40.50.1370 150 319 4.3E-139 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 1.2E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 1.2E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 1.2E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 1.2E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 1.2E-32 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21255 be644dc48da6364b2e798639473fd39a 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 4.2E-136 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 3.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 3.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 3.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 3.2E-25 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 1.5E-54 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 SUPERFAMILY SSF53671 2 333 1.96E-97 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CS348_21255 be644dc48da6364b2e798639473fd39a 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 82.399 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 SUPERFAMILY SSF52540 137 381 2.06E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 Gene3D G3DSA:1.10.10.60 387 441 4.1E-10 T 13-10-2018 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 SUPERFAMILY SSF52172 6 181 3.98E-43 T 13-10-2018 IPR011006 CheY-like superfamily CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 SMART SM00382 157 300 1.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 Pfam PF00158 Sigma-54 interaction domain 137 303 3.8E-72 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 Gene3D G3DSA:3.40.50.2300 2 129 4.3E-36 T 13-10-2018 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 Gene3D G3DSA:3.40.50.300 130 307 2.0E-63 T 13-10-2018 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 SUPERFAMILY SSF46689 388 438 2.99E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 Gene3D G3DSA:1.10.8.60 308 386 4.3E-22 T 13-10-2018 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 SMART SM00448 7 118 6.1E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 Pfam PF00072 Response regulator receiver domain 10 118 1.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_06740 21abe7cdee03a7d70e8efa563ef6ee30 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Pfam PF00384 Molybdopterin oxidoreductase 241 682 7.8E-13 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Gene3D G3DSA:3.40.50.740 155 186 8.4E-6 T 13-10-2018 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Gene3D G3DSA:3.40.50.740 558 696 1.2E-13 T 13-10-2018 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 SMART SM00926 71 152 2.2E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Gene3D G3DSA:2.20.25.90 64 112 2.0E-6 T 13-10-2018 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Pfam PF01568 Molydopterin dinucleotide binding domain 890 988 8.2E-13 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 75 152 9.1E-7 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 SUPERFAMILY SSF53706 72 866 2.54E-117 T 13-10-2018 CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 SUPERFAMILY SSF50692 873 1018 2.94E-25 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_13165 bcbaad760de5f5a1600041e58f6eca9b 1020 Gene3D G3DSA:2.40.40.20 848 1001 5.0E-22 T 13-10-2018 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 PIRSF PIRSF036427 1 236 5.0E-75 T 13-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 210 3.3E-45 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 Gene3D G3DSA:3.30.950.10 129 236 1.0E-16 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 Gene3D G3DSA:3.40.1010.10 1 128 7.0E-27 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 SUPERFAMILY SSF53790 1 235 8.37E-43 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 94 126 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_09545 3f04cf37ab5fc835a48e336ed18a4098 237 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 231 3.0E-82 T 13-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 CS348_22230 a27f249055c879667d3909d1359d7a31 111 Pfam PF03831 PhnA domain 44 111 1.1E-34 T 13-10-2018 IPR013988 PhnA protein, C-terminal CS348_22230 a27f249055c879667d3909d1359d7a31 111 SUPERFAMILY SSF57783 1 36 2.38E-14 T 13-10-2018 CS348_22230 a27f249055c879667d3909d1359d7a31 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 111 3.9E-62 T 13-10-2018 IPR004624 PhnA protein CS348_22230 a27f249055c879667d3909d1359d7a31 111 Pfam PF08274 PhnA Zinc-Ribbon 2 30 1.9E-16 T 13-10-2018 IPR013987 PhnA protein, N-terminal CS348_22230 a27f249055c879667d3909d1359d7a31 111 Gene3D G3DSA:2.20.25.10 1 41 6.1E-20 T 13-10-2018 CS348_22230 a27f249055c879667d3909d1359d7a31 111 SUPERFAMILY SSF82057 39 110 1.37E-29 T 13-10-2018 CS348_22230 a27f249055c879667d3909d1359d7a31 111 Gene3D G3DSA:2.30.30.40 42 111 9.4E-36 T 13-10-2018 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 2.0E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 314 6.9E-125 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 7.4E-52 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 SUPERFAMILY SSF51905 2 315 7.48E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 Gene3D G3DSA:3.50.50.60 118 245 4.1E-134 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 Gene3D G3DSA:3.50.50.60 9 312 4.1E-134 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 4.4E-41 T 13-10-2018 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.4E-41 T 13-10-2018 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 4.4E-41 T 13-10-2018 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 4.4E-41 T 13-10-2018 CS348_15430 9b5b9fc87868a2decba2713ef254607c 322 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 4.4E-41 T 13-10-2018 CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 Gene3D G3DSA:1.10.10.10 400 462 1.7E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 Pfam PF07514 Putative helicase 33 242 1.8E-38 T 13-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 33 245 1.3E-75 T 13-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 SUPERFAMILY SSF46785 396 517 3.81E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 Gene3D G3DSA:2.40.10.200 416 513 1.7E-31 T 13-10-2018 CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 Gene3D G3DSA:1.10.3210.40 37 260 2.3E-15 T 13-10-2018 CS348_04355 aafe2eaf927fe9e24d68098d7b1e081d 528 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 399 516 2.3E-20 T 13-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal CS348_14810 c8180f649f2152eba2670776616dab07 426 SUPERFAMILY SSF103473 12 414 2.22E-69 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_14810 c8180f649f2152eba2670776616dab07 426 Pfam PF07690 Major Facilitator Superfamily 24 270 2.3E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_14810 c8180f649f2152eba2670776616dab07 426 Gene3D G3DSA:1.20.1250.20 16 422 1.6E-56 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 6.5E-69 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 6.5E-69 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 6.5E-69 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 6.5E-69 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 6.5E-69 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 6.5E-69 T 13-10-2018 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 6 215 9.4E-87 T 13-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 Pfam PF03379 CcmB protein 2 215 2.8E-83 T 13-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_08400 25686f65d6af8a9b0d6885aa56ba3933 219 PIRSF PIRSF002764 1 219 2.6E-76 T 13-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 6.5E-69 T 13-10-2018 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 6.5E-69 T 13-10-2018 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 6.5E-69 T 13-10-2018 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 6.5E-69 T 13-10-2018 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 6.5E-69 T 13-10-2018 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 6.5E-69 T 13-10-2018 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 6 215 9.4E-87 T 13-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 Pfam PF03379 CcmB protein 2 215 2.8E-83 T 13-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_00095 25686f65d6af8a9b0d6885aa56ba3933 219 PIRSF PIRSF002764 1 219 2.6E-76 T 13-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria CS348_10135 bb8e235498d5d76642b3f59e371caf7a 167 SMART SM00260 14 151 8.8E-46 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CS348_10135 bb8e235498d5d76642b3f59e371caf7a 167 SUPERFAMILY SSF50341 16 156 7.32E-39 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CS348_10135 bb8e235498d5d76642b3f59e371caf7a 167 Gene3D G3DSA:2.40.50.180 37 146 2.0E-39 T 13-10-2018 CS348_10135 bb8e235498d5d76642b3f59e371caf7a 167 Gene3D G3DSA:2.30.30.40 20 145 2.0E-39 T 13-10-2018 CS348_10135 bb8e235498d5d76642b3f59e371caf7a 167 Pfam PF01584 CheW-like domain 18 154 9.9E-37 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 SUPERFAMILY SSF56519 53 249 3.4E-51 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 SUPERFAMILY SSF56601 250 611 9.58E-86 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 Gene3D G3DSA:3.90.1310.10 60 243 1.2E-48 T 13-10-2018 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 Gene3D G3DSA:3.30.1390.30 81 156 1.2E-48 T 13-10-2018 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 2 614 49.098 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 233 1.1E-45 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 Gene3D G3DSA:3.40.710.10 244 621 3.5E-89 T 13-10-2018 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 15 611 2.1E-222 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_10185 4f2a96da0b9aed40d9750c0be228400f 623 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 607 3.2E-72 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_16780 cf3897b9f64850d5d652f3531b11968a 256 SUPERFAMILY SSF53474 12 252 1.45E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_16780 cf3897b9f64850d5d652f3531b11968a 256 Gene3D G3DSA:3.40.50.1820 1 253 4.9E-75 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_16780 cf3897b9f64850d5d652f3531b11968a 256 Pfam PF12697 Alpha/beta hydrolase family 19 246 8.6E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 5 266 6.4E-92 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 SUPERFAMILY SSF51735 3 159 1.5E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 99 3.7E-24 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 Gene3D G3DSA:3.40.50.720 1 166 9.2E-52 T 13-10-2018 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 PIRSF PIRSF000193 2 269 3.9E-98 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 Gene3D G3DSA:1.10.3730.10 169 269 5.5E-40 T 13-10-2018 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 SUPERFAMILY SSF48179 162 268 2.72E-37 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 3 266 26.923 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CS348_18435 4eecdee7977c9dfdc3d3cfb172a0151e 269 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 266 1.6E-38 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CS348_16110 daae79bc2b65a32ff5ad887cfc955ea5 249 SUPERFAMILY SSF69572 3 248 3.53E-87 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CS348_16110 daae79bc2b65a32ff5ad887cfc955ea5 249 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 8 247 1.8E-132 T 13-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 CS348_16110 daae79bc2b65a32ff5ad887cfc955ea5 249 Gene3D G3DSA:3.40.50.720 4 249 1.0E-89 T 13-10-2018 CS348_16110 daae79bc2b65a32ff5ad887cfc955ea5 249 Pfam PF00899 ThiF family 12 244 3.1E-64 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CS348_22055 5d3660e61a8d6f87e87bf7066233d254 271 Pfam PF02432 Fimbrial, major and minor subunit 32 270 2.6E-17 T 13-10-2018 IPR003467 Fimbrial, major/minor subunit GO:0007155|GO:0009289 CS348_01370 9836a7d42ee036f8215c550e6c21330d 90 Pfam PF06611 Protein of unknown function (DUF1145) 2 58 2.0E-25 T 13-10-2018 IPR009525 Protein of unknown function DUF1145 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 PIRSF PIRSF000521 26 159 1.3E-6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 PIRSF PIRSF000521 159 400 5.5E-37 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 220 257 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 400 72.224 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 Hamap MF_01173 Succinylornithine transaminase [astC]. 1 406 73.81 T 13-10-2018 IPR026330 Succinylornithine transaminase GO:0006527|GO:0006593|GO:0043825 KEGG: 00330+2.6.1.81 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 Gene3D G3DSA:3.90.1150.10 22 391 8.6E-161 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 SUPERFAMILY SSF53383 13 395 2.18E-128 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 Gene3D G3DSA:3.40.640.10 57 302 8.6E-161 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 Pfam PF00202 Aminotransferase class-III 21 394 3.5E-126 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 13 397 1.8E-164 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CS348_13810 f26fb5978fc31dcdba9fa4bbf33b25d8 408 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 5 400 1.5E-223 T 13-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 CS348_24585 365242a7972c9e2349a7eac8cc241cc4 395 Pfam PF07690 Major Facilitator Superfamily 10 343 2.5E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_24585 365242a7972c9e2349a7eac8cc241cc4 395 Hamap MF_01530 Multidrug resistance protein MdtL [mdtL]. 1 393 40.823 T 13-10-2018 IPR023697 Multidrug resistance protein MdtL GO:0005215|GO:0005886 CS348_24585 365242a7972c9e2349a7eac8cc241cc4 395 SUPERFAMILY SSF103473 3 387 1.44E-52 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_24585 365242a7972c9e2349a7eac8cc241cc4 395 Gene3D G3DSA:1.20.1720.10 4 377 1.0E-69 T 13-10-2018 CS348_16195 f9b7fc71ba3738216fc9c42778122fc8 740 SUPERFAMILY SSF50182 556 614 1.28E-9 T 13-10-2018 IPR010920 LSM domain superfamily CS348_16195 f9b7fc71ba3738216fc9c42778122fc8 740 Gene3D G3DSA:2.30.30.60 572 620 4.5E-11 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CS348_16195 f9b7fc71ba3738216fc9c42778122fc8 740 Pfam PF00924 Mechanosensitive ion channel 513 712 3.7E-43 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CS348_16195 f9b7fc71ba3738216fc9c42778122fc8 740 SUPERFAMILY SSF82861 474 554 3.4E-12 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CS348_16195 f9b7fc71ba3738216fc9c42778122fc8 740 SUPERFAMILY SSF82689 625 720 7.45E-8 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CS348_16195 f9b7fc71ba3738216fc9c42778122fc8 740 Gene3D G3DSA:3.30.70.100 624 711 5.0E-14 T 13-10-2018 CS348_24660 f82500b28e24c5b6e998cb7928c25b86 253 SUPERFAMILY SSF53098 65 244 2.98E-36 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_24660 f82500b28e24c5b6e998cb7928c25b86 253 Pfam PF00929 Exonuclease 75 232 9.8E-15 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_24660 f82500b28e24c5b6e998cb7928c25b86 253 SMART SM00479 73 242 2.4E-32 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_24660 f82500b28e24c5b6e998cb7928c25b86 253 Gene3D G3DSA:3.30.420.10 70 240 3.7E-37 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 SUPERFAMILY SSF46548 107 229 3.14E-31 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 Gene3D G3DSA:3.10.20.30 3 106 9.4E-34 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 Gene3D G3DSA:1.10.1060.10 107 244 3.9E-53 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 2.0E-30 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 1.3E-97 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 2.9E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CS348_21905 b9c5120ec43016d767ed56174db53f5d 244 SUPERFAMILY SSF54292 4 106 2.16E-28 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_20005 db2849b443e12c1140a7551af65043ed 517 Gene3D G3DSA:3.30.300.310 423 517 8.1E-25 T 13-10-2018 CS348_20005 db2849b443e12c1140a7551af65043ed 517 Pfam PF13193 AMP-binding enzyme C-terminal domain 435 510 1.1E-13 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_20005 db2849b443e12c1140a7551af65043ed 517 ProSitePatterns PS00455 Putative AMP-binding domain signature. 178 189 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_20005 db2849b443e12c1140a7551af65043ed 517 Pfam PF00501 AMP-binding enzyme 17 426 3.0E-92 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_20005 db2849b443e12c1140a7551af65043ed 517 Gene3D G3DSA:3.40.50.12780 7 422 2.6E-109 T 13-10-2018 CS348_20005 db2849b443e12c1140a7551af65043ed 517 Hamap MF_01524 Crotonobetaine/carnitine--CoA ligase [caiC]. 1 517 80.181 T 13-10-2018 IPR023456 Crotonobetaine/carnitine-CoA ligase CaiC GO:0009437|GO:0016878|GO:0051108|GO:0051109 CS348_20005 db2849b443e12c1140a7551af65043ed 517 SUPERFAMILY SSF56801 9 517 9.42E-135 T 13-10-2018 CS348_15570 dffa287394ea5d16ea2a226024218bed 719 SUPERFAMILY SSF69369 67 286 5.75E-33 T 13-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 CS348_15570 dffa287394ea5d16ea2a226024218bed 719 Pfam PF06958 S-type Pyocin 440 576 1.3E-27 T 13-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 CS348_15570 dffa287394ea5d16ea2a226024218bed 719 SUPERFAMILY SSF69369 340 612 6.54E-46 T 13-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 CS348_15570 dffa287394ea5d16ea2a226024218bed 719 Pfam PF03515 Colicin-like bacteriocin tRNase domain 22 285 6.5E-49 T 13-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 CS348_11020 e06616e7b4a9e005c6ca9ab9c5f0e3dc 236 Gene3D G3DSA:1.20.120.700 8 159 2.1E-13 T 13-10-2018 CS348_11020 e06616e7b4a9e005c6ca9ab9c5f0e3dc 236 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 8 161 1.7E-55 T 13-10-2018 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 CS348_11020 e06616e7b4a9e005c6ca9ab9c5f0e3dc 236 SUPERFAMILY SSF89155 5 163 4.19E-33 T 13-10-2018 IPR036411 TorD-like superfamily CS348_11020 e06616e7b4a9e005c6ca9ab9c5f0e3dc 236 Pfam PF02613 Nitrate reductase delta subunit 40 156 5.7E-13 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_11020 e06616e7b4a9e005c6ca9ab9c5f0e3dc 236 Gene3D G3DSA:1.10.4070.10 69 150 2.1E-13 T 13-10-2018 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Gene3D G3DSA:3.40.50.740 429 626 1.0E-53 T 13-10-2018 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Gene3D G3DSA:2.40.40.20 670 814 7.8E-46 T 13-10-2018 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 61 79 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Pfam PF00384 Molybdopterin oxidoreductase 119 576 1.5E-111 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 SUPERFAMILY SSF50692 641 814 6.1E-41 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 517 534 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Gene3D G3DSA:3.40.50.740 54 328 1.0E-87 T 13-10-2018 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 56 116 4.7E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Pfam PF01568 Molydopterin dinucleotide binding domain 695 806 9.2E-29 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 SUPERFAMILY SSF53706 57 697 5.76E-182 T 13-10-2018 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 14 814 0.0 T 13-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 45 8.4E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 731 758 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 SMART SM00926 56 116 4.8E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_15395 f798d4e89b482b12c51335a2dfe6a00b 814 Gene3D G3DSA:3.40.228.10 346 420 4.3E-19 T 13-10-2018 CS348_24280 16930aaafa01872c7bae1af3d2f75b23 233 PIRSF PIRSF028451 4 227 3.9E-32 T 13-10-2018 IPR015996 Uncharacterised conserved protein UCP028451 CS348_24280 16930aaafa01872c7bae1af3d2f75b23 233 TIGRFAM TIGR02453 TIGR02453: TIGR02453 family protein 9 222 1.2E-33 T 13-10-2018 IPR012808 Conserved hypothetical protein CHP02453 CS348_24280 16930aaafa01872c7bae1af3d2f75b23 233 Pfam PF09365 Conserved hypothetical protein (DUF2461) 13 218 1.3E-46 T 13-10-2018 IPR012808 Conserved hypothetical protein CHP02453 CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 TIGRFAM TIGR02911 sulfite_red_B: sulfite reductase, subunit B 12 272 1.2E-142 T 13-10-2018 IPR014260 Sulphite reductase, subunit B CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 Gene3D G3DSA:3.40.50.80 107 234 8.3E-19 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 Gene3D G3DSA:2.40.30.10 16 102 5.2E-9 T 13-10-2018 CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 SUPERFAMILY SSF52343 100 265 1.01E-28 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 Pfam PF00175 Oxidoreductase NAD-binding domain 116 217 6.2E-20 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 235 264 5.1E-8 T 13-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 PIRSF PIRSF006816 13 272 3.4E-81 T 13-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 CS348_06805 e0a36ab49ecabf1e32d4f710e2b6face 272 SUPERFAMILY SSF63380 16 103 4.66E-17 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_01935 4b79c80de3e52b39326ecb20023e6b96 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 153 7.0E-70 T 13-10-2018 IPR013559 YheO-like CS348_01935 4b79c80de3e52b39326ecb20023e6b96 240 Pfam PF08348 YheO-like PAS domain 29 137 4.2E-36 T 13-10-2018 IPR013559 YheO-like CS348_01935 4b79c80de3e52b39326ecb20023e6b96 240 Pfam PF13309 HTH domain 171 228 3.3E-19 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain CS348_23135 0d8070a1ac7dfbe83ccf37de77a11222 309 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 9 302 21.131 T 13-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CS348_23135 0d8070a1ac7dfbe83ccf37de77a11222 309 Pfam PF01040 UbiA prenyltransferase family 27 279 3.4E-39 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CS348_23135 0d8070a1ac7dfbe83ccf37de77a11222 309 PIRSF PIRSF005355 1 307 3.9E-101 T 13-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 CS348_23135 0d8070a1ac7dfbe83ccf37de77a11222 309 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 18 301 9.4E-149 T 13-10-2018 CS348_12520 0942f1229e735046eede7168ce066f5e 108 SUPERFAMILY SSF103481 7 106 3.14E-6 T 13-10-2018 CS348_12520 0942f1229e735046eede7168ce066f5e 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 107 2.2E-46 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 CS348_12520 0942f1229e735046eede7168ce066f5e 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 22.893 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 Hamap MF_01498 DNA repair protein RadA [radA]. 22 458 43.307 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 Pfam PF13541 Subunit ChlI of Mg-chelatase 348 433 1.1E-9 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 127 144 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 216 244 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 177 201 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 325 348 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 11 35 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 86 114 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 PRINTS PR01874 DNA repair protein radA signature 251 277 1.6E-93 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 SUPERFAMILY SSF54211 258 457 1.25E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 SUPERFAMILY SSF52540 71 291 9.02E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 Gene3D G3DSA:3.40.50.300 69 282 1.6E-40 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 Pfam PF13481 AAA domain 88 225 1.6E-14 T 13-10-2018 CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 SMART SM00382 94 248 5.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 Gene3D G3DSA:3.30.230.10 309 459 2.7E-22 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_20475 db3e4ff0ea8afdefe0a4678ba3084bad 460 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 454 8.6E-239 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CS348_18790 455a64c5940e66e226d358a371838608 814 SUPERFAMILY SSF56645 116 355 2.09E-46 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CS348_18790 455a64c5940e66e226d358a371838608 814 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 237 328 5.9E-9 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CS348_18790 455a64c5940e66e226d358a371838608 814 Gene3D G3DSA:1.20.140.10 360 505 1.6E-102 T 13-10-2018 CS348_18790 455a64c5940e66e226d358a371838608 814 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 147 232 2.5E-16 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CS348_18790 455a64c5940e66e226d358a371838608 814 SUPERFAMILY SSF47203 360 515 4.83E-21 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CS348_18790 455a64c5940e66e226d358a371838608 814 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 3.5E-116 T 13-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 CS348_18790 455a64c5940e66e226d358a371838608 814 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 504 3.7E-12 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CS348_18790 455a64c5940e66e226d358a371838608 814 Gene3D G3DSA:2.40.110.10 236 359 1.6E-102 T 13-10-2018 CS348_18790 455a64c5940e66e226d358a371838608 814 Gene3D G3DSA:1.10.540.10 122 235 1.6E-102 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CS348_12575 ed392808dd90431bf189d753fe82be57 300 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 25 295 6.3E-67 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 CS348_12575 ed392808dd90431bf189d753fe82be57 300 Gene3D G3DSA:3.40.190.120 125 239 1.4E-90 T 13-10-2018 CS348_12575 ed392808dd90431bf189d753fe82be57 300 SUPERFAMILY SSF53850 25 299 5.07E-61 T 13-10-2018 CS348_12575 ed392808dd90431bf189d753fe82be57 300 Gene3D G3DSA:3.40.190.10 29 295 1.4E-90 T 13-10-2018 CS348_12230 05311ca31c470958b34a478a414af7a4 400 Gene3D G3DSA:3.40.640.10 61 286 9.2E-126 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_12230 05311ca31c470958b34a478a414af7a4 400 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 3 387 3.2E-115 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 CS348_12230 05311ca31c470958b34a478a414af7a4 400 SUPERFAMILY SSF53383 2 388 1.63E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_12230 05311ca31c470958b34a478a414af7a4 400 Gene3D G3DSA:3.90.1150.10 28 382 9.2E-126 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_12230 05311ca31c470958b34a478a414af7a4 400 Pfam PF00155 Aminotransferase class I and II 38 383 5.7E-37 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_02415 7dae321b597f9bea4d73f0607c6d0408 88 SUPERFAMILY SSF159871 3 88 9.16E-25 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_02415 7dae321b597f9bea4d73f0607c6d0408 88 Gene3D G3DSA:3.30.1660.10 19 88 4.7E-22 T 13-10-2018 IPR025543 Dodecin-like CS348_02415 7dae321b597f9bea4d73f0607c6d0408 88 Pfam PF07338 Protein of unknown function (DUF1471) 35 88 4.4E-23 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_17205 04ab847c0ac6d5b8569ccf010f250f9f 248 Gene3D G3DSA:3.40.30.10 104 248 2.5E-43 T 13-10-2018 CS348_17205 04ab847c0ac6d5b8569ccf010f250f9f 248 Gene3D G3DSA:3.10.450.70 20 89 1.9E-31 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CS348_17205 04ab847c0ac6d5b8569ccf010f250f9f 248 SUPERFAMILY SSF52833 83 246 4.36E-42 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_17205 04ab847c0ac6d5b8569ccf010f250f9f 248 SUPERFAMILY SSF54423 19 78 1.83E-22 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CS348_17205 04ab847c0ac6d5b8569ccf010f250f9f 248 Pfam PF13098 Thioredoxin-like domain 114 244 3.9E-18 T 13-10-2018 IPR012336 Thioredoxin-like fold CS348_19105 eea48c6ac2c1782c8db43ebb32afa10f 72 Pfam PF06786 Uncharacterised protein family (UPF0253) 8 71 2.2E-34 T 13-10-2018 IPR009624 Uncharacterised protein family UPF0253 CS348_19105 eea48c6ac2c1782c8db43ebb32afa10f 72 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 7 72 4.0E-30 T 13-10-2018 IPR009624 Uncharacterised protein family UPF0253 CS348_19105 eea48c6ac2c1782c8db43ebb32afa10f 72 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 7 72 26.748 T 13-10-2018 IPR009624 Uncharacterised protein family UPF0253 CS348_07705 eefe63d56c544cf8cbc9d5a724dc0b1c 183 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 42.51 T 13-10-2018 IPR022990 Uncharacterised protein family UPF0115 CS348_07705 eefe63d56c544cf8cbc9d5a724dc0b1c 183 Pfam PF01713 Smr domain 98 172 1.1E-17 T 13-10-2018 IPR002625 Smr domain CS348_07705 eefe63d56c544cf8cbc9d5a724dc0b1c 183 Gene3D G3DSA:3.30.1370.110 49 176 1.4E-28 T 13-10-2018 CS348_07705 eefe63d56c544cf8cbc9d5a724dc0b1c 183 SMART SM00463 95 173 8.7E-23 T 13-10-2018 IPR002625 Smr domain CS348_07705 eefe63d56c544cf8cbc9d5a724dc0b1c 183 SUPERFAMILY SSF160443 96 170 2.35E-9 T 13-10-2018 IPR036063 Smr domain superfamily CS348_13565 c72433efd9c41fdd43c8d71da2c599cb 663 Pfam PF03406 Phage tail fibre repeat 172 212 7.6E-16 T 13-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 CS348_13565 c72433efd9c41fdd43c8d71da2c599cb 663 Pfam PF12571 Phage tail-collar fibre protein 6 152 9.1E-49 T 13-10-2018 IPR022225 Phage tail fibre protein CS348_13565 c72433efd9c41fdd43c8d71da2c599cb 663 Gene3D G3DSA:2.20.70.120 569 599 6.9E-6 T 13-10-2018 CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 SUPERFAMILY SSF52833 1 78 1.21E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 ProSitePatterns PS00195 Glutaredoxin active site. 3 18 - T 13-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 TIGRFAM TIGR02182 GRXB: glutaredoxin, GrxB family 2 210 3.3E-99 T 13-10-2018 IPR011901 Glutaredoxin-2 GO:0005829|GO:0097573 CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 Gene3D G3DSA:1.20.1050.10 90 215 1.1E-49 T 13-10-2018 CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 SUPERFAMILY SSF47616 76 215 9.18E-49 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 74 5.5E-11 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 Gene3D G3DSA:3.40.30.10 8 85 2.3E-40 T 13-10-2018 CS348_14625 845ca3ee09b0d39accc70b40f3526ec5 215 Pfam PF04399 Glutaredoxin 2, C terminal domain 86 214 3.1E-49 T 13-10-2018 IPR007494 Glutaredoxin 2, C-terminal CS348_08970 a2060162da6a141297bcc9713b6a1586 453 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_08970 a2060162da6a141297bcc9713b6a1586 453 Gene3D G3DSA:2.40.30.10 355 441 1.6E-8 T 13-10-2018 CS348_08970 a2060162da6a141297bcc9713b6a1586 453 Pfam PF01136 Peptidase family U32 75 343 3.1E-97 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_08970 a2060162da6a141297bcc9713b6a1586 453 Pfam PF16325 Peptidase family U32 C-terminal domain 359 440 3.8E-21 T 13-10-2018 IPR032525 Peptidase family U32, C-terminal CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 125 136 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 Pfam PF13247 4Fe-4S dicluster domain 84 181 8.8E-24 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 Pfam PF00037 4Fe-4S binding domain 40 56 1.7E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 Gene3D G3DSA:3.30.70.20 37 212 5.0E-58 T 13-10-2018 CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 Gene3D G3DSA:3.30.70.20 98 151 5.0E-58 T 13-10-2018 CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 222 5.6E-122 T 13-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein CS348_22285 c0bb3f82054ff414f6ae94ee1383954d 223 SUPERFAMILY SSF54862 36 215 1.15E-61 T 13-10-2018 CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 SMART SM00650 25 198 2.2E-83 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 5.1E-89 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 265 7.1E-87 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 Gene3D G3DSA:3.40.50.150 1 200 2.5E-65 T 13-10-2018 CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 SUPERFAMILY SSF53335 17 266 1.51E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 Gene3D G3DSA:1.10.8.100 201 268 2.6E-31 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 CS348_19890 ab941f34bf1ff348bfbd79faae0ecef7 273 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 54.659 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CS348_12110 5083e27d843c8d3367b94dd9f46f2af0 462 TIGRFAM TIGR00886 2A0108: nitrite transporter 34 415 1.2E-102 T 13-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 CS348_12110 5083e27d843c8d3367b94dd9f46f2af0 462 Gene3D G3DSA:1.20.1250.20 1 235 1.1E-84 T 13-10-2018 CS348_12110 5083e27d843c8d3367b94dd9f46f2af0 462 Gene3D G3DSA:1.20.1250.20 236 462 4.1E-68 T 13-10-2018 CS348_12110 5083e27d843c8d3367b94dd9f46f2af0 462 SUPERFAMILY SSF103473 13 460 4.84E-37 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12110 5083e27d843c8d3367b94dd9f46f2af0 462 Pfam PF07690 Major Facilitator Superfamily 43 373 2.6E-11 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_15955 80826185dec8b30034aff42e9420439c 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 13-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 CS348_15955 80826185dec8b30034aff42e9420439c 87 Gene3D G3DSA:3.40.30.10 3 85 7.9E-26 T 13-10-2018 CS348_15955 80826185dec8b30034aff42e9420439c 87 Pfam PF00462 Glutaredoxin 4 69 4.9E-17 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CS348_15955 80826185dec8b30034aff42e9420439c 87 SUPERFAMILY SSF52833 4 82 5.16E-21 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_15955 80826185dec8b30034aff42e9420439c 87 PRINTS PR00160 Glutaredoxin signature 3 21 6.0E-12 T 13-10-2018 IPR014025 Glutaredoxin subgroup CS348_15955 80826185dec8b30034aff42e9420439c 87 PRINTS PR00160 Glutaredoxin signature 66 79 6.0E-12 T 13-10-2018 IPR014025 Glutaredoxin subgroup CS348_15955 80826185dec8b30034aff42e9420439c 87 PRINTS PR00160 Glutaredoxin signature 52 65 6.0E-12 T 13-10-2018 IPR014025 Glutaredoxin subgroup CS348_15955 80826185dec8b30034aff42e9420439c 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 2.4E-52 T 13-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 CS348_23025 38258c593b2013a9af01e2106463e285 883 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 537 549 - T 13-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 883 18.399 T 13-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 883 3.9E-295 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 SUPERFAMILY SSF51621 6 883 0.0 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_23025 38258c593b2013a9af01e2106463e285 883 Gene3D G3DSA:1.20.1440.90 300 389 9.4E-27 T 13-10-2018 CS348_23025 38258c593b2013a9af01e2106463e285 883 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 13-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 709 735 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 577 606 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 386 406 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 535 555 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_23025 38258c593b2013a9af01e2106463e285 883 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 1.7E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CS348_12925 7fd0788084b15d883804f677c65f8020 341 Gene3D G3DSA:1.10.260.40 3 59 6.2E-26 T 13-10-2018 CS348_12925 7fd0788084b15d883804f677c65f8020 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 1.5E-40 T 13-10-2018 CS348_12925 7fd0788084b15d883804f677c65f8020 341 Gene3D G3DSA:3.40.50.2300 162 324 5.4E-104 T 13-10-2018 CS348_12925 7fd0788084b15d883804f677c65f8020 341 SUPERFAMILY SSF53822 60 340 5.89E-94 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_12925 7fd0788084b15d883804f677c65f8020 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 5.4E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12925 7fd0788084b15d883804f677c65f8020 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 CS348_12925 7fd0788084b15d883804f677c65f8020 341 SUPERFAMILY SSF47413 1 59 1.29E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_12925 7fd0788084b15d883804f677c65f8020 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 58.576 T 13-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 CS348_12925 7fd0788084b15d883804f677c65f8020 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.7E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12925 7fd0788084b15d883804f677c65f8020 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.7E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_12925 7fd0788084b15d883804f677c65f8020 341 Gene3D G3DSA:3.40.50.2300 69 323 5.4E-104 T 13-10-2018 CS348_12925 7fd0788084b15d883804f677c65f8020 341 SMART SM00354 1 71 3.0E-37 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 Hamap MF_00492 Transaldolase [tal]. 2 317 52.095 T 13-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 SUPERFAMILY SSF51569 1 316 6.8E-118 T 13-10-2018 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 6.0E-165 T 13-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 313 5.7E-103 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_20330 e234ed70b5479c8004d0872cd9255c47 317 Gene3D G3DSA:3.20.20.70 2 317 1.3E-151 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_07190 151fa4d5c96b21c3df0b5f23702239f3 432 Gene3D G3DSA:3.40.710.10 23 410 5.9E-82 T 13-10-2018 CS348_07190 151fa4d5c96b21c3df0b5f23702239f3 432 Hamap MF_01034 UPF0214 protein YfeW [yfeW]. 1 432 72.279 T 13-10-2018 IPR022849 Peptidase S12, UPF0214, YfeW-type CS348_07190 151fa4d5c96b21c3df0b5f23702239f3 432 Pfam PF00144 Beta-lactamase 45 409 1.2E-62 T 13-10-2018 IPR001466 Beta-lactamase-related CS348_07190 151fa4d5c96b21c3df0b5f23702239f3 432 SUPERFAMILY SSF56601 37 402 1.05E-73 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_09120 660f71b262e213478ed348f4987933f6 321 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 233 1.3E-74 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_09120 660f71b262e213478ed348f4987933f6 321 SUPERFAMILY SSF51735 1 318 4.29E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09120 660f71b262e213478ed348f4987933f6 321 Hamap MF_00956 GDP-L-fucose synthase [fcl]. 3 314 49.006 T 13-10-2018 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase GO:0009226|GO:0016491 KEGG: 00051+1.1.1.271|KEGG: 00520+1.1.1.271|MetaCyc: PWY-66|Reactome: R-HSA-6787639 CS348_09120 660f71b262e213478ed348f4987933f6 321 Gene3D G3DSA:3.90.25.10 168 312 6.2E-120 T 13-10-2018 CS348_09120 660f71b262e213478ed348f4987933f6 321 Gene3D G3DSA:3.40.50.720 6 303 6.2E-120 T 13-10-2018 CS348_10985 c69150d10ea3572e35fc4a58d1640faa 474 Gene3D G3DSA:2.40.160.160 112 354 8.4E-78 T 13-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily CS348_10985 c69150d10ea3572e35fc4a58d1640faa 474 Pfam PF11924 Inverse autotransporter, beta-domain 68 346 1.3E-99 T 13-10-2018 IPR024519 Inverse autotransporter, beta-domain CS348_04590 de466de2b09164edd8e8ff9a140c1ee0 192 Pfam PF12822 ECF transporter, substrate-specific component 10 173 2.7E-11 T 13-10-2018 IPR024529 ECF transporter, substrate-specific component GO:0005215 CS348_04590 de466de2b09164edd8e8ff9a140c1ee0 192 Gene3D G3DSA:1.10.1760.20 2 187 1.5E-19 T 13-10-2018 CS348_21415 8ab046d89458972f0f161b8d901579cb 450 Gene3D G3DSA:3.30.2290.10 11 236 6.9E-97 T 13-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal CS348_21415 8ab046d89458972f0f161b8d901579cb 450 SUPERFAMILY SSF111283 17 449 1.19E-130 T 13-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 CS348_21415 8ab046d89458972f0f161b8d901579cb 450 Pfam PF01523 Putative modulator of DNA gyrase 36 326 8.9E-61 T 13-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 CS348_23310 2e54cc13e2ee767a1d17afb036ce5ed9 51 Pfam PF06528 Phage P2 GpE 13 48 1.1E-20 T 13-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 6.6E-23 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 6.3E-30 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 Gene3D G3DSA:3.20.20.60 234 575 3.0E-128 T 13-10-2018 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 3.5E-31 T 13-10-2018 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 3.5E-31 T 13-10-2018 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 3.5E-31 T 13-10-2018 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 3.5E-31 T 13-10-2018 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 Gene3D G3DSA:3.50.30.10 4 233 9.5E-84 T 13-10-2018 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 PIRSF PIRSF000732 1 574 9.2E-218 T 13-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 SUPERFAMILY SSF52009 125 245 3.4E-37 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 Gene3D G3DSA:1.10.274.10 21 146 9.5E-84 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 13-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 SUPERFAMILY SSF47831 23 143 4.84E-34 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 SUPERFAMILY SSF51621 249 549 3.4E-110 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 1.9E-271 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 13-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 CS348_07405 6ea581b4a9ee036da54fd98d84cbd731 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 541 8.8E-127 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CS348_10720 62dc7b6f32bd99dde0c998bff83857e0 193 Pfam PF03843 Outer membrane lipoprotein Slp family 20 168 2.4E-48 T 13-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 CS348_10720 62dc7b6f32bd99dde0c998bff83857e0 193 PIRSF PIRSF004982 5 189 3.4E-56 T 13-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 CS348_10720 62dc7b6f32bd99dde0c998bff83857e0 193 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 7 189 3.4E-85 T 13-10-2018 IPR004658 Outer membrane lipoprotein Slp GO:0019867 CS348_09175 1d406b7a88bbbaffdeb9f99344a11fe3 297 TIGRFAM TIGR01105 galF: regulatory protein GalF 1 297 4.3E-208 T 13-10-2018 IPR005774 UTP-glucose pyrophosphorylase, regulatory subunit GO:0006011|GO:0030234 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 CS348_09175 1d406b7a88bbbaffdeb9f99344a11fe3 297 SUPERFAMILY SSF53448 2 284 1.28E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09175 1d406b7a88bbbaffdeb9f99344a11fe3 297 Gene3D G3DSA:3.90.550.10 2 296 5.6E-76 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09175 1d406b7a88bbbaffdeb9f99344a11fe3 297 Pfam PF00483 Nucleotidyl transferase 5 274 1.3E-22 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 189 266 1.2E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 840 918 4.4E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2861 2934 5.3E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 756 833 1.3E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1651 1726 2.6E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 483 558 5.2E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 674 747 8.1E-11 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2673 2747 2.1E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Pfam PF12245 Bacterial Ig-like domain (group 3) 1517 1539 0.17 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Pfam PF12245 Bacterial Ig-like domain (group 3) 2226 2244 4.4 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Pfam PF12245 Bacterial Ig-like domain (group 3) 2113 2146 0.15 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Pfam PF12245 Bacterial Ig-like domain (group 3) 443 476 0.084 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Pfam PF12245 Bacterial Ig-like domain (group 3) 2010 2036 0.88 T 13-10-2018 IPR022038 Bacterial Ig-like domain CS348_06355 844abc41614b1673b64ef28193c5c492 3824 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 3741 3821 8.6E-17 T 13-10-2018 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1740 1840 1.4E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1842 1943 2.2E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 933 1031 5.7E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1347 1446 4.9E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 381 482 2.9E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2469 2570 4.8E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1243 1343 2.4E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2264 2363 1.0E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2764 2860 2.3E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2053 2154 1.0E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2574 2672 8.1E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1555 1650 5.1E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 278 378 3.3E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1038 1138 1.2E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 572 673 4.1E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2364 2465 2.4E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1140 1238 6.5E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1448 1549 1.2E-15 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 2157 2258 4.5E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 Gene3D G3DSA:2.60.40.10 1948 2048 8.9E-18 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06355 844abc41614b1673b64ef28193c5c492 3824 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3385 3424 0.0014 T 13-10-2018 IPR010221 VCBS repeat CS348_06355 844abc41614b1673b64ef28193c5c492 3824 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3642 3691 0.0012 T 13-10-2018 IPR010221 VCBS repeat CS348_01330 905c9f281422545e3be53b50e6b37f43 419 SUPERFAMILY SSF103473 31 409 1.11E-43 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01330 905c9f281422545e3be53b50e6b37f43 419 Pfam PF07690 Major Facilitator Superfamily 39 315 4.5E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_01330 905c9f281422545e3be53b50e6b37f43 419 Hamap MF_01118 Uncharacterized MFS-type transporter YhhS [yhhS]. 21 410 41.393 T 13-10-2018 IPR023008 Uncharacterized MFS-type transporter YhhS-like CS348_01330 905c9f281422545e3be53b50e6b37f43 419 Gene3D G3DSA:1.20.1250.20 30 408 1.4E-36 T 13-10-2018 CS348_21105 160e25d2b0a8f82f9f8ae4f425bc26f0 202 PIRSF PIRSF021719 1 202 2.9E-79 T 13-10-2018 IPR009412 Protein of unknown function DUF1062 CS348_21105 160e25d2b0a8f82f9f8ae4f425bc26f0 202 Pfam PF06353 Protein of unknown function (DUF1062) 36 167 9.1E-42 T 13-10-2018 IPR009412 Protein of unknown function DUF1062 CS348_25850 3be6e1f3080104dfe929ae5914f57985 199 SUPERFAMILY SSF52833 61 111 6.78E-5 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_25850 3be6e1f3080104dfe929ae5914f57985 199 Pfam PF13728 F plasmid transfer operon protein 64 171 1.8E-7 T 13-10-2018 IPR039555 F plasmid transfer operon protein CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Gene3D G3DSA:1.20.120.960 39 146 9.1E-10 T 13-10-2018 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 SMART SM00387 465 559 5.2E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Pfam PF07730 Histidine kinase 361 425 6.4E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Pfam PF00672 HAMP domain 176 223 9.5E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 SUPERFAMILY SSF158472 176 225 1.14E-5 T 13-10-2018 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 SUPERFAMILY SSF55874 431 555 3.41E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 SMART SM00304 174 227 3.8E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Gene3D G3DSA:3.30.565.10 425 562 8.7E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Gene3D G3DSA:1.10.287.130 172 276 3.0E-6 T 13-10-2018 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 468 555 1.1E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 128 6.5E-22 T 13-10-2018 IPR029095 NarX-like, N-terminal CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 PIRSF PIRSF003167 288 566 2.9E-102 T 13-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_07180 a9114ac520e50a1ad7e03a2541bb53c4 566 PIRSF PIRSF003167 1 298 1.3E-74 T 13-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_12085 76e2454c754eb730a14ee49f79e9011a 297 Pfam PF02567 Phenazine biosynthesis-like protein 8 290 1.2E-86 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CS348_12085 76e2454c754eb730a14ee49f79e9011a 297 Gene3D G3DSA:3.10.310.10 1 125 1.8E-52 T 13-10-2018 CS348_12085 76e2454c754eb730a14ee49f79e9011a 297 Gene3D G3DSA:3.10.310.10 126 284 3.6E-58 T 13-10-2018 CS348_12085 76e2454c754eb730a14ee49f79e9011a 297 PIRSF PIRSF016184 1 295 1.4E-91 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CS348_12085 76e2454c754eb730a14ee49f79e9011a 297 SUPERFAMILY SSF54506 1 294 9.42E-66 T 13-10-2018 CS348_12085 76e2454c754eb730a14ee49f79e9011a 297 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 295 2.4E-118 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Gene3D G3DSA:3.90.100.10 595 713 3.7E-46 T 13-10-2018 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Gene3D G3DSA:3.40.640.10 130 424 3.7E-90 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Gene3D G3DSA:3.90.1150.10 425 594 2.3E-70 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 SUPERFAMILY SSF55904 567 707 1.83E-43 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Gene3D G3DSA:3.40.50.2300 1 129 7.6E-60 T 13-10-2018 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 SUPERFAMILY SSF53383 130 562 1.5E-99 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 4.0E-47 T 13-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 544 2.5E-192 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 1.5E-27 T 13-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 CS348_19125 2d95f06910a1d1ddf8dd0acdec50bb5c 713 PIRSF PIRSF009393 1 712 6.3E-278 T 13-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 CS348_02560 b98195405bf48cfddd14be88a26c41fa 417 Gene3D G3DSA:1.10.4160.10 3 416 3.1E-49 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily CS348_02560 b98195405bf48cfddd14be88a26c41fa 417 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 11 397 2.8E-69 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 24.078 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 13-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 40.403 T 13-10-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 Pfam PF01202 Shikimate kinase 11 168 2.3E-47 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 SUPERFAMILY SSF52540 1 168 5.79E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 PRINTS PR01100 Shikimate kinase family signature 95 112 1.9E-23 T 13-10-2018 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 PRINTS PR01100 Shikimate kinase family signature 74 83 1.9E-23 T 13-10-2018 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 PRINTS PR01100 Shikimate kinase family signature 29 42 1.9E-23 T 13-10-2018 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 PRINTS PR01100 Shikimate kinase family signature 57 65 1.9E-23 T 13-10-2018 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 PRINTS PR01100 Shikimate kinase family signature 5 20 1.9E-23 T 13-10-2018 CS348_18425 dc4c1c021ebce5813ed7815d5188989e 181 Gene3D G3DSA:3.40.50.300 1 169 7.6E-52 T 13-10-2018 CS348_06490 b22e326dcdd0eeb1f266b24f1c3a9ec1 243 Gene3D G3DSA:3.60.140.10 1 243 3.2E-106 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily CS348_06490 b22e326dcdd0eeb1f266b24f1c3a9ec1 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 1.7E-80 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase CS348_06490 b22e326dcdd0eeb1f266b24f1c3a9ec1 243 SUPERFAMILY SSF64438 3 242 3.48E-90 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic CS348_06490 b22e326dcdd0eeb1f266b24f1c3a9ec1 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 242 1.4E-79 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase CS348_06995 fd1a963fb558b0830af7316e9e23384f 24 Pfam PF03400 IS1 transposase 1 23 1.3E-6 T 13-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 343 38.221 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 4.5E-42 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 PRINTS PR00423 Cell division protein FtsZ signature 188 210 2.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 PRINTS PR00423 Cell division protein FtsZ signature 97 117 2.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 PRINTS PR00423 Cell division protein FtsZ signature 211 232 2.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 PRINTS PR00423 Cell division protein FtsZ signature 125 146 2.5E-52 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 Gene3D G3DSA:3.40.50.1440 9 316 4.9E-117 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 Pfam PF12327 FtsZ family, C-terminal domain 221 315 2.4E-37 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 SMART SM00865 206 324 3.4E-56 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 SMART SM00864 12 204 4.5E-111 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 SUPERFAMILY SSF55307 203 319 7.33E-43 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 SUPERFAMILY SSF52490 12 207 1.83E-69 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 CS348_19670 574c9f0011ebc34148fdf6c2a505b1fb 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 334 8.3E-142 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 CS348_14610 a7a66883740d29ab7a909c7ba2795ffe 215 Gene3D G3DSA:1.10.10.10 95 174 7.0E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14610 a7a66883740d29ab7a909c7ba2795ffe 215 SUPERFAMILY SSF46785 90 172 4.28E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_14610 a7a66883740d29ab7a909c7ba2795ffe 215 Gene3D G3DSA:1.10.10.10 1 89 7.5E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14610 a7a66883740d29ab7a909c7ba2795ffe 215 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 211 35.006 T 13-10-2018 IPR007432 Protein of unknown function DUF480 CS348_14610 a7a66883740d29ab7a909c7ba2795ffe 215 SUPERFAMILY SSF46785 2 84 4.35E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_14610 a7a66883740d29ab7a909c7ba2795ffe 215 Pfam PF04337 Protein of unknown function, DUF480 5 158 7.8E-64 T 13-10-2018 IPR007432 Protein of unknown function DUF480 CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 Gene3D G3DSA:1.20.120.530 97 236 1.9E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 SUPERFAMILY SSF48008 95 234 2.07E-20 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 SUPERFAMILY SSF46785 6 76 4.2E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 SMART SM00895 99 227 4.0E-17 T 13-10-2018 IPR011711 GntR, C-terminal CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 Pfam PF07729 FCD domain 99 226 1.1E-17 T 13-10-2018 IPR011711 GntR, C-terminal CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.5E-25 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 SMART SM00345 15 74 3.0E-29 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.9E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.9E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_19565 d17a68759aac9392a32210ddb7ffbee7 254 Gene3D G3DSA:1.10.10.10 1 75 1.4E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16990 c02ea549618e0074db721f629d40a8db 196 Gene3D G3DSA:3.30.160.150 19 169 3.1E-68 T 13-10-2018 CS348_16990 c02ea549618e0074db721f629d40a8db 196 Pfam PF04390 Lipopolysaccharide-assembly 35 159 7.2E-15 T 13-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 CS348_16990 c02ea549618e0074db721f629d40a8db 196 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 4 164 26.569 T 13-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 Gene3D G3DSA:3.20.20.100 1 267 5.1E-90 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_19020 376b00c96ee60a755f1c69729987cba2 267 PIRSF PIRSF000097 1 265 4.0E-67 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 3.4E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 3.4E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 3.4E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 3.4E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 3.4E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 SUPERFAMILY SSF51430 2 257 7.86E-82 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_19020 376b00c96ee60a755f1c69729987cba2 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CS348_19020 376b00c96ee60a755f1c69729987cba2 267 Pfam PF00248 Aldo/keto reductase family 8 250 5.9E-49 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_19020 376b00c96ee60a755f1c69729987cba2 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 Gene3D G3DSA:3.90.226.10 324 549 5.2E-55 T 13-10-2018 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 SUPERFAMILY SSF52096 194 537 1.36E-68 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 SUPERFAMILY SSF50156 219 343 4.23E-16 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 Pfam PF03572 Peptidase family S41 356 529 9.5E-53 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 SMART SM00228 246 323 7.7E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 536 667 1.2E-39 T 13-10-2018 IPR020992 Tail specific protease, C-terminal CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 194 551 3.8E-129 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 240 320 1.2E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 Gene3D G3DSA:2.30.42.10 235 320 9.5E-13 T 13-10-2018 CS348_10585 d1656b0dbf8021622f1dade85e9ac8be 682 SMART SM00245 326 531 3.9E-80 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CS348_12565 519cd3c645954a6ff7e99856559e1eee 204 Hamap MF_00940 Tat proofreading chaperone DmsD [dmsD]. 5 204 43.248 T 13-10-2018 IPR028611 Tat proofreading chaperone DmsD GO:0005048 CS348_12565 519cd3c645954a6ff7e99856559e1eee 204 Gene3D G3DSA:1.10.3480.10 1 204 3.1E-62 T 13-10-2018 CS348_12565 519cd3c645954a6ff7e99856559e1eee 204 Pfam PF02613 Nitrate reductase delta subunit 42 163 7.8E-22 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_12565 519cd3c645954a6ff7e99856559e1eee 204 PIRSF PIRSF004690 2 204 6.7E-65 T 13-10-2018 IPR026269 Tat proofreading chaperone DmsD-type CS348_12565 519cd3c645954a6ff7e99856559e1eee 204 SUPERFAMILY SSF89155 3 200 1.57E-59 T 13-10-2018 IPR036411 TorD-like superfamily CS348_07965 78a8f697578134f57c5b13f2cba3b3d1 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 6.6E-59 T 13-10-2018 IPR007334 Uncharacterised protein family UPF0208 CS348_07965 78a8f697578134f57c5b13f2cba3b3d1 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 37.086 T 13-10-2018 IPR007334 Uncharacterised protein family UPF0208 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 PIRSF PIRSF006004 16 381 6.2E-148 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 SUPERFAMILY SSF102114 120 330 3.27E-14 T 13-10-2018 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 Gene3D G3DSA:3.20.20.70 83 353 1.9E-115 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 Gene3D G3DSA:1.10.150.530 1 82 2.0E-35 T 13-10-2018 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 21 368 75.056 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 Pfam PF04055 Radical SAM superfamily 124 293 2.1E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_06930 7612978723cdaf904f3c2e230768f9a5 388 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 19 373 5.2E-177 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 CS348_05900 a7f994c77022ef6460dc74eb6a701028 166 Gene3D G3DSA:1.10.10.10 8 69 1.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05900 a7f994c77022ef6460dc74eb6a701028 166 Hamap MF_01114 Regulatory protein RecX [recX]. 2 166 13.66 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CS348_05900 a7f994c77022ef6460dc74eb6a701028 166 Pfam PF02631 RecX family 50 162 7.1E-31 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CS348_05900 a7f994c77022ef6460dc74eb6a701028 166 Gene3D G3DSA:1.10.10.10 116 166 1.7E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05900 a7f994c77022ef6460dc74eb6a701028 166 Gene3D G3DSA:1.10.10.10 70 115 1.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_19970 424b2fdc5608811a81a871119c7070ba 428 Pfam PF01494 FAD binding domain 7 189 5.5E-10 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_19970 424b2fdc5608811a81a871119c7070ba 428 SUPERFAMILY SSF54373 180 283 1.02E-22 T 13-10-2018 CS348_19970 424b2fdc5608811a81a871119c7070ba 428 SUPERFAMILY SSF51905 4 388 1.56E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_19970 424b2fdc5608811a81a871119c7070ba 428 Gene3D G3DSA:3.50.50.60 1 420 4.2E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_19970 424b2fdc5608811a81a871119c7070ba 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 2.9E-8 T 13-10-2018 CS348_19970 424b2fdc5608811a81a871119c7070ba 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 294 309 2.9E-8 T 13-10-2018 CS348_19970 424b2fdc5608811a81a871119c7070ba 428 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.9E-8 T 13-10-2018 CS348_16510 4fb240c20be71b69a89211c94dc41469 312 Hamap MF_00552 Zinc transporter ZitB [zitB]. 3 312 63.823 T 13-10-2018 IPR023500 Zinc transporter ZitB GO:0005385|GO:0006829|GO:0016020 CS348_16510 4fb240c20be71b69a89211c94dc41469 312 Gene3D G3DSA:1.20.1510.10 17 213 6.7E-50 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CS348_16510 4fb240c20be71b69a89211c94dc41469 312 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 18 292 1.2E-94 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CS348_16510 4fb240c20be71b69a89211c94dc41469 312 Pfam PF01545 Cation efflux family 21 213 1.9E-51 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CS348_16510 4fb240c20be71b69a89211c94dc41469 312 SUPERFAMILY SSF161111 16 214 2.09E-60 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CS348_16510 4fb240c20be71b69a89211c94dc41469 312 SUPERFAMILY SSF160240 230 291 1.18E-8 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CS348_01230 888ea49e5368b0b3aaca47f479b04615 325 SUPERFAMILY SSF53697 7 325 1.21E-59 T 13-10-2018 CS348_01230 888ea49e5368b0b3aaca47f479b04615 325 Pfam PF01380 SIS domain 22 118 4.6E-11 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_01230 888ea49e5368b0b3aaca47f479b04615 325 Gene3D G3DSA:1.10.10.2240 154 305 1.3E-65 T 13-10-2018 CS348_01230 888ea49e5368b0b3aaca47f479b04615 325 Gene3D G3DSA:3.40.50.10490 1 151 1.8E-31 T 13-10-2018 CS348_01230 888ea49e5368b0b3aaca47f479b04615 325 PIRSF PIRSF009290 1 325 1.5E-85 T 13-10-2018 IPR024713 Fructosamine deglycase FrlB CS348_01230 888ea49e5368b0b3aaca47f479b04615 325 Gene3D G3DSA:3.40.50.12570 190 283 1.3E-65 T 13-10-2018 CS348_13610 e23d1f2716d6a9c3f0a72e147b831e8b 381 Pfam PF05954 Phage late control gene D protein (GPD) 128 361 2.5E-21 T 13-10-2018 CS348_13610 e23d1f2716d6a9c3f0a72e147b831e8b 381 SUPERFAMILY SSF69279 46 201 4.68E-22 T 13-10-2018 CS348_21700 87d5b4d1ce42fdbe8d00820f4028e340 101 Gene3D G3DSA:3.40.50.2300 2 93 4.3E-20 T 13-10-2018 CS348_21700 87d5b4d1ce42fdbe8d00820f4028e340 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 4 79 7.9E-14 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_21700 87d5b4d1ce42fdbe8d00820f4028e340 101 SUPERFAMILY SSF52794 3 95 6.8E-18 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 Pfam PF02142 MGS-like domain 26 118 1.6E-18 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 1.8E-74 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 PIRSF PIRSF006614 8 151 8.7E-67 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 SUPERFAMILY SSF52335 2 147 9.81E-59 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 Gene3D G3DSA:3.40.50.1380 1 152 1.6E-69 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 33.266 T 13-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 13-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 CS348_15115 6d9bfc8fa470ccbf271020e9dc74fead 152 SMART SM00851 25 118 4.3E-25 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CS348_10410 96bb0d24549bdfaa7aede569ec629c20 177 Pfam PF10721 Protein of unknown function (DUF2514) 12 170 1.6E-42 T 13-10-2018 IPR019659 Protein of unknown function DUF2514 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Pfam PF08206 Ribonuclease B OB domain 24 80 4.1E-19 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Gene3D G3DSA:2.40.50.640 83 155 2.0E-35 T 13-10-2018 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.39 T 13-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Gene3D G3DSA:2.40.50.140 558 644 2.1E-38 T 13-10-2018 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 641 6.6E-245 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Pfam PF00773 RNB domain 189 516 5.8E-85 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 SUPERFAMILY SSF50249 8 80 5.78E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 13-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Gene3D G3DSA:2.40.50.140 1 82 1.5E-31 T 13-10-2018 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 SMART SM00955 189 517 2.3E-127 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 Pfam PF00575 S1 RNA binding domain 559 636 2.4E-11 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 SUPERFAMILY SSF50249 83 171 8.57E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 SUPERFAMILY SSF50249 560 642 1.14E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 SUPERFAMILY SSF50249 178 556 2.66E-115 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_11385 00e1a67fe232c5a7c1bc5ec93ded9fed 644 SMART SM00357 23 79 1.1E-13 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 673 684 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 Pfam PF13183 4Fe-4S dicluster domain 576 687 1.9E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 SUPERFAMILY SSF46548 516 691 1.09E-8 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 SUPERFAMILY SSF56176 18 282 3.42E-55 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 1.1E-63 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 Gene3D G3DSA:3.30.465.40 20 210 8.9E-47 T 13-10-2018 CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 SUPERFAMILY SSF55103 257 542 4.91E-55 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CS348_13255 dc05ec2073e1b383ade463e0965d0b1a 1018 Pfam PF01565 FAD binding domain 52 192 1.2E-36 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CS348_05000 d05edf00e4d1cad51d27cab9847e4099 156 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 1.8E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_05000 d05edf00e4d1cad51d27cab9847e4099 156 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_05000 d05edf00e4d1cad51d27cab9847e4099 156 SUPERFAMILY SSF54523 8 145 2.28E-7 T 13-10-2018 CS348_04950 b6ba85c5f7161580ebf21f6eae1e30ff 400 Pfam PF07690 Major Facilitator Superfamily 20 354 1.5E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_04950 b6ba85c5f7161580ebf21f6eae1e30ff 400 SUPERFAMILY SSF103473 14 396 1.83E-21 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_04950 b6ba85c5f7161580ebf21f6eae1e30ff 400 Hamap MF_01585 Lysophospholipid transporter LplT [lplT]. 1 397 39.409 T 13-10-2018 IPR023727 Lysophospholipid transporter LplT GO:0005886|GO:0051977|GO:0051978 CS348_04950 b6ba85c5f7161580ebf21f6eae1e30ff 400 Gene3D G3DSA:1.20.1250.20 12 395 6.8E-20 T 13-10-2018 CS348_24535 ebe13c5230a44aabd1d538be5cd89031 346 SUPERFAMILY SSF53850 29 336 3.37E-97 T 13-10-2018 CS348_24535 ebe13c5230a44aabd1d538be5cd89031 346 Gene3D G3DSA:3.40.190.10 103 278 2.4E-128 T 13-10-2018 CS348_24535 ebe13c5230a44aabd1d538be5cd89031 346 Pfam PF12849 PBP superfamily domain 25 307 4.5E-62 T 13-10-2018 IPR024370 PBP domain CS348_24535 ebe13c5230a44aabd1d538be5cd89031 346 Gene3D G3DSA:3.40.190.10 29 326 2.4E-128 T 13-10-2018 CS348_24535 ebe13c5230a44aabd1d538be5cd89031 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 2.1E-129 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 CS348_24535 ebe13c5230a44aabd1d538be5cd89031 346 PIRSF PIRSF002756 1 338 9.9E-106 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 CS348_03680 626816ce9fd16f0d960028f72cd3bae7 124 SUPERFAMILY SSF51182 26 115 5.88E-17 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_03680 626816ce9fd16f0d960028f72cd3bae7 124 Gene3D G3DSA:2.60.120.10 9 115 1.8E-20 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_03680 626816ce9fd16f0d960028f72cd3bae7 124 Pfam PF05899 Protein of unknown function (DUF861) 41 114 9.8E-21 T 13-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 CS348_02790 be61712b94de050f955aad390b2ca76b 447 Gene3D G3DSA:3.40.50.620 14 191 1.9E-120 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_02790 be61712b94de050f955aad390b2ca76b 447 SUPERFAMILY SSF52402 3 186 1.68E-35 T 13-10-2018 CS348_02790 be61712b94de050f955aad390b2ca76b 447 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_02790 be61712b94de050f955aad390b2ca76b 447 SUPERFAMILY SSF69864 190 444 8.63E-80 T 13-10-2018 CS348_02790 be61712b94de050f955aad390b2ca76b 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 419 3.6E-168 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_02790 be61712b94de050f955aad390b2ca76b 447 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_02790 be61712b94de050f955aad390b2ca76b 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 443 76.339 T 13-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_02790 be61712b94de050f955aad390b2ca76b 447 Gene3D G3DSA:1.10.287.400 377 440 5.7E-33 T 13-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_02790 be61712b94de050f955aad390b2ca76b 447 Gene3D G3DSA:3.90.1260.10 74 367 1.9E-120 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_02790 be61712b94de050f955aad390b2ca76b 447 Pfam PF00764 Arginosuccinate synthase 16 410 4.0E-56 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 SMART SM00304 213 265 3.1E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 179 1.4E-16 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 441 470 3.1E-55 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 287 316 3.1E-55 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 364 391 3.1E-55 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 3.1E-55 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 393 422 3.1E-55 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 SUPERFAMILY SSF58104 233 516 1.31E-67 T 13-10-2018 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 Gene3D G3DSA:1.10.287.950 212 515 2.9E-83 T 13-10-2018 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 479 6.5E-43 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03150 98c7a977fd1f3d9d2810704e29a50ae4 522 SMART SM00283 266 513 1.8E-72 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_24960 72040518e637528cb48301ec4c88ecd3 187 Pfam PF11140 Protein of unknown function (DUF2913) 12 171 1.2E-21 T 13-10-2018 IPR021316 Protein of unknown function DUF2913 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 Gene3D G3DSA:3.40.228.10 1 273 2.8E-72 T 13-10-2018 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 Gene3D G3DSA:2.40.40.20 629 804 3.6E-73 T 13-10-2018 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 SUPERFAMILY SSF53706 1 639 7.07E-230 T 13-10-2018 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 Pfam PF00384 Molybdopterin oxidoreductase 2 377 1.0E-21 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 Gene3D G3DSA:3.40.50.740 317 472 1.3E-58 T 13-10-2018 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 Gene3D G3DSA:3.40.228.10 548 628 1.0E-27 T 13-10-2018 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 716 743 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 SUPERFAMILY SSF50692 618 804 4.14E-43 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 Pfam PF01568 Molydopterin dinucleotide binding domain 682 797 2.0E-17 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_23605 b06a236c8d6b66ffa9f077b8a7c06261 804 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 803 0.0 T 13-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 CS348_15645 fb8ac0817b71750d4b862b11889b539c 498 Pfam PF17482 Phage tail sheath C-terminal domain 377 489 1.2E-22 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CS348_15645 fb8ac0817b71750d4b862b11889b539c 498 PIRSF PIRSF007349 1 491 2.1E-200 T 13-10-2018 IPR007067 Tail sheath protein CS348_15645 fb8ac0817b71750d4b862b11889b539c 498 Pfam PF17481 Phage tail sheath protein beta-sandwich domain 97 180 4.3E-8 T 13-10-2018 IPR035326 Phage tail sheath protein, beta-sandwich domain CS348_15645 fb8ac0817b71750d4b862b11889b539c 498 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 206 368 1.3E-29 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain CS348_11935 af09f73d52ef2070386a569c7c76b2d7 198 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 1 196 3.2E-105 T 13-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 CS348_11935 af09f73d52ef2070386a569c7c76b2d7 198 Gene3D G3DSA:3.40.50.150 1 198 1.1E-59 T 13-10-2018 CS348_11935 af09f73d52ef2070386a569c7c76b2d7 198 Pfam PF03848 Tellurite resistance protein TehB 1 193 6.9E-102 T 13-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain CS348_11935 af09f73d52ef2070386a569c7c76b2d7 198 SUPERFAMILY SSF53335 5 197 1.57E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_20150 6b5b541165ecbaf14dd3f595c018d7ee 457 SUPERFAMILY SSF103473 39 442 1.27E-30 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_20150 6b5b541165ecbaf14dd3f595c018d7ee 457 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 21 453 1.4E-107 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_20150 6b5b541165ecbaf14dd3f595c018d7ee 457 Gene3D G3DSA:1.20.1250.20 29 443 2.7E-18 T 13-10-2018 CS348_20150 6b5b541165ecbaf14dd3f595c018d7ee 457 Pfam PF13347 MFS/sugar transport protein 23 439 1.9E-79 T 13-10-2018 CS348_00855 ba55b9f9f8a5a571c8d5f6e4cfbfab12 157 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 18 144 9.3E-31 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ CS348_12555 fd5ca2227fd4e17979149994c64c21ed 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 4.9E-80 T 13-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B CS348_12555 fd5ca2227fd4e17979149994c64c21ed 205 Gene3D G3DSA:3.30.70.20 1 203 8.4E-57 T 13-10-2018 CS348_12555 fd5ca2227fd4e17979149994c64c21ed 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_12555 fd5ca2227fd4e17979149994c64c21ed 205 SUPERFAMILY SSF54862 3 199 6.17E-70 T 13-10-2018 CS348_12555 fd5ca2227fd4e17979149994c64c21ed 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0027 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_12555 fd5ca2227fd4e17979149994c64c21ed 205 Pfam PF13247 4Fe-4S dicluster domain 59 153 1.0E-28 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 Pfam PF07690 Major Facilitator Superfamily 34 402 2.2E-47 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 PIRSF PIRSF002808 6 453 3.5E-106 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 ProSitePatterns PS00942 glpT family of transporters signature. 150 166 - T 13-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 Gene3D G3DSA:1.20.1250.20 18 225 1.1E-44 T 13-10-2018 CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 Gene3D G3DSA:1.20.1250.20 245 440 1.5E-42 T 13-10-2018 CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 419 2.2E-150 T 13-10-2018 CS348_07630 a8565cc29d50e8ec98a0f17c7582a524 463 SUPERFAMILY SSF103473 9 438 2.49E-75 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 SUPERFAMILY SSF160544 244 351 1.96E-41 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 1.9E-43 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 1.9E-43 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 1.9E-43 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 1.9E-43 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 1.9E-43 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 354 5.1E-140 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 9.4E-125 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 CS348_10165 d8ab6fd67ea4b483e23ada530ddf758f 383 Gene3D G3DSA:3.40.1690.10 217 356 2.8E-59 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal CS348_22140 4832f9a47453a41a36577ae6ab2c911e 208 Gene3D G3DSA:3.30.70.20 1 205 2.6E-52 T 13-10-2018 CS348_22140 4832f9a47453a41a36577ae6ab2c911e 208 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_22140 4832f9a47453a41a36577ae6ab2c911e 208 SUPERFAMILY SSF54862 1 192 7.74E-62 T 13-10-2018 CS348_22140 4832f9a47453a41a36577ae6ab2c911e 208 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 3 163 4.7E-84 T 13-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B CS348_22140 4832f9a47453a41a36577ae6ab2c911e 208 Pfam PF13247 4Fe-4S dicluster domain 59 153 5.8E-28 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_23180 a31aa4ee2faa5112436eab4d3a3c6b24 255 Gene3D G3DSA:3.20.20.70 1 255 2.0E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23180 a31aa4ee2faa5112436eab4d3a3c6b24 255 Pfam PF00121 Triosephosphate isomerase 5 246 1.1E-93 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_23180 a31aa4ee2faa5112436eab4d3a3c6b24 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 7.2E-107 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_23180 a31aa4ee2faa5112436eab4d3a3c6b24 255 SUPERFAMILY SSF51351 1 248 8.64E-92 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_23180 a31aa4ee2faa5112436eab4d3a3c6b24 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_23180 a31aa4ee2faa5112436eab4d3a3c6b24 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 62.929 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_15335 688f73cc1732d5ad860935513a83c631 427 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 423 5.2E-140 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CS348_15335 688f73cc1732d5ad860935513a83c631 427 SUPERFAMILY SSF55205 1 423 3.83E-143 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CS348_15335 688f73cc1732d5ad860935513a83c631 427 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CS348_15335 688f73cc1732d5ad860935513a83c631 427 ProSitePatterns PS00885 EPSP synthase signature 2. 338 356 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CS348_15335 688f73cc1732d5ad860935513a83c631 427 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 420 1.6E-153 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CS348_15335 688f73cc1732d5ad860935513a83c631 427 PIRSF PIRSF000505 1 427 9.1E-154 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CS348_15335 688f73cc1732d5ad860935513a83c631 427 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 35.143 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CS348_15335 688f73cc1732d5ad860935513a83c631 427 Gene3D G3DSA:3.65.10.10 241 420 5.3E-159 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CS348_15335 688f73cc1732d5ad860935513a83c631 427 Gene3D G3DSA:3.65.10.10 20 223 5.3E-159 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 Pfam PF01795 MraW methylase family 4 310 2.8E-122 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 PIRSF PIRSF004486 1 312 1.0E-103 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 1 310 4.3E-134 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 Gene3D G3DSA:1.10.150.170 112 214 1.7E-111 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 Gene3D G3DSA:3.40.50.150 10 310 1.7E-111 T 13-10-2018 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 SUPERFAMILY SSF81799 114 213 1.96E-35 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 311 39.216 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CS348_19735 c9e8547cabc925a11e5cac26116cb3ab 313 SUPERFAMILY SSF53335 7 310 6.14E-46 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 Gene3D G3DSA:1.20.120.910 20 150 5.0E-36 T 13-10-2018 CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 2.6E-51 T 13-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 SUPERFAMILY SSF109635 9 109 3.01E-37 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 SUPERFAMILY SSF57716 111 149 4.56E-10 T 13-10-2018 CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 29.987 T 13-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 110 143 2.4E-10 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CS348_19355 c6e2e7ea845c681a78816a934a3de084 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 13-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CS348_09910 3ee66204766ce5067aac3c93ef2e04c6 77 SUPERFAMILY SSF64307 2 77 2.75E-24 T 13-10-2018 IPR036868 TusA-like domain superfamily CS348_09910 3ee66204766ce5067aac3c93ef2e04c6 77 Pfam PF01206 Sulfurtransferase TusA 9 77 1.2E-19 T 13-10-2018 IPR001455 TusA-like domain CS348_09910 3ee66204766ce5067aac3c93ef2e04c6 77 Gene3D G3DSA:3.30.110.40 5 77 8.3E-32 T 13-10-2018 IPR036868 TusA-like domain superfamily CS348_09910 3ee66204766ce5067aac3c93ef2e04c6 77 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 10 34 - T 13-10-2018 IPR001455 TusA-like domain CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 Gene3D G3DSA:3.30.450.40 98 274 1.1E-67 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 SUPERFAMILY SSF46785 24 97 3.26E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 Pfam PF01614 Bacterial transcriptional regulator 144 267 1.2E-39 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 SUPERFAMILY SSF55781 95 271 1.83E-47 T 13-10-2018 CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 SMART SM00346 24 114 1.3E-38 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 Gene3D G3DSA:1.10.10.10 22 97 2.5E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_22670 358ef0d5f50db97014a552b37d2ae9b4 274 Pfam PF09339 IclR helix-turn-helix domain 26 76 1.1E-18 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_16470 4c516bd672136e75776a8765a69083ba 382 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 13-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00959 Mevalonate kinase family signature 25 49 5.8E-46 T 13-10-2018 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00959 Mevalonate kinase family signature 119 141 5.8E-46 T 13-10-2018 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00959 Mevalonate kinase family signature 328 345 5.8E-46 T 13-10-2018 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00959 Mevalonate kinase family signature 162 181 5.8E-46 T 13-10-2018 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PIRSF PIRSF000530 1 382 3.4E-124 T 13-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 SUPERFAMILY SSF54211 2 202 9.87E-65 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_16470 4c516bd672136e75776a8765a69083ba 382 SUPERFAMILY SSF55060 205 380 6.88E-52 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CS348_16470 4c516bd672136e75776a8765a69083ba 382 Pfam PF00288 GHMP kinases N terminal domain 114 181 8.0E-14 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CS348_16470 4c516bd672136e75776a8765a69083ba 382 TIGRFAM TIGR00131 gal_kin: galactokinase 5 382 6.7E-171 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 Gene3D G3DSA:3.30.230.10 2 205 9.6E-67 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_16470 4c516bd672136e75776a8765a69083ba 382 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 CS348_16470 4c516bd672136e75776a8765a69083ba 382 Pfam PF08544 GHMP kinases C terminal 279 361 5.7E-12 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain CS348_16470 4c516bd672136e75776a8765a69083ba 382 Gene3D G3DSA:3.30.70.890 206 381 6.3E-64 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00473 Galactokinase signature 92 103 3.6E-30 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00473 Galactokinase signature 27 45 3.6E-30 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00473 Galactokinase signature 263 277 3.6E-30 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 PRINTS PR00473 Galactokinase signature 112 130 3.6E-30 T 13-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 Pfam PF10509 Galactokinase galactose-binding signature 10 58 1.0E-21 T 13-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_16470 4c516bd672136e75776a8765a69083ba 382 Hamap MF_00246 Galactokinase [galK]. 25 381 45.59 T 13-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 224 315 2.5E-18 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 Gene3D G3DSA:3.30.1220.10 203 318 7.1E-44 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 SMART SM00833 224 317 4.2E-9 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 SUPERFAMILY SSF90002 224 315 4.84E-25 T 13-10-2018 CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 182 1.7E-50 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 SUPERFAMILY SSF52540 3 202 1.22E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_20985 1b0af947a02296c3a3ce6843603dd872 318 Gene3D G3DSA:3.40.50.300 1 202 1.4E-69 T 13-10-2018 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.968 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 3.5E-34 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 Gene3D G3DSA:4.10.910.10 72 118 3.8E-27 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 4.6E-53 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 Gene3D G3DSA:1.10.8.50 1 71 6.3E-27 T 13-10-2018 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 PIRSF PIRSF002134 1 118 1.3E-41 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02120 f761396ad9821a55bcd1b1e5aba2ed26 118 SUPERFAMILY SSF46946 2 114 1.65E-45 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 PRINTS PR00834 HtrA/DegQ protease family signature 184 208 2.2E-60 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 PRINTS PR00834 HtrA/DegQ protease family signature 219 236 2.2E-60 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 PRINTS PR00834 HtrA/DegQ protease family signature 122 134 2.2E-60 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 PRINTS PR00834 HtrA/DegQ protease family signature 143 163 2.2E-60 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 PRINTS PR00834 HtrA/DegQ protease family signature 241 258 2.2E-60 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 PRINTS PR00834 HtrA/DegQ protease family signature 327 339 2.2E-60 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 SMART SM00228 394 464 8.5E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 SMART SM00228 287 369 2.2E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 Gene3D G3DSA:2.40.10.120 39 281 4.9E-85 T 13-10-2018 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 Pfam PF13365 Trypsin-like peptidase domain 112 248 1.7E-32 T 13-10-2018 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 SUPERFAMILY SSF50494 8 296 7.78E-65 T 13-10-2018 IPR009003 Peptidase S1, PA clan CS348_19275 041878e50d31e57814723bb2cc9f614b 472 Gene3D G3DSA:2.30.42.10 285 385 1.2E-26 T 13-10-2018 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 470 5.5E-167 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 Gene3D G3DSA:2.30.42.10 386 472 3.7E-38 T 13-10-2018 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 285 365 2.3E-15 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 389 461 1.2E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 SUPERFAMILY SSF50156 269 378 4.26E-22 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_19275 041878e50d31e57814723bb2cc9f614b 472 SUPERFAMILY SSF50156 396 468 2.63E-17 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_08070 544e530471ea67b87ce54089d5466eee 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 1.1E-147 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CS348_08070 544e530471ea67b87ce54089d5466eee 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 4.0E-90 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08070 544e530471ea67b87ce54089d5466eee 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.836 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CS348_09500 1c6a328f073e1d2765f40d1d9a39e6e5 210 Pfam PF02570 Precorrin-8X methylmutase 10 205 4.0E-66 T 13-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 CS348_09500 1c6a328f073e1d2765f40d1d9a39e6e5 210 Gene3D G3DSA:3.40.50.10230 1 210 1.6E-72 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 CS348_09500 1c6a328f073e1d2765f40d1d9a39e6e5 210 SUPERFAMILY SSF63965 9 208 1.27E-63 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 CS348_13280 3f7b5dc096cf39c19159933e28b2459d 411 Pfam PF07690 Major Facilitator Superfamily 18 319 5.1E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_13280 3f7b5dc096cf39c19159933e28b2459d 411 Gene3D G3DSA:1.20.1250.20 207 394 2.3E-13 T 13-10-2018 CS348_13280 3f7b5dc096cf39c19159933e28b2459d 411 SUPERFAMILY SSF103473 8 392 6.8E-41 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_13280 3f7b5dc096cf39c19159933e28b2459d 411 Gene3D G3DSA:1.20.1250.20 10 195 3.9E-21 T 13-10-2018 CS348_21835 661ffd029b0198a28304e90c70a57310 153 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 1.6E-42 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CS348_21835 661ffd029b0198a28304e90c70a57310 153 SUPERFAMILY SSF52540 29 131 1.5E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_21835 661ffd029b0198a28304e90c70a57310 153 Gene3D G3DSA:3.40.50.300 2 153 8.0E-49 T 13-10-2018 CS348_21835 661ffd029b0198a28304e90c70a57310 153 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 5.0E-59 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 Pfam PF12833 Helix-turn-helix domain 205 279 3.7E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 SUPERFAMILY SSF46689 233 278 4.48E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 Gene3D G3DSA:1.10.10.60 176 285 9.0E-27 T 13-10-2018 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 5.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 5.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 SMART SM00342 197 279 1.6E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_22105 57b8343f015adca2a76d14fa8c3c8653 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 233 275 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 SUPERFAMILY SSF51735 91 238 5.51E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 Pfam PF02153 Prephenate dehydrogenase 138 344 1.1E-29 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 Gene3D G3DSA:1.20.59.10 1 80 1.4E-15 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 Pfam PF01817 Chorismate mutase type II 9 86 4.5E-19 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 SMART SM00830 9 89 1.9E-28 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 1.1E-45 T 13-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 Gene3D G3DSA:1.10.3660.10 248 373 4.2E-51 T 13-10-2018 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 SUPERFAMILY SSF48600 4 88 1.1E-22 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 Gene3D G3DSA:3.40.50.720 81 246 1.9E-45 T 13-10-2018 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 SUPERFAMILY SSF48179 241 366 7.14E-42 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_06460 838187e4d85c147f0b9abb5b051a6887 373 PIRSF PIRSF001499 1 373 4.6E-184 T 13-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 Gene3D G3DSA:3.40.47.10 6 275 4.5E-152 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 SUPERFAMILY SSF53901 271 391 9.41E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 PIRSF PIRSF000429 1 392 4.5E-130 T 13-10-2018 IPR002155 Thiolase GO:0016747 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 SUPERFAMILY SSF53901 3 268 1.22E-80 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 ProSitePatterns PS00737 Thiolases signature 2. 338 354 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 Pfam PF00108 Thiolase, N-terminal domain 4 261 4.0E-101 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 Pfam PF02803 Thiolase, C-terminal domain 270 391 2.3E-52 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 Gene3D G3DSA:3.40.47.10 126 388 4.5E-152 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 390 5.2E-142 T 13-10-2018 IPR002155 Thiolase GO:0016747 CS348_04890 ac70d8a465a69386db5bb3c3de358aad 392 ProSitePatterns PS00099 Thiolases active site. 373 386 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 CS348_11860 8e543664464fb2dc474add59ce48b43a 502 SUPERFAMILY SSF53474 7 497 2.03E-114 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_11860 8e543664464fb2dc474add59ce48b43a 502 Pfam PF00135 Carboxylesterase family 7 329 6.1E-88 T 13-10-2018 IPR002018 Carboxylesterase, type B CS348_11860 8e543664464fb2dc474add59ce48b43a 502 Pfam PF00135 Carboxylesterase family 353 474 1.6E-12 T 13-10-2018 IPR002018 Carboxylesterase, type B CS348_11860 8e543664464fb2dc474add59ce48b43a 502 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 84 94 - T 13-10-2018 IPR019819 Carboxylesterase type B, conserved site CS348_11860 8e543664464fb2dc474add59ce48b43a 502 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 182 197 - T 13-10-2018 IPR019826 Carboxylesterase type B, active site CS348_11860 8e543664464fb2dc474add59ce48b43a 502 Gene3D G3DSA:3.40.50.1820 3 501 1.9E-127 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_11860 8e543664464fb2dc474add59ce48b43a 502 PRINTS PR00878 Cholinesterase signature 108 137 2.9E-6 T 13-10-2018 IPR000997 Cholinesterase GO:0004104 Reactome: R-HSA-112311|Reactome: R-HSA-1483191|Reactome: R-HSA-422085 CS348_11860 8e543664464fb2dc474add59ce48b43a 502 PRINTS PR00878 Cholinesterase signature 400 412 2.9E-6 T 13-10-2018 IPR000997 Cholinesterase GO:0004104 Reactome: R-HSA-112311|Reactome: R-HSA-1483191|Reactome: R-HSA-422085 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 Gene3D G3DSA:1.10.150.80 195 293 4.0E-24 T 13-10-2018 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 SUPERFAMILY SSF53098 2 210 7.21E-67 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_10735 737709b0db074e3565fb8c785822a1c0 375 Gene3D G3DSA:1.10.150.80 294 375 3.1E-32 T 13-10-2018 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 SMART SM00341 210 289 2.6E-20 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.043 T 13-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 SUPERFAMILY SSF47819 295 372 4.97E-23 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 Pfam PF01612 3'-5' exonuclease 3 167 2.9E-45 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 SMART SM00474 3 171 2.2E-52 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 TIGRFAM TIGR01388 rnd: ribonuclease D 5 371 3.5E-155 T 13-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 Pfam PF00570 HRDC domain 213 278 4.8E-14 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 SUPERFAMILY SSF47819 195 301 2.99E-29 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 CS348_10735 737709b0db074e3565fb8c785822a1c0 375 Gene3D G3DSA:3.30.420.10 1 194 3.3E-73 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 243 7.1E-60 T 13-10-2018 CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 SUPERFAMILY SSF51735 3 245 1.12E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 2.8E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.8E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.8E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.8E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.8E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 Gene3D G3DSA:3.40.50.720 1 245 4.6E-76 T 13-10-2018 CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 6.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 6.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 6.6E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_08785 c59b08c6eaec85d47b22f20a9176c1fd 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_11025 d61b2f1d998fe99d95de75acbf66f9c1 225 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 1 225 8.6E-125 T 13-10-2018 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 CS348_11025 d61b2f1d998fe99d95de75acbf66f9c1 225 Pfam PF02665 Nitrate reductase gamma subunit 5 224 1.0E-79 T 13-10-2018 IPR023234 NarG-like domain CS348_11025 d61b2f1d998fe99d95de75acbf66f9c1 225 Gene3D G3DSA:1.20.950.20 1 216 5.3E-84 T 13-10-2018 CS348_11025 d61b2f1d998fe99d95de75acbf66f9c1 225 SUPERFAMILY SSF103501 1 224 3.79E-70 T 13-10-2018 IPR036197 NarG-like superfamily CS348_08815 92b711b252dee49129dcba612542d588 765 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 273 290 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 SUPERFAMILY SSF51445 34 394 1.05E-100 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_08815 92b711b252dee49129dcba612542d588 765 Gene3D G3DSA:3.20.20.300 29 371 3.5E-117 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 Pfam PF14310 Fibronectin type III-like domain 686 753 7.6E-21 T 13-10-2018 IPR026891 Fibronectin type III-like domain CS348_08815 92b711b252dee49129dcba612542d588 765 SMART SM01217 685 754 2.5E-29 T 13-10-2018 IPR026891 Fibronectin type III-like domain CS348_08815 92b711b252dee49129dcba612542d588 765 SUPERFAMILY SSF52279 395 651 5.89E-59 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 120 139 1.7E-22 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 166 182 1.7E-22 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 273 291 1.7E-22 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 203 219 1.7E-22 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 PRINTS PR00133 Glycosyl hydrolase family 3 signature 101 117 1.7E-22 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 395 648 5.3E-62 T 13-10-2018 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 46 352 6.6E-101 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_08815 92b711b252dee49129dcba612542d588 765 Gene3D G3DSA:2.60.40.10 651 763 1.9E-36 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_08815 92b711b252dee49129dcba612542d588 765 Gene3D G3DSA:3.40.50.1700 381 650 8.9E-98 T 13-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 CS348_22365 90558cf5d20ba4445732080f851651b3 107 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_22365 90558cf5d20ba4445732080f851651b3 107 Gene3D G3DSA:1.10.10.60 3 55 3.9E-26 T 13-10-2018 CS348_22365 90558cf5d20ba4445732080f851651b3 107 Pfam PF12833 Helix-turn-helix domain 27 106 6.8E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_22365 90558cf5d20ba4445732080f851651b3 107 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 2.4E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22365 90558cf5d20ba4445732080f851651b3 107 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 2.4E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22365 90558cf5d20ba4445732080f851651b3 107 SUPERFAMILY SSF46689 4 56 3.42E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22365 90558cf5d20ba4445732080f851651b3 107 Gene3D G3DSA:1.10.10.60 56 107 1.1E-16 T 13-10-2018 CS348_22365 90558cf5d20ba4445732080f851651b3 107 SUPERFAMILY SSF46689 57 106 2.15E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22365 90558cf5d20ba4445732080f851651b3 107 SMART SM00342 21 104 4.4E-34 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_15260 29a1cbe1309f64f8200f32fc1fda02b1 234 Pfam PF04288 MukE-like family 10 230 3.4E-126 T 13-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 CS348_15260 29a1cbe1309f64f8200f32fc1fda02b1 234 Gene3D G3DSA:1.10.10.2250 1 78 8.2E-40 T 13-10-2018 CS348_15260 29a1cbe1309f64f8200f32fc1fda02b1 234 Gene3D G3DSA:1.10.10.2260 88 195 4.1E-56 T 13-10-2018 CS348_15260 29a1cbe1309f64f8200f32fc1fda02b1 234 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 234 48.74 T 13-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 CS348_20215 be88ad84c53a899598ca9e0ed6410db6 149 SUPERFAMILY SSF46894 10 101 6.52E-8 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_20215 be88ad84c53a899598ca9e0ed6410db6 149 SMART SM00862 25 102 1.6E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_20215 be88ad84c53a899598ca9e0ed6410db6 149 Gene3D G3DSA:1.10.10.10 6 107 4.8E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20215 be88ad84c53a899598ca9e0ed6410db6 149 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 99 5.0E-7 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_07325 0fbded7859f143971a7e236721dac508 178 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 38 178 47.079 T 13-10-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 CS348_07325 0fbded7859f143971a7e236721dac508 178 Gene3D G3DSA:3.40.630.30 38 178 6.9E-45 T 13-10-2018 CS348_07325 0fbded7859f143971a7e236721dac508 178 SUPERFAMILY SSF55729 29 163 2.95E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_07325 0fbded7859f143971a7e236721dac508 178 PIRSF PIRSF037663 38 170 6.6E-11 T 13-10-2018 IPR017255 Acetyltransferase, GNAT, predicted CS348_07325 0fbded7859f143971a7e236721dac508 178 Pfam PF00583 Acetyltransferase (GNAT) family 55 160 2.3E-18 T 13-10-2018 IPR000182 GNAT domain CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 118 131 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 SUPERFAMILY SSF88659 225 323 1.46E-23 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Gene3D G3DSA:1.10.10.10 244 320 1.0E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Gene3D G3DSA:1.10.10.10 167 242 4.0E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 SUPERFAMILY SSF88659 167 241 8.72E-15 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Gene3D G3DSA:1.10.601.10 83 166 1.1E-45 T 13-10-2018 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 SUPERFAMILY SSF88946 56 164 2.75E-45 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF00140 Sigma-70 factor, region 1.2 56 88 2.9E-11 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF04542 Sigma-70 region 2 94 163 3.6E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF04545 Sigma-70, region 4 262 315 2.7E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 48 328 4.4E-145 T 13-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 3 328 40.01 T 13-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 266 278 2.5E-27 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 287 302 2.5E-27 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 118 131 2.5E-27 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 302 313 2.5E-27 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 PRINTS PR00046 Major sigma-70 factor signature 142 150 2.5E-27 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 Pfam PF04539 Sigma-70 region 3 174 248 1.2E-20 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 90 317 5.5E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CS348_05410 7c19736d8895724e9657e5cf36aa484c 330 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 287 313 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.841 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 SUPERFAMILY SSF143034 2 64 3.01E-22 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 1.1E-22 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 1.1E-22 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 1.1E-22 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.2E-26 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 Gene3D G3DSA:2.40.50.530 1 65 4.8E-19 T 13-10-2018 CS348_13645 fe1a8a3a51c56dbf0860aac70e1d7bd7 65 Pfam PF01632 Ribosomal protein L35 2 60 2.6E-22 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Gene3D G3DSA:3.30.450.20 86 199 9.8E-8 T 13-10-2018 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 6.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 6.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 6.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 6.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 SUPERFAMILY SSF47384 190 268 1.28E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 95 420 6.1E-137 T 13-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Pfam PF00989 PAS fold 99 194 5.4E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 SUPERFAMILY SSF55874 259 423 3.01E-42 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 SUPERFAMILY SSF55785 87 195 3.49E-11 T 13-10-2018 IPR035965 PAS domain superfamily CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 5.0E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Gene3D G3DSA:3.30.565.10 277 428 2.0E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 1.4E-26 T 13-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 SMART SM00387 313 425 1.4E-37 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Gene3D G3DSA:1.10.287.130 200 269 2.2E-23 T 13-10-2018 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 424 1.4E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 SMART SM00388 203 269 1.0E-22 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_18375 9794f3e03d5dedebcc78e42269c1b960 431 SMART SM00091 98 164 1.8E-5 T 13-10-2018 IPR000014 PAS domain CS348_12590 057540439e2c4dd5671f64363a1c624d 429 PRINTS PR00762 Chloride channel signature 364 380 1.5E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 PRINTS PR00762 Chloride channel signature 329 349 1.5E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 PRINTS PR00762 Chloride channel signature 165 184 1.5E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 PRINTS PR00762 Chloride channel signature 382 401 1.5E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 PRINTS PR00762 Chloride channel signature 115 134 1.5E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 Gene3D G3DSA:1.10.3080.10 13 429 3.0E-77 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 Pfam PF00654 Voltage gated chloride channel 77 414 6.1E-72 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 Hamap MF_01203 Voltage-gated ClC-type chloride channel ClcB [clcB]. 16 425 37.893 T 13-10-2018 IPR023790 Chloride channel, voltage-gated, ClcB GO:0006821|GO:0010447 CS348_12590 057540439e2c4dd5671f64363a1c624d 429 SUPERFAMILY SSF81340 5 425 3.53E-87 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Gene3D G3DSA:3.30.420.110 132 267 9.9E-38 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Pfam PF00488 MutS domain V 612 799 1.9E-88 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 SUPERFAMILY SSF52540 569 800 3.71E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Pfam PF05190 MutS family domain IV 430 519 2.2E-28 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 12 852 0.0 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Pfam PF01624 MutS domain I 13 124 8.1E-43 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Pfam PF05188 MutS domain II 133 258 1.4E-33 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 SMART SM00533 288 593 6.9E-107 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Gene3D G3DSA:1.10.1420.10 389 505 1.3E-110 T 13-10-2018 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 12 847 25.372 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 690 706 - T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Gene3D G3DSA:3.40.50.300 572 848 1.7E-100 T 13-10-2018 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Pfam PF05192 MutS domain III 274 560 1.1E-38 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 SUPERFAMILY SSF48334 272 568 2.49E-89 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 SMART SM00534 609 796 1.6E-123 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Gene3D G3DSA:3.40.1170.10 4 126 4.1E-53 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 PIRSF PIRSF037677 213 835 4.4E-126 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 PIRSF PIRSF037677 5 192 5.1E-28 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 Gene3D G3DSA:1.10.1420.10 271 560 1.3E-110 T 13-10-2018 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 SUPERFAMILY SSF55271 7 118 1.83E-43 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CS348_05485 8a6bdd9dac0c82c34c788e4b728a8556 855 SUPERFAMILY SSF53150 119 271 2.62E-43 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 435 540 1.7E-10 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 Gene3D G3DSA:3.30.230.10 326 568 2.9E-92 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 Gene3D G3DSA:3.40.50.300 33 236 1.0E-15 T 13-10-2018 CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 SUPERFAMILY SSF54211 347 542 2.16E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 462 481 1.3E-9 T 13-10-2018 CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 432 451 1.3E-9 T 13-10-2018 CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 492 510 1.3E-9 T 13-10-2018 CS348_15155 7c84d05527d92f2caa8f84d60ee2357b 586 Pfam PF13654 AAA domain 140 302 5.2E-20 T 13-10-2018 CS348_23655 dfcf217333193a9daefa67d511e91c61 145 Gene3D G3DSA:3.50.80.10 1 145 7.0E-59 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CS348_23655 dfcf217333193a9daefa67d511e91c61 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 35.09 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CS348_23655 dfcf217333193a9daefa67d511e91c61 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 2.3E-73 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CS348_23655 dfcf217333193a9daefa67d511e91c61 145 SUPERFAMILY SSF69500 1 144 6.02E-57 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CS348_23655 dfcf217333193a9daefa67d511e91c61 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 3.8E-54 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CS348_09350 bce2b099c9625839348a7749072c6dae 254 Pfam PF01292 Prokaryotic cytochrome b561 59 239 6.3E-21 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_09350 bce2b099c9625839348a7749072c6dae 254 Gene3D G3DSA:1.20.950.20 57 248 1.5E-15 T 13-10-2018 CS348_09350 bce2b099c9625839348a7749072c6dae 254 SUPERFAMILY SSF81342 56 247 3.69E-23 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Gene3D G3DSA:1.10.287.130 187 302 9.5E-21 T 13-10-2018 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Gene3D G3DSA:3.30.565.10 303 449 7.3E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 SUPERFAMILY SSF47384 219 301 6.87E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 238 301 5.4E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 SMART SM00387 348 449 9.2E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 SMART SM00388 236 302 3.7E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 442 6.1E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 431 4.9E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 395 4.9E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Pfam PF08521 Two-component sensor kinase N-terminal 23 158 9.6E-5 T 13-10-2018 IPR013727 Two-component sensor kinase, N-terminal CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Gene3D G3DSA:1.20.5.1040 1 59 3.4E-21 T 13-10-2018 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 Gene3D G3DSA:1.20.5.1040 128 185 1.2E-17 T 13-10-2018 CS348_03355 dd3602b6c5685bb404c5061e2ecbaebd 449 SUPERFAMILY SSF55874 291 448 2.36E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00190 37033f6c9d673d97cb0ad85817f794cf 394 SUPERFAMILY SSF103473 5 387 7.72E-55 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00190 37033f6c9d673d97cb0ad85817f794cf 394 Gene3D G3DSA:1.20.1720.10 9 383 3.0E-135 T 13-10-2018 CS348_00190 37033f6c9d673d97cb0ad85817f794cf 394 Pfam PF07690 Major Facilitator Superfamily 14 349 1.4E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_00190 37033f6c9d673d97cb0ad85817f794cf 394 TIGRFAM TIGR00880 2_A_01_02: multidrug resistance protein 51 186 7.4E-39 T 13-10-2018 IPR004734 Multidrug resistance protein GO:0015238|GO:0015893|GO:0016021 Reactome: R-HSA-442660 CS348_14290 ff1dc632117d068259c2738ad820be55 336 Gene3D G3DSA:3.30.2440.10 21 135 3.1E-52 T 13-10-2018 CS348_14290 ff1dc632117d068259c2738ad820be55 336 Gene3D G3DSA:1.10.1740.30 193 327 1.6E-130 T 13-10-2018 CS348_14290 ff1dc632117d068259c2738ad820be55 336 Gene3D G3DSA:3.30.390.70 136 304 1.6E-130 T 13-10-2018 CS348_14290 ff1dc632117d068259c2738ad820be55 336 Pfam PF06767 Sif protein 1 336 2.0E-200 T 13-10-2018 IPR010637 Sif CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 Gene3D G3DSA:1.10.10.10 1 83 4.9E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 ProDom PD055259 TRANSCRIPTION TRANSCRIPTIONAL REGULATOR DNA-BINDING ACTIVATOR REGULATION YFAH FAMILY LYSR REGULATOR 225 290 5.0E-31 T 13-10-2018 IPR020093 Uncharacterised domain YfaH, C-terminal CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 Gene3D G3DSA:3.40.190.10 163 261 4.4E-40 T 13-10-2018 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 Gene3D G3DSA:3.40.190.10 93 266 4.4E-40 T 13-10-2018 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.9E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.9E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.9E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 SUPERFAMILY SSF53850 89 266 2.66E-35 T 13-10-2018 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.8E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 SUPERFAMILY SSF46785 1 111 7.61E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08250 0f1c09f9f90201158882bd0ecf37d6e2 292 Pfam PF03466 LysR substrate binding domain 89 266 1.8E-35 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 SMART SM00922 149 269 3.9E-18 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 SUPERFAMILY SSF51604 109 395 6.26E-81 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 Pfam PF13378 Enolase C-terminal domain-like 152 389 7.4E-52 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 Gene3D G3DSA:3.30.390.10 23 393 1.0E-162 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 SUPERFAMILY SSF54826 1 126 4.82E-32 T 13-10-2018 CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 18 121 7.6E-22 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CS348_08290 a9c9ce63bf6ce3ebed81fb41f1805283 400 Gene3D G3DSA:3.20.20.120 114 381 1.0E-162 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_23380 8f4cd35897ae137d6f3ee9ded7dfb8af 165 Gene3D G3DSA:1.10.530.10 3 165 5.6E-54 T 13-10-2018 CS348_23380 8f4cd35897ae137d6f3ee9ded7dfb8af 165 SUPERFAMILY SSF53955 7 163 7.87E-46 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_23380 8f4cd35897ae137d6f3ee9ded7dfb8af 165 Pfam PF00959 Phage lysozyme 34 152 1.2E-18 T 13-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 CS348_23380 8f4cd35897ae137d6f3ee9ded7dfb8af 165 Hamap MF_04109 Endolysin. 1 165 38.883 T 13-10-2018 IPR034691 Endolysin lambda type GO:0003796|GO:0009253|GO:0019076|GO:0044659 CS348_15580 03efaa4797aba51f803ba46533bd4e08 298 PIRSF PIRSF029703 1 296 6.2E-130 T 13-10-2018 IPR009977 Mig-14 CS348_15580 03efaa4797aba51f803ba46533bd4e08 298 SUPERFAMILY SSF55729 133 287 3.39E-10 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_15580 03efaa4797aba51f803ba46533bd4e08 298 Pfam PF07395 Mig-14 35 295 4.3E-99 T 13-10-2018 IPR009977 Mig-14 CS348_04795 e94950edbc74e58158fe5ac0708f9ccf 252 Gene3D G3DSA:2.70.70.10 83 245 3.2E-38 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_04795 e94950edbc74e58158fe5ac0708f9ccf 252 Pfam PF01551 Peptidase family M23 146 239 7.8E-31 T 13-10-2018 IPR016047 Peptidase M23 CS348_04795 e94950edbc74e58158fe5ac0708f9ccf 252 SUPERFAMILY SSF51261 41 243 1.2E-47 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_04795 e94950edbc74e58158fe5ac0708f9ccf 252 Gene3D G3DSA:3.10.350.10 39 82 2.5E-16 T 13-10-2018 IPR036779 LysM domain superfamily CS348_04795 e94950edbc74e58158fe5ac0708f9ccf 252 SMART SM00257 41 85 1.5E-16 T 13-10-2018 IPR018392 LysM domain CS348_04795 e94950edbc74e58158fe5ac0708f9ccf 252 Pfam PF01476 LysM domain 42 84 2.1E-15 T 13-10-2018 IPR018392 LysM domain CS348_01255 da06c2f016de9d87b1224f2f899fe2a2 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 42.297 T 13-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 CS348_01255 da06c2f016de9d87b1224f2f899fe2a2 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_01255 da06c2f016de9d87b1224f2f899fe2a2 280 SUPERFAMILY SSF53335 9 279 3.47E-101 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_01255 da06c2f016de9d87b1224f2f899fe2a2 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 7.4E-118 T 13-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 CS348_01255 da06c2f016de9d87b1224f2f899fe2a2 280 Gene3D G3DSA:3.40.50.150 1 280 7.7E-124 T 13-10-2018 CS348_17440 9c7ed4b48aafb1261778348be340de4d 298 PIRSF PIRSF029703 1 296 3.9E-130 T 13-10-2018 IPR009977 Mig-14 CS348_17440 9c7ed4b48aafb1261778348be340de4d 298 SUPERFAMILY SSF55729 133 287 8.48E-10 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_17440 9c7ed4b48aafb1261778348be340de4d 298 Pfam PF07395 Mig-14 35 295 4.5E-99 T 13-10-2018 IPR009977 Mig-14 CS348_01460 45c6b0bc4728de9367c40cd901668a00 281 Gene3D G3DSA:1.10.3720.10 2 274 6.0E-50 T 13-10-2018 IPR035906 MetI-like superfamily CS348_01460 45c6b0bc4728de9367c40cd901668a00 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 276 4.3E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_01460 45c6b0bc4728de9367c40cd901668a00 281 SUPERFAMILY SSF161098 4 277 4.02E-57 T 13-10-2018 IPR035906 MetI-like superfamily CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 Gene3D G3DSA:3.40.50.720 109 297 1.8E-113 T 13-10-2018 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 4.7E-38 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 SUPERFAMILY SSF52283 7 138 4.89E-50 T 13-10-2018 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 SUPERFAMILY SSF55021 328 409 2.33E-19 T 13-10-2018 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 Gene3D G3DSA:3.30.70.260 328 409 5.1E-31 T 13-10-2018 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 SUPERFAMILY SSF51735 108 295 3.41E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 Gene3D G3DSA:3.40.50.720 14 312 1.8E-113 T 13-10-2018 CS348_04645 9d5a3fb7090a98b69ae0146d35b5e1ee 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 2.9E-51 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CS348_00810 0ed9bd1a64c4aac71d4d2cc61a6a2104 512 Gene3D G3DSA:3.40.309.10 272 470 1.1E-164 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_00810 0ed9bd1a64c4aac71d4d2cc61a6a2104 512 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_00810 0ed9bd1a64c4aac71d4d2cc61a6a2104 512 Pfam PF00171 Aldehyde dehydrogenase family 33 498 2.1E-166 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_00810 0ed9bd1a64c4aac71d4d2cc61a6a2104 512 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 300 311 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_00810 0ed9bd1a64c4aac71d4d2cc61a6a2104 512 Gene3D G3DSA:3.40.605.10 29 498 1.1E-164 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_00810 0ed9bd1a64c4aac71d4d2cc61a6a2104 512 SUPERFAMILY SSF53720 21 505 3.93E-163 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_20180 81a6867300663ab403ad00492395f8c3 396 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 47 396 2.0E-24 T 13-10-2018 CS348_20180 81a6867300663ab403ad00492395f8c3 396 Pfam PF04055 Radical SAM superfamily 15 184 8.0E-10 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_20180 81a6867300663ab403ad00492395f8c3 396 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 8 380 2.8E-162 T 13-10-2018 CS348_20180 81a6867300663ab403ad00492395f8c3 396 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 272 361 2.3E-19 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_20180 81a6867300663ab403ad00492395f8c3 396 Gene3D G3DSA:3.20.20.70 5 382 2.1E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_20180 81a6867300663ab403ad00492395f8c3 396 Pfam PF13186 Iron-sulfur cluster-binding domain 273 333 1.6E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_20180 81a6867300663ab403ad00492395f8c3 396 SUPERFAMILY SSF102114 16 342 7.98E-38 T 13-10-2018 CS348_20180 81a6867300663ab403ad00492395f8c3 396 Pfam PF13353 4Fe-4S single cluster domain 16 130 2.7E-5 T 13-10-2018 CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 SUPERFAMILY SSF54826 1 96 2.63E-27 T 13-10-2018 CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 SMART SM00922 114 209 3.8E-13 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 Pfam PF13378 Enolase C-terminal domain-like 122 279 1.7E-17 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 Gene3D G3DSA:3.20.20.120 97 294 1.3E-132 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 SUPERFAMILY SSF51604 106 305 1.31E-51 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 320 21.426 T 13-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 306 3.2E-126 T 13-10-2018 CS348_08115 857c5c6cfd17f838b185976aebd910ab 320 Gene3D G3DSA:3.30.390.10 3 301 1.3E-132 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 Gene3D G3DSA:3.30.420.40 3 315 9.4E-136 T 13-10-2018 CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.842 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 7.7E-130 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 SUPERFAMILY SSF53067 1 309 7.77E-45 T 13-10-2018 CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 6.6E-53 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 6.6E-53 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 6.6E-53 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 6.6E-53 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 6.6E-53 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 6.6E-53 T 13-10-2018 IPR017861 Kae1/TsaD family CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 Gene3D G3DSA:3.30.420.40 129 293 9.4E-136 T 13-10-2018 CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 Pfam PF00814 Glycoprotease family 24 307 1.4E-103 T 13-10-2018 IPR000905 Gcp-like domain CS348_03190 208c375f29bf80cc509b303b7bea8c90 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 1.3E-136 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 CS348_12120 10d26236949a336105f40332ac73ce5d 495 Gene3D G3DSA:1.20.1250.20 255 494 7.4E-13 T 13-10-2018 CS348_12120 10d26236949a336105f40332ac73ce5d 495 Pfam PF07690 Major Facilitator Superfamily 12 403 8.7E-40 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12120 10d26236949a336105f40332ac73ce5d 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 394 413 7.4E-9 T 13-10-2018 CS348_12120 10d26236949a336105f40332ac73ce5d 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 132 156 7.4E-9 T 13-10-2018 CS348_12120 10d26236949a336105f40332ac73ce5d 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 70 92 7.4E-9 T 13-10-2018 CS348_12120 10d26236949a336105f40332ac73ce5d 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 157 181 7.4E-9 T 13-10-2018 CS348_12120 10d26236949a336105f40332ac73ce5d 495 SUPERFAMILY SSF103473 3 489 5.62E-54 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12120 10d26236949a336105f40332ac73ce5d 495 Gene3D G3DSA:1.20.1720.10 6 247 1.9E-33 T 13-10-2018 CS348_04810 2a40c4eb0656f5812bcc847be22f6b98 88 Gene3D G3DSA:3.40.50.1010 7 88 1.3E-16 T 13-10-2018 CS348_04810 2a40c4eb0656f5812bcc847be22f6b98 88 SUPERFAMILY SSF88723 27 87 1.82E-17 T 13-10-2018 IPR029060 PIN-like domain superfamily CS348_00495 d8804501d17ded6ec29552a3dec509ba 229 Pfam PF00588 SpoU rRNA Methylase family 20 159 1.5E-36 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CS348_00495 d8804501d17ded6ec29552a3dec509ba 229 Gene3D G3DSA:3.40.1280.10 1 190 7.7E-62 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_00495 d8804501d17ded6ec29552a3dec509ba 229 SUPERFAMILY SSF75217 4 184 2.16E-49 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_00495 d8804501d17ded6ec29552a3dec509ba 229 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 36.999 T 13-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 CS348_00495 d8804501d17ded6ec29552a3dec509ba 229 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 1.4E-24 T 13-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 CS348_03205 f8bbb92a0585993e6541c3dea12b1410 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 3.7E-27 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CS348_03205 f8bbb92a0585993e6541c3dea12b1410 119 SMART SM00905 4 114 1.3E-46 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CS348_03205 f8bbb92a0585993e6541c3dea12b1410 119 Gene3D G3DSA:3.30.1130.10 1 119 2.0E-44 T 13-10-2018 CS348_03205 f8bbb92a0585993e6541c3dea12b1410 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 2.0E-31 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CS348_03205 f8bbb92a0585993e6541c3dea12b1410 119 SUPERFAMILY SSF55620 1 115 4.06E-36 T 13-10-2018 CS348_03205 f8bbb92a0585993e6541c3dea12b1410 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 118 4.9E-41 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CS348_23645 4dcaf075edccd53164b3ae5d9d50aef4 148 Gene3D G3DSA:1.10.260.40 75 148 9.2E-8 T 13-10-2018 CS348_23645 4dcaf075edccd53164b3ae5d9d50aef4 148 Pfam PF01381 Helix-turn-helix 93 144 2.4E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_23645 4dcaf075edccd53164b3ae5d9d50aef4 148 SUPERFAMILY SSF47413 88 147 2.59E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_23645 4dcaf075edccd53164b3ae5d9d50aef4 148 SMART SM00530 92 146 2.0E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_12205 7e9722ca0473a07c1d43cd0845f2a521 109 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 1 104 28.931 T 13-10-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 CS348_12205 7e9722ca0473a07c1d43cd0845f2a521 109 Pfam PF06411 HdeA/HdeB family 11 97 1.0E-21 T 13-10-2018 IPR010486 HNS-dependent expression A/B CS348_12205 7e9722ca0473a07c1d43cd0845f2a521 109 Gene3D G3DSA:1.10.890.10 31 109 1.7E-35 T 13-10-2018 IPR038303 HNS-dependent expression A/B superfamily CS348_12205 7e9722ca0473a07c1d43cd0845f2a521 109 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 1 107 3.0E-57 T 13-10-2018 CS348_13690 26ebf66083ddc006cf715c19a5eeaa3a 96 Gene3D G3DSA:3.30.70.2360 8 95 5.5E-11 T 13-10-2018 IPR038241 Endoribonuclease antitoxin GhoS superfamily GO:0004521 CS348_13690 26ebf66083ddc006cf715c19a5eeaa3a 96 Pfam PF11080 Endoribonuclease GhoS 1 94 1.9E-43 T 13-10-2018 IPR022597 Endoribonuclease antitoxin GhoS GO:0004521 CS348_13690 26ebf66083ddc006cf715c19a5eeaa3a 96 ProDom PD066031 YDIZ CYTOPLASMIC STY1786 1 94 5.0E-48 T 13-10-2018 IPR020499 Uncharacterised protein family YdiZ CS348_24205 335e974929ad7dae97fe81e2ff073f7e 367 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 9 353 28.617 T 13-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 CS348_24205 335e974929ad7dae97fe81e2ff073f7e 367 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 8 351 7.3E-171 T 13-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 CS348_24205 335e974929ad7dae97fe81e2ff073f7e 367 Pfam PF00953 Glycosyl transferase family 4 76 232 1.1E-27 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 Gene3D G3DSA:2.60.300.12 2 107 1.2E-37 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 45.393 T 13-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 4.0E-26 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 8.0E-38 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 1.6E-61 T 13-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 CS348_06845 0ae6559f0aae2b94182902ae7e17b79a 107 SUPERFAMILY SSF89360 1 96 3.14E-32 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 SUPERFAMILY SSF52540 18 257 3.69E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 Pfam PF08402 TOBE domain 292 372 3.2E-8 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 Gene3D G3DSA:2.40.50.940 236 298 2.0E-10 T 13-10-2018 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 Gene3D G3DSA:3.40.50.300 18 235 1.1E-68 T 13-10-2018 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 48 372 1.4E-165 T 13-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 SUPERFAMILY SSF50331 250 367 1.7E-7 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 Pfam PF00005 ABC transporter 34 174 7.4E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 SMART SM00382 42 225 7.2E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_14280 ea12afe0fa2ae7e564bd3a7dfe3e5b2b 378 Gene3D G3DSA:2.40.50.140 299 316 2.0E-10 T 13-10-2018 CS348_07895 e75e1eeef177243e2c9875ef0a6a55b7 215 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 197 1.7E-13 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CS348_07895 e75e1eeef177243e2c9875ef0a6a55b7 215 SUPERFAMILY SSF47616 78 203 5.59E-35 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_07895 e75e1eeef177243e2c9875ef0a6a55b7 215 Gene3D G3DSA:3.40.30.10 4 88 1.1E-82 T 13-10-2018 CS348_07895 e75e1eeef177243e2c9875ef0a6a55b7 215 SUPERFAMILY SSF52833 1 84 1.17E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_07895 e75e1eeef177243e2c9875ef0a6a55b7 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 83 9.3E-11 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_07895 e75e1eeef177243e2c9875ef0a6a55b7 215 Gene3D G3DSA:1.20.1050.10 89 198 1.1E-82 T 13-10-2018 CS348_23635 83675f84ef67c4faa2632791e739a213 309 Pfam PF07859 alpha/beta hydrolase fold 75 280 2.5E-66 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 CS348_23635 83675f84ef67c4faa2632791e739a213 309 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 147 159 - T 13-10-2018 IPR033140 Lipase, GDXG, putative serine active site CS348_23635 83675f84ef67c4faa2632791e739a213 309 SUPERFAMILY SSF53474 25 297 2.79E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_23635 83675f84ef67c4faa2632791e739a213 309 Gene3D G3DSA:3.40.50.1820 2 302 1.7E-79 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_18370 59098b9c03d484f16408c0ad9f5ed1f0 439 Pfam PF05525 Branched-chain amino acid transport protein 7 429 1.6E-160 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CS348_18370 59098b9c03d484f16408c0ad9f5ed1f0 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 4.9E-163 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CS348_07360 5a2fdd5a012e49eef7b1df29d412d2b1 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 275 3.2E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_07360 5a2fdd5a012e49eef7b1df29d412d2b1 291 SUPERFAMILY SSF161098 16 268 3.53E-52 T 13-10-2018 IPR035906 MetI-like superfamily CS348_07360 5a2fdd5a012e49eef7b1df29d412d2b1 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 276 7.0E-112 T 13-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 CS348_07360 5a2fdd5a012e49eef7b1df29d412d2b1 291 Gene3D G3DSA:1.10.3720.10 20 280 8.8E-61 T 13-10-2018 IPR035906 MetI-like superfamily CS348_07360 5a2fdd5a012e49eef7b1df29d412d2b1 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 2 275 2.0E-114 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 SMART SM00866 97 236 7.2E-25 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 SUPERFAMILY SSF64288 65 239 4.87E-39 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 SUPERFAMILY SSF46785 7 85 3.09E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 Gene3D G3DSA:3.40.1410.10 78 239 4.1E-35 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 Pfam PF07702 UTRA domain 97 235 4.7E-31 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.5E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 SMART SM00345 17 76 1.0E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 2.3E-22 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_01225 285fbbf9bcaeced761902b23f47a4ac1 239 Gene3D G3DSA:1.10.10.10 3 77 2.5E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00295 47a68deb9c476b1c81524d998a40ed99 286 SUPERFAMILY SSF51569 1 277 2.64E-76 T 13-10-2018 CS348_00295 47a68deb9c476b1c81524d998a40ed99 286 Pfam PF01116 Fructose-bisphosphate aldolase class-II 8 278 9.0E-79 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_00295 47a68deb9c476b1c81524d998a40ed99 286 Gene3D G3DSA:3.20.20.70 1 284 2.0E-84 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00295 47a68deb9c476b1c81524d998a40ed99 286 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 84 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_00295 47a68deb9c476b1c81524d998a40ed99 286 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 278 3.8E-66 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_00295 47a68deb9c476b1c81524d998a40ed99 286 PIRSF PIRSF001359 1 281 4.7E-74 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CS348_25820 a9eb5b24ee74688cacceb76bcebca28a 103 SUPERFAMILY SSF50118 5 102 1.57E-15 T 13-10-2018 CS348_25820 a9eb5b24ee74688cacceb76bcebca28a 103 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 15 102 2.0E-7 T 13-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 CS348_25820 a9eb5b24ee74688cacceb76bcebca28a 103 Gene3D G3DSA:2.30.30.110 1 102 1.3E-21 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CS348_25820 a9eb5b24ee74688cacceb76bcebca28a 103 Pfam PF01845 CcdB protein 6 102 1.1E-18 T 13-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 SUPERFAMILY SSF90123 8 327 2.62E-42 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 SUPERFAMILY SSF52540 332 570 7.5E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 Gene3D G3DSA:1.20.1560.10 3 321 2.0E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 SMART SM00382 365 549 2.7E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 Gene3D G3DSA:3.40.50.300 327 572 6.8E-80 T 13-10-2018 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 6 533 3.3E-191 T 13-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 Pfam PF00664 ABC transporter transmembrane region 82 287 6.8E-9 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_15440 b05209f871729b369ff7caaef77cb9d0 573 Pfam PF00005 ABC transporter 356 502 2.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_11085 bacb40ed308da9bb40013598b820ee25 302 Gene3D G3DSA:3.90.550.10 1 302 4.7E-96 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_11085 bacb40ed308da9bb40013598b820ee25 302 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 275 2.0E-116 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 CS348_11085 bacb40ed308da9bb40013598b820ee25 302 Pfam PF00483 Nucleotidyl transferase 10 276 7.5E-26 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CS348_11085 bacb40ed308da9bb40013598b820ee25 302 SUPERFAMILY SSF53448 9 291 6.08E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_00405 3255355c041145a0486473cfd4fdfe0c 226 Gene3D G3DSA:3.40.50.850 10 215 1.8E-49 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_00405 3255355c041145a0486473cfd4fdfe0c 226 SUPERFAMILY SSF52499 13 209 3.92E-47 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_00405 3255355c041145a0486473cfd4fdfe0c 226 Pfam PF00857 Isochorismatase family 20 172 1.1E-20 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CS348_21870 96da6ab52bb9131d5c729af63f5fbd67 181 Gene3D G3DSA:3.30.420.10 1 181 9.4E-71 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_21870 96da6ab52bb9131d5c729af63f5fbd67 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 44.792 T 13-10-2018 IPR022894 Oligoribonuclease GO:0000175 CS348_21870 96da6ab52bb9131d5c729af63f5fbd67 181 SUPERFAMILY SSF53098 3 180 2.47E-48 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_21870 96da6ab52bb9131d5c729af63f5fbd67 181 SMART SM00479 7 180 7.5E-22 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_21870 96da6ab52bb9131d5c729af63f5fbd67 181 Pfam PF00929 Exonuclease 9 170 6.0E-36 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_12700 8475591cb839f55ad24f159ab95b7357 433 SMART SM00304 158 210 4.8E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 Gene3D G3DSA:1.10.287.130 164 272 5.6E-22 T 13-10-2018 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.5E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 Gene3D G3DSA:3.30.565.10 281 424 1.4E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_12700 8475591cb839f55ad24f159ab95b7357 433 SMART SM00387 315 425 2.4E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_12700 8475591cb839f55ad24f159ab95b7357 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 211 270 2.0E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 321 422 5.1E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_12700 8475591cb839f55ad24f159ab95b7357 433 SUPERFAMILY SSF55874 261 424 3.8E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_12700 8475591cb839f55ad24f159ab95b7357 433 SMART SM00388 211 271 1.1E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_12700 8475591cb839f55ad24f159ab95b7357 433 SUPERFAMILY SSF47384 194 271 1.65E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_21170 8d53d514aa24050113d5b0135f3b3752 176 SUPERFAMILY SSF52540 3 163 1.18E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_21170 8d53d514aa24050113d5b0135f3b3752 176 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 166 4.2E-70 T 13-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 CS348_21170 8d53d514aa24050113d5b0135f3b3752 176 Pfam PF01202 Shikimate kinase 12 162 1.4E-9 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_21170 8d53d514aa24050113d5b0135f3b3752 176 Gene3D G3DSA:3.40.50.300 2 168 1.1E-60 T 13-10-2018 CS348_15330 a6fe500be8f715dc990438b2d6e9288f 253 Pfam PF01435 Peptidase family M48 74 247 6.9E-27 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CS348_15330 a6fe500be8f715dc990438b2d6e9288f 253 Gene3D G3DSA:3.30.2010.10 62 148 8.2E-9 T 13-10-2018 CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.0E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.0E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 2.0E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 2.0E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 2.0E-18 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.005 T 13-10-2018 CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 Gene3D G3DSA:3.40.50.720 2 244 2.4E-60 T 13-10-2018 CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 SUPERFAMILY SSF51735 3 253 8.5E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_17830 7ea2f6846dd3cb195696cc2d30282d2c 256 Pfam PF00106 short chain dehydrogenase 3 191 2.7E-39 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_22235 8817e0e8b18466c75346a25a8b4b4bb6 147 SUPERFAMILY SSF54593 2 139 3.32E-29 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_22235 8817e0e8b18466c75346a25a8b4b4bb6 147 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 138 2.3E-6 T 13-10-2018 IPR028973 PhnB-like CS348_22235 8817e0e8b18466c75346a25a8b4b4bb6 147 Gene3D G3DSA:3.10.180.10 1 145 2.8E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_01870 1a4914f14441eae96ddfd62e8660cc16 355 PIRSF PIRSF005211 23 355 1.6E-109 T 13-10-2018 IPR012020 AB hydrolase 4 family CS348_01870 1a4914f14441eae96ddfd62e8660cc16 355 Pfam PF00561 alpha/beta hydrolase fold 89 328 1.5E-30 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CS348_01870 1a4914f14441eae96ddfd62e8660cc16 355 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 255 296 - T 13-10-2018 IPR000952 AB hydrolase 4, conserved site CS348_01870 1a4914f14441eae96ddfd62e8660cc16 355 SUPERFAMILY SSF53474 52 338 2.66E-38 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_01870 1a4914f14441eae96ddfd62e8660cc16 355 Gene3D G3DSA:3.40.50.1820 69 340 4.6E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_10610 ea1ee3f2b9a05648ac4eae83ae58cce0 47 Hamap MF_01596 PhoP/PhoQ regulator MgrB [mgrB]. 1 47 20.037 T 13-10-2018 IPR020907 PhoP/PhoQ regulator MgrB CS348_10610 ea1ee3f2b9a05648ac4eae83ae58cce0 47 Pfam PF13998 MgrB protein 19 47 8.2E-18 T 13-10-2018 IPR020907 PhoP/PhoQ regulator MgrB CS348_24800 301a127fa85d9b3e26f016db164fbf8d 168 Pfam PF00436 Single-strand binding protein family 6 110 3.3E-42 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CS348_24800 301a127fa85d9b3e26f016db164fbf8d 168 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.198 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_24800 301a127fa85d9b3e26f016db164fbf8d 168 SUPERFAMILY SSF50249 4 161 2.06E-54 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_24800 301a127fa85d9b3e26f016db164fbf8d 168 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 146 2.0E-55 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_24800 301a127fa85d9b3e26f016db164fbf8d 168 PIRSF PIRSF002070 2 163 2.6E-40 T 13-10-2018 CS348_24800 301a127fa85d9b3e26f016db164fbf8d 168 Gene3D G3DSA:2.40.50.140 2 144 2.1E-50 T 13-10-2018 CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 SMART SM00382 28 213 8.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 2.0E-7 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 Pfam PF00005 ABC transporter 20 166 1.4E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 Gene3D G3DSA:3.40.50.300 2 241 2.4E-72 T 13-10-2018 CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 4.1E-120 T 13-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_02640 e8dc1a2224045a6297299b276c22cefd 241 SUPERFAMILY SSF52540 4 236 1.59E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24185 44ba1c8bf03e935e7d81e5324fbd3fed 355 Gene3D G3DSA:3.90.25.10 202 335 2.0E-141 T 13-10-2018 CS348_24185 44ba1c8bf03e935e7d81e5324fbd3fed 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 8.8E-101 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_24185 44ba1c8bf03e935e7d81e5324fbd3fed 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 341 4.6E-162 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CS348_24185 44ba1c8bf03e935e7d81e5324fbd3fed 355 SUPERFAMILY SSF51735 1 346 3.71E-97 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_24185 44ba1c8bf03e935e7d81e5324fbd3fed 355 Gene3D G3DSA:3.40.50.720 3 326 2.0E-141 T 13-10-2018 CS348_11530 8aa639aa619a516b70c5046a42d91d29 168 Hamap MF_00269 Thiol peroxidase [tpx]. 4 167 38.832 T 13-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 CS348_11530 8aa639aa619a516b70c5046a42d91d29 168 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 CS348_11530 8aa639aa619a516b70c5046a42d91d29 168 SUPERFAMILY SSF52833 4 164 3.78E-44 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_11530 8aa639aa619a516b70c5046a42d91d29 168 Gene3D G3DSA:3.40.30.10 1 168 1.8E-48 T 13-10-2018 CS348_11530 8aa639aa619a516b70c5046a42d91d29 168 Pfam PF08534 Redoxin 20 163 2.7E-29 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CS348_08230 f7f1a3ef45e85d6c73ed517a3c71da8c 419 Gene3D G3DSA:3.50.50.60 1 124 7.1E-6 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08230 f7f1a3ef45e85d6c73ed517a3c71da8c 419 Pfam PF00890 FAD binding domain 4 399 1.1E-60 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_08230 f7f1a3ef45e85d6c73ed517a3c71da8c 419 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 411 5.2E-175 T 13-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 CS348_08230 f7f1a3ef45e85d6c73ed517a3c71da8c 419 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 415 48.003 T 13-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 CS348_08230 f7f1a3ef45e85d6c73ed517a3c71da8c 419 PIRSF PIRSF000141 1 418 1.0E-168 T 13-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 CS348_08230 f7f1a3ef45e85d6c73ed517a3c71da8c 419 SUPERFAMILY SSF51905 1 416 3.11E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Gene3D G3DSA:3.40.50.10660 84 175 9.0E-32 T 13-10-2018 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 SUPERFAMILY SSF52540 334 565 4.62E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16965 3183ea7928289e5ad837f11caacd4398 642 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 355 368 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 SUPERFAMILY SSF159800 11 192 4.05E-40 T 13-10-2018 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Gene3D G3DSA:3.30.450.20 197 302 2.2E-6 T 13-10-2018 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Gene3D G3DSA:1.10.8.60 503 567 1.6E-15 T 13-10-2018 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Gene3D G3DSA:3.40.50.2300 13 190 9.0E-32 T 13-10-2018 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 SMART SM00382 351 496 8.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16965 3183ea7928289e5ad837f11caacd4398 642 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 545 554 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Gene3D G3DSA:3.40.50.300 319 502 3.2E-59 T 13-10-2018 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Pfam PF00158 Sigma-54 interaction domain 332 498 1.2E-64 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_16965 3183ea7928289e5ad837f11caacd4398 642 Pfam PF06506 Propionate catabolism activator 32 196 3.3E-39 T 13-10-2018 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 CS348_19505 88bb15a604c855ca545b2023d0a799ce 327 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 39 323 2.9E-102 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CS348_19505 88bb15a604c855ca545b2023d0a799ce 327 SUPERFAMILY SSF53659 4 327 4.96E-106 T 13-10-2018 CS348_19505 88bb15a604c855ca545b2023d0a799ce 327 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 327 9.7E-112 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CS348_19505 88bb15a604c855ca545b2023d0a799ce 327 Gene3D G3DSA:3.40.718.10 1 327 2.7E-143 T 13-10-2018 CS348_18355 69808cf378ecb6fd55068e001273b3da 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 193 2.9E-11 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_18355 69808cf378ecb6fd55068e001273b3da 200 Pfam PF00578 AhpC/TSA family 5 139 2.1E-34 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_18355 69808cf378ecb6fd55068e001273b3da 200 PIRSF PIRSF000239 1 198 1.1E-58 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CS348_18355 69808cf378ecb6fd55068e001273b3da 200 Gene3D G3DSA:3.40.30.10 1 197 3.0E-71 T 13-10-2018 CS348_18355 69808cf378ecb6fd55068e001273b3da 200 SUPERFAMILY SSF52833 1 193 3.16E-65 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_11080 1be00989a6043b8de97e83fa8ee482e4 337 SMART SM00448 8 120 1.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_11080 1be00989a6043b8de97e83fa8ee482e4 337 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 54.674 T 13-10-2018 IPR028616 Regulator of RpoS CS348_11080 1be00989a6043b8de97e83fa8ee482e4 337 Pfam PF00072 Response regulator receiver domain 10 119 2.0E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_11080 1be00989a6043b8de97e83fa8ee482e4 337 Gene3D G3DSA:3.60.40.10 144 318 3.9E-10 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CS348_11080 1be00989a6043b8de97e83fa8ee482e4 337 SUPERFAMILY SSF52172 8 157 3.98E-31 T 13-10-2018 IPR011006 CheY-like superfamily CS348_11080 1be00989a6043b8de97e83fa8ee482e4 337 Gene3D G3DSA:3.40.50.2300 1 130 2.0E-33 T 13-10-2018 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Gene3D G3DSA:3.50.50.60 295 458 1.5E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Gene3D G3DSA:3.50.50.60 1 235 1.0E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Pfam PF01134 Glucose inhibited division protein A 8 398 1.5E-170 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 0.0 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 43.007 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 SUPERFAMILY SSF51905 7 261 5.61E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 SMART SM01228 546 617 9.2E-45 T 13-10-2018 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Gene3D G3DSA:1.10.10.1800 459 550 2.6E-36 T 13-10-2018 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Pfam PF13932 GidA associated domain 403 616 6.1E-79 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 CS348_24430 4e9ff01531b9f4adeed8834991e189eb 629 Gene3D G3DSA:1.10.150.570 570 622 8.3E-23 T 13-10-2018 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 36.934 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 Gene3D G3DSA:3.40.50.620 1 159 8.1E-60 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 SUPERFAMILY SSF52374 3 156 1.42E-46 T 13-10-2018 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 62 1.8E-17 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 Pfam PF01467 Cytidylyltransferase-like 6 134 6.3E-22 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 78 8.0E-4 T 13-10-2018 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.4E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.4E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.4E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.4E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.4E-52 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_00590 ea9e43d80977cd333aa962878ff05aed 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 157 4.6E-61 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 SUPERFAMILY SSF53633 4 292 2.49E-76 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 Pfam PF00696 Amino acid kinase family 4 277 2.1E-48 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 Gene3D G3DSA:3.30.70.260 309 383 1.1E-51 T 13-10-2018 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 PIRSF PIRSF000726 2 449 1.9E-163 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 Gene3D G3DSA:3.30.70.260 303 447 1.1E-51 T 13-10-2018 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 Pfam PF01842 ACT domain 323 378 2.2E-6 T 13-10-2018 IPR002912 ACT domain CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 3 449 3.0E-149 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 SUPERFAMILY SSF55021 297 393 5.19E-17 T 13-10-2018 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 Gene3D G3DSA:1.20.120.1320 42 134 4.6E-107 T 13-10-2018 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 449 4.0E-139 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 Gene3D G3DSA:3.40.1160.10 6 289 4.6E-107 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CS348_22600 8884ccefd3bc298176e72f5077e5354e 449 SUPERFAMILY SSF55021 372 448 9.62E-15 T 13-10-2018 CS348_18090 c09347acdaa22c6a52dd7bf02d8808a9 231 Pfam PF06508 Queuosine biosynthesis protein QueC 3 213 4.7E-85 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CS348_18090 c09347acdaa22c6a52dd7bf02d8808a9 231 SUPERFAMILY SSF52402 1 213 1.65E-70 T 13-10-2018 CS348_18090 c09347acdaa22c6a52dd7bf02d8808a9 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 219 53.123 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CS348_18090 c09347acdaa22c6a52dd7bf02d8808a9 231 PIRSF PIRSF006293 1 226 1.1E-86 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CS348_18090 c09347acdaa22c6a52dd7bf02d8808a9 231 Gene3D G3DSA:3.40.50.620 1 231 6.3E-86 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_18090 c09347acdaa22c6a52dd7bf02d8808a9 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 206 2.1E-87 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CS348_01110 51e9edf1d5c676d6254a4735155bb11e 559 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 23 557 1.5E-246 T 13-10-2018 IPR017744 Cellulose biosynthesis protein BcsG CS348_01110 51e9edf1d5c676d6254a4735155bb11e 559 Pfam PF11658 Cellulose biosynthesis protein BcsG 24 554 8.5E-237 T 13-10-2018 IPR017744 Cellulose biosynthesis protein BcsG CS348_17900 e07ffc71904f1213294b7138fb1e8d16 434 Pfam PF00294 pfkB family carbohydrate kinase 87 294 6.6E-10 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_17900 e07ffc71904f1213294b7138fb1e8d16 434 SUPERFAMILY SSF53613 36 416 6.39E-46 T 13-10-2018 IPR029056 Ribokinase-like CS348_17900 e07ffc71904f1213294b7138fb1e8d16 434 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 352 365 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_05125 00fbe9246969612027cb6c634e0d2800 438 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 24 432 2.8E-198 T 13-10-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 CS348_05125 00fbe9246969612027cb6c634e0d2800 438 Gene3D G3DSA:1.20.1250.20 22 243 5.6E-70 T 13-10-2018 CS348_05125 00fbe9246969612027cb6c634e0d2800 438 SUPERFAMILY SSF103473 18 431 6.15E-44 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_05125 00fbe9246969612027cb6c634e0d2800 438 Pfam PF07690 Major Facilitator Superfamily 33 387 1.1E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_05125 00fbe9246969612027cb6c634e0d2800 438 Gene3D G3DSA:1.20.1250.20 244 438 1.7E-58 T 13-10-2018 CS348_18380 b9866a346be486dd564732a665d98a1d 229 SUPERFAMILY SSF52172 3 184 3.02E-43 T 13-10-2018 IPR011006 CheY-like superfamily CS348_18380 b9866a346be486dd564732a665d98a1d 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.6E-28 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_18380 b9866a346be486dd564732a665d98a1d 229 SMART SM00448 3 116 1.0E-45 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_18380 b9866a346be486dd564732a665d98a1d 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 7.5E-116 T 13-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 CS348_18380 b9866a346be486dd564732a665d98a1d 229 Gene3D G3DSA:1.10.10.10 128 229 8.9E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18380 b9866a346be486dd564732a665d98a1d 229 SMART SM00862 150 225 2.0E-27 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_18380 b9866a346be486dd564732a665d98a1d 229 Pfam PF00072 Response regulator receiver domain 5 117 8.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_18380 b9866a346be486dd564732a665d98a1d 229 Gene3D G3DSA:3.40.50.2300 1 127 6.4E-39 T 13-10-2018 CS348_10730 225fc65e5d3e15acaf120a701c0bb689 561 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 9.9E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_10730 225fc65e5d3e15acaf120a701c0bb689 561 Gene3D G3DSA:3.40.50.12780 12 451 5.5E-120 T 13-10-2018 CS348_10730 225fc65e5d3e15acaf120a701c0bb689 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_10730 225fc65e5d3e15acaf120a701c0bb689 561 SUPERFAMILY SSF56801 15 555 9.81E-155 T 13-10-2018 CS348_10730 225fc65e5d3e15acaf120a701c0bb689 561 Pfam PF00501 AMP-binding enzyme 29 460 6.4E-114 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_10730 225fc65e5d3e15acaf120a701c0bb689 561 Gene3D G3DSA:3.30.300.310 456 558 2.0E-31 T 13-10-2018 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 Gene3D G3DSA:3.40.50.1000 6 254 7.7E-55 T 13-10-2018 IPR023214 HAD superfamily CS348_18080 42f62661da056f6947b2832c44fda6a5 272 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 272 66.389 T 13-10-2018 IPR023938 HMP-PP phosphatase GO:0016818 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 SUPERFAMILY SSF56784 1 262 8.83E-63 T 13-10-2018 IPR036412 HAD-like superfamily CS348_18080 42f62661da056f6947b2832c44fda6a5 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 1.9E-53 T 13-10-2018 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 1.0E-58 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 1.3E-53 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 Gene3D G3DSA:3.30.1240.10 82 184 7.7E-55 T 13-10-2018 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 13-10-2018 CS348_18080 42f62661da056f6947b2832c44fda6a5 272 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 SUPERFAMILY SSF52016 419 600 1.73E-57 T 13-10-2018 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 Pfam PF00920 Dehydratase family 66 598 1.5E-157 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 602 58.238 T 13-10-2018 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 Gene3D G3DSA:3.50.30.80 419 568 7.5E-50 T 13-10-2018 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 505 516 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 602 0.0 T 13-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 CS348_10325 a4a3db743e58bee5081665c2edeaa8f7 603 SUPERFAMILY SSF143975 1 418 1.12E-145 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Gene3D G3DSA:2.60.40.2610 678 768 7.7E-29 T 13-10-2018 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Gene3D G3DSA:3.10.20.410 28 147 6.1E-19 T 13-10-2018 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Pfam PF13954 PapC N-terminal domain 30 169 2.2E-32 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Gene3D G3DSA:2.60.40.3110 260 349 1.2E-32 T 13-10-2018 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Gene3D G3DSA:2.60.40.2070 770 853 3.3E-15 T 13-10-2018 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Pfam PF00577 Outer membrane usher protein 189 763 5.1E-146 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 SUPERFAMILY SSF141729 53 159 3.4E-22 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 302 312 - T 13-10-2018 IPR018030 Fimbrial membrane usher, conserved site CS348_18700 fca8c88fa4a7fde4e5467209e1d1662f 853 Pfam PF13953 PapC C-terminal domain 772 835 7.9E-20 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_01365 900d646c4b7a6223dd3fbd4f773d5c4c 123 Pfam PF10694 Protein of unknown function (DUF2500) 5 115 2.5E-31 T 13-10-2018 IPR019635 Protein of unknown function DUF2500 CS348_01365 900d646c4b7a6223dd3fbd4f773d5c4c 123 Gene3D G3DSA:2.40.50.660 35 123 3.8E-38 T 13-10-2018 CS348_22375 bf5c82b0b9af9548a1b75689c77bff6f 93 PIRSF PIRSF030798 1 93 3.2E-56 T 13-10-2018 IPR016958 Uncharacterised conserved protein UCP030798 CS348_22375 bf5c82b0b9af9548a1b75689c77bff6f 93 Pfam PF15940 Family of unknown function 1 90 6.1E-43 T 13-10-2018 IPR016958 Uncharacterised conserved protein UCP030798 CS348_22375 bf5c82b0b9af9548a1b75689c77bff6f 93 ProDom PD064934 YJCB MEMBRANE INNER ECS5042 21 93 5.0E-37 T 13-10-2018 IPR016958 Uncharacterised conserved protein UCP030798 CS348_04415 beb2b0bd41167f81dc59c28f37c264f3 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 4.3E-43 T 13-10-2018 IPR007416 Protein of unknown function DUF469 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 463 5.6E-212 T 13-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 SUPERFAMILY SSF51261 499 646 1.92E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 502 622 1.2E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 Gene3D G3DSA:2.70.70.10 494 649 2.2E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 Gene3D G3DSA:3.30.1360.60 388 468 4.9E-25 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 360 452 3.9E-27 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 Pfam PF02378 Phosphotransferase system, EIIC 12 300 4.4E-75 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 501 625 3.8E-47 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 Pfam PF00367 phosphotransferase system, EIIB 396 427 3.7E-12 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 SUPERFAMILY SSF55604 392 465 1.31E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 564 576 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CS348_16835 b8b407ce475fd90ff7de4554d91e1d03 650 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 405 422 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_11355 4299822f6761eb33d0cf4474b09228a8 108 Gene3D G3DSA:3.30.780.10 28 108 4.1E-34 T 13-10-2018 CS348_11355 4299822f6761eb33d0cf4474b09228a8 108 SUPERFAMILY SSF55159 6 104 1.31E-25 T 13-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 CS348_11355 4299822f6761eb33d0cf4474b09228a8 108 Pfam PF01253 Translation initiation factor SUI1 32 101 2.6E-18 T 13-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 CS348_11355 4299822f6761eb33d0cf4474b09228a8 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 2.1E-38 T 13-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 CS348_11355 4299822f6761eb33d0cf4474b09228a8 108 PIRSF PIRSF037511 1 108 2.8E-36 T 13-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 CS348_03335 76d26b0c842f2c983d53a44d722197a7 193 Gene3D G3DSA:3.40.50.1820 1 192 3.2E-63 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_03335 76d26b0c842f2c983d53a44d722197a7 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 188 1.7E-72 T 13-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA CS348_03335 76d26b0c842f2c983d53a44d722197a7 193 SUPERFAMILY SSF53474 3 188 1.52E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 Gene3D G3DSA:3.30.1370.120 104 178 4.8E-34 T 13-10-2018 IPR038591 NolW-like superfamily CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 Pfam PF03958 Bacterial type II/III secretion system short domain 182 302 3.6E-14 T 13-10-2018 IPR005644 NolW-like CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 371 390 1.6E-40 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 192 209 1.6E-40 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 305 325 1.6E-40 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 405 420 1.6E-40 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 497 516 1.6E-40 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 Gene3D G3DSA:3.30.1370.120 239 305 8.3E-8 T 13-10-2018 IPR038591 NolW-like superfamily CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 256 519 2.2E-104 T 13-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 Pfam PF00263 Bacterial type II and III secretion system protein 358 516 6.1E-34 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 464 497 - T 13-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 CS348_05530 c4fb9815cd38681b61306cbffda32fd9 562 Gene3D G3DSA:3.55.50.30 20 103 5.3E-38 T 13-10-2018 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 13-10-2018 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 1.1E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 Gene3D G3DSA:3.40.50.2300 163 292 1.1E-60 T 13-10-2018 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 Gene3D G3DSA:1.10.260.40 1 62 1.1E-15 T 13-10-2018 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 Pfam PF13377 Periplasmic binding protein-like domain 178 330 4.2E-25 T 13-10-2018 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 SUPERFAMILY SSF47413 4 63 1.0E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 SMART SM00354 5 75 7.9E-29 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 SUPERFAMILY SSF53822 63 326 3.73E-55 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_21190 2aa1ba3a2566f106117a88d0361c2641 332 Gene3D G3DSA:3.40.50.2300 67 308 1.1E-60 T 13-10-2018 CS348_18180 ff0ba5e222050d179f44a0d054468600 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 282 2.3E-92 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CS348_18180 ff0ba5e222050d179f44a0d054468600 296 Gene3D G3DSA:1.10.357.140 14 181 1.4E-21 T 13-10-2018 CS348_18180 ff0ba5e222050d179f44a0d054468600 296 SUPERFAMILY SSF82866 15 125 8.76E-5 T 13-10-2018 CS348_18180 ff0ba5e222050d179f44a0d054468600 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 284 18.091 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CS348_18180 ff0ba5e222050d179f44a0d054468600 296 Pfam PF01040 UbiA prenyltransferase family 19 265 1.3E-60 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CS348_18180 ff0ba5e222050d179f44a0d054468600 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site CS348_07380 837bce8e2a964b9c8c6b795e90dc686e 239 Gene3D G3DSA:3.40.50.880 1 236 1.9E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_07380 837bce8e2a964b9c8c6b795e90dc686e 239 SUPERFAMILY SSF52317 11 216 6.81E-34 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_07380 837bce8e2a964b9c8c6b795e90dc686e 239 Pfam PF00117 Glutamine amidotransferase class-I 42 184 1.1E-12 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_05680 261f61b21ca08686fea7aea1e34bd8a3 223 ProDom PD038222 INVASION PLASMID OXYGEN-REGULATED III SECRETION MXIN TYPE SYSTEM PATHWAY ORGB 18 213 5.0E-114 T 13-10-2018 CS348_12040 8040518ef34806e517ebf858b9ce3997 221 Gene3D G3DSA:1.20.120.530 78 221 4.2E-23 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_12040 8040518ef34806e517ebf858b9ce3997 221 SUPERFAMILY SSF48008 80 215 1.7E-17 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_12040 8040518ef34806e517ebf858b9ce3997 221 SUPERFAMILY SSF46785 6 83 9.98E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12040 8040518ef34806e517ebf858b9ce3997 221 SMART SM00895 84 210 7.2E-7 T 13-10-2018 IPR011711 GntR, C-terminal CS348_12040 8040518ef34806e517ebf858b9ce3997 221 SMART SM00345 16 74 1.0E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_12040 8040518ef34806e517ebf858b9ce3997 221 Gene3D G3DSA:1.10.10.10 7 76 1.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12040 8040518ef34806e517ebf858b9ce3997 221 Pfam PF07729 FCD domain 85 208 1.9E-16 T 13-10-2018 IPR011711 GntR, C-terminal CS348_12040 8040518ef34806e517ebf858b9ce3997 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 74 4.3E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Gene3D G3DSA:2.30.220.10 191 290 5.2E-155 T 13-10-2018 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Gene3D G3DSA:2.170.280.10 177 413 5.2E-155 T 13-10-2018 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Gene3D G3DSA:1.20.1330.10 45 465 5.2E-155 T 13-10-2018 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 PRINTS PR00207 Flagellin signature 76 95 5.4E-32 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 PRINTS PR00207 Flagellin signature 111 134 5.4E-32 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 PRINTS PR00207 Flagellin signature 37 54 5.4E-32 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 3.3E-44 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 SUPERFAMILY SSF64518 1 506 5.75E-123 T 13-10-2018 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Gene3D G3DSA:1.20.58.1830 5 505 5.2E-155 T 13-10-2018 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Pfam PF08884 Flagellin D3 domain 197 285 1.7E-21 T 13-10-2018 IPR014981 Flagellin D3 CS348_06230 6af11535c46d28c5fa32eaedda27a20a 506 Pfam PF00700 Bacterial flagellin C-terminal helical region 420 505 2.2E-31 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 CS348_24300 3dc350edb4121c759eb859f07ae77c52 87 Gene3D G3DSA:3.30.70.260 1 86 3.5E-8 T 13-10-2018 CS348_24300 3dc350edb4121c759eb859f07ae77c52 87 Pfam PF13710 ACT domain 13 73 3.6E-27 T 13-10-2018 CS348_24300 3dc350edb4121c759eb859f07ae77c52 87 SUPERFAMILY SSF55021 3 75 3.01E-11 T 13-10-2018 CS348_12950 f0c4cc0dcc85f3b139183781d9206dbf 457 PIRSF PIRSF006603 4 456 1.8E-60 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_12950 f0c4cc0dcc85f3b139183781d9206dbf 457 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 457 52.78 T 13-10-2018 IPR022913 Multidrug resistance protein MdtK CS348_12950 f0c4cc0dcc85f3b139183781d9206dbf 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 5.2E-123 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_12950 f0c4cc0dcc85f3b139183781d9206dbf 457 Pfam PF01554 MatE 17 177 1.4E-40 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_12950 f0c4cc0dcc85f3b139183781d9206dbf 457 Pfam PF01554 MatE 244 405 3.9E-37 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_25135 097e27924029357bfc26361f7383eec6 178 TIGRFAM TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP 49 164 1.6E-25 T 13-10-2018 IPR022753 Type IV pilus biogenesis PilP CS348_11325 1e59d5bfc7e0d7655296305ddb5fb4cf 196 SUPERFAMILY SSF142695 3 173 1.57E-66 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CS348_11325 1e59d5bfc7e0d7655296305ddb5fb4cf 196 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 1.2E-92 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CS348_11325 1e59d5bfc7e0d7655296305ddb5fb4cf 196 Gene3D G3DSA:3.40.50.10990 1 174 3.5E-77 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CS348_11325 1e59d5bfc7e0d7655296305ddb5fb4cf 196 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 48.344 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CS348_11325 1e59d5bfc7e0d7655296305ddb5fb4cf 196 Pfam PF00925 GTP cyclohydrolase II 5 170 4.2E-67 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 301 314 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CS348_04525 b984f9f50b589266c7a98ae972e65307 658 TIGRFAM TIGR01273 speA: arginine decarboxylase 31 656 5.5E-280 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 657 43.576 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 Gene3D G3DSA:3.20.20.10 93 369 8.9E-237 T 13-10-2018 IPR029066 PLP-binding barrel CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PIRSF PIRSF001336 17 658 2.2E-256 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 488 509 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 170 185 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 220 242 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 347 364 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 116 130 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 566 587 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 196 217 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 513 538 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01180 Arginine decarboxylase signature 92 107 1.7E-74 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 SUPERFAMILY SSF50621 482 584 4.88E-7 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 Gene3D G3DSA:1.20.58.930 386 481 8.9E-237 T 13-10-2018 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 SUPERFAMILY SSF51419 92 369 1.27E-67 T 13-10-2018 IPR029066 PLP-binding barrel CS348_04525 b984f9f50b589266c7a98ae972e65307 658 Gene3D G3DSA:2.40.37.10 39 590 8.9E-237 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 100 367 3.2E-72 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 263 276 7.6E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 566 579 7.6E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 124 142 7.6E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 146 158 7.6E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 357 376 7.6E-19 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CS348_04525 b984f9f50b589266c7a98ae972e65307 658 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 124 142 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 SMART SM00304 364 416 1.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 Gene3D G3DSA:1.10.287.130 423 509 1.3E-16 T 13-10-2018 CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 PIRSF PIRSF037119 403 665 4.1E-126 T 13-10-2018 IPR017116 Signal transduction histidine kinase, PgtB CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 PIRSF PIRSF037119 5 407 8.4E-134 T 13-10-2018 IPR017116 Signal transduction histidine kinase, PgtB CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 Pfam PF00512 His Kinase A (phospho-acceptor) domain 449 512 1.6E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 SUPERFAMILY SSF47384 434 511 1.63E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 Gene3D G3DSA:3.30.565.10 510 661 5.5E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 SMART SM00388 447 515 1.0E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 557 660 7.6E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 SMART SM00387 557 663 3.1E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_07645 8b994864794a23ad3a9b17083215b3e4 668 SUPERFAMILY SSF55874 514 661 2.75E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_02390 2ae8286a024ba3e0ab81aed4327973fa 309 SUPERFAMILY SSF46785 4 108 9.54E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_02390 2ae8286a024ba3e0ab81aed4327973fa 309 Gene3D G3DSA:3.40.190.290 92 293 1.3E-52 T 13-10-2018 CS348_02390 2ae8286a024ba3e0ab81aed4327973fa 309 Pfam PF03466 LysR substrate binding domain 90 290 5.4E-39 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_02390 2ae8286a024ba3e0ab81aed4327973fa 309 SUPERFAMILY SSF53850 90 292 1.55E-39 T 13-10-2018 CS348_02390 2ae8286a024ba3e0ab81aed4327973fa 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.6E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_02390 2ae8286a024ba3e0ab81aed4327973fa 309 Gene3D G3DSA:1.10.10.10 3 87 4.6E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16860 b8be5277277f834003417a6c74244676 554 PIRSF PIRSF001589 363 508 1.4E-28 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 CS348_16860 b8be5277277f834003417a6c74244676 554 PIRSF PIRSF001589 1 372 2.8E-109 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 CS348_16860 b8be5277277f834003417a6c74244676 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 372 2.9E-125 T 13-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 CS348_16860 b8be5277277f834003417a6c74244676 554 Gene3D G3DSA:3.60.20.10 2 193 1.4E-74 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_16860 b8be5277277f834003417a6c74244676 554 Pfam PF13537 Glutamine amidotransferase domain 48 166 1.3E-41 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain CS348_16860 b8be5277277f834003417a6c74244676 554 SUPERFAMILY SSF52402 210 479 1.26E-75 T 13-10-2018 CS348_16860 b8be5277277f834003417a6c74244676 554 Pfam PF00733 Asparagine synthase 212 366 9.4E-60 T 13-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 CS348_16860 b8be5277277f834003417a6c74244676 554 Gene3D G3DSA:3.40.50.620 194 514 3.5E-118 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16860 b8be5277277f834003417a6c74244676 554 SUPERFAMILY SSF56235 1 196 5.4E-57 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_04390 863f63c40197b3961a92875087d8e719 360 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 1 359 64.617 T 13-10-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 CS348_04390 863f63c40197b3961a92875087d8e719 360 SUPERFAMILY SSF53955 192 358 2.08E-36 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_04390 863f63c40197b3961a92875087d8e719 360 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 214 242 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 CS348_04390 863f63c40197b3961a92875087d8e719 360 Pfam PF11873 Domain of unknown function (DUF3393) 3 192 5.2E-74 T 13-10-2018 IPR024570 Murein transglycosylase-C, N-terminal CS348_04390 863f63c40197b3961a92875087d8e719 360 Gene3D G3DSA:1.10.530.10 179 355 1.1E-48 T 13-10-2018 CS348_04390 863f63c40197b3961a92875087d8e719 360 Pfam PF01464 Transglycosylase SLT domain 197 320 5.7E-31 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_08820 638c11d4ebf303e0d9da879ff110d324 305 SUPERFAMILY SSF53850 26 303 7.06E-60 T 13-10-2018 CS348_08820 638c11d4ebf303e0d9da879ff110d324 305 Gene3D G3DSA:3.40.190.10 28 302 1.8E-99 T 13-10-2018 CS348_08820 638c11d4ebf303e0d9da879ff110d324 305 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 26 300 9.8E-60 T 13-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 CS348_08820 638c11d4ebf303e0d9da879ff110d324 305 Gene3D G3DSA:3.40.190.120 129 242 1.8E-99 T 13-10-2018 CS348_19590 2d5ea68b2b5e2575b2563c70c0de3d14 187 SMART SM00644 16 166 7.5E-61 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_19590 2d5ea68b2b5e2575b2563c70c0de3d14 187 SUPERFAMILY SSF55846 2 179 1.44E-68 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_19590 2d5ea68b2b5e2575b2563c70c0de3d14 187 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 29 167 4.1E-26 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_19590 2d5ea68b2b5e2575b2563c70c0de3d14 187 Gene3D G3DSA:3.40.80.10 2 187 1.2E-63 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 SMART SM00967 109 184 4.0E-9 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 SUPERFAMILY SSF75217 188 343 1.37E-36 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 Pfam PF00588 SpoU rRNA Methylase family 199 336 5.5E-28 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 PIRSF PIRSF006280 1 345 4.2E-167 T 13-10-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 Gene3D G3DSA:3.40.1280.10 178 345 1.2E-36 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 SUPERFAMILY SSF55315 103 179 7.06E-10 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 110 181 1.4E-12 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CS348_06560 b493ba33b6dde83a39e0b3a6f1ef4acf 345 Gene3D G3DSA:3.30.1330.30 97 177 5.9E-5 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CS348_21175 6c9134953100cac27fdcc46a9b148f8d 343 SUPERFAMILY SSF50129 10 176 2.04E-37 T 13-10-2018 IPR011032 GroES-like superfamily CS348_21175 6c9134953100cac27fdcc46a9b148f8d 343 Gene3D G3DSA:3.40.50.720 157 290 2.8E-83 T 13-10-2018 CS348_21175 6c9134953100cac27fdcc46a9b148f8d 343 SUPERFAMILY SSF51735 145 306 3.08E-31 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_21175 6c9134953100cac27fdcc46a9b148f8d 343 Gene3D G3DSA:3.90.180.10 28 327 2.8E-83 T 13-10-2018 CS348_21175 6c9134953100cac27fdcc46a9b148f8d 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 139 2.6E-26 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_21175 6c9134953100cac27fdcc46a9b148f8d 343 Pfam PF00107 Zinc-binding dehydrogenase 180 304 1.3E-23 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_17295 13dac586132557cd8f681534ff06d5d8 264 Gene3D G3DSA:3.40.50.300 8 260 4.9E-65 T 13-10-2018 CS348_17295 13dac586132557cd8f681534ff06d5d8 264 Pfam PF00005 ABC transporter 24 171 4.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_17295 13dac586132557cd8f681534ff06d5d8 264 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_17295 13dac586132557cd8f681534ff06d5d8 264 SUPERFAMILY SSF52540 8 233 3.75E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17295 13dac586132557cd8f681534ff06d5d8 264 SMART SM00382 32 238 3.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_12810 9dd91969a181f77da5a84d1cc2dc0d90 201 SUPERFAMILY SSF47616 83 199 4.59E-28 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_12810 9dd91969a181f77da5a84d1cc2dc0d90 201 Gene3D G3DSA:3.40.30.10 3 191 1.1E-68 T 13-10-2018 CS348_12810 9dd91969a181f77da5a84d1cc2dc0d90 201 Pfam PF13409 Glutathione S-transferase, N-terminal domain 15 75 2.0E-8 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_12810 9dd91969a181f77da5a84d1cc2dc0d90 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 189 1.1E-14 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CS348_12810 9dd91969a181f77da5a84d1cc2dc0d90 201 SUPERFAMILY SSF52833 1 79 1.1E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_12810 9dd91969a181f77da5a84d1cc2dc0d90 201 Gene3D G3DSA:1.20.1050.10 82 188 1.1E-68 T 13-10-2018 CS348_21440 807ff1aa9d35833066c83b17783531b8 340 Gene3D G3DSA:3.40.50.720 7 327 6.2E-94 T 13-10-2018 CS348_21440 807ff1aa9d35833066c83b17783531b8 340 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 125 1.0E-20 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_21440 807ff1aa9d35833066c83b17783531b8 340 SUPERFAMILY SSF51735 2 152 5.49E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_21440 807ff1aa9d35833066c83b17783531b8 340 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 4 333 1.0E-113 T 13-10-2018 IPR030827 Inositol 2-dehydrogenase CS348_21440 807ff1aa9d35833066c83b17783531b8 340 Gene3D G3DSA:3.30.360.10 144 274 6.2E-94 T 13-10-2018 CS348_21440 807ff1aa9d35833066c83b17783531b8 340 SUPERFAMILY SSF55347 130 295 1.2E-29 T 13-10-2018 CS348_11450 14bf2eadf00a758590da4035ab9c190c 46 Gene3D G3DSA:3.90.210.10 1 45 1.6E-9 T 13-10-2018 CS348_11450 14bf2eadf00a758590da4035ab9c190c 46 SUPERFAMILY SSF56399 2 33 1.53E-5 T 13-10-2018 CS348_11450 14bf2eadf00a758590da4035ab9c190c 46 Pfam PF02917 Pertussis toxin, subunit 1 2 35 1.9E-4 T 13-10-2018 IPR003898 Bordetella pertussis toxin A GO:0003950|GO:0005576|GO:0009405 CS348_00850 d358230df221d784e0f2d2f6d8b4a112 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 416 5.3E-131 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CS348_00850 d358230df221d784e0f2d2f6d8b4a112 425 PIRSF PIRSF006066 1 425 1.5E-137 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 CS348_00850 d358230df221d784e0f2d2f6d8b4a112 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 418 2.3E-154 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 175 3.8E-31 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 SUPERFAMILY SSF52467 167 321 2.77E-26 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 SUPERFAMILY SSF52518 5 180 5.4E-41 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 Gene3D G3DSA:3.40.50.970 356 542 4.1E-59 T 13-10-2018 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 SUPERFAMILY SSF52518 355 538 2.5E-44 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 526 3.1E-18 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 Gene3D G3DSA:3.40.50.1220 194 340 9.3E-35 T 13-10-2018 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 318 9.8E-17 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 PIRSF PIRSF036565 1 550 9.4E-197 T 13-10-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CS348_07595 fdee2b0a2b790aebff8f97a80de9dc3f 550 Gene3D G3DSA:3.40.50.970 1 185 2.4E-79 T 13-10-2018 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 142 219 1.9E-12 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 Pfam PF03477 ATP cone domain 6 92 1.7E-15 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 SUPERFAMILY SSF51998 222 740 1.43E-170 T 13-10-2018 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 Gene3D G3DSA:3.20.70.20 209 732 2.9E-159 T 13-10-2018 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.8E-181 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 Gene3D G3DSA:1.10.1650.20 341 394 2.9E-159 T 13-10-2018 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 SUPERFAMILY SSF48168 10 221 3.53E-74 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 3.4E-120 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 5.4E-39 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 5.4E-39 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 5.4E-39 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 5.4E-39 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 5.4E-39 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_08270 65a7220a18b74aa333b6be3a4ee8455a 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 5.4E-39 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 Gene3D G3DSA:3.40.50.150 1 158 2.3E-61 T 13-10-2018 CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.802 T 13-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 SUPERFAMILY SSF53335 154 315 1.43E-32 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 Gene3D G3DSA:3.40.50.150 159 342 3.1E-57 T 13-10-2018 CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 Pfam PF05175 Methyltransferase small domain 167 333 1.8E-61 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_20855 6dea2f3afd38e9bd0462a28d505ff0ac 342 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 1.1E-56 T 13-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 Gene3D G3DSA:3.40.50.300 261 499 1.1E-46 T 13-10-2018 CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 SUPERFAMILY SSF52540 250 483 6.12E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 Gene3D G3DSA:3.40.50.300 1 247 1.8E-54 T 13-10-2018 CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 Pfam PF00005 ABC transporter 269 423 9.1E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 SMART SM00382 29 231 4.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 SMART SM00382 277 472 1.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 SUPERFAMILY SSF52540 4 231 1.07E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24390 26d6631893fbfdb23d9a9b267b121613 501 Pfam PF00005 ABC transporter 22 169 5.9E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_02105 389919749e70ffc67e9bf46e53468622 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 1.9E-51 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02105 389919749e70ffc67e9bf46e53468622 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 3.7E-32 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P CS348_02105 389919749e70ffc67e9bf46e53468622 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.536 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 CS348_02105 389919749e70ffc67e9bf46e53468622 144 Gene3D G3DSA:3.100.10.10 70 144 3.5E-12 T 13-10-2018 CS348_02105 389919749e70ffc67e9bf46e53468622 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 13-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02105 389919749e70ffc67e9bf46e53468622 144 SUPERFAMILY SSF52080 4 143 1.83E-46 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily CS348_11430 44619b1f35435289e8cdbeb65e50ad2b 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 16 66 4.5E-10 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CS348_11430 44619b1f35435289e8cdbeb65e50ad2b 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 292 4.2E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_11430 44619b1f35435289e8cdbeb65e50ad2b 296 Gene3D G3DSA:1.10.3720.10 85 292 1.1E-16 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11430 44619b1f35435289e8cdbeb65e50ad2b 296 SUPERFAMILY SSF161098 90 275 2.09E-20 T 13-10-2018 IPR035906 MetI-like superfamily CS348_22770 327f2dc31f273965c120a961deb5f905 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.349 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CS348_22770 327f2dc31f273965c120a961deb5f905 354 Gene3D G3DSA:3.20.20.210 1 354 1.1E-165 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CS348_22770 327f2dc31f273965c120a961deb5f905 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 6.3E-136 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CS348_22770 327f2dc31f273965c120a961deb5f905 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CS348_22770 327f2dc31f273965c120a961deb5f905 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 1.0E-141 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CS348_22770 327f2dc31f273965c120a961deb5f905 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CS348_22770 327f2dc31f273965c120a961deb5f905 354 SUPERFAMILY SSF51726 1 352 8.2E-122 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CS348_18235 8c23f0211081747be65f8645af1065d3 265 Gene3D G3DSA:1.10.3720.10 12 263 5.8E-48 T 13-10-2018 IPR035906 MetI-like superfamily CS348_18235 8c23f0211081747be65f8645af1065d3 265 SUPERFAMILY SSF161098 18 253 1.87E-47 T 13-10-2018 IPR035906 MetI-like superfamily CS348_18235 8c23f0211081747be65f8645af1065d3 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 262 1.0E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_18235 8c23f0211081747be65f8645af1065d3 265 TIGRFAM TIGR03255 PhnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV 2 264 3.5E-140 T 13-10-2018 IPR017661 2-aminoethylphosphonate ABC transport system, membrane component PhnV GO:0016020 CS348_12465 7260553d7f41c1ff8fc58f2e568821e1 175 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 25 167 2.6E-49 T 13-10-2018 IPR008136 CinA, C-terminal CS348_12465 7260553d7f41c1ff8fc58f2e568821e1 175 Pfam PF02464 Competence-damaged protein 19 168 4.9E-49 T 13-10-2018 IPR008136 CinA, C-terminal CS348_12465 7260553d7f41c1ff8fc58f2e568821e1 175 Gene3D G3DSA:3.90.950.20 1 172 7.6E-52 T 13-10-2018 IPR036653 CinA-like, C-terminal CS348_12465 7260553d7f41c1ff8fc58f2e568821e1 175 SUPERFAMILY SSF142433 16 171 5.23E-42 T 13-10-2018 IPR036653 CinA-like, C-terminal CS348_25355 5b6a9ae0ba94393c3c6706e8bde0cd99 138 TIGRFAM TIGR02744 TrbI_Ftype: type-F conjugative transfer system protein TrbI 32 134 1.4E-27 T 13-10-2018 IPR014115 Type-F conjugative transfer system protein TrbI CS348_25355 5b6a9ae0ba94393c3c6706e8bde0cd99 138 Pfam PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) 31 133 2.8E-30 T 13-10-2018 IPR014115 Type-F conjugative transfer system protein TrbI CS348_12975 1e8ae78c60b913633367d272b2d7c9e2 88 Pfam PF01313 Bacterial export proteins, family 3 7 77 3.1E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_12975 1e8ae78c60b913633367d272b2d7c9e2 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 6.4E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_12975 1e8ae78c60b913633367d272b2d7c9e2 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 6.4E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_12975 1e8ae78c60b913633367d272b2d7c9e2 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 6.4E-24 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_12975 1e8ae78c60b913633367d272b2d7c9e2 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 1.7E-34 T 13-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 CS348_12975 1e8ae78c60b913633367d272b2d7c9e2 88 PIRSF PIRSF004669 1 87 1.4E-25 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 CS348_19080 960217491b11f551fcb465484e9d47bc 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 1 148 8.3E-60 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain CS348_19080 960217491b11f551fcb465484e9d47bc 235 SUPERFAMILY SSF118196 1 229 4.84E-85 T 13-10-2018 IPR036413 YaeB-like superfamily CS348_19080 960217491b11f551fcb465484e9d47bc 235 Gene3D G3DSA:3.30.2310.10 148 230 9.3E-21 T 13-10-2018 CS348_19080 960217491b11f551fcb465484e9d47bc 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 5.6E-40 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain CS348_19080 960217491b11f551fcb465484e9d47bc 235 Gene3D G3DSA:2.40.30.70 24 147 1.4E-48 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily CS348_19080 960217491b11f551fcb465484e9d47bc 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 13-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site CS348_08715 caab4e49239bdea6a9a2b891fc2d3a7b 81 ProDom PD058881 MEMBRANE TRANSMEMBRANE YEIS INNER 3 81 8.0E-41 T 13-10-2018 IPR020155 Uncharacterised protein family YeiS GO:0016021 CS348_08715 caab4e49239bdea6a9a2b891fc2d3a7b 81 Pfam PF10808 Protein of unknown function (DUF2542) 3 81 1.5E-47 T 13-10-2018 IPR020155 Uncharacterised protein family YeiS GO:0016021 CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 SUPERFAMILY SSF52540 3 189 3.28E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 Pfam PF00625 Guanylate kinase 5 186 6.1E-70 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 Gene3D G3DSA:3.40.50.300 8 183 6.1E-77 T 13-10-2018 CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 38.369 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 Gene3D G3DSA:3.30.63.10 37 96 6.1E-77 T 13-10-2018 CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 2.9E-76 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 SMART SM00072 3 187 2.0E-88 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CS348_00510 92c6b7b9ac41477566ad4fbdfa5cb4d5 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 SUPERFAMILY SSF55120 69 234 6.78E-43 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 Gene3D G3DSA:3.10.290.10 1 61 6.3E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 Pfam PF01479 S4 domain 4 43 4.6E-12 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 Gene3D G3DSA:3.30.2350.10 62 251 5.2E-52 T 13-10-2018 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 SMART SM00363 3 74 2.8E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 233 6.7E-64 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 Pfam PF00849 RNA pseudouridylate synthase 69 199 7.4E-16 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_11260 ea63b0d7cdb620b3faf683b633970f3e 291 SUPERFAMILY SSF55174 5 98 9.57E-14 T 13-10-2018 CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 2.8E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 138 2.8E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 2.8E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 59 291 5.3E-57 T 13-10-2018 CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 186 214 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 Gene3D G3DSA:3.40.50.720 1 294 3.4E-92 T 13-10-2018 CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 SUPERFAMILY SSF51735 48 293 2.45E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 255 275 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 51 68 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 218 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 138 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 237 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_03500 e4df0a627ab6624cb1aff1ba7be74708 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 189 7.6E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_16030 7833075fb3932e456213428990af730a 296 SUPERFAMILY SSF53850 90 295 7.41E-38 T 13-10-2018 CS348_16030 7833075fb3932e456213428990af730a 296 Gene3D G3DSA:1.10.10.10 3 91 3.1E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16030 7833075fb3932e456213428990af730a 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.7E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_16030 7833075fb3932e456213428990af730a 296 Pfam PF03466 LysR substrate binding domain 90 293 7.8E-35 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_16030 7833075fb3932e456213428990af730a 296 SUPERFAMILY SSF46785 1 113 1.16E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16030 7833075fb3932e456213428990af730a 296 Gene3D G3DSA:3.40.190.290 92 296 6.2E-37 T 13-10-2018 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 Pfam PF00672 HAMP domain 228 277 1.6E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 SMART SM00283 281 528 4.8E-85 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 SUPERFAMILY SSF58104 248 529 4.97E-72 T 13-10-2018 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 Pfam PF02203 Tar ligand binding domain homologue 15 182 3.9E-35 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 Gene3D G3DSA:1.10.287.950 228 530 1.0E-90 T 13-10-2018 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 456 485 2.8E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 19 44 2.8E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 302 331 2.8E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 379 406 2.8E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 408 437 2.8E-60 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 496 2.9E-55 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 SUPERFAMILY SSF47170 31 179 1.83E-26 T 13-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 SMART SM00319 51 190 1.8E-30 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 Gene3D G3DSA:1.20.120.30 38 199 6.9E-9 T 13-10-2018 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 SMART SM00304 228 280 1.6E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_11845 520f4d227e31015016aa3aac1309f5a9 541 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 306 328 - T 13-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 SUPERFAMILY SSF64288 64 237 4.08E-41 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 SMART SM00345 17 76 9.7E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 12 239 1.5E-99 T 13-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 SMART SM00866 97 234 2.3E-30 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.9E-8 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 Gene3D G3DSA:3.40.1410.10 95 230 1.7E-30 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 Gene3D G3DSA:1.10.10.10 11 80 2.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 SUPERFAMILY SSF46785 7 99 1.68E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 Pfam PF07702 UTRA domain 98 234 4.7E-34 T 13-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 CS348_16390 b95699d1ee1e2fbc23c69f5178f1e190 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 3.2E-21 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 Gene3D G3DSA:3.30.70.1450 321 395 5.0E-14 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 Pfam PF02080 TrkA-C domain 229 301 9.6E-13 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 Pfam PF02080 TrkA-C domain 324 387 6.9E-11 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 Pfam PF03600 Citrate transporter 428 605 2.3E-20 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 Gene3D G3DSA:3.30.70.1450 216 299 4.6E-12 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 556 572 - T 13-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 SUPERFAMILY SSF116726 229 287 3.01E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 SUPERFAMILY SSF116726 320 389 1.96E-15 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_07980 8a4dc0550378e26623581c0547fd5a45 608 Pfam PF03600 Citrate transporter 16 208 1.4E-37 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 CS348_10690 bb3d7a075e9b6c818cd87c6be7e17b99 192 Pfam PF00293 NUDIX domain 30 143 4.8E-14 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_10690 bb3d7a075e9b6c818cd87c6be7e17b99 192 Gene3D G3DSA:3.90.79.10 9 186 1.2E-48 T 13-10-2018 CS348_10690 bb3d7a075e9b6c818cd87c6be7e17b99 192 SUPERFAMILY SSF55811 9 181 1.49E-34 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_10690 bb3d7a075e9b6c818cd87c6be7e17b99 192 ProSitePatterns PS01293 Nudix CoA signature. 47 67 - T 13-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 Pfam PF02780 Transketolase, C-terminal domain 189 309 9.8E-34 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 Gene3D G3DSA:3.40.50.920 189 317 3.8E-44 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 Pfam PF02779 Transketolase, pyrimidine binding domain 13 169 2.0E-19 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 Gene3D G3DSA:3.40.50.970 4 188 1.9E-37 T 13-10-2018 CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 SMART SM00861 13 178 7.5E-22 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 SUPERFAMILY SSF52518 9 174 8.57E-36 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_07945 d65839f6109fba67d9c82b7795a80ec4 317 SUPERFAMILY SSF52922 185 317 3.8E-37 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_05960 5e4034638a7c61a869a668fabe96b9b6 518 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 518 229.336 T 13-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CS348_05960 5e4034638a7c61a869a668fabe96b9b6 518 Gene3D G3DSA:3.30.590.20 18 416 1.3E-164 T 13-10-2018 CS348_05960 5e4034638a7c61a869a668fabe96b9b6 518 Gene3D G3DSA:3.30.590.20 417 518 2.3E-27 T 13-10-2018 CS348_05960 5e4034638a7c61a869a668fabe96b9b6 518 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 517 4.2E-287 T 13-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CS348_05960 5e4034638a7c61a869a668fabe96b9b6 518 SUPERFAMILY SSF55931 4 514 1.77E-204 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CS348_05960 5e4034638a7c61a869a668fabe96b9b6 518 Pfam PF04262 Glutamate-cysteine ligase 9 380 3.4E-173 T 13-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 SUPERFAMILY SSF46689 197 248 1.36E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 198 240 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 228 244 3.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 213 228 3.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 Gene3D G3DSA:1.10.10.60 141 253 5.5E-26 T 13-10-2018 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 SMART SM00342 162 244 9.3E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_22195 241b819f4b87d8a6349c270a74d29d4a 253 Pfam PF12833 Helix-turn-helix domain 169 244 9.2E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_14200 fcb44ec7cf5bfff17246753fb50dd0db 137 Gene3D G3DSA:2.40.50.110 24 137 2.1E-51 T 13-10-2018 CS348_14200 fcb44ec7cf5bfff17246753fb50dd0db 137 Pfam PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain 30 133 4.6E-8 T 13-10-2018 IPR020063 Bordetella pertussis toxin B, subunit 2/3, C-terminal GO:0005576|GO:0009405 CS348_14200 fcb44ec7cf5bfff17246753fb50dd0db 137 SUPERFAMILY SSF50203 23 134 5.13E-39 T 13-10-2018 IPR008992 Enterotoxin GO:0009405 CS348_06465 6a57c602a5b22530754e22fa91c51149 302 Gene3D G3DSA:2.120.10.30 2 288 3.2E-85 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CS348_06465 6a57c602a5b22530754e22fa91c51149 302 SUPERFAMILY SSF63829 7 285 6.38E-62 T 13-10-2018 CS348_06465 6a57c602a5b22530754e22fa91c51149 302 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 14 254 2.4E-76 T 13-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region CS348_06465 6a57c602a5b22530754e22fa91c51149 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 194 211 8.5E-22 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) CS348_06465 6a57c602a5b22530754e22fa91c51149 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 236 254 8.5E-22 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) CS348_06465 6a57c602a5b22530754e22fa91c51149 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 15 32 8.5E-22 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) CS348_06465 6a57c602a5b22530754e22fa91c51149 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 132 154 8.5E-22 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) CS348_06465 6a57c602a5b22530754e22fa91c51149 302 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 91 112 8.5E-22 T 13-10-2018 IPR005511 Senescence marker protein-30 (SMP-30) CS348_08500 3e54a525d1ee63e3066b89a112391223 396 TIGRFAM TIGR00880 2_A_01_02: multidrug resistance protein 52 188 1.9E-41 T 13-10-2018 IPR004734 Multidrug resistance protein GO:0015238|GO:0015893|GO:0016021 Reactome: R-HSA-442660 CS348_08500 3e54a525d1ee63e3066b89a112391223 396 SUPERFAMILY SSF103473 8 395 2.62E-71 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_08500 3e54a525d1ee63e3066b89a112391223 396 Gene3D G3DSA:1.20.1720.10 11 389 1.3E-100 T 13-10-2018 CS348_08500 3e54a525d1ee63e3066b89a112391223 396 Pfam PF07690 Major Facilitator Superfamily 16 358 5.9E-45 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08500 3e54a525d1ee63e3066b89a112391223 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 390 8.2E-157 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 SUPERFAMILY SSF56935 65 724 1.43E-115 T 13-10-2018 CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 75 724 3.9E-162 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 Pfam PF00593 TonB dependent receptor 272 723 5.5E-49 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 13-10-2018 IPR010916 TonB box, conserved site CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 Pfam PF07715 TonB-dependent Receptor Plug Domain 73 172 5.3E-13 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 707 724 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 Gene3D G3DSA:2.170.130.10 50 182 7.5E-35 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_14390 2841624578429353c1a3ba6ecd5c5452 724 Gene3D G3DSA:2.40.170.20 185 724 2.3E-154 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_02670 15751f31a5d823d409ca74152dfbfd17 270 Pfam PF00005 ABC transporter 25 172 1.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_02670 15751f31a5d823d409ca74152dfbfd17 270 SMART SM00382 33 229 4.6E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_02670 15751f31a5d823d409ca74152dfbfd17 270 Gene3D G3DSA:3.40.50.300 6 251 8.3E-64 T 13-10-2018 CS348_02670 15751f31a5d823d409ca74152dfbfd17 270 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_02670 15751f31a5d823d409ca74152dfbfd17 270 SUPERFAMILY SSF52540 8 237 2.77E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02900 c39540fec268573dede8fd2bdce7cc78 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 62.061 T 13-10-2018 IPR023070 DnaA initiator-associating protein CS348_02900 c39540fec268573dede8fd2bdce7cc78 196 Pfam PF13580 SIS domain 9 144 3.3E-33 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_02900 c39540fec268573dede8fd2bdce7cc78 196 Gene3D G3DSA:3.40.50.10490 2 196 7.0E-70 T 13-10-2018 CS348_02900 c39540fec268573dede8fd2bdce7cc78 196 SUPERFAMILY SSF53697 4 191 7.48E-51 T 13-10-2018 CS348_13365 9f53326f16a3f640def4e2e50c1f297b 154 SUPERFAMILY SSF54001 33 154 2.13E-39 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_13365 9f53326f16a3f640def4e2e50c1f297b 154 Pfam PF00877 NlpC/P60 family 47 153 2.2E-29 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CS348_13365 9f53326f16a3f640def4e2e50c1f297b 154 Gene3D G3DSA:3.90.1720.10 35 154 2.1E-39 T 13-10-2018 CS348_11540 b365b4b13d3e117be4c00d12b4294c61 242 Gene3D G3DSA:3.40.630.10 1 237 2.3E-58 T 13-10-2018 CS348_11540 b365b4b13d3e117be4c00d12b4294c61 242 Pfam PF00246 Zinc carboxypeptidase 43 157 3.1E-12 T 13-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 CS348_11540 b365b4b13d3e117be4c00d12b4294c61 242 SUPERFAMILY SSF53187 18 233 1.89E-34 T 13-10-2018 CS348_20090 85ce4712a63b06af86da82544b29a7a1 433 PIRSF PIRSF015658 1 431 1.3E-177 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 CS348_20090 85ce4712a63b06af86da82544b29a7a1 433 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 429 1.8E-158 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 CS348_20090 85ce4712a63b06af86da82544b29a7a1 433 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 425 1.0E-195 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 CS348_02470 85ce4712a63b06af86da82544b29a7a1 433 PIRSF PIRSF015658 1 431 1.3E-177 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 CS348_02470 85ce4712a63b06af86da82544b29a7a1 433 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 429 1.8E-158 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 CS348_02470 85ce4712a63b06af86da82544b29a7a1 433 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 425 1.0E-195 T 13-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 CS348_02425 6909765d370285e10099c5a044cb5128 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 60.261 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_02425 6909765d370285e10099c5a044cb5128 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 4.8E-24 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_02425 6909765d370285e10099c5a044cb5128 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 4.8E-24 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_02425 6909765d370285e10099c5a044cb5128 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 4.8E-24 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_02425 6909765d370285e10099c5a044cb5128 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 4.8E-24 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_02425 6909765d370285e10099c5a044cb5128 156 SUPERFAMILY SSF55252 82 151 2.88E-19 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 CS348_02425 6909765d370285e10099c5a044cb5128 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 4.0E-31 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CS348_02425 6909765d370285e10099c5a044cb5128 156 Gene3D G3DSA:3.30.1360.40 79 156 1.6E-31 T 13-10-2018 CS348_02425 6909765d370285e10099c5a044cb5128 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 9 152 2.5E-47 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_02425 6909765d370285e10099c5a044cb5128 156 SUPERFAMILY SSF46785 3 77 1.45E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_02425 6909765d370285e10099c5a044cb5128 156 Pfam PF01316 Arginine repressor, DNA binding domain 5 74 7.4E-25 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 CS348_02425 6909765d370285e10099c5a044cb5128 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 1.6E-22 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CS348_02425 6909765d370285e10099c5a044cb5128 156 Gene3D G3DSA:1.10.10.10 1 78 4.9E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 SUPERFAMILY SSF55811 5 160 4.87E-33 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 Pfam PF00293 NUDIX domain 7 146 9.7E-26 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 PRINTS PR00502 NUDIX hydrolase family signature 33 47 8.7E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 PRINTS PR00502 NUDIX hydrolase family signature 47 62 8.7E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.823 T 13-10-2018 IPR022927 RNA pyrophosphohydrolase RppH CS348_04975 79516fc3eeb2e20b81f19116d2d5d137 176 Gene3D G3DSA:3.90.79.10 1 160 1.9E-51 T 13-10-2018 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 SMART SM00354 2 72 4.3E-32 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 Gene3D G3DSA:3.40.50.2300 56 306 5.8E-68 T 13-10-2018 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 Gene3D G3DSA:3.40.50.2300 162 291 5.8E-68 T 13-10-2018 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 Gene3D G3DSA:1.10.260.40 2 55 1.1E-22 T 13-10-2018 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 SUPERFAMILY SSF53822 62 334 9.26E-75 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 SUPERFAMILY SSF47413 2 60 1.09E-18 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 4 14 4.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 14 24 4.1E-5 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 Pfam PF13377 Periplasmic binding protein-like domain 170 330 2.1E-31 T 13-10-2018 CS348_04935 7fc3ad33018341f12d4e1643c6195be5 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 1.1E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_06410 4c06d1902eba740a465da3bc9d1fdbb0 263 Pfam PF01578 Cytochrome C assembly protein 36 261 6.4E-46 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CS348_04120 6b868d11241204a811af25997a597426 151 Gene3D G3DSA:1.10.10.10 3 97 1.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04120 6b868d11241204a811af25997a597426 151 Pfam PF07180 CaiF/GrlA transcriptional regulator 6 143 1.3E-28 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_04120 6b868d11241204a811af25997a597426 151 ProDom PD081346 TRANSCRIPTIONAL CAIF OPERON REGULATOR CAI ACTIVATOR TRANSCRIPTION ACTIVATORY FIX REGULATION 24 64 6.0E-4 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_23720 485e095a780274d1867e1545346cd4b1 282 SUPERFAMILY SSF52047 12 257 3.34E-12 T 13-10-2018 CS348_23720 485e095a780274d1867e1545346cd4b1 282 Gene3D G3DSA:3.80.10.10 1 280 1.9E-85 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CS348_03105 75ffc422dc83714bad9b69508c330ef6 322 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 7 312 5.5E-122 T 13-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 CS348_03105 75ffc422dc83714bad9b69508c330ef6 322 Pfam PF03741 Integral membrane protein TerC family 80 282 2.0E-56 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CS348_24005 9d43d04516d403926212e6ea20a1ed33 206 Pfam PF01810 LysE type translocator 16 202 1.0E-47 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_24005 9d43d04516d403926212e6ea20a1ed33 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 19 200 1.3E-55 T 13-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 CS348_24005 9d43d04516d403926212e6ea20a1ed33 206 PIRSF PIRSF006324 1 205 1.3E-52 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_16410 3d1ca2ebd1a91fc24182e52af5f2ad3c 331 SUPERFAMILY SSF50974 68 330 2.75E-52 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 CS348_16410 3d1ca2ebd1a91fc24182e52af5f2ad3c 331 Gene3D G3DSA:2.130.10.10 1 331 2.1E-143 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CS348_16410 3d1ca2ebd1a91fc24182e52af5f2ad3c 331 SUPERFAMILY SSF50974 5 73 4.18E-7 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 CS348_16410 3d1ca2ebd1a91fc24182e52af5f2ad3c 331 Pfam PF10282 Lactonase, 7-bladed beta-propeller 6 327 5.4E-88 T 13-10-2018 IPR019405 Lactonase, 7-bladed beta propeller CS348_16410 3d1ca2ebd1a91fc24182e52af5f2ad3c 331 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 55.804 T 13-10-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 CS348_17180 2ae7ea016edf7239c22f8af689ccdcec 185 Gene3D G3DSA:3.30.70.20 4 32 3.1E-6 T 13-10-2018 CS348_17180 2ae7ea016edf7239c22f8af689ccdcec 185 Pfam PF13247 4Fe-4S dicluster domain 52 142 7.0E-27 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_17180 2ae7ea016edf7239c22f8af689ccdcec 185 SUPERFAMILY SSF54862 1 152 3.45E-59 T 13-10-2018 CS348_17180 2ae7ea016edf7239c22f8af689ccdcec 185 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_17180 2ae7ea016edf7239c22f8af689ccdcec 185 Pfam PF12800 4Fe-4S binding domain 9 23 0.019 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_17180 2ae7ea016edf7239c22f8af689ccdcec 185 Gene3D G3DSA:3.30.70.20 39 183 1.2E-43 T 13-10-2018 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 Gene3D G3DSA:3.40.640.10 83 436 6.2E-102 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 6.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 6.6E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 SMART SM00345 7 66 1.5E-17 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 Pfam PF00155 Aminotransferase class I and II 126 411 1.4E-18 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.5E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 SUPERFAMILY SSF53383 62 443 1.96E-75 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 SUPERFAMILY SSF46785 1 68 2.13E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_06045 ec3722d66a0e36f715e0408fbd3a5f0c 444 Gene3D G3DSA:1.10.10.10 1 67 4.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12160 e6cae8bd187b513b0acd86a6390102c1 218 SUPERFAMILY SSF81342 3 211 1.8E-54 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_12160 e6cae8bd187b513b0acd86a6390102c1 218 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 206 8.1E-70 T 13-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 CS348_12160 e6cae8bd187b513b0acd86a6390102c1 218 Gene3D G3DSA:1.20.950.20 1 217 3.2E-85 T 13-10-2018 CS348_12160 e6cae8bd187b513b0acd86a6390102c1 218 Pfam PF01292 Prokaryotic cytochrome b561 12 186 2.9E-19 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_09610 7b42cdc67530eb9c6458c9b24d7e16a9 498 SUPERFAMILY SSF56801 6 495 1.44E-54 T 13-10-2018 CS348_09610 7b42cdc67530eb9c6458c9b24d7e16a9 498 Gene3D G3DSA:3.40.50.12780 4 397 6.3E-45 T 13-10-2018 CS348_09610 7b42cdc67530eb9c6458c9b24d7e16a9 498 Pfam PF00501 AMP-binding enzyme 13 400 4.6E-32 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_12815 7feed5da4984ccf4d38af7ea4ad8fd10 286 Pfam PF08543 Phosphomethylpyrimidine kinase 72 257 6.0E-17 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CS348_12815 7feed5da4984ccf4d38af7ea4ad8fd10 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 54.16 T 13-10-2018 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 CS348_12815 7feed5da4984ccf4d38af7ea4ad8fd10 286 Gene3D G3DSA:3.40.1190.20 1 286 2.2E-91 T 13-10-2018 IPR029056 Ribokinase-like CS348_12815 7feed5da4984ccf4d38af7ea4ad8fd10 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 285 6.4E-139 T 13-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CS348_12815 7feed5da4984ccf4d38af7ea4ad8fd10 286 SUPERFAMILY SSF53613 1 280 8.42E-77 T 13-10-2018 IPR029056 Ribokinase-like CS348_00345 c21f5c6d461bf4f01d65337295ad28c7 161 SUPERFAMILY SSF52728 3 161 3.27E-46 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_00345 c21f5c6d461bf4f01d65337295ad28c7 161 Gene3D G3DSA:3.40.35.10 1 161 1.5E-49 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_00345 c21f5c6d461bf4f01d65337295ad28c7 161 Pfam PF03830 PTS system sorbose subfamily IIB component 4 150 2.5E-44 T 13-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 CS348_13750 6c3a1f674b32e731cf775c981da46aee 452 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 440 1.8E-173 T 13-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 CS348_13750 6c3a1f674b32e731cf775c981da46aee 452 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 440 1.8E-173 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 CS348_13750 6c3a1f674b32e731cf775c981da46aee 452 Pfam PF02378 Phosphotransferase system, EIIC 30 363 4.6E-48 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_13750 6c3a1f674b32e731cf775c981da46aee 452 PIRSF PIRSF006351 1 448 2.0E-135 T 13-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 CS348_03120 8b5508d121fe243ccbe64b9fdcd14147 165 Gene3D G3DSA:3.30.2010.10 65 161 7.2E-7 T 13-10-2018 CS348_03120 8b5508d121fe243ccbe64b9fdcd14147 165 Pfam PF01863 Protein of unknown function DUF45 94 149 9.1E-11 T 13-10-2018 IPR002725 Protein of unknown function DUF45 CS348_16330 492a575d94c74adc550d07b88a660748 755 Pfam PF12468 Type III secretion system leucine rich repeat protein 109 170 7.9E-16 T 13-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 CS348_16330 492a575d94c74adc550d07b88a660748 755 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 472 680 1.1E-67 T 13-10-2018 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 MetaCyc: PWY-7511 CS348_16330 492a575d94c74adc550d07b88a660748 755 Gene3D G3DSA:3.80.10.10 140 456 2.8E-79 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily CS348_16330 492a575d94c74adc550d07b88a660748 755 SUPERFAMILY SSF52058 175 426 7.82E-39 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00369 260 284 13.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00369 370 389 150.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00369 307 326 340.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00369 346 368 70.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00369 285 305 65.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00369 199 220 110.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 345 364 0.0026 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 261 280 5.9 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 240 259 26.0 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 198 217 0.21 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 366 385 0.005 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 303 322 0.066 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 324 343 0.11 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 387 406 0.037 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 219 238 2.9 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 SMART SM00364 282 301 0.46 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 Gene3D G3DSA:3.30.2440.10 22 128 4.9E-18 T 13-10-2018 CS348_16330 492a575d94c74adc550d07b88a660748 755 Gene3D G3DSA:1.20.58.360 461 751 4.6E-93 T 13-10-2018 CS348_13530 d9c7b6e00a02245708addd02be02b90d 163 Pfam PF03245 Bacteriophage Rz lysis protein 30 153 1.9E-32 T 13-10-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 CS348_04230 2b5a1feb00a6fd55cea3e8d99c9f5f61 113 Pfam PF02635 DsrE/DsrF-like family 33 112 3.5E-7 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CS348_04230 2b5a1feb00a6fd55cea3e8d99c9f5f61 113 Gene3D G3DSA:3.40.1260.10 1 112 7.1E-22 T 13-10-2018 IPR027396 DsrEFH-like CS348_04230 2b5a1feb00a6fd55cea3e8d99c9f5f61 113 SUPERFAMILY SSF75169 3 113 7.91E-17 T 13-10-2018 IPR027396 DsrEFH-like CS348_09345 11515c5ed5bf6048a1fbf57256ea7999 192 Pfam PF13247 4Fe-4S dicluster domain 57 152 1.8E-24 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_09345 11515c5ed5bf6048a1fbf57256ea7999 192 SUPERFAMILY SSF54862 6 155 6.59E-62 T 13-10-2018 CS348_09345 11515c5ed5bf6048a1fbf57256ea7999 192 Pfam PF12800 4Fe-4S binding domain 15 28 0.0045 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_09345 11515c5ed5bf6048a1fbf57256ea7999 192 Gene3D G3DSA:3.30.70.20 43 189 2.7E-46 T 13-10-2018 CS348_09345 11515c5ed5bf6048a1fbf57256ea7999 192 Gene3D G3DSA:3.30.70.20 1 42 4.2E-7 T 13-10-2018 CS348_09345 11515c5ed5bf6048a1fbf57256ea7999 192 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 96 107 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_05525 bcf8a81b6000ea69313e0375547f38ae 249 SUPERFAMILY SSF46689 197 240 1.76E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05525 bcf8a81b6000ea69313e0375547f38ae 249 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 195 237 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_05525 bcf8a81b6000ea69313e0375547f38ae 249 Pfam PF12833 Helix-turn-helix domain 168 239 7.1E-10 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_05525 bcf8a81b6000ea69313e0375547f38ae 249 SMART SM00342 158 241 2.2E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_05525 bcf8a81b6000ea69313e0375547f38ae 249 Gene3D G3DSA:1.10.10.60 150 242 2.3E-12 T 13-10-2018 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 Gene3D G3DSA:3.40.710.10 296 476 9.2E-113 T 13-10-2018 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 19 570 46.625 T 13-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 SUPERFAMILY SSF56519 63 233 2.75E-46 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 Pfam PF03717 Penicillin-binding Protein dimerisation domain 70 220 8.1E-21 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 Gene3D G3DSA:3.30.450.330 237 550 9.2E-113 T 13-10-2018 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 Gene3D G3DSA:3.90.1310.30 59 235 4.5E-46 T 13-10-2018 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 Pfam PF00905 Penicillin binding protein transpeptidase domain 260 554 1.5E-84 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_19725 62c0d1be2fe1c4caa8948e82c223f23a 588 SUPERFAMILY SSF56601 235 563 6.28E-87 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_19460 946ab01d88a152480b260fe9a6c41abd 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_19460 946ab01d88a152480b260fe9a6c41abd 308 SMART SM00382 30 213 7.8E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_19460 946ab01d88a152480b260fe9a6c41abd 308 SUPERFAMILY SSF52540 3 232 3.79E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19460 946ab01d88a152480b260fe9a6c41abd 308 Pfam PF00005 ABC transporter 21 165 2.7E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_19460 946ab01d88a152480b260fe9a6c41abd 308 Gene3D G3DSA:3.40.50.300 2 236 6.5E-64 T 13-10-2018 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Pfam PF10371 Domain of unknown function 626 678 6.1E-23 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Gene3D G3DSA:3.40.920.10 417 623 4.7E-76 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Gene3D G3DSA:3.40.50.970 794 1167 2.3E-146 T 13-10-2018 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Gene3D G3DSA:3.40.50.920 255 414 5.8E-58 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Pfam PF13484 4Fe-4S double cluster binding domain 689 757 1.1E-9 T 13-10-2018 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Gene3D G3DSA:4.10.780.10 633 668 7.7E-6 T 13-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 244 2.1E-82 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 SUPERFAMILY SSF52518 2 254 6.87E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Gene3D G3DSA:3.30.70.20 669 791 4.2E-38 T 13-10-2018 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 SUPERFAMILY SSF52922 256 411 2.14E-43 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 PIRSF PIRSF000159 1 1174 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 SUPERFAMILY SSF53323 419 668 5.36E-75 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 954 1066 9.6E-8 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 SUPERFAMILY SSF54862 665 838 5.44E-23 T 13-10-2018 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 SMART SM00890 622 679 1.4E-29 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 347 6.0E-16 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 SUPERFAMILY SSF52518 794 1162 2.22E-117 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 608 6.1E-33 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1165 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 Gene3D G3DSA:3.40.50.970 1 254 7.4E-107 T 13-10-2018 CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_11715 94097f14639fdcb7312151c940d2ab69 1174 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_19700 01cf351f8d308cac9a22283329f9f952 414 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 359 383 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19700 01cf351f8d308cac9a22283329f9f952 414 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 43 410 41.976 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19700 01cf351f8d308cac9a22283329f9f952 414 Pfam PF01098 Cell cycle protein 47 402 1.9E-129 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19700 01cf351f8d308cac9a22283329f9f952 414 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 45 400 1.7E-134 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_25055 30942e6f1dd81ec5a0eb7cc119d2500d 225 Pfam PF11393 Type-IV b secretion system, inner-membrane complex component 48 220 5.6E-41 T 13-10-2018 IPR021055 Type-IV b secretion system, inner-membrane complex component CS348_14440 0893b6c3c1430ee70d31c4df307e61ca 332 Pfam PF00419 Fimbrial protein 191 332 1.7E-8 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_14440 0893b6c3c1430ee70d31c4df307e61ca 332 Gene3D G3DSA:2.60.40.1090 195 331 7.4E-14 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_14440 0893b6c3c1430ee70d31c4df307e61ca 332 SUPERFAMILY SSF49401 195 332 3.03E-14 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_20625 dd704a89457b10d9411652f2a1ab9163 152 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 23 131 5.2E-16 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_20625 dd704a89457b10d9411652f2a1ab9163 152 Pfam PF05069 Phage virion morphogenesis family 12 146 9.5E-22 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 Gene3D G3DSA:1.20.144.10 21 250 1.6E-97 T 13-10-2018 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 SMART SM00014 105 217 2.2E-33 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 SUPERFAMILY SSF48317 24 236 1.83E-41 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 PRINTS PR00483 Bacterial acid phosphatase class A signature 214 232 5.2E-49 T 13-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 PRINTS PR00483 Bacterial acid phosphatase class A signature 122 140 5.2E-49 T 13-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 PRINTS PR00483 Bacterial acid phosphatase class A signature 180 204 5.2E-49 T 13-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 PRINTS PR00483 Bacterial acid phosphatase class A signature 148 174 5.2E-49 T 13-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 PRINTS PR00483 Bacterial acid phosphatase class A signature 57 76 5.2E-49 T 13-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 PIRSF PIRSF000897 5 250 1.3E-93 T 13-10-2018 IPR001011 Acid phosphatase, class A, bacterial GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 ProSitePatterns PS01157 Class A bacterial acid phosphatases signature. 152 159 - T 13-10-2018 IPR018296 Acid phosphatase, class A, bacterial, conserved site GO:0003993|GO:0030288 KEGG: 00730+3.1.3.2|KEGG: 00740+3.1.3.2|MetaCyc: PWY-6348 CS348_22020 67750bbe4cecb4e13efa2b201bf03957 250 Pfam PF01569 PAP2 superfamily 117 213 2.6E-14 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_10715 3c76117b887ab81ae44b55d78d53a8f0 231 Pfam PF00814 Glycoprotease family 28 149 2.4E-30 T 13-10-2018 IPR000905 Gcp-like domain CS348_10715 3c76117b887ab81ae44b55d78d53a8f0 231 SUPERFAMILY SSF53067 3 105 8.63E-32 T 13-10-2018 CS348_10715 3c76117b887ab81ae44b55d78d53a8f0 231 SUPERFAMILY SSF53067 108 217 3.37E-30 T 13-10-2018 CS348_10715 3c76117b887ab81ae44b55d78d53a8f0 231 Gene3D G3DSA:3.30.420.40 3 222 1.2E-89 T 13-10-2018 CS348_10715 3c76117b887ab81ae44b55d78d53a8f0 231 Gene3D G3DSA:3.30.420.40 94 188 1.2E-89 T 13-10-2018 CS348_10715 3c76117b887ab81ae44b55d78d53a8f0 231 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 219 2.0E-71 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 356 3.6E-173 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 70 94 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 214 231 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 232 250 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 256 282 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 47 69 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 116 139 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 188 211 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 159 183 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 284 297 1.1E-118 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 16 43 7.5E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 Gene3D G3DSA:4.10.480.10 229 339 4.8E-47 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 62 207 3.3E-29 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 SUPERFAMILY SSF56770 46 309 1.03E-89 T 13-10-2018 CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 227 307 7.2E-32 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 Gene3D G3DSA:3.40.50.700 46 226 1.3E-71 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily CS348_12340 4d9e560bd31fd1ee9b7a396c67870ce2 367 PIRSF PIRSF000310 5 358 7.7E-143 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 CS348_07910 1378f017bd6f9470963f44b58f6ac33b 184 PIRSF PIRSF017340 2 172 3.6E-72 T 13-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 CS348_07910 1378f017bd6f9470963f44b58f6ac33b 184 SUPERFAMILY SSF55811 10 166 2.17E-36 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_07910 1378f017bd6f9470963f44b58f6ac33b 184 Pfam PF00293 NUDIX domain 37 155 6.9E-18 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_07910 1378f017bd6f9470963f44b58f6ac33b 184 Gene3D G3DSA:3.90.79.10 2 181 9.2E-59 T 13-10-2018 CS348_00600 f687830fbdc1ac2d022c8e21f3bf56c3 356 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 77 326 3.5E-71 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 CS348_00600 f687830fbdc1ac2d022c8e21f3bf56c3 356 SUPERFAMILY SSF53756 6 344 1.15E-81 T 13-10-2018 CS348_00600 f687830fbdc1ac2d022c8e21f3bf56c3 356 Gene3D G3DSA:3.40.50.2000 1 161 2.8E-35 T 13-10-2018 CS348_00600 f687830fbdc1ac2d022c8e21f3bf56c3 356 Gene3D G3DSA:3.40.50.2000 167 346 8.2E-42 T 13-10-2018 CS348_00600 f687830fbdc1ac2d022c8e21f3bf56c3 356 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 7 344 7.6E-150 T 13-10-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative CS348_24405 696df09e1abce862320feb7b1ff20999 498 Pfam PF12592 Protein of unknown function (DUF3763) 443 497 5.8E-21 T 13-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 CS348_24405 696df09e1abce862320feb7b1ff20999 498 Gene3D G3DSA:2.40.128.430 331 441 9.4E-106 T 13-10-2018 CS348_24405 696df09e1abce862320feb7b1ff20999 498 Gene3D G3DSA:1.20.58.1510 286 494 9.4E-106 T 13-10-2018 CS348_24405 696df09e1abce862320feb7b1ff20999 498 Gene3D G3DSA:1.10.8.300 222 285 1.7E-27 T 13-10-2018 CS348_24405 696df09e1abce862320feb7b1ff20999 498 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 3.7E-25 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 CS348_24405 696df09e1abce862320feb7b1ff20999 498 Hamap MF_01625 ATPase RavA [ravA]. 1 498 57.223 T 13-10-2018 IPR023671 ATPase RavA GO:0005737|GO:0016887 CS348_24405 696df09e1abce862320feb7b1ff20999 498 SUPERFAMILY SSF52540 22 286 1.56E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24405 696df09e1abce862320feb7b1ff20999 498 Gene3D G3DSA:3.40.50.300 1 221 5.6E-64 T 13-10-2018 CS348_24405 696df09e1abce862320feb7b1ff20999 498 SMART SM00382 38 187 3.5E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 21 36 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 36 51 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 251 263 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 121 139 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 82 101 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 56 71 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 104 121 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 161 179 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 PRINTS PR01010 Flagellar P-ring protein signature 187 205 9.1E-94 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 Pfam PF02119 Flagellar P-ring protein 21 364 1.3E-138 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_14540 be96d4994a1947db2baf34d695deced7 365 Hamap MF_00416 Flagellar P-ring protein [flgI]. 1 365 39.739 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Pfam PF01568 Molydopterin dinucleotide binding domain 637 746 8.7E-21 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Gene3D G3DSA:2.40.40.20 623 758 9.2E-33 T 13-10-2018 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 43 94 1.1E-12 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 30 1.8E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Gene3D G3DSA:2.20.25.90 36 98 1.1E-14 T 13-10-2018 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Gene3D G3DSA:3.40.228.10 181 368 2.8E-127 T 13-10-2018 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 SUPERFAMILY SSF53706 44 617 1.57E-142 T 13-10-2018 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 674 701 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Gene3D G3DSA:3.40.50.740 99 557 2.8E-127 T 13-10-2018 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 Pfam PF00384 Molybdopterin oxidoreductase 98 524 1.2E-100 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 46 64 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 467 484 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 SUPERFAMILY SSF50692 599 747 6.33E-30 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_09340 cb16f9a5a54cf67dfbea630de74977d8 758 SMART SM00926 41 95 2.2E-9 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 34 64 2.3E-11 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 SUPERFAMILY SSF57716 34 71 4.99E-9 T 13-10-2018 CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 Gene3D G3DSA:1.20.120.910 3 70 2.3E-18 T 13-10-2018 CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 PRINTS PR00618 DksA/TraR zinc finger signature 35 46 4.1E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 PRINTS PR00618 DksA/TraR zinc finger signature 47 59 4.1E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 64 1.3E-22 T 13-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type CS348_23450 602ca04b7579d8d4de3042ca117d37b7 74 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 35 59 - T 13-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CS348_24255 238b43898f7af34eb4520703a92b75fc 93 Pfam PF13616 PPIC-type PPIASE domain 15 91 8.1E-21 T 13-10-2018 CS348_24255 238b43898f7af34eb4520703a92b75fc 93 SUPERFAMILY SSF54534 6 92 9.81E-28 T 13-10-2018 CS348_24255 238b43898f7af34eb4520703a92b75fc 93 Gene3D G3DSA:3.10.50.40 2 93 1.1E-36 T 13-10-2018 CS348_24255 238b43898f7af34eb4520703a92b75fc 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 31 51 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 CS348_08175 8a99df84971d188347e4e44ce440a814 215 SUPERFAMILY SSF56925 91 212 2.12E-9 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_08175 8a99df84971d188347e4e44ce440a814 215 Pfam PF07437 YfaZ precursor 36 215 4.8E-82 T 13-10-2018 IPR009998 YfaZ CS348_08175 8a99df84971d188347e4e44ce440a814 215 Gene3D G3DSA:2.40.160.10 41 212 3.7E-5 T 13-10-2018 IPR023614 Porin domain superfamily CS348_24515 be9364bddc88ae14d1220b783475859e 219 SMART SM01059 6 209 1.2E-119 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CS348_24515 be9364bddc88ae14d1220b783475859e 219 ProSitePatterns PS00100 Chloramphenicol acetyltransferase active site. 190 200 - T 13-10-2018 IPR018372 Chloramphenicol acetyltransferase, active site GO:0008811 CS348_24515 be9364bddc88ae14d1220b783475859e 219 ProDom PD002660 TRANSFERASE CHLORAMPHENICOL ACYLTRANSFERASE ACETYLTRANSFERASE ANTIBIOTIC RESISTANCE PLASMID CAT O-ACETYLTRANSFERASE DIRECT 13 208 3.0E-115 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CS348_24515 be9364bddc88ae14d1220b783475859e 219 Gene3D G3DSA:3.30.559.10 1 219 4.6E-76 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CS348_24515 be9364bddc88ae14d1220b783475859e 219 Pfam PF00302 Chloramphenicol acetyltransferase 8 209 2.9E-100 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CS348_24515 be9364bddc88ae14d1220b783475859e 219 PIRSF PIRSF000440 5 217 1.2E-87 T 13-10-2018 IPR001707 Chloramphenicol acetyltransferase GO:0008811 CS348_24515 be9364bddc88ae14d1220b783475859e 219 SUPERFAMILY SSF52777 7 215 5.08E-79 T 13-10-2018 CS348_15045 0dba24576b7d17fb80d7bf0074a5beb5 113 PIRSF PIRSF034754 1 113 2.4E-56 T 13-10-2018 IPR013095 Type III secretion system chaperone CS348_15045 0dba24576b7d17fb80d7bf0074a5beb5 113 SUPERFAMILY SSF69635 1 113 7.85E-53 T 13-10-2018 CS348_15045 0dba24576b7d17fb80d7bf0074a5beb5 113 Gene3D G3DSA:3.30.1460.10 1 113 6.8E-54 T 13-10-2018 CS348_15045 0dba24576b7d17fb80d7bf0074a5beb5 113 Pfam PF07824 Type III secretion chaperone domain 3 113 5.8E-53 T 13-10-2018 IPR013095 Type III secretion system chaperone CS348_15045 0dba24576b7d17fb80d7bf0074a5beb5 113 ProDom PD030752 CHAPERONE VIRULENCE SIGE IPGE PLASMID PROTEIN: SHIGELLA 3D-STRUCTURE SEQUENCING DIRECT 1 113 3.0E-61 T 13-10-2018 IPR013095 Type III secretion system chaperone CS348_08640 cba4d312d51d2522eb80f73a0cc9eff5 440 PIRSF PIRSF002808 9 439 5.5E-104 T 13-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 CS348_08640 cba4d312d51d2522eb80f73a0cc9eff5 440 Gene3D G3DSA:1.20.1250.20 21 226 2.8E-49 T 13-10-2018 CS348_08640 cba4d312d51d2522eb80f73a0cc9eff5 440 Pfam PF07690 Major Facilitator Superfamily 37 400 1.5E-41 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_08640 cba4d312d51d2522eb80f73a0cc9eff5 440 Gene3D G3DSA:1.20.1250.20 242 438 2.2E-34 T 13-10-2018 CS348_08640 cba4d312d51d2522eb80f73a0cc9eff5 440 SUPERFAMILY SSF103473 19 436 1.96E-67 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 SUPERFAMILY SSF50129 1 169 5.48E-47 T 13-10-2018 IPR011032 GroES-like superfamily CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 Pfam PF00107 Zinc-binding dehydrogenase 172 298 4.3E-28 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 Gene3D G3DSA:3.40.50.720 146 283 5.0E-126 T 13-10-2018 CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 3.7E-29 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 SUPERFAMILY SSF51735 134 302 3.4E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 Gene3D G3DSA:3.90.180.10 25 331 5.0E-126 T 13-10-2018 CS348_12165 cf02cce98fef2673cbd19e3a90942408 336 SMART SM00829 7 332 3.1E-7 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_03850 f3f72d9a1b9ec85ff283c8e69d37b9b0 571 Gene3D G3DSA:3.30.450.90 60 196 3.9E-8 T 13-10-2018 CS348_03850 f3f72d9a1b9ec85ff283c8e69d37b9b0 571 Pfam PF00437 Type II/IV secretion system protein 100 375 4.8E-41 T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_03850 f3f72d9a1b9ec85ff283c8e69d37b9b0 571 Gene3D G3DSA:3.40.50.300 202 504 2.4E-68 T 13-10-2018 CS348_03850 f3f72d9a1b9ec85ff283c8e69d37b9b0 571 SUPERFAMILY SSF52540 94 503 1.11E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_13735 6632513e299210ce8751a79cd9613f5d 451 Pfam PF02056 Family 4 glycosyl hydrolase 6 187 1.7E-76 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 172 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 SUPERFAMILY SSF56327 173 443 5.07E-78 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 SUPERFAMILY SSF51735 4 167 1.48E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_13735 6632513e299210ce8751a79cd9613f5d 451 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 199 415 7.8E-36 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 194 206 2.9E-51 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 Gene3D G3DSA:3.40.50.720 1 170 5.6E-69 T 13-10-2018 CS348_13735 6632513e299210ce8751a79cd9613f5d 451 Gene3D G3DSA:3.90.110.10 171 448 2.3E-82 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CS348_03855 1cd8375392b7e09149baee38e2c2233b 360 Gene3D G3DSA:1.20.81.30 11 133 5.4E-17 T 13-10-2018 CS348_03855 1cd8375392b7e09149baee38e2c2233b 360 Gene3D G3DSA:1.20.81.30 222 317 8.9E-7 T 13-10-2018 CS348_03855 1cd8375392b7e09149baee38e2c2233b 360 Pfam PF00482 Type II secretion system (T2SS), protein F 229 348 1.5E-9 T 13-10-2018 IPR018076 Type II secretion system F domain CS348_03855 1cd8375392b7e09149baee38e2c2233b 360 Pfam PF00482 Type II secretion system (T2SS), protein F 24 146 2.2E-9 T 13-10-2018 IPR018076 Type II secretion system F domain CS348_16650 ba58adcb3369028f95c86d1ee3afa099 115 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 105 1.1E-7 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16650 ba58adcb3369028f95c86d1ee3afa099 115 SUPERFAMILY SSF81343 5 115 7.63E-31 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16650 ba58adcb3369028f95c86d1ee3afa099 115 PIRSF PIRSF000169 1 115 1.8E-42 T 13-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 CS348_16650 ba58adcb3369028f95c86d1ee3afa099 115 Gene3D G3DSA:1.20.1300.10 1 115 3.1E-32 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16650 ba58adcb3369028f95c86d1ee3afa099 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 2.6E-37 T 13-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 CS348_14910 5832ca74a8b4a801c41d6a1fc31bd70d 628 Pfam PF11412 Disulphide bond corrector protein DsbC 44 144 4.1E-16 T 13-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CS348_14910 5832ca74a8b4a801c41d6a1fc31bd70d 628 SUPERFAMILY SSF52833 504 622 2.42E-13 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_14910 5832ca74a8b4a801c41d6a1fc31bd70d 628 Pfam PF13899 Thioredoxin-like 513 599 5.5E-15 T 13-10-2018 CS348_14910 5832ca74a8b4a801c41d6a1fc31bd70d 628 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 285 489 3.1E-7 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CS348_14910 5832ca74a8b4a801c41d6a1fc31bd70d 628 Gene3D G3DSA:3.40.30.10 502 593 3.4E-13 T 13-10-2018 CS348_01585 7bf9ef1381d13effca0050fa419be978 276 Gene3D G3DSA:3.30.70.2350 1 67 2.9E-32 T 13-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily CS348_01585 7bf9ef1381d13effca0050fa419be978 276 Gene3D G3DSA:1.20.1540.10 91 271 5.4E-70 T 13-10-2018 IPR035952 Rhomboid-like superfamily CS348_01585 7bf9ef1381d13effca0050fa419be978 276 SUPERFAMILY SSF144091 92 267 2.88E-45 T 13-10-2018 CS348_01585 7bf9ef1381d13effca0050fa419be978 276 Pfam PF01694 Rhomboid family 131 267 6.4E-30 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CS348_01585 7bf9ef1381d13effca0050fa419be978 276 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 82 3.5E-28 T 13-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 CS348_01585 7bf9ef1381d13effca0050fa419be978 276 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 269 5.9E-116 T 13-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 CS348_01585 7bf9ef1381d13effca0050fa419be978 276 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 274 45.319 T 13-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 CS348_12740 78b32d7b1d6c6762ac0936fb238a0091 390 Gene3D G3DSA:3.90.1150.10 32 379 4.1E-128 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_12740 78b32d7b1d6c6762ac0936fb238a0091 390 Gene3D G3DSA:3.40.640.10 42 284 4.1E-128 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_12740 78b32d7b1d6c6762ac0936fb238a0091 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 386 1.1E-112 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 CS348_12740 78b32d7b1d6c6762ac0936fb238a0091 390 Pfam PF00155 Aminotransferase class I and II 30 379 7.9E-51 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_12740 78b32d7b1d6c6762ac0936fb238a0091 390 SUPERFAMILY SSF53383 1 387 2.45E-83 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_09595 c150f0eabe65569f6e48b6c99e733358 51 Gene3D G3DSA:3.30.160.390 1 46 1.6E-9 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CS348_05720 dd03b843bde5a0638a5f79205789e2d6 273 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_05720 dd03b843bde5a0638a5f79205789e2d6 273 Gene3D G3DSA:3.40.50.300 3 247 6.2E-61 T 13-10-2018 CS348_05720 dd03b843bde5a0638a5f79205789e2d6 273 Pfam PF00005 ABC transporter 22 169 1.5E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_05720 dd03b843bde5a0638a5f79205789e2d6 273 SUPERFAMILY SSF52540 4 231 2.36E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05720 dd03b843bde5a0638a5f79205789e2d6 273 SMART SM00382 31 217 2.4E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_25730 2a79fc7c83a34d7a84e00a99b85eecfd 362 Pfam PF13439 Glycosyltransferase Family 4 12 157 3.2E-11 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CS348_25730 2a79fc7c83a34d7a84e00a99b85eecfd 362 Gene3D G3DSA:3.40.50.2000 1 169 1.9E-14 T 13-10-2018 CS348_25730 2a79fc7c83a34d7a84e00a99b85eecfd 362 SUPERFAMILY SSF53756 3 358 2.43E-65 T 13-10-2018 CS348_25730 2a79fc7c83a34d7a84e00a99b85eecfd 362 Gene3D G3DSA:3.40.50.2000 175 346 3.2E-39 T 13-10-2018 CS348_25730 2a79fc7c83a34d7a84e00a99b85eecfd 362 Pfam PF00534 Glycosyl transferases group 1 183 329 3.6E-30 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_14015 8c1486d8ec32938c5181580ab016c914 181 Pfam PF01817 Chorismate mutase type II 31 99 1.2E-13 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_14015 8c1486d8ec32938c5181580ab016c914 181 SUPERFAMILY SSF48600 30 177 2.25E-38 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_14015 8c1486d8ec32938c5181580ab016c914 181 Gene3D G3DSA:1.20.140.170 27 179 3.0E-45 T 13-10-2018 CS348_14015 8c1486d8ec32938c5181580ab016c914 181 SMART SM00830 20 101 2.3E-16 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_14015 8c1486d8ec32938c5181580ab016c914 181 PIRSF PIRSF026640 1 181 4.8E-67 T 13-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_14015 8c1486d8ec32938c5181580ab016c914 181 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 24 134 2.0E-35 T 13-10-2018 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CS348_20550 3d15760fd1f8689f61666afca76e4f4c 389 Pfam PF05954 Phage late control gene D protein (GPD) 127 341 5.4E-12 T 13-10-2018 CS348_20550 3d15760fd1f8689f61666afca76e4f4c 389 SUPERFAMILY SSF69279 29 196 3.4E-23 T 13-10-2018 CS348_24965 1817b872dc5d14c428e2f0e1198eeb9f 179 SUPERFAMILY SSF56024 26 174 7.85E-36 T 13-10-2018 CS348_24965 1817b872dc5d14c428e2f0e1198eeb9f 179 Pfam PF13091 PLD-like domain 41 169 6.4E-27 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_24965 1817b872dc5d14c428e2f0e1198eeb9f 179 Gene3D G3DSA:3.30.870.10 22 179 5.8E-44 T 13-10-2018 CS348_19410 5fcfda2fe55fbfc3755d7823a70f2105 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 3 264 2.3E-125 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CS348_19410 5fcfda2fe55fbfc3755d7823a70f2105 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 5 263 41.696 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CS348_19410 5fcfda2fe55fbfc3755d7823a70f2105 264 Gene3D G3DSA:3.20.20.60 3 264 8.2E-104 T 13-10-2018 CS348_19410 5fcfda2fe55fbfc3755d7823a70f2105 264 PIRSF PIRSF000388 1 264 1.6E-96 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CS348_19410 5fcfda2fe55fbfc3755d7823a70f2105 264 SUPERFAMILY SSF51621 5 263 3.66E-103 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_19410 5fcfda2fe55fbfc3755d7823a70f2105 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 5 258 3.0E-103 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 PIRSF PIRSF000076 1 550 4.9E-240 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 21.465 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 SUPERFAMILY SSF56821 1 548 7.85E-190 T 13-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 1.1E-231 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 Gene3D G3DSA:3.40.50.2030 234 379 1.4E-60 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 Pfam PF03063 Prismane/CO dehydrogenase family 1 545 4.6E-156 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 Gene3D G3DSA:1.20.1270.20 1 137 1.0E-37 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 Gene3D G3DSA:1.20.1270.20 150 232 1.6E-29 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CS348_15525 2bbdda0ef156079e6bfc5ea7c177fba0 550 Gene3D G3DSA:3.40.50.2030 380 548 3.5E-58 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 CS348_12115 9a8149b6c71292b59f61634252ed0a82 192 Gene3D G3DSA:1.10.357.10 6 191 4.8E-30 T 13-10-2018 CS348_12115 9a8149b6c71292b59f61634252ed0a82 192 SUPERFAMILY SSF46689 4 69 5.13E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_12115 9a8149b6c71292b59f61634252ed0a82 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 51 2.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_12115 9a8149b6c71292b59f61634252ed0a82 192 SUPERFAMILY SSF48498 81 188 1.63E-17 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 Gene3D G3DSA:3.40.50.300 193 370 4.5E-56 T 13-10-2018 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 SUPERFAMILY SSF55785 82 174 3.62E-7 T 13-10-2018 IPR035965 PAS domain superfamily CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 412 421 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 285 300 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 SMART SM00091 80 146 2.9E-6 T 13-10-2018 IPR000014 PAS domain CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 Pfam PF00158 Sigma-54 interaction domain 206 365 1.5E-55 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 SMART SM00382 226 363 9.5E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 460 507 2.3E-28 T 13-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 Gene3D G3DSA:3.30.70.260 1 81 6.6E-28 T 13-10-2018 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 Gene3D G3DSA:1.10.10.60 449 508 3.7E-27 T 13-10-2018 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 SUPERFAMILY SSF46689 454 507 7.17E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 SUPERFAMILY SSF52540 206 440 1.43E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 SUPERFAMILY SSF55021 2 69 3.59E-5 T 13-10-2018 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 Gene3D G3DSA:1.10.8.60 372 448 2.8E-17 T 13-10-2018 CS348_11525 fa87e91654955296e3c6ae59e3e4a7d2 513 Gene3D G3DSA:3.30.450.20 82 190 5.6E-29 T 13-10-2018 CS348_07700 ba9ce082587c494c646d8ffa61327733 161 Gene3D G3DSA:3.40.50.1240 1 161 1.9E-40 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_07700 ba9ce082587c494c646d8ffa61327733 161 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 152 7.0E-59 T 13-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 CS348_07700 ba9ce082587c494c646d8ffa61327733 161 SUPERFAMILY SSF53254 1 140 1.13E-18 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_07700 ba9ce082587c494c646d8ffa61327733 161 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 74 2.6E-7 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_24840 7ac399fc48dbb6f1101f74d64713d036 52 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 3 50 8.0E-19 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_24840 7ac399fc48dbb6f1101f74d64713d036 52 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 12 31 - T 13-10-2018 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 CS348_24840 7ac399fc48dbb6f1101f74d64713d036 52 PRINTS PR00281 Hok/Gef cell toxic protein family signature 27 49 3.2E-17 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_24840 7ac399fc48dbb6f1101f74d64713d036 52 PRINTS PR00281 Hok/Gef cell toxic protein family signature 7 25 3.2E-17 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_24840 7ac399fc48dbb6f1101f74d64713d036 52 Pfam PF01848 Hok/gef family 8 48 1.4E-18 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_17370 3a1d5da7ee703a306051e3a97752516a 464 Gene3D G3DSA:1.20.1740.10 23 464 1.6E-61 T 13-10-2018 CS348_17370 3a1d5da7ee703a306051e3a97752516a 464 PIRSF PIRSF006060 5 463 1.1E-76 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_17370 3a1d5da7ee703a306051e3a97752516a 464 Pfam PF00324 Amino acid permease 31 457 2.0E-117 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_17370 3a1d5da7ee703a306051e3a97752516a 464 ProSitePatterns PS00218 Amino acid permeases signature. 56 86 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_21455 2cf9f1fcb867b2b765315f5050483248 388 Gene3D G3DSA:1.20.1250.20 6 384 5.1E-36 T 13-10-2018 CS348_21455 2cf9f1fcb867b2b765315f5050483248 388 SUPERFAMILY SSF103473 12 387 1.16E-47 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_21455 2cf9f1fcb867b2b765315f5050483248 388 Pfam PF07690 Major Facilitator Superfamily 18 205 9.2E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_21455 2cf9f1fcb867b2b765315f5050483248 388 Pfam PF07690 Major Facilitator Superfamily 221 385 4.2E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_21455 2cf9f1fcb867b2b765315f5050483248 388 Hamap MF_02091 Uncharacterized MFS-type transporter YfcJ [yfcJ]. 13 388 36.814 T 13-10-2018 IPR037541 Uncharacterized MFS-type transporter YfcJ CS348_12760 93478e5787697ebc71a1c6a7154a3466 71 SUPERFAMILY SSF68989 1 71 1.18E-22 T 13-10-2018 IPR036666 HHA superfamily CS348_12760 93478e5787697ebc71a1c6a7154a3466 71 Pfam PF05321 Haemolysin expression modulating protein 8 68 8.9E-28 T 13-10-2018 IPR007985 Haemolysin expression modulating, HHA CS348_12760 93478e5787697ebc71a1c6a7154a3466 71 Gene3D G3DSA:1.20.1280.40 1 71 6.0E-34 T 13-10-2018 IPR036666 HHA superfamily CS348_01605 67236c4d4fa6e625c3e037a68e417dd8 692 Pfam PF02446 4-alpha-glucanotransferase 146 662 1.3E-130 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 CS348_01605 67236c4d4fa6e625c3e037a68e417dd8 692 SUPERFAMILY SSF51445 140 679 3.16E-146 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_01605 67236c4d4fa6e625c3e037a68e417dd8 692 Gene3D G3DSA:3.20.20.80 139 681 1.6E-122 T 13-10-2018 CS348_01605 67236c4d4fa6e625c3e037a68e417dd8 692 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 98 683 3.1E-278 T 13-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Gene3D G3DSA:3.40.50.620 356 577 5.8E-57 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 SUPERFAMILY SSF52374 1 641 3.47E-136 T 13-10-2018 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 1.6E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 1.6E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 1.6E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 1.6E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 1.6E-35 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 949 16.182 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Gene3D G3DSA:3.90.740.10 202 355 2.1E-34 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 SUPERFAMILY SSF47323 642 899 8.04E-70 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Pfam PF08264 Anticodon-binding domain of tRNA 674 824 5.3E-42 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Gene3D G3DSA:1.10.287.380 877 948 8.1E-18 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 SUPERFAMILY SSF46589 884 947 2.14E-16 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 886 944 3.3E-17 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Gene3D G3DSA:3.40.50.620 2 201 1.6E-65 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 SUPERFAMILY SSF50677 191 365 9.55E-57 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 931 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 8.3E-232 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_21225 d3abb10f93ebc93db7cc63bb86baf7b2 951 Gene3D G3DSA:1.10.730.10 578 817 5.3E-72 T 13-10-2018 CS348_00605 1531066560d6a713f4bff297490ebf70 374 Gene3D G3DSA:3.40.50.2000 12 169 5.6E-127 T 13-10-2018 CS348_00605 1531066560d6a713f4bff297490ebf70 374 Pfam PF13439 Glycosyltransferase Family 4 13 173 1.3E-9 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CS348_00605 1531066560d6a713f4bff297490ebf70 374 Pfam PF00534 Glycosyl transferases group 1 184 349 1.9E-35 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_00605 1531066560d6a713f4bff297490ebf70 374 Gene3D G3DSA:3.40.50.2000 170 334 5.6E-127 T 13-10-2018 CS348_00605 1531066560d6a713f4bff297490ebf70 374 SUPERFAMILY SSF53756 2 354 2.8E-65 T 13-10-2018 CS348_06815 db5e2971a0e1813102f3d2af427d73e1 292 Gene3D G3DSA:3.40.50.1820 37 290 5.3E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_06815 db5e2971a0e1813102f3d2af427d73e1 292 SUPERFAMILY SSF53474 21 289 2.13E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_06815 db5e2971a0e1813102f3d2af427d73e1 292 Pfam PF12146 Serine aminopeptidase, S33 77 193 1.7E-11 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 Pfam PF17189 Glycosyl hydrolase family 30 beta sandwich domain 382 439 5.7E-7 T 13-10-2018 IPR033452 Glycosyl hydrolase family 30, beta sandwich domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 ProSitePatterns PS00018 EF-hand calcium-binding domain. 239 251 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 Gene3D G3DSA:2.60.40.1180 19 442 1.1E-177 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 SUPERFAMILY SSF51445 45 381 6.32E-73 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 Gene3D G3DSA:3.20.20.80 43 381 1.1E-177 T 13-10-2018 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 Pfam PF02055 Glycosyl hydrolase family 30 TIM-barrel domain 45 377 7.4E-57 T 13-10-2018 IPR033453 Glycosyl hydrolase family 30, TIM-barrel domain Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 PRINTS PR00843 Glycosyl hydrolase family 30 signature 70 96 2.6E-13 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 PRINTS PR00843 Glycosyl hydrolase family 30 signature 98 126 2.6E-13 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 PRINTS PR00843 Glycosyl hydrolase family 30 signature 35 55 2.6E-13 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CS348_21465 6e02f51e61c1be89e41381ed32643de5 447 PRINTS PR00843 Glycosyl hydrolase family 30 signature 233 255 2.6E-13 T 13-10-2018 IPR001139 Glycoside hydrolase family 30 GO:0004348|GO:0006665 Reactome: R-HSA-1660662|Reactome: R-HSA-390471 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 SUPERFAMILY SSF50615 10 94 2.55E-25 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.8E-45 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 1.2E-12 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.4E-73 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Gene3D G3DSA:2.40.30.20 1 93 1.9E-29 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Gene3D G3DSA:3.40.50.300 94 382 3.7E-132 T 13-10-2018 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 SUPERFAMILY SSF47917 383 511 1.18E-45 T 13-10-2018 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Gene3D G3DSA:1.20.150.20 383 513 5.1E-51 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 3.8E-262 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 49.982 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24465 464c87f6338a6c2f89661bf6ab2b6ef6 513 SUPERFAMILY SSF52540 96 381 2.66E-94 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09085 19a6fd948219e0b298b2fe58be1ca65e 280 Pfam PF00535 Glycosyl transferase family 2 9 160 1.9E-27 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_09085 19a6fd948219e0b298b2fe58be1ca65e 280 TIGRFAM TIGR04017 WcaA: colanic acid biosynthesis glycosyltransferase WcaA 2 280 2.6E-194 T 13-10-2018 IPR024009 Colanic acid biosynthesis, glycosyl transferase, WcaA CS348_09085 19a6fd948219e0b298b2fe58be1ca65e 280 Gene3D G3DSA:3.90.550.10 1 260 5.1E-46 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09085 19a6fd948219e0b298b2fe58be1ca65e 280 SUPERFAMILY SSF53448 6 234 6.09E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 Gene3D G3DSA:3.90.228.20 234 524 8.6E-239 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 SUPERFAMILY SSF53795 228 539 2.62E-131 T 13-10-2018 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 490 1.0E-211 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 56.105 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 PIRSF PIRSF006294 2 539 1.2E-233 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 Gene3D G3DSA:3.40.449.10 22 233 8.6E-239 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 5 539 5.0E-293 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 13-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 Gene3D G3DSA:2.170.8.10 46 349 8.6E-239 T 13-10-2018 CS348_01675 ca522872fb9d5016d2169a25aa49c804 539 SUPERFAMILY SSF68923 8 226 3.49E-91 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 SUPERFAMILY SSF52821 115 270 4.19E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 SMART SM00450 136 237 3.6E-24 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 Gene3D G3DSA:3.40.250.10 124 270 8.2E-43 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 38.934 T 13-10-2018 IPR020936 Uncharacterised protein family UPF0176 CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 Pfam PF00581 Rhodanese-like domain 138 232 7.7E-13 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 Gene3D G3DSA:3.30.70.100 12 118 1.8E-15 T 13-10-2018 CS348_14675 748f687a85ba3a054a2b10c51f559dbc 350 Pfam PF12368 Rhodanase C-terminal 246 307 9.8E-19 T 13-10-2018 IPR022111 Rhodanase, C-terminal CS348_12835 d0435e29a5c22f3abb2860b937b86ea4 373 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 367 5.1E-172 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 CS348_12835 d0435e29a5c22f3abb2860b937b86ea4 373 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 41.817 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 CS348_12835 d0435e29a5c22f3abb2860b937b86ea4 373 Gene3D G3DSA:3.30.420.40 11 362 5.5E-131 T 13-10-2018 CS348_12835 d0435e29a5c22f3abb2860b937b86ea4 373 Gene3D G3DSA:3.30.420.40 145 327 5.5E-131 T 13-10-2018 CS348_12835 d0435e29a5c22f3abb2860b937b86ea4 373 SUPERFAMILY SSF53067 6 341 3.63E-28 T 13-10-2018 CS348_10530 c834bfdde49f8dd3d937fdbb92e395d4 131 ProDom PD021249 YDFO YCGX ENVELOPE CYTOPLASMIC STY1988 CP-933X ECS1626 YBCV PROPHAGE 1 131 6.0E-72 T 13-10-2018 IPR009833 Uncharacterised protein DUF1398 CS348_10530 c834bfdde49f8dd3d937fdbb92e395d4 131 Pfam PF07166 Protein of unknown function (DUF1398) 8 126 1.0E-45 T 13-10-2018 IPR009833 Uncharacterised protein DUF1398 CS348_10530 c834bfdde49f8dd3d937fdbb92e395d4 131 SUPERFAMILY SSF160419 6 127 1.57E-42 T 13-10-2018 IPR036696 YdfO-like superfamily CS348_10530 c834bfdde49f8dd3d937fdbb92e395d4 131 Gene3D G3DSA:3.30.1810.10 1 128 9.7E-57 T 13-10-2018 IPR036696 YdfO-like superfamily CS348_20265 c0098509be2ad9845ff6536414904b4c 234 Pfam PF15977 Winged helix-turn-helix DNA binding 165 231 3.7E-27 T 13-10-2018 CS348_04100 547fe0ad83a6c9d5ed13ac402202d3b0 108 Pfam PF16518 T3SS negative regulator,GrlR 1 99 4.0E-19 T 13-10-2018 IPR032417 T3SS negative regulator GrlR CS348_04100 547fe0ad83a6c9d5ed13ac402202d3b0 108 Gene3D G3DSA:2.40.128.380 1 108 1.2E-39 T 13-10-2018 CS348_23390 c6a9d758c82bf65149c26173e7cb5f86 67 Gene3D G3DSA:3.10.350.10 1 67 4.7E-32 T 13-10-2018 IPR036779 LysM domain superfamily CS348_23390 c6a9d758c82bf65149c26173e7cb5f86 67 Pfam PF05489 Phage Tail Protein X 1 60 6.5E-29 T 13-10-2018 IPR008861 Phage Tail Protein X-like CS348_03460 7f799c432d2529e0247425718ff3698a 275 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 SUPERFAMILY SSF51430 6 268 2.88E-90 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_03460 7f799c432d2529e0247425718ff3698a 275 PRINTS PR00069 Aldo-keto reductase signature 123 140 3.0E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 PRINTS PR00069 Aldo-keto reductase signature 91 109 3.0E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 PRINTS PR00069 Aldo-keto reductase signature 157 186 3.0E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 PRINTS PR00069 Aldo-keto reductase signature 37 61 3.0E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 PRINTS PR00069 Aldo-keto reductase signature 196 220 3.0E-46 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 Gene3D G3DSA:3.20.20.100 1 275 2.2E-124 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_03460 7f799c432d2529e0247425718ff3698a 275 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 Pfam PF00248 Aldo/keto reductase family 18 260 1.5E-49 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_03460 7f799c432d2529e0247425718ff3698a 275 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 PIRSF PIRSF000097 110 270 5.1E-53 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_03460 7f799c432d2529e0247425718ff3698a 275 PIRSF PIRSF000097 1 114 1.4E-45 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 3.6E-221 T 13-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 SUPERFAMILY SSF56024 274 473 1.59E-47 T 13-10-2018 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 Gene3D G3DSA:3.30.870.10 112 301 8.8E-35 T 13-10-2018 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 51.541 T 13-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 SMART SM00155 219 246 1.4E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 SMART SM00155 399 426 8.2E-6 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 SUPERFAMILY SSF56024 66 315 3.77E-45 T 13-10-2018 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 Pfam PF13091 PLD-like domain 134 244 6.0E-11 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 Pfam PF13091 PLD-like domain 332 446 1.2E-22 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_11150 005720bf47ad24a83c28ca15077218f3 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 22 59 3.9E-6 T 13-10-2018 IPR027379 Cardiolipin synthase N-terminal CS348_11150 005720bf47ad24a83c28ca15077218f3 486 Gene3D G3DSA:3.30.870.10 302 483 2.0E-28 T 13-10-2018 CS348_18060 8039008edd39de00430b9a76759ed7b3 593 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_18060 8039008edd39de00430b9a76759ed7b3 593 Pfam PF00664 ABC transporter transmembrane region 28 297 2.8E-41 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_18060 8039008edd39de00430b9a76759ed7b3 593 Gene3D G3DSA:1.20.1560.10 3 328 6.0E-72 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_18060 8039008edd39de00430b9a76759ed7b3 593 Pfam PF00005 ABC transporter 357 505 3.9E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_18060 8039008edd39de00430b9a76759ed7b3 593 SMART SM00382 366 557 1.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_18060 8039008edd39de00430b9a76759ed7b3 593 SUPERFAMILY SSF52540 336 576 3.2E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18060 8039008edd39de00430b9a76759ed7b3 593 Gene3D G3DSA:3.40.50.300 333 585 1.0E-79 T 13-10-2018 CS348_18060 8039008edd39de00430b9a76759ed7b3 593 SUPERFAMILY SSF90123 12 325 1.44E-69 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 SUPERFAMILY SSF46589 13 99 1.31E-22 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.8E-27 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 5.6E-107 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 SUPERFAMILY SSF55681 92 327 1.82E-81 T 13-10-2018 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 Gene3D G3DSA:3.30.930.10 8 327 5.5E-125 T 13-10-2018 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.935 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 CS348_13635 3b8a87c67590726de5b7e0f8858d0ef7 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 1.7E-118 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.277 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 1.3E-271 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 Gene3D G3DSA:3.50.30.80 421 573 2.3E-55 T 13-10-2018 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 SUPERFAMILY SSF52016 421 610 1.41E-60 T 13-10-2018 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 SUPERFAMILY SSF143975 3 420 2.35E-133 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_24290 bd4e2adca7d07092522097b5bbce654f 616 Pfam PF00920 Dehydratase family 34 607 1.4E-218 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CS348_07795 c80b4836684464b1206861621293180c 270 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 10 252 35.926 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 Gene3D G3DSA:3.30.70.660 114 251 1.6E-52 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 Pfam PF01416 tRNA pseudouridine synthase 17 111 1.7E-8 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 Pfam PF01416 tRNA pseudouridine synthase 151 253 1.5E-28 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 SUPERFAMILY SSF55120 9 265 1.73E-93 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 10 247 2.0E-81 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 PIRSF PIRSF001430 9 261 4.4E-77 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_07795 c80b4836684464b1206861621293180c 270 Gene3D G3DSA:3.30.70.580 7 113 3.6E-42 T 13-10-2018 CS348_08880 447303982f6a7fd469a2050b376714f2 369 SUPERFAMILY SSF52540 108 355 2.44E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08880 447303982f6a7fd469a2050b376714f2 369 ProSitePatterns PS01215 Mrp family signature. 213 229 - T 13-10-2018 IPR000808 Mrp, conserved site GO:0005524 CS348_08880 447303982f6a7fd469a2050b376714f2 369 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 106 349 4.0E-101 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CS348_08880 447303982f6a7fd469a2050b376714f2 369 Gene3D G3DSA:3.40.50.300 94 348 8.7E-82 T 13-10-2018 CS348_08880 447303982f6a7fd469a2050b376714f2 369 Hamap MF_02040 Iron-sulfur cluster carrier protein. 101 350 37.741 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 SUPERFAMILY SSF50129 298 340 1.13E-5 T 13-10-2018 IPR011032 GroES-like superfamily CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 Gene3D G3DSA:3.90.180.10 19 339 1.1E-124 T 13-10-2018 CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 Gene3D G3DSA:3.40.50.720 130 311 1.1E-124 T 13-10-2018 CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 SUPERFAMILY SSF51735 127 306 2.39E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 SUPERFAMILY SSF50129 7 146 1.19E-42 T 13-10-2018 IPR011032 GroES-like superfamily CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 Pfam PF00107 Zinc-binding dehydrogenase 161 298 1.2E-16 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 SMART SM00829 19 339 7.1E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_12035 2eba4ead86460fcc751d0def88d03ab8 345 Pfam PF16884 N-terminal domain of oxidoreductase 9 115 1.1E-39 T 13-10-2018 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 349 360 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 339 421 2.5E-26 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 Gene3D G3DSA:3.10.20.600 239 333 5.1E-27 T 13-10-2018 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 13 423 3.7E-204 T 13-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 Gene3D G3DSA:3.40.50.11540 59 238 1.0E-78 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 54 226 4.0E-50 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 SUPERFAMILY SSF142984 248 330 1.44E-20 T 13-10-2018 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 Gene3D G3DSA:1.20.1440.230 334 433 3.5E-28 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 SMART SM00928 336 381 4.3E-22 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 SUPERFAMILY SSF142019 16 246 1.02E-85 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 Pfam PF10531 SLBB domain 253 295 1.5E-6 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 SUPERFAMILY SSF140490 334 429 1.01E-31 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08030 1e25fdad1b1031ff2ad80b31931975bb 445 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 174 189 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23630 be61545fd281cb85694cbbfea3c621d9 103 PIRSF PIRSF039032 1 103 4.4E-37 T 13-10-2018 IPR009387 Toxin HigB-2 CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 2 391 49.142 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 SUPERFAMILY SSF53686 5 390 7.86E-142 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 Gene3D G3DSA:3.40.50.1100 54 384 1.5E-182 T 13-10-2018 CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 80 94 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 52 375 3.1E-49 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 8 389 2.1E-188 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 Gene3D G3DSA:3.40.50.1100 10 205 1.5E-182 T 13-10-2018 CS348_11225 5d29e69c3e6b932f23b68b2607db59bd 397 PIRSF PIRSF001413 1 397 4.7E-173 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CS348_17330 7d244d03f39628e58803497db31dbd92 372 SUPERFAMILY SSF55931 5 369 2.49E-107 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CS348_17330 7d244d03f39628e58803497db31dbd92 372 Gene3D G3DSA:3.30.590.20 5 372 3.3E-105 T 13-10-2018 CS348_17330 7d244d03f39628e58803497db31dbd92 372 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 296 1.6E-111 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CS348_17330 7d244d03f39628e58803497db31dbd92 372 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 372 92.08 T 13-10-2018 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CS348_17330 7d244d03f39628e58803497db31dbd92 372 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 292 4.2E-83 T 13-10-2018 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 PRINTS PR00050 Cold shock protein signature 43 61 1.9E-17 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 PRINTS PR00050 Cold shock protein signature 28 37 1.9E-17 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 PRINTS PR00050 Cold shock protein signature 7 22 1.9E-17 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 13-10-2018 IPR019844 Cold-shock conserved site CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 PIRSF PIRSF002599 1 70 1.6E-25 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 SUPERFAMILY SSF50249 2 69 2.57E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 SMART SM00357 6 70 7.8E-30 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 Gene3D G3DSA:2.40.50.140 2 69 9.4E-31 T 13-10-2018 CS348_09760 874ef2d0b555d6d89bcf70b86ecc3f63 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 69 2.0E-32 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_03545 1ac5a579c8f38bdfbd38ad993f984108 328 Gene3D G3DSA:3.30.70.20 35 176 9.9E-49 T 13-10-2018 CS348_03545 1ac5a579c8f38bdfbd38ad993f984108 328 Gene3D G3DSA:3.30.70.20 36 226 9.9E-49 T 13-10-2018 CS348_03545 1ac5a579c8f38bdfbd38ad993f984108 328 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 1 26 1.1E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CS348_03545 1ac5a579c8f38bdfbd38ad993f984108 328 Pfam PF13247 4Fe-4S dicluster domain 106 207 8.2E-23 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_03545 1ac5a579c8f38bdfbd38ad993f984108 328 SUPERFAMILY SSF54862 38 325 5.86E-71 T 13-10-2018 CS348_03545 1ac5a579c8f38bdfbd38ad993f984108 328 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08105 baad6c09f0f2dbc68946a028b1ece167 252 SUPERFAMILY SSF53474 5 250 7.75E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_08105 baad6c09f0f2dbc68946a028b1ece167 252 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 15 250 1.1E-80 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 CS348_08105 baad6c09f0f2dbc68946a028b1ece167 252 Gene3D G3DSA:3.40.50.1820 1 252 9.6E-69 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_08105 baad6c09f0f2dbc68946a028b1ece167 252 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 4 251 34.414 T 13-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 CS348_08105 baad6c09f0f2dbc68946a028b1ece167 252 Pfam PF12697 Alpha/beta hydrolase family 17 244 3.7E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CS348_17265 d033c245875e522561500265dd2dfb50 536 Gene3D G3DSA:3.30.300.310 433 534 2.1E-26 T 13-10-2018 CS348_17265 d033c245875e522561500265dd2dfb50 536 ProSitePatterns PS00455 Putative AMP-binding domain signature. 187 198 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_17265 d033c245875e522561500265dd2dfb50 536 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 3 527 1.3E-266 T 13-10-2018 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 CS348_17265 d033c245875e522561500265dd2dfb50 536 Pfam PF13193 AMP-binding enzyme C-terminal domain 446 520 2.5E-11 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_17265 d033c245875e522561500265dd2dfb50 536 SUPERFAMILY SSF56801 15 532 7.2E-124 T 13-10-2018 CS348_17265 d033c245875e522561500265dd2dfb50 536 Pfam PF00501 AMP-binding enzyme 36 437 2.0E-73 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_17265 d033c245875e522561500265dd2dfb50 536 Gene3D G3DSA:3.40.50.12780 2 431 4.1E-156 T 13-10-2018 CS348_20535 09d34f93ce718a0ec2fd25862aef27cd 367 PIRSF PIRSF020481 1 366 1.4E-94 T 13-10-2018 IPR014507 Baseplate assembly protein J, predicted CS348_20535 09d34f93ce718a0ec2fd25862aef27cd 367 Pfam PF04865 Baseplate J-like protein 70 326 8.2E-72 T 13-10-2018 IPR006949 Baseplate protein J-like CS348_25720 654e850c6c87ebfc4dd13070a6a06d42 313 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 303 2.9E-97 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_25720 654e850c6c87ebfc4dd13070a6a06d42 313 PIRSF PIRSF026649 7 312 1.7E-94 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_25720 654e850c6c87ebfc4dd13070a6a06d42 313 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 2 308 50.662 T 13-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 CS348_25720 654e850c6c87ebfc4dd13070a6a06d42 313 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 8 312 8.8E-138 T 13-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 CS348_08160 3a49430ee09890be0ad0a735a5d4c348 385 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 7 385 69.106 T 13-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 CS348_08160 3a49430ee09890be0ad0a735a5d4c348 385 SUPERFAMILY SSF53383 10 382 2.69E-115 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_08160 3a49430ee09890be0ad0a735a5d4c348 385 Gene3D G3DSA:3.40.640.10 2 258 9.7E-95 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_08160 3a49430ee09890be0ad0a735a5d4c348 385 PIRSF PIRSF000390 6 385 4.7E-113 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CS348_08160 3a49430ee09890be0ad0a735a5d4c348 385 Gene3D G3DSA:3.90.1150.10 259 384 1.0E-40 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_08160 3a49430ee09890be0ad0a735a5d4c348 385 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 19 379 1.0E-131 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CS348_15130 f150d5da486bec19079a95f509ace09b 717 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 8 705 0.0 T 13-10-2018 IPR010020 Integral membrane protein, YccS/YhfK CS348_15130 f150d5da486bec19079a95f509ace09b 717 Pfam PF12805 FUSC-like inner membrane protein yccS 66 345 2.0E-112 T 13-10-2018 IPR032692 Integral membrane protein YccS, N-terminal CS348_15130 f150d5da486bec19079a95f509ace09b 717 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 8 706 0.0 T 13-10-2018 IPR010019 Integral membrane protein, YccS CS348_15130 f150d5da486bec19079a95f509ace09b 717 Pfam PF13515 Fusaric acid resistance protein-like 406 525 2.3E-24 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 PRINTS PR01100 Shikimate kinase family signature 59 67 3.8E-29 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 PRINTS PR01100 Shikimate kinase family signature 98 115 3.8E-29 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 PRINTS PR01100 Shikimate kinase family signature 7 22 3.8E-29 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 PRINTS PR01100 Shikimate kinase family signature 31 44 3.8E-29 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 PRINTS PR01100 Shikimate kinase family signature 77 86 3.8E-29 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 Gene3D G3DSA:3.40.50.300 1 173 4.4E-58 T 13-10-2018 CS348_01750 515457a15024ceff2fa6714788414c73 173 SUPERFAMILY SSF52540 4 170 1.25E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01750 515457a15024ceff2fa6714788414c73 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 13-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_01750 515457a15024ceff2fa6714788414c73 173 Pfam PF01202 Shikimate kinase 13 170 3.0E-56 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_01750 515457a15024ceff2fa6714788414c73 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.251 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 SUPERFAMILY SSF51338 1 53 5.18E-18 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 Gene3D G3DSA:3.20.20.140 55 344 9.1E-140 T 13-10-2018 CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 376 4.7E-176 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 SUPERFAMILY SSF51556 54 350 5.35E-101 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 PIRSF PIRSF038994 1 382 5.8E-113 T 13-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 Pfam PF01979 Amidohydrolase family 50 379 1.4E-49 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CS348_16845 a3c3b8ffe6275160a442babd31a6ef52 384 Gene3D G3DSA:2.30.40.10 7 376 9.1E-140 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_05480 aa2760ba32e62e47b47820986704de27 126 SUPERFAMILY SSF54427 2 124 2.38E-38 T 13-10-2018 IPR032710 NTF2-like domain superfamily CS348_05480 aa2760ba32e62e47b47820986704de27 126 PIRSF PIRSF029394 1 126 1.9E-54 T 13-10-2018 IPR016918 Uncharacterised conserved protein UCP029394 CS348_05480 aa2760ba32e62e47b47820986704de27 126 Pfam PF14534 Domain of unknown function (DUF4440) 23 113 5.1E-9 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 CS348_05480 aa2760ba32e62e47b47820986704de27 126 Gene3D G3DSA:3.10.450.50 1 125 1.5E-39 T 13-10-2018 CS348_24030 86addb9e34050c3f291bb3359bfbf1ba 295 Pfam PF00892 EamA-like transporter family 9 142 4.9E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_24030 86addb9e34050c3f291bb3359bfbf1ba 295 TIGRFAM TIGR00688 rarD: protein RarD 8 261 2.3E-111 T 13-10-2018 IPR004626 RarD protein GO:0005887 CS348_24030 86addb9e34050c3f291bb3359bfbf1ba 295 SUPERFAMILY SSF103481 204 285 4.71E-7 T 13-10-2018 CS348_24030 86addb9e34050c3f291bb3359bfbf1ba 295 SUPERFAMILY SSF103481 42 145 1.57E-14 T 13-10-2018 CS348_13585 8268cdc5c9620b414e03dce9646b5bce 986 Pfam PF10145 Phage-related minor tail protein 229 427 2.5E-46 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_13585 8268cdc5c9620b414e03dce9646b5bce 986 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 189 537 4.0E-83 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 SUPERFAMILY SSF50182 162 228 6.54E-17 T 13-10-2018 IPR010920 LSM domain superfamily CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 SUPERFAMILY SSF82861 79 160 1.24E-9 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 Gene3D G3DSA:2.30.30.60 178 228 2.8E-9 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 Pfam PF00924 Mechanosensitive ion channel 121 323 8.3E-62 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 Gene3D G3DSA:3.30.70.100 231 328 2.7E-19 T 13-10-2018 CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 194 228 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 CS348_11630 0b660b5b1b339ac9491f017d2d88491e 343 SUPERFAMILY SSF82689 231 335 1.57E-22 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Gene3D G3DSA:3.30.930.10 11 465 2.3E-242 T 13-10-2018 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 568 1.0E-278 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 43.136 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 SUPERFAMILY SSF52954 463 571 8.61E-34 T 13-10-2018 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Pfam PF03129 Anticodon binding domain 475 567 2.8E-21 T 13-10-2018 IPR004154 Anticodon-binding CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 SUPERFAMILY SSF55826 218 390 5.36E-32 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 SUPERFAMILY SSF55681 10 478 3.45E-108 T 13-10-2018 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 PIRSF PIRSF001535 1 572 1.1E-277 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.2E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.2E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.2E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.2E-19 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Gene3D G3DSA:3.90.960.10 240 389 2.3E-242 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 376 7.3E-27 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Gene3D G3DSA:3.40.50.800 4 554 2.3E-242 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CS348_19085 3571552d06e2bb58b9774a9225391cfc 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 2.1E-48 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 522 7.8E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 555 7.8E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 PRINTS PR00344 Bacterial sensor protein C-terminal signature 526 536 7.8E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Pfam PF00512 His Kinase A (phospho-acceptor) domain 358 418 1.5E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Gene3D G3DSA:3.40.190.10 116 234 2.3E-19 T 13-10-2018 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 SMART SM00387 473 581 7.8E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Gene3D G3DSA:1.10.287.130 362 423 3.1E-15 T 13-10-2018 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Gene3D G3DSA:3.30.565.10 434 579 5.0E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_13150 418053acf22c7ae43a4aab87761834c3 592 SMART SM00388 357 426 3.5E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Gene3D G3DSA:3.40.190.10 29 259 2.3E-19 T 13-10-2018 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 SUPERFAMILY SSF47384 347 420 2.55E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 477 578 4.5E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_13150 418053acf22c7ae43a4aab87761834c3 592 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 29 262 6.7E-36 T 13-10-2018 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 SUPERFAMILY SSF53850 44 270 4.92E-16 T 13-10-2018 CS348_13150 418053acf22c7ae43a4aab87761834c3 592 SUPERFAMILY SSF55874 434 577 3.27E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 33 432 1.1E-146 T 13-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 Pfam PF08946 Osmosensory transporter coiled coil 454 499 3.9E-22 T 13-10-2018 IPR015041 Osmosensory transporter coiled coil CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 SUPERFAMILY SSF103661 465 497 1.83E-12 T 13-10-2018 IPR036292 Proline/betaine transporter ProP, C-terminal CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 Pfam PF00083 Sugar (and other) transporter 28 448 6.3E-73 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 SUPERFAMILY SSF103473 24 441 2.09E-69 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 ProSitePatterns PS00216 Sugar transport proteins signature 1. 315 332 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_22225 a72720017191cf51602bc6a07f9acdcb 500 Gene3D G3DSA:1.20.1250.20 24 457 2.6E-73 T 13-10-2018 CS348_21880 597098c38802016ade187db8fa225b9e 322 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 51.009 T 13-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 CS348_21880 597098c38802016ade187db8fa225b9e 322 Pfam PF02666 Phosphatidylserine decarboxylase 63 266 5.9E-59 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CS348_21880 597098c38802016ade187db8fa225b9e 322 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 286 4.3E-99 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CS348_08660 e2a5be2cb5463d0a1145c4c183c5eba5 285 Gene3D G3DSA:3.40.50.1820 1 278 4.8E-91 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_08660 e2a5be2cb5463d0a1145c4c183c5eba5 285 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 276 3.1E-117 T 13-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 CS348_08660 e2a5be2cb5463d0a1145c4c183c5eba5 285 Pfam PF00756 Putative esterase 22 271 2.9E-72 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CS348_08660 e2a5be2cb5463d0a1145c4c183c5eba5 285 SUPERFAMILY SSF53474 1 277 2.16E-88 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_06455 0353e01b2150132842133c42b4d9b205 356 PIRSF PIRSF001361 1 354 1.7E-163 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CS348_06455 0353e01b2150132842133c42b4d9b205 356 SUPERFAMILY SSF51569 8 345 1.19E-134 T 13-10-2018 CS348_06455 0353e01b2150132842133c42b4d9b205 356 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 350 5.7E-175 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CS348_06455 0353e01b2150132842133c42b4d9b205 356 Pfam PF00793 DAHP synthetase I family 39 340 1.7E-108 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_06455 0353e01b2150132842133c42b4d9b205 356 Gene3D G3DSA:3.20.20.70 3 350 4.9E-157 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 Gene3D G3DSA:3.40.50.2300 1 126 4.2E-40 T 13-10-2018 CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 SMART SM00862 156 232 1.7E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 Gene3D G3DSA:1.10.10.10 130 239 1.2E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 SUPERFAMILY SSF46894 132 234 2.07E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 SMART SM00448 5 116 8.6E-45 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 SUPERFAMILY SSF52172 3 126 8.4E-42 T 13-10-2018 IPR011006 CheY-like superfamily CS348_01665 d8521a76d5088ea0467c0daab9e28465 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 45 64 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 90 110 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 18 41 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 3.2E-104 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 15 395 4.9E-160 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 25 41 - T 13-10-2018 IPR013061 Tryptophan/tryrosine permease, conserved site CS348_02845 4d11766ce84e446566dc0347fedc1f64 414 Pfam PF03222 Tryptophan/tyrosine permease family 10 402 1.3E-152 T 13-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 CS348_08690 40418644cee0c590385b93a7505f5015 506 SUPERFAMILY SSF52540 253 487 7.61E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08690 40418644cee0c590385b93a7505f5015 506 SMART SM00382 288 483 0.66 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_08690 40418644cee0c590385b93a7505f5015 506 SMART SM00382 38 233 1.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_08690 40418644cee0c590385b93a7505f5015 506 Gene3D G3DSA:3.40.50.300 262 502 1.1E-37 T 13-10-2018 CS348_08690 40418644cee0c590385b93a7505f5015 506 Pfam PF00005 ABC transporter 29 178 2.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_08690 40418644cee0c590385b93a7505f5015 506 SUPERFAMILY SSF52540 12 236 9.69E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08690 40418644cee0c590385b93a7505f5015 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_08690 40418644cee0c590385b93a7505f5015 506 Pfam PF00005 ABC transporter 280 434 1.6E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_08690 40418644cee0c590385b93a7505f5015 506 Gene3D G3DSA:3.40.50.300 2 252 6.2E-58 T 13-10-2018 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 Pfam PF00005 ABC transporter 34 176 7.3E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 TIGRFAM TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT 11 369 2.1E-218 T 13-10-2018 IPR017662 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 SUPERFAMILY SSF50331 281 366 9.86E-10 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 Gene3D G3DSA:3.40.50.300 18 238 2.1E-65 T 13-10-2018 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 Gene3D G3DSA:2.40.50.140 301 359 2.8E-7 T 13-10-2018 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 Gene3D G3DSA:2.40.50.940 239 365 2.8E-7 T 13-10-2018 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 Pfam PF08402 TOBE domain 294 366 4.8E-13 T 13-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 SUPERFAMILY SSF52540 19 256 1.06E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18225 24a199d7a94dbed6a57437a8c04778f6 369 SMART SM00382 43 227 1.5E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_09090 0d174c1478347a1371afe5d4235687cf 162 Gene3D G3DSA:2.160.10.10 59 162 1.3E-26 T 13-10-2018 CS348_09090 0d174c1478347a1371afe5d4235687cf 162 PIRSF PIRSF000441 2 162 5.8E-44 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CS348_09090 0d174c1478347a1371afe5d4235687cf 162 SUPERFAMILY SSF51161 12 158 6.1E-31 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_09090 0d174c1478347a1371afe5d4235687cf 162 TIGRFAM TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB 17 161 6.8E-96 T 13-10-2018 IPR024027 Colanic acid biosynthesis, acetyltransferase, WcaB GO:0016747 CS348_09090 0d174c1478347a1371afe5d4235687cf 162 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 141 5.7E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_09090 0d174c1478347a1371afe5d4235687cf 162 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_12100 1536bc93b42950cb6b443d31d45c7518 514 SUPERFAMILY SSF54862 1 503 1.99E-182 T 13-10-2018 CS348_12100 1536bc93b42950cb6b443d31d45c7518 514 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 493 2.8E-298 T 13-10-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_12100 1536bc93b42950cb6b443d31d45c7518 514 Gene3D G3DSA:1.10.3650.10 358 435 4.1E-32 T 13-10-2018 IPR038262 Nitrate reductase beta, C-terminal domain superfamily KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_12100 1536bc93b42950cb6b443d31d45c7518 514 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 436 1.6E-29 T 13-10-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_12100 1536bc93b42950cb6b443d31d45c7518 514 Pfam PF13247 4Fe-4S dicluster domain 175 271 4.7E-37 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_12100 1536bc93b42950cb6b443d31d45c7518 514 Gene3D G3DSA:3.30.70.20 1 297 8.3E-104 T 13-10-2018 CS348_00705 cf2a0851a3a459404919e6077037c38c 83 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 3.5E-37 T 13-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 CS348_00705 cf2a0851a3a459404919e6077037c38c 83 PRINTS PR00160 Glutaredoxin signature 4 22 9.7E-18 T 13-10-2018 IPR014025 Glutaredoxin subgroup CS348_00705 cf2a0851a3a459404919e6077037c38c 83 PRINTS PR00160 Glutaredoxin signature 46 59 9.7E-18 T 13-10-2018 IPR014025 Glutaredoxin subgroup CS348_00705 cf2a0851a3a459404919e6077037c38c 83 PRINTS PR00160 Glutaredoxin signature 60 73 9.7E-18 T 13-10-2018 IPR014025 Glutaredoxin subgroup CS348_00705 cf2a0851a3a459404919e6077037c38c 83 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 13-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 CS348_00705 cf2a0851a3a459404919e6077037c38c 83 SUPERFAMILY SSF52833 1 83 4.39E-29 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_00705 cf2a0851a3a459404919e6077037c38c 83 Pfam PF00462 Glutaredoxin 4 63 1.7E-24 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CS348_00705 cf2a0851a3a459404919e6077037c38c 83 Gene3D G3DSA:3.40.30.10 1 83 3.8E-28 T 13-10-2018 CS348_17290 df8e4bcff9897a21f1a54bc9f34de73d 329 Pfam PF01032 FecCD transport family 20 323 5.0E-83 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_17290 df8e4bcff9897a21f1a54bc9f34de73d 329 SUPERFAMILY SSF81345 4 324 1.57E-70 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_17290 df8e4bcff9897a21f1a54bc9f34de73d 329 Gene3D G3DSA:1.10.3470.10 4 329 4.4E-86 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 SUPERFAMILY SSF81296 11 103 6.06E-6 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 1 104 6.4E-6 T 13-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 Pfam PF00128 Alpha amylase, catalytic domain 177 493 5.3E-84 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 SUPERFAMILY SSF51011 530 603 8.23E-12 T 13-10-2018 CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 SUPERFAMILY SSF51445 117 530 9.05E-87 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 Gene3D G3DSA:2.60.40.1180 525 603 4.7E-10 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 SMART SM00642 127 521 6.5E-81 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 Gene3D G3DSA:3.20.20.80 116 523 2.2E-128 T 13-10-2018 CS348_18360 536b3404566d4c0e7ca4c95120a58a4a 605 PIRSF PIRSF036918 1 604 5.2E-232 T 13-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 CS348_12460 ea64c2b99135850efe716fb3b0c78159 130 Gene3D G3DSA:2.40.50.200 21 130 2.3E-25 T 13-10-2018 IPR036700 Bacterial OB-fold superfamily CS348_12460 ea64c2b99135850efe716fb3b0c78159 130 SUPERFAMILY SSF101756 30 130 5.75E-28 T 13-10-2018 IPR036700 Bacterial OB-fold superfamily CS348_12460 ea64c2b99135850efe716fb3b0c78159 130 Pfam PF04076 Bacterial OB fold (BOF) protein 30 130 5.6E-38 T 13-10-2018 IPR005220 Bacterial OB-fold CS348_12460 ea64c2b99135850efe716fb3b0c78159 130 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 1 130 4.7E-52 T 13-10-2018 IPR016052 Bacteriophage 933W, L0136 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 594 603 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 405 418 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Gene3D G3DSA:3.30.450.40 11 169 8.2E-10 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Pfam PF02954 Bacterial regulatory protein, Fis family 645 684 1.9E-5 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Gene3D G3DSA:3.40.50.300 368 551 3.6E-65 T 13-10-2018 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SMART SM00382 401 545 4.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Pfam PF01590 GAF domain 202 344 5.3E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SUPERFAMILY SSF46689 594 687 5.38E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Gene3D G3DSA:1.10.8.60 552 618 8.5E-23 T 13-10-2018 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SMART SM00065 26 174 6.7E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SMART SM00065 202 354 3.4E-24 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SUPERFAMILY SSF55781 184 360 2.84E-22 T 13-10-2018 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SUPERFAMILY SSF52540 380 618 8.23E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Gene3D G3DSA:3.30.450.40 186 355 3.3E-27 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Pfam PF00158 Sigma-54 interaction domain 381 548 4.1E-70 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 Gene3D G3DSA:1.10.10.60 633 689 2.0E-9 T 13-10-2018 CS348_05735 197f91273da2bd7cb2e049c0f305e5ed 692 SUPERFAMILY SSF55781 26 168 6.11E-10 T 13-10-2018 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 Pfam PF00248 Aldo/keto reductase family 22 262 4.7E-40 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PIRSF PIRSF000097 113 280 3.8E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PIRSF PIRSF000097 2 117 3.8E-36 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PRINTS PR00069 Aldo-keto reductase signature 198 222 1.0E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PRINTS PR00069 Aldo-keto reductase signature 35 59 1.0E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PRINTS PR00069 Aldo-keto reductase signature 125 142 1.0E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PRINTS PR00069 Aldo-keto reductase signature 159 188 1.0E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 PRINTS PR00069 Aldo-keto reductase signature 96 114 1.0E-39 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 SUPERFAMILY SSF51430 5 265 2.1E-81 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_11560 633a86b22eeb84ba00902c78d116605b 289 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 CS348_11560 633a86b22eeb84ba00902c78d116605b 289 Gene3D G3DSA:3.20.20.100 1 283 1.5E-102 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 SMART SM00487 1 179 3.0E-19 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 Pfam PF00271 Helicase conserved C-terminal domain 241 343 2.3E-13 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 SUPERFAMILY SSF57829 424 465 1.28E-6 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 SMART SM00490 263 345 1.8E-10 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 SUPERFAMILY SSF52540 50 363 6.61E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 Gene3D G3DSA:3.40.50.300 2 169 5.3E-30 T 13-10-2018 CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 Gene3D G3DSA:3.40.50.300 186 376 6.0E-35 T 13-10-2018 CS348_08490 be0f1d823b79784e1e0a3130184f0296 586 Pfam PF04851 Type III restriction enzyme, res subunit 3 154 2.5E-24 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Gene3D G3DSA:3.30.1490.100 245 354 1.1E-8 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Pfam PF00817 impB/mucB/samB family 6 150 1.4E-37 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 SUPERFAMILY SSF100879 247 346 4.12E-8 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Gene3D G3DSA:1.10.150.20 179 231 7.4E-9 T 13-10-2018 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Pfam PF11798 IMS family HHH motif 173 200 1.9E-5 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 SUPERFAMILY SSF56672 1 237 9.78E-71 T 13-10-2018 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Pfam PF11799 impB/mucB/samB family C-terminal domain 243 351 6.7E-16 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Gene3D G3DSA:3.30.70.270 4 154 2.4E-44 T 13-10-2018 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Pfam PF13438 Domain of unknown function (DUF4113) 371 421 3.0E-22 T 13-10-2018 IPR025188 Domain of unknown function DUF4113 CS348_09755 8aca73175f36b4c674b18e984fc2054f 422 Gene3D G3DSA:2.30.40.20 10 73 2.4E-44 T 13-10-2018 CS348_20235 5557f045c9c6fda45c85126c5f71c835 172 Gene3D G3DSA:2.60.40.1090 21 172 6.0E-48 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_20235 5557f045c9c6fda45c85126c5f71c835 172 SUPERFAMILY SSF49401 25 172 5.97E-39 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_20235 5557f045c9c6fda45c85126c5f71c835 172 Pfam PF00419 Fimbrial protein 27 171 1.5E-22 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 ProSitePatterns PS00834 Aspartyl proteases, omptin family signature 1. 115 124 - T 13-10-2018 IPR020079 Peptidase A26, omptin, conserved site GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 ProSitePatterns PS00835 Aspartyl proteases, omptin family signature 2. 152 168 - T 13-10-2018 IPR020079 Peptidase A26, omptin, conserved site GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 38 52 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 115 142 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 234 254 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 83 108 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 143 170 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 57 82 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 208 229 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 255 275 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PRINTS PR00482 Omptin serine protease signature 186 207 1.1E-101 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 SUPERFAMILY SSF69917 25 312 9.15E-108 T 13-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 Pfam PF01278 Omptin family 31 312 4.4E-125 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 Gene3D G3DSA:2.40.128.90 21 312 2.9E-123 T 13-10-2018 CS348_07655 de83ca5dbd66fc7c921af14b8e5d8b88 312 PIRSF PIRSF001522 1 312 3.2E-144 T 13-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 CS348_23160 f6ff9cef708b1b39ac4d38cc0f8e59fc 336 Gene3D G3DSA:3.40.190.90 110 277 6.1E-132 T 13-10-2018 CS348_23160 f6ff9cef708b1b39ac4d38cc0f8e59fc 336 SUPERFAMILY SSF56655 2 325 1.59E-111 T 13-10-2018 CS348_23160 f6ff9cef708b1b39ac4d38cc0f8e59fc 336 Gene3D G3DSA:3.30.540.10 7 320 6.1E-132 T 13-10-2018 CS348_23160 f6ff9cef708b1b39ac4d38cc0f8e59fc 336 PIRSF PIRSF004532 1 333 9.8E-141 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CS348_23160 f6ff9cef708b1b39ac4d38cc0f8e59fc 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 334 2.6E-183 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CS348_23160 f6ff9cef708b1b39ac4d38cc0f8e59fc 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 4.6E-132 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 615 25.652 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 SUPERFAMILY SSF55874 1 200 2.88E-56 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 SUPERFAMILY SSF118116 437 617 1.18E-44 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 SUPERFAMILY SSF54211 191 331 4.93E-35 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Pfam PF08676 MutL C terminal dimerisation domain 438 567 3.1E-25 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 SMART SM01340 212 331 7.8E-54 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 SMART SM00853 441 576 7.3E-20 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 13-10-2018 IPR014762 DNA mismatch repair, conserved site CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Gene3D G3DSA:2.30.42.20 438 614 1.4E-67 T 13-10-2018 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 311 5.8E-107 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 330 1.5E-35 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Gene3D G3DSA:3.30.565.10 1 216 1.1E-72 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Gene3D G3DSA:3.30.1370.100 482 569 1.4E-67 T 13-10-2018 CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Gene3D G3DSA:3.30.230.10 217 330 4.9E-41 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_21825 e44d36c2556a4e9527437d5d070b7ad3 618 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 120 1.4E-12 T 13-10-2018 CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 Pfam PF12464 Maltose acetyltransferase 7 57 2.9E-17 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 163 5.8E-10 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 SMART SM01266 5 59 2.2E-21 T 13-10-2018 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 92 109 0.0039 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 Gene3D G3DSA:2.160.10.10 2 183 4.8E-69 T 13-10-2018 CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_18005 0ded2795ca5c601dac3e18c84716c11f 183 SUPERFAMILY SSF51161 3 182 8.04E-51 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_02200 93564d97600eec7ddf3094e3d5d70623 190 Gene3D G3DSA:3.90.870.10 1 188 2.6E-66 T 13-10-2018 CS348_02200 93564d97600eec7ddf3094e3d5d70623 190 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 7 188 40.603 T 13-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 CS348_02200 93564d97600eec7ddf3094e3d5d70623 190 Pfam PF01300 Telomere recombination 16 189 5.1E-43 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CS348_02200 93564d97600eec7ddf3094e3d5d70623 190 SUPERFAMILY SSF55821 5 187 3.97E-56 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 7.8E-67 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 6.4E-51 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 6.4E-51 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 6.4E-51 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 6.4E-51 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 240 16.111 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 3.7E-79 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CS348_23930 96453a668a0a30b23e1b3d08a0c41e28 259 ProSitePatterns PS01218 TatC family signature. 154 173 - T 13-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 SUPERFAMILY SSF55021 79 162 4.12E-25 T 13-10-2018 CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 Pfam PF10369 Small subunit of acetolactate synthase 84 158 1.2E-23 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 Gene3D G3DSA:3.30.70.260 1 79 8.7E-35 T 13-10-2018 CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 Gene3D G3DSA:3.30.70.1150 80 157 5.3E-28 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 7.0E-69 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 Pfam PF13710 ACT domain 12 73 3.0E-15 T 13-10-2018 CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 6.0E-37 T 13-10-2018 CS348_19750 30131b716c8cec12a8485943c15ed6e0 168 SUPERFAMILY SSF55021 2 74 2.08E-22 T 13-10-2018 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 PIRSF PIRSF001456 3 359 2.1E-141 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 Pfam PF01264 Chorismate synthase 10 345 1.9E-142 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 3.2E-139 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 SUPERFAMILY SSF103263 4 355 4.32E-148 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 Gene3D G3DSA:3.60.150.10 1 360 3.4E-159 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_07715 ee240df4df9c1c010517a7d0cd66d093 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 37.659 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CS348_05045 b12c0a44838597ee7b4604d541933131 417 SUPERFAMILY SSF53187 188 407 1.48E-53 T 13-10-2018 CS348_05045 b12c0a44838597ee7b4604d541933131 417 Gene3D G3DSA:2.60.40.3500 25 145 4.6E-34 T 13-10-2018 CS348_05045 b12c0a44838597ee7b4604d541933131 417 SMART SM00646 250 404 5.0E-70 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CS348_05045 b12c0a44838597ee7b4604d541933131 417 Gene3D G3DSA:3.40.630.40 175 417 4.2E-95 T 13-10-2018 CS348_05045 b12c0a44838597ee7b4604d541933131 417 Pfam PF11741 AMIN domain 39 142 9.7E-27 T 13-10-2018 IPR021731 AMIN domain CS348_05045 b12c0a44838597ee7b4604d541933131 417 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 190 404 3.3E-51 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 Gene3D G3DSA:3.20.20.70 349 642 5.3E-47 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 Pfam PF00294 pfkB family carbohydrate kinase 15 330 2.0E-44 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 14 338 6.9E-126 T 13-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 333 641 8.8E-136 T 13-10-2018 IPR018659 Protein of unknown function DUF2090 CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 282 295 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 SUPERFAMILY SSF53613 13 338 1.53E-71 T 13-10-2018 IPR029056 Ribokinase-like CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 Gene3D G3DSA:3.40.1190.20 17 320 9.4E-90 T 13-10-2018 IPR029056 Ribokinase-like CS348_21450 c21940d5f0b9572e4d7e3e820d77cb3e 645 Gene3D G3DSA:2.20.150.10 22 117 9.4E-90 T 13-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 CS348_00160 2ca7cf5c52ff701ecb0aa20bb9d385e1 120 Pfam PF02656 Domain of unknown function (DUF202) 12 66 1.4E-7 T 13-10-2018 IPR003807 Domain of unknown function DUF202 CS348_00160 2ca7cf5c52ff701ecb0aa20bb9d385e1 120 ProDom PD277113 MEMBRANE INNER YIDG TRANSMEMBRANE STY3975 RV2273/MT2334 MB2296 8 71 6.0E-22 T 13-10-2018 IPR020264 Uncharacterised protein family YidG CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 Gene3D G3DSA:3.40.190.10 164 266 1.8E-56 T 13-10-2018 CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 SUPERFAMILY SSF53850 89 296 2.71E-43 T 13-10-2018 CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.2E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 SUPERFAMILY SSF46785 4 83 1.49E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 Gene3D G3DSA:3.40.190.10 91 290 1.8E-56 T 13-10-2018 CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 Gene3D G3DSA:1.10.10.10 2 88 1.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11555 01cabaa927fdb7bc90e5cc8bf8b969ff 301 Pfam PF03466 LysR substrate binding domain 88 294 1.4E-42 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_14215 5a2673431512b4488bf60f29ea1b0acc 416 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 29 412 7.2E-118 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CS348_14215 5a2673431512b4488bf60f29ea1b0acc 416 SMART SM01329 28 412 2.2E-181 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CS348_14215 5a2673431512b4488bf60f29ea1b0acc 416 Gene3D G3DSA:3.40.718.10 1 416 4.7E-187 T 13-10-2018 CS348_14215 5a2673431512b4488bf60f29ea1b0acc 416 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 416 4.4E-239 T 13-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CS348_14215 5a2673431512b4488bf60f29ea1b0acc 416 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 303 322 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 CS348_14215 5a2673431512b4488bf60f29ea1b0acc 416 SUPERFAMILY SSF53659 3 416 4.22E-150 T 13-10-2018 CS348_17270 6567b67ef6d7511b37601903f356d623 391 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 112 387 3.2E-82 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 CS348_17270 6567b67ef6d7511b37601903f356d623 391 Pfam PF00425 chorismate binding enzyme 126 380 1.1E-65 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CS348_17270 6567b67ef6d7511b37601903f356d623 391 Gene3D G3DSA:3.60.120.10 1 391 1.5E-139 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_17270 6567b67ef6d7511b37601903f356d623 391 SUPERFAMILY SSF56322 14 389 1.96E-86 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_10070 d43545e6f9c4a1fb13b6987b0ca422f7 212 Gene3D G3DSA:3.40.1400.10 1 212 2.1E-95 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CS348_10070 d43545e6f9c4a1fb13b6987b0ca422f7 212 SUPERFAMILY SSF89623 1 161 2.75E-36 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CS348_10070 d43545e6f9c4a1fb13b6987b0ca422f7 212 Pfam PF02502 Ribose/Galactose Isomerase 3 138 1.4E-28 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 CS348_10070 d43545e6f9c4a1fb13b6987b0ca422f7 212 Pfam PF12408 Ribose-5-phosphate isomerase 164 209 1.4E-20 T 13-10-2018 IPR022133 Ribose-5-phosphate isomerase, C-terminal CS348_16770 785f1ca732d960903cb23082d3f093af 546 SUPERFAMILY SSF53738 26 235 8.01E-50 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 SUPERFAMILY SSF55957 433 544 5.93E-20 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 481 538 3.8E-8 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 SUPERFAMILY SSF53738 209 317 1.41E-8 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 SUPERFAMILY SSF53738 305 446 3.83E-32 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Gene3D G3DSA:3.40.120.10 319 442 9.1E-37 T 13-10-2018 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 4.8E-21 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 0.0 T 13-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Gene3D G3DSA:3.40.120.10 12 218 2.3E-81 T 13-10-2018 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Gene3D G3DSA:3.30.310.50 443 546 2.9E-36 T 13-10-2018 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 179 2.9E-36 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Gene3D G3DSA:3.40.120.10 221 318 3.2E-46 T 13-10-2018 CS348_16770 785f1ca732d960903cb23082d3f093af 546 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 4.1E-30 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CS348_19135 b9f78739619e4955c80adf69732d3413 319 SUPERFAMILY SSF52096 5 318 1.65E-103 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_19135 b9f78739619e4955c80adf69732d3413 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 1.6E-173 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.767 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.2E-50 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.2E-50 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.2E-50 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.2E-50 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.2E-50 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.2E-50 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_19135 b9f78739619e4955c80adf69732d3413 319 Gene3D G3DSA:3.90.226.10 4 319 1.7E-123 T 13-10-2018 CS348_19135 b9f78739619e4955c80adf69732d3413 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 3.6E-62 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 SUPERFAMILY SSF56712 1 601 4.32E-183 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Gene3D G3DSA:2.70.20.10 212 483 1.1E-154 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 616 643 9.1E-8 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 SMART SM00437 272 553 9.5E-67 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Gene3D G3DSA:3.40.50.140 1 150 3.2E-48 T 13-10-2018 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 SUPERFAMILY SSF57783 611 645 4.59E-7 T 13-10-2018 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Pfam PF01751 Toprim domain 3 130 7.3E-20 T 13-10-2018 IPR006171 TOPRIM domain CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Pfam PF01131 DNA topoisomerase 150 587 3.5E-117 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Gene3D G3DSA:1.10.290.10 281 410 1.1E-154 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 315 324 5.6E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 5.6E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 188 206 5.6E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 97 110 5.6E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 516 530 5.6E-26 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 665 3.5E-298 T 13-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 SMART SM00436 123 218 1.8E-31 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 SMART SM00493 1 123 4.3E-23 T 13-10-2018 IPR006171 TOPRIM domain CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 Gene3D G3DSA:1.10.460.10 159 597 1.1E-154 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CS348_03795 7d4ae33c5e0ff966ad1eb7baa45c26e2 672 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 324 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 CS348_15170 e6db56172287b93a4f592c1923219f21 187 Gene3D G3DSA:3.40.50.10610 17 183 4.1E-7 T 13-10-2018 CS348_15170 e6db56172287b93a4f592c1923219f21 187 SUPERFAMILY SSF159594 24 184 1.96E-31 T 13-10-2018 CS348_15170 e6db56172287b93a4f592c1923219f21 187 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 26 180 3.0E-42 T 13-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component CS348_00125 5d7bbcf35ee238d8954a319a8ee599b4 347 Pfam PF14559 Tetratricopeptide repeat 240 304 9.5E-7 T 13-10-2018 CS348_00125 5d7bbcf35ee238d8954a319a8ee599b4 347 SUPERFAMILY SSF48452 224 328 6.64E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_00125 5d7bbcf35ee238d8954a319a8ee599b4 347 Gene3D G3DSA:1.25.40.10 214 347 4.5E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_00125 5d7bbcf35ee238d8954a319a8ee599b4 347 Pfam PF03918 Cytochrome C biogenesis protein 11 133 1.0E-49 T 13-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family CS348_00125 5d7bbcf35ee238d8954a319a8ee599b4 347 Gene3D G3DSA:1.10.8.640 22 108 3.7E-38 T 13-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily CS348_17525 0ca108ec4bdb1bda569ceb48b23e7f28 704 Gene3D G3DSA:3.90.226.10 21 215 1.2E-47 T 13-10-2018 CS348_17525 0ca108ec4bdb1bda569ceb48b23e7f28 704 PRINTS PR00127 Clp protease catalytic subunit P signature 178 197 6.5E-8 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_17525 0ca108ec4bdb1bda569ceb48b23e7f28 704 PRINTS PR00127 Clp protease catalytic subunit P signature 71 91 6.5E-8 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_17525 0ca108ec4bdb1bda569ceb48b23e7f28 704 PRINTS PR00127 Clp protease catalytic subunit P signature 102 119 6.5E-8 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CS348_17525 0ca108ec4bdb1bda569ceb48b23e7f28 704 SUPERFAMILY SSF52096 28 208 1.78E-48 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_17525 0ca108ec4bdb1bda569ceb48b23e7f28 704 Pfam PF00574 Clp protease 26 201 2.0E-43 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CS348_11005 0762730d48c0f872b614c72d41310409 465 Gene3D G3DSA:1.20.1250.20 1 237 1.6E-85 T 13-10-2018 CS348_11005 0762730d48c0f872b614c72d41310409 465 Pfam PF07690 Major Facilitator Superfamily 45 422 7.2E-15 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_11005 0762730d48c0f872b614c72d41310409 465 SUPERFAMILY SSF103473 20 460 8.37E-36 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_11005 0762730d48c0f872b614c72d41310409 465 TIGRFAM TIGR00886 2A0108: nitrite transporter 36 418 1.7E-114 T 13-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 CS348_11005 0762730d48c0f872b614c72d41310409 465 Gene3D G3DSA:1.20.1250.20 238 465 1.9E-75 T 13-10-2018 CS348_04320 a2238149ff6821f517ada27df41cd931 125 Gene3D G3DSA:3.30.1330.40 1 124 7.0E-48 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_04320 a2238149ff6821f517ada27df41cd931 125 Pfam PF01042 Endoribonuclease L-PSP 7 123 1.5E-41 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CS348_04320 a2238149ff6821f517ada27df41cd931 125 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 123 3.9E-48 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 CS348_04320 a2238149ff6821f517ada27df41cd931 125 SUPERFAMILY SSF55298 2 124 2.98E-44 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_04285 f44ba5739df604c84b74d83599413295 649 Pfam PF08401 Domain of unknown function (DUF1738) 11 94 1.1E-12 T 13-10-2018 IPR013610 Domain of unknown function DUF1738 CS348_04285 f44ba5739df604c84b74d83599413295 649 Pfam PF06755 CbtA_toxin of type IV toxin-antitoxin system 266 335 3.3E-10 T 13-10-2018 IPR009610 CbtA toxin of type IV toxin-antitoxin system CS348_04285 f44ba5739df604c84b74d83599413295 649 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 521 537 3.6E-6 T 13-10-2018 CS348_04285 f44ba5739df604c84b74d83599413295 649 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 555 569 3.6E-6 T 13-10-2018 CS348_04285 f44ba5739df604c84b74d83599413295 649 Gene3D G3DSA:3.40.50.150 502 638 1.4E-15 T 13-10-2018 CS348_04285 f44ba5739df604c84b74d83599413295 649 SUPERFAMILY SSF53335 481 622 1.21E-19 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_04285 f44ba5739df604c84b74d83599413295 649 Pfam PF02384 N-6 DNA Methylase 518 620 5.7E-10 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CS348_19215 342c78515edae655eb4f74d5b737282d 283 Pfam PF00889 Elongation factor TS 71 263 9.5E-66 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 SUPERFAMILY SSF54713 142 281 4.49E-53 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 Gene3D G3DSA:1.10.286.20 187 226 1.3E-24 T 13-10-2018 CS348_19215 342c78515edae655eb4f74d5b737282d 283 SUPERFAMILY SSF54713 56 139 4.25E-20 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 Gene3D G3DSA:3.30.479.20 57 141 1.5E-32 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 SUPERFAMILY SSF46934 4 54 2.24E-18 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 CS348_19215 342c78515edae655eb4f74d5b737282d 283 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 282 8.7E-121 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_19215 342c78515edae655eb4f74d5b737282d 283 Gene3D G3DSA:1.10.8.10 1 56 2.6E-27 T 13-10-2018 CS348_19215 342c78515edae655eb4f74d5b737282d 283 Hamap MF_00050 Elongation factor Ts [tsf]. 1 280 79.584 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CS348_06375 2ce7efde41c2151491aadb0d9f706675 112 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 34.204 T 13-10-2018 IPR026592 Outer membrane protein assembly factor BamE CS348_06375 2ce7efde41c2151491aadb0d9f706675 112 Gene3D G3DSA:3.30.1450.10 34 112 1.7E-32 T 13-10-2018 IPR037873 BamE-like CS348_06375 2ce7efde41c2151491aadb0d9f706675 112 Pfam PF04355 SmpA / OmlA family 35 104 7.4E-28 T 13-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 484 5.3E-61 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 SMART SM00304 216 268 1.5E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 SMART SM00283 269 516 4.8E-97 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 Gene3D G3DSA:1.20.120.30 22 194 1.4E-71 T 13-10-2018 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 SMART SM00319 44 182 3.1E-55 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 Gene3D G3DSA:1.10.287.950 216 518 8.5E-102 T 13-10-2018 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 Pfam PF00672 HAMP domain 217 263 8.6E-11 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 7.3E-92 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 13-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 Pfam PF02203 Tar ligand binding domain homologue 1 176 1.6E-56 T 13-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 SUPERFAMILY SSF47170 25 182 5.36E-50 T 13-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily CS348_20970 a0f338940883f7ecae2c6946830b1d7a 553 SUPERFAMILY SSF58104 236 520 3.01E-76 T 13-10-2018 CS348_10705 af00990417fd55cd1f8f4ffcc79acb16 114 Pfam PF01042 Endoribonuclease L-PSP 5 114 4.2E-26 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CS348_10705 af00990417fd55cd1f8f4ffcc79acb16 114 SUPERFAMILY SSF55298 6 114 4.08E-26 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_10705 af00990417fd55cd1f8f4ffcc79acb16 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 CS348_10705 af00990417fd55cd1f8f4ffcc79acb16 114 Gene3D G3DSA:3.30.1330.40 1 114 2.7E-35 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 PIRSF PIRSF000770 9 284 1.1E-33 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 283 1.1E-129 T 13-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 SUPERFAMILY SSF88659 200 283 4.3E-19 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 Gene3D G3DSA:1.20.140.160 128 284 5.6E-16 T 13-10-2018 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 Pfam PF04545 Sigma-70, region 4 228 280 6.6E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 281 4.4E-35 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 Pfam PF04542 Sigma-70 region 2 53 122 1.2E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 55.259 T 13-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 Gene3D G3DSA:1.20.120.1810 6 122 1.0E-27 T 13-10-2018 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 SUPERFAMILY SSF88946 15 122 2.09E-38 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 PRINTS PR00046 Major sigma-70 factor signature 77 90 4.9E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 PRINTS PR00046 Major sigma-70 factor signature 232 244 4.9E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 4.9E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 4.9E-19 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_01395 28f7fed410a0ac60a4807dfd5f4929f2 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_19010 ace24ac1546c5ead94d93ddfbfa26c80 391 Gene3D G3DSA:1.20.1250.20 194 380 2.5E-22 T 13-10-2018 CS348_19010 ace24ac1546c5ead94d93ddfbfa26c80 391 Pfam PF07690 Major Facilitator Superfamily 9 319 4.2E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_19010 ace24ac1546c5ead94d93ddfbfa26c80 391 Gene3D G3DSA:1.20.1250.20 2 182 4.6E-25 T 13-10-2018 CS348_19010 ace24ac1546c5ead94d93ddfbfa26c80 391 SUPERFAMILY SSF103473 3 385 1.7E-61 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_25075 61ad8018368a2d974d2e363fa4773907 389 Gene3D G3DSA:3.40.50.300 132 389 3.0E-60 T 13-10-2018 CS348_25075 61ad8018368a2d974d2e363fa4773907 389 SUPERFAMILY SSF52540 14 371 3.8E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_25075 61ad8018368a2d974d2e363fa4773907 389 Gene3D G3DSA:3.30.450.90 14 131 2.1E-5 T 13-10-2018 CS348_25075 61ad8018368a2d974d2e363fa4773907 389 Pfam PF00437 Type II/IV secretion system protein 27 296 3.0E-26 T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_25075 61ad8018368a2d974d2e363fa4773907 389 TIGRFAM TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ 7 380 3.3E-148 T 13-10-2018 IPR013364 ATPase, plasmid transfer, TraJ CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 PIRSF PIRSF003167 1 597 2.1E-193 T 13-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Gene3D G3DSA:3.30.565.10 454 587 1.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 SMART SM00304 176 228 1.8E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 SUPERFAMILY SSF55874 466 583 5.76E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 497 585 6.7E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Gene3D G3DSA:1.10.287.130 176 263 1.4E-5 T 13-10-2018 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 SUPERFAMILY SSF158472 177 225 8.63E-6 T 13-10-2018 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Gene3D G3DSA:1.20.120.960 42 148 8.8E-40 T 13-10-2018 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Pfam PF07730 Histidine kinase 390 453 8.5E-18 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Pfam PF00672 HAMP domain 177 224 3.7E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 SMART SM00387 494 587 2.3E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_10995 9bedfd9591f6f4ea636685740420cbb7 598 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 35 119 3.2E-10 T 13-10-2018 IPR029095 NarX-like, N-terminal CS348_15995 9f68988892309a4ebe962f93c3dfed08 202 Pfam PF01569 PAP2 superfamily 63 175 1.1E-12 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_15995 9f68988892309a4ebe962f93c3dfed08 202 SMART SM00014 61 169 1.3E-26 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_15995 9f68988892309a4ebe962f93c3dfed08 202 SUPERFAMILY SSF48317 2 200 6.54E-41 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CS348_15995 9f68988892309a4ebe962f93c3dfed08 202 Gene3D G3DSA:1.20.144.10 94 186 8.7E-15 T 13-10-2018 CS348_11920 131a7ecae54f69b19d0d046c513d9e1c 179 Pfam PF13302 Acetyltransferase (GNAT) domain 11 151 5.7E-19 T 13-10-2018 IPR000182 GNAT domain CS348_11920 131a7ecae54f69b19d0d046c513d9e1c 179 SUPERFAMILY SSF55729 7 175 1.6E-43 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_11920 131a7ecae54f69b19d0d046c513d9e1c 179 Gene3D G3DSA:3.40.630.30 1 179 5.0E-50 T 13-10-2018 CS348_21315 e2ee10f774a51c651f1a57616595dc6b 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 CS348_21315 e2ee10f774a51c651f1a57616595dc6b 128 Pfam PF01042 Endoribonuclease L-PSP 7 126 1.2E-44 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CS348_21315 e2ee10f774a51c651f1a57616595dc6b 128 SUPERFAMILY SSF55298 4 127 1.73E-43 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_21315 e2ee10f774a51c651f1a57616595dc6b 128 Gene3D G3DSA:3.30.1330.40 1 128 5.4E-48 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_21315 e2ee10f774a51c651f1a57616595dc6b 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 2.3E-53 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 CS348_22440 958a26bf4af2218eba299091cd68e95a 118 Pfam PF04237 YjbR 12 101 2.9E-18 T 13-10-2018 IPR007351 Uncharacterised protein YjbR CS348_22440 958a26bf4af2218eba299091cd68e95a 118 SUPERFAMILY SSF142906 1 115 1.83E-35 T 13-10-2018 IPR038056 YjbR-like superfamily CS348_22440 958a26bf4af2218eba299091cd68e95a 118 Gene3D G3DSA:3.90.1150.30 1 118 1.2E-42 T 13-10-2018 IPR038056 YjbR-like superfamily CS348_23800 459da4302b9dfce99c19817e33f0402a 210 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 14 197 28.531 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CS348_23800 459da4302b9dfce99c19817e33f0402a 210 Gene3D G3DSA:3.40.50.300 1 210 8.0E-63 T 13-10-2018 CS348_23800 459da4302b9dfce99c19817e33f0402a 210 Pfam PF01926 50S ribosome-binding GTPase 28 146 2.6E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_23800 459da4302b9dfce99c19817e33f0402a 210 SUPERFAMILY SSF52540 21 199 2.01E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23800 459da4302b9dfce99c19817e33f0402a 210 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 10 193 1.5E-75 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CS348_24950 10dd098252363607ad744be3c83e5be9 210 Gene3D G3DSA:1.10.10.10 133 197 5.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24950 10dd098252363607ad744be3c83e5be9 210 SMART SM00448 4 115 8.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_24950 10dd098252363607ad744be3c83e5be9 210 SUPERFAMILY SSF52172 1 137 8.11E-30 T 13-10-2018 IPR011006 CheY-like superfamily CS348_24950 10dd098252363607ad744be3c83e5be9 210 SUPERFAMILY SSF46894 128 197 5.44E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_24950 10dd098252363607ad744be3c83e5be9 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_24950 10dd098252363607ad744be3c83e5be9 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_24950 10dd098252363607ad744be3c83e5be9 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 1.4E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_24950 10dd098252363607ad744be3c83e5be9 210 Pfam PF00072 Response regulator receiver domain 6 115 1.2E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_24950 10dd098252363607ad744be3c83e5be9 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_24950 10dd098252363607ad744be3c83e5be9 210 SMART SM00421 139 196 3.1E-20 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_24950 10dd098252363607ad744be3c83e5be9 210 Gene3D G3DSA:3.40.50.2300 1 130 1.8E-36 T 13-10-2018 CS348_24950 10dd098252363607ad744be3c83e5be9 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 195 1.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_18045 23756ef3d0647c0663e9853f1c49841a 286 Gene3D G3DSA:3.10.129.10 131 286 2.1E-61 T 13-10-2018 CS348_18045 23756ef3d0647c0663e9853f1c49841a 286 SUPERFAMILY SSF54637 4 114 9.53E-42 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_18045 23756ef3d0647c0663e9853f1c49841a 286 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 1.2E-101 T 13-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 CS348_18045 23756ef3d0647c0663e9853f1c49841a 286 Gene3D G3DSA:3.10.129.10 2 116 1.9E-47 T 13-10-2018 CS348_18045 23756ef3d0647c0663e9853f1c49841a 286 Pfam PF13622 Thioesterase-like superfamily 33 282 1.9E-56 T 13-10-2018 CS348_18045 23756ef3d0647c0663e9853f1c49841a 286 SUPERFAMILY SSF54637 116 284 1.01E-56 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_03885 d5f90d9a1dc4a8944cf9e2e01510c60d 383 SUPERFAMILY SSF143100 311 365 4.05E-5 T 13-10-2018 IPR035069 TTHA1013/TTHA0281-like CS348_03885 d5f90d9a1dc4a8944cf9e2e01510c60d 383 Gene3D G3DSA:1.10.150.130 7 118 9.3E-7 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_03885 d5f90d9a1dc4a8944cf9e2e01510c60d 383 Gene3D G3DSA:1.10.443.10 121 288 5.0E-32 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_03885 d5f90d9a1dc4a8944cf9e2e01510c60d 383 Pfam PF00589 Phage integrase family 123 276 2.3E-25 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_03885 d5f90d9a1dc4a8944cf9e2e01510c60d 383 SUPERFAMILY SSF56349 10 280 2.83E-57 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_03885 d5f90d9a1dc4a8944cf9e2e01510c60d 383 Gene3D G3DSA:3.30.160.250 300 376 2.6E-5 T 13-10-2018 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 SUPERFAMILY SSF53822 61 332 1.92E-83 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 Gene3D G3DSA:3.40.50.2300 160 289 2.2E-70 T 13-10-2018 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 SMART SM00354 1 71 1.0E-34 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 Gene3D G3DSA:1.10.260.40 3 59 5.9E-21 T 13-10-2018 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 SUPERFAMILY SSF47413 1 59 5.38E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.1E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-7 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.6E-35 T 13-10-2018 CS348_04940 7a7216c2f2323bf00faf68011c11c63b 342 Gene3D G3DSA:3.40.50.2300 61 305 2.2E-70 T 13-10-2018 CS348_13380 2a20174d87168ef6bc2d2dafc8b21fe0 326 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 1 326 32.568 T 13-10-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 CS348_13380 2a20174d87168ef6bc2d2dafc8b21fe0 326 Pfam PF01032 FecCD transport family 22 323 4.1E-87 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_13380 2a20174d87168ef6bc2d2dafc8b21fe0 326 SUPERFAMILY SSF81345 6 323 5.62E-85 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_13380 2a20174d87168ef6bc2d2dafc8b21fe0 326 Gene3D G3DSA:1.10.3470.10 1 326 2.3E-121 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_00065 0f6f46324644428e43105859e752b6fa 230 SMART SM00448 3 113 1.3E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_00065 0f6f46324644428e43105859e752b6fa 230 SUPERFAMILY SSF52172 2 129 3.13E-33 T 13-10-2018 IPR011006 CheY-like superfamily CS348_00065 0f6f46324644428e43105859e752b6fa 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 225 2.7E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_00065 0f6f46324644428e43105859e752b6fa 230 Pfam PF00072 Response regulator receiver domain 5 113 9.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_00065 0f6f46324644428e43105859e752b6fa 230 SMART SM00862 153 225 1.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_00065 0f6f46324644428e43105859e752b6fa 230 SUPERFAMILY SSF46894 128 226 2.18E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_00065 0f6f46324644428e43105859e752b6fa 230 Gene3D G3DSA:3.40.50.2300 2 122 1.5E-29 T 13-10-2018 CS348_00065 0f6f46324644428e43105859e752b6fa 230 Gene3D G3DSA:1.10.10.10 123 229 3.3E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_23570 a5d75f7a9510bdd4f881820b6422343d 104 TIGRFAM TIGR02625 YiiL_rotase: L-rhamnose mutarotase 3 104 1.5E-56 T 13-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 CS348_23570 a5d75f7a9510bdd4f881820b6422343d 104 SUPERFAMILY SSF54909 1 103 7.66E-37 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_23570 a5d75f7a9510bdd4f881820b6422343d 104 Hamap MF_01663 L-rhamnose mutarotase [rhaM]. 1 104 32.139 T 13-10-2018 IPR013448 L-rhamnose mutarotase GO:0005737|GO:0016857|GO:0019299 CS348_23570 a5d75f7a9510bdd4f881820b6422343d 104 Gene3D G3DSA:3.30.70.100 1 97 1.9E-38 T 13-10-2018 CS348_23570 a5d75f7a9510bdd4f881820b6422343d 104 Pfam PF05336 L-rhamnose mutarotase 3 103 1.4E-28 T 13-10-2018 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 CS348_17895 0d93ea809084dcdfeea374a216cb0c98 558 Pfam PF02254 TrkA-N domain 421 534 1.9E-24 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CS348_17895 0d93ea809084dcdfeea374a216cb0c98 558 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.3E-76 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CS348_17895 0d93ea809084dcdfeea374a216cb0c98 558 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 2.5E-76 T 13-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 CS348_17895 0d93ea809084dcdfeea374a216cb0c98 558 SUPERFAMILY SSF51735 418 549 1.04E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_17895 0d93ea809084dcdfeea374a216cb0c98 558 Gene3D G3DSA:1.20.1530.20 6 397 1.5E-79 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_17895 0d93ea809084dcdfeea374a216cb0c98 558 Gene3D G3DSA:3.40.50.720 413 550 2.3E-30 T 13-10-2018 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 8 454 1.3E-108 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 SUPERFAMILY SSF103473 8 456 1.96E-75 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 Gene3D G3DSA:1.20.1250.20 5 228 4.0E-67 T 13-10-2018 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 PRINTS PR00171 Sugar transporter signature 107 126 5.5E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 PRINTS PR00171 Sugar transporter signature 24 34 5.5E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 PRINTS PR00171 Sugar transporter signature 354 375 5.5E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 PRINTS PR00171 Sugar transporter signature 269 279 5.5E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 PRINTS PR00171 Sugar transporter signature 377 389 5.5E-23 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 Pfam PF00083 Sugar (and other) transporter 17 457 1.0E-105 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_21510 7dd8c9114542be18c1a31f86b2b8975d 477 Gene3D G3DSA:1.20.1250.20 232 470 3.0E-61 T 13-10-2018 CS348_19865 47dfcab61d3cf91bcf69a01bde3ee030 219 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_19865 47dfcab61d3cf91bcf69a01bde3ee030 219 Pfam PF00849 RNA pseudouridylate synthase 22 169 1.9E-29 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_19865 47dfcab61d3cf91bcf69a01bde3ee030 219 SUPERFAMILY SSF55120 8 216 6.4E-62 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_19865 47dfcab61d3cf91bcf69a01bde3ee030 219 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 7 217 5.1E-59 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_19865 47dfcab61d3cf91bcf69a01bde3ee030 219 Gene3D G3DSA:3.30.2350.10 4 219 3.3E-73 T 13-10-2018 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 Gene3D G3DSA:1.10.10.10 1 84 3.9E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08620 68a916825c4f8db6da8815be059e7bba 287 Pfam PF03466 LysR substrate binding domain 86 286 1.3E-51 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_08620 68a916825c4f8db6da8815be059e7bba 287 Gene3D G3DSA:3.40.190.10 89 284 2.0E-47 T 13-10-2018 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 SUPERFAMILY SSF46785 2 109 1.9E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08620 68a916825c4f8db6da8815be059e7bba 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 Gene3D G3DSA:3.40.190.10 162 262 2.0E-47 T 13-10-2018 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.4E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_08620 68a916825c4f8db6da8815be059e7bba 287 SUPERFAMILY SSF53850 88 286 1.3E-47 T 13-10-2018 CS348_03005 621d931b9dd67f6728bdebc9b099785a 443 Pfam PF03222 Tryptophan/tyrosine permease family 29 438 8.1E-9 T 13-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 CS348_03005 621d931b9dd67f6728bdebc9b099785a 443 TIGRFAM TIGR00814 stp: serine transporter 17 433 3.1E-171 T 13-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 CS348_03005 621d931b9dd67f6728bdebc9b099785a 443 Hamap MF_01583 Threonine/serine transporter TdcC [tdcC]. 1 443 54.827 T 13-10-2018 IPR023726 Threonine/serine transporter TdcC GO:0015565|GO:0015826|GO:0016021|GO:0022889|GO:0032329 CS348_03700 ee5a5126c4dd0df7e21102782aefd98d 394 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 25 374 6.5E-128 T 13-10-2018 CS348_03700 ee5a5126c4dd0df7e21102782aefd98d 394 Gene3D G3DSA:3.20.20.70 22 376 8.7E-92 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_03700 ee5a5126c4dd0df7e21102782aefd98d 394 Pfam PF04055 Radical SAM superfamily 31 185 3.5E-10 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_03700 ee5a5126c4dd0df7e21102782aefd98d 394 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 202 364 8.0E-9 T 13-10-2018 CS348_03700 ee5a5126c4dd0df7e21102782aefd98d 394 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 276 350 2.9E-14 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_03700 ee5a5126c4dd0df7e21102782aefd98d 394 SUPERFAMILY SSF102114 30 344 2.49E-36 T 13-10-2018 CS348_15285 974b86d5ad2d82fd0a08c1cd16cdb1ec 248 Pfam PF02348 Cytidylyltransferase 4 221 9.1E-73 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 CS348_15285 974b86d5ad2d82fd0a08c1cd16cdb1ec 248 SUPERFAMILY SSF53448 3 245 1.37E-65 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_15285 974b86d5ad2d82fd0a08c1cd16cdb1ec 248 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 3.3E-134 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 CS348_15285 974b86d5ad2d82fd0a08c1cd16cdb1ec 248 Gene3D G3DSA:3.90.550.10 3 248 2.9E-96 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_15285 974b86d5ad2d82fd0a08c1cd16cdb1ec 248 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 45.73 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 CS348_09935 7b3ff2d5ef1c9debc1d33b4549833826 135 PIRSF PIRSF039090 1 135 2.6E-46 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 CS348_09935 7b3ff2d5ef1c9debc1d33b4549833826 135 Gene3D G3DSA:1.20.120.340 1 129 7.0E-42 T 13-10-2018 CS348_09935 7b3ff2d5ef1c9debc1d33b4549833826 135 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 5.1E-44 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 CS348_09935 7b3ff2d5ef1c9debc1d33b4549833826 135 Pfam PF02561 Flagellar protein FliS 8 125 1.3E-40 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 CS348_09935 7b3ff2d5ef1c9debc1d33b4549833826 135 SUPERFAMILY SSF101116 9 128 6.15E-41 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 CS348_13755 ce79105a3d2e2ec8dda6c3ffbf6a96c3 106 Gene3D G3DSA:3.40.50.2300 1 106 4.4E-34 T 13-10-2018 CS348_13755 ce79105a3d2e2ec8dda6c3ffbf6a96c3 106 SUPERFAMILY SSF52794 4 102 6.02E-32 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_13755 ce79105a3d2e2ec8dda6c3ffbf6a96c3 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 94 8.8E-16 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_13755 ce79105a3d2e2ec8dda6c3ffbf6a96c3 106 TIGRFAM TIGR00853 pts-lac: PTS system, lactose/cellobiose family IIB component 1 94 1.9E-33 T 13-10-2018 IPR013012 Phosphotransferase system, EIIB component, type 3 GO:0008982|GO:0009401 CS348_07585 b41073a9fedad43884690dc8e2e6e385 108 Pfam PF10697 Protein of unknown function (DUF2502) 23 106 6.7E-23 T 13-10-2018 IPR019638 Protein of unknown function DUF2502 CS348_03660 2689ae800c5c716cc1602f5390d1a46d 161 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 13 143 2.0E-18 T 13-10-2018 IPR008514 Type VI secretion system effector, Hcp CS348_03660 2689ae800c5c716cc1602f5390d1a46d 161 SUPERFAMILY SSF141452 2 156 1.02E-46 T 13-10-2018 IPR036624 Hcp1-like superfamily CS348_03660 2689ae800c5c716cc1602f5390d1a46d 161 Gene3D G3DSA:2.30.110.20 2 158 6.5E-45 T 13-10-2018 IPR036624 Hcp1-like superfamily CS348_03660 2689ae800c5c716cc1602f5390d1a46d 161 Pfam PF05638 Type VI secretion system effector, Hcp 5 134 4.9E-36 T 13-10-2018 IPR008514 Type VI secretion system effector, Hcp CS348_18905 28d9052789614721c3b55db53ae99aeb 374 Gene3D G3DSA:3.30.1920.10 199 273 9.0E-107 T 13-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold CS348_18905 28d9052789614721c3b55db53ae99aeb 374 Gene3D G3DSA:2.30.300.10 7 331 9.0E-107 T 13-10-2018 CS348_18905 28d9052789614721c3b55db53ae99aeb 374 PIRSF PIRSF004440 1 359 8.6E-90 T 13-10-2018 IPR026276 Baseplate protein GpP CS348_18905 28d9052789614721c3b55db53ae99aeb 374 SUPERFAMILY SSF69279 4 176 1.53E-52 T 13-10-2018 CS348_18905 28d9052789614721c3b55db53ae99aeb 374 Gene3D G3DSA:3.55.50.10 89 176 9.0E-107 T 13-10-2018 CS348_18905 28d9052789614721c3b55db53ae99aeb 374 SUPERFAMILY SSF69279 180 345 2.21E-46 T 13-10-2018 CS348_18905 28d9052789614721c3b55db53ae99aeb 374 Pfam PF05954 Phage late control gene D protein (GPD) 29 321 6.8E-10 T 13-10-2018 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Gene3D G3DSA:3.40.50.720 92 257 1.2E-115 T 13-10-2018 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Gene3D G3DSA:3.30.1370.170 293 378 1.0E-36 T 13-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 47.253 T 13-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 281 3.0E-17 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 SUPERFAMILY SSF52283 4 109 1.68E-16 T 13-10-2018 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 2.7E-27 T 13-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 SUPERFAMILY SSF51735 91 246 9.65E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Gene3D G3DSA:3.40.50.720 3 277 1.2E-115 T 13-10-2018 CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_07785 8a703cbf1d909ca3b1145dd4a5a0051a 378 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 245 6.2E-30 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 Gene3D G3DSA:3.30.70.1530 20 89 5.2E-26 T 13-10-2018 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 4 190 1.7E-73 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 162 174 2.1E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 75 88 2.1E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 24 34 2.1E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 115 128 2.1E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 95 110 2.1E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_13030 98cf57fa609907f739815e5ca3e20488 249 Pfam PF01514 Secretory protein of YscJ/FliF family 6 187 8.2E-26 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF CS348_13030 98cf57fa609907f739815e5ca3e20488 249 Gene3D G3DSA:3.30.300.30 96 191 6.8E-31 T 13-10-2018 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 Pfam PF00710 Asparaginase, N-terminal 25 216 2.6E-63 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 PRINTS PR00139 Asparaginase/glutaminase family signature 282 300 8.3E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 8.3E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 8.3E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 Gene3D G3DSA:3.40.50.1170 23 234 4.5E-90 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 PIRSF PIRSF001220 21 348 4.2E-93 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 1 348 8.1E-167 T 13-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 SUPERFAMILY SSF53774 23 347 3.14E-109 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 SMART SM00870 25 342 3.7E-146 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 Gene3D G3DSA:3.40.50.40 235 348 4.7E-45 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 CS348_04425 a729e4cae34e5cd70420d5dd82df7f62 348 PIRSF PIRSF500176 22 348 4.8E-82 T 13-10-2018 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.3E-77 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 Pfam PF00210 Ferritin-like domain 8 143 1.2E-38 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 PIRSF PIRSF002560 1 157 1.0E-70 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 Gene3D G3DSA:1.20.1260.10 1 157 9.3E-73 T 13-10-2018 IPR012347 Ferritin-like CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 SUPERFAMILY SSF47240 1 154 1.98E-53 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_01990 baebd09479b3449b20f5b88b0d70f04c 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 155 2.3E-81 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CS348_11365 d175ebe6522161896dcf700f0fd47163 250 SMART SM01134 67 227 1.2E-59 T 13-10-2018 CS348_11365 d175ebe6522161896dcf700f0fd47163 250 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_11365 d175ebe6522161896dcf700f0fd47163 250 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 5.4E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_11365 d175ebe6522161896dcf700f0fd47163 250 Pfam PF00455 DeoR C terminal sensor domain 69 226 1.8E-45 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_11365 d175ebe6522161896dcf700f0fd47163 250 Gene3D G3DSA:1.10.10.10 1 54 2.3E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11365 d175ebe6522161896dcf700f0fd47163 250 SMART SM00420 4 56 2.5E-23 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_11365 d175ebe6522161896dcf700f0fd47163 250 SUPERFAMILY SSF46785 1 60 1.97E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_11365 d175ebe6522161896dcf700f0fd47163 250 SUPERFAMILY SSF100950 67 228 2.83E-28 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_11365 d175ebe6522161896dcf700f0fd47163 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 9.1E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_11365 d175ebe6522161896dcf700f0fd47163 250 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 9.1E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_04855 0fe7424374fcc77d479592c1d0977f35 168 Pfam PF07180 CaiF/GrlA transcriptional regulator 19 164 2.6E-88 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_04855 0fe7424374fcc77d479592c1d0977f35 168 Gene3D G3DSA:1.10.10.10 20 112 1.2E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04855 0fe7424374fcc77d479592c1d0977f35 168 ProDom PD081346 TRANSCRIPTIONAL CAIF OPERON REGULATOR CAI ACTIVATOR TRANSCRIPTION ACTIVATORY FIX REGULATION 36 99 9.0E-4 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_04045 635b0728913d17c23585b48c5b2ef872 375 Pfam PF07680 TQO small subunit DoxA 248 366 7.2E-6 T 13-10-2018 IPR011636 Thiosulphate:quinone oxidoreductase small subunit DoxA KEGG: 00920+1.8.5.2|MetaCyc: PWY-5303 CS348_04045 635b0728913d17c23585b48c5b2ef872 375 Pfam PF04173 TQO small subunit DoxD 37 184 1.1E-27 T 13-10-2018 IPR007301 TQO small subunit DoxD KEGG: 00920+1.8.5.2|MetaCyc: PWY-5303 CS348_04045 635b0728913d17c23585b48c5b2ef872 375 PIRSF PIRSF037390 19 373 1.3E-113 T 13-10-2018 IPR017192 Thiosulphate:quinone oxidoreductase, fused subunit DoxA/ DoxD CS348_06030 e7be85a2fcfa9076c64b0a846a6547f9 81 Pfam PF00462 Glutaredoxin 3 58 1.5E-12 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CS348_06030 e7be85a2fcfa9076c64b0a846a6547f9 81 SUPERFAMILY SSF52833 1 72 2.38E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_06030 e7be85a2fcfa9076c64b0a846a6547f9 81 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 4.5E-35 T 13-10-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 CS348_06030 e7be85a2fcfa9076c64b0a846a6547f9 81 Gene3D G3DSA:3.40.30.10 1 81 2.1E-26 T 13-10-2018 CS348_02385 159552e8dad3d3535d636e37df543d82 481 SUPERFAMILY SSF111283 20 480 1.31E-131 T 13-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 CS348_02385 159552e8dad3d3535d636e37df543d82 481 Gene3D G3DSA:3.30.2290.10 16 240 2.1E-18 T 13-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal CS348_02385 159552e8dad3d3535d636e37df543d82 481 PIRSF PIRSF004919 14 481 2.1E-153 T 13-10-2018 IPR025502 TldD CS348_02385 159552e8dad3d3535d636e37df543d82 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 5.3E-69 T 13-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 CS348_01985 8c26fe5884a86c9549792ec5b7763f6a 64 Gene3D G3DSA:1.10.10.1100 1 58 4.2E-21 T 13-10-2018 CS348_01985 8c26fe5884a86c9549792ec5b7763f6a 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 51 1.0E-14 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CS348_05120 384f024f116ec11ee355a2ab87203d86 591 TIGRFAM TIGR01089 fucI: L-fucose isomerase 5 590 0.0 T 13-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Pfam PF07882 L-fucose isomerase, second N-terminal domain 175 354 8.7E-81 T 13-10-2018 IPR012889 L-fucose isomerase, N-terminal-2 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Gene3D G3DSA:3.40.275.10 176 340 2.0E-81 T 13-10-2018 IPR038392 L-fucose isomerase, domain 2 superfamily KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Gene3D G3DSA:3.40.50.1070 1 175 2.8E-98 T 13-10-2018 IPR038391 L-fucose isomerase, domain 1 superfamily KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Pfam PF07881 L-fucose isomerase, first N-terminal domain 7 174 3.7E-84 T 13-10-2018 IPR012888 L-fucose isomerase, N-terminal-1 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Pfam PF02952 L-fucose isomerase, C-terminal domain 390 554 1.1E-54 T 13-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 SUPERFAMILY SSF53743 2 355 1.57E-151 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Gene3D G3DSA:3.20.14.10 341 591 6.4E-136 T 13-10-2018 IPR038393 L-fucose isomerase, domain 3 superfamily KEGG: 00051+5.3.1.25 CS348_05120 384f024f116ec11ee355a2ab87203d86 591 SUPERFAMILY SSF50443 356 590 9.68E-127 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal CS348_05120 384f024f116ec11ee355a2ab87203d86 591 Hamap MF_01254 L-fucose isomerase [fucI]. 3 591 70.819 T 13-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 CS348_10880 37e32a724539e4e2da7479510606089c 243 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 20 233 1.8E-72 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 SUPERFAMILY SSF81342 18 238 8.63E-38 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_10880 37e32a724539e4e2da7479510606089c 243 Pfam PF01292 Prokaryotic cytochrome b561 22 228 2.3E-31 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 62 86 6.8E-45 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 140 159 6.8E-45 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 220 233 6.8E-45 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 24 47 6.8E-45 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 189 211 6.8E-45 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_10880 37e32a724539e4e2da7479510606089c 243 Gene3D G3DSA:1.20.950.20 10 218 2.4E-84 T 13-10-2018 CS348_10880 37e32a724539e4e2da7479510606089c 243 ProSitePatterns PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2. 189 206 - T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_02015 af999efcbd0a2375432bf21906bd585c 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 5.6E-75 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02015 af999efcbd0a2375432bf21906bd585c 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 3.1E-64 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 CS348_02015 af999efcbd0a2375432bf21906bd585c 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 33.976 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02015 af999efcbd0a2375432bf21906bd585c 201 Gene3D G3DSA:3.40.1370.10 1 201 1.4E-68 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02015 af999efcbd0a2375432bf21906bd585c 201 SUPERFAMILY SSF52166 10 200 7.06E-73 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 TIGRFAM TIGR00836 amt: ammonium transporter 31 426 1.3E-137 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 PRINTS PR00342 Rhesus blood group protein signature 126 142 2.2E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 PRINTS PR00342 Rhesus blood group protein signature 252 274 2.2E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 PRINTS PR00342 Rhesus blood group protein signature 221 239 2.2E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 PRINTS PR00342 Rhesus blood group protein signature 307 325 2.2E-5 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 Gene3D G3DSA:1.10.3430.10 23 407 2.7E-150 T 13-10-2018 IPR029020 Ammonium/urea transporter CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 Pfam PF00909 Ammonium Transporter Family 33 426 1.2E-129 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 ProSitePatterns PS01219 Ammonium transporters signature. 182 207 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 CS348_18050 f994dd6a73c37ebf3a879082dfeeadc8 428 SUPERFAMILY SSF111352 27 407 5.23E-127 T 13-10-2018 CS348_05205 675ff600da81111445e981e66f1ca534 446 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 111 136 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CS348_05205 675ff600da81111445e981e66f1ca534 446 Gene3D G3DSA:3.30.390.10 9 413 1.2E-176 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_05205 675ff600da81111445e981e66f1ca534 446 SUPERFAMILY SSF51604 138 415 3.98E-84 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_05205 675ff600da81111445e981e66f1ca534 446 SUPERFAMILY SSF54826 7 136 9.48E-32 T 13-10-2018 CS348_05205 675ff600da81111445e981e66f1ca534 446 Gene3D G3DSA:3.20.20.120 138 399 1.2E-176 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_05205 675ff600da81111445e981e66f1ca534 446 Pfam PF13378 Enolase C-terminal domain-like 187 404 3.6E-40 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_05205 675ff600da81111445e981e66f1ca534 446 SMART SM00922 184 284 1.3E-15 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_05205 675ff600da81111445e981e66f1ca534 446 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 39 136 8.4E-8 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 Pfam PF00005 ABC transporter 27 169 3.9E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 SUPERFAMILY SSF52540 10 230 3.76E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 Gene3D G3DSA:3.40.50.300 275 485 1.6E-41 T 13-10-2018 CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 Pfam PF00005 ABC transporter 280 431 2.0E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 SMART SM00382 36 217 1.2E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 SMART SM00382 288 480 3.8E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 Gene3D G3DSA:3.40.50.300 6 237 8.6E-58 T 13-10-2018 CS348_23215 5dbafd466bcee015555b760fcdecb43f 511 SUPERFAMILY SSF52540 281 481 5.42E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11520 33bdb6227fe1bf50d48b8a110ed3c2f3 353 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 55 341 4.3E-148 T 13-10-2018 IPR006507 Uncharacterised protein family UPF0283 CS348_11520 33bdb6227fe1bf50d48b8a110ed3c2f3 353 Pfam PF05128 Domain of unknown function (DUF697) 183 341 7.0E-54 T 13-10-2018 IPR021147 Protein of unknown function DUF697 CS348_11520 33bdb6227fe1bf50d48b8a110ed3c2f3 353 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 347 39.064 T 13-10-2018 IPR006507 Uncharacterised protein family UPF0283 CS348_10760 ba6f7255a902ecffd782d68649548179 219 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 209 1.5E-51 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 CS348_10760 ba6f7255a902ecffd782d68649548179 219 Gene3D G3DSA:3.90.850.10 1 219 4.2E-75 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_10760 ba6f7255a902ecffd782d68649548179 219 SUPERFAMILY SSF56529 11 211 8.11E-68 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_13560 8a66a526ed2c96326fc60417a021de26 175 Pfam PF09684 Phage tail protein (Tail_P2_I) 6 141 8.6E-49 T 13-10-2018 IPR006521 Tail protein I CS348_13560 8a66a526ed2c96326fc60417a021de26 175 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 6 142 7.0E-54 T 13-10-2018 IPR006521 Tail protein I CS348_10745 8ec3833b22a936d1cddb187828f1e928 270 Gene3D G3DSA:3.40.50.300 1 260 1.1E-76 T 13-10-2018 CS348_10745 8ec3833b22a936d1cddb187828f1e928 270 SUPERFAMILY SSF52540 1 268 8.22E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_10745 8ec3833b22a936d1cddb187828f1e928 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 227 5.1E-20 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CS348_10745 8ec3833b22a936d1cddb187828f1e928 270 PIRSF PIRSF003092 1 270 3.3E-99 T 13-10-2018 IPR025501 ATP binding protein MinD CS348_10745 8ec3833b22a936d1cddb187828f1e928 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 3.2E-110 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 CS348_12935 44ad5b142b13301fc0aacdff4d7a5f7a 401 Pfam PF07690 Major Facilitator Superfamily 14 341 5.1E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12935 44ad5b142b13301fc0aacdff4d7a5f7a 401 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 379 3.0E-133 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 CS348_12935 44ad5b142b13301fc0aacdff4d7a5f7a 401 SUPERFAMILY SSF103473 7 375 4.19E-55 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12935 44ad5b142b13301fc0aacdff4d7a5f7a 401 Gene3D G3DSA:1.20.1720.10 7 378 5.3E-78 T 13-10-2018 CS348_15200 fbc716c600c6af20724a8f11b07542d1 180 Pfam PF07126 Cell-division protein ZapC 3 167 4.2E-67 T 13-10-2018 IPR009809 Cell division protein ZapC CS348_15200 fbc716c600c6af20724a8f11b07542d1 180 PIRSF PIRSF010252 1 179 6.1E-64 T 13-10-2018 IPR009809 Cell division protein ZapC CS348_15200 fbc716c600c6af20724a8f11b07542d1 180 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 175 39.638 T 13-10-2018 IPR009809 Cell division protein ZapC CS348_02765 cee263b951d34e7dbad52f2539381021 282 Gene3D G3DSA:3.20.20.20 1 282 1.4E-113 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_02765 cee263b951d34e7dbad52f2539381021 282 SUPERFAMILY SSF51717 6 274 7.98E-105 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_02765 cee263b951d34e7dbad52f2539381021 282 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_02765 cee263b951d34e7dbad52f2539381021 282 Pfam PF00809 Pterin binding enzyme 18 257 1.6E-89 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_02765 cee263b951d34e7dbad52f2539381021 282 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CS348_02765 cee263b951d34e7dbad52f2539381021 282 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 271 3.4E-102 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 CS348_23825 c51c2c41f7d1a678090593821f3c9835 328 Pfam PF01636 Phosphotransferase enzyme family 32 260 5.2E-44 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CS348_23825 c51c2c41f7d1a678090593821f3c9835 328 Gene3D G3DSA:1.10.510.10 60 258 4.0E-123 T 13-10-2018 CS348_23825 c51c2c41f7d1a678090593821f3c9835 328 Gene3D G3DSA:3.30.200.70 13 108 4.0E-123 T 13-10-2018 CS348_23825 c51c2c41f7d1a678090593821f3c9835 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 44.997 T 13-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 CS348_23825 c51c2c41f7d1a678090593821f3c9835 328 SUPERFAMILY SSF56112 6 327 1.38E-90 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_23825 c51c2c41f7d1a678090593821f3c9835 328 Gene3D G3DSA:1.20.1270.170 149 307 4.0E-123 T 13-10-2018 CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Hamap MF_01154 Curved DNA-binding protein [cbpA]. 1 306 54.652 T 13-10-2018 IPR023859 DNA-binding protein, curved-DNA CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 SMART SM00271 4 61 3.0E-26 T 13-10-2018 IPR001623 DnaJ domain CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Gene3D G3DSA:1.10.287.110 2 114 1.2E-31 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Gene3D G3DSA:2.60.260.20 199 276 1.9E-28 T 13-10-2018 CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Pfam PF01556 DnaJ C terminal domain 120 276 8.1E-33 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 SUPERFAMILY SSF46565 1 105 3.14E-27 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Gene3D G3DSA:1.20.5.460 277 306 3.1E-19 T 13-10-2018 CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 SUPERFAMILY SSF49493 114 205 7.46E-15 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 PRINTS PR00625 DnaJ domain signature 41 61 2.6E-17 T 13-10-2018 IPR001623 DnaJ domain CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 PRINTS PR00625 DnaJ domain signature 25 40 2.6E-17 T 13-10-2018 IPR001623 DnaJ domain CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 PRINTS PR00625 DnaJ domain signature 7 25 2.6E-17 T 13-10-2018 IPR001623 DnaJ domain CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 PRINTS PR00625 DnaJ domain signature 61 80 2.6E-17 T 13-10-2018 IPR001623 DnaJ domain CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 13-10-2018 IPR018253 DnaJ domain, conserved site CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 SUPERFAMILY SSF49493 205 285 1.57E-16 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Pfam PF00226 DnaJ domain 5 66 1.9E-23 T 13-10-2018 IPR001623 DnaJ domain CS348_14925 c2875b4ec700365d632c9dd4fc406596 306 Gene3D G3DSA:2.60.260.20 115 198 1.5E-22 T 13-10-2018 CS348_10435 e91c6042a13339a15c419489810593b1 445 SUPERFAMILY SSF88874 234 420 2.49E-26 T 13-10-2018 CS348_10435 e91c6042a13339a15c419489810593b1 445 Pfam PF07484 Phage Tail Collar Domain 246 291 2.3E-7 T 13-10-2018 IPR011083 Phage tail collar domain CS348_10435 e91c6042a13339a15c419489810593b1 445 Gene3D G3DSA:3.90.1340.10 240 293 1.8E-18 T 13-10-2018 IPR037053 Phage tail collar domain superfamily CS348_08195 bf951820dbc7cede91e695ff208ae128 429 SUPERFAMILY SSF103473 11 416 2.88E-70 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_08195 bf951820dbc7cede91e695ff208ae128 429 Gene3D G3DSA:1.20.1250.20 229 421 1.5E-18 T 13-10-2018 CS348_08195 bf951820dbc7cede91e695ff208ae128 429 Gene3D G3DSA:1.20.1250.20 6 214 4.7E-44 T 13-10-2018 CS348_08195 bf951820dbc7cede91e695ff208ae128 429 Pfam PF07690 Major Facilitator Superfamily 23 381 2.9E-43 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_14805 b5c080580c482084595b5ae0fa9ced3f 368 SUPERFAMILY SSF55347 126 266 3.76E-23 T 13-10-2018 CS348_14805 b5c080580c482084595b5ae0fa9ced3f 368 Gene3D G3DSA:3.40.50.720 2 130 1.1E-33 T 13-10-2018 CS348_14805 b5c080580c482084595b5ae0fa9ced3f 368 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 131 241 7.6E-16 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 CS348_14805 b5c080580c482084595b5ae0fa9ced3f 368 Gene3D G3DSA:3.30.360.10 131 363 2.8E-27 T 13-10-2018 CS348_14805 b5c080580c482084595b5ae0fa9ced3f 368 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 119 9.1E-28 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_14805 b5c080580c482084595b5ae0fa9ced3f 368 SUPERFAMILY SSF51735 4 147 1.39E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02545 ae4bcceffef8d706aa25e029f13b7154 291 Pfam PF00480 ROK family 4 287 8.7E-83 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_02545 ae4bcceffef8d706aa25e029f13b7154 291 ProSitePatterns PS01125 ROK family signature. 129 156 - T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_02545 ae4bcceffef8d706aa25e029f13b7154 291 Gene3D G3DSA:3.30.420.40 5 283 1.3E-94 T 13-10-2018 CS348_02545 ae4bcceffef8d706aa25e029f13b7154 291 Hamap MF_01234 N-acetylmannosamine kinase [nanK]. 1 290 45.599 T 13-10-2018 IPR023945 N-acetylmannosamine kinase, bacterial GO:0005524|GO:0008270|GO:0009384|GO:0019262 KEGG: 00520+2.7.1.60|MetaCyc: PWY-6138 CS348_02545 ae4bcceffef8d706aa25e029f13b7154 291 SUPERFAMILY SSF53067 1 287 8.34E-54 T 13-10-2018 CS348_02545 ae4bcceffef8d706aa25e029f13b7154 291 Gene3D G3DSA:3.30.420.40 119 270 1.3E-94 T 13-10-2018 CS348_15010 5badf8878322f309206b3b578c948a9d 136 ProSitePatterns PS00768 Transthyretin signature 1. 31 46 - T 13-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 SUPERFAMILY SSF49472 25 136 1.7E-41 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 Pfam PF00576 HIUase/Transthyretin family 28 135 4.2E-38 T 13-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 27 136 1.4E-44 T 13-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 CS348_15010 5badf8878322f309206b3b578c948a9d 136 SMART SM00095 23 135 0.0064 T 13-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 PRINTS PR00189 Transthyretin signature 27 47 8.0E-14 T 13-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 PRINTS PR00189 Transthyretin signature 59 84 8.0E-14 T 13-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 PRINTS PR00189 Transthyretin signature 114 136 8.0E-14 T 13-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 Gene3D G3DSA:2.60.40.180 23 136 1.6E-45 T 13-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_15010 5badf8878322f309206b3b578c948a9d 136 ProSitePatterns PS00769 Transthyretin signature 2. 119 131 - T 13-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 577 5.7E-215 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 SMART SM00836 460 577 2.1E-35 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Gene3D G3DSA:3.40.50.620 108 453 2.9E-110 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 577 29.152 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Pfam PF05746 DALR anticodon binding domain 460 577 5.6E-34 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 SUPERFAMILY SSF47323 454 577 2.94E-34 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 9.0E-26 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 9.0E-26 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 9.0E-26 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 9.0E-26 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 SMART SM01016 5 87 4.6E-29 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 1.1E-21 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 SUPERFAMILY SSF52374 111 454 1.02E-96 T 13-10-2018 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Gene3D G3DSA:1.10.730.10 454 577 3.1E-31 T 13-10-2018 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Gene3D G3DSA:3.30.1360.70 1 106 7.4E-38 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 Pfam PF00750 tRNA synthetases class I (R) 95 446 1.2E-175 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 CS348_10190 39fe483f1be1bdc096b55e195aa83593 577 SUPERFAMILY SSF55190 2 100 4.45E-23 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CS348_03125 69c2221809981f88b16668b7cc5b2297 378 Gene3D G3DSA:3.40.50.150 8 182 1.5E-58 T 13-10-2018 CS348_03125 69c2221809981f88b16668b7cc5b2297 378 Gene3D G3DSA:3.40.50.150 183 377 2.9E-59 T 13-10-2018 CS348_03125 69c2221809981f88b16668b7cc5b2297 378 Pfam PF05175 Methyltransferase small domain 199 370 3.5E-57 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_03125 69c2221809981f88b16668b7cc5b2297 378 PIRSF PIRSF037565 1 374 1.2E-160 T 13-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 CS348_03125 69c2221809981f88b16668b7cc5b2297 378 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 302 308 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_03125 69c2221809981f88b16668b7cc5b2297 378 SUPERFAMILY SSF53335 191 373 5.53E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_03125 69c2221809981f88b16668b7cc5b2297 378 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 373 49.129 T 13-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 CS348_13235 6ec4b431b082cecfc2613b8008c79af6 122 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 17 122 2.1E-47 T 13-10-2018 IPR011298 FeS assembly scaffold SufA GO:0097428 CS348_13235 6ec4b431b082cecfc2613b8008c79af6 122 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 103 120 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 CS348_13235 6ec4b431b082cecfc2613b8008c79af6 122 SUPERFAMILY SSF89360 18 111 4.71E-27 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_13235 6ec4b431b082cecfc2613b8008c79af6 122 Pfam PF01521 Iron-sulphur cluster biosynthesis 18 118 1.7E-18 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CS348_13235 6ec4b431b082cecfc2613b8008c79af6 122 Gene3D G3DSA:2.60.300.12 17 122 4.2E-36 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_13235 6ec4b431b082cecfc2613b8008c79af6 122 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 18 121 1.1E-32 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 CS348_02210 ffded89d55cbf62ba1a349b61140c2de 85 SUPERFAMILY SSF160272 2 85 6.8E-31 T 13-10-2018 IPR036692 Shew3726-like superfamily CS348_02210 ffded89d55cbf62ba1a349b61140c2de 85 Pfam PF07369 Protein of unknown function (DUF1488) 5 84 5.6E-29 T 13-10-2018 IPR009962 Protein of unknown function DUF1488 CS348_02210 ffded89d55cbf62ba1a349b61140c2de 85 Gene3D G3DSA:3.30.160.140 1 85 4.7E-28 T 13-10-2018 IPR036692 Shew3726-like superfamily CS348_23770 74f02d480372da739a69e493bf9f8375 349 SUPERFAMILY SSF55785 11 100 6.6E-5 T 13-10-2018 IPR035965 PAS domain superfamily CS348_23770 74f02d480372da739a69e493bf9f8375 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 1.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_23770 74f02d480372da739a69e493bf9f8375 349 Pfam PF00989 PAS fold 11 96 7.5E-6 T 13-10-2018 IPR013767 PAS fold GO:0006355 CS348_23770 74f02d480372da739a69e493bf9f8375 349 Gene3D G3DSA:3.30.450.20 9 112 1.8E-16 T 13-10-2018 CS348_23770 74f02d480372da739a69e493bf9f8375 349 SMART SM00388 129 194 4.9E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_23770 74f02d480372da739a69e493bf9f8375 349 Gene3D G3DSA:1.10.287.130 116 189 4.5E-14 T 13-10-2018 CS348_23770 74f02d480372da739a69e493bf9f8375 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23770 74f02d480372da739a69e493bf9f8375 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23770 74f02d480372da739a69e493bf9f8375 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 1.4E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_23770 74f02d480372da739a69e493bf9f8375 349 SUPERFAMILY SSF47384 121 186 3.14E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_23770 74f02d480372da739a69e493bf9f8375 349 SMART SM00387 233 349 9.7E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_23770 74f02d480372da739a69e493bf9f8375 349 SMART SM00091 7 75 1.6E-7 T 13-10-2018 IPR000014 PAS domain CS348_23770 74f02d480372da739a69e493bf9f8375 349 SUPERFAMILY SSF55874 198 346 6.29E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_23770 74f02d480372da739a69e493bf9f8375 349 Gene3D G3DSA:3.30.565.10 192 348 1.2E-45 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_23770 74f02d480372da739a69e493bf9f8375 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 186 3.0E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 Hamap MF_01413 Glutathione-regulated potassium-efflux system protein KefC [kefC]. 1 607 55.754 T 13-10-2018 IPR023941 Glutathione-regulated potassium-efflux system protein KefC GO:0005887|GO:0006813|GO:0015503|GO:0015643|GO:0019899|GO:0051595 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 Pfam PF00999 Sodium/hydrogen exchanger family 11 374 4.6E-62 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 PRINTS PR00335 TrkA potassium uptake protein signature 458 468 5.0E-8 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 PRINTS PR00335 TrkA potassium uptake protein signature 418 432 5.0E-8 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 PRINTS PR00335 TrkA potassium uptake protein signature 401 415 5.0E-8 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 PRINTS PR00335 TrkA potassium uptake protein signature 447 457 5.0E-8 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 285 5.6E-92 T 13-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 Pfam PF02254 TrkA-N domain 402 511 3.0E-25 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 Gene3D G3DSA:3.40.50.720 398 561 6.7E-41 T 13-10-2018 CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 Gene3D G3DSA:1.20.1530.20 1 387 9.7E-83 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_19910 d5e758eb71d4c076a5234e460ec9d431 620 SUPERFAMILY SSF51735 401 527 2.51E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_05465 677851596f721a5d6bf3702c6c5def78 498 Pfam PF02447 GntP family permease 7 458 2.0E-142 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_05465 677851596f721a5d6bf3702c6c5def78 498 PIRSF PIRSF002746 2 461 2.8E-148 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_05465 677851596f721a5d6bf3702c6c5def78 498 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 8 459 1.1E-97 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_05110 18030deaa5c1afe93d76d6017c7fcfc1 140 SUPERFAMILY SSF102546 1 139 6.41E-39 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CS348_05110 18030deaa5c1afe93d76d6017c7fcfc1 140 Gene3D G3DSA:3.40.1650.10 1 140 1.3E-45 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CS348_05110 18030deaa5c1afe93d76d6017c7fcfc1 140 Pfam PF05025 RbsD / FucU transport protein family 3 139 1.6E-34 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CS348_05110 18030deaa5c1afe93d76d6017c7fcfc1 140 Hamap MF_01662 L-fucose mutarotase [fucU]. 1 140 46.387 T 13-10-2018 IPR023751 L-fucose mutarotase GO:0016854|GO:0042354|GO:0042806 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 13-10-2018 IPR000241 Putative RNA methylase domain CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 702 32.791 T 13-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 SMART SM00981 56 154 1.1E-19 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Gene3D G3DSA:3.40.50.150 484 702 2.0E-78 T 13-10-2018 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Gene3D G3DSA:3.40.50.150 169 372 3.9E-145 T 13-10-2018 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 3.3E-64 T 13-10-2018 IPR000241 Putative RNA methylase domain CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 SUPERFAMILY SSF53335 396 698 3.12E-71 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Gene3D G3DSA:3.30.2130.30 5 255 3.9E-145 T 13-10-2018 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 303 315 3.0E-5 T 13-10-2018 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 193 207 3.0E-5 T 13-10-2018 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 476 658 2.1E-21 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Gene3D G3DSA:3.30.750.80 392 483 2.4E-38 T 13-10-2018 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 SUPERFAMILY SSF53335 148 373 8.61E-41 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 PIRSF PIRSF037618 1 702 5.6E-296 T 13-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 CS348_15190 1b4a0b5e4bd9bfd33584e0e3f43a8f8e 702 Pfam PF02926 THUMP domain 20 153 1.0E-20 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CS348_09375 b877b165686b57bd93da668f9b600e7c 300 Pfam PF00288 GHMP kinases N terminal domain 85 132 2.0E-8 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CS348_09375 b877b165686b57bd93da668f9b600e7c 300 SUPERFAMILY SSF54211 15 165 1.14E-20 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_09375 b877b165686b57bd93da668f9b600e7c 300 Gene3D G3DSA:3.30.230.10 12 152 7.4E-13 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_09375 b877b165686b57bd93da668f9b600e7c 300 PIRSF PIRSF033887 9 292 3.4E-65 T 13-10-2018 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 CS348_08390 0c80645f2d3f32cc3672b45d8472c323 200 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 22 193 1.9E-78 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal CS348_08390 0c80645f2d3f32cc3672b45d8472c323 200 SUPERFAMILY SSF48695 17 197 1.36E-65 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_08390 0c80645f2d3f32cc3672b45d8472c323 200 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 11 194 9.8E-105 T 13-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 CS348_08390 0c80645f2d3f32cc3672b45d8472c323 200 PIRSF PIRSF000013 1 200 9.0E-107 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 CS348_08390 0c80645f2d3f32cc3672b45d8472c323 200 Gene3D G3DSA:1.10.3820.10 19 197 7.9E-41 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SUPERFAMILY SSF50998 160 792 6.93E-158 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Gene3D G3DSA:2.140.10.10 567 793 2.3E-39 T 13-10-2018 CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 404 425 - T 13-10-2018 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Pfam PF01011 PQQ enzyme repeat 442 468 1.0E-6 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Pfam PF01011 PQQ enzyme repeat 721 758 4.0E-6 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Pfam PF01011 PQQ enzyme repeat 289 320 1.8E-5 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Pfam PF01011 PQQ enzyme repeat 362 387 1.3E-4 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Pfam PF01011 PQQ enzyme repeat 664 696 4.0E-7 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Pfam PF01011 PQQ enzyme repeat 225 261 1.2E-8 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 15 792 0.0 T 13-10-2018 IPR017511 PQQ-dependent membrane bound dehydrogenase GO:0016021|GO:0016614|GO:0048038|GO:0055114 CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SMART SM00564 479 512 620.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SMART SM00564 339 380 0.0045 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SMART SM00564 282 314 69.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SMART SM00564 715 748 0.04 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SMART SM00564 220 251 3.2E-6 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 SMART SM00564 401 458 310.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_19475 116be9387f2ba1c1280f43d846db2b24 796 Gene3D G3DSA:2.140.10.10 159 566 3.2E-118 T 13-10-2018 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 SUPERFAMILY SSF52833 106 197 1.76E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 Gene3D G3DSA:3.50.50.60 213 508 8.9E-120 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 6.0E-38 T 13-10-2018 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 6.0E-38 T 13-10-2018 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 468 490 6.0E-38 T 13-10-2018 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 215 234 6.0E-38 T 13-10-2018 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 6.0E-38 T 13-10-2018 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 517 4.4E-239 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PIRSF PIRSF000238 1 521 1.4E-261 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 Pfam PF13192 Thioredoxin domain 126 193 6.0E-9 T 13-10-2018 IPR012336 Thioredoxin-like fold CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 345 365 - T 13-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 478 496 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 246 261 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 266 276 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 214 236 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 2.1E-66 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 213 503 1.3E-42 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 Gene3D G3DSA:3.50.50.60 327 450 8.9E-120 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 SUPERFAMILY SSF52833 1 101 6.04E-29 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 SUPERFAMILY SSF51905 206 514 5.56E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_17195 5c417877d0d2f9067293f03daaa8d6e8 521 Gene3D G3DSA:3.40.30.80 1 200 6.8E-71 T 13-10-2018 CS348_13995 daaa32d968080aac80de3d9c6d25fa6d 60 Pfam PF08956 Domain of unknown function (DUF1869) 3 60 6.0E-32 T 13-10-2018 IPR015051 Protein YoaG CS348_13995 daaa32d968080aac80de3d9c6d25fa6d 60 Gene3D G3DSA:3.30.160.220 1 60 2.7E-36 T 13-10-2018 IPR036489 YoaG superfamily CS348_13995 daaa32d968080aac80de3d9c6d25fa6d 60 SUPERFAMILY SSF103063 1 60 4.18E-32 T 13-10-2018 IPR036489 YoaG superfamily CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 SUPERFAMILY SSF103025 3 277 4.26E-89 T 13-10-2018 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 PIRSF PIRSF006487 1 363 1.0E-78 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 359 2.3E-165 T 13-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 44.387 T 13-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Gene3D G3DSA:3.30.1360.120 6 231 7.8E-89 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 SUPERFAMILY SSF101790 271 361 1.8E-26 T 13-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Gene3D G3DSA:3.30.70.1400 51 138 7.8E-89 T 13-10-2018 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Gene3D G3DSA:4.10.1250.10 232 276 1.3E-27 T 13-10-2018 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 262 353 3.0E-18 T 13-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Gene3D G3DSA:2.40.30.110 277 364 1.3E-37 T 13-10-2018 CS348_04690 22065850ed0092c8041f06f7fd9f0507 364 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 3.2E-82 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain CS348_22565 19c0321fc562c1760fb549daacd28235 491 SUPERFAMILY SSF103473 6 476 4.32E-63 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_22565 19c0321fc562c1760fb549daacd28235 491 ProSitePatterns PS00216 Sugar transport proteins signature 1. 332 349 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_22565 19c0321fc562c1760fb549daacd28235 491 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_22565 19c0321fc562c1760fb549daacd28235 491 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 2 474 2.6E-159 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_22565 19c0321fc562c1760fb549daacd28235 491 Gene3D G3DSA:1.20.1250.20 254 490 1.5E-79 T 13-10-2018 CS348_22565 19c0321fc562c1760fb549daacd28235 491 Pfam PF00083 Sugar (and other) transporter 14 478 9.0E-147 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_22565 19c0321fc562c1760fb549daacd28235 491 PRINTS PR00171 Sugar transporter signature 21 31 3.1E-28 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_22565 19c0321fc562c1760fb549daacd28235 491 PRINTS PR00171 Sugar transporter signature 396 408 3.1E-28 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_22565 19c0321fc562c1760fb549daacd28235 491 PRINTS PR00171 Sugar transporter signature 373 394 3.1E-28 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_22565 19c0321fc562c1760fb549daacd28235 491 PRINTS PR00171 Sugar transporter signature 288 298 3.1E-28 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_22565 19c0321fc562c1760fb549daacd28235 491 PRINTS PR00171 Sugar transporter signature 130 149 3.1E-28 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_22565 19c0321fc562c1760fb549daacd28235 491 Gene3D G3DSA:1.20.1250.20 1 253 1.4E-83 T 13-10-2018 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 Pfam PF00384 Molybdopterin oxidoreductase 108 831 2.9E-167 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 Gene3D G3DSA:4.10.1200.10 1 28 2.4E-18 T 13-10-2018 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 776 793 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 SMART SM00926 43 105 6.6E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 Pfam PF01568 Molydopterin dinucleotide binding domain 1087 1199 9.8E-21 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1234 0.0 T 13-10-2018 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 SUPERFAMILY SSF50692 1082 1235 1.63E-46 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 4 40 7.7E-16 T 13-10-2018 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 SUPERFAMILY SSF53706 5 1070 0.0 T 13-10-2018 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_12105 49106342c2b3658c3405f1ec60e49ada 1246 Gene3D G3DSA:3.40.50.12440 44 1244 0.0 T 13-10-2018 CS348_00370 0cb1cce7ebe9d9387a17aaae82fa14d0 313 Pfam PF04754 Putative transposase, YhgA-like 8 209 6.7E-89 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_00370 0cb1cce7ebe9d9387a17aaae82fa14d0 313 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 309 1.5E-59 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Pfam PF14520 Helix-hairpin-helix domain 558 609 5.4E-8 T 13-10-2018 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Gene3D G3DSA:3.40.1440.10 5 102 7.9E-32 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 SMART SM00278 556 575 1.1 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 SMART SM00278 588 607 2.9 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 9 589 1.9E-236 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 SUPERFAMILY SSF46600 190 243 1.57E-13 T 13-10-2018 IPR036876 UVR domain superfamily CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Pfam PF02151 UvrB/uvrC motif 205 237 4.5E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 2.0E-11 T 13-10-2018 IPR000305 GIY-YIG endonuclease CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 SMART SM00465 17 98 3.1E-23 T 13-10-2018 IPR000305 GIY-YIG endonuclease CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 386 542 1.4E-45 T 13-10-2018 IPR001162 UvrC family homology region CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 SUPERFAMILY SSF47781 521 606 5.4E-17 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Gene3D G3DSA:1.10.150.20 555 610 2.9E-26 T 13-10-2018 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 30.113 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Gene3D G3DSA:3.30.420.340 377 552 3.6E-45 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 SUPERFAMILY SSF82771 17 100 1.44E-24 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CS348_10005 81a0d3ed64e5716f47bbee55cf5cdc90 610 Gene3D G3DSA:4.10.860.10 199 241 1.6E-5 T 13-10-2018 CS348_09940 f731e85b46e66b93d809128ad0946f85 467 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 106 7.9E-19 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 CS348_09940 f731e85b46e66b93d809128ad0946f85 467 Pfam PF07196 Flagellin hook IN motif 130 186 6.5E-10 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 CS348_09940 f731e85b46e66b93d809128ad0946f85 467 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 224 452 1.1E-60 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 CS348_13520 a193a9d2fae69d6e1618e3b2dcdd2c99 125 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 14 124 8.3E-17 T 13-10-2018 IPR006481 Bacteriophage lambda, GpS, holin CS348_13520 a193a9d2fae69d6e1618e3b2dcdd2c99 125 Pfam PF05106 Phage holin family (Lysis protein S) 17 112 7.7E-19 T 13-10-2018 IPR006481 Bacteriophage lambda, GpS, holin CS348_18830 2420c312998c0754f8a318562097b8d3 151 SMART SM00344 5 111 9.9E-32 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CS348_18830 2420c312998c0754f8a318562097b8d3 151 Gene3D G3DSA:1.10.10.10 6 57 3.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18830 2420c312998c0754f8a318562097b8d3 151 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 51 7.5E-10 T 13-10-2018 CS348_18830 2420c312998c0754f8a318562097b8d3 151 SUPERFAMILY SSF54909 65 151 6.3E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_18830 2420c312998c0754f8a318562097b8d3 151 Gene3D G3DSA:3.30.70.920 58 151 3.9E-20 T 13-10-2018 CS348_18830 2420c312998c0754f8a318562097b8d3 151 SUPERFAMILY SSF46785 4 64 1.8E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_18830 2420c312998c0754f8a318562097b8d3 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 2.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_18830 2420c312998c0754f8a318562097b8d3 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 2.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_18830 2420c312998c0754f8a318562097b8d3 151 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 2.5E-11 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_18830 2420c312998c0754f8a318562097b8d3 151 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CS348_18830 2420c312998c0754f8a318562097b8d3 151 Pfam PF01037 Lrp/AsnC ligand binding domain 72 142 1.1E-15 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CS348_03345 19f0a423b746f59df02593d191c38e4e 104 Gene3D G3DSA:3.30.70.100 1 104 6.8E-33 T 13-10-2018 CS348_03345 19f0a423b746f59df02593d191c38e4e 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 86 2.1E-25 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CS348_03345 19f0a423b746f59df02593d191c38e4e 104 SUPERFAMILY SSF54909 1 99 4.47E-28 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_04650 6b25925f12a1aea910e71201e8e5f75b 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 1.2E-53 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CS348_04650 6b25925f12a1aea910e71201e8e5f75b 198 PIRSF PIRSF006806 6 195 5.6E-37 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CS348_04650 6b25925f12a1aea910e71201e8e5f75b 198 Gene3D G3DSA:3.40.50.10420 3 197 1.0E-58 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CS348_04650 6b25925f12a1aea910e71201e8e5f75b 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 192 1.1E-46 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CS348_04650 6b25925f12a1aea910e71201e8e5f75b 198 SUPERFAMILY SSF100950 10 198 3.91E-58 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_23535 df926c8166913013af596a9a1a336d9d 344 Hamap MF_01532 L-rhamnose-proton symporter [rhaT]. 1 344 48.779 T 13-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 CS348_23535 df926c8166913013af596a9a1a336d9d 344 Pfam PF06379 L-rhamnose-proton symport protein (RhaT) 1 344 2.2E-227 T 13-10-2018 IPR004673 L-rhamnose-proton symport, RhaT GO:0008645|GO:0015153|GO:0016021 CS348_23535 df926c8166913013af596a9a1a336d9d 344 TIGRFAM TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein 7 342 8.8E-114 T 13-10-2018 CS348_20105 ade1bea2b910c4197d5b4b26a5842f1e 306 Hamap MF_01432 Non-specific ribonucleoside hydrolase RihC [rihC]. 3 306 67.572 T 13-10-2018 IPR022976 Non-specific ribonucleoside hydrolase RihC GO:0016798 CS348_20105 ade1bea2b910c4197d5b4b26a5842f1e 306 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 6 295 1.9E-81 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CS348_20105 ade1bea2b910c4197d5b4b26a5842f1e 306 SUPERFAMILY SSF53590 6 301 7.33E-95 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CS348_20105 ade1bea2b910c4197d5b4b26a5842f1e 306 Gene3D G3DSA:3.90.245.10 1 304 5.0E-102 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CS348_10830 37d3f1af8525fcaa9aa5fb5a3c98301a 244 Gene3D G3DSA:2.30.110.10 6 112 2.1E-5 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CS348_10830 37d3f1af8525fcaa9aa5fb5a3c98301a 244 Gene3D G3DSA:2.40.10.220 114 241 1.7E-32 T 13-10-2018 CS348_10830 37d3f1af8525fcaa9aa5fb5a3c98301a 244 Pfam PF07238 PilZ domain 112 230 2.7E-10 T 13-10-2018 IPR009875 PilZ domain GO:0035438 CS348_10830 37d3f1af8525fcaa9aa5fb5a3c98301a 244 Pfam PF07317 Flagellar regulator YcgR 8 109 1.4E-30 T 13-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal CS348_10830 37d3f1af8525fcaa9aa5fb5a3c98301a 244 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 3 239 29.905 T 13-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 CS348_18750 d3b63843fa8afd2c83091cdd3ce14d41 152 SUPERFAMILY SSF53271 4 144 5.77E-32 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_18750 d3b63843fa8afd2c83091cdd3ce14d41 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.228 T 13-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 CS348_18750 d3b63843fa8afd2c83091cdd3ce14d41 152 Pfam PF00156 Phosphoribosyl transferase domain 11 144 1.8E-15 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CS348_18750 d3b63843fa8afd2c83091cdd3ce14d41 152 Gene3D G3DSA:3.40.50.2020 1 152 2.0E-43 T 13-10-2018 CS348_11240 f1da985a5461e090d8c65a081068036c 520 SUPERFAMILY SSF56322 8 512 1.13E-163 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_11240 f1da985a5461e090d8c65a081068036c 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 6.8E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11240 f1da985a5461e090d8c65a081068036c 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 6.8E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11240 f1da985a5461e090d8c65a081068036c 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 6.8E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11240 f1da985a5461e090d8c65a081068036c 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 6.8E-24 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11240 f1da985a5461e090d8c65a081068036c 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 515 7.4E-265 T 13-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11240 f1da985a5461e090d8c65a081068036c 520 PIRSF PIRSF001373 1 520 1.8E-246 T 13-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_11240 f1da985a5461e090d8c65a081068036c 520 Gene3D G3DSA:3.60.120.10 1 520 5.0E-211 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_11240 f1da985a5461e090d8c65a081068036c 520 Pfam PF00425 chorismate binding enzyme 242 502 5.5E-83 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CS348_11240 f1da985a5461e090d8c65a081068036c 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 191 2.0E-11 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_20045 31c1039a1fa3a566151eb522c8dc4d3b 302 Gene3D G3DSA:1.10.4200.10 182 294 1.5E-7 T 13-10-2018 CS348_20045 31c1039a1fa3a566151eb522c8dc4d3b 302 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 21 293 4.4E-110 T 13-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_20045 31c1039a1fa3a566151eb522c8dc4d3b 302 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 25 291 2.4E-77 T 13-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_20045 31c1039a1fa3a566151eb522c8dc4d3b 302 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 1 302 168.036 T 13-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_17480 547f7b420b499602dd80361ddc8976f2 109 Pfam PF05939 Phage minor tail protein 2 108 8.5E-40 T 13-10-2018 IPR010265 Bacteriophage lambda, GpM, minor tail CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.546 T 13-10-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 SUPERFAMILY SSF46894 146 207 2.24E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 Pfam PF00072 Response regulator receiver domain 6 120 1.2E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 Gene3D G3DSA:3.40.50.2300 1 147 2.2E-29 T 13-10-2018 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 4.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 4.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 4.0E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 Gene3D G3DSA:1.10.10.10 148 207 2.7E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 SUPERFAMILY SSF52172 3 135 5.27E-21 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 SMART SM00421 148 205 4.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 SMART SM00448 4 120 3.8E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08310 66260ac03a5f7d69b09dabadc70a7d44 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.1E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00800 012923bd0e7ab72677ab788679036499 383 SUPERFAMILY SSF56796 5 382 9.81E-133 T 13-10-2018 CS348_00800 012923bd0e7ab72677ab788679036499 383 Gene3D G3DSA:3.40.50.1970 1 184 7.8E-56 T 13-10-2018 CS348_00800 012923bd0e7ab72677ab788679036499 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_00800 012923bd0e7ab72677ab788679036499 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 10 375 3.3E-122 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_00800 012923bd0e7ab72677ab788679036499 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 260 280 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_00800 012923bd0e7ab72677ab788679036499 383 Gene3D G3DSA:1.20.1090.10 185 383 3.7E-73 T 13-10-2018 CS348_24010 3b063b53b20801033e40cc8b592dedd0 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 3.2E-68 T 13-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 CS348_24010 3b063b53b20801033e40cc8b592dedd0 206 PIRSF PIRSF006324 1 206 2.8E-41 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_24010 3b063b53b20801033e40cc8b592dedd0 206 Pfam PF01810 LysE type translocator 14 205 3.3E-56 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 SUPERFAMILY SSF53850 91 298 2.17E-42 T 13-10-2018 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 9.1E-20 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 Pfam PF03466 LysR substrate binding domain 90 294 4.0E-39 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_01200 8311ec68e223cb5bc386832f530a441a 300 Gene3D G3DSA:3.40.190.290 92 295 5.5E-59 T 13-10-2018 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.5E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.5E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.5E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_01200 8311ec68e223cb5bc386832f530a441a 300 Gene3D G3DSA:1.10.10.10 4 87 5.2E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01200 8311ec68e223cb5bc386832f530a441a 300 SUPERFAMILY SSF46785 7 85 4.57E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_07875 0762870914ef40373e4e093826019e4b 228 SUPERFAMILY SSF161098 7 205 3.01E-38 T 13-10-2018 IPR035906 MetI-like superfamily CS348_07875 0762870914ef40373e4e093826019e4b 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 114 4.1E-19 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_07875 0762870914ef40373e4e093826019e4b 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 219 5.1E-25 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_07875 0762870914ef40373e4e093826019e4b 228 Gene3D G3DSA:1.10.3720.10 2 222 2.2E-47 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 SMART SM00855 5 191 3.1E-28 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 SUPERFAMILY SSF53254 4 247 2.67E-78 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 PIRSF PIRSF000709 3 116 2.2E-9 T 13-10-2018 CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 PIRSF PIRSF000709 170 237 0.025 T 13-10-2018 CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 Gene3D G3DSA:3.40.50.1240 2 250 4.8E-95 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 1.2E-30 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.979 T 13-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CS348_16485 0a13fcaad440977a6943a28c468cb8a4 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 1.0E-130 T 13-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 Gene3D G3DSA:3.30.70.20 55 132 5.2E-11 T 13-10-2018 CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 Pfam PF12838 4Fe-4S dicluster domain 60 115 2.1E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 Gene3D G3DSA:3.30.70.20 137 219 6.1E-9 T 13-10-2018 CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 Pfam PF12800 4Fe-4S binding domain 183 196 0.2 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 Pfam PF12800 4Fe-4S binding domain 136 155 0.038 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 61 72 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 SUPERFAMILY SSF54862 59 204 1.36E-25 T 13-10-2018 CS348_08370 5b8f89ddbfb3a6ede6c628c92bf42681 231 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 10 216 4.3E-70 T 13-10-2018 IPR004494 MauM/NapG ferredoxin-type protein CS348_02115 1d39cb39316a9c2998ec292730c96ef2 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02115 1d39cb39316a9c2998ec292730c96ef2 38 SUPERFAMILY SSF57840 1 38 5.89E-17 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02115 1d39cb39316a9c2998ec292730c96ef2 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 3.0E-10 T 13-10-2018 CS348_02115 1d39cb39316a9c2998ec292730c96ef2 38 Pfam PF00444 Ribosomal protein L36 1 38 2.3E-20 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02115 1d39cb39316a9c2998ec292730c96ef2 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.829 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02115 1d39cb39316a9c2998ec292730c96ef2 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 5.9E-22 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02360 62d7bb521f77d75d936a9d4d8b01896d 350 Gene3D G3DSA:2.40.10.340 122 266 8.4E-33 T 13-10-2018 CS348_02360 62d7bb521f77d75d936a9d4d8b01896d 350 Gene3D G3DSA:2.40.10.350 180 257 8.4E-33 T 13-10-2018 CS348_02360 62d7bb521f77d75d936a9d4d8b01896d 350 Pfam PF04085 rod shape-determining protein MreC 123 269 4.8E-36 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CS348_02360 62d7bb521f77d75d936a9d4d8b01896d 350 PIRSF PIRSF038471 2 284 5.9E-75 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CS348_02360 62d7bb521f77d75d936a9d4d8b01896d 350 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 284 1.9E-125 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 SUPERFAMILY SSF56925 29 185 1.15E-25 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 177 185 - T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 Pfam PF06316 Enterobacterial Ail/Lom protein 4 185 4.2E-27 T 13-10-2018 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 44 56 9.7E-31 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 173 184 9.7E-31 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 92 115 9.7E-31 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 146 167 9.7E-31 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 Gene3D G3DSA:2.40.160.20 23 185 5.5E-51 T 13-10-2018 CS348_14140 a15c4ad0f310513307d91c8a92c4d49f 185 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 45 53 - T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_23660 00f3c99a0ec9110414ed1c558cbd8aa1 290 Pfam PF03631 Virulence factor BrkB 29 274 2.8E-58 T 13-10-2018 IPR017039 Virulence factor BrkB CS348_23660 00f3c99a0ec9110414ed1c558cbd8aa1 290 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 275 1.4E-105 T 13-10-2018 IPR017039 Virulence factor BrkB CS348_23660 00f3c99a0ec9110414ed1c558cbd8aa1 290 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 16 287 23.627 T 13-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial CS348_23660 00f3c99a0ec9110414ed1c558cbd8aa1 290 PIRSF PIRSF035875 1 290 4.2E-75 T 13-10-2018 IPR017039 Virulence factor BrkB CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 SMART SM00342 208 290 7.2E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 Pfam PF12833 Helix-turn-helix domain 215 291 2.1E-13 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 SUPERFAMILY SSF46689 244 292 6.09E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 Gene3D G3DSA:1.10.10.60 188 295 2.9E-22 T 13-10-2018 CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 9.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 9.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_05690 03cfe8c108e7d7b8248aef14a4b3e50d 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 244 286 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 27 677 28.634 T 13-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 Pfam PF01266 FAD dependent oxidoreductase 287 652 1.1E-49 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 SUPERFAMILY SSF51905 288 679 3.63E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 Gene3D G3DSA:3.50.50.60 286 679 8.7E-154 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 287 682 1.5E-161 T 13-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 138 264 1.3E-49 T 13-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 Gene3D G3DSA:3.40.50.150 29 271 9.9E-114 T 13-10-2018 CS348_07740 74d9e02a1ec460d61ea1293c631bfe84 686 Gene3D G3DSA:3.30.9.10 368 590 8.7E-154 T 13-10-2018 CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 SUPERFAMILY SSF53850 116 316 1.61E-22 T 13-10-2018 CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 SUPERFAMILY SSF46785 26 107 1.5E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 Gene3D G3DSA:3.40.190.10 189 288 1.3E-26 T 13-10-2018 CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 Gene3D G3DSA:1.10.10.10 21 109 5.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 Gene3D G3DSA:3.40.190.10 115 305 1.3E-26 T 13-10-2018 CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 31 89 1.8E-14 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_17055 dbef15305aaf72f63d794824c527d7d0 317 Pfam PF03466 LysR substrate binding domain 116 316 7.4E-19 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_21285 1127e823ff5422a9440e039d3e0ed73c 467 Pfam PF03606 C4-dicarboxylate anaerobic carrier 6 463 1.5E-129 T 13-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 CS348_00070 08b1ec559e3ea94fb5c88204165ed8eb 394 SUPERFAMILY SSF48695 9 185 1.85E-54 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_00070 08b1ec559e3ea94fb5c88204165ed8eb 394 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 184 1.8E-69 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal CS348_00070 08b1ec559e3ea94fb5c88204165ed8eb 394 Gene3D G3DSA:1.10.3820.10 10 188 6.8E-40 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily CS348_00070 08b1ec559e3ea94fb5c88204165ed8eb 394 PIRSF PIRSF000014 1 385 4.5E-180 T 13-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 CS348_00070 08b1ec559e3ea94fb5c88204165ed8eb 394 TIGRFAM TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC 2 382 2.9E-193 T 13-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 SUPERFAMILY SSF52540 141 391 4.46E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 SMART SM00382 184 323 1.9E-26 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Gene3D G3DSA:1.20.58.760 397 600 1.4E-70 T 13-10-2018 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Gene3D G3DSA:2.40.50.920 24 100 2.2E-39 T 13-10-2018 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 608 37.46 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Pfam PF01434 Peptidase family M41 382 591 6.6E-83 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 593 3.9E-248 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Gene3D G3DSA:3.40.50.300 141 320 6.6E-71 T 13-10-2018 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Pfam PF06480 FtsH Extracellular 5 93 7.0E-17 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 6.4E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 Gene3D G3DSA:1.10.8.60 322 396 2.5E-28 T 13-10-2018 CS348_02760 7b0a50791bd5ecf89b4ccc46b756bb4e 644 SUPERFAMILY SSF140990 402 602 4.19E-73 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CS348_02665 4cde139017c16c8cddbff5748acfd542 325 Gene3D G3DSA:1.20.1420.30 35 309 2.1E-76 T 13-10-2018 CS348_02665 4cde139017c16c8cddbff5748acfd542 325 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 1.2E-96 T 13-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 CS348_02665 4cde139017c16c8cddbff5748acfd542 325 Pfam PF01699 Sodium/calcium exchanger protein 175 317 2.1E-26 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CS348_02665 4cde139017c16c8cddbff5748acfd542 325 Pfam PF01699 Sodium/calcium exchanger protein 4 144 5.9E-27 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CS348_02665 4cde139017c16c8cddbff5748acfd542 325 Gene3D G3DSA:1.20.58.1130 8 207 2.1E-76 T 13-10-2018 CS348_24320 f1d09c20219640fb2600e78ded7c8312 112 Pfam PF04219 Protein of unknown function, DUF 10 98 1.5E-39 T 13-10-2018 IPR007335 Protein of unknown function DUF413 CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 SUPERFAMILY SSF52540 459 687 1.04E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 Gene3D G3DSA:1.20.1560.10 145 449 3.2E-19 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 Pfam PF00664 ABC transporter transmembrane region 157 410 1.7E-7 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 SUPERFAMILY SSF90123 147 447 8.89E-26 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 SMART SM00382 492 676 2.5E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 Pfam PF00005 ABC transporter 484 630 1.2E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_22380 b946d46acfe97fd40ddb3ae08bd9cc5a 688 Gene3D G3DSA:3.40.50.300 454 688 6.5E-60 T 13-10-2018 CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 SUPERFAMILY SSF53383 2 425 3.31E-137 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 Pfam PF00202 Aminotransferase class-III 32 395 3.7E-79 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 Gene3D G3DSA:3.40.640.10 69 317 1.1E-180 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 107.916 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 2.2E-204 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CS348_19310 5bce335b366fe06a8046f63b8bbf24ff 426 Gene3D G3DSA:3.90.1150.10 7 419 1.1E-180 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_21540 4ffd206254a88eb256e8b57bf366b878 387 SUPERFAMILY SSF51338 4 373 1.51E-15 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_21540 4ffd206254a88eb256e8b57bf366b878 387 Gene3D G3DSA:2.30.40.10 13 370 3.2E-110 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_21540 4ffd206254a88eb256e8b57bf366b878 387 Pfam PF01979 Amidohydrolase family 54 369 2.0E-10 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CS348_21540 4ffd206254a88eb256e8b57bf366b878 387 SUPERFAMILY SSF51556 58 319 1.66E-54 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_21540 4ffd206254a88eb256e8b57bf366b878 387 Gene3D G3DSA:3.20.20.140 58 324 3.2E-110 T 13-10-2018 CS348_22155 9996ec7f67e45ebb3698aa14cacddf1f 239 SUPERFAMILY SSF52172 1 142 2.42E-29 T 13-10-2018 IPR011006 CheY-like superfamily CS348_22155 9996ec7f67e45ebb3698aa14cacddf1f 239 SMART SM00448 2 117 1.8E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_22155 9996ec7f67e45ebb3698aa14cacddf1f 239 PIRSF PIRSF006171 1 230 1.3E-81 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 CS348_22155 9996ec7f67e45ebb3698aa14cacddf1f 239 Gene3D G3DSA:3.40.50.2300 1 139 2.8E-26 T 13-10-2018 CS348_22155 9996ec7f67e45ebb3698aa14cacddf1f 239 Pfam PF00072 Response regulator receiver domain 4 117 3.5E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 Gene3D G3DSA:2.130.10.10 22 391 7.5E-98 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 390 1.3E-133 T 13-10-2018 IPR017687 Outer membrane protein assembly factor BamB CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 392 40.946 T 13-10-2018 IPR017687 Outer membrane protein assembly factor BamB CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 Pfam PF13360 PQQ-like domain 78 319 4.8E-51 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 289 320 230.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 200 231 110.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 329 361 0.0066 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 65 96 1.1E-4 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 251 282 2.8E-5 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 155 186 6.7E-5 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SMART SM00564 114 146 0.0038 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CS348_06960 090392d5b9d1f828ae11225eac177a8d 392 SUPERFAMILY SSF50998 32 384 2.36E-78 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 Gene3D G3DSA:2.60.300.12 1 98 2.1E-12 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 Pfam PF01106 NifU-like domain 111 177 1.7E-20 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.068 T 13-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 8.8E-100 T 13-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 SUPERFAMILY SSF89360 1 97 2.16E-20 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 2.0E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 99 9.2E-13 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 SUPERFAMILY SSF117916 95 184 7.63E-25 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily CS348_01615 3633e77d4a32b41a2451fc38cb1c2189 191 Gene3D G3DSA:3.30.300.130 101 188 3.8E-21 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily CS348_16690 87854c83f696f3f403a064e99700b766 310 Gene3D G3DSA:2.40.100.10 170 310 3.4E-57 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_16690 87854c83f696f3f403a064e99700b766 310 SUPERFAMILY SSF50891 173 288 1.1E-11 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_16690 87854c83f696f3f403a064e99700b766 310 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 25 281 9.7E-92 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CS348_16690 87854c83f696f3f403a064e99700b766 310 SMART SM00797 23 298 5.6E-146 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CS348_16690 87854c83f696f3f403a064e99700b766 310 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 309 5.7E-133 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CS348_18275 4f96d4c79cee3effc0301d3f84923ab7 139 Pfam PF01029 NusB family 7 131 1.2E-34 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CS348_18275 4f96d4c79cee3effc0301d3f84923ab7 139 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 131 4.0E-45 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 CS348_18275 4f96d4c79cee3effc0301d3f84923ab7 139 Gene3D G3DSA:1.10.940.10 1 139 2.2E-53 T 13-10-2018 IPR035926 NusB-like superfamily CS348_18275 4f96d4c79cee3effc0301d3f84923ab7 139 SUPERFAMILY SSF48013 3 134 9.03E-42 T 13-10-2018 IPR035926 NusB-like superfamily CS348_18275 4f96d4c79cee3effc0301d3f84923ab7 139 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 23.222 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 CS348_11570 340c9c5eca38d63b08f7fa6f16d37553 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 64 1.3E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_11570 340c9c5eca38d63b08f7fa6f16d37553 196 SUPERFAMILY SSF46689 7 71 1.84E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_11570 340c9c5eca38d63b08f7fa6f16d37553 196 SUPERFAMILY SSF48498 90 189 7.67E-10 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_11570 340c9c5eca38d63b08f7fa6f16d37553 196 Gene3D G3DSA:1.10.357.10 80 192 5.6E-7 T 13-10-2018 CS348_11570 340c9c5eca38d63b08f7fa6f16d37553 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 32 62 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CS348_11570 340c9c5eca38d63b08f7fa6f16d37553 196 Gene3D G3DSA:1.10.10.60 6 74 9.0E-25 T 13-10-2018 CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 2.2E-21 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 Gene3D G3DSA:3.30.1340.10 1 88 1.4E-22 T 13-10-2018 IPR035895 HPr-like superfamily CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 SUPERFAMILY SSF55594 1 87 1.01E-22 T 13-10-2018 IPR035895 HPr-like superfamily CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 7.8E-10 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 7.8E-10 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 7.8E-10 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 13-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CS348_00300 bcb483fdbd817a57e8b7bd965ebcdca8 89 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.1E-20 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 Gene3D G3DSA:3.40.50.740 316 470 7.8E-61 T 13-10-2018 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 SUPERFAMILY SSF50692 641 803 3.84E-44 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 Pfam PF00384 Molybdopterin oxidoreductase 2 377 1.8E-22 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 Gene3D G3DSA:3.40.228.10 1 273 6.6E-73 T 13-10-2018 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 Gene3D G3DSA:2.40.40.20 628 803 5.0E-77 T 13-10-2018 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 9.8E-16 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 Gene3D G3DSA:3.40.228.10 484 627 2.3E-30 T 13-10-2018 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 SUPERFAMILY SSF53706 1 638 6.54E-235 T 13-10-2018 CS348_12150 bf838aab5f9af0bb49ea0d3e997a91bf 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 13-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 Gene3D G3DSA:3.40.190.290 94 268 2.3E-16 T 13-10-2018 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 Pfam PF03466 LysR substrate binding domain 89 285 5.6E-21 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 SUPERFAMILY SSF53850 91 286 4.81E-26 T 13-10-2018 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 6.3E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 Gene3D G3DSA:1.10.10.10 1 86 9.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04885 1edb0854d5da8a002fb8a262f36b6162 287 SUPERFAMILY SSF46785 6 86 9.47E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_18545 846bec6cfd8fc35cdbe89a05d33aeeac 91 Gene3D G3DSA:3.30.1660.10 21 91 2.2E-27 T 13-10-2018 IPR025543 Dodecin-like CS348_18545 846bec6cfd8fc35cdbe89a05d33aeeac 91 Pfam PF07338 Protein of unknown function (DUF1471) 37 89 4.5E-15 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_18545 846bec6cfd8fc35cdbe89a05d33aeeac 91 SUPERFAMILY SSF159871 2 90 4.45E-23 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_04900 08bbd87b046220e1befe2610244c4f15 278 SUPERFAMILY SSF51182 2 262 5.64E-105 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_04900 08bbd87b046220e1befe2610244c4f15 278 Gene3D G3DSA:2.60.120.10 10 264 5.1E-120 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_04900 08bbd87b046220e1befe2610244c4f15 278 Gene3D G3DSA:2.60.120.520 30 144 5.1E-120 T 13-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CS348_04900 08bbd87b046220e1befe2610244c4f15 278 PIRSF PIRSF006625 1 278 4.1E-130 T 13-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CS348_04900 08bbd87b046220e1befe2610244c4f15 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 278 55.192 T 13-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CS348_04900 08bbd87b046220e1befe2610244c4f15 278 Pfam PF04962 KduI/IolB family 37 273 1.8E-36 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 PRINTS PR00969 Pili chaperone signature 112 129 2.3E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 PRINTS PR00969 Pili chaperone signature 33 42 2.3E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 PRINTS PR00969 Pili chaperone signature 84 105 2.3E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 PRINTS PR00969 Pili chaperone signature 170 185 2.3E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 PRINTS PR00969 Pili chaperone signature 135 150 2.3E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 SUPERFAMILY SSF49584 147 233 3.53E-20 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 Gene3D G3DSA:2.60.40.10 157 240 3.5E-19 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 SUPERFAMILY SSF49354 27 153 1.05E-33 T 13-10-2018 IPR008962 PapD-like superfamily CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 Gene3D G3DSA:2.60.40.10 34 154 5.9E-32 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 32 153 1.6E-34 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_20230 7833fc3cd7364ba4c5603b818de648bc 243 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 175 231 8.6E-14 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_00620 cb4fb28579c13260c4582fd108f843ff 359 Gene3D G3DSA:3.40.50.2000 176 330 2.4E-31 T 13-10-2018 CS348_00620 cb4fb28579c13260c4582fd108f843ff 359 Pfam PF00534 Glycosyl transferases group 1 169 333 3.1E-30 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_00620 cb4fb28579c13260c4582fd108f843ff 359 SUPERFAMILY SSF53756 2 328 1.84E-51 T 13-10-2018 CS348_00620 cb4fb28579c13260c4582fd108f843ff 359 Gene3D G3DSA:3.40.50.2000 1 171 5.0E-10 T 13-10-2018 CS348_00740 d80b57e323f6a7eb199bf623427af259 551 Pfam PF02652 L-lactate permease 16 542 1.8E-232 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 CS348_00740 d80b57e323f6a7eb199bf623427af259 551 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 6 544 8.9E-239 T 13-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 CS348_12290 fbf0d18d3e4b874273aa3bc5cc05e138 129 SUPERFAMILY SSF55298 8 129 1.05E-35 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_12290 fbf0d18d3e4b874273aa3bc5cc05e138 129 Pfam PF01042 Endoribonuclease L-PSP 15 127 2.7E-29 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CS348_12290 fbf0d18d3e4b874273aa3bc5cc05e138 129 Gene3D G3DSA:3.30.1330.40 1 129 6.0E-42 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CS348_05715 77caa6063636e8279bef01dbab415c22 286 Gene3D G3DSA:1.10.3470.10 37 269 3.1E-10 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_05715 77caa6063636e8279bef01dbab415c22 286 Pfam PF00950 ABC 3 transport family 10 264 6.3E-81 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CS348_05715 77caa6063636e8279bef01dbab415c22 286 SUPERFAMILY SSF81345 3 260 1.29E-38 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 PIRSF PIRSF000498 1 212 1.8E-76 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 Gene3D G3DSA:2.40.30.20 1 89 2.4E-33 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 Gene3D G3DSA:2.40.30.20 102 199 5.7E-28 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 Pfam PF00677 Lumazine binding domain 100 185 6.0E-22 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 Pfam PF00677 Lumazine binding domain 3 87 9.8E-23 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 4.0E-88 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 SUPERFAMILY SSF63380 1 93 1.11E-26 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_12945 f0caf19c67c96f8090f8ee2c7d72a9cd 213 SUPERFAMILY SSF63380 94 201 2.04E-31 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_21705 92f52339c135f71eadefc6c7c0278295 465 Pfam PF03611 PTS system sugar-specific permease component 15 410 9.9E-123 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CS348_04695 b8d23914181ff55fc2280029e8189235 129 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 13-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 CS348_04695 b8d23914181ff55fc2280029e8189235 129 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 129 2.3E-61 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CS348_04695 b8d23914181ff55fc2280029e8189235 129 SUPERFAMILY SSF51230 4 128 2.42E-46 T 13-10-2018 IPR011053 Single hybrid motif CS348_04695 b8d23914181ff55fc2280029e8189235 129 Pfam PF01597 Glycine cleavage H-protein 8 128 2.9E-50 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate CS348_04695 b8d23914181ff55fc2280029e8189235 129 Gene3D G3DSA:2.40.50.100 2 129 1.1E-54 T 13-10-2018 CS348_04695 b8d23914181ff55fc2280029e8189235 129 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 43.675 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CS348_02595 94a2932c3ebd27f3cf92b1d70edf6f15 217 SUPERFAMILY SSF52317 1 216 9.52E-66 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_02595 94a2932c3ebd27f3cf92b1d70edf6f15 217 Pfam PF01965 DJ-1/PfpI family 72 148 2.5E-6 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CS348_02595 94a2932c3ebd27f3cf92b1d70edf6f15 217 PIRSF PIRSF006320 1 216 5.5E-105 T 13-10-2018 IPR026041 Glyoxalase ElbB CS348_02595 94a2932c3ebd27f3cf92b1d70edf6f15 217 Gene3D G3DSA:3.40.50.880 1 217 1.1E-94 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_06530 e295cc8c650101274e4696ded7c9e6fb 107 PIRSF PIRSF034456 1 106 5.1E-61 T 13-10-2018 IPR017028 Uncharacterised conserved protein UCP034456 CS348_06530 e295cc8c650101274e4696ded7c9e6fb 107 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 24 99 1.3E-9 T 13-10-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein CS348_23585 f2f1ca52c540104aee7a460a60ca7d60 107 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 8 102 1.6E-11 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 PIRSF PIRSF002599 1 70 2.0E-13 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 PRINTS PR00050 Cold shock protein signature 43 61 6.7E-5 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 PRINTS PR00050 Cold shock protein signature 28 37 6.7E-5 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 PRINTS PR00050 Cold shock protein signature 7 22 6.7E-5 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 13-10-2018 IPR019844 Cold-shock conserved site CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.2E-20 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 Gene3D G3DSA:2.40.50.140 2 68 5.6E-15 T 13-10-2018 CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 SUPERFAMILY SSF50249 4 69 5.63E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_14160 b7a8351a75cc031087123df6d67c19aa 70 SMART SM00357 6 70 6.3E-9 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_24905 44d28c8b536c8888178a834c871fa00c 415 Gene3D G3DSA:3.40.50.620 7 250 2.4E-34 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_24905 44d28c8b536c8888178a834c871fa00c 415 Pfam PF11922 Domain of unknown function (DUF3440) 364 395 1.1E-7 T 13-10-2018 IPR021845 Protein of unknown function DUF3440 CS348_24905 44d28c8b536c8888178a834c871fa00c 415 Pfam PF11922 Domain of unknown function (DUF3440) 247 350 3.3E-28 T 13-10-2018 IPR021845 Protein of unknown function DUF3440 CS348_24905 44d28c8b536c8888178a834c871fa00c 415 SUPERFAMILY SSF52402 17 242 5.19E-37 T 13-10-2018 CS348_24905 44d28c8b536c8888178a834c871fa00c 415 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 170 245 2.3E-7 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CS348_24905 44d28c8b536c8888178a834c871fa00c 415 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 39 92 3.3E-6 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 Gene3D G3DSA:3.20.20.70 1 220 1.8E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 SUPERFAMILY SSF51569 1 218 1.36E-65 T 13-10-2018 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 13-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 4.7E-102 T 13-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 Hamap MF_00496 Fructose-6-phosphate aldolase [fsa]. 1 220 49.907 T 13-10-2018 IPR023001 Fructose-6-phosphate aldolase GO:0016832 CS348_23040 4ec6e1df134195b9815b7495a4dde842 220 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 4.3E-47 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CS348_24215 8bc4087430434060415174178f5bec09 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.0E-17 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CS348_24215 8bc4087430434060415174178f5bec09 419 SMART SM00382 170 355 5.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24215 8bc4087430434060415174178f5bec09 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.0E-222 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CS348_24215 8bc4087430434060415174178f5bec09 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 252.49 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CS348_24215 8bc4087430434060415174178f5bec09 419 Gene3D G3DSA:3.40.50.300 130 417 1.4E-134 T 13-10-2018 CS348_24215 8bc4087430434060415174178f5bec09 419 SMART SM00959 5 47 1.1E-18 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CS348_24215 8bc4087430434060415174178f5bec09 419 Gene3D G3DSA:2.40.50.140 48 117 1.3E-35 T 13-10-2018 CS348_24215 8bc4087430434060415174178f5bec09 419 Gene3D G3DSA:1.10.720.10 1 47 1.0E-24 T 13-10-2018 CS348_24215 8bc4087430434060415174178f5bec09 419 SMART SM00357 52 118 9.6E-19 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_24215 8bc4087430434060415174178f5bec09 419 SUPERFAMILY SSF50249 48 125 9.0E-30 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_24215 8bc4087430434060415174178f5bec09 419 SUPERFAMILY SSF52540 90 371 1.22E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24215 8bc4087430434060415174178f5bec09 419 SUPERFAMILY SSF68912 1 46 2.2E-12 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily CS348_24215 8bc4087430434060415174178f5bec09 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 2.7E-32 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 CS348_24215 8bc4087430434060415174178f5bec09 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 8.1E-23 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 36 67 6.2E-15 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 Gene3D G3DSA:1.20.120.910 1 72 4.8E-26 T 13-10-2018 CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 9 67 2.8E-17 T 13-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 SUPERFAMILY SSF57716 39 72 1.57E-8 T 13-10-2018 CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 39 63 - T 13-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 PRINTS PR00618 DksA/TraR zinc finger signature 39 50 2.3E-6 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CS348_16205 68d9a6001ea97525efc30fcc2f7718ea 88 PRINTS PR00618 DksA/TraR zinc finger signature 51 63 2.3E-6 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CS348_17875 7d079fd343a0b33588fad6fdfbc56a49 264 Pfam PF01963 TraB family 30 264 3.7E-38 T 13-10-2018 IPR002816 Pheromone shutdown, TraB CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 SUPERFAMILY SSF51215 16 157 1.83E-13 T 13-10-2018 IPR037923 Transcription regulator HTH-like CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 266 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 Gene3D G3DSA:1.10.10.60 166 275 5.6E-33 T 13-10-2018 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 Pfam PF12833 Helix-turn-helix domain 193 271 1.7E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 Pfam PF02311 AraC-like ligand binding domain 18 139 7.7E-22 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 Hamap MF_01534 HTH-type transcriptional activator RhaS [rhaS]. 1 273 56.692 T 13-10-2018 IPR023609 Transcription regulator HTH, RhaS GO:0003700|GO:0006355|GO:0019299 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 SUPERFAMILY SSF46689 170 221 2.24E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 254 1.0E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 254 270 1.0E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 SUPERFAMILY SSF46689 223 272 3.72E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 SMART SM00342 187 270 4.4E-34 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_23545 1cfddc7e828c558bd7a9d5aa87c2155f 278 Gene3D G3DSA:2.60.120.10 22 95 4.3E-7 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_12535 81fb6f76533005d0060552c3f775783d 236 ProDom PD120112 LIPOPROTEIN YNFC MEMBRANE UPF0257 PRECURSOR PALMITATE SIGNAL INNER 1 236 7.0E-139 T 13-10-2018 IPR010646 Uncharacterised protein family UPF0257 GO:0005886 CS348_12535 81fb6f76533005d0060552c3f775783d 236 Hamap MF_01065 UPF0257 lipoprotein YnfC [ynfC]. 1 236 43.953 T 13-10-2018 IPR010646 Uncharacterised protein family UPF0257 GO:0005886 CS348_12535 81fb6f76533005d0060552c3f775783d 236 Pfam PF06788 Uncharacterised protein family (UPF0257) 1 236 1.4E-128 T 13-10-2018 IPR010646 Uncharacterised protein family UPF0257 GO:0005886 CS348_05775 3e822bc09b41bdb3e02bcf7bf7add71d 202 SUPERFAMILY SSF54862 2 183 9.42E-42 T 13-10-2018 CS348_05775 3e822bc09b41bdb3e02bcf7bf7add71d 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 82 93 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_05775 3e822bc09b41bdb3e02bcf7bf7add71d 202 Gene3D G3DSA:3.30.70.20 32 192 1.3E-25 T 13-10-2018 CS348_05775 3e822bc09b41bdb3e02bcf7bf7add71d 202 Pfam PF13247 4Fe-4S dicluster domain 47 97 1.1E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 Gene3D G3DSA:1.20.1560.10 4 318 1.1E-74 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 SMART SM00382 361 547 2.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 SUPERFAMILY SSF52540 330 572 2.66E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 Pfam PF00664 ABC transporter transmembrane region 22 291 3.9E-39 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 Pfam PF00005 ABC transporter 352 500 7.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 Gene3D G3DSA:3.40.50.300 331 583 1.1E-81 T 13-10-2018 CS348_18065 d8eaf5af4527b933ef6b535c4b2303d7 590 SUPERFAMILY SSF90123 7 327 9.81E-72 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_20745 0c11063a1da03cf277c1623758df00bc 98 SUPERFAMILY SSF101386 19 63 1.14E-5 T 13-10-2018 CS348_11640 395ee9527acb4e09cf833697879cc0e9 315 SUPERFAMILY SSF52402 4 154 8.37E-26 T 13-10-2018 CS348_11640 395ee9527acb4e09cf833697879cc0e9 315 Pfam PF00582 Universal stress protein family 3 146 2.2E-18 T 13-10-2018 IPR006016 UspA CS348_11640 395ee9527acb4e09cf833697879cc0e9 315 Pfam PF00582 Universal stress protein family 174 300 2.6E-14 T 13-10-2018 IPR006016 UspA CS348_11640 395ee9527acb4e09cf833697879cc0e9 315 SUPERFAMILY SSF52402 155 307 1.93E-24 T 13-10-2018 CS348_11640 395ee9527acb4e09cf833697879cc0e9 315 Gene3D G3DSA:3.40.50.12370 1 315 3.5E-140 T 13-10-2018 CS348_06155 df2343c9d5a196854ff05b7c32cb5d73 325 PIRSF PIRSF017082 1 325 6.9E-77 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 CS348_06155 df2343c9d5a196854ff05b7c32cb5d73 325 Gene3D G3DSA:3.40.190.10 124 251 1.0E-53 T 13-10-2018 CS348_06155 df2343c9d5a196854ff05b7c32cb5d73 325 SUPERFAMILY SSF53850 100 276 1.22E-7 T 13-10-2018 CS348_06155 df2343c9d5a196854ff05b7c32cb5d73 325 Gene3D G3DSA:3.40.190.150 30 315 1.0E-53 T 13-10-2018 CS348_06155 df2343c9d5a196854ff05b7c32cb5d73 325 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 111 312 2.4E-18 T 13-10-2018 IPR005064 Bordetella uptake gene GO:0030288 CS348_09265 ccc5561a06275fb603004c0c9442fbd6 258 Pfam PF00977 Histidine biosynthesis protein 5 239 5.7E-78 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 CS348_09265 ccc5561a06275fb603004c0c9442fbd6 258 Gene3D G3DSA:3.20.20.70 1 258 2.2E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_09265 ccc5561a06275fb603004c0c9442fbd6 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 44.728 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CS348_09265 ccc5561a06275fb603004c0c9442fbd6 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 2.2E-116 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CS348_09265 ccc5561a06275fb603004c0c9442fbd6 258 SUPERFAMILY SSF51366 1 257 8.63E-73 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_08200 79ab2daffa32f13f71fbfd4fa4f56a50 267 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 19 244 6.8E-66 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_08200 79ab2daffa32f13f71fbfd4fa4f56a50 267 Hamap MF_01290 2-keto-3-deoxy-L-rhamnonate aldolase [rhmA]. 1 267 67.469 T 13-10-2018 IPR023593 2-keto-3-deoxy-L-rhamnonate aldolase GO:0016832 KEGG: 00051+4.1.2.53|MetaCyc: PWY-6713 CS348_08200 79ab2daffa32f13f71fbfd4fa4f56a50 267 Gene3D G3DSA:3.20.20.60 1 267 2.6E-95 T 13-10-2018 CS348_08200 79ab2daffa32f13f71fbfd4fa4f56a50 267 SUPERFAMILY SSF51621 5 259 1.7E-81 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_13775 8d79cdd384f9fb001fa60782314a1da5 302 Gene3D G3DSA:3.40.1440.10 30 123 4.7E-21 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CS348_13775 8d79cdd384f9fb001fa60782314a1da5 302 SMART SM00465 43 121 1.3E-15 T 13-10-2018 IPR000305 GIY-YIG endonuclease CS348_13775 8d79cdd384f9fb001fa60782314a1da5 302 SUPERFAMILY SSF82771 44 120 5.23E-11 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.6E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.6E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.6E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 Pfam PF03466 LysR substrate binding domain 89 287 2.2E-40 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 SUPERFAMILY SSF46785 1 86 6.48E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 Gene3D G3DSA:1.10.10.10 1 90 6.8E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 Gene3D G3DSA:3.40.190.290 91 289 7.2E-45 T 13-10-2018 CS348_22330 49108ee856e1b9c7ace2772dc237e4b1 295 SUPERFAMILY SSF53850 90 289 1.74E-39 T 13-10-2018 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 77 325 1.1E-29 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 Pfam PF05683 Fumarase C-terminus 332 537 5.3E-94 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 Gene3D G3DSA:3.20.130.10 348 537 4.7E-58 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 Pfam PF05681 Fumarate hydratase (Fumerase) 51 326 5.8E-85 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 SUPERFAMILY SSF117457 361 536 2.75E-62 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 PIRSF PIRSF001394 30 548 4.4E-236 T 13-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 4.4E-63 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CS348_12715 1d270cca7b2d2452360f33eea572c44b 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CS348_21620 9950cb58e8bc7a5c93e11d802a4efeef 220 Gene3D G3DSA:1.20.120.520 74 218 5.4E-32 T 13-10-2018 CS348_21620 9950cb58e8bc7a5c93e11d802a4efeef 220 Pfam PF04405 Domain of Unknown function (DUF542) 5 58 6.9E-19 T 13-10-2018 IPR019903 Repair of iron centres family CS348_21620 9950cb58e8bc7a5c93e11d802a4efeef 220 Pfam PF01814 Hemerythrin HHE cation binding domain 77 216 1.2E-27 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CS348_21620 9950cb58e8bc7a5c93e11d802a4efeef 220 Hamap MF_01606 Iron-sulfur cluster repair protein YtfE [ytfE]. 1 220 51.501 T 13-10-2018 IPR023742 Iron-sulfur cluster repair protein YftE GO:0030091 CS348_21620 9950cb58e8bc7a5c93e11d802a4efeef 220 TIGRFAM TIGR03652 FeS_repair_RIC: iron-sulfur cluster repair di-iron protein 8 216 6.1E-81 T 13-10-2018 IPR019903 Repair of iron centres family CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 269 39.061 T 13-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 PRINTS PR00625 DnaJ domain signature 248 268 1.1E-7 T 13-10-2018 IPR001623 DnaJ domain CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 PRINTS PR00625 DnaJ domain signature 224 239 1.1E-7 T 13-10-2018 IPR001623 DnaJ domain CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 PRINTS PR00625 DnaJ domain signature 206 224 1.1E-7 T 13-10-2018 IPR001623 DnaJ domain CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 Pfam PF05099 Tellurite resistance protein TerB 47 170 1.3E-9 T 13-10-2018 IPR007791 Co-chaperone DjlA, N-terminal CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 SUPERFAMILY SSF46565 131 266 7.11E-31 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 Gene3D G3DSA:1.10.287.110 186 268 1.7E-14 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 Gene3D G3DSA:1.10.3680.10 40 182 3.8E-19 T 13-10-2018 IPR029024 TerB-like CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 SMART SM00271 203 268 2.7E-16 T 13-10-2018 IPR001623 DnaJ domain CS348_19870 83f8b58a0bd7d2e18e87ba2cf022ab0c 270 Pfam PF00226 DnaJ domain 207 266 7.0E-11 T 13-10-2018 IPR001623 DnaJ domain CS348_12270 ae0f0dba0014f77ccb3a0acee5af236a 110 Pfam PF07377 Protein of unknown function (DUF1493) 4 110 3.8E-38 T 13-10-2018 IPR010862 Protein of unknown function DUF1493 CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 29 445 2.5E-117 T 13-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 Gene3D G3DSA:3.30.300.30 356 453 2.7E-17 T 13-10-2018 CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 SUPERFAMILY SSF56801 8 451 2.09E-95 T 13-10-2018 CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 Pfam PF13193 AMP-binding enzyme C-terminal domain 366 425 2.2E-8 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 Pfam PF00501 AMP-binding enzyme 12 355 5.0E-50 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 ProSitePatterns PS00455 Putative AMP-binding domain signature. 139 150 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_08120 a693a25e0629de6753e34bb44ad32ef7 455 Gene3D G3DSA:3.40.50.12780 8 355 1.3E-64 T 13-10-2018 CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 310 60.952 T 13-10-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 243 7.2E-33 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 Gene3D G3DSA:2.40.30.170 172 295 5.0E-22 T 13-10-2018 CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 Pfam PF13533 Biotin-lipoyl like 47 95 8.0E-19 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 SUPERFAMILY SSF111369 46 215 3.66E-22 T 13-10-2018 CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 Pfam PF13437 HlyD family secretion protein 156 251 3.5E-10 T 13-10-2018 CS348_02400 7363baaa5a48de580148aa1b63cfb8ac 310 Gene3D G3DSA:2.40.50.100 47 114 4.8E-11 T 13-10-2018 CS348_09540 48b40de8f3529d2c0db0ccd5a94e8d55 264 PIRSF PIRSF033579 1 264 5.1E-108 T 13-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 CS348_09540 48b40de8f3529d2c0db0ccd5a94e8d55 264 Gene3D G3DSA:3.40.50.1400 3 255 4.4E-98 T 13-10-2018 CS348_09540 48b40de8f3529d2c0db0ccd5a94e8d55 264 Gene3D G3DSA:3.40.50.1400 114 236 4.4E-98 T 13-10-2018 CS348_09540 48b40de8f3529d2c0db0ccd5a94e8d55 264 Pfam PF06180 Cobalt chelatase (CbiK) 3 256 4.3E-105 T 13-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 CS348_09540 48b40de8f3529d2c0db0ccd5a94e8d55 264 SUPERFAMILY SSF53800 2 256 1.96E-78 T 13-10-2018 CS348_09225 50c14fbbb26c9231a64da510f9809100 461 Pfam PF00483 Nucleotidyl transferase 4 284 2.9E-65 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CS348_09225 50c14fbbb26c9231a64da510f9809100 461 Gene3D G3DSA:3.90.550.10 3 348 2.5E-118 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09225 50c14fbbb26c9231a64da510f9809100 461 Gene3D G3DSA:2.60.120.10 354 461 5.1E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_09225 50c14fbbb26c9231a64da510f9809100 461 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 460 6.5E-221 T 13-10-2018 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 CS348_09225 50c14fbbb26c9231a64da510f9809100 461 SUPERFAMILY SSF51182 183 460 1.78E-81 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_09225 50c14fbbb26c9231a64da510f9809100 461 Pfam PF01050 Mannose-6-phosphate isomerase 313 460 2.3E-64 T 13-10-2018 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 CS348_09225 50c14fbbb26c9231a64da510f9809100 461 SUPERFAMILY SSF53448 2 279 5.63E-70 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 9.8E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 SUPERFAMILY SSF46894 132 226 3.4E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 SMART SM00862 150 226 2.9E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 SMART SM00448 4 115 6.4E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 Gene3D G3DSA:3.40.50.2300 1 128 8.7E-34 T 13-10-2018 CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 Gene3D G3DSA:1.10.10.10 137 229 6.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 Pfam PF00072 Response regulator receiver domain 6 115 1.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_20425 866496c4a89591746acdb1dbaee96ee8 229 SUPERFAMILY SSF52172 2 130 1.71E-38 T 13-10-2018 IPR011006 CheY-like superfamily CS348_21260 ee9a490fbf28ef7c554e095339563380 150 Pfam PF04074 Domain of unknown function (DUF386) 1 147 7.2E-44 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family CS348_21260 ee9a490fbf28ef7c554e095339563380 150 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 150 5.2E-58 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family CS348_21260 ee9a490fbf28ef7c554e095339563380 150 Gene3D G3DSA:2.60.120.370 1 150 3.1E-40 T 13-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily CS348_21260 ee9a490fbf28ef7c554e095339563380 150 SUPERFAMILY SSF51197 1 149 8.51E-44 T 13-10-2018 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 74 89 1.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 89 105 1.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 SUPERFAMILY SSF46689 6 56 3.14E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 SMART SM00342 22 105 1.5E-33 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 SUPERFAMILY SSF46689 59 108 2.09E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 Gene3D G3DSA:1.10.10.60 60 112 1.2E-16 T 13-10-2018 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 Gene3D G3DSA:1.10.10.60 4 56 8.6E-25 T 13-10-2018 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 Pfam PF12833 Helix-turn-helix domain 28 106 2.1E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_17340 5e64cb173aa2218d0d3d170dba5a7bd8 113 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 59 101 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 118 128 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 Pfam PF01195 Peptidyl-tRNA hydrolase 13 196 1.6E-53 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 Gene3D G3DSA:3.40.50.1470 4 202 7.8E-77 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 11 197 2.0E-72 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 SUPERFAMILY SSF53178 11 200 3.14E-70 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 11 190 36.266 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CS348_10910 91d794ac0ee3adc35657954b113df33f 202 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 24 37 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 SUPERFAMILY SSF53383 4 396 1.3E-126 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 Gene3D G3DSA:3.90.1150.10 37 388 1.7E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.953 T 13-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 Pfam PF00155 Aminotransferase class I and II 43 387 1.6E-78 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 2.0E-224 T 13-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 CS348_00670 29dc66ca1ce9e2a1f4dfae69f0d983a7 398 Gene3D G3DSA:3.40.640.10 58 296 1.7E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_22335 cc4e01ee92879d86565d8e2c17e653a2 548 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 1.0E-245 T 13-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 CS348_22335 cc4e01ee92879d86565d8e2c17e653a2 548 Gene3D G3DSA:1.20.1530.20 1 349 1.5E-9 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_22335 cc4e01ee92879d86565d8e2c17e653a2 548 Pfam PF00999 Sodium/hydrogen exchanger family 7 421 3.0E-78 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CS348_07570 08e087d5b431490e0770e01191bab793 207 Gene3D G3DSA:1.10.10.60 161 207 6.4E-7 T 13-10-2018 CS348_07570 08e087d5b431490e0770e01191bab793 207 Pfam PF08765 Mor transcription activator family 161 205 3.1E-6 T 13-10-2018 IPR014875 Mor transcription activator CS348_07570 08e087d5b431490e0770e01191bab793 207 SUPERFAMILY SSF46689 160 205 1.08E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_01520 0365cbaf818ea99564b103c879f6ab88 231 SUPERFAMILY SSF51182 1 231 1.75E-79 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_01520 0365cbaf818ea99564b103c879f6ab88 231 Gene3D G3DSA:2.60.120.10 11 135 2.0E-104 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_01520 0365cbaf818ea99564b103c879f6ab88 231 Pfam PF02678 Pirin 9 119 2.3E-37 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CS348_01520 0365cbaf818ea99564b103c879f6ab88 231 Gene3D G3DSA:2.60.120.10 7 229 2.0E-104 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_01520 0365cbaf818ea99564b103c879f6ab88 231 PIRSF PIRSF006232 1 230 6.9E-56 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CS348_00350 2ae0888f3c4740511b12fc350c81974b 249 Pfam PF03609 PTS system sorbose-specific iic component 7 238 2.4E-74 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 CS348_08935 926355e6129ba38592f352ac7cef6a3b 334 Gene3D G3DSA:1.10.4080.10 2 331 9.9E-71 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily CS348_08935 926355e6129ba38592f352ac7cef6a3b 334 SUPERFAMILY SSF101478 4 325 1.31E-67 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily CS348_08935 926355e6129ba38592f352ac7cef6a3b 334 Pfam PF03747 ADP-ribosylglycohydrolase 8 302 3.0E-59 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 CS348_09960 873673beacc0571f49756730c8fdd5e4 183 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 90 166 2.3E-16 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CS348_09960 873673beacc0571f49756730c8fdd5e4 183 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 167 3.6E-88 T 13-10-2018 IPR022523 Flagellar regulator, FliZ CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.495 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 SUPERFAMILY SSF52943 2 287 4.58E-97 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 13-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 Gene3D G3DSA:3.40.1380.10 61 206 4.3E-114 T 13-10-2018 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 1.9E-37 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.9E-37 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 1.9E-37 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.9E-37 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 Pfam PF00231 ATP synthase 5 286 2.3E-96 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 9.7E-113 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24470 9381e7326b46af4557bd7bd3af4c739c 287 Gene3D G3DSA:1.10.287.80 6 283 4.3E-114 T 13-10-2018 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 Gene3D G3DSA:3.40.50.1260 165 373 4.0E-156 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 SUPERFAMILY SSF53748 3 383 7.89E-145 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 1.6E-82 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 Pfam PF00162 Phosphoglycerate kinase 6 373 3.2E-140 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 PIRSF PIRSF000724 1 387 7.3E-134 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 Gene3D G3DSA:3.40.50.1260 10 379 4.0E-156 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 39.149 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_04610 440ac04ba773630d821ba1e4b05f8719 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_23830 d146a5b41660a65543cbc67c5d868d7e 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 5.0E-45 T 13-10-2018 IPR009383 Protein of unknown function DUF1040 CS348_23830 d146a5b41660a65543cbc67c5d868d7e 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 4.1E-46 T 13-10-2018 IPR009383 Protein of unknown function DUF1040 CS348_23830 d146a5b41660a65543cbc67c5d868d7e 89 Gene3D G3DSA:1.10.1580.20 1 89 1.3E-48 T 13-10-2018 IPR038134 YihD-like superfamily CS348_11605 a74ee5f3f07010ed3f1fd487a56a46f0 274 Gene3D G3DSA:2.60.40.10 172 273 4.8E-16 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_11605 a74ee5f3f07010ed3f1fd487a56a46f0 274 Pfam PF16583 Zinc-regulated secreted antivirulence protein C-terminal domain 132 264 1.5E-31 T 13-10-2018 IPR032262 Zinc-regulated secreted antivirulence protein, C-terminal CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 Gene3D G3DSA:3.40.190.10 35 243 3.4E-88 T 13-10-2018 CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 SMART SM00079 26 245 1.3E-7 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 SMART SM00062 26 246 2.1E-74 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 SUPERFAMILY SSF53850 2 245 8.61E-75 T 13-10-2018 CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 244 1.1E-70 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 Gene3D G3DSA:3.40.190.10 110 205 3.4E-88 T 13-10-2018 CS348_16180 f1feb18b3cf0e7717c9d26cb2c6a3a75 248 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_22745 77637b77448d9cfb77aa78934be02ba9 151 Gene3D G3DSA:1.20.120.1490 43 123 8.4E-38 T 13-10-2018 CS348_22745 77637b77448d9cfb77aa78934be02ba9 151 Pfam PF13801 Heavy-metal resistance 8 124 5.9E-25 T 13-10-2018 IPR025961 Heavy-metal resistance protein CS348_22745 77637b77448d9cfb77aa78934be02ba9 151 ProDom PD097062 ZINC RESISTANCE-ASSOCIATED PERIPLASMIC PRECURSOR SIGNAL YJAI SEQUENCING DIRECT DFFA 28 123 2.0E-51 T 13-10-2018 IPR020365 Zinc resistance-associated protein, ZraP GO:0008270|GO:0042597 CS348_06660 2ce9cd8398e4769c97ea26f4a9687fcd 243 SUPERFAMILY SSF63892 4 241 1.96E-102 T 13-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CS348_06660 2ce9cd8398e4769c97ea26f4a9687fcd 243 Gene3D G3DSA:3.20.20.70 1 243 2.8E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_06660 2ce9cd8398e4769c97ea26f4a9687fcd 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 4.1E-107 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CS348_06660 2ce9cd8398e4769c97ea26f4a9687fcd 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 9.5E-113 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CS348_06660 2ce9cd8398e4769c97ea26f4a9687fcd 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 135.354 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Pfam PF14814 Bifunctional transglycosylase second domain 108 192 1.5E-26 T 13-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 PIRSF PIRSF002799 6 838 0.0 T 13-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Gene3D G3DSA:1.20.5.100 49 91 3.3E-25 T 13-10-2018 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Gene3D G3DSA:3.40.710.10 98 758 2.6E-269 T 13-10-2018 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 74 1.2E-26 T 13-10-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 63 790 0.0 T 13-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Gene3D G3DSA:1.10.3810.10 196 399 2.6E-269 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 SUPERFAMILY SSF53955 192 398 1.91E-65 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Pfam PF00912 Transglycosylase 204 375 3.2E-54 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Pfam PF00905 Penicillin binding protein transpeptidase domain 468 710 3.0E-26 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 SUPERFAMILY SSF56601 357 781 4.0E-106 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_19335 a01e0a5613ba17a4d35859a2b5e5c71b 840 Gene3D G3DSA:3.30.2060.10 106 195 2.6E-269 T 13-10-2018 CS348_07530 a4d9a34cb619f7231eec1402569d81e4 400 Pfam PF07670 Nucleoside recognition 92 189 1.7E-7 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CS348_07530 a4d9a34cb619f7231eec1402569d81e4 400 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 4.9E-21 T 13-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 CS348_07530 a4d9a34cb619f7231eec1402569d81e4 400 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 398 3.0E-147 T 13-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 CS348_07530 a4d9a34cb619f7231eec1402569d81e4 400 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 398 3.0E-59 T 13-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 CS348_04495 a9e39dd26f0aa88dd04dfc4732527c47 165 Pfam PF17283 SprT-like zinc ribbon domain 126 163 7.1E-9 T 13-10-2018 IPR035240 SprT-like, zinc ribbon domain CS348_04495 a9e39dd26f0aa88dd04dfc4732527c47 165 SMART SM00731 16 165 5.7E-62 T 13-10-2018 IPR006640 SprT-like CS348_04495 a9e39dd26f0aa88dd04dfc4732527c47 165 Pfam PF10263 SprT-like family 21 118 1.2E-16 T 13-10-2018 IPR006640 SprT-like CS348_04495 a9e39dd26f0aa88dd04dfc4732527c47 165 Hamap MF_00746 Protein SprT [sprT]. 12 165 39.438 T 13-10-2018 IPR023483 Uncharacterised protein family SprT CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 SUPERFAMILY SSF54631 177 314 1.95E-21 T 13-10-2018 CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 Pfam PF03471 Transporter associated domain 329 404 5.7E-19 T 13-10-2018 IPR005170 Transporter-associated domain CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 SUPERFAMILY SSF56176 325 407 1.96E-21 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 Gene3D G3DSA:3.10.580.10 186 315 2.4E-41 T 13-10-2018 CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 Pfam PF00571 CBS domain 263 311 6.8E-5 T 13-10-2018 IPR000644 CBS domain CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 Gene3D G3DSA:3.30.465.10 324 403 3.3E-28 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 SMART SM01091 327 405 2.1E-25 T 13-10-2018 IPR005170 Transporter-associated domain CS348_06405 62c55ed730755e3ef0f387bba354dfc0 413 Pfam PF01595 Domain of unknown function DUF21 2 169 8.5E-49 T 13-10-2018 IPR002550 CNNM, transmembrane domain CS348_15075 f8d846632c18b15a3478712928bdf6d2 109 Pfam PF04358 DsrC like protein 4 109 2.9E-46 T 13-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE CS348_15075 f8d846632c18b15a3478712928bdf6d2 109 Gene3D G3DSA:3.30.1420.10 1 38 1.3E-10 T 13-10-2018 CS348_15075 f8d846632c18b15a3478712928bdf6d2 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 4 109 6.8E-50 T 13-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE CS348_15075 f8d846632c18b15a3478712928bdf6d2 109 SUPERFAMILY SSF69721 2 109 5.75E-42 T 13-10-2018 IPR025526 DsrC-like domain superfamily CS348_15075 f8d846632c18b15a3478712928bdf6d2 109 Gene3D G3DSA:1.10.10.370 39 109 9.8E-33 T 13-10-2018 CS348_15075 f8d846632c18b15a3478712928bdf6d2 109 PIRSF PIRSF006223 2 109 2.9E-47 T 13-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 SUPERFAMILY SSF47364 188 266 1.83E-22 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 SUPERFAMILY SSF52540 280 487 1.23E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 SMART SM00382 286 477 6.4E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 SMART SM00963 193 273 1.2E-23 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 Gene3D G3DSA:1.20.120.140 190 486 3.0E-117 T 13-10-2018 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 SMART SM00962 287 488 5.0E-126 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 Pfam PF02881 SRP54-type protein, helical bundle domain 204 269 3.8E-13 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 Pfam PF00448 SRP54-type protein, GTPase domain 287 487 1.1E-79 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 216 487 8.0E-116 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 461 474 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 Gene3D G3DSA:3.40.50.300 284 476 3.0E-117 T 13-10-2018 CS348_01380 43100b4620ff88b204d614dd9771fdcd 491 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 216 488 65.86 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CS348_17955 29f97cd4338ec51b3e26ff2deab1432a 125 PIRSF PIRSF016789 2 123 9.8E-49 T 13-10-2018 IPR007401 Protein of unknown function DUF454 CS348_17955 29f97cd4338ec51b3e26ff2deab1432a 125 Pfam PF04304 Protein of unknown function (DUF454) 3 116 1.4E-40 T 13-10-2018 IPR007401 Protein of unknown function DUF454 CS348_11495 1001c97e36cdb17ec8e0020fecfe5af6 74 Pfam PF06667 Phage shock protein B 3 73 2.4E-31 T 13-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 CS348_11495 1001c97e36cdb17ec8e0020fecfe5af6 74 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 3.0E-32 T 13-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 CS348_00700 5ec2655f6945b751805df79c77ed3100 143 Gene3D G3DSA:3.40.250.10 25 142 1.1E-24 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_00700 5ec2655f6945b751805df79c77ed3100 143 Pfam PF00581 Rhodanese-like domain 43 133 6.4E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_00700 5ec2655f6945b751805df79c77ed3100 143 SUPERFAMILY SSF52821 15 142 2.23E-31 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_00700 5ec2655f6945b751805df79c77ed3100 143 SMART SM00450 40 138 4.7E-22 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_07355 ebaafcbad3e6626cb96bfc5cdead6bfe 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 269 8.6E-113 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 CS348_07355 ebaafcbad3e6626cb96bfc5cdead6bfe 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 271 9.6E-114 T 13-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 CS348_07355 ebaafcbad3e6626cb96bfc5cdead6bfe 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 274 3.9E-32 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_07355 ebaafcbad3e6626cb96bfc5cdead6bfe 277 Gene3D G3DSA:1.10.3720.10 13 272 1.0E-69 T 13-10-2018 IPR035906 MetI-like superfamily CS348_07355 ebaafcbad3e6626cb96bfc5cdead6bfe 277 SUPERFAMILY SSF161098 16 264 1.57E-57 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11425 d022fa5c5a99e6c71c872c80761a6785 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 2.1E-17 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_11425 d022fa5c5a99e6c71c872c80761a6785 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 1.1E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_11425 d022fa5c5a99e6c71c872c80761a6785 330 SUPERFAMILY SSF52540 3 265 2.19E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11425 d022fa5c5a99e6c71c872c80761a6785 330 Pfam PF00005 ABC transporter 24 187 7.1E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_11425 d022fa5c5a99e6c71c872c80761a6785 330 Gene3D G3DSA:3.40.50.300 2 329 1.8E-75 T 13-10-2018 CS348_11425 d022fa5c5a99e6c71c872c80761a6785 330 SMART SM00382 32 245 3.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_07305 c7a8d8214134e019323b6c859cf83703 164 SUPERFAMILY SSF143414 3 88 4.71E-23 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_07305 c7a8d8214134e019323b6c859cf83703 164 Pfam PF00936 BMC domain 4 79 7.6E-21 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07305 c7a8d8214134e019323b6c859cf83703 164 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 54 1.0E-9 T 13-10-2018 CS348_07305 c7a8d8214134e019323b6c859cf83703 164 Gene3D G3DSA:3.30.70.1710 1 106 2.1E-26 T 13-10-2018 CS348_07305 c7a8d8214134e019323b6c859cf83703 164 Pfam PF16365 Ethanolamine utilization protein EutK C-terminus 107 161 3.3E-39 T 13-10-2018 IPR032298 Ethanolamine utilization protein EutK, C-terminal CS348_07305 c7a8d8214134e019323b6c859cf83703 164 SMART SM00877 3 79 2.3E-25 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07305 c7a8d8214134e019323b6c859cf83703 164 Gene3D G3DSA:1.10.10.10 107 164 1.9E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_07305 c7a8d8214134e019323b6c859cf83703 164 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 13-10-2018 IPR020808 Bacterial microcompartments protein, conserved site CS348_10110 1d570d727e9919c4a16bebcd6e465356 116 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 12 101 2.0E-47 T 13-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 CS348_10110 1d570d727e9919c4a16bebcd6e465356 116 Pfam PF05247 Flagellar transcriptional activator (FlhD) 4 103 9.9E-42 T 13-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 CS348_10110 1d570d727e9919c4a16bebcd6e465356 116 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 4 107 28.606 T 13-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 CS348_10110 1d570d727e9919c4a16bebcd6e465356 116 Gene3D G3DSA:1.10.4000.10 4 116 8.7E-50 T 13-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily CS348_10110 1d570d727e9919c4a16bebcd6e465356 116 SUPERFAMILY SSF63592 4 101 9.02E-40 T 13-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily CS348_16515 d46ce24410f1adb4cd38180161549778 239 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 231 6.6E-69 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 CS348_16515 d46ce24410f1adb4cd38180161549778 239 Pfam PF04973 Nicotinamide mononucleotide transporter 23 226 4.8E-50 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 CS348_03255 57801e28716676e261f25f1fdbde4ec2 69 Pfam PF08971 Glycogen synthesis protein 3 69 1.7E-40 T 13-10-2018 IPR015065 Surface composition regulator CS348_03255 57801e28716676e261f25f1fdbde4ec2 69 SUPERFAMILY SSF109747 4 69 1.83E-42 T 13-10-2018 IPR036295 GlgS superfamily CS348_03255 57801e28716676e261f25f1fdbde4ec2 69 Hamap MF_00525 Surface composition regulator [glgS]. 3 62 21.785 T 13-10-2018 IPR015065 Surface composition regulator CS348_03255 57801e28716676e261f25f1fdbde4ec2 69 Gene3D G3DSA:1.20.970.20 3 69 2.0E-38 T 13-10-2018 IPR036295 GlgS superfamily CS348_03255 57801e28716676e261f25f1fdbde4ec2 69 ProDom PD054490 GLYCOGEN GLGS SYNTHESIS BIOSYNTHESIS DEPENDENT BIOSYNTHESIS RPOS 3D-STRUCTURE 14 69 4.0E-28 T 13-10-2018 IPR015065 Surface composition regulator CS348_09360 bbd797778c05aa0a375c6a27a7afd78f 155 Gene3D G3DSA:3.20.80.10 1 155 1.1E-38 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_09360 bbd797778c05aa0a375c6a27a7afd78f 155 Pfam PF06445 GyrI-like small molecule binding domain 1 152 2.1E-27 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain CS348_09360 bbd797778c05aa0a375c6a27a7afd78f 155 Hamap MF_01896 DNA gyrase inhibitor [sbmC]. 1 155 40.091 T 13-10-2018 IPR024911 DNA gyrase inhibitor GyrI GO:0008657 CS348_09360 bbd797778c05aa0a375c6a27a7afd78f 155 SUPERFAMILY SSF55136 1 155 6.28E-41 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily CS348_09360 bbd797778c05aa0a375c6a27a7afd78f 155 SMART SM00871 1 153 4.6E-30 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding CS348_12785 17d63ef94fc4114a4e84519759703fab 352 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 3 350 28.41 T 13-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 CS348_12785 17d63ef94fc4114a4e84519759703fab 352 Pfam PF03116 NQR2, RnfD, RnfE family 6 348 3.6E-108 T 13-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 CS348_12785 17d63ef94fc4114a4e84519759703fab 352 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 349 1.2E-147 T 13-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 CS348_00380 db09a155c66af9efd3b43204c1c4db09 231 Pfam PF02308 MgtC family 14 133 5.0E-38 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CS348_00380 db09a155c66af9efd3b43204c1c4db09 231 Gene3D G3DSA:3.30.70.260 141 231 9.4E-13 T 13-10-2018 CS348_00380 db09a155c66af9efd3b43204c1c4db09 231 PRINTS PR01837 MgtC/SapB protein signature 61 83 6.5E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CS348_00380 db09a155c66af9efd3b43204c1c4db09 231 PRINTS PR01837 MgtC/SapB protein signature 36 54 6.5E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CS348_00380 db09a155c66af9efd3b43204c1c4db09 231 PRINTS PR01837 MgtC/SapB protein signature 88 112 6.5E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CS348_00380 db09a155c66af9efd3b43204c1c4db09 231 PRINTS PR01837 MgtC/SapB protein signature 17 36 6.5E-47 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CS348_24400 a3afeb4fbe397a158dd8e8fea0cf8d81 622 Pfam PF02705 K+ potassium transporter 14 544 1.1E-206 T 13-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 CS348_24400 a3afeb4fbe397a158dd8e8fea0cf8d81 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.49 T 13-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup CS348_24400 a3afeb4fbe397a158dd8e8fea0cf8d81 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 550 1.9E-198 T 13-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 CS348_04875 4613c118bafec79d95037e22d6901a7f 409 Pfam PF03222 Tryptophan/tyrosine permease family 16 380 1.1E-9 T 13-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 330 346 - T 13-10-2018 IPR013793 Porin, Gram-negative type, conserved site CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 SUPERFAMILY SSF56935 22 378 2.41E-77 T 13-10-2018 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 Pfam PF00267 Gram-negative porin 27 378 6.3E-153 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 2.2E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 2.2E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00183 E.coli/Salmonella-type porin signature 94 116 2.2E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00183 E.coli/Salmonella-type porin signature 281 300 2.2E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00183 E.coli/Salmonella-type porin signature 148 170 2.2E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00183 E.coli/Salmonella-type porin signature 243 260 2.2E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 330 347 4.4E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 237 249 4.4E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 94 104 4.4E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 4.4E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 150 161 4.4E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_08325 4f3762c9ff9961dd3966bb5762476ffa 378 Gene3D G3DSA:2.40.160.10 22 378 6.5E-160 T 13-10-2018 IPR023614 Porin domain superfamily CS348_12750 0add8219973499490cfd8f0d826d5af0 371 SUPERFAMILY SSF51735 25 217 1.72E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_12750 0add8219973499490cfd8f0d826d5af0 371 Gene3D G3DSA:3.30.360.10 152 355 5.3E-137 T 13-10-2018 CS348_12750 0add8219973499490cfd8f0d826d5af0 371 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 30 146 2.6E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_12750 0add8219973499490cfd8f0d826d5af0 371 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 159 266 2.4E-18 T 13-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 CS348_12750 0add8219973499490cfd8f0d826d5af0 371 Gene3D G3DSA:3.40.50.720 30 341 5.3E-137 T 13-10-2018 CS348_02650 b4ac281bec5278bd3980cc74cae933b9 191 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 10 183 3.9E-53 T 13-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related CS348_02650 b4ac281bec5278bd3980cc74cae933b9 191 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 185 27.441 T 13-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 CS348_02650 b4ac281bec5278bd3980cc74cae933b9 191 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 6 182 2.5E-52 T 13-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 CS348_02650 b4ac281bec5278bd3980cc74cae933b9 191 PIRSF PIRSF028513 1 186 1.9E-40 T 13-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 CS348_02650 b4ac281bec5278bd3980cc74cae933b9 191 Gene3D G3DSA:2.60.450.10 59 191 1.9E-54 T 13-10-2018 CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 Gene3D G3DSA:3.40.190.10 27 243 4.9E-92 T 13-10-2018 CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 Gene3D G3DSA:3.40.190.10 111 204 4.9E-92 T 13-10-2018 CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 47 60 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 245 2.6E-65 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 SMART SM00062 24 244 7.4E-71 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 SMART SM00079 24 246 0.002 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CS348_21865 2820845dc5811eb485d2f8ec3c755d8f 246 SUPERFAMILY SSF53850 1 245 1.06E-67 T 13-10-2018 CS348_11800 4ec55aba3df29bcdd63101e258ec9312 215 Gene3D G3DSA:1.10.3720.10 4 214 1.4E-38 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11800 4ec55aba3df29bcdd63101e258ec9312 215 SUPERFAMILY SSF161098 13 198 1.7E-30 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11800 4ec55aba3df29bcdd63101e258ec9312 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 213 7.2E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_11800 4ec55aba3df29bcdd63101e258ec9312 215 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 107 7.3E-23 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_18070 d36a2a00943b910585377d84966b61ae 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CS348_18070 d36a2a00943b910585377d84966b61ae 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 47 2.5E-16 T 13-10-2018 CS348_18070 d36a2a00943b910585377d84966b61ae 152 SMART SM00344 2 111 8.8E-38 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CS348_18070 d36a2a00943b910585377d84966b61ae 152 Pfam PF01037 Lrp/AsnC ligand binding domain 68 142 7.4E-22 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CS348_18070 d36a2a00943b910585377d84966b61ae 152 SUPERFAMILY SSF54909 62 151 6.44E-21 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_18070 d36a2a00943b910585377d84966b61ae 152 Gene3D G3DSA:1.10.10.10 3 54 3.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18070 d36a2a00943b910585377d84966b61ae 152 Gene3D G3DSA:3.30.70.920 55 139 3.9E-25 T 13-10-2018 CS348_18070 d36a2a00943b910585377d84966b61ae 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 7.0E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_18070 d36a2a00943b910585377d84966b61ae 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 7.0E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_18070 d36a2a00943b910585377d84966b61ae 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 7.0E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_18070 d36a2a00943b910585377d84966b61ae 152 SUPERFAMILY SSF46785 1 61 2.69E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04490 ff1d582c3111c826ac0f6babd3b9c9f2 235 SUPERFAMILY SSF54060 26 230 2.59E-88 T 13-10-2018 CS348_04490 ff1d582c3111c826ac0f6babd3b9c9f2 235 Pfam PF04231 Endonuclease I 44 229 1.0E-46 T 13-10-2018 IPR007346 Endonuclease I GO:0004518 CS348_22060 672f4649933146615d223a6095c46a50 163 ProDom PD016515 MINOR FIMBRIAL SUBUNIT PLASMID FIMBRIA K88 CSHD LDAF FAEF CLPF 1 150 4.0E-46 T 13-10-2018 IPR035191 K88 minor fimbrial subunit FaeF CS348_22060 672f4649933146615d223a6095c46a50 163 Pfam PF17547 Family of unknown function (DUF5462) 7 159 1.2E-53 T 13-10-2018 IPR035191 K88 minor fimbrial subunit FaeF CS348_19535 2e9fef546c2a8213e8ec2f72ad74f022 263 Pfam PF11453 Protein of unknown function (DUF2950) 20 260 1.2E-80 T 13-10-2018 IPR021556 Protein of unknown function DUF2950 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 3.0E-150 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 Gene3D G3DSA:3.30.930.10 1 214 3.7E-111 T 13-10-2018 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 SUPERFAMILY SSF55681 8 292 4.47E-134 T 13-10-2018 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 Gene3D G3DSA:1.20.58.180 215 297 5.1E-34 T 13-10-2018 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 6.4E-71 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 6.4E-71 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 6.4E-71 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 6.4E-71 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 6.4E-71 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 6.4E-71 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.814 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00940 3ad0f1c3073b30d4e24c137ccb8697b7 303 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 8 301 7.8E-178 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_16455 e9fb4982204660e22584beee1653a563 302 Pfam PF09935 Protein of unknown function (DUF2167) 53 285 7.3E-83 T 13-10-2018 IPR018682 Protein of unknown function DUF2167, membrane CS348_22390 2f3489936ee2e993a29129da63740188 425 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 380 395 1.7E-21 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_22390 2f3489936ee2e993a29129da63740188 425 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 56 76 1.7E-21 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_22390 2f3489936ee2e993a29129da63740188 425 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 281 302 1.7E-21 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_22390 2f3489936ee2e993a29129da63740188 425 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 395 415 1.7E-21 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_22390 2f3489936ee2e993a29129da63740188 425 Pfam PF13437 HlyD family secretion protein 267 383 3.9E-18 T 13-10-2018 CS348_22390 2f3489936ee2e993a29129da63740188 425 Gene3D G3DSA:2.40.50.100 48 105 3.5E-6 T 13-10-2018 CS348_22390 2f3489936ee2e993a29129da63740188 425 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 9 415 2.5E-65 T 13-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 CS348_22390 2f3489936ee2e993a29129da63740188 425 Gene3D G3DSA:2.40.30.170 272 397 5.6E-7 T 13-10-2018 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 8 524 4.7E-255 T 13-10-2018 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 KEGG: 00500+2.7.1.208 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 Pfam PF00367 phosphotransferase system, EIIB 455 486 1.3E-15 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 420 511 2.8E-26 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 464 481 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 Pfam PF02378 Phosphotransferase system, EIIC 19 361 9.7E-85 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 Gene3D G3DSA:3.30.1360.60 449 527 2.1E-25 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 70 372 1.0E-95 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 CS348_12735 4471515547968184c22c749ca5c6a4ab 530 SUPERFAMILY SSF55604 454 526 3.01E-21 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_17345 ea32f57bdab99c94305d1bd98b03f658 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 5.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_17345 ea32f57bdab99c94305d1bd98b03f658 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 5.0E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_17345 ea32f57bdab99c94305d1bd98b03f658 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CS348_17345 ea32f57bdab99c94305d1bd98b03f658 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 56 4.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_17345 ea32f57bdab99c94305d1bd98b03f658 193 SUPERFAMILY SSF46689 3 75 1.2E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_17345 ea32f57bdab99c94305d1bd98b03f658 193 Gene3D G3DSA:1.10.357.10 1 193 2.1E-83 T 13-10-2018 CS348_14855 4ef3f19a62c06de45ff0cb5e1f9b6bdc 502 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 491 3.1E-236 T 13-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 CS348_14855 4ef3f19a62c06de45ff0cb5e1f9b6bdc 502 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site CS348_14855 4ef3f19a62c06de45ff0cb5e1f9b6bdc 502 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site CS348_14855 4ef3f19a62c06de45ff0cb5e1f9b6bdc 502 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 2.0E-132 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_14855 4ef3f19a62c06de45ff0cb5e1f9b6bdc 502 Gene3D G3DSA:1.20.1730.10 24 496 5.8E-91 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CS348_14855 4ef3f19a62c06de45ff0cb5e1f9b6bdc 502 Pfam PF00474 Sodium:solute symporter family 35 437 7.5E-146 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_14765 e469fcc79ee1d06f23954d754b2f8348 277 Gene3D G3DSA:3.40.50.10610 125 277 8.4E-61 T 13-10-2018 CS348_14765 e469fcc79ee1d06f23954d754b2f8348 277 Gene3D G3DSA:3.40.50.10610 29 124 3.3E-37 T 13-10-2018 CS348_14765 e469fcc79ee1d06f23954d754b2f8348 277 Pfam PF03783 Curli production assembly/transport component CsgG 41 255 4.3E-80 T 13-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 CS348_15975 4c29b3d919f3a650821c18a0bb218628 206 SUPERFAMILY SSF46689 7 86 1.55E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_15975 4c29b3d919f3a650821c18a0bb218628 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 5.4E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_15975 4c29b3d919f3a650821c18a0bb218628 206 SUPERFAMILY SSF48498 102 180 2.22E-5 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_15975 4c29b3d919f3a650821c18a0bb218628 206 Gene3D G3DSA:1.10.357.10 6 193 3.8E-48 T 13-10-2018 CS348_20700 8b5d246304cf84ec83a71b199a0642cb 101 Pfam PF09339 IclR helix-turn-helix domain 12 57 4.0E-6 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_20700 8b5d246304cf84ec83a71b199a0642cb 101 Gene3D G3DSA:1.10.10.10 6 80 4.7E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20700 8b5d246304cf84ec83a71b199a0642cb 101 SUPERFAMILY SSF46785 9 80 1.05E-10 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_20900 24bb0e6f1ac53dddf7f56780411206f2 241 Gene3D G3DSA:3.40.50.12740 10 213 6.3E-14 T 13-10-2018 CS348_20900 24bb0e6f1ac53dddf7f56780411206f2 241 SMART SM00421 152 209 3.0E-12 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20900 24bb0e6f1ac53dddf7f56780411206f2 241 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 208 5.5E-10 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_20900 24bb0e6f1ac53dddf7f56780411206f2 241 SUPERFAMILY SSF46894 145 210 1.36E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 Gene3D G3DSA:3.40.50.300 89 358 6.0E-111 T 13-10-2018 CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 SMART SM00382 154 335 2.2E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 TIGRFAM TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase 19 431 3.9E-194 T 13-10-2018 IPR013380 ATPase, type III secretion system, H+-transporting GO:0005524|GO:0005737|GO:0006754|GO:0030254|GO:0030257|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 13 431 1.6E-151 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 SUPERFAMILY SSF52540 89 356 4.38E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 Gene3D G3DSA:1.20.1270.330 359 433 1.3E-32 T 13-10-2018 CS348_13000 16e8a44c7178102f0ab50c91b77b9608 433 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 142 351 7.4E-69 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_08280 06b63618f6f05a776941805a05c5a682 294 Gene3D G3DSA:1.20.120.530 150 289 1.1E-18 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_08280 06b63618f6f05a776941805a05c5a682 294 SUPERFAMILY SSF46785 81 150 3.63E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_08280 06b63618f6f05a776941805a05c5a682 294 SMART SM00895 156 280 7.5E-9 T 13-10-2018 IPR011711 GntR, C-terminal CS348_08280 06b63618f6f05a776941805a05c5a682 294 SUPERFAMILY SSF48008 152 280 4.71E-18 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_08280 06b63618f6f05a776941805a05c5a682 294 Pfam PF07729 FCD domain 156 278 1.3E-19 T 13-10-2018 IPR011711 GntR, C-terminal CS348_08280 06b63618f6f05a776941805a05c5a682 294 Gene3D G3DSA:1.10.10.10 75 146 6.4E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08280 06b63618f6f05a776941805a05c5a682 294 Pfam PF00392 Bacterial regulatory proteins, gntR family 85 146 1.9E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_08280 06b63618f6f05a776941805a05c5a682 294 SMART SM00345 87 146 6.5E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_19300 70beb9e0b2365d08e6e9f15c76ec6d6f 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 13-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 CS348_19300 70beb9e0b2365d08e6e9f15c76ec6d6f 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 37.154 T 13-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 CS348_19300 70beb9e0b2365d08e6e9f15c76ec6d6f 114 Gene3D G3DSA:2.60.300.12 9 114 4.7E-34 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_19300 70beb9e0b2365d08e6e9f15c76ec6d6f 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 4.5E-39 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 CS348_19300 70beb9e0b2365d08e6e9f15c76ec6d6f 114 SUPERFAMILY SSF89360 8 103 2.75E-31 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CS348_19300 70beb9e0b2365d08e6e9f15c76ec6d6f 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 1.0E-20 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CS348_09810 29005c26debc1b8d342f8c95b43d1505 570 Gene3D G3DSA:3.30.70.270 387 562 5.0E-53 T 13-10-2018 CS348_09810 29005c26debc1b8d342f8c95b43d1505 570 Pfam PF17151 Periplasmic sensor domain 41 226 4.3E-85 T 13-10-2018 IPR033416 Periplasmic sensor domain CHASE7 CS348_09810 29005c26debc1b8d342f8c95b43d1505 570 Pfam PF00990 Diguanylate cyclase, GGDEF domain 398 557 1.1E-46 T 13-10-2018 IPR000160 GGDEF domain CS348_09810 29005c26debc1b8d342f8c95b43d1505 570 SMART SM00267 387 561 1.2E-64 T 13-10-2018 IPR000160 GGDEF domain CS348_09810 29005c26debc1b8d342f8c95b43d1505 570 SUPERFAMILY SSF55073 403 560 2.12E-44 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_09810 29005c26debc1b8d342f8c95b43d1505 570 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 394 560 1.4E-59 T 13-10-2018 IPR000160 GGDEF domain CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 Pfam PF03222 Tryptophan/tyrosine permease family 3 392 4.4E-134 T 13-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 386 2.9E-138 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 221 240 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 148 168 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 337 356 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 82 102 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 37 56 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 182 204 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 10 33 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 282 301 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 PRINTS PR00166 Aromatic amino acid permease signature 316 334 1.2E-90 T 13-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 13-10-2018 IPR013061 Tryptophan/tryrosine permease, conserved site CS348_10050 ecd8b419e63029ea5f8d3243bae0143d 405 Gene3D G3DSA:1.20.1740.10 2 401 6.5E-6 T 13-10-2018 CS348_21830 811b03932bc53a1d131ea6733f2f4106 439 SMART SM00646 248 407 2.9E-73 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CS348_21830 811b03932bc53a1d131ea6733f2f4106 439 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 188 407 7.5E-48 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 CS348_21830 811b03932bc53a1d131ea6733f2f4106 439 Gene3D G3DSA:3.40.630.40 175 418 1.6E-71 T 13-10-2018 CS348_21830 811b03932bc53a1d131ea6733f2f4106 439 SUPERFAMILY SSF53187 186 410 5.02E-53 T 13-10-2018 CS348_21830 811b03932bc53a1d131ea6733f2f4106 439 Gene3D G3DSA:2.60.40.3500 16 126 2.0E-5 T 13-10-2018 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 149 218 2.1E-5 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 SUPERFAMILY SSF81464 29 116 8.34E-24 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 Gene3D G3DSA:1.10.287.90 27 112 5.1E-35 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 239 9.6E-124 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 PIRSF PIRSF000292 1 313 3.5E-134 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 Gene3D G3DSA:2.60.40.420 113 282 4.4E-64 T 13-10-2018 IPR008972 Cupredoxin CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 Pfam PF06481 COX Aromatic Rich Motif 239 285 5.9E-19 T 13-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 CS348_18160 28e8e2e638f3556353f1cecb1c3cd411 318 SUPERFAMILY SSF49503 120 282 1.1E-54 T 13-10-2018 IPR008972 Cupredoxin CS348_23260 e8832484dc916ee9933aa76b32e838a1 444 Pfam PF13347 MFS/sugar transport protein 10 428 2.0E-104 T 13-10-2018 CS348_23260 e8832484dc916ee9933aa76b32e838a1 444 SUPERFAMILY SSF103473 14 425 8.5E-37 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_23260 e8832484dc916ee9933aa76b32e838a1 444 Gene3D G3DSA:1.20.1250.20 9 419 1.4E-24 T 13-10-2018 CS348_23260 e8832484dc916ee9933aa76b32e838a1 444 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 8 442 1.2E-108 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_12570 e66f10b2ed24d32a7b29aeea0ee376de 236 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 61 233 5.4E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_12570 e66f10b2ed24d32a7b29aeea0ee376de 236 SUPERFAMILY SSF161098 40 223 7.46E-36 T 13-10-2018 IPR035906 MetI-like superfamily CS348_12570 e66f10b2ed24d32a7b29aeea0ee376de 236 Gene3D G3DSA:1.10.3720.10 40 233 2.5E-29 T 13-10-2018 IPR035906 MetI-like superfamily CS348_03605 e7da7afd5cc9c49845f768c2346e1b01 470 SUPERFAMILY SSF51556 3 467 5.85E-184 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_03605 e7da7afd5cc9c49845f768c2346e1b01 470 Gene3D G3DSA:3.20.20.140 7 467 1.0E-207 T 13-10-2018 CS348_03605 e7da7afd5cc9c49845f768c2346e1b01 470 Hamap MF_00675 Uronate isomerase [uxaC]. 2 469 50.666 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 CS348_03605 e7da7afd5cc9c49845f768c2346e1b01 470 Pfam PF02614 Glucuronate isomerase 1 467 2.7E-224 T 13-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 CS348_03605 e7da7afd5cc9c49845f768c2346e1b01 470 Gene3D G3DSA:1.10.2020.10 46 138 1.0E-207 T 13-10-2018 CS348_01435 f6a243ee57b1b2ed0265d67d37bc6879 237 Gene3D G3DSA:3.40.50.300 1 237 2.9E-66 T 13-10-2018 CS348_01435 f6a243ee57b1b2ed0265d67d37bc6879 237 Pfam PF00005 ABC transporter 21 165 8.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01435 f6a243ee57b1b2ed0265d67d37bc6879 237 SMART SM00382 30 216 6.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01435 f6a243ee57b1b2ed0265d67d37bc6879 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01435 f6a243ee57b1b2ed0265d67d37bc6879 237 PIRSF PIRSF039137 1 237 1.9E-104 T 13-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 CS348_01435 f6a243ee57b1b2ed0265d67d37bc6879 237 SUPERFAMILY SSF52540 4 234 4.02E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16055 835853d27bed335d5075d4711ae990cf 284 Gene3D G3DSA:3.40.50.620 34 283 8.5E-83 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16055 835853d27bed335d5075d4711ae990cf 284 SUPERFAMILY SSF52402 36 277 2.37E-80 T 13-10-2018 CS348_16055 835853d27bed335d5075d4711ae990cf 284 Pfam PF01012 Electron transfer flavoprotein domain 67 240 8.9E-44 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_16055 835853d27bed335d5075d4711ae990cf 284 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 190 210 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CS348_16055 835853d27bed335d5075d4711ae990cf 284 SMART SM00893 58 246 2.0E-57 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_16055 835853d27bed335d5075d4711ae990cf 284 PIRSF PIRSF000090 36 284 3.1E-94 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CS348_20075 b2730e0b18cc550a1cc071bb49fc6b30 446 Pfam PF03390 2-hydroxycarboxylate transporter family 23 440 2.6E-149 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 CS348_20075 b2730e0b18cc550a1cc071bb49fc6b30 446 PIRSF PIRSF005348 3 446 3.0E-157 T 13-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 CS348_20075 b2730e0b18cc550a1cc071bb49fc6b30 446 TIGRFAM TIGR00783 ccs: citrate carrier protein, CCS family 18 441 8.6E-179 T 13-10-2018 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes CS348_01645 fa6a7e0a8c62dfbd1c07a2bafa5bd844 75 Pfam PF04023 FeoA domain 8 71 4.4E-9 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CS348_01645 fa6a7e0a8c62dfbd1c07a2bafa5bd844 75 SMART SM00899 1 72 7.9E-9 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CS348_01645 fa6a7e0a8c62dfbd1c07a2bafa5bd844 75 Gene3D G3DSA:2.30.30.90 1 75 1.3E-32 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain CS348_01645 fa6a7e0a8c62dfbd1c07a2bafa5bd844 75 SUPERFAMILY SSF50037 2 73 2.52E-17 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 Gene3D G3DSA:3.10.580.10 193 346 1.6E-35 T 13-10-2018 CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 SMART SM01091 346 426 3.2E-30 T 13-10-2018 IPR005170 Transporter-associated domain CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 SUPERFAMILY SSF54631 200 335 6.96E-22 T 13-10-2018 CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 SUPERFAMILY SSF56176 344 429 1.23E-24 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 Gene3D G3DSA:3.30.465.10 347 427 1.1E-30 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 Pfam PF03471 Transporter associated domain 347 425 7.6E-23 T 13-10-2018 IPR005170 Transporter-associated domain CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 Pfam PF00571 CBS domain 284 333 0.0025 T 13-10-2018 IPR000644 CBS domain CS348_21570 77a90b039b25743f58da7efbbbe3f17d 447 Pfam PF01595 Domain of unknown function DUF21 6 197 3.1E-38 T 13-10-2018 IPR002550 CNNM, transmembrane domain CS348_02145 d5a751b78cbe6cbca56e3ce9ff95db53 122 Pfam PF09350 Domain of unknown function (DUF1992) 7 71 1.5E-23 T 13-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain CS348_11255 bfe8317ab59b21794e996f1846fd3175 206 Pfam PF01300 Telomere recombination 23 198 5.4E-46 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CS348_11255 bfe8317ab59b21794e996f1846fd3175 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 202 2.0E-77 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CS348_11255 bfe8317ab59b21794e996f1846fd3175 206 SUPERFAMILY SSF55821 1 204 6.41E-66 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CS348_11255 bfe8317ab59b21794e996f1846fd3175 206 Gene3D G3DSA:3.90.870.10 1 206 7.6E-72 T 13-10-2018 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 32 269 6.5E-70 T 13-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 Gene3D G3DSA:1.20.1280.240 248 363 1.8E-50 T 13-10-2018 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 SUPERFAMILY SSF140591 65 257 1.37E-46 T 13-10-2018 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 Gene3D G3DSA:1.10.150.630 159 247 3.9E-37 T 13-10-2018 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 Pfam PF07201 HrpJ-like domain 51 211 3.2E-43 T 13-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 50 70 2.5E-71 T 13-10-2018 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 111 130 2.5E-71 T 13-10-2018 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 230 250 2.5E-71 T 13-10-2018 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 260 277 2.5E-71 T 13-10-2018 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 175 193 2.5E-71 T 13-10-2018 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 CS348_05535 c548ea6426ef4bcc2c680964819be7f7 372 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 204 216 2.5E-71 T 13-10-2018 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 CS348_21435 2260043484b23563699ff81c30d7fbec 408 Gene3D G3DSA:1.20.1250.20 12 200 2.2E-18 T 13-10-2018 CS348_21435 2260043484b23563699ff81c30d7fbec 408 Gene3D G3DSA:1.20.1250.20 221 407 7.5E-23 T 13-10-2018 CS348_21435 2260043484b23563699ff81c30d7fbec 408 SUPERFAMILY SSF103473 13 403 4.19E-48 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_21435 2260043484b23563699ff81c30d7fbec 408 Pfam PF07690 Major Facilitator Superfamily 24 288 3.0E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_19730 503871cd8cc1296cddd6a41d49fe272f 121 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 36 118 1.1E-28 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CS348_19730 503871cd8cc1296cddd6a41d49fe272f 121 Pfam PF04999 Cell division protein FtsL 25 119 1.8E-35 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CS348_19730 503871cd8cc1296cddd6a41d49fe272f 121 Hamap MF_00910 Cell division protein FtsL [ftsL]. 35 118 16.698 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CS348_09130 1dce41a5dae0d66424d43fb9812bc130 407 Pfam PF00534 Glycosyl transferases group 1 220 389 2.1E-17 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_09130 1dce41a5dae0d66424d43fb9812bc130 407 TIGRFAM TIGR04007 wcaI: colanic acid biosynthesis glycosyltransferase WcaI 1 407 7.9E-270 T 13-10-2018 IPR023910 Colanic acid biosynthesis, glycosyl transferase, WcaI CS348_09130 1dce41a5dae0d66424d43fb9812bc130 407 Pfam PF13579 Glycosyl transferase 4-like domain 15 204 8.5E-29 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CS348_09130 1dce41a5dae0d66424d43fb9812bc130 407 Gene3D G3DSA:3.40.50.2000 1 214 6.5E-14 T 13-10-2018 CS348_09130 1dce41a5dae0d66424d43fb9812bc130 407 Gene3D G3DSA:3.40.50.2000 215 395 2.1E-16 T 13-10-2018 CS348_09130 1dce41a5dae0d66424d43fb9812bc130 407 SUPERFAMILY SSF53756 2 403 3.54E-39 T 13-10-2018 CS348_09655 3f27b2bbb208375cd1ab970a2298e57e 349 PIRSF PIRSF005508 1 349 1.1E-116 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 CS348_09655 3f27b2bbb208375cd1ab970a2298e57e 349 Gene3D G3DSA:1.20.1530.20 4 341 2.5E-17 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_09655 3f27b2bbb208375cd1ab970a2298e57e 349 Pfam PF01758 Sodium Bile acid symporter family 57 251 4.3E-36 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 CS348_09655 3f27b2bbb208375cd1ab970a2298e57e 349 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 11 338 4.0E-117 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 13-10-2018 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 310 9.3E-32 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 Gene3D G3DSA:3.40.50.2300 67 309 2.6E-67 T 13-10-2018 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 SUPERFAMILY SSF47413 5 62 5.63E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 Gene3D G3DSA:1.10.260.40 1 62 4.3E-16 T 13-10-2018 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 Gene3D G3DSA:3.40.50.2300 161 292 2.6E-67 T 13-10-2018 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 SUPERFAMILY SSF53822 63 316 2.36E-62 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 6.0E-18 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_01525 2c44c5f9d8c55372960de37eba519a10 331 SMART SM00354 5 75 2.0E-26 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 Gene3D G3DSA:3.40.190.10 113 213 1.4E-94 T 13-10-2018 CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 SUPERFAMILY SSF53850 1 257 1.83E-66 T 13-10-2018 CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 Gene3D G3DSA:3.40.190.10 29 252 1.4E-94 T 13-10-2018 CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 SMART SM00062 27 256 7.2E-72 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 253 1.1E-101 T 13-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 CS348_07870 b435a15c658c763059d20e8a8e60a1df 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.5E-63 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_20630 a1c6f0ad70ccaeb6c4c7178c8f34c495 273 Pfam PF04233 Phage Mu protein F like protein 59 189 5.3E-29 T 13-10-2018 IPR006528 Phage head morphogenesis domain CS348_20630 a1c6f0ad70ccaeb6c4c7178c8f34c495 273 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 114 192 8.7E-15 T 13-10-2018 IPR006528 Phage head morphogenesis domain CS348_14620 b5560a3b9373b88f2aab0b86042823fe 402 SUPERFAMILY SSF103473 12 398 2.88E-53 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_14620 b5560a3b9373b88f2aab0b86042823fe 402 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 41.928 T 13-10-2018 IPR022855 Multidrug resistance protein MdtH CS348_14620 b5560a3b9373b88f2aab0b86042823fe 402 Gene3D G3DSA:1.20.1250.20 13 386 4.0E-47 T 13-10-2018 CS348_14620 b5560a3b9373b88f2aab0b86042823fe 402 Pfam PF07690 Major Facilitator Superfamily 211 388 8.1E-12 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_14620 b5560a3b9373b88f2aab0b86042823fe 402 Pfam PF07690 Major Facilitator Superfamily 20 187 4.2E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 SUPERFAMILY SSF52467 181 342 5.24E-59 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_24305 530b1bd017facdc5e95240456a34aac0 548 SUPERFAMILY SSF52518 1 173 2.46E-61 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_24305 530b1bd017facdc5e95240456a34aac0 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 165 6.2E-56 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 4.8E-218 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 Gene3D G3DSA:3.40.50.970 344 522 1.1E-122 T 13-10-2018 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 SUPERFAMILY SSF52518 357 546 1.97E-65 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_24305 530b1bd017facdc5e95240456a34aac0 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 9.2E-50 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 321 2.9E-43 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 Gene3D G3DSA:3.40.50.1220 186 343 1.1E-122 T 13-10-2018 CS348_24305 530b1bd017facdc5e95240456a34aac0 548 Gene3D G3DSA:3.40.50.970 1 174 6.1E-68 T 13-10-2018 CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 29 644 4.2E-266 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 SMART SM00729 376 626 3.3E-5 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 380 400 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 SUPERFAMILY SSF102114 358 656 8.11E-11 T 13-10-2018 CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 Gene3D G3DSA:3.80.30.20 375 618 9.1E-13 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 Pfam PF11842 Domain of unknown function (DUF3362) 594 711 7.1E-44 T 13-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 Pfam PF04055 Radical SAM superfamily 380 585 3.8E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 Pfam PF08497 Radical SAM N-terminal 29 379 1.9E-146 T 13-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal CS348_03410 698a0f911a97200b87c11c05ca9dfa49 739 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 29 646 50.943 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 CS348_03995 054836d6e94d007db9d0c9310889e94e 78 TIGRFAM TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family 2 76 1.3E-20 T 13-10-2018 IPR021676 Protein of unknown function DUF3262 CS348_03995 054836d6e94d007db9d0c9310889e94e 78 Pfam PF11660 Protein of unknown function (DUF3262) 1 76 4.0E-24 T 13-10-2018 IPR021676 Protein of unknown function DUF3262 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.6E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.6E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 PRINTS PR01401 Mutator MutT protein signature 77 90 4.4E-14 T 13-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 PRINTS PR01401 Mutator MutT protein signature 2 23 4.4E-14 T 13-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 Gene3D G3DSA:3.90.79.10 1 129 6.5E-40 T 13-10-2018 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 Pfam PF00293 NUDIX domain 6 125 6.4E-21 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 128 5.5E-61 T 13-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 CS348_19650 1794eafd72fdf5deae9216eed49024b3 131 SUPERFAMILY SSF55811 1 127 6.36E-36 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_06125 50ad068e4810f81869f95bf22f655845 427 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 9 420 2.3E-160 T 13-10-2018 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 CS348_06125 50ad068e4810f81869f95bf22f655845 427 Pfam PF00202 Aminotransferase class-III 17 420 5.1E-142 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_06125 50ad068e4810f81869f95bf22f655845 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 236 273 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_06125 50ad068e4810f81869f95bf22f655845 427 SUPERFAMILY SSF53383 20 423 2.66E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_06125 50ad068e4810f81869f95bf22f655845 427 Gene3D G3DSA:3.40.640.10 59 318 5.0E-166 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_06125 50ad068e4810f81869f95bf22f655845 427 PIRSF PIRSF000521 123 424 3.9E-44 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_06125 50ad068e4810f81869f95bf22f655845 427 PIRSF PIRSF000521 27 131 0.005 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_06125 50ad068e4810f81869f95bf22f655845 427 Gene3D G3DSA:3.90.1150.10 24 418 5.0E-166 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 PIRSF PIRSF002867 1 320 3.3E-107 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 Gene3D G3DSA:2.40.50.180 45 161 1.8E-19 T 13-10-2018 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 Pfam PF01584 CheW-like domain 22 163 9.2E-30 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 SMART SM00448 187 312 6.5E-12 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 Pfam PF00072 Response regulator receiver domain 190 311 3.8E-13 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 Gene3D G3DSA:2.30.30.40 36 155 1.8E-19 T 13-10-2018 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 SUPERFAMILY SSF52172 189 320 6.26E-22 T 13-10-2018 IPR011006 CheY-like superfamily CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 Gene3D G3DSA:3.40.50.2300 188 326 3.6E-24 T 13-10-2018 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 SMART SM00260 17 161 4.0E-12 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CS348_08075 02c65c0597bf3257840a5b40bf0c34cb 334 SUPERFAMILY SSF50341 18 165 1.44E-24 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CS348_09900 f1c362bd67cc62caf3c58d09a3e09390 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 17 104 1.1E-26 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CS348_09900 f1c362bd67cc62caf3c58d09a3e09390 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 1.5E-21 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CS348_09900 f1c362bd67cc62caf3c58d09a3e09390 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 1.5E-21 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CS348_09900 f1c362bd67cc62caf3c58d09a3e09390 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 33 49 1.5E-21 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CS348_09900 f1c362bd67cc62caf3c58d09a3e09390 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 3 104 2.2E-38 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CS348_09900 f1c362bd67cc62caf3c58d09a3e09390 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 5 104 17.887 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 CS348_25385 42abf87a03d7955cac3956edc111734a 100 TIGRFAM TIGR02762 TraL_TIGR: type IV conjugative transfer system protein TraL 6 98 7.4E-24 T 13-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 CS348_25385 42abf87a03d7955cac3956edc111734a 100 Pfam PF07178 TraL protein 8 98 1.1E-24 T 13-10-2018 IPR009838 Type IV conjugative transfer system, protein TraL GO:0000746|GO:0019867 CS348_25385 42abf87a03d7955cac3956edc111734a 100 PIRSF PIRSF003259 1 100 2.4E-27 T 13-10-2018 IPR016382 Pilus assembly, TraL GO:0009279|GO:0009297 CS348_23790 ff57822a5569eee5406a9710e2a9c3ea 167 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 166 16.343 T 13-10-2018 IPR007336 Der GTPase activator GO:0005096 CS348_23790 ff57822a5569eee5406a9710e2a9c3ea 167 Pfam PF04220 Der GTPase activator (YihI) 15 163 4.0E-55 T 13-10-2018 IPR007336 Der GTPase activator GO:0005096 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 Gene3D G3DSA:3.90.1150.10 10 415 2.1E-179 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 Pfam PF00202 Aminotransferase class-III 26 421 2.7E-129 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 421 5.3E-183 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 PIRSF PIRSF000521 26 423 1.6E-27 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 Gene3D G3DSA:3.40.640.10 61 330 2.1E-179 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 424 51.597 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 CS348_16370 f22de77ab8bb6e04066b175b51873052 429 SUPERFAMILY SSF53383 1 421 3.21E-135 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 Gene3D G3DSA:3.40.50.300 1 289 1.3E-116 T 13-10-2018 CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 13-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 SUPERFAMILY SSF52540 4 286 1.07E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 3.5E-29 T 13-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 3.5E-29 T 13-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 3.5E-29 T 13-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 3.5E-29 T 13-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 CS348_01860 20bbd2b3af53667cf58855165cae5e7a 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 3.5E-77 T 13-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 CS348_17075 7a6f6d479bceca992ed370ed3e396048 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.135 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CS348_17075 7a6f6d479bceca992ed370ed3e396048 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 121 1.1E-43 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CS348_17075 7a6f6d479bceca992ed370ed3e396048 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 2.9E-24 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 SUPERFAMILY SSF53807 26 298 4.41E-90 T 13-10-2018 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 Gene3D G3DSA:3.40.50.1980 186 305 5.1E-42 T 13-10-2018 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 Gene3D G3DSA:3.40.50.1980 28 185 2.0E-59 T 13-10-2018 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 Pfam PF01297 Zinc-uptake complex component A periplasmic 32 295 4.8E-73 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 73 92 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 54 72 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 210 228 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 255 273 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 29 50 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 233 250 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00691 Adhesin B signature 184 201 3.0E-36 T 13-10-2018 IPR006129 Adhesin B GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00690 Adhesin family signature 60 73 8.0E-42 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00690 Adhesin family signature 237 255 8.0E-42 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00690 Adhesin family signature 29 47 8.0E-42 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00690 Adhesin family signature 263 282 8.0E-42 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00690 Adhesin family signature 184 205 8.0E-42 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CS348_05725 c44ffc2994b969c3013da02b34a86aa0 305 PRINTS PR00690 Adhesin family signature 73 90 8.0E-42 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 CS348_17700 f418c449287328f035f6fce9df188ac1 172 Gene3D G3DSA:2.60.40.1090 27 172 6.8E-35 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_17700 f418c449287328f035f6fce9df188ac1 172 Pfam PF00419 Fimbrial protein 31 171 4.4E-17 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_17700 f418c449287328f035f6fce9df188ac1 172 SUPERFAMILY SSF49401 29 172 5.47E-29 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_07500 6aed4dae6cd59e1f29a26e4205fd3784 130 SUPERFAMILY SSF46955 5 81 3.94E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_07500 6aed4dae6cd59e1f29a26e4205fd3784 130 Pfam PF07037 Putative transcription regulator (DUF1323) 8 128 4.0E-54 T 13-10-2018 IPR010749 Protein of unknown function DUF1323 CS348_07500 6aed4dae6cd59e1f29a26e4205fd3784 130 Gene3D G3DSA:1.10.260.40 1 39 1.2E-5 T 13-10-2018 CS348_07500 6aed4dae6cd59e1f29a26e4205fd3784 130 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 8 129 1.0E-52 T 13-10-2018 IPR010749 Protein of unknown function DUF1323 CS348_00975 c4d5f5ae48501e8c4ea51c3db7cc8db7 95 Pfam PF08681 Protein of unknown function (DUF1778) 13 89 6.4E-25 T 13-10-2018 IPR014795 Vibrio phage ICP1, Orf50 CS348_00975 c4d5f5ae48501e8c4ea51c3db7cc8db7 95 Gene3D G3DSA:1.20.5.780 8 90 1.6E-10 T 13-10-2018 CS348_00975 c4d5f5ae48501e8c4ea51c3db7cc8db7 95 SUPERFAMILY SSF47598 11 86 1.8E-19 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 41.734 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 SUPERFAMILY SSF52172 1 108 8.68E-28 T 13-10-2018 IPR011006 CheY-like superfamily CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 SUPERFAMILY SSF52738 156 342 4.97E-76 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 Pfam PF01339 CheB methylesterase 159 336 1.5E-63 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 PIRSF PIRSF000876 1 346 5.0E-140 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 SMART SM00448 4 119 8.4E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 Gene3D G3DSA:3.40.50.2300 1 133 3.8E-32 T 13-10-2018 CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 Gene3D G3DSA:3.40.50.180 147 349 3.5E-86 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal CS348_10150 c9a37eabee3fdf538e81e538f4958e38 349 Pfam PF00072 Response regulator receiver domain 6 109 9.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_25395 4d3715af1060650886fe24677af197b5 213 Pfam PF03869 Arc-like DNA binding domain 130 165 2.4E-5 T 13-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 CS348_25395 4d3715af1060650886fe24677af197b5 213 Gene3D G3DSA:1.10.1220.10 126 168 8.2E-7 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CS348_25395 4d3715af1060650886fe24677af197b5 213 Gene3D G3DSA:1.10.1220.10 21 63 1.7E-5 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CS348_25395 4d3715af1060650886fe24677af197b5 213 SUPERFAMILY SSF47598 26 63 5.34E-5 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_25395 4d3715af1060650886fe24677af197b5 213 SUPERFAMILY SSF47598 126 166 1.33E-6 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.6E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.6E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.6E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.6E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 9.0E-19 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 Gene3D G3DSA:2.40.50.100 21 85 1.7E-30 T 13-10-2018 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.263 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 1.1E-43 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02720 a3e63be06cec204a097f2c50b6b442ef 85 SUPERFAMILY SSF110324 2 82 2.48E-34 T 13-10-2018 CS348_16855 2b21382b1da1762937c44dec881f3a42 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 4.1E-22 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA CS348_16855 2b21382b1da1762937c44dec881f3a42 250 SUPERFAMILY SSF56784 1 247 1.08E-63 T 13-10-2018 IPR036412 HAD-like superfamily CS348_16855 2b21382b1da1762937c44dec881f3a42 250 Gene3D G3DSA:3.40.50.1000 6 232 4.3E-84 T 13-10-2018 IPR023214 HAD superfamily CS348_16855 2b21382b1da1762937c44dec881f3a42 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 9.0E-64 T 13-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA CS348_16855 2b21382b1da1762937c44dec881f3a42 250 Pfam PF13242 HAD-hyrolase-like 174 246 3.5E-19 T 13-10-2018 CS348_16855 2b21382b1da1762937c44dec881f3a42 250 Gene3D G3DSA:3.40.50.1000 71 174 4.3E-84 T 13-10-2018 IPR023214 HAD superfamily CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 83 98 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 Gene3D G3DSA:2.40.30.10 242 329 1.5E-24 T 13-10-2018 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 28 434 4.9E-208 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 SUPERFAMILY SSF52540 24 251 5.64E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 SUPERFAMILY SSF50465 336 435 1.01E-29 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 19 475 53.198 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 Gene3D G3DSA:2.40.30.10 332 434 1.1E-29 T 13-10-2018 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 Gene3D G3DSA:3.40.50.300 10 240 1.1E-70 T 13-10-2018 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 34 214 1.4E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 Pfam PF00009 Elongation factor Tu GTP binding domain 27 231 2.4E-43 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 SUPERFAMILY SSF50447 244 328 3.09E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 PRINTS PR00315 GTP-binding elongation factor signature 90 98 7.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 PRINTS PR00315 GTP-binding elongation factor signature 126 137 7.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 PRINTS PR00315 GTP-binding elongation factor signature 29 42 7.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 PRINTS PR00315 GTP-binding elongation factor signature 163 172 7.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_05360 df036d9524b68804d2a29410eb4ff9a8 479 PRINTS PR00315 GTP-binding elongation factor signature 110 120 7.3E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CS348_17325 e0cf44a98f55954e64962146a5a83cfc 234 Gene3D G3DSA:3.90.470.20 20 124 1.4E-7 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_17325 e0cf44a98f55954e64962146a5a83cfc 234 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 103 189 1.7E-11 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_17325 e0cf44a98f55954e64962146a5a83cfc 234 PRINTS PR01399 Enterobactin synthetase component D signature 44 64 4.8E-23 T 13-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 CS348_17325 e0cf44a98f55954e64962146a5a83cfc 234 PRINTS PR01399 Enterobactin synthetase component D signature 146 162 4.8E-23 T 13-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 CS348_17325 e0cf44a98f55954e64962146a5a83cfc 234 PRINTS PR01399 Enterobactin synthetase component D signature 73 91 4.8E-23 T 13-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 CS348_17325 e0cf44a98f55954e64962146a5a83cfc 234 SUPERFAMILY SSF56214 102 212 7.5E-12 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 SUPERFAMILY SSF50129 1 144 3.62E-46 T 13-10-2018 IPR011032 GroES-like superfamily CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 1.7E-4 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 Pfam PF00107 Zinc-binding dehydrogenase 158 279 1.3E-15 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 323 5.2E-141 T 13-10-2018 IPR014188 Acrylyl-CoA reductase AcuI CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 Gene3D G3DSA:3.90.180.10 16 322 1.6E-133 T 13-10-2018 CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 SUPERFAMILY SSF51735 116 285 4.1E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 Gene3D G3DSA:3.40.50.720 125 291 1.6E-133 T 13-10-2018 CS348_02335 525cfec5f43d13bf03cc75fe23849a29 324 SMART SM00829 12 321 8.8E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 Pfam PF04055 Radical SAM superfamily 118 263 2.0E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 6.2E-158 T 13-10-2018 IPR022462 Lysine-2,3-aminomutase-like CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 Gene3D G3DSA:3.20.20.70 51 334 9.4E-91 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 3 328 3.2E-145 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 SUPERFAMILY SSF102114 102 324 2.22E-25 T 13-10-2018 CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 Pfam PF13353 4Fe-4S single cluster domain 111 181 3.9E-6 T 13-10-2018 CS348_21950 1929c0876ff7e0d0296343269b0e41de 342 PIRSF PIRSF004911 1 342 1.9E-120 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CS348_13970 47d0cd992bcccc67d7510eb43cf2f549 83 Pfam PF03891 Domain of unknown function (DUF333) 31 76 7.7E-19 T 13-10-2018 IPR005590 Protein of unknown function DUF333 CS348_08870 ad3ac32857e8a59a39d473bc5140c077 152 Gene3D G3DSA:3.30.1830.10 27 152 6.5E-45 T 13-10-2018 CS348_08870 ad3ac32857e8a59a39d473bc5140c077 152 SUPERFAMILY SSF160704 24 151 7.32E-41 T 13-10-2018 IPR036699 YehR-like superfamily CS348_08870 ad3ac32857e8a59a39d473bc5140c077 152 Pfam PF06998 Protein of unknown function (DUF1307) 28 149 5.6E-43 T 13-10-2018 IPR009736 Protein of unknown function DUF1307 CS348_08870 ad3ac32857e8a59a39d473bc5140c077 152 PIRSF PIRSF006187 1 152 1.5E-60 T 13-10-2018 IPR009736 Protein of unknown function DUF1307 CS348_21890 14fceed3b39d77b496b789507b3a62e9 500 PIRSF PIRSF006060 1 499 3.7E-59 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_21890 14fceed3b39d77b496b789507b3a62e9 500 Gene3D G3DSA:1.20.1740.10 3 493 2.1E-17 T 13-10-2018 CS348_21890 14fceed3b39d77b496b789507b3a62e9 500 Pfam PF13520 Amino acid permease 9 454 2.9E-30 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_24600 a8a802f0d44be64679e9db985d203e64 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 25.359 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CS348_24600 a8a802f0d44be64679e9db985d203e64 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 68 4.0E-21 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CS348_24600 a8a802f0d44be64679e9db985d203e64 85 SMART SM01234 8 75 2.7E-45 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CS348_24600 a8a802f0d44be64679e9db985d203e64 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 77 6.1E-33 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CS348_24600 a8a802f0d44be64679e9db985d203e64 85 Pfam PF01809 Haemolytic domain 10 75 1.1E-30 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CS348_25195 2c4fad49ef7a77bf21590a96870f246a 339 Pfam PF02387 IncFII RepA protein family 54 329 7.7E-42 T 13-10-2018 IPR003446 Plasmid replication initiation, RepA GO:0006276 CS348_21690 787a7070bedff41d3823dee4e360cf5a 216 SUPERFAMILY SSF51366 2 215 5.27E-41 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_21690 787a7070bedff41d3823dee4e360cf5a 216 Gene3D G3DSA:3.20.20.70 1 216 1.1E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_21690 787a7070bedff41d3823dee4e360cf5a 216 Hamap MF_01267 3-keto-L-gulonate-6-phosphate decarboxylase UlaD [ulaD]. 1 216 69.034 T 13-10-2018 IPR023942 3-keto-L-gulonate-6-phosphate decarboxylase, UlaD GO:0000287|GO:0019854|GO:0033982 KEGG: 00040+4.1.1.85|KEGG: 00053+4.1.1.85|MetaCyc: PWY-6961 CS348_21690 787a7070bedff41d3823dee4e360cf5a 216 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 206 3.3E-28 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_21690 787a7070bedff41d3823dee4e360cf5a 216 SMART SM00934 5 207 3.8E-35 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.5E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 SUPERFAMILY SSF53850 89 295 7.29E-47 T 13-10-2018 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 Gene3D G3DSA:3.40.190.10 164 267 7.3E-80 T 13-10-2018 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 Gene3D G3DSA:3.40.190.10 91 281 7.3E-80 T 13-10-2018 CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 SUPERFAMILY SSF46785 1 86 1.27E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 Gene3D G3DSA:1.10.10.10 1 85 5.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_22990 bc9cb97851a79ffada225c8db7639f38 305 Pfam PF03466 LysR substrate binding domain 89 292 5.4E-54 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_18190 4bdc397cb4179ad1a7d23ec2864f6182 169 Gene3D G3DSA:3.30.70.990 15 103 1.2E-31 T 13-10-2018 IPR035570 UPF0234, N-terminal CS348_18190 4bdc397cb4179ad1a7d23ec2864f6182 169 SUPERFAMILY SSF89963 8 95 8.37E-30 T 13-10-2018 IPR036183 YajQ-like superfamily CS348_18190 4bdc397cb4179ad1a7d23ec2864f6182 169 Pfam PF04461 Protein of unknown function (DUF520) 8 168 2.4E-64 T 13-10-2018 IPR007551 Protein of unknown function DUF520 CS348_18190 4bdc397cb4179ad1a7d23ec2864f6182 169 SUPERFAMILY SSF89963 97 169 3.92E-29 T 13-10-2018 IPR036183 YajQ-like superfamily CS348_18190 4bdc397cb4179ad1a7d23ec2864f6182 169 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 7 169 30.235 T 13-10-2018 IPR007551 Protein of unknown function DUF520 CS348_18190 4bdc397cb4179ad1a7d23ec2864f6182 169 Gene3D G3DSA:3.30.70.860 104 169 4.1E-31 T 13-10-2018 IPR035571 UPF0234-like, C-terminal CS348_17100 6a05cbe7f79b58f77d84b1c358c16a3a 226 Gene3D G3DSA:3.40.50.2300 2 145 1.5E-23 T 13-10-2018 CS348_17100 6a05cbe7f79b58f77d84b1c358c16a3a 226 PIRSF PIRSF006171 3 226 5.3E-74 T 13-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 CS348_17100 6a05cbe7f79b58f77d84b1c358c16a3a 226 Pfam PF00072 Response regulator receiver domain 8 117 9.3E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_17100 6a05cbe7f79b58f77d84b1c358c16a3a 226 Pfam PF12431 Transcriptional regulator 135 162 8.4E-10 T 13-10-2018 IPR028141 Transcriptional regulator CS348_17100 6a05cbe7f79b58f77d84b1c358c16a3a 226 SUPERFAMILY SSF52172 3 137 2.56E-30 T 13-10-2018 IPR011006 CheY-like superfamily CS348_17100 6a05cbe7f79b58f77d84b1c358c16a3a 226 SMART SM00448 5 118 4.6E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_13010 10157d1175f3d849cff80df2e19d4e36 122 PIRSF PIRSF034789 3 122 4.5E-58 T 13-10-2018 IPR017033 Type III secretion system apparatus protein SsaM CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 Gene3D G3DSA:2.60.40.10 25 143 7.1E-37 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 143 1.0E-36 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 101 118 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 PRINTS PR00969 Pili chaperone signature 26 35 2.0E-31 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 PRINTS PR00969 Pili chaperone signature 71 92 2.0E-31 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 PRINTS PR00969 Pili chaperone signature 125 140 2.0E-31 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 PRINTS PR00969 Pili chaperone signature 161 176 2.0E-31 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 PRINTS PR00969 Pili chaperone signature 102 119 2.0E-31 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 SUPERFAMILY SSF49354 21 143 2.62E-35 T 13-10-2018 IPR008962 PapD-like superfamily CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 SUPERFAMILY SSF49584 150 239 1.96E-18 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 Gene3D G3DSA:2.60.40.10 146 239 6.6E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_04845 668d4a501c27a8d34854bbfb2c15db28 247 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 226 9.5E-12 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_12880 3dfd4b888103f8ade1d456ac9b06e4d9 199 SUPERFAMILY SSF46689 7 79 2.87E-15 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_12880 3dfd4b888103f8ade1d456ac9b06e4d9 199 Gene3D G3DSA:1.10.357.10 1 199 5.7E-73 T 13-10-2018 CS348_12880 3dfd4b888103f8ade1d456ac9b06e4d9 199 Pfam PF16925 Bacterial transcriptional repressor C-terminal 84 189 1.3E-10 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CS348_12880 3dfd4b888103f8ade1d456ac9b06e4d9 199 SUPERFAMILY SSF48498 81 194 7.19E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_12880 3dfd4b888103f8ade1d456ac9b06e4d9 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 55 6.8E-11 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 3.8E-116 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 SUPERFAMILY SSF51395 10 319 7.51E-87 T 13-10-2018 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.805 T 13-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 320 1.0E-140 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 Gene3D G3DSA:1.10.1200.80 252 321 4.1E-7 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 PIRSF PIRSF006621 1 321 3.7E-100 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 Gene3D G3DSA:3.20.20.70 6 248 2.6E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02290 c7d2ea05f17d7b47582b3a008fca5630 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 Pfam PF12848 ABC transporter 224 309 1.2E-20 T 13-10-2018 IPR032781 ABC-transporter extension domain CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 SUPERFAMILY SSF52540 6 237 4.28E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 SUPERFAMILY SSF52540 298 523 4.02E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 Gene3D G3DSA:3.40.50.300 282 530 1.9E-56 T 13-10-2018 CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 SMART SM00382 344 512 8.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 SMART SM00382 26 238 3.5E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 Gene3D G3DSA:3.40.50.300 3 279 1.0E-56 T 13-10-2018 CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 Pfam PF00005 ABC transporter 18 184 1.3E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16135 8dd377b2f2598d7980abe74a3be09ecd 531 Pfam PF00005 ABC transporter 336 467 3.0E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_05400 0945f3ea18b7adc845718f63b5353887 208 SUPERFAMILY SSF53335 12 204 2.3E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_05400 0945f3ea18b7adc845718f63b5353887 208 Gene3D G3DSA:3.40.50.150 1 207 4.6E-77 T 13-10-2018 CS348_05400 0945f3ea18b7adc845718f63b5353887 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 39.134 T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CS348_05400 0945f3ea18b7adc845718f63b5353887 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 2 207 6.9E-97 T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CS348_05400 0945f3ea18b7adc845718f63b5353887 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 1.4E-80 T 13-10-2018 CS348_05400 0945f3ea18b7adc845718f63b5353887 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 CS348_00665 75f15988850aab3a02f38a1e68c53a09 310 SUPERFAMILY SSF51735 1 306 2.12E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_00665 75f15988850aab3a02f38a1e68c53a09 310 Gene3D G3DSA:3.40.50.720 2 288 2.0E-121 T 13-10-2018 CS348_00665 75f15988850aab3a02f38a1e68c53a09 310 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 309 49.623 T 13-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 CS348_00665 75f15988850aab3a02f38a1e68c53a09 310 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 308 1.5E-137 T 13-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 CS348_00665 75f15988850aab3a02f38a1e68c53a09 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 4.1E-46 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_00665 75f15988850aab3a02f38a1e68c53a09 310 Gene3D G3DSA:3.90.25.10 168 279 2.0E-121 T 13-10-2018 CS348_25220 f39c001eaf411629424a0319630b6ef1 556 Gene3D G3DSA:2.40.160.50 183 556 2.2E-62 T 13-10-2018 CS348_25220 f39c001eaf411629424a0319630b6ef1 556 Pfam PF08479 POTRA domain, ShlB-type 81 154 3.4E-18 T 13-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type CS348_25220 f39c001eaf411629424a0319630b6ef1 556 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 211 518 4.4E-87 T 13-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal CS348_25220 f39c001eaf411629424a0319630b6ef1 556 PIRSF PIRSF029745 1 556 1.6E-117 T 13-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 CS348_25220 f39c001eaf411629424a0319630b6ef1 556 Pfam PF17287 POTRA domain 156 206 1.5E-13 T 13-10-2018 IPR035251 ShlB, POTRA domain CS348_25220 f39c001eaf411629424a0319630b6ef1 556 Gene3D G3DSA:3.10.20.310 84 157 2.5E-8 T 13-10-2018 CS348_15180 5fd3abec36721ebf0e9183c0c52c579c 417 Pfam PF04403 Paraquat-inducible protein A 253 408 8.4E-54 T 13-10-2018 IPR007498 Intermembrane transport protein PqiA-like CS348_15180 5fd3abec36721ebf0e9183c0c52c579c 417 Pfam PF04403 Paraquat-inducible protein A 49 200 1.1E-38 T 13-10-2018 IPR007498 Intermembrane transport protein PqiA-like CS348_15180 5fd3abec36721ebf0e9183c0c52c579c 417 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 1 408 1.1E-188 T 13-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 SUPERFAMILY SSF103473 4 288 1.57E-27 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 SUPERFAMILY SSF103473 212 473 3.53E-6 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 139 151 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 450 2.1E-82 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 Gene3D G3DSA:1.20.1250.20 2 480 4.4E-111 T 13-10-2018 CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 64 88 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_06750 7c340b1b9b1976312dac1d815853e52f 486 Pfam PF00854 POT family 77 440 4.8E-82 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CS348_05320 d073576345b098f4add77108ca045821 200 TIGRFAM TIGR02548 casB_cse2: CRISPR type I-E/ECOLI-associated protein CasB/Cse2 22 195 1.9E-42 T 13-10-2018 IPR013382 CRISPR-associated protein Cse2 CS348_05320 d073576345b098f4add77108ca045821 200 Gene3D G3DSA:1.10.520.40 9 198 2.5E-24 T 13-10-2018 IPR038287 Cse2 superfamily CS348_05320 d073576345b098f4add77108ca045821 200 Pfam PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) 46 193 3.9E-15 T 13-10-2018 IPR013382 CRISPR-associated protein Cse2 CS348_17280 3f16c1c90100ed2119d890e86ca2b9fc 414 Gene3D G3DSA:1.20.1250.20 14 399 4.3E-33 T 13-10-2018 CS348_17280 3f16c1c90100ed2119d890e86ca2b9fc 414 Hamap MF_01436 Enterobactin exporter EntS [entS]. 1 414 46.86 T 13-10-2018 IPR023722 Enterobactin exporter, EntS GO:0005886|GO:0042930|GO:0042931 CS348_17280 3f16c1c90100ed2119d890e86ca2b9fc 414 Pfam PF05977 Transmembrane secretion effector 16 397 6.0E-20 T 13-10-2018 IPR010290 Transmembrane secretion effector CS348_17280 3f16c1c90100ed2119d890e86ca2b9fc 414 SUPERFAMILY SSF103473 16 403 8.37E-40 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 14 434 6.4E-173 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 Gene3D G3DSA:1.20.5.570 458 492 6.7E-20 T 13-10-2018 CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 9 458 1.4E-189 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 4 490 74.189 T 13-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 SUPERFAMILY SSF50475 6 325 1.02E-128 T 13-10-2018 CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 SUPERFAMILY SSF143968 326 489 1.83E-66 T 13-10-2018 CS348_23915 fd89e431c8ca38ef410f952ab9d43a93 492 Gene3D G3DSA:3.40.1670.10 340 457 9.8E-52 T 13-10-2018 CS348_13200 dd127216e7ba2c82319cf781baa92e70 79 PIRSF PIRSF002855 1 79 3.9E-27 T 13-10-2018 IPR016367 Murein-lipoprotein CS348_13200 dd127216e7ba2c82319cf781baa92e70 79 Gene3D G3DSA:1.20.5.190 23 74 1.0E-31 T 13-10-2018 CS348_13200 dd127216e7ba2c82319cf781baa92e70 79 Pfam PF04728 Lipoprotein leucine-zipper 27 75 3.6E-22 T 13-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 CS348_13200 dd127216e7ba2c82319cf781baa92e70 79 SUPERFAMILY SSF58042 25 74 7.46E-22 T 13-10-2018 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 SMART SM01374 1 123 3.9E-86 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 6.9E-55 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 4.4E-60 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.609 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CS348_02060 085432ff5f62d9b40e7465024b6fef37 123 Gene3D G3DSA:2.40.150.20 1 123 2.8E-57 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_17825 ca1b47e8a528a40fd5d6fa4aa06ff9b1 204 SUPERFAMILY SSF52266 28 202 3.95E-51 T 13-10-2018 CS348_17825 ca1b47e8a528a40fd5d6fa4aa06ff9b1 204 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 29 39 - T 13-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 CS348_17825 ca1b47e8a528a40fd5d6fa4aa06ff9b1 204 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 32 186 5.4E-25 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain CS348_17825 ca1b47e8a528a40fd5d6fa4aa06ff9b1 204 Gene3D G3DSA:3.40.50.1110 26 204 5.2E-76 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CS348_17860 27a720949285f55112fa597cf5f47021 138 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_17860 27a720949285f55112fa597cf5f47021 138 SMART SM00422 1 70 2.4E-29 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_17860 27a720949285f55112fa597cf5f47021 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 3.7E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_17860 27a720949285f55112fa597cf5f47021 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 3.7E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_17860 27a720949285f55112fa597cf5f47021 138 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 3.7E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_17860 27a720949285f55112fa597cf5f47021 138 Pfam PF13411 MerR HTH family regulatory protein 1 67 3.9E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_17860 27a720949285f55112fa597cf5f47021 138 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 5.0E-65 T 13-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 CS348_17860 27a720949285f55112fa597cf5f47021 138 SUPERFAMILY SSF46955 1 126 1.58E-35 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_17860 27a720949285f55112fa597cf5f47021 138 Gene3D G3DSA:1.10.1660.10 2 111 4.4E-33 T 13-10-2018 CS348_20345 5d674382a27963a532b3394cc00ff968 428 SUPERFAMILY SSF53686 1 425 4.45E-131 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_20345 5d674382a27963a532b3394cc00ff968 428 Pfam PF14821 Threonine synthase N terminus 8 80 7.8E-13 T 13-10-2018 IPR029144 Threonine synthase, N-terminal CS348_20345 5d674382a27963a532b3394cc00ff968 428 TIGRFAM TIGR00260 thrC: threonine synthase 52 398 6.0E-127 T 13-10-2018 IPR004450 Threonine synthase-like CS348_20345 5d674382a27963a532b3394cc00ff968 428 Gene3D G3DSA:3.40.50.1100 85 394 1.1E-141 T 13-10-2018 CS348_20345 5d674382a27963a532b3394cc00ff968 428 Gene3D G3DSA:3.40.50.1100 103 401 1.1E-141 T 13-10-2018 CS348_20345 5d674382a27963a532b3394cc00ff968 428 Gene3D G3DSA:3.90.1380.10 1 81 1.8E-37 T 13-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily CS348_20345 5d674382a27963a532b3394cc00ff968 428 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 98 369 2.4E-23 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_20345 5d674382a27963a532b3394cc00ff968 428 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CS348_10060 0af40768b6df7cc112d9bc6a0db828b8 165 SUPERFAMILY SSF47240 4 161 5.84E-56 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_10060 0af40768b6df7cc112d9bc6a0db828b8 165 Pfam PF00210 Ferritin-like domain 7 143 1.8E-35 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CS348_10060 0af40768b6df7cc112d9bc6a0db828b8 165 Gene3D G3DSA:1.20.1260.10 1 165 1.4E-45 T 13-10-2018 IPR012347 Ferritin-like CS348_07270 74767c926386e4df2e930c8229f7240a 279 Gene3D G3DSA:3.30.420.40 31 266 7.9E-90 T 13-10-2018 CS348_07270 74767c926386e4df2e930c8229f7240a 279 Pfam PF14450 Cell division protein FtsA 142 246 1.8E-8 T 13-10-2018 CS348_07270 74767c926386e4df2e930c8229f7240a 279 Gene3D G3DSA:3.30.420.40 141 253 7.9E-90 T 13-10-2018 CS348_07270 74767c926386e4df2e930c8229f7240a 279 TIGRFAM TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein 34 267 1.7E-109 T 13-10-2018 IPR013366 Ethanolamine utilisation EutJ CS348_07270 74767c926386e4df2e930c8229f7240a 279 SUPERFAMILY SSF53067 142 261 5.18E-20 T 13-10-2018 CS348_07270 74767c926386e4df2e930c8229f7240a 279 SUPERFAMILY SSF53067 31 132 2.14E-11 T 13-10-2018 CS348_15920 69a9dd74f3322d2242affdf9f76370ee 317 SUPERFAMILY SSF161098 27 308 1.83E-56 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15920 69a9dd74f3322d2242affdf9f76370ee 317 Gene3D G3DSA:1.10.3720.10 25 312 6.5E-55 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15920 69a9dd74f3322d2242affdf9f76370ee 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 313 1.9E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_23360 d5f33fac2255b877b41b6b4a3dbcdf83 149 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 3 147 8.6E-55 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_23360 d5f33fac2255b877b41b6b4a3dbcdf83 149 Pfam PF05069 Phage virion morphogenesis family 3 147 4.0E-43 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_07195 46c14df6b148423779bd39b3747ec852 191 SUPERFAMILY SSF55811 8 188 4.74E-50 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_07195 46c14df6b148423779bd39b3747ec852 191 Gene3D G3DSA:3.90.79.10 1 191 1.2E-60 T 13-10-2018 CS348_07195 46c14df6b148423779bd39b3747ec852 191 Pfam PF00293 NUDIX domain 45 156 4.8E-9 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_07195 46c14df6b148423779bd39b3747ec852 191 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 3 186 2.3E-76 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 CS348_21245 bcab01c65e85c0706ce8ca661e64a62f 270 Gene3D G3DSA:1.20.1260.10 20 89 1.5E-15 T 13-10-2018 IPR012347 Ferritin-like CS348_21245 bcab01c65e85c0706ce8ca661e64a62f 270 Gene3D G3DSA:1.20.1260.10 113 270 2.2E-54 T 13-10-2018 IPR012347 Ferritin-like CS348_21245 bcab01c65e85c0706ce8ca661e64a62f 270 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 21 264 4.2E-123 T 13-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 CS348_21245 bcab01c65e85c0706ce8ca661e64a62f 270 SUPERFAMILY SSF47240 23 267 1.76E-72 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_21245 bcab01c65e85c0706ce8ca661e64a62f 270 PIRSF PIRSF020736 14 269 7.1E-92 T 13-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 CS348_15605 8e0fea5d7e4c035c0a7ab0678d31dbd0 359 Pfam PF04865 Baseplate J-like protein 69 317 4.4E-59 T 13-10-2018 IPR006949 Baseplate protein J-like CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 5.8E-41 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 5.8E-41 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.8E-41 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.8E-41 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.8E-41 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 458 6.5E-151 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 Gene3D G3DSA:3.50.50.60 9 332 6.8E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 SUPERFAMILY SSF55424 343 466 1.01E-38 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 Gene3D G3DSA:3.50.50.60 150 271 6.8E-127 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 3.5E-35 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 SUPERFAMILY SSF51905 2 338 3.52E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 9.3E-70 T 13-10-2018 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 PIRSF PIRSF000350 1 468 3.1E-87 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 2.3E-62 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_19545 26b3530b9df314a1e27c72f0a057f626 474 Gene3D G3DSA:3.30.390.30 346 467 1.5E-45 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_17105 279bfd306a959d91a36f6c8199270962 553 Pfam PF17203 Single cache domain 3 63 173 6.7E-20 T 13-10-2018 IPR033463 Single cache domain 3 CS348_17105 279bfd306a959d91a36f6c8199270962 553 Gene3D G3DSA:3.30.450.20 42 173 1.4E-37 T 13-10-2018 CS348_17105 279bfd306a959d91a36f6c8199270962 553 Gene3D G3DSA:3.30.565.10 403 548 1.5E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_17105 279bfd306a959d91a36f6c8199270962 553 SUPERFAMILY SSF103190 48 179 3.66E-33 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CS348_17105 279bfd306a959d91a36f6c8199270962 553 SMART SM00091 222 292 2.1E-7 T 13-10-2018 IPR000014 PAS domain CS348_17105 279bfd306a959d91a36f6c8199270962 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 483 3.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17105 279bfd306a959d91a36f6c8199270962 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 525 538 3.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17105 279bfd306a959d91a36f6c8199270962 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 497 3.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17105 279bfd306a959d91a36f6c8199270962 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 501 519 3.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17105 279bfd306a959d91a36f6c8199270962 553 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 429 539 1.9E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17105 279bfd306a959d91a36f6c8199270962 553 Gene3D G3DSA:3.30.450.20 208 320 3.2E-15 T 13-10-2018 CS348_17105 279bfd306a959d91a36f6c8199270962 553 Gene3D G3DSA:1.10.287.130 321 383 1.5E-5 T 13-10-2018 CS348_17105 279bfd306a959d91a36f6c8199270962 553 SUPERFAMILY SSF55890 332 375 4.32E-8 T 13-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 CS348_17105 279bfd306a959d91a36f6c8199270962 553 SUPERFAMILY SSF55874 428 538 4.32E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_17105 279bfd306a959d91a36f6c8199270962 553 SMART SM00387 428 541 1.1E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17105 279bfd306a959d91a36f6c8199270962 553 Pfam PF13188 PAS domain 225 277 8.7E-5 T 13-10-2018 IPR000014 PAS domain CS348_17105 279bfd306a959d91a36f6c8199270962 553 SUPERFAMILY SSF55785 223 278 2.79E-7 T 13-10-2018 IPR035965 PAS domain superfamily CS348_17105 279bfd306a959d91a36f6c8199270962 553 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 330 374 4.2E-8 T 13-10-2018 IPR039506 SpoOB, alpha-helical domain CS348_21815 e5fdf033a62110f9088ac609792c6e02 102 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.0E-29 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CS348_21815 e5fdf033a62110f9088ac609792c6e02 102 SUPERFAMILY SSF50182 7 69 4.04E-24 T 13-10-2018 IPR010920 LSM domain superfamily CS348_21815 e5fdf033a62110f9088ac609792c6e02 102 Pfam PF17209 Hfq protein 7 69 4.9E-31 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CS348_21815 e5fdf033a62110f9088ac609792c6e02 102 Gene3D G3DSA:2.30.30.100 1 72 7.2E-35 T 13-10-2018 CS348_21815 e5fdf033a62110f9088ac609792c6e02 102 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.396 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CS348_09820 aa45639c46d2c2cd8942259fe0030ff0 75 Pfam PF10733 Protein of unknown function (DUF2525) 18 75 4.4E-33 T 13-10-2018 IPR019669 Uncharacterised bacterial stress protein YodD CS348_13135 71ddc38d0de3e3466ea3a24f944227c7 319 Pfam PF04463 Protein of unknown function (DUF523) 7 149 4.5E-35 T 13-10-2018 IPR007553 Domain of unknown function DUF523 CS348_13135 71ddc38d0de3e3466ea3a24f944227c7 319 PIRSF PIRSF037004 1 318 1.8E-132 T 13-10-2018 IPR017087 Uncharacterised conserved protein UCP037004 CS348_13135 71ddc38d0de3e3466ea3a24f944227c7 319 Pfam PF08349 Protein of unknown function (DUF1722) 192 309 3.9E-40 T 13-10-2018 IPR013560 Domain of unknown function DUF1722 CS348_22130 91e3554c030aeefa4ccce7182cd4a433 217 PIRSF PIRSF004690 19 217 6.3E-39 T 13-10-2018 IPR026269 Tat proofreading chaperone DmsD-type CS348_22130 91e3554c030aeefa4ccce7182cd4a433 217 Pfam PF02613 Nitrate reductase delta subunit 74 172 9.3E-19 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone CS348_22130 91e3554c030aeefa4ccce7182cd4a433 217 Gene3D G3DSA:1.10.3480.10 17 217 1.4E-42 T 13-10-2018 CS348_22130 91e3554c030aeefa4ccce7182cd4a433 217 SUPERFAMILY SSF89155 23 216 1.57E-47 T 13-10-2018 IPR036411 TorD-like superfamily CS348_09435 11818dda635e2f330c7371f1f20c5fb3 160 Gene3D G3DSA:3.30.70.1710 1 119 1.0E-25 T 13-10-2018 CS348_09435 11818dda635e2f330c7371f1f20c5fb3 160 SUPERFAMILY SSF143414 10 95 2.35E-22 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09435 11818dda635e2f330c7371f1f20c5fb3 160 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 10 73 5.0E-29 T 13-10-2018 CS348_09435 11818dda635e2f330c7371f1f20c5fb3 160 Pfam PF00936 BMC domain 11 87 7.7E-20 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09435 11818dda635e2f330c7371f1f20c5fb3 160 SMART SM00877 10 87 7.2E-26 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 2.4E-123 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 SUPERFAMILY SSF53187 180 496 4.08E-125 T 13-10-2018 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 Gene3D G3DSA:3.40.220.10 1 159 7.1E-59 T 13-10-2018 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 Gene3D G3DSA:3.40.630.10 181 498 5.2E-143 T 13-10-2018 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 SUPERFAMILY SSF52949 1 184 5.89E-52 T 13-10-2018 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.495 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 1.0E-33 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 6.0E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 6.0E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 6.0E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 6.0E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_21215 340bdf3d5d1af371a7f206b8ab170c41 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 6.0E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 Gene3D G3DSA:1.10.246.130 277 390 1.1E-49 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 SUPERFAMILY SSF56235 41 572 3.86E-196 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 291 310 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 480 497 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 71 96 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 261 277 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 391 409 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 144 162 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 162 181 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 415 433 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 456 471 2.7E-81 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 49 571 6.9E-231 T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 Pfam PF01019 Gamma-glutamyltranspeptidase 64 572 4.3E-190 T 13-10-2018 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 391 415 - T 13-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 CS348_01480 5333d2b00ebe85d339d102450f30efbc 580 Gene3D G3DSA:3.60.20.40 391 580 4.5E-85 T 13-10-2018 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 SMART SM00357 5 69 9.3E-31 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 13-10-2018 IPR019844 Cold-shock conserved site CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 SUPERFAMILY SSF50249 3 68 3.26E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 3.0E-33 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 Gene3D G3DSA:2.40.50.140 1 69 2.1E-32 T 13-10-2018 CS348_10625 2438b21594d2be1ec72263acfe9ba76f 69 PIRSF PIRSF002599 1 69 8.7E-26 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 ProSitePatterns PS01068 OmpA-like domain. 261 305 - T 13-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 244 263 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 317 330 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 183 197 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 215 230 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 283 302 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 107 123 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01022 Outer membrane protein A signature 169 183 1.2E-72 T 13-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 Pfam PF00691 OmpA family 226 319 1.2E-23 T 13-10-2018 IPR006665 OmpA-like domain CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 Gene3D G3DSA:3.30.1330.60 203 347 8.1E-61 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 SUPERFAMILY SSF56925 22 198 6.8E-46 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01021 OMPA domain signature 227 249 6.8E-24 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01021 OMPA domain signature 259 274 6.8E-24 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 PRINTS PR01021 OMPA domain signature 274 290 6.8E-24 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 Gene3D G3DSA:2.40.160.20 22 196 2.4E-75 T 13-10-2018 CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 SUPERFAMILY SSF103088 215 338 1.16E-35 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_15145 aa7bc389d227b9d98ba2791cc54e78f4 350 Pfam PF01389 OmpA-like transmembrane domain 23 199 1.3E-75 T 13-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 246 328 1.8E-24 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 246 310 1.7E-20 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 SMART SM00382 46 252 4.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 Pfam PF00005 ABC transporter 38 194 5.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 Gene3D G3DSA:3.40.50.300 15 333 4.8E-97 T 13-10-2018 CS348_11130 c56efa11e7de3f526c7d58aead1cc7c1 335 SUPERFAMILY SSF52540 47 315 9.54E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14480 df8fda31fcfc0174ec8201fc0744ccaf 359 Pfam PF02504 Fatty acid synthesis protein 5 331 2.2E-126 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 CS348_14480 df8fda31fcfc0174ec8201fc0744ccaf 359 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 345 3.3E-145 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CS348_14480 df8fda31fcfc0174ec8201fc0744ccaf 359 SUPERFAMILY SSF53659 4 340 1.64E-103 T 13-10-2018 CS348_14480 df8fda31fcfc0174ec8201fc0744ccaf 359 PIRSF PIRSF002465 2 343 1.3E-127 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CS348_14480 df8fda31fcfc0174ec8201fc0744ccaf 359 Gene3D G3DSA:3.40.718.10 3 343 3.3E-123 T 13-10-2018 CS348_14480 df8fda31fcfc0174ec8201fc0744ccaf 359 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 345 141.072 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 CS348_06580 84f5cf4779351b8e242cdb7a77287673 299 Gene3D G3DSA:3.40.190.290 90 296 4.0E-32 T 13-10-2018 CS348_06580 84f5cf4779351b8e242cdb7a77287673 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 7.0E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_06580 84f5cf4779351b8e242cdb7a77287673 299 SUPERFAMILY SSF53850 87 291 3.57E-38 T 13-10-2018 CS348_06580 84f5cf4779351b8e242cdb7a77287673 299 Gene3D G3DSA:1.10.10.10 1 89 4.8E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06580 84f5cf4779351b8e242cdb7a77287673 299 Pfam PF03466 LysR substrate binding domain 86 287 9.2E-41 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_06580 84f5cf4779351b8e242cdb7a77287673 299 SUPERFAMILY SSF46785 1 110 1.32E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_09515 44d7d4339b0c276e33cdba757019579c 192 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 13 132 2.5E-42 T 13-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 CS348_09515 44d7d4339b0c276e33cdba757019579c 192 SUPERFAMILY SSF53335 3 149 1.53E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_09515 44d7d4339b0c276e33cdba757019579c 192 Gene3D G3DSA:3.40.50.150 1 191 3.5E-62 T 13-10-2018 CS348_09515 44d7d4339b0c276e33cdba757019579c 192 Pfam PF05175 Methyltransferase small domain 22 141 1.7E-8 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_25010 4b15718b791b516c21d2928756f838b4 1020 Gene3D G3DSA:3.40.50.300 735 929 3.7E-11 T 13-10-2018 CS348_25010 4b15718b791b516c21d2928756f838b4 1020 SUPERFAMILY SSF52540 461 903 2.37E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17250 e628fa69dd0fd38d8f446ab65c449ead 137 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 134 6.4E-45 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 CS348_17250 e628fa69dd0fd38d8f446ab65c449ead 137 Pfam PF03061 Thioesterase superfamily 50 127 1.3E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CS348_17250 e628fa69dd0fd38d8f446ab65c449ead 137 Gene3D G3DSA:3.10.129.10 1 137 6.2E-59 T 13-10-2018 CS348_17250 e628fa69dd0fd38d8f446ab65c449ead 137 SUPERFAMILY SSF54637 1 135 5.77E-30 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_17250 e628fa69dd0fd38d8f446ab65c449ead 137 Hamap MF_00907 Proofreading thioesterase EntH [entH]. 1 137 56.905 T 13-10-2018 IPR026576 Proofreading thioesterase EntH GO:0009239|GO:0016790 CS348_16730 9f668f215b045c18e33100ed4675742f 559 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 2.4E-242 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CS348_16730 9f668f215b045c18e33100ed4675742f 559 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.128 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CS348_16730 9f668f215b045c18e33100ed4675742f 559 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 558 9.9E-284 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CS348_16730 9f668f215b045c18e33100ed4675742f 559 PIRSF PIRSF001294 1 559 2.0E-237 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CS348_13590 5ca55edf229fd3256e808f5f05f0fa59 52 Pfam PF06528 Phage P2 GpE 11 46 3.5E-14 T 13-10-2018 IPR009493 Burkholderia phage phiE202, Gp27 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Gene3D G3DSA:3.90.199.10 27 158 1.8E-58 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 29 465 5.4E-135 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 641 692 1.5E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 593 630 4.3E-4 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Gene3D G3DSA:1.10.268.10 341 480 2.5E-49 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Gene3D G3DSA:3.30.1360.40 159 340 4.8E-72 T 13-10-2018 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Gene3D G3DSA:2.120.10.90 497 728 1.1E-13 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 SMART SM00434 8 458 7.7E-241 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 1 738 34.277 T 13-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 SUPERFAMILY SSF56719 28 479 3.66E-154 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 SUPERFAMILY SSF101904 494 736 5.36E-51 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CS348_03375 2d6f40da1f37bff487fcba596c96a505 752 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 5 738 0.0 T 13-10-2018 CS348_24810 fb27174b7c264034920c83e20d10dc46 676 Pfam PF02195 ParB-like nuclease domain 54 100 2.1E-4 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_24810 fb27174b7c264034920c83e20d10dc46 676 Gene3D G3DSA:1.10.10.2830 121 231 9.7E-16 T 13-10-2018 CS348_24810 fb27174b7c264034920c83e20d10dc46 676 SUPERFAMILY SSF110849 37 131 2.44E-7 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_24810 fb27174b7c264034920c83e20d10dc46 676 SUPERFAMILY SSF109709 126 230 7.06E-19 T 13-10-2018 CS348_18980 e34f1a6faa63ee4d748ce53a675b4a95 155 Hamap MF_00042 Ribonuclease H [rnhA]. 2 150 39.689 T 13-10-2018 IPR022892 Ribonuclease HI GO:0004523 CS348_18980 e34f1a6faa63ee4d748ce53a675b4a95 155 Pfam PF00075 RNase H 3 141 2.6E-54 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 CS348_18980 e34f1a6faa63ee4d748ce53a675b4a95 155 Gene3D G3DSA:3.30.420.10 1 155 5.8E-63 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_18980 e34f1a6faa63ee4d748ce53a675b4a95 155 SUPERFAMILY SSF53098 4 141 1.01E-58 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_15125 60593d09405fe535993a0736c0180d62 148 PIRSF PIRSF028777 1 139 5.9E-54 T 13-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 CS348_15125 60593d09405fe535993a0736c0180d62 148 Pfam PF03733 Inner membrane component domain 77 127 1.9E-17 T 13-10-2018 IPR005185 Inner membrane component domain CS348_15125 60593d09405fe535993a0736c0180d62 148 Pfam PF03733 Inner membrane component domain 4 53 2.4E-9 T 13-10-2018 IPR005185 Inner membrane component domain CS348_10280 44798aa1353186d797fcadf2fcd060eb 251 Pfam PF00005 ABC transporter 20 149 1.9E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_10280 44798aa1353186d797fcadf2fcd060eb 251 Gene3D G3DSA:3.40.50.300 1 223 2.4E-58 T 13-10-2018 CS348_10280 44798aa1353186d797fcadf2fcd060eb 251 SMART SM00382 29 199 1.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_10280 44798aa1353186d797fcadf2fcd060eb 251 SUPERFAMILY SSF52540 4 212 2.88E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11945 e1c6b90950832322db5712c9fe98a0d9 392 Pfam PF03594 Benzoate membrane transport protein 8 379 5.4E-146 T 13-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 CS348_11945 e1c6b90950832322db5712c9fe98a0d9 392 TIGRFAM TIGR00843 benE: benzoate transporter 1 382 7.7E-174 T 13-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 CS348_04985 5eae4c46029db90175528f087a1bb294 291 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 287 2.2E-110 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CS348_04985 5eae4c46029db90175528f087a1bb294 291 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 280 6.4E-77 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CS348_04985 5eae4c46029db90175528f087a1bb294 291 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CS348_04985 5eae4c46029db90175528f087a1bb294 291 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 285 20.536 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 Gene3D G3DSA:3.30.1490.20 79 144 7.1E-13 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 Pfam PF02222 ATP-grasp domain 88 254 3.7E-54 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 SUPERFAMILY SSF56059 79 274 2.3E-58 T 13-10-2018 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 Gene3D G3DSA:3.30.470.20 145 355 2.2E-84 T 13-10-2018 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 SUPERFAMILY SSF51246 278 353 9.42E-20 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 SUPERFAMILY SSF52440 2 76 7.48E-16 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 33.293 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 329 9.4E-112 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CS348_17785 c2f5f7c300e128eb3d975b038205be71 355 Gene3D G3DSA:3.40.50.20 1 70 1.0E-31 T 13-10-2018 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 Gene3D G3DSA:1.20.1530.20 3 386 1.1E-84 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 598 46.656 T 13-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 Gene3D G3DSA:3.40.50.720 400 561 1.1E-35 T 13-10-2018 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 Pfam PF00999 Sodium/hydrogen exchanger family 11 373 1.9E-68 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 2.7E-92 T 13-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 PRINTS PR00335 TrkA potassium uptake protein signature 459 469 4.7E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 PRINTS PR00335 TrkA potassium uptake protein signature 419 433 4.7E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 PRINTS PR00335 TrkA potassium uptake protein signature 402 416 4.7E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 PRINTS PR00335 TrkA potassium uptake protein signature 448 458 4.7E-7 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 Pfam PF02254 TrkA-N domain 403 514 2.4E-25 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CS348_01895 31112eda5b8e292b3b46a2d5ccb7c0d1 601 SUPERFAMILY SSF51735 402 529 9.49E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_03635 619369465ff38c9f10cc5c720f8aef51 457 Pfam PF13347 MFS/sugar transport protein 12 431 4.1E-94 T 13-10-2018 CS348_03635 619369465ff38c9f10cc5c720f8aef51 457 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 61 86 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 CS348_03635 619369465ff38c9f10cc5c720f8aef51 457 Gene3D G3DSA:1.20.1250.20 7 207 9.4E-12 T 13-10-2018 CS348_03635 619369465ff38c9f10cc5c720f8aef51 457 SUPERFAMILY SSF103473 1 430 3.01E-38 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_03635 619369465ff38c9f10cc5c720f8aef51 457 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 11 444 8.4E-147 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_03635 619369465ff38c9f10cc5c720f8aef51 457 Gene3D G3DSA:1.20.1250.20 226 436 1.1E-12 T 13-10-2018 CS348_14785 d9b614e0c496ac994e568f3ce31043c3 312 Gene3D G3DSA:3.40.50.720 94 278 2.9E-116 T 13-10-2018 CS348_14785 d9b614e0c496ac994e568f3ce31043c3 312 Hamap MF_01666 Glyoxylate/hydroxypyruvate reductase A [ghrA]. 1 312 67.685 T 13-10-2018 IPR023514 Glyoxylate/hydroxypyruvate reductase A GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 CS348_14785 d9b614e0c496ac994e568f3ce31043c3 312 SUPERFAMILY SSF51735 98 278 3.1E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_14785 d9b614e0c496ac994e568f3ce31043c3 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 105 277 7.8E-43 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CS348_14785 d9b614e0c496ac994e568f3ce31043c3 312 Gene3D G3DSA:3.40.50.720 15 307 2.9E-116 T 13-10-2018 CS348_09170 50f74fe92ef2e3e7a63db8cd3e8e6636 331 Gene3D G3DSA:3.40.50.720 1 320 1.2E-54 T 13-10-2018 CS348_09170 50f74fe92ef2e3e7a63db8cd3e8e6636 331 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 222 1.7E-28 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_09170 50f74fe92ef2e3e7a63db8cd3e8e6636 331 SUPERFAMILY SSF51735 3 316 2.83E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_03965 45389d0638809efc3ed91de6f34c6db9 211 SUPERFAMILY SSF53955 29 181 2.81E-14 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_03965 45389d0638809efc3ed91de6f34c6db9 211 Pfam PF01464 Transglycosylase SLT domain 95 150 2.5E-5 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_04560 ffdb689f804f5905900ebb06340139b4 323 Gene3D G3DSA:3.30.540.10 8 319 1.5E-116 T 13-10-2018 CS348_04560 ffdb689f804f5905900ebb06340139b4 323 Gene3D G3DSA:3.40.190.90 109 276 1.5E-116 T 13-10-2018 CS348_04560 ffdb689f804f5905900ebb06340139b4 323 PIRSF PIRSF004532 1 323 8.3E-133 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CS348_04560 ffdb689f804f5905900ebb06340139b4 323 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 4 321 2.0E-120 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CS348_04560 ffdb689f804f5905900ebb06340139b4 323 SUPERFAMILY SSF56655 2 322 7.97E-99 T 13-10-2018 CS348_04560 ffdb689f804f5905900ebb06340139b4 323 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 322 1.2E-166 T 13-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 CS348_18945 b8855f5b5966964e26cedc4fac41a59e 274 Gene3D G3DSA:1.25.40.10 12 94 4.1E-17 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_18945 b8855f5b5966964e26cedc4fac41a59e 274 SUPERFAMILY SSF144059 10 269 1.23E-90 T 13-10-2018 CS348_18945 b8855f5b5966964e26cedc4fac41a59e 274 PIRSF PIRSF029288 1 271 1.9E-112 T 13-10-2018 IPR009211 Predicted virulence protein, SciE type CS348_18945 b8855f5b5966964e26cedc4fac41a59e 274 Pfam PF07024 ImpE protein 145 265 6.1E-43 T 13-10-2018 IPR009211 Predicted virulence protein, SciE type CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 ProSitePatterns PS00785 5'-nucleotidase signature 1. 24 36 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 SUPERFAMILY SSF55816 355 597 3.4E-39 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 Gene3D G3DSA:3.60.21.10 16 354 1.1E-143 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 Pfam PF02872 5'-nucleotidase, C-terminal domain 355 550 3.4E-22 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 SUPERFAMILY SSF56300 19 353 5.35E-86 T 13-10-2018 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 22 647 0.0 T 13-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 Gene3D G3DSA:3.90.780.10 414 586 5.9E-52 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 Pfam PF00149 Calcineurin-like phosphoesterase 24 259 4.1E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 PRINTS PR01607 Apyrase family signature 243 266 4.1E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 PRINTS PR01607 Apyrase family signature 428 451 4.1E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 PRINTS PR01607 Apyrase family signature 22 40 4.1E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 PRINTS PR01607 Apyrase family signature 283 303 4.1E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 PRINTS PR01607 Apyrase family signature 215 232 4.1E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_21600 18af18d9b7b713ca7e40687fd03ce99e 647 PRINTS PR01607 Apyrase family signature 530 549 4.1E-32 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_08520 35fcc6023f633ba0c1a57454f557da0f 341 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 9 46 1.3E-5 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CS348_08520 35fcc6023f633ba0c1a57454f557da0f 341 Gene3D G3DSA:1.10.3720.10 131 335 1.6E-15 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08520 35fcc6023f633ba0c1a57454f557da0f 341 SUPERFAMILY SSF161098 135 321 1.2E-18 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08520 35fcc6023f633ba0c1a57454f557da0f 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 6.1E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_12045 6c252d896587337f4c915a5e84a9d4f5 706 Gene3D G3DSA:2.40.170.20 184 702 9.1E-104 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_12045 6c252d896587337f4c915a5e84a9d4f5 706 SUPERFAMILY SSF56935 25 702 3.36E-125 T 13-10-2018 CS348_12045 6c252d896587337f4c915a5e84a9d4f5 706 Gene3D G3DSA:2.170.130.10 32 162 3.4E-26 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_12045 6c252d896587337f4c915a5e84a9d4f5 706 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 157 3.0E-23 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_12045 6c252d896587337f4c915a5e84a9d4f5 706 Pfam PF00593 TonB dependent receptor 253 701 6.5E-57 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_01375 105bc9d14bab4e629382e08c467d4e28 198 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 1 189 3.0E-74 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CS348_01375 105bc9d14bab4e629382e08c467d4e28 198 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 124 130 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_01375 105bc9d14bab4e629382e08c467d4e28 198 Pfam PF03602 Conserved hypothetical protein 95 12 188 2.0E-63 T 13-10-2018 CS348_01375 105bc9d14bab4e629382e08c467d4e28 198 PIRSF PIRSF004553 11 191 4.8E-61 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CS348_01375 105bc9d14bab4e629382e08c467d4e28 198 Gene3D G3DSA:3.40.50.150 1 198 8.8E-65 T 13-10-2018 CS348_01375 105bc9d14bab4e629382e08c467d4e28 198 SUPERFAMILY SSF53335 11 188 1.04E-53 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_03225 fbd3e1044ec9f44681e690d45a7d9734 433 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 4 88 0.01 T 13-10-2018 CS348_03225 fbd3e1044ec9f44681e690d45a7d9734 433 SMART SM01118 2 202 1.8E-41 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CS348_03225 fbd3e1044ec9f44681e690d45a7d9734 433 SUPERFAMILY SSF55154 1 218 2.45E-52 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 CS348_03225 fbd3e1044ec9f44681e690d45a7d9734 433 Pfam PF01928 CYTH domain 3 196 1.3E-38 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CS348_03225 fbd3e1044ec9f44681e690d45a7d9734 433 Gene3D G3DSA:2.40.320.10 2 200 9.9E-38 T 13-10-2018 CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 SUPERFAMILY SSF53474 12 295 3.82E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 PIRSF PIRSF005539 1 297 4.9E-107 T 13-10-2018 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 TIGRFAM TIGR01250 pro_imino_pep_2: proline-specific peptidase 14 293 6.7E-51 T 13-10-2018 IPR005945 Proline-specific peptidase GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 Gene3D G3DSA:3.40.50.1820 12 295 1.0E-62 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 Pfam PF12697 Alpha/beta hydrolase family 32 281 2.7E-17 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 105 119 1.8E-12 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 32 40 1.8E-12 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CS348_13180 80cc2894c3dfd53fc7b93d4a99fae521 297 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 59 70 1.8E-12 T 13-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 CS348_01875 93bb8c8fe4a0182f1ac18c47818cee49 103 Gene3D G3DSA:3.30.70.100 1 103 1.8E-44 T 13-10-2018 CS348_01875 93bb8c8fe4a0182f1ac18c47818cee49 103 SUPERFAMILY SSF54909 5 98 1.02E-34 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_01875 93bb8c8fe4a0182f1ac18c47818cee49 103 Pfam PF08803 Putative mono-oxygenase ydhR 5 99 5.2E-42 T 13-10-2018 IPR014910 Putative monooxygenase YdhR CS348_21355 bba1e6f1ae7d0a503bfed710482731d2 94 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 83 2.1E-10 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CS348_21355 bba1e6f1ae7d0a503bfed710482731d2 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 82 6.9E-12 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CS348_21355 bba1e6f1ae7d0a503bfed710482731d2 94 SUPERFAMILY SSF143011 1 82 4.58E-20 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CS348_21355 bba1e6f1ae7d0a503bfed710482731d2 94 Gene3D G3DSA:3.30.2310.20 1 94 3.1E-26 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 Gene3D G3DSA:2.30.30.280 213 281 6.2E-30 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 Pfam PF03054 tRNA methyl transferase 6 360 1.7E-143 T 13-10-2018 CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 6 361 40.81 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 6 360 1.2E-159 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 SUPERFAMILY SSF52402 4 295 1.7E-57 T 13-10-2018 CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 Gene3D G3DSA:3.40.50.620 1 211 1.2E-96 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_14235 ee513a8861b8c33835d92cf0ad397c89 368 Gene3D G3DSA:2.40.30.10 282 368 7.7E-35 T 13-10-2018 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 Gene3D G3DSA:3.20.19.10 652 891 2.9E-107 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 SUPERFAMILY SSF52016 630 890 4.12E-90 T 13-10-2018 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 Pfam PF00330 Aconitase family (aconitate hydratase) 69 562 1.5E-179 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 SUPERFAMILY SSF53732 10 626 4.84E-225 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 Gene3D G3DSA:3.30.499.10 373 590 2.2E-98 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 Gene3D G3DSA:1.10.1440.20 591 650 1.5E-17 T 13-10-2018 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 Gene3D G3DSA:3.30.499.20 6 372 1.8E-161 T 13-10-2018 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 18 890 0.0 T 13-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 Pfam PF00694 Aconitase C-terminal domain 691 818 8.7E-51 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 217 232 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 431 442 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 279 292 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 293 306 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 493 506 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 203 216 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 170 178 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 372 386 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_11320 88ab9b4d2080d7d645508ffe44b579fd 891 PRINTS PR00415 Aconitase family signature 146 159 2.4E-42 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CS348_15540 19d022de8895c2d6a2c074c08d65912e 333 SUPERFAMILY SSF53383 1 331 5.17E-114 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_15540 19d022de8895c2d6a2c074c08d65912e 333 Pfam PF01212 Beta-eliminating lyase 3 282 1.1E-95 T 13-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 CS348_15540 19d022de8895c2d6a2c074c08d65912e 333 Gene3D G3DSA:3.90.1150.10 245 333 1.5E-36 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_15540 19d022de8895c2d6a2c074c08d65912e 333 PIRSF PIRSF017617 1 333 5.7E-131 T 13-10-2018 IPR023603 Threonine aldolase CS348_15540 19d022de8895c2d6a2c074c08d65912e 333 Gene3D G3DSA:3.40.640.10 1 244 3.7E-95 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_05115 1e85322956f66bb12e677aae229fceea 472 TIGRFAM TIGR02628 fuculo_kin_coli: L-fuculokinase 5 463 5.4E-232 T 13-10-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 CS348_05115 1e85322956f66bb12e677aae229fceea 472 Hamap MF_00986 L-fuculokinase [fucK]. 3 463 60.721 T 13-10-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 CS348_05115 1e85322956f66bb12e677aae229fceea 472 SUPERFAMILY SSF53067 253 466 1.3E-40 T 13-10-2018 CS348_05115 1e85322956f66bb12e677aae229fceea 472 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 438 3.6E-20 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_05115 1e85322956f66bb12e677aae229fceea 472 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_05115 1e85322956f66bb12e677aae229fceea 472 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 249 7.2E-80 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_05115 1e85322956f66bb12e677aae229fceea 472 Gene3D G3DSA:3.30.420.40 1 241 5.8E-61 T 13-10-2018 CS348_05115 1e85322956f66bb12e677aae229fceea 472 PIRSF PIRSF000538 3 470 9.0E-80 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_05115 1e85322956f66bb12e677aae229fceea 472 Gene3D G3DSA:3.30.420.40 242 468 4.2E-38 T 13-10-2018 CS348_05115 1e85322956f66bb12e677aae229fceea 472 SUPERFAMILY SSF53067 5 252 1.39E-57 T 13-10-2018 CS348_05115 1e85322956f66bb12e677aae229fceea 472 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 351 371 - T 13-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_24925 0ce1c0314634c1a49d0efe64f3d09865 313 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 10 311 1.7E-74 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_24925 0ce1c0314634c1a49d0efe64f3d09865 313 Pfam PF04754 Putative transposase, YhgA-like 9 207 1.4E-84 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_15865 b14418544d76bab3dd1844801ac09f79 243 Gene3D G3DSA:3.40.190.10 108 201 6.4E-84 T 13-10-2018 CS348_15865 b14418544d76bab3dd1844801ac09f79 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 2 241 2.7E-93 T 13-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 CS348_15865 b14418544d76bab3dd1844801ac09f79 243 SMART SM00062 22 243 1.2E-87 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_15865 b14418544d76bab3dd1844801ac09f79 243 Gene3D G3DSA:3.40.190.10 26 240 6.4E-84 T 13-10-2018 CS348_15865 b14418544d76bab3dd1844801ac09f79 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_15865 b14418544d76bab3dd1844801ac09f79 243 SMART SM00079 22 243 8.3E-5 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CS348_15865 b14418544d76bab3dd1844801ac09f79 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 1.5E-68 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_15865 b14418544d76bab3dd1844801ac09f79 243 SUPERFAMILY SSF53850 1 242 2.06E-73 T 13-10-2018 CS348_21290 f7a6647e1bd97e639812640392902e77 162 Gene3D G3DSA:1.10.10.10 6 80 1.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21290 f7a6647e1bd97e639812640392902e77 162 Hamap MF_00173 Arginine repressor [argR]. 1 159 46.137 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_21290 f7a6647e1bd97e639812640392902e77 162 Gene3D G3DSA:3.30.1360.40 81 159 9.0E-20 T 13-10-2018 CS348_21290 f7a6647e1bd97e639812640392902e77 162 SUPERFAMILY SSF46785 8 77 8.17E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_21290 f7a6647e1bd97e639812640392902e77 162 Pfam PF01316 Arginine repressor, DNA binding domain 12 76 3.1E-14 T 13-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 CS348_21290 f7a6647e1bd97e639812640392902e77 162 Pfam PF02863 Arginine repressor, C-terminal domain 88 152 8.6E-13 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CS348_21290 f7a6647e1bd97e639812640392902e77 162 SUPERFAMILY SSF55252 87 155 1.31E-13 T 13-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 CS348_21290 f7a6647e1bd97e639812640392902e77 162 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 94 139 0.003 T 13-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 CS348_21290 f7a6647e1bd97e639812640392902e77 162 PRINTS PR01467 Bacterial arginine repressor signature 46 61 8.1E-14 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_21290 f7a6647e1bd97e639812640392902e77 162 PRINTS PR01467 Bacterial arginine repressor signature 95 108 8.1E-14 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_21290 f7a6647e1bd97e639812640392902e77 162 PRINTS PR01467 Bacterial arginine repressor signature 125 140 8.1E-14 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_21290 f7a6647e1bd97e639812640392902e77 162 PRINTS PR01467 Bacterial arginine repressor signature 29 42 8.1E-14 T 13-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 Gene3D G3DSA:3.40.50.2300 62 154 5.6E-26 T 13-10-2018 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 13-10-2018 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 7.9E-156 T 13-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 2 50 4.9E-19 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 Gene3D G3DSA:3.40.50.2300 155 334 2.5E-31 T 13-10-2018 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 SUPERFAMILY SSF53822 60 314 1.57E-42 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 SUPERFAMILY SSF47413 2 58 9.57E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 SMART SM00354 1 73 7.4E-32 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 Gene3D G3DSA:1.10.260.40 1 61 1.7E-28 T 13-10-2018 CS348_19745 fdb92a98baeab4dbed8432d06f58fc08 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 312 4.6E-14 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain CS348_09110 d9b20f81816ed68e6ecb2aaf1e8e4bd6 184 SUPERFAMILY SSF51161 19 177 1.52E-35 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_09110 d9b20f81816ed68e6ecb2aaf1e8e4bd6 184 TIGRFAM TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF 1 180 4.6E-118 T 13-10-2018 IPR024005 Colanic acid biosynthesis, acetyltransferase, WcaF CS348_09110 d9b20f81816ed68e6ecb2aaf1e8e4bd6 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 125 157 1.5E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_09110 d9b20f81816ed68e6ecb2aaf1e8e4bd6 184 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 133 161 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_09110 d9b20f81816ed68e6ecb2aaf1e8e4bd6 184 Gene3D G3DSA:2.160.10.10 17 183 5.5E-33 T 13-10-2018 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 13-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 6.7E-125 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 5.4E-82 T 13-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 Pfam PF00365 Phosphofructokinase 4 276 1.1E-106 T 13-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 SUPERFAMILY SSF53784 3 312 1.31E-113 T 13-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 Gene3D G3DSA:3.40.50.450 4 287 2.1E-120 T 13-10-2018 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 PIRSF PIRSF000532 1 320 1.1E-131 T 13-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 Gene3D G3DSA:3.40.50.460 143 252 2.1E-120 T 13-10-2018 CS348_23275 2add9ddebcfc11c97931aa5c4e1aa59d 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 46.956 T 13-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 CS348_07690 43cec100c63261402f5e60170c0c7545 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 13-10-2018 IPR020610 Thiolase, active site GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 Gene3D G3DSA:3.40.47.10 7 435 1.0E-113 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_07690 43cec100c63261402f5e60170c0c7545 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 13-10-2018 IPR020613 Thiolase, conserved site GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 SUPERFAMILY SSF53901 297 434 7.25E-33 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_07690 43cec100c63261402f5e60170c0c7545 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 2.2E-263 T 13-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CS348_07690 43cec100c63261402f5e60170c0c7545 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 2.8E-36 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 5.7E-133 T 13-10-2018 IPR002155 Thiolase GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 PIRSF PIRSF000429 9 436 8.5E-124 T 13-10-2018 IPR002155 Thiolase GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 73.371 T 13-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CS348_07690 43cec100c63261402f5e60170c0c7545 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 2.0E-58 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 13-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 CS348_07690 43cec100c63261402f5e60170c0c7545 436 SUPERFAMILY SSF53901 15 295 1.18E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_09955 9b6a939016e0a4494437671730edca6d 239 Pfam PF04539 Sigma-70 region 3 97 167 1.7E-19 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 PIRSF PIRSF000770 1 238 1.2E-41 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 Pfam PF04542 Sigma-70 region 2 16 88 1.7E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 SUPERFAMILY SSF88659 89 156 2.27E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_09955 9b6a939016e0a4494437671730edca6d 239 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 236 3.2E-33 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 63.812 T 13-10-2018 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CS348_09955 9b6a939016e0a4494437671730edca6d 239 Gene3D G3DSA:1.20.140.160 87 238 4.9E-48 T 13-10-2018 CS348_09955 9b6a939016e0a4494437671730edca6d 239 Pfam PF04545 Sigma-70, region 4 185 233 7.0E-17 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 PRINTS PR00046 Major sigma-70 factor signature 67 75 3.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 PRINTS PR00046 Major sigma-70 factor signature 189 201 3.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 PRINTS PR00046 Major sigma-70 factor signature 221 232 3.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 PRINTS PR00046 Major sigma-70 factor signature 43 56 3.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 PRINTS PR00046 Major sigma-70 factor signature 206 221 3.4E-13 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 Gene3D G3DSA:1.10.1740.10 4 85 7.9E-27 T 13-10-2018 CS348_09955 9b6a939016e0a4494437671730edca6d 239 SUPERFAMILY SSF88659 157 237 5.79E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CS348_09955 9b6a939016e0a4494437671730edca6d 239 SUPERFAMILY SSF88946 5 88 3.66E-23 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CS348_09955 9b6a939016e0a4494437671730edca6d 239 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 9.1E-87 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 Gene3D G3DSA:2.40.50.970 1 80 2.2E-25 T 13-10-2018 IPR037254 HupF/HypC superfamily CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 13-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 Pfam PF01455 HupF/HypC family 1 72 1.5E-25 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 SUPERFAMILY SSF159127 1 76 1.02E-23 T 13-10-2018 IPR037254 HupF/HypC superfamily CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.1E-24 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 45 61 2.1E-24 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 2.1E-24 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 63 75 2.1E-24 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_03575 ac9e5f22345cedda8bec9c12b2d68850 82 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 78 1.3E-29 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_02275 699313c16228c8246c85d953bc5892fc 54 Pfam PF10831 Protein of unknown function (DUF2556) 1 53 6.3E-43 T 13-10-2018 IPR022540 Protein of unknown function DUF2556 CS348_02275 699313c16228c8246c85d953bc5892fc 54 ProDom PD052549 YHDU TRANSMEMBRANE MEMBRANE PERIPLASMIC 1 54 4.0E-25 T 13-10-2018 IPR022540 Protein of unknown function DUF2556 CS348_10255 638202651bd7eb0554b514f54cd766f1 199 SUPERFAMILY SSF54001 8 184 7.06E-36 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_10255 638202651bd7eb0554b514f54cd766f1 199 Pfam PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family 8 184 2.7E-48 T 13-10-2018 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CS348_10255 638202651bd7eb0554b514f54cd766f1 199 Gene3D G3DSA:3.90.1720.10 5 188 3.8E-44 T 13-10-2018 CS348_00760 40b447d086e14ec11d2662733779891f 120 Pfam PF10928 Protein of unknown function (DUF2810) 66 117 4.5E-34 T 13-10-2018 IPR021230 Protein of unknown function DUF2810 CS348_00760 40b447d086e14ec11d2662733779891f 120 Gene3D G3DSA:3.30.1370.150 61 120 7.3E-38 T 13-10-2018 CS348_00760 40b447d086e14ec11d2662733779891f 120 Gene3D G3DSA:4.10.860.10 1 60 1.8E-36 T 13-10-2018 CS348_01280 6c20c1c54412186963f251e31036f81c 144 Pfam PF00582 Universal stress protein family 3 138 2.6E-21 T 13-10-2018 IPR006016 UspA CS348_01280 6c20c1c54412186963f251e31036f81c 144 SUPERFAMILY SSF52402 3 139 1.42E-32 T 13-10-2018 CS348_01280 6c20c1c54412186963f251e31036f81c 144 PIRSF PIRSF006276 1 141 3.8E-54 T 13-10-2018 IPR006015 Universal stress protein A CS348_01280 6c20c1c54412186963f251e31036f81c 144 Gene3D G3DSA:3.40.50.620 2 142 2.6E-51 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_25465 15f5ec63b0d1995b2dd9dc8d8086823b 231 Pfam PF13610 DDE domain 75 211 1.8E-49 T 13-10-2018 IPR032874 DDE domain CS348_25465 15f5ec63b0d1995b2dd9dc8d8086823b 231 Gene3D G3DSA:3.30.420.10 71 214 3.0E-5 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_25465 15f5ec63b0d1995b2dd9dc8d8086823b 231 SUPERFAMILY SSF53098 72 198 1.14E-11 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_11885 4483e209a6eed15c653a6133b241568b 263 SUPERFAMILY SSF100950 78 238 7.33E-26 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_11885 4483e209a6eed15c653a6133b241568b 263 Pfam PF00455 DeoR C terminal sensor domain 79 236 1.3E-45 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_11885 4483e209a6eed15c653a6133b241568b 263 Pfam PF08220 DeoR-like helix-turn-helix domain 8 65 5.6E-20 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_11885 4483e209a6eed15c653a6133b241568b 263 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_11885 4483e209a6eed15c653a6133b241568b 263 SMART SM00420 8 61 3.1E-16 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_11885 4483e209a6eed15c653a6133b241568b 263 SMART SM01134 77 237 5.7E-58 T 13-10-2018 CS348_12410 0f9893622d40a878c6d4d1ec686ff012 462 Gene3D G3DSA:3.40.605.10 14 451 5.0E-158 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_12410 0f9893622d40a878c6d4d1ec686ff012 462 SUPERFAMILY SSF53720 10 460 1.57E-142 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_12410 0f9893622d40a878c6d4d1ec686ff012 462 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 261 272 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_12410 0f9893622d40a878c6d4d1ec686ff012 462 Pfam PF00171 Aldehyde dehydrogenase family 9 457 9.2E-142 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_12410 0f9893622d40a878c6d4d1ec686ff012 462 Gene3D G3DSA:3.40.309.10 237 426 5.0E-158 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 SUPERFAMILY SSF51905 6 383 6.36E-62 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 Pfam PF01494 FAD binding domain 6 339 5.9E-28 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 Gene3D G3DSA:3.50.50.60 8 338 8.6E-104 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 9.6E-18 T 13-10-2018 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 9.6E-18 T 13-10-2018 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 9.6E-18 T 13-10-2018 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 9.6E-18 T 13-10-2018 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 Gene3D G3DSA:3.30.9.50 82 269 8.6E-104 T 13-10-2018 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 390 4.0E-129 T 13-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CS348_16900 bd3298cb14f7051beb2b4a5c911a5168 391 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 294 307 - T 13-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 CS348_15510 7ea310d0216d5664d6777ca13f8fa5eb 552 Pfam PF11398 Protein of unknown function (DUF2813) 1 375 2.8E-152 T 13-10-2018 IPR022602 Protein of unknown function DUF2813 CS348_15510 7ea310d0216d5664d6777ca13f8fa5eb 552 SUPERFAMILY SSF52540 1 332 2.8E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15510 7ea310d0216d5664d6777ca13f8fa5eb 552 Gene3D G3DSA:3.40.50.300 1 348 9.3E-12 T 13-10-2018 CS348_19290 aca20d3e56f3201a7edf482af1b09455 266 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 2 266 46.418 T 13-10-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 CS348_19290 aca20d3e56f3201a7edf482af1b09455 266 Gene3D G3DSA:3.40.50.1980 141 266 1.9E-35 T 13-10-2018 CS348_19290 aca20d3e56f3201a7edf482af1b09455 266 Pfam PF01497 Periplasmic binding protein 26 217 4.7E-24 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CS348_19290 aca20d3e56f3201a7edf482af1b09455 266 Gene3D G3DSA:3.40.50.1980 21 139 2.8E-33 T 13-10-2018 CS348_19290 aca20d3e56f3201a7edf482af1b09455 266 SUPERFAMILY SSF53807 25 262 5.49E-57 T 13-10-2018 CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 SUPERFAMILY SSF49584 133 221 1.83E-21 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 SUPERFAMILY SSF49354 16 139 1.94E-38 T 13-10-2018 IPR008962 PapD-like superfamily CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 Gene3D G3DSA:2.60.40.10 142 223 1.5E-24 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 22 139 3.2E-38 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 95 112 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 162 217 1.4E-16 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 Gene3D G3DSA:2.60.40.10 22 137 7.0E-39 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 PRINTS PR00969 Pili chaperone signature 22 31 3.1E-34 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 PRINTS PR00969 Pili chaperone signature 96 113 3.1E-34 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 PRINTS PR00969 Pili chaperone signature 157 172 3.1E-34 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 PRINTS PR00969 Pili chaperone signature 68 89 3.1E-34 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20395 ae5fce3c05161d58072ed638a047d9ff 227 PRINTS PR00969 Pili chaperone signature 121 136 3.1E-34 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_13825 44b9e2ca2777f0de347651efacd68759 138 Pfam PF00293 NUDIX domain 7 126 3.8E-20 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_13825 44b9e2ca2777f0de347651efacd68759 138 PRINTS PR00502 NUDIX hydrolase family signature 47 62 4.3E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_13825 44b9e2ca2777f0de347651efacd68759 138 PRINTS PR00502 NUDIX hydrolase family signature 33 47 4.3E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_13825 44b9e2ca2777f0de347651efacd68759 138 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_13825 44b9e2ca2777f0de347651efacd68759 138 Gene3D G3DSA:3.90.79.10 1 136 3.0E-44 T 13-10-2018 CS348_13825 44b9e2ca2777f0de347651efacd68759 138 SUPERFAMILY SSF55811 5 126 2.03E-35 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 SUPERFAMILY SSF55120 95 316 1.92E-67 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 SMART SM00363 20 79 9.9E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 Gene3D G3DSA:3.30.2350.10 92 319 1.5E-90 T 13-10-2018 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 SUPERFAMILY SSF55174 19 70 4.56E-9 T 13-10-2018 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 Gene3D G3DSA:3.10.290.10 10 72 1.1E-16 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 Pfam PF01479 S4 domain 20 66 1.7E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 Pfam PF00849 RNA pseudouridylate synthase 101 249 6.0E-30 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_14510 589cdd8d28149b08c76a0d0006648075 319 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 316 3.1E-101 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_23315 0a767e5a9012f7ad1b8047bba20cf186 111 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 27 105 9.3E-11 T 13-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 Gene3D G3DSA:3.20.20.70 21 401 3.3E-112 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 Pfam PF04055 Radical SAM superfamily 32 200 2.7E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 SUPERFAMILY SSF102114 32 362 7.32E-38 T 13-10-2018 CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 178 422 6.0E-18 T 13-10-2018 CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 Gene3D G3DSA:3.10.450.50 404 447 1.7E-8 T 13-10-2018 CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 Pfam PF13186 Iron-sulfur cluster-binding domain 293 353 1.5E-7 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 23 400 3.0E-148 T 13-10-2018 CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 292 381 2.4E-19 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 Pfam PF02810 SEC-C motif 428 446 9.4E-8 T 13-10-2018 IPR004027 SEC-C motif CS348_23975 ac2f13eef163d47682c860dde721f1a1 447 SUPERFAMILY SSF103642 426 446 1.57E-6 T 13-10-2018 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 38 266 1.5E-43 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 ProSitePatterns PS00449 ATP synthase a subunit signature. 206 215 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 SUPERFAMILY SSF81336 95 265 8.37E-50 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 Gene3D G3DSA:1.20.120.220 95 271 7.1E-71 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 Pfam PF00119 ATP synthase A chain 46 265 9.9E-56 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 PRINTS PR00123 ATP synthase A subunit signature 104 120 3.2E-15 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 PRINTS PR00123 ATP synthase A subunit signature 203 225 3.2E-15 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 PRINTS PR00123 ATP synthase A subunit signature 251 266 3.2E-15 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_24445 b0df6d97570c6987bea9d9c3a3da5950 271 Hamap MF_01393 ATP synthase subunit a [atpB]. 12 271 16.088 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CS348_16435 87b02975e7b2ae70a4e36fde5df91633 49 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 46 19.526 T 13-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 CS348_16435 87b02975e7b2ae70a4e36fde5df91633 49 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 48 1.1E-30 T 13-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 Hamap MF_00982 Transcriptional regulatory protein RcsA [rcsA]. 1 207 49.809 T 13-10-2018 IPR030866 Transcriptional regulatory protein RcsA GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 SUPERFAMILY SSF46894 131 186 8.16E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 Gene3D G3DSA:1.10.10.10 102 196 4.4E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 5.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 5.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 5.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 191 5.9E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 152 179 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_09830 0d3ab8f539de535909bb8759dfcc9f86 207 SMART SM00421 135 192 1.3E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_24440 0fef24ac38ca07ee83f2f66d9b687128 126 Pfam PF03899 ATP synthase I chain 13 108 4.0E-14 T 13-10-2018 IPR005598 ATP synthase protein I CS348_02455 95c42cf512b9991f68aa6f7544eeaf2d 205 SUPERFAMILY SSF117457 4 180 7.06E-58 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CS348_02455 95c42cf512b9991f68aa6f7544eeaf2d 205 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 13 181 1.0E-65 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CS348_02455 95c42cf512b9991f68aa6f7544eeaf2d 205 Pfam PF05683 Fumarase C-terminus 10 181 1.3E-37 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CS348_02455 95c42cf512b9991f68aa6f7544eeaf2d 205 Gene3D G3DSA:3.20.130.10 1 181 6.2E-65 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CS348_18265 52a53d4db32a73abf1ffdc84881055bd 171 Pfam PF04608 Phosphatidylglycerophosphatase A 22 162 1.6E-51 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 CS348_18265 52a53d4db32a73abf1ffdc84881055bd 171 PIRSF PIRSF006162 11 169 4.2E-58 T 13-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CS348_18265 52a53d4db32a73abf1ffdc84881055bd 171 SUPERFAMILY SSF101307 15 162 1.01E-47 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 SUPERFAMILY SSF52518 10 381 1.97E-74 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 SMART SM00861 319 484 1.1E-66 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 Gene3D G3DSA:3.40.50.970 318 491 1.4E-66 T 13-10-2018 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 Pfam PF02780 Transketolase, C-terminal domain 495 611 2.6E-26 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 11 620 0.0 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 12 282 1.8E-116 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 Gene3D G3DSA:3.40.50.920 495 620 6.1E-46 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 Pfam PF02779 Transketolase, pyrimidine binding domain 321 481 1.7E-39 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.513 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 SUPERFAMILY SSF52518 318 504 5.89E-58 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CS348_18255 3e06f194c5d68775547c1a94e86f09a9 620 SUPERFAMILY SSF52922 491 619 1.57E-31 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 Gene3D G3DSA:2.30.30.60 933 982 1.1E-10 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 SUPERFAMILY SSF50182 918 983 7.52E-17 T 13-10-2018 IPR010920 LSM domain superfamily CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 SUPERFAMILY SSF82861 834 916 1.15E-8 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 947 981 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 SUPERFAMILY SSF82689 985 1083 1.1E-16 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 Gene3D G3DSA:3.30.70.100 986 1078 8.9E-10 T 13-10-2018 CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 Pfam PF00924 Mechanosensitive ion channel 875 1074 9.6E-54 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 Pfam PF12795 Mechanosensitive ion channel porin domain 31 253 2.7E-54 T 13-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain CS348_21885 e2e24aea2927d6fa96d8b521018b9027 1108 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 478 814 9.2E-116 T 13-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 CS348_00235 7d2ddabbe3f8c9084db6f708994e4301 438 Gene3D G3DSA:1.20.1250.20 17 232 4.7E-49 T 13-10-2018 CS348_00235 7d2ddabbe3f8c9084db6f708994e4301 438 Pfam PF07690 Major Facilitator Superfamily 45 376 2.9E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_00235 7d2ddabbe3f8c9084db6f708994e4301 438 SUPERFAMILY SSF103473 12 424 3.4E-38 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00235 7d2ddabbe3f8c9084db6f708994e4301 438 Gene3D G3DSA:1.20.1250.20 239 429 7.4E-43 T 13-10-2018 CS348_00235 7d2ddabbe3f8c9084db6f708994e4301 438 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 21 424 6.6E-97 T 13-10-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 CS348_15630 461dfba1dd75537b0c9e655ef07e109c 642 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 46 400 1.3E-90 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_15630 461dfba1dd75537b0c9e655ef07e109c 642 Pfam PF10145 Phage-related minor tail protein 88 290 1.8E-32 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 Hamap MF_00268 Protein RecA [recA]. 7 331 51.004 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 ProSitePatterns PS00321 recA signature. 215 223 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 Pfam PF00154 recA bacterial DNA recombination protein 9 270 4.2E-142 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 PRINTS PR00142 RecA protein signature 129 158 1.1E-83 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 PRINTS PR00142 RecA protein signature 95 124 1.1E-83 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 PRINTS PR00142 RecA protein signature 167 196 1.1E-83 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 PRINTS PR00142 RecA protein signature 212 240 1.1E-83 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 PRINTS PR00142 RecA protein signature 299 316 1.1E-83 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 PRINTS PR00142 RecA protein signature 245 274 1.1E-83 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 6.0E-173 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 Gene3D G3DSA:3.30.250.10 271 329 4.4E-27 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 SUPERFAMILY SSF54752 272 327 7.19E-21 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 SUPERFAMILY SSF52540 6 269 4.58E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 Gene3D G3DSA:3.40.50.300 28 270 9.5E-83 T 13-10-2018 CS348_05895 3742cd8fa21d906c73de6d9255d127ff 353 SMART SM00382 59 230 4.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_02710 d67d1379da422c2abc60ab6cd5591249 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site CS348_02710 d67d1379da422c2abc60ab6cd5591249 323 SUPERFAMILY SSF48576 6 322 1.73E-100 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CS348_02710 d67d1379da422c2abc60ab6cd5591249 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site CS348_02710 d67d1379da422c2abc60ab6cd5591249 323 Gene3D G3DSA:1.10.600.10 1 323 1.9E-133 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CS348_02710 d67d1379da422c2abc60ab6cd5591249 323 Pfam PF00348 Polyprenyl synthetase 30 263 7.4E-77 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 CS348_14650 7df10ee3b3994bfcf4087aae49ce6278 372 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 76.365 T 13-10-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 CS348_14650 7df10ee3b3994bfcf4087aae49ce6278 372 SUPERFAMILY SSF51905 2 370 2.49E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_14650 7df10ee3b3994bfcf4087aae49ce6278 372 Gene3D G3DSA:3.30.9.10 59 313 1.6E-140 T 13-10-2018 CS348_14650 7df10ee3b3994bfcf4087aae49ce6278 372 Gene3D G3DSA:3.50.50.60 4 367 1.6E-140 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_14650 7df10ee3b3994bfcf4087aae49ce6278 372 Pfam PF01266 FAD dependent oxidoreductase 4 351 3.8E-45 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_14650 7df10ee3b3994bfcf4087aae49ce6278 372 SUPERFAMILY SSF54373 212 313 3.69E-19 T 13-10-2018 CS348_22580 034ec142943e5708b44cc448d42ac8a8 245 Gene3D G3DSA:3.10.560.10 148 217 9.7E-31 T 13-10-2018 CS348_22580 034ec142943e5708b44cc448d42ac8a8 245 Gene3D G3DSA:3.10.20.700 94 147 4.2E-13 T 13-10-2018 CS348_22580 034ec142943e5708b44cc448d42ac8a8 245 Gene3D G3DSA:3.10.20.700 19 78 9.8E-12 T 13-10-2018 CS348_22580 034ec142943e5708b44cc448d42ac8a8 245 Pfam PF06251 Capsule biosynthesis GfcC 20 244 1.0E-92 T 13-10-2018 IPR010425 Domain of unknown function DUF1017 CS348_17385 2542cca0760a5b2f293168e2b711d652 78 Pfam PF07338 Protein of unknown function (DUF1471) 25 78 2.9E-14 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_17385 2542cca0760a5b2f293168e2b711d652 78 Gene3D G3DSA:3.30.1660.10 12 78 3.9E-11 T 13-10-2018 IPR025543 Dodecin-like CS348_17385 2542cca0760a5b2f293168e2b711d652 78 SUPERFAMILY SSF159871 3 78 5.36E-15 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_05150 d66350037cb35f463c82c3f35556e09b 455 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.6E-94 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit CS348_05150 d66350037cb35f463c82c3f35556e09b 455 SUPERFAMILY SSF143548 16 158 1.36E-45 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_05150 d66350037cb35f463c82c3f35556e09b 455 Gene3D G3DSA:3.30.1330.90 10 159 2.0E-51 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 CS348_05150 d66350037cb35f463c82c3f35556e09b 455 Pfam PF03315 Serine dehydratase beta chain 3 155 2.0E-56 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_05150 d66350037cb35f463c82c3f35556e09b 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 1.3E-220 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 CS348_19850 ecdc9f760456969d705f99596d6cbdd8 206 Gene3D G3DSA:3.40.50.620 86 170 3.9E-5 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_19850 ecdc9f760456969d705f99596d6cbdd8 206 Pfam PF02698 DUF218 domain 41 185 1.5E-27 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CS348_23515 38fdc10dfb82bcae8462cd397d061d10 327 PIRSF PIRSF006470 5 325 1.3E-72 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 CS348_23515 38fdc10dfb82bcae8462cd397d061d10 327 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 275 2.1E-59 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 CS348_23515 38fdc10dfb82bcae8462cd397d061d10 327 Gene3D G3DSA:3.40.190.170 29 327 9.3E-93 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CS348_23515 38fdc10dfb82bcae8462cd397d061d10 327 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 308 4.3E-71 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 CS348_22215 68ba99f918e3f6ffade13166be235704 356 SMART SM00387 249 356 1.8E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_22215 68ba99f918e3f6ffade13166be235704 356 SMART SM00388 142 202 1.1E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_22215 68ba99f918e3f6ffade13166be235704 356 SMART SM00304 89 141 1.4E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_22215 68ba99f918e3f6ffade13166be235704 356 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 249 354 1.5E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_22215 68ba99f918e3f6ffade13166be235704 356 SUPERFAMILY SSF55874 192 354 9.95E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_22215 68ba99f918e3f6ffade13166be235704 356 Pfam PF00512 His Kinase A (phospho-acceptor) domain 144 200 5.0E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_22215 68ba99f918e3f6ffade13166be235704 356 Gene3D G3DSA:1.10.287.130 93 203 2.7E-16 T 13-10-2018 CS348_22215 68ba99f918e3f6ffade13166be235704 356 PRINTS PR00344 Bacterial sensor protein C-terminal signature 285 299 6.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22215 68ba99f918e3f6ffade13166be235704 356 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 334 6.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_22215 68ba99f918e3f6ffade13166be235704 356 Gene3D G3DSA:3.30.565.10 211 356 5.4E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_22215 68ba99f918e3f6ffade13166be235704 356 SUPERFAMILY SSF47384 126 199 2.75E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 Gene3D G3DSA:3.40.50.2020 7 302 3.3E-137 T 13-10-2018 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 Gene3D G3DSA:3.40.50.2020 148 290 3.3E-137 T 13-10-2018 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 1.5E-30 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.9E-49 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 SMART SM01400 4 121 5.7E-76 T 13-10-2018 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 49.752 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 SUPERFAMILY SSF53271 69 306 7.85E-67 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_10925 9345abfa17bfed25372c2eef21741fe4 315 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 1.8E-127 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CS348_12140 978b9b7534b5e7eb4325ef4a3ba08a58 293 Pfam PF00892 EamA-like transporter family 158 285 1.2E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_12140 978b9b7534b5e7eb4325ef4a3ba08a58 293 Pfam PF00892 EamA-like transporter family 6 137 3.1E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_12140 978b9b7534b5e7eb4325ef4a3ba08a58 293 SUPERFAMILY SSF103481 50 140 3.4E-5 T 13-10-2018 CS348_12140 978b9b7534b5e7eb4325ef4a3ba08a58 293 SUPERFAMILY SSF103481 191 291 1.57E-7 T 13-10-2018 CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 Hamap MF_01831 Cysteine desulfurase [sufS]. 1 406 74.963 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 7 405 2.0E-185 T 13-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 Gene3D G3DSA:3.90.1150.10 10 395 1.8E-175 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 Pfam PF00266 Aminotransferase class-V 26 394 3.5E-154 T 13-10-2018 IPR000192 Aminotransferase class V domain CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 SUPERFAMILY SSF53383 4 402 1.77E-128 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 Gene3D G3DSA:3.40.640.10 43 302 1.8E-175 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_13215 2f02de5f3f5012dd4684e3a480916d17 406 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 217 236 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CS348_18740 dff569436ed0f1633e86a8fd64e703c7 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 3 128 33.353 T 13-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 CS348_18740 dff569436ed0f1633e86a8fd64e703c7 133 Pfam PF07417 Transcriptional regulator Crl 5 122 5.8E-55 T 13-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 CS348_18740 dff569436ed0f1633e86a8fd64e703c7 133 Gene3D G3DSA:3.30.310.230 1 133 6.0E-62 T 13-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 CS348_22510 7871428039612191a9174215e94cc917 202 Pfam PF00717 Peptidase S24-like 114 179 1.9E-15 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CS348_22510 7871428039612191a9174215e94cc917 202 Pfam PF01726 LexA DNA binding domain 1 65 4.1E-31 T 13-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 CS348_22510 7871428039612191a9174215e94cc917 202 Gene3D G3DSA:2.10.109.10 80 202 1.7E-47 T 13-10-2018 CS348_22510 7871428039612191a9174215e94cc917 202 SUPERFAMILY SSF46785 3 70 1.82E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22510 7871428039612191a9174215e94cc917 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 2.2E-86 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CS348_22510 7871428039612191a9174215e94cc917 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.661 T 13-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 CS348_22510 7871428039612191a9174215e94cc917 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 2.4E-14 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_22510 7871428039612191a9174215e94cc917 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 2.4E-14 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_22510 7871428039612191a9174215e94cc917 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 2.4E-14 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_22510 7871428039612191a9174215e94cc917 202 SUPERFAMILY SSF51306 76 198 3.14E-38 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CS348_22510 7871428039612191a9174215e94cc917 202 Gene3D G3DSA:1.10.10.10 1 70 4.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 7.9E-97 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 Gene3D G3DSA:3.20.20.70 5 222 2.9E-84 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 5.9E-92 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 SUPERFAMILY SSF51366 3 218 8.95E-77 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_01770 6fcc068f10abe7f4c94a84da4f5de118 225 PIRSF PIRSF001461 1 225 7.4E-107 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CS348_14885 413d3ba46a67b325b7c31f367559e26e 198 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 196 4.7E-105 T 13-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CS348_14885 413d3ba46a67b325b7c31f367559e26e 198 SUPERFAMILY SSF52218 1 197 2.23E-63 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_14885 413d3ba46a67b325b7c31f367559e26e 198 Pfam PF03358 NADPH-dependent FMN reductase 13 143 5.2E-13 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CS348_14885 413d3ba46a67b325b7c31f367559e26e 198 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 198 46.963 T 13-10-2018 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CS348_14885 413d3ba46a67b325b7c31f367559e26e 198 Gene3D G3DSA:3.40.50.360 2 198 6.2E-79 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_01390 49710f8de8978b4a8f06517ff768f72f 351 PIRSF PIRSF003097 49 347 2.7E-108 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 CS348_01390 49710f8de8978b4a8f06517ff768f72f 351 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 45 350 7.6E-156 T 13-10-2018 IPR004513 Cell division protein FtsX GO:0016021 CS348_19210 66c90208742a4295639093d02803ec72 241 Pfam PF00696 Amino acid kinase family 10 219 9.4E-28 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_19210 66c90208742a4295639093d02803ec72 241 SUPERFAMILY SSF53633 7 240 5.11E-72 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_19210 66c90208742a4295639093d02803ec72 241 Gene3D G3DSA:3.40.1160.10 3 241 1.0E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_19210 66c90208742a4295639093d02803ec72 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.2E-103 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CS348_19210 66c90208742a4295639093d02803ec72 241 PIRSF PIRSF005650 4 241 4.0E-89 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 CS348_19210 66c90208742a4295639093d02803ec72 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 43.443 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CS348_21185 0ef3d626c87f3e29175e5e0d92f4afe2 439 PIRSF PIRSF002746 1 439 6.5E-158 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_21185 0ef3d626c87f3e29175e5e0d92f4afe2 439 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 3.4E-199 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_21185 0ef3d626c87f3e29175e5e0d92f4afe2 439 Pfam PF02447 GntP family permease 1 436 1.4E-183 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 Gene3D G3DSA:3.40.50.1970 450 643 9.4E-58 T 13-10-2018 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 Gene3D G3DSA:1.20.1090.10 645 865 3.7E-61 T 13-10-2018 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 SUPERFAMILY SSF56796 449 868 1.57E-118 T 13-10-2018 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 Gene3D G3DSA:3.40.605.10 10 444 1.6E-184 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 SUPERFAMILY SSF53720 6 453 8.64E-86 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 Gene3D G3DSA:3.40.309.10 218 404 1.6E-184 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 3.4E-114 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 Pfam PF00171 Aldehyde dehydrogenase family 5 399 9.2E-29 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 PIRSF PIRSF000111 1 866 0.0 T 13-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 CS348_11100 f365a33de30f67e2f2517f58257c56fc 892 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_12795 eb883c1f3f8d6bd4680716bc54be3283 230 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 199 4.2E-62 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CS348_12795 eb883c1f3f8d6bd4680716bc54be3283 230 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 7 209 1.4E-81 T 13-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 CS348_12795 eb883c1f3f8d6bd4680716bc54be3283 230 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 27.54 T 13-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 CS348_12795 eb883c1f3f8d6bd4680716bc54be3283 230 PIRSF PIRSF006102 1 219 3.6E-80 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CS348_24200 bdc7fa4962116fe9cd20c54c32b01b5a 348 Pfam PF02706 Chain length determinant protein 15 71 9.0E-15 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 CS348_24200 bdc7fa4962116fe9cd20c54c32b01b5a 348 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 8 347 57.317 T 13-10-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 CS348_24200 bdc7fa4962116fe9cd20c54c32b01b5a 348 SUPERFAMILY SSF160355 54 318 2.09E-87 T 13-10-2018 CS348_22290 6ff45dfb63d7f1058404d2357f6dfc0d 188 SUPERFAMILY SSF48695 5 169 6.4E-32 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_22290 6ff45dfb63d7f1058404d2357f6dfc0d 188 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 134 171 5.6E-5 T 13-10-2018 IPR010177 Doubled CXXCH motif CS348_22290 6ff45dfb63d7f1058404d2357f6dfc0d 188 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 38 171 8.7E-58 T 13-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 CS348_22290 6ff45dfb63d7f1058404d2357f6dfc0d 188 Gene3D G3DSA:3.90.10.10 118 181 1.5E-7 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 Pfam PF00361 Proton-conducting membrane transporter 133 425 2.0E-99 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 1.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 58 82 1.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 1.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 417 439 1.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 7.1E-23 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 1.9E-54 T 13-10-2018 CS348_08060 a5f96c2927f9f588cb1fa6dd843d5590 613 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 610 7.8E-238 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 751 898 1.8E-13 T 13-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 281 373 5.0E-22 T 13-10-2018 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Pfam PF01835 MG2 domain 380 471 5.0E-20 T 13-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 PIRSF PIRSF038980 1 1644 0.0 T 13-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 SMART SM01360 960 1049 2.1E-17 T 13-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 SMART SM01359 750 898 5.8E-32 T 13-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Gene3D G3DSA:1.50.10.20 1164 1430 2.4E-29 T 13-10-2018 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Pfam PF00207 Alpha-2-macroglobulin family 967 1047 1.5E-5 T 13-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1175 1192 1.8E-4 T 13-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 SUPERFAMILY SSF48239 1169 1425 3.81E-45 T 13-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid CS348_06895 929c6d8fb5075407bc98324c28871aa7 1644 Gene3D G3DSA:2.60.40.1930 381 475 2.3E-5 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 Gene3D G3DSA:3.40.50.1980 123 296 1.1E-60 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 SUPERFAMILY SSF53807 34 292 9.81E-56 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 Pfam PF01497 Periplasmic binding protein 38 270 2.1E-24 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 Gene3D G3DSA:3.40.50.1980 32 120 1.5E-20 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 273 286 2.8E-59 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 208 226 2.8E-59 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 55 73 2.8E-59 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 86 101 2.8E-59 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 236 253 2.8E-59 T 13-10-2018 CS348_19320 a7b996ec6310c5ec8fafdb4a0bdc2c43 296 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 184 199 2.8E-59 T 13-10-2018 CS348_00140 bdb82854d47866dcc28bc10f16443b89 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 51.518 T 13-10-2018 IPR023728 Small heat shock protein IbpA CS348_00140 bdb82854d47866dcc28bc10f16443b89 137 Gene3D G3DSA:2.60.40.790 33 137 2.0E-21 T 13-10-2018 IPR008978 HSP20-like chaperone CS348_00140 bdb82854d47866dcc28bc10f16443b89 137 SUPERFAMILY SSF49764 30 137 5.23E-20 T 13-10-2018 IPR008978 HSP20-like chaperone CS348_00140 bdb82854d47866dcc28bc10f16443b89 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 8.8E-23 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain CS348_04545 be23cddfecde7c9a65ad86c3c6208004 147 SUPERFAMILY SSF55804 1 145 3.01E-30 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_04545 be23cddfecde7c9a65ad86c3c6208004 147 Gene3D G3DSA:3.40.930.10 1 147 9.9E-50 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_04545 be23cddfecde7c9a65ad86c3c6208004 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 145 6.7E-25 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 PIRSF PIRSF006092 1 158 1.4E-56 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 34.242 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 5.4E-61 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 13-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 Gene3D G3DSA:3.10.50.30 76 158 6.8E-34 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 SUPERFAMILY SSF54534 81 157 3.14E-25 T 13-10-2018 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 6.0E-30 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 SUPERFAMILY SSF46557 3 78 2.35E-29 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 Gene3D G3DSA:1.10.287.180 1 75 3.3E-33 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CS348_02740 a4b6f2eef4d2e252585856f99ff9311f 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 5.0E-32 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 SUPERFAMILY SSF52540 16 821 1.2E-109 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Gene3D G3DSA:3.40.50.300 445 846 3.8E-175 T 13-10-2018 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Gene3D G3DSA:3.90.320.10 889 1180 7.5E-122 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Gene3D G3DSA:1.10.486.10 583 728 3.8E-175 T 13-10-2018 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 436 2.9E-64 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 6 1173 23.165 T 13-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Pfam PF13361 UvrD-like helicase C-terminal domain 546 809 3.6E-17 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 8 1172 0.0 T 13-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 SUPERFAMILY SSF52980 899 1174 2.04E-93 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Gene3D G3DSA:3.40.50.300 8 436 1.6E-174 T 13-10-2018 CS348_05030 36547683d8c9d87619547d7f159e2d40 1181 Gene3D G3DSA:1.10.3170.10 155 349 1.6E-174 T 13-10-2018 CS348_20555 8cf348ca1c2c15f8e3a1a55f1507ea79 71 Gene3D G3DSA:3.10.350.10 4 70 2.1E-8 T 13-10-2018 IPR036779 LysM domain superfamily CS348_20555 8cf348ca1c2c15f8e3a1a55f1507ea79 71 Pfam PF05489 Phage Tail Protein X 6 60 1.5E-17 T 13-10-2018 IPR008861 Phage Tail Protein X-like CS348_12525 0a01c18a96542304b2d0e05012e0e62e 113 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 2 113 27.812 T 13-10-2018 IPR009700 Protein of unknown function DUF1283 CS348_12525 0a01c18a96542304b2d0e05012e0e62e 113 Pfam PF06932 Protein of unknown function (DUF1283) 32 113 8.1E-42 T 13-10-2018 IPR009700 Protein of unknown function DUF1283 CS348_12525 0a01c18a96542304b2d0e05012e0e62e 113 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 1 113 2.0E-61 T 13-10-2018 IPR009700 Protein of unknown function DUF1283 CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 143 8.9E-23 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 PRINTS PR00969 Pili chaperone signature 125 140 1.2E-6 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 PRINTS PR00969 Pili chaperone signature 159 174 1.2E-6 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 PRINTS PR00969 Pili chaperone signature 74 95 1.2E-6 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 Gene3D G3DSA:2.60.40.10 32 143 9.2E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 SUPERFAMILY SSF49584 147 229 4.45E-12 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 SUPERFAMILY SSF49354 24 143 1.91E-25 T 13-10-2018 IPR008962 PapD-like superfamily CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 Gene3D G3DSA:2.60.40.10 145 227 2.2E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20510 a41fda4773d222d7b802a81e9297b8e2 235 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 164 225 1.5E-7 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_19095 4611642592422f2a407841a9ec28916d 136 Gene3D G3DSA:3.30.160.20 1 134 1.0E-36 T 13-10-2018 CS348_19095 4611642592422f2a407841a9ec28916d 136 SUPERFAMILY SSF75620 7 111 2.2E-14 T 13-10-2018 CS348_19095 4611642592422f2a407841a9ec28916d 136 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CS348_19095 4611642592422f2a407841a9ec28916d 136 Pfam PF00472 RF-1 domain 8 125 1.7E-24 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CS348_11620 082954e621cce6e77cdaf2a8358b5e06 228 Pfam PF03483 B3/4 domain 63 194 6.7E-16 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CS348_11620 082954e621cce6e77cdaf2a8358b5e06 228 SUPERFAMILY SSF56037 49 220 5.23E-25 T 13-10-2018 CS348_11620 082954e621cce6e77cdaf2a8358b5e06 228 SMART SM00873 61 217 1.6E-13 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 5.0E-33 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 Gene3D G3DSA:1.10.287.40 1 104 2.0E-22 T 13-10-2018 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 SUPERFAMILY SSF55681 116 424 6.36E-100 T 13-10-2018 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 PIRSF PIRSF001529 1 430 2.9E-185 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 1.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 1.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 1.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 1.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 1.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 Gene3D G3DSA:3.30.930.10 105 430 1.4E-117 T 13-10-2018 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 228 406 6.2E-37 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 1.4E-184 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 SUPERFAMILY SSF46589 1 112 1.73E-31 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CS348_15400 6932f300ca6a9a318058b921b0322f85 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 41.668 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CS348_05875 bc93ce3ac1b82625c5d6f302596943e0 187 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 5 171 6.3E-76 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 CS348_05875 bc93ce3ac1b82625c5d6f302596943e0 187 PIRSF PIRSF038321 2 182 1.9E-88 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 CS348_05875 bc93ce3ac1b82625c5d6f302596943e0 187 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 181 4.9E-112 T 13-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 CS348_10755 2e279d1285f288501afc06354df23b84 110 Pfam PF05166 YcgL domain 16 88 1.0E-32 T 13-10-2018 IPR027354 YcgL domain CS348_10755 2e279d1285f288501afc06354df23b84 110 Hamap MF_01866 Protein YcgL [ycgL]. 14 101 27.427 T 13-10-2018 IPR027354 YcgL domain CS348_10755 2e279d1285f288501afc06354df23b84 110 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 14 95 2.0E-42 T 13-10-2018 IPR027354 YcgL domain CS348_10755 2e279d1285f288501afc06354df23b84 110 Gene3D G3DSA:3.10.510.20 12 87 5.0E-32 T 13-10-2018 IPR038068 YcgL-like superfamily CS348_10755 2e279d1285f288501afc06354df23b84 110 SUPERFAMILY SSF160191 8 107 5.89E-42 T 13-10-2018 IPR038068 YcgL-like superfamily CS348_01345 031116123e1f581142a41cac317ed4be 81 Pfam PF01206 Sulfurtransferase TusA 10 79 2.4E-24 T 13-10-2018 IPR001455 TusA-like domain CS348_01345 031116123e1f581142a41cac317ed4be 81 SUPERFAMILY SSF64307 5 79 1.44E-26 T 13-10-2018 IPR036868 TusA-like domain superfamily CS348_01345 031116123e1f581142a41cac317ed4be 81 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 29.521 T 13-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 CS348_01345 031116123e1f581142a41cac317ed4be 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 13-10-2018 IPR001455 TusA-like domain CS348_01345 031116123e1f581142a41cac317ed4be 81 Gene3D G3DSA:3.30.110.40 1 80 1.5E-32 T 13-10-2018 IPR036868 TusA-like domain superfamily CS348_09370 fa2d1bb39fa9cf1252b56a193d687217 111 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 11 98 3.0E-43 T 13-10-2018 IPR007458 Protein of unknown function DUF496 CS348_09370 fa2d1bb39fa9cf1252b56a193d687217 111 PIRSF PIRSF028773 1 111 3.2E-55 T 13-10-2018 IPR007458 Protein of unknown function DUF496 CS348_09370 fa2d1bb39fa9cf1252b56a193d687217 111 Pfam PF04363 Protein of unknown function (DUF496) 8 99 6.2E-46 T 13-10-2018 IPR007458 Protein of unknown function DUF496 CS348_09370 fa2d1bb39fa9cf1252b56a193d687217 111 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 8 102 25.719 T 13-10-2018 IPR007458 Protein of unknown function DUF496 CS348_05185 0cfc61b2196e07a32154bd60f084cb89 260 Gene3D G3DSA:3.30.2350.10 3 235 4.9E-60 T 13-10-2018 CS348_05185 0cfc61b2196e07a32154bd60f084cb89 260 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05185 0cfc61b2196e07a32154bd60f084cb89 260 SUPERFAMILY SSF55120 2 239 8.48E-60 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_05185 0cfc61b2196e07a32154bd60f084cb89 260 Pfam PF00849 RNA pseudouridylate synthase 11 170 2.1E-29 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CS348_16305 d6471bcfe2ea805721487f9eed21378d 83 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 4 83 2.4E-26 T 13-10-2018 CS348_16305 d6471bcfe2ea805721487f9eed21378d 83 Gene3D G3DSA:3.10.20.30 3 83 1.1E-27 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_16305 d6471bcfe2ea805721487f9eed21378d 83 Pfam PF02597 ThiS family 6 83 4.8E-22 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 CS348_16305 d6471bcfe2ea805721487f9eed21378d 83 SUPERFAMILY SSF54285 3 83 7.48E-24 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 SUPERFAMILY SSF52540 4 171 3.54E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 Pfam PF02421 Ferrous iron transport protein B 5 162 1.9E-64 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 Pfam PF07670 Nucleoside recognition 512 689 8.1E-37 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 Pfam PF07670 Nucleoside recognition 353 443 6.2E-13 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 687 1.1E-246 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 Pfam PF07664 Ferrous iron transport protein B C terminus 455 507 1.0E-21 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 157 1.3E-11 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_01640 a505226f8623ecc5e0cdc9264a0a716b 772 Gene3D G3DSA:3.40.50.300 1 174 2.9E-49 T 13-10-2018 CS348_15000 0a80946708ee1275a883aed69d162312 170 SUPERFAMILY SSF50475 9 162 1.77E-45 T 13-10-2018 CS348_15000 0a80946708ee1275a883aed69d162312 170 Gene3D G3DSA:2.30.110.10 2 167 1.0E-37 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CS348_15000 0a80946708ee1275a883aed69d162312 170 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 10 162 1.8E-77 T 13-10-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 CS348_15000 0a80946708ee1275a883aed69d162312 170 SMART SM00903 14 161 2.7E-44 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CS348_15000 0a80946708ee1275a883aed69d162312 170 Pfam PF01613 Flavin reductase like domain 14 162 6.0E-26 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CS348_01265 21b35389e1f88685948f8a02be7fe64a 680 Pfam PF01432 Peptidase family M3 222 677 3.8E-176 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 CS348_01265 21b35389e1f88685948f8a02be7fe64a 680 Gene3D G3DSA:1.10.1370.40 13 675 1.5E-270 T 13-10-2018 CS348_01265 21b35389e1f88685948f8a02be7fe64a 680 Gene3D G3DSA:1.10.1370.10 140 610 1.5E-270 T 13-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CS348_01265 21b35389e1f88685948f8a02be7fe64a 680 SUPERFAMILY SSF55486 1 677 3.42E-215 T 13-10-2018 CS348_01905 c3c0455652534f64a27e3a0c8f43a22a 196 Gene3D G3DSA:2.40.10.330 71 121 1.3E-60 T 13-10-2018 CS348_01905 c3c0455652534f64a27e3a0c8f43a22a 196 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 1.5E-9 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CS348_01905 c3c0455652534f64a27e3a0c8f43a22a 196 Gene3D G3DSA:3.10.50.40 3 154 1.3E-60 T 13-10-2018 CS348_01905 c3c0455652534f64a27e3a0c8f43a22a 196 SUPERFAMILY SSF54534 2 140 1.1E-33 T 13-10-2018 CS348_07440 05f1b2e3e1950d7c4bbc27b0ab22057e 72 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 3.0E-25 T 13-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor CS348_07440 05f1b2e3e1950d7c4bbc27b0ab22057e 72 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 5.2E-29 T 13-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor CS348_08945 b087780f8d8d469e63bcbdd9a83b3a40 350 Pfam PF01791 DeoC/LacD family aldolase 69 326 2.6E-73 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_08945 b087780f8d8d469e63bcbdd9a83b3a40 350 SMART SM01133 68 326 1.5E-38 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_08945 b087780f8d8d469e63bcbdd9a83b3a40 350 SUPERFAMILY SSF51569 56 344 6.59E-65 T 13-10-2018 CS348_08945 b087780f8d8d469e63bcbdd9a83b3a40 350 Gene3D G3DSA:3.20.20.70 39 349 8.8E-74 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02620 6978c58d7b9711015797eb3a398c36f9 284 Pfam PF03668 P-loop ATPase protein family 1 282 1.1E-146 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CS348_02620 6978c58d7b9711015797eb3a398c36f9 284 PIRSF PIRSF005052 1 284 6.3E-114 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CS348_02620 6978c58d7b9711015797eb3a398c36f9 284 SUPERFAMILY SSF52540 2 151 4.46E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02620 6978c58d7b9711015797eb3a398c36f9 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.978 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.5E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.5E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.5E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.5E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.5E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 504 1.5E-238 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 9.3E-82 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 PIRSF PIRSF039101 1 505 3.4E-206 T 13-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 1.0E-15 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 Gene3D G3DSA:3.30.930.10 155 499 9.0E-137 T 13-10-2018 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 SUPERFAMILY SSF50249 13 155 7.35E-48 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 Gene3D G3DSA:2.40.50.140 15 154 7.7E-45 T 13-10-2018 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.496 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CS348_04780 bca3ccc91564f7c93044e57f1a478b92 505 SUPERFAMILY SSF55681 162 502 3.2E-121 T 13-10-2018 CS348_21720 218e14599934eb0666658049ed44ec18 249 SUPERFAMILY SSF53474 16 249 6.1E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_21720 218e14599934eb0666658049ed44ec18 249 Pfam PF00326 Prolyl oligopeptidase family 50 248 1.2E-11 T 13-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 CS348_21720 218e14599934eb0666658049ed44ec18 249 Gene3D G3DSA:3.40.50.1820 1 249 3.1E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_01620 5b7b10eb86aa499c9c0e47d341cff9fb 227 Pfam PF00156 Phosphoribosyl transferase domain 154 224 1.4E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CS348_01620 5b7b10eb86aa499c9c0e47d341cff9fb 227 Gene3D G3DSA:3.40.50.2020 86 226 1.6E-16 T 13-10-2018 CS348_01620 5b7b10eb86aa499c9c0e47d341cff9fb 227 TIGRFAM TIGR00201 comF: comF family protein 23 225 1.1E-72 T 13-10-2018 IPR005222 Competence protein ComF CS348_01620 5b7b10eb86aa499c9c0e47d341cff9fb 227 SUPERFAMILY SSF53271 45 225 3.02E-36 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_03570 eb32646c640685f952d7a849e21c9925 113 Hamap MF_02099 Hydrogenase maturation factor HybF [hybF]. 1 113 40.924 T 13-10-2018 IPR039002 Hydrogenase maturation factor HybF GO:0016151|GO:0051604 CS348_03570 eb32646c640685f952d7a849e21c9925 113 Gene3D G3DSA:3.30.2320.80 1 113 2.5E-30 T 13-10-2018 CS348_03570 eb32646c640685f952d7a849e21c9925 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 21.485 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_03570 eb32646c640685f952d7a849e21c9925 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 3.5E-43 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_03570 eb32646c640685f952d7a849e21c9925 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 2.4E-32 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_03570 eb32646c640685f952d7a849e21c9925 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site CS348_03570 eb32646c640685f952d7a849e21c9925 113 PIRSF PIRSF004761 1 113 3.9E-37 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 CS348_15320 89ca83670f15d0db75512915806d4528 557 Gene3D G3DSA:2.40.50.140 6 97 1.3E-17 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-20 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_15320 89ca83670f15d0db75512915806d4528 557 Pfam PF00575 S1 RNA binding domain 361 434 9.5E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_15320 89ca83670f15d0db75512915806d4528 557 Pfam PF00575 S1 RNA binding domain 190 260 1.9E-21 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_15320 89ca83670f15d0db75512915806d4528 557 Pfam PF00575 S1 RNA binding domain 104 171 8.3E-10 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_15320 89ca83670f15d0db75512915806d4528 557 Pfam PF00575 S1 RNA binding domain 449 520 2.8E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_15320 89ca83670f15d0db75512915806d4528 557 Pfam PF00575 S1 RNA binding domain 20 78 7.8E-7 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_15320 89ca83670f15d0db75512915806d4528 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 1.0E-240 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CS348_15320 89ca83670f15d0db75512915806d4528 557 Gene3D G3DSA:2.40.50.140 444 528 9.7E-22 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 Gene3D G3DSA:2.40.50.140 358 443 6.4E-24 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 Gene3D G3DSA:2.40.50.140 269 357 1.1E-31 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 Gene3D G3DSA:2.40.50.140 98 181 3.7E-7 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 SUPERFAMILY SSF50249 429 535 8.58E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15320 89ca83670f15d0db75512915806d4528 557 SUPERFAMILY SSF50249 255 367 1.0E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15320 89ca83670f15d0db75512915806d4528 557 SUPERFAMILY SSF50249 189 277 5.59E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15320 89ca83670f15d0db75512915806d4528 557 SUPERFAMILY SSF50249 342 440 4.1E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15320 89ca83670f15d0db75512915806d4528 557 Gene3D G3DSA:2.40.50.140 187 268 1.3E-27 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PIRSF PIRSF002111 1 534 1.4E-220 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 2.3E-99 T 13-10-2018 CS348_15320 89ca83670f15d0db75512915806d4528 557 SUPERFAMILY SSF50249 1 112 9.43E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15320 89ca83670f15d0db75512915806d4528 557 SMART SM00316 190 260 1.4E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15320 89ca83670f15d0db75512915806d4528 557 SMART SM00316 275 347 2.2E-27 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15320 89ca83670f15d0db75512915806d4528 557 SMART SM00316 19 87 6.8E-5 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15320 89ca83670f15d0db75512915806d4528 557 SMART SM00316 362 434 3.4E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15320 89ca83670f15d0db75512915806d4528 557 SMART SM00316 103 171 2.0E-8 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15320 89ca83670f15d0db75512915806d4528 557 SMART SM00316 449 520 3.2E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15320 89ca83670f15d0db75512915806d4528 557 SUPERFAMILY SSF50249 106 185 3.43E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_12595 60f45c41a9a0b1259028c035bf92aa16 231 Gene3D G3DSA:3.40.50.300 2 220 6.3E-51 T 13-10-2018 CS348_12595 60f45c41a9a0b1259028c035bf92aa16 231 SUPERFAMILY SSF52540 1 212 3.02E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_12595 60f45c41a9a0b1259028c035bf92aa16 231 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 214 23.889 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CS348_12595 60f45c41a9a0b1259028c035bf92aa16 231 Pfam PF13500 AAA domain 4 207 2.5E-29 T 13-10-2018 CS348_12595 60f45c41a9a0b1259028c035bf92aa16 231 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 172 3.6E-39 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CS348_12595 60f45c41a9a0b1259028c035bf92aa16 231 PIRSF PIRSF006755 1 224 1.0E-61 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CS348_09080 a75db274d02a88a8aabff1afe90cb5d8 719 Pfam PF13807 G-rich domain on putative tyrosine kinase 366 446 6.2E-31 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain CS348_09080 a75db274d02a88a8aabff1afe90cb5d8 719 Pfam PF13614 AAA domain 537 652 2.0E-11 T 13-10-2018 IPR025669 AAA domain CS348_09080 a75db274d02a88a8aabff1afe90cb5d8 719 Pfam PF02706 Chain length determinant protein 15 106 5.9E-22 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 CS348_09080 a75db274d02a88a8aabff1afe90cb5d8 719 SUPERFAMILY SSF52540 526 706 5.63E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09080 a75db274d02a88a8aabff1afe90cb5d8 719 Gene3D G3DSA:3.40.50.300 441 719 4.2E-85 T 13-10-2018 CS348_09080 a75db274d02a88a8aabff1afe90cb5d8 719 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 507 710 2.6E-45 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 CS348_19330 4239eb765dc346542bdff537960750a4 729 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 729 2.8E-172 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CS348_19330 4239eb765dc346542bdff537960750a4 729 Pfam PF00593 TonB dependent receptor 272 728 6.5E-62 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_19330 4239eb765dc346542bdff537960750a4 729 Gene3D G3DSA:2.40.170.20 194 729 7.9E-141 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_19330 4239eb765dc346542bdff537960750a4 729 SUPERFAMILY SSF56935 38 729 1.79E-139 T 13-10-2018 CS348_19330 4239eb765dc346542bdff537960750a4 729 Gene3D G3DSA:2.170.130.10 53 193 9.2E-51 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_19330 4239eb765dc346542bdff537960750a4 729 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 47 - T 13-10-2018 IPR010916 TonB box, conserved site CS348_19330 4239eb765dc346542bdff537960750a4 729 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 712 729 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site CS348_19330 4239eb765dc346542bdff537960750a4 729 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 181 5.7E-23 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_13790 2d1d9de300709904b1cba1055508c2aa 322 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 318 1.4E-73 T 13-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 CS348_13790 2d1d9de300709904b1cba1055508c2aa 322 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 322 155.715 T 13-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 CS348_13790 2d1d9de300709904b1cba1055508c2aa 322 Gene3D G3DSA:3.40.630.10 1 322 2.4E-114 T 13-10-2018 CS348_13790 2d1d9de300709904b1cba1055508c2aa 322 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 318 5.9E-133 T 13-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 CS348_13790 2d1d9de300709904b1cba1055508c2aa 322 SUPERFAMILY SSF53187 1 320 1.69E-92 T 13-10-2018 CS348_13790 2d1d9de300709904b1cba1055508c2aa 322 PIRSF PIRSF017020 1 322 1.5E-114 T 13-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 CS348_17380 0f837033da7abbd6790618df1643c05a 186 Pfam PF04224 Protein of unknown function, DUF417 3 180 5.4E-75 T 13-10-2018 IPR007339 Inner membrane protein RclC-like CS348_17380 0f837033da7abbd6790618df1643c05a 186 PIRSF PIRSF028065 83 182 1.1E-10 T 13-10-2018 IPR016865 Inner membrane protein RclC CS348_17380 0f837033da7abbd6790618df1643c05a 186 PIRSF PIRSF028065 7 60 1.4E-11 T 13-10-2018 IPR016865 Inner membrane protein RclC CS348_18845 3d86d86a42be01b466d0b94d21200fa9 352 SUPERFAMILY SSF53335 12 350 3.1E-57 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_18845 3d86d86a42be01b466d0b94d21200fa9 352 Pfam PF00145 C-5 cytosine-specific DNA methylase 278 347 3.1E-10 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_18845 3d86d86a42be01b466d0b94d21200fa9 352 Pfam PF00145 C-5 cytosine-specific DNA methylase 18 208 2.7E-26 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CS348_18845 3d86d86a42be01b466d0b94d21200fa9 352 Gene3D G3DSA:3.40.50.150 9 213 3.7E-39 T 13-10-2018 CS348_18845 3d86d86a42be01b466d0b94d21200fa9 352 Gene3D G3DSA:3.90.120.10 276 336 8.7E-8 T 13-10-2018 CS348_18845 3d86d86a42be01b466d0b94d21200fa9 352 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 80 92 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 311 1.1E-140 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 SUPERFAMILY SSF52440 2 122 1.04E-46 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 Gene3D G3DSA:3.30.1490.20 137 196 1.0E-29 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 Hamap MF_00162 Glutathione synthetase [gshB]. 1 315 181.641 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 1.7E-78 T 13-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 SUPERFAMILY SSF56059 123 312 2.29E-60 T 13-10-2018 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 Gene3D G3DSA:3.40.50.20 1 129 2.2E-53 T 13-10-2018 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 Gene3D G3DSA:3.30.470.20 197 300 5.0E-39 T 13-10-2018 CS348_04480 f11aafee6a3a7dae2e087b915d3d1677 315 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 3.4E-48 T 13-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 10 232 9.0E-13 T 13-10-2018 CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 SUPERFAMILY SSF56784 7 232 2.53E-44 T 13-10-2018 IPR036412 HAD-like superfamily CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 TIGRFAM TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family 9 267 2.3E-91 T 13-10-2018 IPR006381 HAD-superfamily hydrolase, superfamily IIB, MPGP GO:0005737|GO:0050531|GO:0051479 KEGG: 00051+3.1.3.70|MetaCyc: PWY-5656 CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 Gene3D G3DSA:3.40.50.1000 9 231 1.0E-76 T 13-10-2018 IPR023214 HAD superfamily CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 9 231 5.0E-40 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 ProSitePatterns PS01228 Hypothetical cof family signature 1. 9 20 - T 13-10-2018 CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 Gene3D G3DSA:3.30.980.20 93 186 1.0E-76 T 13-10-2018 CS348_09815 e2e7fb69cac0015fdab635a9e49bea32 271 TIGRFAM TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog 9 232 1.7E-101 T 13-10-2018 CS348_03465 c3f71f9a13ac06e04e3f1591507c6016 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_03465 c3f71f9a13ac06e04e3f1591507c6016 387 Gene3D G3DSA:1.20.1090.10 184 387 2.3E-49 T 13-10-2018 CS348_03465 c3f71f9a13ac06e04e3f1591507c6016 387 Gene3D G3DSA:3.40.50.1970 9 183 3.2E-47 T 13-10-2018 CS348_03465 c3f71f9a13ac06e04e3f1591507c6016 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 365 5.9E-91 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_03465 c3f71f9a13ac06e04e3f1591507c6016 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_03465 c3f71f9a13ac06e04e3f1591507c6016 387 SUPERFAMILY SSF56796 1 384 8.24E-107 T 13-10-2018 CS348_06765 44fc7ecd184d1a6194de529eb9450399 514 Pfam PF00486 Transcriptional regulatory protein, C terminal 24 100 2.0E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_06765 44fc7ecd184d1a6194de529eb9450399 514 Gene3D G3DSA:1.10.10.10 4 109 1.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06765 44fc7ecd184d1a6194de529eb9450399 514 SUPERFAMILY SSF46894 2 102 4.54E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_06765 44fc7ecd184d1a6194de529eb9450399 514 SMART SM00862 24 100 2.0E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_06765 44fc7ecd184d1a6194de529eb9450399 514 Gene3D G3DSA:1.25.40.10 353 514 1.3E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_06765 44fc7ecd184d1a6194de529eb9450399 514 Gene3D G3DSA:3.40.50.11830 193 352 7.2E-83 T 13-10-2018 CS348_24975 639a5e2e0736edf37fc2391f3c64613f 339 Gene3D G3DSA:3.40.30.10 187 328 1.7E-21 T 13-10-2018 CS348_24975 639a5e2e0736edf37fc2391f3c64613f 339 SUPERFAMILY SSF52833 178 312 1.47E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_24975 639a5e2e0736edf37fc2391f3c64613f 339 Pfam PF13098 Thioredoxin-like domain 192 310 6.4E-7 T 13-10-2018 IPR012336 Thioredoxin-like fold CS348_19375 3800fa3a526599ac2f091bc62fd7f1eb 197 Gene3D G3DSA:2.60.40.1090 26 196 1.2E-16 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_19375 3800fa3a526599ac2f091bc62fd7f1eb 197 SUPERFAMILY SSF49401 27 197 2.83E-14 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_02080 98f615537815942b22a86925403a8f47 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.942 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02080 98f615537815942b22a86925403a8f47 130 SUPERFAMILY SSF56047 5 129 4.97E-46 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02080 98f615537815942b22a86925403a8f47 130 Gene3D G3DSA:3.30.1490.10 73 130 4.0E-25 T 13-10-2018 CS348_02080 98f615537815942b22a86925403a8f47 130 Pfam PF00410 Ribosomal protein S8 5 129 4.9E-49 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02080 98f615537815942b22a86925403a8f47 130 Gene3D G3DSA:3.30.1370.30 2 72 4.8E-29 T 13-10-2018 CS348_02080 98f615537815942b22a86925403a8f47 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_14050 c3b8321edc82e4923b4eaf1a735a2448 216 SUPERFAMILY SSF50814 31 216 4.96E-78 T 13-10-2018 IPR012674 Calycin CS348_14050 c3b8321edc82e4923b4eaf1a735a2448 216 Pfam PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment 37 216 9.0E-83 T 13-10-2018 IPR015304 ZinT domain GO:0008270 CS348_14050 c3b8321edc82e4923b4eaf1a735a2448 216 Gene3D G3DSA:2.40.128.20 31 216 2.2E-83 T 13-10-2018 IPR012674 Calycin CS348_02110 94f7684647872b8ce2e068cf6725031c 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 1.5E-141 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 Gene3D G3DSA:1.10.3370.10 13 429 6.6E-165 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 7.7E-99 T 13-10-2018 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 SUPERFAMILY SSF103491 16 424 3.53E-134 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.964 T 13-10-2018 IPR026593 Protein translocase subunit SecY CS348_02110 94f7684647872b8ce2e068cf6725031c 443 Pfam PF00344 SecY translocase 76 417 6.5E-120 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 PIRSF PIRSF004557 11 441 4.3E-124 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02110 94f7684647872b8ce2e068cf6725031c 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_02930 c3b23b05d0ab80097fdf69b2d64f8074 457 TIGRFAM TIGR00827 EIIC-GAT: PTS system, galactitol-specific IIC component 9 412 2.9E-201 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 CS348_02930 c3b23b05d0ab80097fdf69b2d64f8074 457 PIRSF PIRSF006304 2 453 1.9E-167 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 CS348_02930 c3b23b05d0ab80097fdf69b2d64f8074 457 Pfam PF03611 PTS system sugar-specific permease component 8 385 1.9E-79 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CS348_03330 d3554b8214e23bfef8b47bd1c5f0192b 275 Gene3D G3DSA:3.60.21.10 6 272 7.5E-74 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_03330 d3554b8214e23bfef8b47bd1c5f0192b 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 206 1.6E-20 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_03330 d3554b8214e23bfef8b47bd1c5f0192b 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 41.905 T 13-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 CS348_03330 d3554b8214e23bfef8b47bd1c5f0192b 275 SUPERFAMILY SSF56300 16 268 7.6E-62 T 13-10-2018 CS348_03330 d3554b8214e23bfef8b47bd1c5f0192b 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 5.0E-27 T 13-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 CS348_14295 2915560766d0b893389f0fdffcb8a580 259 SUPERFAMILY SSF161098 3 254 3.74E-55 T 13-10-2018 IPR035906 MetI-like superfamily CS348_14295 2915560766d0b893389f0fdffcb8a580 259 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 253 7.0E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_14295 2915560766d0b893389f0fdffcb8a580 259 Gene3D G3DSA:1.10.3720.10 7 258 1.3E-48 T 13-10-2018 IPR035906 MetI-like superfamily CS348_18205 2b042fad9f9393aecb03ffb0de3b521e 269 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 3 257 5.5E-116 T 13-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 CS348_18205 2b042fad9f9393aecb03ffb0de3b521e 269 SUPERFAMILY SSF56784 4 259 1.88E-55 T 13-10-2018 IPR036412 HAD-like superfamily CS348_18205 2b042fad9f9393aecb03ffb0de3b521e 269 Gene3D G3DSA:1.10.150.240 22 100 8.8E-103 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_18205 2b042fad9f9393aecb03ffb0de3b521e 269 Gene3D G3DSA:3.40.50.1000 6 269 8.8E-103 T 13-10-2018 IPR023214 HAD superfamily CS348_18205 2b042fad9f9393aecb03ffb0de3b521e 269 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 34 203 1.0E-17 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_18205 2b042fad9f9393aecb03ffb0de3b521e 269 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 269 138.527 T 13-10-2018 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 CS348_03520 01789ff95b99032aa6dddf8fc600083d 164 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 1.8E-34 T 13-10-2018 IPR005134 Uncharacterised protein family UPF0114 CS348_03520 01789ff95b99032aa6dddf8fc600083d 164 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 164 91.828 T 13-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria CS348_03520 01789ff95b99032aa6dddf8fc600083d 164 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 163 1.4E-78 T 13-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 Pfam PF00072 Response regulator receiver domain 6 113 8.5E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 Gene3D G3DSA:1.10.10.10 124 236 1.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 SUPERFAMILY SSF52172 2 126 2.85E-36 T 13-10-2018 IPR011006 CheY-like superfamily CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 Gene3D G3DSA:3.40.50.2300 1 123 6.3E-33 T 13-10-2018 CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 SMART SM00448 4 114 6.3E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 SMART SM00862 156 232 3.7E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 SUPERFAMILY SSF46894 136 234 7.65E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_20375 c309dbeeec353a760a85ac406ec782f5 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 2.5E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 Gene3D G3DSA:3.40.50.1950 1 185 1.4E-51 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 3 397 2.3E-161 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 SUPERFAMILY SSF52507 3 178 2.62E-57 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 Pfam PF02441 Flavoprotein 6 178 4.1E-42 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 188 371 5.0E-71 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 Gene3D G3DSA:3.40.50.10300 186 406 1.5E-89 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CS348_00565 82e8bfbe0f3e145e224f5b3e669c7b9b 406 SUPERFAMILY SSF102645 184 401 3.01E-78 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CS348_10360 048c822d78c24793ab567d6a2d1ccd1a 232 Gene3D G3DSA:3.30.420.10 1 170 1.3E-50 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_10360 048c822d78c24793ab567d6a2d1ccd1a 232 Pfam PF00929 Exonuclease 4 147 7.1E-14 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_10360 048c822d78c24793ab567d6a2d1ccd1a 232 SUPERFAMILY SSF53098 4 194 1.41E-32 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_10360 048c822d78c24793ab567d6a2d1ccd1a 232 SMART SM00479 1 156 1.4E-36 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CS348_17855 b282d7f609f92aa3e68572f9334c6cd4 150 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 148 6.1E-22 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain CS348_17855 b282d7f609f92aa3e68572f9334c6cd4 150 Gene3D G3DSA:2.40.50.140 80 150 1.3E-6 T 13-10-2018 CS348_17855 b282d7f609f92aa3e68572f9334c6cd4 150 SUPERFAMILY SSF141322 107 149 3.79E-6 T 13-10-2018 CS348_13710 1dc0a508b052e675f1fd8c1517b88b1e 199 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 5 165 2.7E-33 T 13-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CS348_13710 1dc0a508b052e675f1fd8c1517b88b1e 199 PIRSF PIRSF030780 1 199 1.2E-128 T 13-10-2018 IPR016956 Inner membrane protein YdjM CS348_04510 a1de5f21dc22cb0678fb1cf0aa51b557 99 Pfam PF10885 Protein of unknown function (DUF2684) 1 89 9.3E-64 T 13-10-2018 IPR020263 Uncharacterised protein family YqgD CS348_04510 a1de5f21dc22cb0678fb1cf0aa51b557 99 ProDom PD060540 YQGD INNER MEMBRANE ECS3817 1 78 2.0E-40 T 13-10-2018 IPR020263 Uncharacterised protein family YqgD CS348_02480 7c041cacc0817d3a107876410b758b81 356 SUPERFAMILY SSF50494 46 254 8.71E-61 T 13-10-2018 IPR009003 Peptidase S1, PA clan CS348_02480 7c041cacc0817d3a107876410b758b81 356 Gene3D G3DSA:2.30.42.10 258 355 5.6E-22 T 13-10-2018 CS348_02480 7c041cacc0817d3a107876410b758b81 356 Gene3D G3DSA:2.40.10.10 27 141 1.3E-32 T 13-10-2018 CS348_02480 7c041cacc0817d3a107876410b758b81 356 SUPERFAMILY SSF50156 240 348 2.5E-20 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_02480 7c041cacc0817d3a107876410b758b81 356 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 353 2.5E-175 T 13-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 SMART SM00228 257 340 1.2E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_02480 7c041cacc0817d3a107876410b758b81 356 PRINTS PR00834 HtrA/DegQ protease family signature 89 101 8.0E-48 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 PRINTS PR00834 HtrA/DegQ protease family signature 151 175 8.0E-48 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 PRINTS PR00834 HtrA/DegQ protease family signature 298 310 8.0E-48 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 PRINTS PR00834 HtrA/DegQ protease family signature 186 203 8.0E-48 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 PRINTS PR00834 HtrA/DegQ protease family signature 110 130 8.0E-48 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 PRINTS PR00834 HtrA/DegQ protease family signature 208 225 8.0E-48 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CS348_02480 7c041cacc0817d3a107876410b758b81 356 Gene3D G3DSA:2.40.10.10 142 257 4.6E-40 T 13-10-2018 CS348_02480 7c041cacc0817d3a107876410b758b81 356 Pfam PF13180 PDZ domain 280 349 1.8E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_02480 7c041cacc0817d3a107876410b758b81 356 Pfam PF13365 Trypsin-like peptidase domain 80 215 1.4E-29 T 13-10-2018 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 SUPERFAMILY SSF51735 1 203 1.45E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 372 1.8E-70 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 SUPERFAMILY SSF48179 204 379 4.08E-46 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 Gene3D G3DSA:3.40.50.720 1 205 9.7E-85 T 13-10-2018 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 2.9E-26 T 13-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 9.8E-18 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 9.8E-18 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 9.8E-18 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 9.8E-18 T 13-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 41.63 T 13-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 Gene3D G3DSA:1.10.1040.10 207 382 3.4E-75 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_00775 fd9dc249adb311a06c214c4047e0b5e2 382 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 13-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 SUPERFAMILY SSF53167 9 484 2.97E-162 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 10 484 2.1E-242 T 13-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 12 166 2.5E-53 T 13-10-2018 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 Pfam PF01048 Phosphorylase superfamily 266 431 1.5E-19 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 Hamap MF_01932 AMP nucleosidase [amn]. 3 484 60.306 T 13-10-2018 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 Gene3D G3DSA:3.40.50.1580 173 484 2.2E-118 T 13-10-2018 CS348_09705 8d47ba020f142a7e8786eed58b6a1a97 484 Gene3D G3DSA:3.30.1730.10 1 172 1.3E-70 T 13-10-2018 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 CS348_05065 95aa7bd58c5af4d9bbcfd4cb24c7fb0b 268 Pfam PF00899 ThiF family 19 261 2.6E-37 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CS348_05065 95aa7bd58c5af4d9bbcfd4cb24c7fb0b 268 SUPERFAMILY SSF69572 10 261 3.4E-65 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CS348_05065 95aa7bd58c5af4d9bbcfd4cb24c7fb0b 268 Gene3D G3DSA:3.40.50.720 1 268 2.7E-118 T 13-10-2018 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 Gene3D G3DSA:3.30.70.20 312 410 1.3E-20 T 13-10-2018 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 SUPERFAMILY SSF51395 4 319 1.94E-69 T 13-10-2018 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 378 389 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 SUPERFAMILY SSF54862 310 400 4.19E-20 T 13-10-2018 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 Pfam PF14697 4Fe-4S dicluster domain 338 394 8.7E-17 T 13-10-2018 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 Gene3D G3DSA:3.20.20.70 6 309 5.3E-101 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 Pfam PF01180 Dihydroorotate dehydrogenase 6 304 5.7E-34 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CS348_08700 99e9e8439ae741dd23313e6adbd8eec3 411 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 6 319 1.1E-59 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CS348_19585 d8c3b98a6641b548f658e0795dc91d91 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 9.3E-162 T 13-10-2018 IPR031347 Protein AmpE CS348_24940 42ccf0aa85c0e5c4bd2d42c8b043ebfb 530 SUPERFAMILY SSF56425 324 467 1.4E-16 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_24940 42ccf0aa85c0e5c4bd2d42c8b043ebfb 530 SUPERFAMILY SSF51905 34 525 7.95E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_24940 42ccf0aa85c0e5c4bd2d42c8b043ebfb 530 Gene3D G3DSA:3.90.700.10 307 463 4.3E-88 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_24940 42ccf0aa85c0e5c4bd2d42c8b043ebfb 530 Gene3D G3DSA:3.50.50.60 48 523 4.3E-88 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_24940 42ccf0aa85c0e5c4bd2d42c8b043ebfb 530 Pfam PF00890 FAD binding domain 47 504 5.6E-45 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_09530 4e16b2a0fca795ad4c5f5a414f7bf35c 241 SUPERFAMILY SSF53790 1 239 6.54E-57 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CS348_09530 4e16b2a0fca795ad4c5f5a414f7bf35c 241 Gene3D G3DSA:3.40.1010.10 1 110 3.5E-30 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CS348_09530 4e16b2a0fca795ad4c5f5a414f7bf35c 241 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 208 2.9E-38 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CS348_09530 4e16b2a0fca795ad4c5f5a414f7bf35c 241 Gene3D G3DSA:3.30.950.10 111 241 5.5E-53 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CS348_09530 4e16b2a0fca795ad4c5f5a414f7bf35c 241 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 2 240 5.8E-107 T 13-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 CS348_12010 cf336f98607ed7aee3ef47d0265806ad 993 PIRSF PIRSF034585 1 993 0.0 T 13-10-2018 IPR009216 Virulence factor SrfB CS348_12010 cf336f98607ed7aee3ef47d0265806ad 993 Pfam PF07520 Virulence factor SrfB 1 990 0.0 T 13-10-2018 IPR009216 Virulence factor SrfB CS348_12010 cf336f98607ed7aee3ef47d0265806ad 993 SUPERFAMILY SSF53067 560 825 2.59E-6 T 13-10-2018 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 ProSitePatterns PS00510 Malate synthase signature. 266 281 - T 13-10-2018 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 Gene3D G3DSA:3.20.20.360 3 411 6.5E-197 T 13-10-2018 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 Gene3D G3DSA:1.20.1220.12 412 533 4.5E-50 T 13-10-2018 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 24 532 3.5E-250 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 SUPERFAMILY SSF51645 12 532 4.32E-187 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 Pfam PF01274 Malate synthase 13 532 1.5E-212 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CS348_22690 8848e3c7f7169e7cef13a60b948136bb 533 PIRSF PIRSF001363 2 533 1.7E-249 T 13-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CS348_14075 53f2e1fdfb7667c980bad9b31fb2a48c 265 Pfam PF00005 ABC transporter 26 175 5.5E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_14075 53f2e1fdfb7667c980bad9b31fb2a48c 265 SUPERFAMILY SSF52540 23 228 9.32E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14075 53f2e1fdfb7667c980bad9b31fb2a48c 265 SMART SM00382 35 222 1.1E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_14075 53f2e1fdfb7667c980bad9b31fb2a48c 265 Gene3D G3DSA:3.40.50.300 7 256 2.6E-51 T 13-10-2018 CS348_00035 7e6d9977cf786c150c24636497835d53 270 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 5.8E-69 T 13-10-2018 CS348_00035 7e6d9977cf786c150c24636497835d53 270 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 13-10-2018 CS348_00035 7e6d9977cf786c150c24636497835d53 270 Gene3D G3DSA:3.30.1240.10 87 193 7.9E-110 T 13-10-2018 CS348_00035 7e6d9977cf786c150c24636497835d53 270 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 1.1E-32 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_00035 7e6d9977cf786c150c24636497835d53 270 ProSitePatterns PS01229 Hypothetical cof family signature 2. 218 240 - T 13-10-2018 CS348_00035 7e6d9977cf786c150c24636497835d53 270 Gene3D G3DSA:3.40.50.1000 4 265 7.9E-110 T 13-10-2018 IPR023214 HAD superfamily CS348_00035 7e6d9977cf786c150c24636497835d53 270 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 3.8E-77 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_00035 7e6d9977cf786c150c24636497835d53 270 SUPERFAMILY SSF56784 1 268 8.28E-77 T 13-10-2018 IPR036412 HAD-like superfamily CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 SUPERFAMILY SSF50331 239 345 9.35E-13 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 5.0E-126 T 13-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 Pfam PF00005 ABC transporter 18 164 1.3E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 SMART SM00382 27 214 3.0E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 Gene3D G3DSA:3.40.50.300 2 255 2.3E-78 T 13-10-2018 CS348_07365 2602e778c56ccbb06523d3ac4663abc7 365 SUPERFAMILY SSF52540 3 245 3.59E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 PRINTS PR00783 Major intrinsic protein family signature 9 28 8.3E-52 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 PRINTS PR00783 Major intrinsic protein family signature 85 104 8.3E-52 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 PRINTS PR00783 Major intrinsic protein family signature 48 72 8.3E-52 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 PRINTS PR00783 Major intrinsic protein family signature 184 206 8.3E-52 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 PRINTS PR00783 Major intrinsic protein family signature 234 254 8.3E-52 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 PRINTS PR00783 Major intrinsic protein family signature 151 169 8.3E-52 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 ProSitePatterns PS00221 MIP family signature. 66 74 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 Gene3D G3DSA:1.20.1080.10 1 259 1.6E-109 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 SUPERFAMILY SSF81338 9 257 1.2E-78 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 Pfam PF00230 Major intrinsic protein 2 251 1.9E-75 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_23150 6613c0a3fd3857c13b802dd50ded917c 281 TIGRFAM TIGR00861 MIP: MIP family channel proteins 13 251 4.3E-75 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_12855 31008468c2c5a85b0d4e46641f178c19 298 Pfam PF13437 HlyD family secretion protein 166 244 9.1E-8 T 13-10-2018 CS348_12855 31008468c2c5a85b0d4e46641f178c19 298 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 53 240 9.3E-38 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_12855 31008468c2c5a85b0d4e46641f178c19 298 Gene3D G3DSA:2.40.30.170 179 298 4.5E-23 T 13-10-2018 CS348_12855 31008468c2c5a85b0d4e46641f178c19 298 Gene3D G3DSA:2.40.50.100 55 123 8.7E-13 T 13-10-2018 CS348_12855 31008468c2c5a85b0d4e46641f178c19 298 Pfam PF13533 Biotin-lipoyl like 55 104 1.1E-16 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CS348_12855 31008468c2c5a85b0d4e46641f178c19 298 SUPERFAMILY SSF111369 55 237 4.05E-25 T 13-10-2018 CS348_10310 8f47ad4224a96ff26858a227dfe7cdc9 289 SUPERFAMILY SSF53697 94 279 5.06E-43 T 13-10-2018 CS348_10310 8f47ad4224a96ff26858a227dfe7cdc9 289 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 1.4E-29 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CS348_10310 8f47ad4224a96ff26858a227dfe7cdc9 289 SUPERFAMILY SSF46689 1 80 9.14E-21 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_10310 8f47ad4224a96ff26858a227dfe7cdc9 289 Gene3D G3DSA:1.10.10.10 1 79 1.4E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_10310 8f47ad4224a96ff26858a227dfe7cdc9 289 Gene3D G3DSA:3.40.50.10490 95 277 1.9E-42 T 13-10-2018 CS348_10310 8f47ad4224a96ff26858a227dfe7cdc9 289 Pfam PF01380 SIS domain 124 252 1.3E-27 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_22280 bb9ddbdd41bc1d9af94f78c611c33c23 318 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 5 318 2.6E-146 T 13-10-2018 IPR017566 NrfD CS348_22280 bb9ddbdd41bc1d9af94f78c611c33c23 318 Gene3D G3DSA:1.20.1630.10 4 211 2.1E-14 T 13-10-2018 CS348_22280 bb9ddbdd41bc1d9af94f78c611c33c23 318 Pfam PF03916 Polysulphide reductase, NrfD 6 318 7.3E-104 T 13-10-2018 IPR005614 NrfD family CS348_09580 388259d5118308b0373623d307005948 247 Pfam PF02654 Cobalamin-5-phosphate synthase 9 244 1.2E-52 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CS348_09580 388259d5118308b0373623d307005948 247 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 1 246 5.9E-80 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CS348_09580 388259d5118308b0373623d307005948 247 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 247 48.9 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 Gene3D G3DSA:3.40.47.10 260 404 1.1E-51 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 246 3.6E-39 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 361 2.5E-29 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 SUPERFAMILY SSF53901 1 253 8.15E-63 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 Gene3D G3DSA:3.40.47.10 6 259 1.9E-65 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 SUPERFAMILY SSF53901 215 403 1.36E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_07745 e38a77fe50559106c51641a4f89fd2f4 404 SMART SM00825 Beta-ketoacyl synthase 4 404 3.9E-12 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CS348_11500 6a8c538f9d56a21e076347c6c6e12eba 119 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 7 119 3.5E-39 T 13-10-2018 IPR014320 Phage shock protein, PspC CS348_11500 6a8c538f9d56a21e076347c6c6e12eba 119 Pfam PF04024 PspC domain 8 65 1.7E-14 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal CS348_03045 e3a5a3512f38db0ef5559659e9703356 298 Gene3D G3DSA:3.40.190.290 114 290 8.4E-13 T 13-10-2018 CS348_03045 e3a5a3512f38db0ef5559659e9703356 298 SUPERFAMILY SSF46785 8 91 1.69E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_03045 e3a5a3512f38db0ef5559659e9703356 298 SUPERFAMILY SSF53850 93 290 5.35E-25 T 13-10-2018 CS348_03045 e3a5a3512f38db0ef5559659e9703356 298 Pfam PF03466 LysR substrate binding domain 97 289 4.6E-20 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_03045 e3a5a3512f38db0ef5559659e9703356 298 Gene3D G3DSA:1.10.10.10 6 96 4.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03045 e3a5a3512f38db0ef5559659e9703356 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 SMART SM00936 284 375 7.6E-29 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 284 375 1.2E-21 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 Gene3D G3DSA:2.60.410.10 284 375 1.1E-23 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 SUPERFAMILY SSF69189 284 377 1.96E-23 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 123 140 1.6E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 64 75 1.6E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 150 163 1.6E-17 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 30 264 3.6E-96 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CS348_09355 28a709d105cd233cfd93a705e965dbad 390 SUPERFAMILY SSF56601 2 284 1.48E-76 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_09355 28a709d105cd233cfd93a705e965dbad 390 Gene3D G3DSA:3.40.710.10 14 283 4.0E-94 T 13-10-2018 CS348_17585 901154907ea5269fd9a029e913458526 267 SUPERFAMILY SSF57938 156 206 8.63E-5 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CS348_17585 901154907ea5269fd9a029e913458526 267 Pfam PF03589 Antitermination protein 169 251 5.4E-21 T 13-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 CS348_17585 901154907ea5269fd9a029e913458526 267 Pfam PF03589 Antitermination protein 24 109 1.3E-24 T 13-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 CS348_17585 901154907ea5269fd9a029e913458526 267 Gene3D G3DSA:3.30.260.20 148 266 1.2E-36 T 13-10-2018 CS348_21770 55137712b3ee1ff716d38047d47297db 243 SUPERFAMILY SSF75217 69 242 3.73E-50 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_21770 55137712b3ee1ff716d38047d47297db 243 Gene3D G3DSA:3.30.1330.30 1 76 2.1E-33 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CS348_21770 55137712b3ee1ff716d38047d47297db 243 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.15 T 13-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB CS348_21770 55137712b3ee1ff716d38047d47297db 243 SUPERFAMILY SSF55315 2 76 5.18E-21 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CS348_21770 55137712b3ee1ff716d38047d47297db 243 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 77 1.6E-18 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CS348_21770 55137712b3ee1ff716d38047d47297db 243 Gene3D G3DSA:3.40.1280.10 77 243 2.6E-67 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_21770 55137712b3ee1ff716d38047d47297db 243 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 2.4E-93 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 CS348_21770 55137712b3ee1ff716d38047d47297db 243 Pfam PF00588 SpoU rRNA Methylase family 96 236 7.6E-41 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CS348_21770 55137712b3ee1ff716d38047d47297db 243 SMART SM00967 4 80 3.9E-21 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CS348_23280 f289069449476f60591926974c463945 300 Pfam PF01545 Cation efflux family 14 206 2.9E-47 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CS348_23280 f289069449476f60591926974c463945 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 1.3E-25 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain CS348_23280 f289069449476f60591926974c463945 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 64.399 T 13-10-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 CS348_23280 f289069449476f60591926974c463945 300 SUPERFAMILY SSF160240 209 288 4.58E-25 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CS348_23280 f289069449476f60591926974c463945 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 288 1.1E-80 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CS348_23280 f289069449476f60591926974c463945 300 Gene3D G3DSA:3.30.70.1350 207 290 2.3E-34 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CS348_23280 f289069449476f60591926974c463945 300 Gene3D G3DSA:1.20.1510.10 8 206 2.3E-70 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CS348_23280 f289069449476f60591926974c463945 300 SUPERFAMILY SSF161111 8 207 1.7E-52 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CS348_05855 e6efcea0d14afdcdab6267d6a812d0a2 119 Pfam PF06923 Glucitol operon activator protein (GutM) 5 110 8.2E-36 T 13-10-2018 IPR009693 Glucitol operon activator CS348_05855 e6efcea0d14afdcdab6267d6a812d0a2 119 PIRSF PIRSF011474 1 119 5.7E-45 T 13-10-2018 IPR009693 Glucitol operon activator CS348_09310 2f06bb73d483b8ff57adcf9262fe1729 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 4.0E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_09310 2f06bb73d483b8ff57adcf9262fe1729 304 Gene3D G3DSA:1.10.10.10 5 90 2.9E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_09310 2f06bb73d483b8ff57adcf9262fe1729 304 Gene3D G3DSA:3.40.190.290 94 273 1.8E-14 T 13-10-2018 CS348_09310 2f06bb73d483b8ff57adcf9262fe1729 304 Pfam PF03466 LysR substrate binding domain 89 290 2.0E-24 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_09310 2f06bb73d483b8ff57adcf9262fe1729 304 SUPERFAMILY SSF53850 90 291 1.34E-26 T 13-10-2018 CS348_09310 2f06bb73d483b8ff57adcf9262fe1729 304 SUPERFAMILY SSF46785 5 88 2.41E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16250 023feaa1a167012b5c420a3176521ce9 368 Pfam PF12698 ABC-2 family transporter protein 25 359 2.2E-47 T 13-10-2018 CS348_16250 023feaa1a167012b5c420a3176521ce9 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 2.3E-6 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_16250 023feaa1a167012b5c420a3176521ce9 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 2.3E-6 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_16250 023feaa1a167012b5c420a3176521ce9 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 2.3E-6 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CS348_15635 43b9d01cb217f2aaf40be3576bfdef53 108 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 5 72 8.1E-6 T 13-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative CS348_02140 e2bc1fde82f0d782c85bad88b790a3f9 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02140 e2bc1fde82f0d782c85bad88b790a3f9 127 Pfam PF01196 Ribosomal protein L17 20 116 1.3E-34 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02140 e2bc1fde82f0d782c85bad88b790a3f9 127 SUPERFAMILY SSF64263 1 118 3.4E-51 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02140 e2bc1fde82f0d782c85bad88b790a3f9 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 6.7E-51 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02140 e2bc1fde82f0d782c85bad88b790a3f9 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02140 e2bc1fde82f0d782c85bad88b790a3f9 127 Gene3D G3DSA:3.90.1030.10 1 117 3.2E-48 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_12175 d9ac20a8794f7974387ea139dad6b4b0 47 ProDom PD049510 RIBOSOMAL S22 30S RIBONUCLEOPROTEIN SUBUNIT D RIBOSOME- SEQUENCING DIRECT ASSOCIATED 1 44 6.0E-19 T 13-10-2018 IPR012607 Ribosomal protein S22 GO:0003735|GO:0005840|GO:0006412 CS348_12175 d9ac20a8794f7974387ea139dad6b4b0 47 Pfam PF08136 30S ribosomal protein subunit S22 family 1 44 1.7E-29 T 13-10-2018 IPR012607 Ribosomal protein S22 GO:0003735|GO:0005840|GO:0006412 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 PRINTS PR00050 Cold shock protein signature 4 19 6.0E-16 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 PRINTS PR00050 Cold shock protein signature 25 34 6.0E-16 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 PRINTS PR00050 Cold shock protein signature 40 58 6.0E-16 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 SUPERFAMILY SSF50249 1 66 3.18E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 9.4E-29 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 5.0E-43 T 13-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 13-10-2018 IPR019844 Cold-shock conserved site CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 SMART SM00357 3 67 4.0E-28 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 PIRSF PIRSF002599 1 73 5.6E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_15490 ffe5fae9dca30c58d5565170f0760d7a 73 Gene3D G3DSA:2.40.50.140 2 65 1.3E-26 T 13-10-2018 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 446 462 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 523 536 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 339 356 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 307 324 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 382 398 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 273 290 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 PRINTS PR00744 Glycosyl hydrolase family 37 signature 198 216 1.2E-47 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 Hamap MF_01060 Periplasmic trehalase [treA]. 2 541 84.942 T 13-10-2018 IPR023720 Trehalase, periplasmic GO:0004555|GO:0005993|GO:0042597|GO:0071474 KEGG: 00500+3.2.1.28 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 ProSitePatterns PS00927 Trehalase signature 1. 156 169 - T 13-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 Gene3D G3DSA:1.50.10.10 41 554 2.4E-190 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 SUPERFAMILY SSF48208 46 546 3.81E-173 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 ProSitePatterns PS00928 Trehalase signature 2. 453 462 - T 13-10-2018 IPR018232 Glycoside hydrolase, family 37, conserved site GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_10840 b8fb903e6739f78511b9d1664cb67ccd 570 Pfam PF01204 Trehalase 62 539 1.3E-169 T 13-10-2018 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 CS348_15410 ccca3c2676352bb3460e55ea40086749 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 33 191 1.9E-58 T 13-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like CS348_15410 ccca3c2676352bb3460e55ea40086749 203 SUPERFAMILY SSF89392 22 202 2.71E-57 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX CS348_15410 ccca3c2676352bb3460e55ea40086749 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 6 201 32.775 T 13-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 CS348_15410 ccca3c2676352bb3460e55ea40086749 203 Gene3D G3DSA:2.50.20.10 22 203 3.5E-55 T 13-10-2018 CS348_15410 ccca3c2676352bb3460e55ea40086749 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 203 2.2E-119 T 13-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 CS348_15640 7b5c8bb463abdcd770cbcad68dbf754b 118 Pfam PF10618 Phage tail tube protein 1 115 2.7E-39 T 13-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube CS348_24900 b14ec5ea8c9ba7c12b489e8f1411bcda 204 SMART SM00470 44 141 4.6E-5 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_24900 b14ec5ea8c9ba7c12b489e8f1411bcda 204 SUPERFAMILY SSF110849 43 174 1.59E-18 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_24900 b14ec5ea8c9ba7c12b489e8f1411bcda 204 Pfam PF02195 ParB-like nuclease domain 45 122 4.6E-9 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_06690 d244b28543770f3bc680af95f06e8662 282 Gene3D G3DSA:1.10.10.10 1 78 6.3E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06690 d244b28543770f3bc680af95f06e8662 282 Gene3D G3DSA:3.40.50.10490 98 282 4.0E-40 T 13-10-2018 CS348_06690 d244b28543770f3bc680af95f06e8662 282 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 7.5E-29 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CS348_06690 d244b28543770f3bc680af95f06e8662 282 Pfam PF01380 SIS domain 128 257 5.6E-29 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_06690 d244b28543770f3bc680af95f06e8662 282 SUPERFAMILY SSF53697 103 279 6.36E-35 T 13-10-2018 CS348_06690 d244b28543770f3bc680af95f06e8662 282 SUPERFAMILY SSF46689 1 77 1.4E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_09150 c265447fbb162d87d2b4d6d011ef7853 492 Pfam PF13440 Polysaccharide biosynthesis protein 31 325 3.4E-68 T 13-10-2018 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Gene3D G3DSA:3.30.70.270 4 164 2.0E-66 T 13-10-2018 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Hamap MF_01113 DNA polymerase IV [dinB]. 1 349 37.158 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Gene3D G3DSA:1.10.150.20 166 228 7.7E-19 T 13-10-2018 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Pfam PF11799 impB/mucB/samB family C-terminal domain 237 341 2.5E-9 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 SUPERFAMILY SSF100879 241 349 4.12E-26 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Pfam PF11798 IMS family HHH motif 166 197 1.1E-8 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 SUPERFAMILY SSF56672 1 234 4.54E-94 T 13-10-2018 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Gene3D G3DSA:3.30.1490.100 237 351 7.8E-30 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Pfam PF00817 impB/mucB/samB family 7 154 1.1E-47 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CS348_18770 a8bb563822102638c67801d6439ee9e3 351 Gene3D G3DSA:2.30.40.20 21 73 2.0E-66 T 13-10-2018 CS348_18960 69b554e9af824cc1938be7e24051af5b 331 Pfam PF06996 Type VI secretion, TssG 12 309 5.2E-90 T 13-10-2018 IPR010732 Type VI secretion, TssG-like CS348_18960 69b554e9af824cc1938be7e24051af5b 331 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 11 310 8.6E-102 T 13-10-2018 IPR010732 Type VI secretion, TssG-like CS348_00310 a2e2b2804f2fbc7a96a76e3b6f9e6465 107 Pfam PF01381 Helix-turn-helix 52 95 1.6E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_00310 a2e2b2804f2fbc7a96a76e3b6f9e6465 107 SUPERFAMILY SSF47413 52 106 3.22E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_00310 a2e2b2804f2fbc7a96a76e3b6f9e6465 107 Gene3D G3DSA:1.10.260.40 13 105 1.8E-17 T 13-10-2018 CS348_00310 a2e2b2804f2fbc7a96a76e3b6f9e6465 107 SMART SM00530 51 105 1.3E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_15685 aba73131df042c8b6587b96cbe6ad7ae 364 TIGRFAM TIGR01537 portal_HK97: phage portal protein, HK97 family 1 339 3.5E-97 T 13-10-2018 IPR006427 Phage portal protein, HK97 CS348_15685 aba73131df042c8b6587b96cbe6ad7ae 364 Pfam PF04860 Phage portal protein 5 333 4.5E-93 T 13-10-2018 IPR006944 Bacteriophage/Gene transfer agent portal protein CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 SUPERFAMILY SSF55973 3 109 1.49E-47 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 5.0E-43 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 60.161 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Gene3D G3DSA:3.30.300.10 5 233 9.2E-181 T 13-10-2018 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 4.0E-201 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 SUPERFAMILY SSF55973 112 232 3.77E-52 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 8.3E-70 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 SUPERFAMILY SSF55973 233 382 1.37E-71 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Gene3D G3DSA:3.30.300.10 103 372 9.2E-181 T 13-10-2018 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 PIRSF PIRSF000497 1 382 5.3E-176 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 9.6E-46 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CS348_04505 552d11b4fcfc93d13eabaf628d105ec2 384 Gene3D G3DSA:3.30.300.10 11 270 9.2E-181 T 13-10-2018 CS348_11200 66315a5521c35f944dc4bbe93359f9a3 292 Pfam PF05067 Manganese containing catalase 1 289 5.7E-91 T 13-10-2018 IPR007760 Manganese catalase CS348_11200 66315a5521c35f944dc4bbe93359f9a3 292 SUPERFAMILY SSF47240 1 285 1.66E-86 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_11200 66315a5521c35f944dc4bbe93359f9a3 292 Gene3D G3DSA:1.20.1260.130 2 245 4.8E-72 T 13-10-2018 CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 2.1E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 Gene3D G3DSA:1.10.10.10 1 89 1.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 Hamap MF_01607 HTH-type transcriptional regulator YidZ [yidZ]. 1 319 85.558 T 13-10-2018 IPR023746 Transcription regulator HTH, YidZ GO:0003700|GO:0006355 CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 Gene3D G3DSA:3.40.190.10 99 310 1.3E-32 T 13-10-2018 CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 SUPERFAMILY SSF46785 6 87 7.53E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 Gene3D G3DSA:3.40.190.10 180 281 1.3E-32 T 13-10-2018 CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 SUPERFAMILY SSF53850 98 311 5.43E-25 T 13-10-2018 CS348_24580 93d7a8b1322f58de0ab92114d5a29458 319 Pfam PF03466 LysR substrate binding domain 114 313 4.7E-14 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 SUPERFAMILY SSF50677 226 415 4.5E-57 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Gene3D G3DSA:3.10.20.590 799 860 1.2E-24 T 13-10-2018 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 651 9.7E-7 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 171 8.3E-26 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 572 3.1E-7 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.378 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Pfam PF08264 Anticodon-binding domain of tRNA 701 821 8.1E-18 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Gene3D G3DSA:1.10.730.10 8 791 0.0 T 13-10-2018 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 4.1E-52 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 2.5E-78 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 SUPERFAMILY SSF47323 662 859 6.73E-38 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 13-10-2018 CS348_16985 2acfd40a507680b83c3be08afd89dd14 860 SUPERFAMILY SSF52374 5 668 1.35E-140 T 13-10-2018 CS348_05215 1736ff8655080332192ddb60ca3d5510 380 PIRSF PIRSF006078 1 378 2.6E-140 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_05215 1736ff8655080332192ddb60ca3d5510 380 SUPERFAMILY SSF110738 1 373 1.44E-142 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 CS348_05215 1736ff8655080332192ddb60ca3d5510 380 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 3.1E-164 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_05215 1736ff8655080332192ddb60ca3d5510 380 Gene3D G3DSA:3.40.50.10350 2 361 2.6E-147 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold CS348_05215 1736ff8655080332192ddb60ca3d5510 380 Pfam PF02595 Glycerate kinase family 3 373 1.1E-150 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_05215 1736ff8655080332192ddb60ca3d5510 380 Gene3D G3DSA:3.90.1510.10 42 276 2.6E-147 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 CS348_22165 e654a2071829437d9dbd4d7ea0d010ee 446 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 443 6.3E-202 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_22165 e654a2071829437d9dbd4d7ea0d010ee 446 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 6 376 1.3E-148 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_22165 e654a2071829437d9dbd4d7ea0d010ee 446 PIRSF PIRSF004539 1 444 1.4E-196 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_22780 f32f457d66fb2fa48d8d38b34d5b22c2 162 Hamap MF_01181 Regulator of sigma D [rsd]. 1 151 41.31 T 13-10-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd CS348_22780 f32f457d66fb2fa48d8d38b34d5b22c2 162 Gene3D G3DSA:1.20.120.1370 1 151 5.9E-60 T 13-10-2018 IPR038309 Rsd/AlgQ superfamily CS348_22780 f32f457d66fb2fa48d8d38b34d5b22c2 162 PIRSF PIRSF016548 1 159 1.2E-58 T 13-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 CS348_22780 f32f457d66fb2fa48d8d38b34d5b22c2 162 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 147 1.5E-52 T 13-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 CS348_07260 3998bd1fb29504c575e812e07a1e5556 99 Gene3D G3DSA:2.40.50.220 5 99 2.3E-34 T 13-10-2018 IPR036677 EutN/Ccml superfamily CS348_07260 3998bd1fb29504c575e812e07a1e5556 99 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 15 87 2.0E-36 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml CS348_07260 3998bd1fb29504c575e812e07a1e5556 99 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 5 87 5.4E-29 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml CS348_07260 3998bd1fb29504c575e812e07a1e5556 99 SUPERFAMILY SSF159133 5 98 3.79E-30 T 13-10-2018 IPR036677 EutN/Ccml superfamily CS348_15235 a9a06c426c304b9807b4ae062ddf4eb3 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 3.1E-30 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_15235 a9a06c426c304b9807b4ae062ddf4eb3 215 SUPERFAMILY SSF56281 2 209 1.76E-60 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_15235 a9a06c426c304b9807b4ae062ddf4eb3 215 Gene3D G3DSA:3.60.15.10 1 210 3.1E-94 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_15235 a9a06c426c304b9807b4ae062ddf4eb3 215 SMART SM00849 12 192 7.3E-43 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_11030 6791d896bf2f9f0c1d8d4d9adafbf3f8 184 SUPERFAMILY SSF52540 4 170 1.8E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11030 6791d896bf2f9f0c1d8d4d9adafbf3f8 184 Gene3D G3DSA:3.40.50.300 3 173 2.2E-12 T 13-10-2018 CS348_11030 6791d896bf2f9f0c1d8d4d9adafbf3f8 184 Pfam PF13521 AAA domain 4 168 4.7E-40 T 13-10-2018 IPR038727 NadR/Ttd14, AAA domain CS348_05445 6ecf6b740cfda9605c98a3b3576d804b 420 Gene3D G3DSA:3.40.50.10840 1 235 4.0E-96 T 13-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily CS348_05445 6ecf6b740cfda9605c98a3b3576d804b 420 SUPERFAMILY SSF142764 4 418 1.7E-129 T 13-10-2018 CS348_05445 6ecf6b740cfda9605c98a3b3576d804b 420 Pfam PF07005 Putative sugar-binding N-terminal domain 4 229 2.5E-68 T 13-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain CS348_05445 6ecf6b740cfda9605c98a3b3576d804b 420 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 253 411 8.6E-41 T 13-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain CS348_05445 6ecf6b740cfda9605c98a3b3576d804b 420 Gene3D G3DSA:3.40.980.20 243 420 2.7E-73 T 13-10-2018 CS348_09675 e941b86d531556aae389a1351cc8376c 485 TIGRFAM TIGR00797 matE: MATE efflux family protein 48 452 1.4E-69 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_09675 e941b86d531556aae389a1351cc8376c 485 Pfam PF01554 MatE 48 208 3.0E-35 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_09675 e941b86d531556aae389a1351cc8376c 485 Pfam PF01554 MatE 278 439 1.1E-20 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_09675 e941b86d531556aae389a1351cc8376c 485 PIRSF PIRSF006603 30 484 7.6E-72 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CS348_03655 c49ee7e7024c0d2e1c2837035fae02a1 307 Gene3D G3DSA:3.20.20.370 3 297 6.8E-84 T 13-10-2018 CS348_03655 c49ee7e7024c0d2e1c2837035fae02a1 307 SUPERFAMILY SSF88713 4 280 1.64E-62 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CS348_03655 c49ee7e7024c0d2e1c2837035fae02a1 307 Pfam PF01522 Polysaccharide deacetylase 46 151 3.8E-18 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 139 3.4E-43 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 4.2E-29 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 4.2E-29 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 41 57 4.2E-29 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 75 90 4.2E-29 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 97 110 4.2E-29 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 SMART SM00226 3 141 2.6E-60 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 SUPERFAMILY SSF52788 1 142 7.06E-43 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CS348_09075 61c6b944982a3e4f698b675c0efdff78 149 Gene3D G3DSA:3.40.50.2300 1 147 9.8E-55 T 13-10-2018 CS348_17315 8858dd791d6f49a3100a8cc874c74773 404 SUPERFAMILY SSF53474 160 398 1.85E-46 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_17315 8858dd791d6f49a3100a8cc874c74773 404 Pfam PF00756 Putative esterase 177 394 2.1E-38 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CS348_17315 8858dd791d6f49a3100a8cc874c74773 404 Gene3D G3DSA:2.60.40.10 1 149 4.9E-66 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_17315 8858dd791d6f49a3100a8cc874c74773 404 Pfam PF11806 Domain of unknown function (DUF3327) 30 160 9.8E-44 T 13-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 CS348_17315 8858dd791d6f49a3100a8cc874c74773 404 SUPERFAMILY SSF81296 6 155 1.54E-49 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_17315 8858dd791d6f49a3100a8cc874c74773 404 Gene3D G3DSA:3.40.50.1820 150 404 1.4E-70 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_08940 ffa3906f93f76aee2ebeed67e8b3026f 423 Pfam PF03825 Nucleoside H+ symporter 1 404 1.5E-180 T 13-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 CS348_08940 ffa3906f93f76aee2ebeed67e8b3026f 423 Gene3D G3DSA:1.20.1250.20 2 193 2.2E-16 T 13-10-2018 CS348_08940 ffa3906f93f76aee2ebeed67e8b3026f 423 Gene3D G3DSA:1.20.1250.20 200 411 5.1E-29 T 13-10-2018 CS348_08940 ffa3906f93f76aee2ebeed67e8b3026f 423 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 416 1.2E-191 T 13-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 CS348_08940 ffa3906f93f76aee2ebeed67e8b3026f 423 SUPERFAMILY SSF103473 4 404 3.01E-40 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00640 f0cc93cd0c5fcf72adbbbc05b82d18d9 269 TIGRFAM TIGR04437 WaaZ_KDO_III: 3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ 6 256 1.8E-138 T 13-10-2018 IPR031026 3-deoxy-D-manno-oct-2-ulosonate III transferase WaaZ CS348_00640 f0cc93cd0c5fcf72adbbbc05b82d18d9 269 ProDom PD024016 LIPOPOLYSACCHARIDE BIOSYNTHESIS CORE RFAZ WAAZ 1 268 2.0E-154 T 13-10-2018 CS348_08470 40f82267a02cdf42b64f38ea9135a2d6 586 PIRSF PIRSF004950 6 586 1.8E-229 T 13-10-2018 IPR012159 Inner membrane protein YejM CS348_08470 40f82267a02cdf42b64f38ea9135a2d6 586 Gene3D G3DSA:3.40.720.10 254 504 6.6E-33 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_08470 40f82267a02cdf42b64f38ea9135a2d6 586 Pfam PF11893 Domain of unknown function (DUF3413) 6 252 4.8E-105 T 13-10-2018 IPR024588 Inner membrane protein YejM, N-terminal CS348_08470 40f82267a02cdf42b64f38ea9135a2d6 586 Pfam PF00884 Sulfatase 260 500 7.7E-30 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_08470 40f82267a02cdf42b64f38ea9135a2d6 586 SUPERFAMILY SSF53649 257 581 3.14E-54 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_01495 6841862ec76b00b61928ebf324808468 253 Pfam PF07090 Putative glutamine amidotransferase 9 251 4.4E-113 T 13-10-2018 IPR010768 Putative glutamine amidotransferase CS348_01495 6841862ec76b00b61928ebf324808468 253 Gene3D G3DSA:3.40.50.880 1 253 2.7E-115 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_01495 6841862ec76b00b61928ebf324808468 253 PIRSF PIRSF034405 5 253 1.4E-140 T 13-10-2018 IPR017027 Uncharacterised conserved protein UCP034405 CS348_01495 6841862ec76b00b61928ebf324808468 253 SUPERFAMILY SSF52317 9 252 8.39E-75 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 SUPERFAMILY SSF52335 7 197 6.41E-72 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 SMART SM00851 19 132 6.9E-63 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 8.1E-271 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 Pfam PF02142 MGS-like domain 19 132 3.2E-30 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 Gene3D G3DSA:3.40.140.20 218 373 6.0E-58 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 PIRSF PIRSF000414 1 529 1.1E-227 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 SMART SM00798 137 461 2.2E-217 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.545 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 Gene3D G3DSA:3.40.140.20 392 529 1.2E-58 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 SUPERFAMILY SSF53927 221 529 1.1E-130 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 3.6E-120 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_22725 456f1bcd4b878de3564b42a561c5936c 529 Gene3D G3DSA:3.40.50.1380 1 200 4.7E-87 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CS348_21910 ed4e83ae1f7101581ed709f1b980e674 131 SUPERFAMILY SSF81343 2 131 3.79E-58 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21910 ed4e83ae1f7101581ed709f1b980e674 131 Pfam PF02300 Fumarate reductase subunit C 3 128 4.1E-56 T 13-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 CS348_21910 ed4e83ae1f7101581ed709f1b980e674 131 PIRSF PIRSF000180 2 130 6.1E-61 T 13-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 CS348_21910 ed4e83ae1f7101581ed709f1b980e674 131 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 8 114 5.0E-48 T 13-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 CS348_21910 ed4e83ae1f7101581ed709f1b980e674 131 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 29.893 T 13-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 CS348_21910 ed4e83ae1f7101581ed709f1b980e674 131 Gene3D G3DSA:1.20.1300.10 2 131 2.0E-53 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_11170 26572389649de0280baf5c68d6430727 133 Gene3D G3DSA:3.10.129.10 2 132 1.9E-42 T 13-10-2018 CS348_11170 26572389649de0280baf5c68d6430727 133 SUPERFAMILY SSF54637 8 130 9.16E-39 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_11170 26572389649de0280baf5c68d6430727 133 Pfam PF03061 Thioesterase superfamily 26 97 1.7E-18 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CS348_21250 3658c91567137b7f2558d21d92014fbd 138 SUPERFAMILY SSF89946 2 122 1.31E-42 T 13-10-2018 IPR036701 RraB-like superfamily CS348_21250 3658c91567137b7f2558d21d92014fbd 138 Pfam PF06877 Regulator of ribonuclease activity B 12 113 4.0E-35 T 13-10-2018 IPR009671 Regulator of ribonuclease activity B domain CS348_21250 3658c91567137b7f2558d21d92014fbd 138 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 31.902 T 13-10-2018 IPR016716 Regulator of ribonuclease activity B CS348_21250 3658c91567137b7f2558d21d92014fbd 138 PIRSF PIRSF018193 1 138 1.3E-66 T 13-10-2018 IPR016716 Regulator of ribonuclease activity B CS348_21250 3658c91567137b7f2558d21d92014fbd 138 Gene3D G3DSA:3.30.70.970 1 125 4.9E-53 T 13-10-2018 IPR036701 RraB-like superfamily CS348_20840 743a1768535f84937e857601ee5ddc57 225 Gene3D G3DSA:1.10.150.240 16 95 1.4E-61 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CS348_20840 743a1768535f84937e857601ee5ddc57 225 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 4 221 6.3E-73 T 13-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 CS348_20840 743a1768535f84937e857601ee5ddc57 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 81 194 6.9E-22 T 13-10-2018 CS348_20840 743a1768535f84937e857601ee5ddc57 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 92 195 1.0E-10 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_20840 743a1768535f84937e857601ee5ddc57 225 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 101 189 1.7E-16 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_20840 743a1768535f84937e857601ee5ddc57 225 SUPERFAMILY SSF56784 3 222 5.8E-47 T 13-10-2018 IPR036412 HAD-like superfamily CS348_20840 743a1768535f84937e857601ee5ddc57 225 Gene3D G3DSA:3.40.50.1000 5 218 1.4E-61 T 13-10-2018 IPR023214 HAD superfamily CS348_20840 743a1768535f84937e857601ee5ddc57 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 8.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_20840 743a1768535f84937e857601ee5ddc57 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 8.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_20840 743a1768535f84937e857601ee5ddc57 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 8.0E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_05820 230ceaa0e618e996c1ba01b8085fe01c 181 Gene3D G3DSA:3.30.70.20 5 167 2.4E-30 T 13-10-2018 CS348_05820 230ceaa0e618e996c1ba01b8085fe01c 181 SUPERFAMILY SSF54862 1 170 1.44E-42 T 13-10-2018 CS348_05820 230ceaa0e618e996c1ba01b8085fe01c 181 Gene3D G3DSA:3.30.70.20 64 130 2.4E-30 T 13-10-2018 CS348_05820 230ceaa0e618e996c1ba01b8085fe01c 181 Pfam PF13247 4Fe-4S dicluster domain 55 104 4.7E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_05820 230ceaa0e618e996c1ba01b8085fe01c 181 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_05820 230ceaa0e618e996c1ba01b8085fe01c 181 Pfam PF12800 4Fe-4S binding domain 10 22 0.48 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_02510 7d13b9cb82f2d49687b202ea3198f026 250 Pfam PF06877 Regulator of ribonuclease activity B 145 244 1.5E-19 T 13-10-2018 IPR009671 Regulator of ribonuclease activity B domain CS348_02510 7d13b9cb82f2d49687b202ea3198f026 250 Pfam PF05117 Family of unknown function (DUF695) 4 136 1.6E-33 T 13-10-2018 IPR016097 Domain of unknown function DUF695 CS348_02510 7d13b9cb82f2d49687b202ea3198f026 250 SUPERFAMILY SSF89946 129 249 1.7E-19 T 13-10-2018 IPR036701 RraB-like superfamily CS348_24245 518ffb60ff4c272fff5e6662957e97a3 247 Gene3D G3DSA:3.40.50.1580 1 241 2.4E-73 T 13-10-2018 CS348_24245 518ffb60ff4c272fff5e6662957e97a3 247 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 61 76 - T 13-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_24245 518ffb60ff4c272fff5e6662957e97a3 247 SUPERFAMILY SSF53167 2 203 5.37E-65 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CS348_24245 518ffb60ff4c272fff5e6662957e97a3 247 Pfam PF01048 Phosphorylase superfamily 15 199 2.4E-37 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CS348_25405 c071f15ee6ce437586efd73a8900898c 176 Gene3D G3DSA:1.10.530.10 22 154 1.4E-16 T 13-10-2018 CS348_25405 c071f15ee6ce437586efd73a8900898c 176 Pfam PF01464 Transglycosylase SLT domain 24 141 9.2E-20 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_25405 c071f15ee6ce437586efd73a8900898c 176 SUPERFAMILY SSF53955 21 146 2.19E-27 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_19765 92cef8d85d0f7394637207adf9b6a5f1 28 Pfam PF08054 Leucine operon leader peptide 1 28 8.7E-21 T 13-10-2018 IPR012570 Leucine operon leader peptide GO:0009098 CS348_19610 71fc86ffc1f51fa2f460ea5170453d7f 461 Gene3D G3DSA:3.30.450.90 50 186 5.6E-39 T 13-10-2018 CS348_19610 71fc86ffc1f51fa2f460ea5170453d7f 461 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 9 62 3.5E-5 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal CS348_19610 71fc86ffc1f51fa2f460ea5170453d7f 461 Pfam PF00437 Type II/IV secretion system protein 90 353 3.1E-81 T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_19610 71fc86ffc1f51fa2f460ea5170453d7f 461 Gene3D G3DSA:3.40.50.300 188 459 3.0E-102 T 13-10-2018 CS348_19610 71fc86ffc1f51fa2f460ea5170453d7f 461 SUPERFAMILY SSF52540 79 454 1.58E-87 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19610 71fc86ffc1f51fa2f460ea5170453d7f 461 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 281 295 - T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_15455 7685e403ced062aa096db5195bf558e7 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 9.2E-28 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 CS348_15455 7685e403ced062aa096db5195bf558e7 72 SMART SM00316 4 72 2.8E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_15455 7685e403ced062aa096db5195bf558e7 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.442 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CS348_15455 7685e403ced062aa096db5195bf558e7 72 Gene3D G3DSA:2.40.50.140 1 72 2.3E-36 T 13-10-2018 CS348_15455 7685e403ced062aa096db5195bf558e7 72 SUPERFAMILY SSF50249 1 70 5.36E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_15455 7685e403ced062aa096db5195bf558e7 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 5.1E-39 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CS348_22030 123a1016b4d7c7f61c95e540ca6099be 70 SUPERFAMILY SSF46785 24 69 2.37E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_22030 123a1016b4d7c7f61c95e540ca6099be 70 Pfam PF04703 FaeA-like protein 7 69 2.3E-20 T 13-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 CS348_22030 123a1016b4d7c7f61c95e540ca6099be 70 ProDom PD007170 TRANSCRIPTION REGULATORY REGULATION FIMBRIA FIMBRIAL PLASMID ACTIVATOR PAPI OPERON PEFI 7 69 3.0E-30 T 13-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 CS348_22030 123a1016b4d7c7f61c95e540ca6099be 70 Gene3D G3DSA:1.10.10.10 1 70 2.9E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03685 df5f6f657a57a6e7c02ebf3499fc8ad3 499 PIRSF PIRSF006060 3 491 9.2E-71 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_03685 df5f6f657a57a6e7c02ebf3499fc8ad3 499 Pfam PF13520 Amino acid permease 15 432 5.2E-36 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_03685 df5f6f657a57a6e7c02ebf3499fc8ad3 499 Gene3D G3DSA:1.20.1740.10 11 464 1.4E-47 T 13-10-2018 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Pfam PF01103 Surface antigen 281 574 1.4E-31 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Pfam PF07244 Surface antigen variable number repeat 189 248 8.3E-9 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Gene3D G3DSA:3.10.20.310 189 265 4.4E-25 T 13-10-2018 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Gene3D G3DSA:3.10.20.310 21 101 7.5E-34 T 13-10-2018 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Pfam PF17243 POTRA domain TamA domain 1 26 100 1.1E-20 T 13-10-2018 IPR035243 TamA, POTRA domain 1 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Gene3D G3DSA:2.40.160.50 266 577 5.7E-129 T 13-10-2018 CS348_21560 c086c0969ad92e10e2bc55bdebb6cf42 577 Gene3D G3DSA:3.10.20.310 102 188 4.6E-30 T 13-10-2018 CS348_18500 aa0d5e240631d2bc3132f4f7760decd8 385 Gene3D G3DSA:3.40.710.10 28 376 7.4E-111 T 13-10-2018 CS348_18500 aa0d5e240631d2bc3132f4f7760decd8 385 Pfam PF00144 Beta-lactamase 45 357 8.6E-63 T 13-10-2018 IPR001466 Beta-lactamase-related CS348_18500 aa0d5e240631d2bc3132f4f7760decd8 385 SUPERFAMILY SSF56601 33 363 1.83E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_21070 6d4a9405a3b099deba2d960a02875f0b 176 Gene3D G3DSA:2.30.110.20 30 170 4.2E-27 T 13-10-2018 IPR036624 Hcp1-like superfamily CS348_21070 6d4a9405a3b099deba2d960a02875f0b 176 Pfam PF05638 Type VI secretion system effector, Hcp 33 155 7.9E-29 T 13-10-2018 IPR008514 Type VI secretion system effector, Hcp CS348_21070 6d4a9405a3b099deba2d960a02875f0b 176 SUPERFAMILY SSF141452 30 159 3.27E-32 T 13-10-2018 IPR036624 Hcp1-like superfamily CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 7 460 3.0E-216 T 13-10-2018 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 KEGG: 00500+2.7.1.201 CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 Gene3D G3DSA:3.30.1360.60 3 78 1.1E-20 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 SUPERFAMILY SSF55604 10 82 1.31E-18 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 Pfam PF00367 phosphotransferase system, EIIB 12 39 1.1E-11 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 Pfam PF02378 Phosphotransferase system, EIIC 112 404 1.1E-32 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_21335 0dd86df5b68b45f9226302c22a4b43cf 472 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 1.6E-16 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CS348_24145 b0120df15c76fd21fb914cd2029b4699 461 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_24145 b0120df15c76fd21fb914cd2029b4699 461 Pfam PF00324 Amino acid permease 16 433 7.8E-104 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_24145 b0120df15c76fd21fb914cd2029b4699 461 Gene3D G3DSA:1.20.1740.10 8 458 1.9E-54 T 13-10-2018 CS348_24145 b0120df15c76fd21fb914cd2029b4699 461 PIRSF PIRSF006060 1 459 4.2E-65 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_13885 28a507f3e1491ada1e339a0ea44e7fd5 147 SUPERFAMILY SSF51316 15 141 4.53E-59 T 13-10-2018 IPR011057 Mss4-like superfamily CS348_13885 28a507f3e1491ada1e339a0ea44e7fd5 147 Gene3D G3DSA:2.170.150.20 6 146 8.3E-62 T 13-10-2018 CS348_13885 28a507f3e1491ada1e339a0ea44e7fd5 147 Pfam PF01641 SelR domain 19 137 3.3E-54 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CS348_13885 28a507f3e1491ada1e339a0ea44e7fd5 147 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 13 139 38.504 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CS348_13885 28a507f3e1491ada1e339a0ea44e7fd5 147 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 15 144 2.3E-64 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CS348_22655 932010bab929709636d6cfddc6d0f824 229 Gene3D G3DSA:3.40.50.880 1 229 2.0E-68 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_22655 932010bab929709636d6cfddc6d0f824 229 Pfam PF03575 Peptidase family S51 3 204 1.1E-61 T 13-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 CS348_22655 932010bab929709636d6cfddc6d0f824 229 SUPERFAMILY SSF52317 1 221 2.06E-43 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_22655 932010bab929709636d6cfddc6d0f824 229 Hamap MF_00510 Peptidase E [pepE]. 1 215 50.843 T 13-10-2018 IPR023172 Peptidase S51, dipeptidase E GO:0016805 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Gene3D G3DSA:1.10.287.470 115 187 3.7E-7 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Gene3D G3DSA:2.40.30.170 249 298 1.2E-13 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Gene3D G3DSA:2.40.50.100 214 248 1.2E-13 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 SUPERFAMILY SSF111369 172 275 2.35E-5 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Gene3D G3DSA:1.10.287.470 81 112 2.6E-10 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Gene3D G3DSA:2.40.50.100 47 80 2.6E-10 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 SUPERFAMILY SSF111369 40 116 9.15E-8 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Pfam PF13437 HlyD family secretion protein 214 318 4.5E-13 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Pfam PF13533 Biotin-lipoyl like 48 94 1.2E-9 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CS348_01300 8e239947cd135ec968677de9af0a2023 355 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 327 342 2.2E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_01300 8e239947cd135ec968677de9af0a2023 355 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 58 78 2.2E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CS348_01300 8e239947cd135ec968677de9af0a2023 355 SUPERFAMILY SSF111369 117 176 8.5E-5 T 13-10-2018 CS348_01300 8e239947cd135ec968677de9af0a2023 355 Gene3D G3DSA:1.10.287.470 190 213 1.2E-13 T 13-10-2018 CS348_18835 fed88dc225241b69ced8e2c3f18ac25f 349 Gene3D G3DSA:2.60.40.2040 193 349 5.0E-41 T 13-10-2018 CS348_18835 fed88dc225241b69ced8e2c3f18ac25f 349 Pfam PF07434 CblD like pilus biogenesis initiator 69 342 7.4E-44 T 13-10-2018 IPR010888 CblD-like pilus biogenesis initiator CS348_18835 fed88dc225241b69ced8e2c3f18ac25f 349 Gene3D G3DSA:2.60.40.2520 30 189 3.4E-20 T 13-10-2018 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 SMART SM00926 43 104 2.0E-21 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 SUPERFAMILY SSF53706 35 195 2.88E-56 T 13-10-2018 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 Gene3D G3DSA:3.40.50.740 107 195 3.0E-35 T 13-10-2018 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 103 9.3E-19 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 Gene3D G3DSA:2.20.25.90 44 105 1.6E-15 T 13-10-2018 CS348_23600 fb86d9d23b66c2b190e82c643a629f3c 195 Pfam PF00384 Molybdopterin oxidoreductase 107 162 3.3E-6 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 Pfam PF01256 Carbohydrate kinase 258 495 1.4E-76 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 ProSitePatterns PS01049 YjeF C-terminal domain signature 1. 323 333 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 SUPERFAMILY SSF53613 235 498 1.81E-75 T 13-10-2018 IPR029056 Ribokinase-like CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 PIRSF PIRSF017184 15 504 1.7E-164 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 20 219 5.8E-62 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 SUPERFAMILY SSF64153 17 256 2.49E-62 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 499 23.651 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 Pfam PF03853 YjeF-related protein N-terminus 40 199 2.0E-42 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 Gene3D G3DSA:3.40.50.10260 15 225 1.5E-55 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 Gene3D G3DSA:3.40.1190.20 230 499 6.3E-86 T 13-10-2018 IPR029056 Ribokinase-like CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 234 499 1.1E-92 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 438 448 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site CS348_21840 84a96b18b008aee555a9cdfaa58c1697 515 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 23.035 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CS348_23095 f1cf33b443fe3800e4869b134e8d9958 596 Pfam PF17425 Arylsulfotransferase Ig-like domain 49 135 3.1E-26 T 13-10-2018 IPR035391 Arylsulfotransferase, Ig-like domain CS348_23095 f1cf33b443fe3800e4869b134e8d9958 596 Pfam PF05935 Arylsulfotransferase (ASST) 153 584 5.1E-143 T 13-10-2018 IPR010262 Arylsulfotransferase, bacteria GO:0004062 CS348_23095 f1cf33b443fe3800e4869b134e8d9958 596 Gene3D G3DSA:2.60.40.3100 36 139 1.7E-32 T 13-10-2018 IPR038477 Arylsulfotransferase, N-terminal domain superfamily CS348_07885 5fa3b5b2a020c22b37add45e80d50055 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_07885 5fa3b5b2a020c22b37add45e80d50055 257 Pfam PF00005 ABC transporter 21 181 2.3E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_07885 5fa3b5b2a020c22b37add45e80d50055 257 SUPERFAMILY SSF52540 6 251 6.05E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_07885 5fa3b5b2a020c22b37add45e80d50055 257 SMART SM00382 30 229 1.1E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_07885 5fa3b5b2a020c22b37add45e80d50055 257 PIRSF PIRSF039085 2 257 1.0E-121 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CS348_07885 5fa3b5b2a020c22b37add45e80d50055 257 Gene3D G3DSA:3.40.50.300 1 257 6.3E-87 T 13-10-2018 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 SUPERFAMILY SSF55811 2 123 1.04E-26 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.4E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.4E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 Gene3D G3DSA:3.90.79.10 1 141 5.0E-44 T 13-10-2018 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 Pfam PF00293 NUDIX domain 1 132 4.2E-20 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_08170 1cc25e8bf9a501e9c0b6d7a3b8e884a6 141 Hamap MF_01846 Nucleoside triphosphatase NudI [nudI]. 1 141 46.838 T 13-10-2018 IPR023781 Nucleoside triphosphatase NudI GO:0016818 KEGG: 00230+3.6.1.9|KEGG: 00240+3.6.1.23+3.6.1.9+3.6.1.12|KEGG: 00500+3.6.1.9|KEGG: 00740+3.6.1.9|KEGG: 00760+3.6.1.9|KEGG: 00770+3.6.1.9|KEGG: 00983+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|MetaCyc: PWY-7821 CS348_14185 eeec7ee09f23ea11bdae598c3d25d8ba 125 Pfam PF07087 Protein of unknown function (DUF1353) 18 109 3.2E-29 T 13-10-2018 IPR010767 Campylobacter phage CGC-2007, Cje0229 CS348_19270 b5c8b842682984085026a74a3a50b341 385 Pfam PF05651 Putative sugar diacid recognition 6 138 5.3E-49 T 13-10-2018 IPR008599 Putative sugar diacid recognition CS348_19270 b5c8b842682984085026a74a3a50b341 385 Gene3D G3DSA:1.10.10.2840 256 385 6.0E-24 T 13-10-2018 CS348_19270 b5c8b842682984085026a74a3a50b341 385 Pfam PF13556 PucR C-terminal helix-turn-helix domain 323 380 4.9E-22 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain CS348_18220 4ee4c8415da15823d8468335e40a0a7c 337 Gene3D G3DSA:3.40.190.10 46 303 3.6E-120 T 13-10-2018 CS348_18220 4ee4c8415da15823d8468335e40a0a7c 337 Pfam PF13343 Bacterial extracellular solute-binding protein 76 306 2.4E-25 T 13-10-2018 CS348_18220 4ee4c8415da15823d8468335e40a0a7c 337 TIGRFAM TIGR03227 PhnS: 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein 1 332 2.3E-179 T 13-10-2018 IPR017637 Putative 2-aminoethylphosphonate binding protein, ABC transporter CS348_18220 4ee4c8415da15823d8468335e40a0a7c 337 SUPERFAMILY SSF53850 25 330 2.22E-53 T 13-10-2018 CS348_18220 4ee4c8415da15823d8468335e40a0a7c 337 Gene3D G3DSA:3.40.190.10 122 327 3.6E-120 T 13-10-2018 CS348_14350 4c1c172b85d434a9ffd375495d15f080 179 Pfam PF05433 Glycine zipper 2TM domain 73 113 2.2E-11 T 13-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 CS348_16740 3e26bd81f2b908c31fc0336b749fdc14 194 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 188 32.22 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CS348_16740 3e26bd81f2b908c31fc0336b749fdc14 194 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 3 187 2.7E-86 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CS348_16740 3e26bd81f2b908c31fc0336b749fdc14 194 Pfam PF02669 K+-transporting ATPase, c chain 5 186 1.5E-65 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CS348_16740 3e26bd81f2b908c31fc0336b749fdc14 194 PIRSF PIRSF001296 1 192 5.6E-73 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CS348_05605 708ef1c727e6ca2e34e22994521b23ad 343 TIGRFAM TIGR02553 SipD_IpaD_SspD: type III effector protein IpaD/SipD/SspD 25 343 2.0E-167 T 13-10-2018 IPR009483 Invasion plasmid antigen IpaD GO:0009405 CS348_05605 708ef1c727e6ca2e34e22994521b23ad 343 Gene3D G3DSA:1.20.1710.10 36 343 1.6E-149 T 13-10-2018 IPR036708 BipD-like superfamily CS348_05605 708ef1c727e6ca2e34e22994521b23ad 343 Pfam PF06511 Invasion plasmid antigen IpaD 5 341 6.6E-173 T 13-10-2018 IPR009483 Invasion plasmid antigen IpaD GO:0009405 CS348_05605 708ef1c727e6ca2e34e22994521b23ad 343 SUPERFAMILY SSF140693 49 332 2.22E-86 T 13-10-2018 IPR036708 BipD-like superfamily CS348_23120 9bc38cbef527153eee6458be82b3f7b2 326 SUPERFAMILY SSF110997 251 322 1.44E-19 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_23120 9bc38cbef527153eee6458be82b3f7b2 326 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 322 8.3E-99 T 13-10-2018 IPR011930 Cell division protein FtsN GO:0005515 CS348_23120 9bc38cbef527153eee6458be82b3f7b2 326 Hamap MF_02039 Cell division protein FtsN [ftsN]. 39 326 34.556 T 13-10-2018 IPR011930 Cell division protein FtsN GO:0005515 CS348_23120 9bc38cbef527153eee6458be82b3f7b2 326 Pfam PF05036 Sporulation related domain 253 320 3.2E-16 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CS348_23120 9bc38cbef527153eee6458be82b3f7b2 326 Gene3D G3DSA:3.30.70.1070 246 326 1.2E-34 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 SUPERFAMILY SSF52172 1 125 7.12E-27 T 13-10-2018 IPR011006 CheY-like superfamily CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 SUPERFAMILY SSF46894 130 192 1.36E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 SMART SM00448 2 112 4.8E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 138 152 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 180 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 168 2.2E-13 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 191 3.2E-22 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 Pfam PF00072 Response regulator receiver domain 4 112 2.5E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 152 179 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 SMART SM00421 135 192 1.6E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_00245 f077dec3eaa7f5897205a45dae0688b0 196 Gene3D G3DSA:3.40.50.12740 2 194 2.9E-53 T 13-10-2018 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 SUPERFAMILY SSF56024 31 209 9.42E-37 T 13-10-2018 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 Gene3D G3DSA:3.30.870.10 36 231 1.2E-34 T 13-10-2018 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 SMART SM00155 386 413 1.5E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 SMART SM00155 147 174 0.19 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 Pfam PF13091 PLD-like domain 63 206 2.2E-12 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 Pfam PF13091 PLD-like domain 296 439 5.9E-26 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 SUPERFAMILY SSF56024 261 459 2.92E-34 T 13-10-2018 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 Hamap MF_01918 Cardiolipin synthase C [clsC]. 62 495 80.704 T 13-10-2018 IPR030871 Cardiolipin synthase C GO:0032049|GO:0090483 CS348_14720 892bce5c3558a048007db8fa141c7cb8 495 Gene3D G3DSA:3.30.870.10 275 471 1.7E-37 T 13-10-2018 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Gene3D G3DSA:1.20.140.10 234 379 1.6E-40 T 13-10-2018 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Gene3D G3DSA:1.10.540.10 1 117 6.0E-19 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 PIRSF PIRSF016578 241 378 1.8E-8 T 13-10-2018 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 PIRSF PIRSF016578 6 84 5.7E-6 T 13-10-2018 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 376 5.8E-45 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Hamap MF_01052 Crotonobetainyl-CoA reductase [caiA]. 1 380 88.812 T 13-10-2018 IPR023450 Crotonobetainyl-CoA reductase CaiA GO:0009437|GO:0016627|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Gene3D G3DSA:2.40.110.10 122 233 2.4E-26 T 13-10-2018 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 SUPERFAMILY SSF47203 226 379 9.18E-45 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 215 5.2E-21 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 SUPERFAMILY SSF56645 1 227 7.07E-51 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CS348_19995 fcfb41dd91f593579425d65452caf8db 380 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 108 2.2E-14 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CS348_18660 78b5ff8562a85b8230c30019dd0cbc95 524 Pfam PF12792 CSS motif domain associated with EAL 32 229 2.4E-30 T 13-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain CS348_18660 78b5ff8562a85b8230c30019dd0cbc95 524 SUPERFAMILY SSF141868 259 502 4.32E-77 T 13-10-2018 IPR035919 EAL domain superfamily CS348_18660 78b5ff8562a85b8230c30019dd0cbc95 524 SMART SM00052 253 495 2.2E-89 T 13-10-2018 IPR001633 EAL domain CS348_18660 78b5ff8562a85b8230c30019dd0cbc95 524 Gene3D G3DSA:3.20.20.450 252 507 4.8E-81 T 13-10-2018 IPR035919 EAL domain superfamily CS348_18660 78b5ff8562a85b8230c30019dd0cbc95 524 Pfam PF00563 EAL domain 259 490 2.0E-63 T 13-10-2018 IPR001633 EAL domain CS348_11120 41defa1a8505d92a10a46211f67ecada 306 Gene3D G3DSA:1.10.3720.10 84 301 1.2E-21 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11120 41defa1a8505d92a10a46211f67ecada 306 SUPERFAMILY SSF161098 89 291 1.42E-21 T 13-10-2018 IPR035906 MetI-like superfamily CS348_11120 41defa1a8505d92a10a46211f67ecada 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 2.5E-39 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16215 571c7fc92272fab79dea3816c9c21b31 324 Gene3D G3DSA:3.40.1030.10 73 324 5.0E-104 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_16215 571c7fc92272fab79dea3816c9c21b31 324 SUPERFAMILY SSF47648 7 72 3.92E-15 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_16215 571c7fc92272fab79dea3816c9c21b31 324 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 69 7.7E-11 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_16215 571c7fc92272fab79dea3816c9c21b31 324 Gene3D G3DSA:1.20.970.10 1 72 7.3E-33 T 13-10-2018 CS348_16215 571c7fc92272fab79dea3816c9c21b31 324 SUPERFAMILY SSF52418 75 322 8.79E-47 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CS348_05070 e6066b982e3c6ee984cbbd1bed16b08e 295 SUPERFAMILY SSF103481 186 270 1.83E-7 T 13-10-2018 CS348_05070 e6066b982e3c6ee984cbbd1bed16b08e 295 SUPERFAMILY SSF103481 31 132 1.83E-10 T 13-10-2018 CS348_05070 e6066b982e3c6ee984cbbd1bed16b08e 295 Pfam PF00892 EamA-like transporter family 2 132 2.1E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_05070 e6066b982e3c6ee984cbbd1bed16b08e 295 TIGRFAM TIGR00688 rarD: protein RarD 4 246 1.7E-45 T 13-10-2018 IPR004626 RarD protein GO:0005887 CS348_25100 0bd399f49601e62e4e1c0effde17fe5c 123 SUPERFAMILY SSF88874 6 122 3.14E-30 T 13-10-2018 CS348_25100 0bd399f49601e62e4e1c0effde17fe5c 123 Pfam PF07484 Phage Tail Collar Domain 11 58 1.9E-7 T 13-10-2018 IPR011083 Phage tail collar domain CS348_25100 0bd399f49601e62e4e1c0effde17fe5c 123 Gene3D G3DSA:3.90.1340.10 7 59 1.7E-17 T 13-10-2018 IPR037053 Phage tail collar domain superfamily CS348_04220 bb2659b18b90fd203c6453547715e13b 510 Pfam PF07916 TraG-like protein, N-terminal region 8 482 1.2E-74 T 13-10-2018 IPR012931 TraG-like, N-terminal CS348_19495 7db7d135724ea9f30005441e3f52aee3 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 2.3E-30 T 13-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CS348_19495 7db7d135724ea9f30005441e3f52aee3 264 SUPERFAMILY SSF56276 41 174 2.16E-23 T 13-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 CS348_19495 7db7d135724ea9f30005441e3f52aee3 264 PIRSF PIRSF001356 1 263 9.5E-156 T 13-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CS348_19495 7db7d135724ea9f30005441e3f52aee3 264 Gene3D G3DSA:3.60.90.10 93 185 1.4E-6 T 13-10-2018 CS348_19495 7db7d135724ea9f30005441e3f52aee3 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 7.4E-149 T 13-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CS348_19495 7db7d135724ea9f30005441e3f52aee3 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 174.797 T 13-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 CS348_06710 f8f6e5c15209f9c2d2b80171202528ad 183 Gene3D G3DSA:3.40.140.10 11 178 9.6E-71 T 13-10-2018 CS348_06710 f8f6e5c15209f9c2d2b80171202528ad 183 SUPERFAMILY SSF53927 16 168 3.85E-59 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CS348_06710 f8f6e5c15209f9c2d2b80171202528ad 183 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 68 105 - T 13-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 CS348_06710 f8f6e5c15209f9c2d2b80171202528ad 183 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 23 164 48.874 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CS348_06710 f8f6e5c15209f9c2d2b80171202528ad 183 Pfam PF14437 MafB19-like deaminase 18 164 1.2E-32 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CS348_01635 ef0c6696fd70f382c7765c231cee4b5d 78 Gene3D G3DSA:1.10.10.10 1 78 4.1E-39 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01635 ef0c6696fd70f382c7765c231cee4b5d 78 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 78 24.409 T 13-10-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor CS348_01635 ef0c6696fd70f382c7765c231cee4b5d 78 Pfam PF09012 FeoC like transcriptional regulator 3 69 1.2E-15 T 13-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC CS348_01635 ef0c6696fd70f382c7765c231cee4b5d 78 SUPERFAMILY SSF46785 1 76 6.98E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_14815 3fdde8dd54063ef0700c8265fefe2595 230 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 16 230 1.6E-97 T 13-10-2018 IPR009331 Oligogalacturonate-specific porin CS348_14815 3fdde8dd54063ef0700c8265fefe2595 230 Gene3D G3DSA:2.40.160.40 23 230 5.5E-69 T 13-10-2018 CS348_14815 3fdde8dd54063ef0700c8265fefe2595 230 SUPERFAMILY SSF56935 51 230 2.26E-13 T 13-10-2018 CS348_03170 ce6881b00e259eaa11c161254516ad4f 168 Hamap MF_01956 G/U mismatch-specific DNA glycosylase [mug]. 1 168 46.151 T 13-10-2018 IPR023502 G/U mismatch-specific DNA glycosylase, bacterial GO:0006281|GO:0019104 CS348_03170 ce6881b00e259eaa11c161254516ad4f 168 SUPERFAMILY SSF52141 2 162 2.09E-44 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_03170 ce6881b00e259eaa11c161254516ad4f 168 Gene3D G3DSA:3.40.470.10 1 168 1.1E-64 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_03170 ce6881b00e259eaa11c161254516ad4f 168 Pfam PF03167 Uracil DNA glycosylase superfamily 6 159 2.8E-22 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CS348_24060 f2b106194f977075c8346cdb4c4e12cf 238 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 110 207 1.5E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_24060 f2b106194f977075c8346cdb4c4e12cf 238 SUPERFAMILY SSF56784 10 238 9.79E-41 T 13-10-2018 IPR036412 HAD-like superfamily CS348_24060 f2b106194f977075c8346cdb4c4e12cf 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 92 201 3.4E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CS348_24060 f2b106194f977075c8346cdb4c4e12cf 238 Gene3D G3DSA:1.20.120.1600 24 110 2.6E-59 T 13-10-2018 CS348_24060 f2b106194f977075c8346cdb4c4e12cf 238 Gene3D G3DSA:3.40.50.1000 12 231 2.6E-59 T 13-10-2018 IPR023214 HAD superfamily CS348_24060 f2b106194f977075c8346cdb4c4e12cf 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 15 207 1.1E-15 T 13-10-2018 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 Gene3D G3DSA:3.40.1190.20 4 264 3.0E-86 T 13-10-2018 IPR029056 Ribokinase-like CS348_08915 d534393fe8f759e4d2c313713ff84680 265 SUPERFAMILY SSF53613 13 258 1.27E-57 T 13-10-2018 IPR029056 Ribokinase-like CS348_08915 d534393fe8f759e4d2c313713ff84680 265 Pfam PF02110 Hydroxyethylthiazole kinase family 15 259 1.0E-101 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 123 137 2.7E-41 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 167 184 2.7E-41 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 30 2.7E-41 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 67 75 2.7E-41 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 93 110 2.7E-41 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 36 57 2.7E-41 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 15 260 6.8E-88 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 PIRSF PIRSF000513 9 265 6.3E-93 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_08915 d534393fe8f759e4d2c313713ff84680 265 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 17 262 29.841 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_19630 d4369ec4f0f2a1d568464c5b69435cc0 247 Hamap MF_01092 Cell division protein ZapD [zapD]. 4 247 32.908 T 13-10-2018 IPR009777 Cell division protein ZapD CS348_19630 d4369ec4f0f2a1d568464c5b69435cc0 247 Gene3D G3DSA:1.10.3900.10 13 175 3.6E-60 T 13-10-2018 CS348_19630 d4369ec4f0f2a1d568464c5b69435cc0 247 Gene3D G3DSA:2.60.440.10 176 247 3.4E-30 T 13-10-2018 IPR027462 Z ring-associated protein D, C-terminal CS348_19630 d4369ec4f0f2a1d568464c5b69435cc0 247 SUPERFAMILY SSF160950 3 247 5.36E-93 T 13-10-2018 IPR036268 ZapD domain superfamily CS348_19630 d4369ec4f0f2a1d568464c5b69435cc0 247 Pfam PF07072 Cell division protein 19 225 1.5E-78 T 13-10-2018 IPR009777 Cell division protein ZapD CS348_10975 dc1652a55671e6ce6eb535c7b821e780 76 Pfam PF06150 ChaB 9 75 2.2E-28 T 13-10-2018 IPR009317 ChaB CS348_10975 dc1652a55671e6ce6eb535c7b821e780 76 Gene3D G3DSA:1.10.1740.70 2 76 1.3E-35 T 13-10-2018 CS348_10975 dc1652a55671e6ce6eb535c7b821e780 76 SUPERFAMILY SSF140376 2 75 2.88E-28 T 13-10-2018 IPR037205 ChaB superfamily CS348_12870 7081af13a78ccaad23540339b15a45da 298 SUPERFAMILY SSF51430 4 295 3.8E-72 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_12870 7081af13a78ccaad23540339b15a45da 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 1.7E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_12870 7081af13a78ccaad23540339b15a45da 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 1.7E-7 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_12870 7081af13a78ccaad23540339b15a45da 298 Gene3D G3DSA:3.20.20.100 1 298 1.5E-117 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_12870 7081af13a78ccaad23540339b15a45da 298 Pfam PF00248 Aldo/keto reductase family 18 291 6.4E-58 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_03240 c01d2e8347e05c5d3de4bbf97a34c759 65 Pfam PF13956 Toxin Ibs, type I toxin-antitoxin system 47 65 3.8E-8 T 13-10-2018 IPR025881 Toxin Ibs CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 1.2E-39 T 13-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 Gene3D G3DSA:1.10.3130.10 2 142 1.2E-53 T 13-10-2018 CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 Gene3D G3DSA:2.160.10.10 143 273 8.9E-39 T 13-10-2018 CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 1.7E-75 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 SUPERFAMILY SSF51161 5 260 1.12E-68 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 6.2E-10 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 PIRSF PIRSF000441 75 266 2.9E-61 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CS348_00720 db9ce0a5d034e504c3548d0f3969c061 273 SMART SM00971 9 113 5.8E-65 T 13-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CS348_13040 ab9295f373b1a78decc86e5889e21ab9 96 Pfam PF06287 Protein of unknown function (DUF1039) 23 87 1.5E-27 T 13-10-2018 IPR010437 Type III secretion system SsaH CS348_13040 ab9295f373b1a78decc86e5889e21ab9 96 TIGRFAM TIGR02498 type_III_ssaH: type III secretion system protein, SsaH family 13 87 9.0E-32 T 13-10-2018 IPR010437 Type III secretion system SsaH CS348_25745 be2ac0dcf2eab5700b227a3337a7e992 152 Pfam PF01797 Transposase IS200 like 12 129 1.6E-36 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CS348_25745 be2ac0dcf2eab5700b227a3337a7e992 152 SMART SM01321 11 129 5.1E-40 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CS348_25745 be2ac0dcf2eab5700b227a3337a7e992 152 SUPERFAMILY SSF143422 2 129 6.67E-46 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 CS348_25745 be2ac0dcf2eab5700b227a3337a7e992 152 Gene3D G3DSA:3.30.70.1290 3 136 2.1E-40 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 CS348_18765 98d84de3c1b736f74fab56918e10cf9b 379 Gene3D G3DSA:3.90.1860.10 9 373 7.6E-90 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CS348_18765 98d84de3c1b736f74fab56918e10cf9b 379 Pfam PF01139 tRNA-splicing ligase RtcB 29 122 1.1E-10 T 13-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CS348_18765 98d84de3c1b736f74fab56918e10cf9b 379 TIGRFAM TIGR03073 release_rtcB: release factor H-coupled RctB family protein 12 367 1.9E-193 T 13-10-2018 IPR017510 Release factor H-coupled RctB family protein CS348_18765 98d84de3c1b736f74fab56918e10cf9b 379 SUPERFAMILY SSF103365 5 372 7.85E-107 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CS348_18765 98d84de3c1b736f74fab56918e10cf9b 379 Pfam PF01139 tRNA-splicing ligase RtcB 114 372 2.1E-58 T 13-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CS348_15140 45d6ad5c5a38eeb813807950348c6554 169 Pfam PF03846 Cell division inhibitor SulA 7 119 8.8E-53 T 13-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 CS348_15140 45d6ad5c5a38eeb813807950348c6554 169 Gene3D G3DSA:3.40.50.300 31 146 1.4E-21 T 13-10-2018 CS348_15140 45d6ad5c5a38eeb813807950348c6554 169 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 169 40.841 T 13-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 CS348_15140 45d6ad5c5a38eeb813807950348c6554 169 TIGRFAM TIGR00623 sula: cell division inhibitor SulA 2 169 1.7E-100 T 13-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 CS348_15140 45d6ad5c5a38eeb813807950348c6554 169 PIRSF PIRSF003093 1 169 1.7E-87 T 13-10-2018 IPR004596 Cell division suppressor protein, SulA GO:0009432|GO:0051782 CS348_15140 45d6ad5c5a38eeb813807950348c6554 169 SUPERFAMILY SSF52540 31 147 3.4E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 328 434 4.2E-27 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 Gene3D G3DSA:3.50.50.60 8 303 1.9E-88 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 40 50 - T 13-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 404 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 160 185 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 431 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 123 132 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 244 258 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 54 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 287 294 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 324 345 7.6E-49 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 Gene3D G3DSA:3.30.390.30 326 441 6.5E-30 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 SUPERFAMILY SSF55424 324 437 1.07E-31 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 297 7.1E-56 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 SUPERFAMILY SSF51905 1 296 2.24E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PIRSF PIRSF000350 1 437 1.1E-87 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 Gene3D G3DSA:3.50.50.60 132 250 1.9E-88 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 120 138 2.5E-25 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 160 178 2.5E-25 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 243 259 2.5E-25 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.5E-25 T 13-10-2018 CS348_17390 c09d7f8b365cd117213ea39cf8e85540 441 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 272 294 2.5E-25 T 13-10-2018 CS348_22110 d26ca66f85aadb1f5815513caeb6dfbe 95 SUPERFAMILY SSF46894 21 86 1.63E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_22110 d26ca66f85aadb1f5815513caeb6dfbe 95 Gene3D G3DSA:1.10.10.10 2 93 1.1E-10 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_22110 d26ca66f85aadb1f5815513caeb6dfbe 95 Pfam PF00196 Bacterial regulatory proteins, luxR family 30 83 1.9E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_22110 d26ca66f85aadb1f5815513caeb6dfbe 95 SMART SM00421 27 84 6.3E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21095 9691d558b2bdf4b28782116ad0553100 153 Pfam PF03625 Domain of unknown function DUF302 63 123 4.1E-16 T 13-10-2018 IPR005180 Domain of unknown function DUF302 CS348_21095 9691d558b2bdf4b28782116ad0553100 153 SUPERFAMILY SSF103247 33 148 2.22E-26 T 13-10-2018 IPR035923 TT1751-like domain superfamily CS348_21095 9691d558b2bdf4b28782116ad0553100 153 Gene3D G3DSA:3.30.310.70 31 153 6.2E-11 T 13-10-2018 IPR035923 TT1751-like domain superfamily CS348_08330 41d82e44f9d78b2ae376481844d94d26 350 Pfam PF02424 ApbE family 41 323 1.3E-77 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 CS348_08330 41d82e44f9d78b2ae376481844d94d26 350 Gene3D G3DSA:3.10.520.20 20 350 1.7E-133 T 13-10-2018 CS348_08330 41d82e44f9d78b2ae376481844d94d26 350 SUPERFAMILY SSF143631 35 345 4.18E-93 T 13-10-2018 IPR003374 ApbE-like superfamily CS348_08330 41d82e44f9d78b2ae376481844d94d26 350 PIRSF PIRSF006268 1 347 1.5E-88 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 CS348_23265 0a670e729f4b656164f151ff6aac2df1 251 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 29 247 2.5E-91 T 13-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 CS348_23265 0a670e729f4b656164f151ff6aac2df1 251 TIGRFAM TIGR00672 cdh: CDP-diacylglycerol diphosphatase 1 249 8.2E-154 T 13-10-2018 IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 CS348_23265 0a670e729f4b656164f151ff6aac2df1 251 SUPERFAMILY SSF54197 29 247 3.74E-92 T 13-10-2018 IPR036265 HIT-like superfamily CS348_23265 0a670e729f4b656164f151ff6aac2df1 251 PIRSF PIRSF001273 1 251 5.2E-103 T 13-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 CS348_23265 0a670e729f4b656164f151ff6aac2df1 251 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 1 249 52.083 T 13-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 CS348_23265 0a670e729f4b656164f151ff6aac2df1 251 Gene3D G3DSA:3.30.428.30 25 249 7.9E-96 T 13-10-2018 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily KEGG: 00564+3.6.1.26 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 SUPERFAMILY SSF50443 329 498 6.28E-71 T 13-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 Pfam PF11762 L-arabinose isomerase C-terminal domain 363 476 1.1E-45 T 13-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 SUPERFAMILY SSF53743 1 326 1.02E-124 T 13-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 1 303 2.0E-180 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 Hamap MF_00519 L-arabinose isomerase [araA]. 1 477 64.907 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 Gene3D G3DSA:3.40.50.10940 1 175 2.4E-91 T 13-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 PIRSF PIRSF001478 1 500 1.4E-259 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 CS348_19830 008ada199bf6a912ee61e98cf68ca82c 500 Pfam PF02610 L-arabinose isomerase 5 359 1.4E-179 T 13-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 Pfam PF00027 Cyclic nucleotide-binding domain 46 126 1.1E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 SUPERFAMILY SSF51206 36 152 3.93E-24 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 SUPERFAMILY SSF46785 161 231 9.68E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 SMART SM00100 25 143 1.4E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 Gene3D G3DSA:1.10.10.10 158 230 1.1E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 Pfam PF13545 Crp-like helix-turn-helix domain 163 229 2.4E-8 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CS348_24250 3d5fe5c9ec919753d57a4b31792efb3b 233 Gene3D G3DSA:2.60.120.10 31 155 2.8E-23 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_00090 b1ad1f8ee47ffa0c31103247c447c29e 205 Pfam PF00005 ABC transporter 19 153 2.7E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_00090 b1ad1f8ee47ffa0c31103247c447c29e 205 Gene3D G3DSA:3.40.50.300 1 201 9.2E-45 T 13-10-2018 CS348_00090 b1ad1f8ee47ffa0c31103247c447c29e 205 ProSitePatterns PS00211 ABC transporters family signature. 126 140 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_00090 b1ad1f8ee47ffa0c31103247c447c29e 205 SUPERFAMILY SSF52540 2 185 2.38E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00090 b1ad1f8ee47ffa0c31103247c447c29e 205 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 197 1.8E-78 T 13-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 CS348_00090 b1ad1f8ee47ffa0c31103247c447c29e 205 SMART SM00382 26 202 7.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 Pfam PF00854 POT family 82 443 9.2E-92 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 Gene3D G3DSA:1.20.1250.20 5 483 2.6E-112 T 13-10-2018 CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 SUPERFAMILY SSF103473 304 480 2.75E-6 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 483 1.7E-187 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 SUPERFAMILY SSF103473 9 289 1.96E-22 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 Hamap MF_01879 Dipeptide and tripeptide permease B [dtpB]. 3 486 45.926 T 13-10-2018 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B CS348_01275 b5f47939d49b27ae0495a574aee44c62 490 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 145 157 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_00570 cd71a90e13dd4c61fa11cbe423a7531d 221 Hamap MF_00018 UPF0758 protein YicR [yicR]. 1 221 54.002 T 13-10-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily CS348_00570 cd71a90e13dd4c61fa11cbe423a7531d 221 Pfam PF04002 RadC-like JAB domain 102 219 8.5E-45 T 13-10-2018 IPR025657 RadC-like JAB domain CS348_00570 cd71a90e13dd4c61fa11cbe423a7531d 221 TIGRFAM TIGR00608 radc: DNA repair protein RadC 9 221 9.2E-92 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 CS348_00570 cd71a90e13dd4c61fa11cbe423a7531d 221 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 170 175 - T 13-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site CS348_00570 cd71a90e13dd4c61fa11cbe423a7531d 221 SUPERFAMILY SSF47781 17 84 6.99E-10 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_00570 cd71a90e13dd4c61fa11cbe423a7531d 221 Gene3D G3DSA:3.40.140.10 98 221 5.2E-45 T 13-10-2018 CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 SUPERFAMILY SSF53383 16 355 3.99E-79 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 Gene3D G3DSA:3.90.1150.10 12 350 2.3E-135 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 12 358 54.611 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 Pfam PF00155 Aminotransferase class I and II 49 354 3.5E-65 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 Gene3D G3DSA:3.40.640.10 57 261 2.3E-135 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 14 355 6.5E-124 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CS348_09285 a6d9d4057c2a48593a5f75a399923847 359 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 214 223 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 CS348_16915 8aa455df3f9a57b5f4e2b2cd6245f9cd 157 Gene3D G3DSA:3.40.390.30 1 155 9.9E-62 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 CS348_16915 8aa455df3f9a57b5f4e2b2cd6245f9cd 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site CS348_16915 8aa455df3f9a57b5f4e2b2cd6245f9cd 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 2.0E-37 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CS348_16915 8aa455df3f9a57b5f4e2b2cd6245f9cd 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 24.625 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CS348_16915 8aa455df3f9a57b5f4e2b2cd6245f9cd 157 SUPERFAMILY SSF55486 3 151 8.06E-50 T 13-10-2018 CS348_16915 8aa455df3f9a57b5f4e2b2cd6245f9cd 157 Pfam PF02130 Uncharacterized protein family UPF0054 21 142 4.2E-38 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CS348_05810 12266647131343461694dfb4658935ee 156 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 140 6.7E-35 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 TIGRFAM TIGR00142 hycI: hydrogenase maturation peptidase HycI 3 147 6.5E-67 T 13-10-2018 IPR004420 Peptidase A31, hydrogenase maturation protease HycI GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 SUPERFAMILY SSF53163 4 151 9.68E-36 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_05810 12266647131343461694dfb4658935ee 156 Gene3D G3DSA:3.40.50.1450 1 156 7.6E-64 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_05810 12266647131343461694dfb4658935ee 156 PRINTS PR00446 Hydrogen uptake protein signature 3 15 4.1E-13 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 PRINTS PR00446 Hydrogen uptake protein signature 15 26 4.1E-13 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 PRINTS PR00446 Hydrogen uptake protein signature 56 66 4.1E-13 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 PRINTS PR00446 Hydrogen uptake protein signature 33 50 4.1E-13 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 PRINTS PR00446 Hydrogen uptake protein signature 67 83 4.1E-13 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_05810 12266647131343461694dfb4658935ee 156 Pfam PF01750 Hydrogenase maturation protease 28 140 3.5E-29 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 Gene3D G3DSA:1.20.120.530 80 216 4.9E-26 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 Pfam PF07729 FCD domain 86 204 5.5E-21 T 13-10-2018 IPR011711 GntR, C-terminal CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 SUPERFAMILY SSF48008 83 212 6.02E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 SMART SM00895 86 206 8.3E-18 T 13-10-2018 IPR011711 GntR, C-terminal CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 SMART SM00345 18 76 1.5E-6 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 Gene3D G3DSA:1.10.10.10 11 76 6.7E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 1.3E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_02440 bd0e6fd86fbfefba993f30b62768bc3e 221 SUPERFAMILY SSF46785 13 80 2.62E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 193 203 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 SUPERFAMILY SSF53681 2 116 5.89E-35 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 Gene3D G3DSA:3.40.50.1860 104 215 6.6E-84 T 13-10-2018 CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 Gene3D G3DSA:3.40.50.1860 2 221 6.6E-84 T 13-10-2018 CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 TIGRFAM TIGR00035 asp_race: aspartate racemase 2 231 2.9E-61 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 1.4E-56 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_04920 fdcf6016147ed96c54089941e74c0e0f 235 SUPERFAMILY SSF53681 118 229 1.64E-31 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_05845 119f34c91e04c723a81a48a704152073 321 Gene3D G3DSA:3.40.50.10490 2 193 5.0E-56 T 13-10-2018 CS348_05845 119f34c91e04c723a81a48a704152073 321 SUPERFAMILY SSF54631 261 317 3.11E-10 T 13-10-2018 CS348_05845 119f34c91e04c723a81a48a704152073 321 Gene3D G3DSA:3.10.580.10 194 318 3.9E-33 T 13-10-2018 CS348_05845 119f34c91e04c723a81a48a704152073 321 PIRSF PIRSF004692 1 321 6.7E-122 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CS348_05845 119f34c91e04c723a81a48a704152073 321 Pfam PF01380 SIS domain 39 169 1.5E-30 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_05845 119f34c91e04c723a81a48a704152073 321 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 43 311 9.7E-132 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CS348_05845 119f34c91e04c723a81a48a704152073 321 SUPERFAMILY SSF53697 10 255 4.89E-53 T 13-10-2018 CS348_05845 119f34c91e04c723a81a48a704152073 321 Pfam PF00571 CBS domain 265 315 2.5E-5 T 13-10-2018 IPR000644 CBS domain CS348_05845 119f34c91e04c723a81a48a704152073 321 Pfam PF00571 CBS domain 215 256 0.0043 T 13-10-2018 IPR000644 CBS domain CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 52.687 T 13-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 Gene3D G3DSA:3.20.20.70 1 242 3.9E-88 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 SUPERFAMILY SSF51395 1 307 1.25E-71 T 13-10-2018 CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 Pfam PF01207 Dihydrouridine synthase (Dus) 5 286 1.3E-92 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 PIRSF PIRSF006621 1 312 2.2E-87 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CS348_08770 e7f0d5913adf9e4e36da1728c9d64403 312 Gene3D G3DSA:1.20.225.30 243 312 1.5E-36 T 13-10-2018 CS348_19170 b234c7b5485902efaddcac57e310709b 161 Pfam PF03938 Outer membrane protein (OmpH-like) 8 159 6.1E-29 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 CS348_19170 b234c7b5485902efaddcac57e310709b 161 SMART SM00935 10 161 4.4E-39 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 CS348_19170 b234c7b5485902efaddcac57e310709b 161 Gene3D G3DSA:3.30.910.20 19 161 1.2E-48 T 13-10-2018 IPR024930 Skp domain superfamily CS348_19170 b234c7b5485902efaddcac57e310709b 161 SUPERFAMILY SSF111384 20 160 1.07E-31 T 13-10-2018 CS348_19170 b234c7b5485902efaddcac57e310709b 161 PIRSF PIRSF002094 1 161 1.8E-49 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 CS348_07045 ab5482032616fb9fbb4d812426191c34 63 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 1 63 2.0E-30 T 13-10-2018 IPR022576 Protein of unknown function DUF2633 CS348_07045 ab5482032616fb9fbb4d812426191c34 63 Pfam PF11119 Protein of unknown function (DUF2633) 9 62 1.1E-31 T 13-10-2018 IPR022576 Protein of unknown function DUF2633 CS348_12790 bd7aa01bbdd60b195dedaa87d7c998c9 206 SMART SM00900 99 191 2.2E-35 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 CS348_12790 bd7aa01bbdd60b195dedaa87d7c998c9 206 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 192 7.9E-68 T 13-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 CS348_12790 bd7aa01bbdd60b195dedaa87d7c998c9 206 PIRSF PIRSF006091 1 202 2.2E-70 T 13-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 CS348_12790 bd7aa01bbdd60b195dedaa87d7c998c9 206 Pfam PF04205 FMN-binding domain 99 187 6.1E-19 T 13-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 CS348_12790 bd7aa01bbdd60b195dedaa87d7c998c9 206 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 193 26.986 T 13-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 CS348_14840 91832c27aca11d7d1fe9b3c8d7f6f1f2 293 Gene3D G3DSA:1.10.10.10 9 89 1.9E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_14840 91832c27aca11d7d1fe9b3c8d7f6f1f2 293 SUPERFAMILY SSF46689 12 86 3.58E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_14840 91832c27aca11d7d1fe9b3c8d7f6f1f2 293 Pfam PF01380 SIS domain 140 268 4.8E-20 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_14840 91832c27aca11d7d1fe9b3c8d7f6f1f2 293 Gene3D G3DSA:3.40.50.10490 111 288 1.7E-42 T 13-10-2018 CS348_14840 91832c27aca11d7d1fe9b3c8d7f6f1f2 293 Pfam PF01418 Helix-turn-helix domain, rpiR family 13 86 1.1E-22 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CS348_14840 91832c27aca11d7d1fe9b3c8d7f6f1f2 293 SUPERFAMILY SSF53697 112 283 3.67E-39 T 13-10-2018 CS348_06480 fbe2f40752d1d30465bc30e105d817e7 245 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 244 2.2E-88 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD CS348_06480 fbe2f40752d1d30465bc30e105d817e7 245 SUPERFAMILY SSF48452 27 121 4.51E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_06480 fbe2f40752d1d30465bc30e105d817e7 245 Pfam PF13525 Outer membrane lipoprotein 28 236 3.9E-85 T 13-10-2018 IPR039565 Outer membrane lipoprotein BamD-like CS348_06480 fbe2f40752d1d30465bc30e105d817e7 245 Gene3D G3DSA:1.25.40.10 29 245 6.4E-63 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_06480 fbe2f40752d1d30465bc30e105d817e7 245 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 39.323 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD CS348_12610 2caeedecc07b57b2d22f257a52222893 299 SUPERFAMILY SSF53850 89 297 2.02E-39 T 13-10-2018 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.9E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 7.8E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 7.8E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 7.8E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 Gene3D G3DSA:3.40.190.10 165 270 7.0E-58 T 13-10-2018 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 SUPERFAMILY SSF46785 4 89 5.62E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12610 2caeedecc07b57b2d22f257a52222893 299 Gene3D G3DSA:3.40.190.10 90 289 7.0E-58 T 13-10-2018 CS348_12610 2caeedecc07b57b2d22f257a52222893 299 Pfam PF03466 LysR substrate binding domain 88 293 1.6E-44 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_12610 2caeedecc07b57b2d22f257a52222893 299 Gene3D G3DSA:1.10.10.10 1 87 1.0E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21195 3f0a3dc90d430fa29c95c74fc8695c3c 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 358 6.3E-73 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 CS348_21195 3f0a3dc90d430fa29c95c74fc8695c3c 360 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 6 358 1.7E-138 T 13-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 SMART SM01134 73 233 2.9E-63 T 13-10-2018 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 Pfam PF00455 DeoR C terminal sensor domain 76 231 9.3E-47 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 SMART SM00420 6 58 8.2E-20 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 SUPERFAMILY SSF100950 77 234 6.49E-27 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 7.4E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 7.4E-9 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 9.2E-18 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_19500 06728a0cdcf2f33e25a56dceafb674d7 255 SUPERFAMILY SSF46785 5 74 2.03E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_17400 d7e4a662f32ece9a49be647bafd06f1b 68 Pfam PF00873 AcrB/AcrD/AcrF family 1 57 4.6E-10 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CS348_17400 d7e4a662f32ece9a49be647bafd06f1b 68 SUPERFAMILY SSF82866 2 63 3.92E-12 T 13-10-2018 CS348_17400 d7e4a662f32ece9a49be647bafd06f1b 68 Gene3D G3DSA:1.20.1640.10 1 67 3.1E-19 T 13-10-2018 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 148 163 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 27 47 4.4E-70 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 169 190 4.4E-70 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 47 66 4.4E-70 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 8 27 4.4E-70 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 148 168 4.4E-70 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 193 218 4.4E-70 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 196 208 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 7 215 9.8E-90 T 13-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 CS348_05570 54737161acd224b8eeb84284c4ff69a0 224 Pfam PF00813 FliP family 10 215 3.7E-63 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_20715 103bbcf9f43da470183d57792c91d19e 597 Pfam PF00665 Integrase core domain 153 306 1.1E-9 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CS348_20715 103bbcf9f43da470183d57792c91d19e 597 SUPERFAMILY SSF53098 202 345 9.41E-12 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_20715 103bbcf9f43da470183d57792c91d19e 597 Gene3D G3DSA:3.30.420.10 201 347 5.1E-7 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_13855 209be15853d37421ba39f1b7a062bb7a 183 Gene3D G3DSA:3.40.109.10 1 183 4.4E-43 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CS348_13855 209be15853d37421ba39f1b7a062bb7a 183 PIRSF PIRSF000232 1 182 8.0E-67 T 13-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like CS348_13855 209be15853d37421ba39f1b7a062bb7a 183 SUPERFAMILY SSF55469 1 168 7.85E-36 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CS348_13855 209be15853d37421ba39f1b7a062bb7a 183 Pfam PF00881 Nitroreductase family 9 161 1.7E-22 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 Gene3D G3DSA:1.25.40.10 113 196 3.7E-28 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 SUPERFAMILY SSF48452 115 246 1.16E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 SUPERFAMILY SSF52833 2 112 1.47E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 Gene3D G3DSA:3.40.30.10 1 112 7.7E-30 T 13-10-2018 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 Pfam PF00085 Thioredoxin 6 108 7.7E-19 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 Pfam PF14559 Tetratricopeptide repeat 124 190 9.9E-22 T 13-10-2018 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 Gene3D G3DSA:1.25.40.10 197 284 7.8E-25 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_17835 e9259fa2daced62d3a38be4b6b0ef40a 284 Pfam PF14561 Tetratricopeptide repeat 195 284 4.9E-28 T 13-10-2018 CS348_05235 23ed0c1e9c1b5be13ff4bf674448b16d 118 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 24 100 4.6E-19 T 13-10-2018 IPR022789 Antitoxin ParD CS348_05235 23ed0c1e9c1b5be13ff4bf674448b16d 118 SUPERFAMILY SSF47598 27 67 3.56E-9 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_05235 23ed0c1e9c1b5be13ff4bf674448b16d 118 Gene3D G3DSA:1.10.8.1250 33 107 2.0E-21 T 13-10-2018 IPR038296 Antitoxin ParD superfamily CS348_05235 23ed0c1e9c1b5be13ff4bf674448b16d 118 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 27 97 3.6E-25 T 13-10-2018 IPR022789 Antitoxin ParD CS348_01600 65839699d0a7232b83590d5f78b0805f 797 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 8 794 0.0 T 13-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01600 65839699d0a7232b83590d5f78b0805f 797 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 638 650 - T 13-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01600 65839699d0a7232b83590d5f78b0805f 797 PIRSF PIRSF000460 1 797 3.1E-203 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01600 65839699d0a7232b83590d5f78b0805f 797 Gene3D G3DSA:3.40.50.2000 452 780 0.0 T 13-10-2018 CS348_01600 65839699d0a7232b83590d5f78b0805f 797 Pfam PF00343 Carbohydrate phosphorylase 93 794 0.0 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01600 65839699d0a7232b83590d5f78b0805f 797 SUPERFAMILY SSF53756 5 795 7.85E-293 T 13-10-2018 CS348_01600 65839699d0a7232b83590d5f78b0805f 797 Gene3D G3DSA:3.40.50.2000 60 794 0.0 T 13-10-2018 CS348_13510 351dab030245320d99eb82d0219b2722 164 Pfam PF05926 Phage head completion protein (GPL) 26 164 2.9E-47 T 13-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 CS348_01095 9ba9368dcc6227b82e3f5d1190e29207 432 Gene3D G3DSA:1.20.1740.10 29 430 2.7E-6 T 13-10-2018 CS348_01095 9ba9368dcc6227b82e3f5d1190e29207 432 Pfam PF03222 Tryptophan/tyrosine permease family 30 408 6.8E-5 T 13-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 CS348_25570 50e04508c6b61f2c961e28a389e9c507 72 Pfam PF07362 Post-segregation antitoxin CcdA 2 72 4.9E-26 T 13-10-2018 IPR009956 Post-segregation antitoxin CcdA CS348_25570 50e04508c6b61f2c961e28a389e9c507 72 Gene3D G3DSA:1.10.1220.80 12 41 2.9E-24 T 13-10-2018 CS348_22575 5601a378d07c74ff6bd343b9e21f1eab 698 Pfam PF06082 Exopolysaccharide biosynthesis protein YbjH 30 691 2.7E-265 T 13-10-2018 IPR010344 Exopolysaccharide biosynthesis protein YbjH CS348_13310 8ed56417670788b6df0a8d4725444434 254 SMART SM00893 23 211 2.9E-34 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_13310 8ed56417670788b6df0a8d4725444434 254 PIRSF PIRSF000090 1 254 1.1E-57 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CS348_13310 8ed56417670788b6df0a8d4725444434 254 Pfam PF01012 Electron transfer flavoprotein domain 28 206 3.5E-35 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_13310 8ed56417670788b6df0a8d4725444434 254 SUPERFAMILY SSF52402 1 238 1.4E-52 T 13-10-2018 CS348_13310 8ed56417670788b6df0a8d4725444434 254 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 13-10-2018 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CS348_13310 8ed56417670788b6df0a8d4725444434 254 Gene3D G3DSA:3.40.50.620 1 251 1.3E-57 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_18705 c7b9aa9805b42869a5b2ea4aa4773435 441 Pfam PF00419 Fimbrial protein 259 441 1.5E-28 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_18705 c7b9aa9805b42869a5b2ea4aa4773435 441 PIRSF PIRSF029766 4 441 1.2E-191 T 13-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 CS348_18705 c7b9aa9805b42869a5b2ea4aa4773435 441 SUPERFAMILY SSF49401 266 441 1.19E-10 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_18705 c7b9aa9805b42869a5b2ea4aa4773435 441 Gene3D G3DSA:2.60.40.1090 259 440 5.8E-9 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_05520 0fbd2d110b3e8bb904d65412aa5cd6de 147 ProDom PD004896 INVH LIPOPROTEIN MEMBRANE PALMITATE ADHERANCE/INVASION OUTER PRECURSOR INVASION VIRULENCE SIGNAL 1 147 4.0E-69 T 13-10-2018 IPR006830 InvH outer membrane lipoprotein GO:0009405 CS348_05520 0fbd2d110b3e8bb904d65412aa5cd6de 147 Pfam PF04741 InvH outer membrane lipoprotein 1 147 5.9E-102 T 13-10-2018 IPR006830 InvH outer membrane lipoprotein GO:0009405 CS348_16285 57a2265071d5a590802ad76cec81fe5c 235 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 220 4.1E-13 T 13-10-2018 IPR006214 Bax inhibitor 1-related CS348_18405 050e5e5afcbdd884eefb379548641787 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 7.7E-128 T 13-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 CS348_18405 050e5e5afcbdd884eefb379548641787 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 43.52 T 13-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.068 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-14 T 13-10-2018 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 2.4E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 2.4E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 2.4E-42 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 Pfam PF00453 Ribosomal protein L20 3 109 5.2E-49 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 5.3E-53 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 Gene3D G3DSA:1.10.720.90 2 55 5.5E-25 T 13-10-2018 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 SUPERFAMILY SSF74731 3 117 2.62E-50 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_13640 fde9fa85e2bb35caa2b2d6f368888a0a 118 Gene3D G3DSA:1.10.1900.20 56 118 4.5E-29 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_14080 b300a24764eb466a6332933def2fac81 270 SUPERFAMILY SSF161098 65 256 4.32E-21 T 13-10-2018 IPR035906 MetI-like superfamily CS348_14080 b300a24764eb466a6332933def2fac81 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 262 8.1E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_14080 b300a24764eb466a6332933def2fac81 270 Gene3D G3DSA:1.10.3720.10 61 263 6.4E-17 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16605 c7fd70ca0decd2fba3460690952fc8c4 37 Pfam PF08173 Membrane bound YbgT-like protein 1 26 1.3E-14 T 13-10-2018 IPR012994 Membrane bound YbgT-like CS348_16605 c7fd70ca0decd2fba3460690952fc8c4 37 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 5.3E-20 T 13-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 CS348_17540 65e2db26d9fe9e6ccd72f2c036a53e46 702 Pfam PF05876 Phage terminase large subunit (GpA) 36 646 2.5E-192 T 13-10-2018 IPR008866 Bacteriophage lambda, GpA CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 Gene3D G3DSA:1.10.10.10 8 77 4.3E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 SUPERFAMILY SSF46785 7 73 1.93E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 Gene3D G3DSA:3.40.640.10 116 329 6.5E-48 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 SUPERFAMILY SSF53383 84 429 2.19E-61 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 SMART SM00345 10 69 7.5E-20 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 69 3.9E-18 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 Gene3D G3DSA:3.90.1150.10 89 418 6.5E-48 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_07385 657ffb0e1d3592c21bf9969eef7295da 430 Pfam PF00155 Aminotransferase class I and II 109 422 2.0E-25 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_18140 197a03311694c2de0efabf60e64e92f0 105 Gene3D G3DSA:3.30.300.90 1 90 2.8E-34 T 13-10-2018 CS348_18140 197a03311694c2de0efabf60e64e92f0 105 SUPERFAMILY SSF82657 1 89 8.24E-30 T 13-10-2018 IPR036065 BolA-like superfamily CS348_18140 197a03311694c2de0efabf60e64e92f0 105 PIRSF PIRSF003113 1 100 8.4E-32 T 13-10-2018 IPR002634 BolA protein CS348_18140 197a03311694c2de0efabf60e64e92f0 105 Pfam PF01722 BolA-like protein 11 84 1.7E-27 T 13-10-2018 IPR002634 BolA protein CS348_19635 6aa8fec67e804d97ce8a347366333fd9 63 SUPERFAMILY SSF57716 3 61 1.92E-22 T 13-10-2018 CS348_19635 6aa8fec67e804d97ce8a347366333fd9 63 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 59 19.578 T 13-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 CS348_19635 6aa8fec67e804d97ce8a347366333fd9 63 Pfam PF03884 DNA gyrase inhibitor YacG 7 57 1.8E-25 T 13-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 CS348_19635 6aa8fec67e804d97ce8a347366333fd9 63 Gene3D G3DSA:3.30.50.10 1 63 1.0E-27 T 13-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 Gene3D G3DSA:3.30.870.10 18 447 2.9E-176 T 13-10-2018 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 SMART SM00155 352 379 1.4E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 SMART SM00155 133 159 0.012 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 Gene3D G3DSA:3.30.870.10 24 232 2.9E-176 T 13-10-2018 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 Pfam PF13091 PLD-like domain 40 153 2.1E-6 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 Pfam PF13091 PLD-like domain 257 405 8.2E-22 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 PIRSF PIRSF000850 1 451 1.1E-269 T 13-10-2018 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 SUPERFAMILY SSF56024 252 393 1.82E-18 T 13-10-2018 CS348_06535 3fcd8ad69fb705d2f15d456c59ce2b5b 451 SUPERFAMILY SSF56024 9 214 6.91E-28 T 13-10-2018 CS348_17150 8df2dcbbf95f897e53300a9273fe7b72 268 SUPERFAMILY SSF55895 33 262 3.66E-27 T 13-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 CS348_17150 8df2dcbbf95f897e53300a9273fe7b72 268 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 75 82 - T 13-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 CS348_17150 8df2dcbbf95f897e53300a9273fe7b72 268 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 148 159 - T 13-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 CS348_17150 8df2dcbbf95f897e53300a9273fe7b72 268 Gene3D G3DSA:3.90.730.10 25 268 1.8E-87 T 13-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 CS348_17150 8df2dcbbf95f897e53300a9273fe7b72 268 Pfam PF00445 Ribonuclease T2 family 38 236 5.4E-12 T 13-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 CS348_07370 08374c57d0d144d53039da70f589d4b8 303 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 6.4E-127 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CS348_07370 08374c57d0d144d53039da70f589d4b8 303 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 281 4.2E-69 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_07370 08374c57d0d144d53039da70f589d4b8 303 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 1.0E-166 T 13-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CS348_07370 08374c57d0d144d53039da70f589d4b8 303 SUPERFAMILY SSF53686 3 289 7.73E-94 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_07370 08374c57d0d144d53039da70f589d4b8 303 Gene3D G3DSA:3.40.50.1100 35 140 1.2E-116 T 13-10-2018 CS348_07370 08374c57d0d144d53039da70f589d4b8 303 Gene3D G3DSA:3.40.50.1100 7 288 1.2E-116 T 13-10-2018 CS348_07370 08374c57d0d144d53039da70f589d4b8 303 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 2.0E-17 T 13-10-2018 IPR000362 Fumarate lyase family CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.0E-17 T 13-10-2018 IPR000362 Fumarate lyase family CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 2.0E-17 T 13-10-2018 IPR000362 Fumarate lyase family CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 2.0E-17 T 13-10-2018 IPR000362 Fumarate lyase family CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 Gene3D G3DSA:1.20.200.10 118 446 1.4E-159 T 13-10-2018 CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 SUPERFAMILY SSF48557 10 454 3.77E-106 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 Pfam PF00206 Lyase 14 312 1.3E-82 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 Gene3D G3DSA:1.10.275.10 1 117 4.2E-54 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 1.9E-52 T 13-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 Gene3D G3DSA:1.10.40.30 382 445 1.4E-159 T 13-10-2018 CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 CS348_14245 22ff88222d19d0e97fc3bdbfd0cf67bf 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 2.2E-155 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 SMART SM00387 358 469 1.8E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 463 2.3E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 Gene3D G3DSA:1.10.287.130 197 312 4.8E-14 T 13-10-2018 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 SUPERFAMILY SSF47384 229 308 4.9E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 Pfam PF08521 Two-component sensor kinase N-terminal 21 169 8.1E-39 T 13-10-2018 IPR013727 Two-component sensor kinase, N-terminal CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 SMART SM00388 246 311 2.7E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 SMART SM00304 193 245 1.3E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 SUPERFAMILY SSF55874 317 464 3.67E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 3.8E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 PRINTS PR00344 Bacterial sensor protein C-terminal signature 428 446 3.8E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_06165 fee09a9b86cbc4a4bb249e51d98bae48 471 Gene3D G3DSA:3.30.565.10 325 467 1.4E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_20185 8f2c2d642ccb0996275b898df8349530 497 SUPERFAMILY SSF53649 29 478 4.36E-124 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_20185 8f2c2d642ccb0996275b898df8349530 497 ProSitePatterns PS00523 Sulfatases signature 1. 77 89 - T 13-10-2018 IPR024607 Sulfatase, conserved site CS348_20185 8f2c2d642ccb0996275b898df8349530 497 Gene3D G3DSA:3.40.720.10 30 406 3.0E-143 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_20185 8f2c2d642ccb0996275b898df8349530 497 Gene3D G3DSA:3.30.1120.10 407 486 5.3E-40 T 13-10-2018 CS348_20185 8f2c2d642ccb0996275b898df8349530 497 Pfam PF00884 Sulfatase 31 378 2.5E-72 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 SUPERFAMILY SSF55486 204 450 9.52E-76 T 13-10-2018 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Gene3D G3DSA:2.60.40.1730 15 194 2.5E-70 T 13-10-2018 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Gene3D G3DSA:1.25.50.10 546 870 2.2E-127 T 13-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 1.1E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 1.1E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 1.1E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 1.1E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 1.1E-8 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Gene3D G3DSA:2.60.40.1840 444 545 7.1E-37 T 13-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Pfam PF01433 Peptidase family M1 domain 208 439 3.2E-60 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 SUPERFAMILY SSF63737 1 193 1.83E-46 T 13-10-2018 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Gene3D G3DSA:1.10.1740.60 195 279 2.9E-41 T 13-10-2018 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Gene3D G3DSA:1.10.390.10 280 443 6.8E-68 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 545 6.9E-33 T 13-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 13-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 CS348_15210 554fd84fea030c5c887af7bf45665d1e 870 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 1.1E-119 T 13-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal CS348_08535 16bb06e55cf23d79e544b9684bda437c 518 Pfam PF12792 CSS motif domain associated with EAL 43 240 3.0E-42 T 13-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain CS348_08535 16bb06e55cf23d79e544b9684bda437c 518 Pfam PF00563 EAL domain 267 500 1.2E-66 T 13-10-2018 IPR001633 EAL domain CS348_08535 16bb06e55cf23d79e544b9684bda437c 518 Gene3D G3DSA:3.20.20.450 261 514 2.3E-76 T 13-10-2018 IPR035919 EAL domain superfamily CS348_08535 16bb06e55cf23d79e544b9684bda437c 518 SMART SM00052 260 505 7.5E-98 T 13-10-2018 IPR001633 EAL domain CS348_08535 16bb06e55cf23d79e544b9684bda437c 518 SUPERFAMILY SSF141868 267 512 4.18E-72 T 13-10-2018 IPR035919 EAL domain superfamily CS348_10285 fd661a28dd88bd9fa30bd673a87e300c 319 SUPERFAMILY SSF53807 32 317 9.81E-76 T 13-10-2018 CS348_10285 fd661a28dd88bd9fa30bd673a87e300c 319 Gene3D G3DSA:3.40.50.1980 32 205 1.8E-64 T 13-10-2018 CS348_10285 fd661a28dd88bd9fa30bd673a87e300c 319 Pfam PF01297 Zinc-uptake complex component A periplasmic 33 314 2.2E-58 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CS348_10285 fd661a28dd88bd9fa30bd673a87e300c 319 Gene3D G3DSA:3.40.50.1980 206 319 1.4E-44 T 13-10-2018 CS348_06620 dee34e33778a07e63249f7791b67f5b0 159 PIRSF PIRSF004923 1 151 3.4E-42 T 13-10-2018 IPR026268 Protein RseC CS348_06620 dee34e33778a07e63249f7791b67f5b0 159 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 3.6E-33 T 13-10-2018 CS348_09575 14e4a37acfaf4e707a3e7384221a0ae6 181 Gene3D G3DSA:3.40.50.300 2 181 1.5E-74 T 13-10-2018 CS348_09575 14e4a37acfaf4e707a3e7384221a0ae6 181 PIRSF PIRSF006135 1 181 2.1E-64 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 CS348_09575 14e4a37acfaf4e707a3e7384221a0ae6 181 SUPERFAMILY SSF52540 2 181 3.49E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09575 14e4a37acfaf4e707a3e7384221a0ae6 181 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 3 180 3.7E-62 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 CS348_03960 636dde96300fce1e7f1bb039a4f7edbc 245 TIGRFAM TIGR03759 conj_TIGR03759: integrating conjugative element protein, PFL_4693 family 50 241 1.4E-83 T 13-10-2018 IPR022293 Integrating conjugative element protein, PFL4693 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 3.3E-159 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 1.5E-222 T 13-10-2018 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 4.4E-29 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 Gene3D G3DSA:3.40.50.12160 3 135 7.5E-32 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 Gene3D G3DSA:3.80.30.20 145 378 1.8E-83 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 SUPERFAMILY SSF102114 127 373 3.4E-64 T 13-10-2018 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 Pfam PF04055 Radical SAM superfamily 151 325 3.3E-27 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 75.457 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 SMART SM00729 147 367 1.9E-64 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_16905 a4d4c7885c4388d84406baeb7272f3f1 474 Pfam PF01938 TRAM domain 378 440 5.0E-21 T 13-10-2018 IPR002792 TRAM domain CS348_14930 a24f48b0de189a45b21e2a060430770d 101 Hamap MF_01155 Chaperone modulatory protein CbpM [cbpM]. 1 97 27.088 T 13-10-2018 IPR022835 Chaperone modulatory protein CbpM CS348_14930 a24f48b0de189a45b21e2a060430770d 101 Pfam PF13591 MerR HTH family regulatory protein 8 90 1.3E-24 T 13-10-2018 CS348_14930 a24f48b0de189a45b21e2a060430770d 101 Gene3D G3DSA:1.10.1660.10 1 101 6.8E-32 T 13-10-2018 CS348_19760 6798500127eec4702d7fea1c55e36932 314 Gene3D G3DSA:3.40.190.10 105 307 8.1E-38 T 13-10-2018 CS348_19760 6798500127eec4702d7fea1c55e36932 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 81 2.7E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19760 6798500127eec4702d7fea1c55e36932 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19760 6798500127eec4702d7fea1c55e36932 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 1.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19760 6798500127eec4702d7fea1c55e36932 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 1.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_19760 6798500127eec4702d7fea1c55e36932 314 Gene3D G3DSA:3.40.190.10 186 283 8.1E-38 T 13-10-2018 CS348_19760 6798500127eec4702d7fea1c55e36932 314 Pfam PF03466 LysR substrate binding domain 136 312 1.1E-14 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_19760 6798500127eec4702d7fea1c55e36932 314 Gene3D G3DSA:1.10.10.10 14 102 6.7E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_19760 6798500127eec4702d7fea1c55e36932 314 SUPERFAMILY SSF53850 105 311 1.65E-38 T 13-10-2018 CS348_19760 6798500127eec4702d7fea1c55e36932 314 SUPERFAMILY SSF46785 19 98 1.45E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12315 ce028c478a63b4122bd58743346156aa 518 Gene3D G3DSA:3.40.50.1820 73 390 2.7E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_12315 ce028c478a63b4122bd58743346156aa 518 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 63 433 4.7E-137 T 13-10-2018 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type CS348_12315 ce028c478a63b4122bd58743346156aa 518 PIRSF PIRSF014728 11 510 4.7E-259 T 13-10-2018 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type CS348_12315 ce028c478a63b4122bd58743346156aa 518 SUPERFAMILY SSF53474 114 390 4.9E-13 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_01940 f20d4a46352997a5a3400e9bf5ef566d 128 Gene3D G3DSA:3.40.1260.10 1 128 3.9E-58 T 13-10-2018 IPR027396 DsrEFH-like CS348_01940 f20d4a46352997a5a3400e9bf5ef566d 128 Pfam PF02635 DsrE/DsrF-like family 1 128 1.8E-28 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CS348_01940 f20d4a46352997a5a3400e9bf5ef566d 128 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 128 5.8E-54 T 13-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 CS348_01940 f20d4a46352997a5a3400e9bf5ef566d 128 SUPERFAMILY SSF75169 1 128 1.04E-37 T 13-10-2018 IPR027396 DsrEFH-like CS348_01940 f20d4a46352997a5a3400e9bf5ef566d 128 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 1 128 40.209 T 13-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 CS348_11855 af6213f3b5e4e436615d3920db396b74 447 Gene3D G3DSA:3.10.180.80 1 438 2.2E-207 T 13-10-2018 CS348_11855 af6213f3b5e4e436615d3920db396b74 447 SMART SM01150 11 401 3.6E-228 T 13-10-2018 IPR009770 Domain of unknown function DUF1338 CS348_11855 af6213f3b5e4e436615d3920db396b74 447 Pfam PF07063 Domain of unknown function (DUF1338) 9 401 1.2E-120 T 13-10-2018 IPR009770 Domain of unknown function DUF1338 CS348_08835 d2de95ede3b980b8f5a4baa89c834f91 243 Gene3D G3DSA:1.10.3720.10 43 241 9.2E-26 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08835 d2de95ede3b980b8f5a4baa89c834f91 243 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 238 3.6E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_08835 d2de95ede3b980b8f5a4baa89c834f91 243 SUPERFAMILY SSF161098 46 233 4.45E-31 T 13-10-2018 IPR035906 MetI-like superfamily CS348_22695 23b5922c0055bbe046056d357e25fb58 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 4.3E-130 T 13-10-2018 IPR033752 MetA family CS348_22695 23b5922c0055bbe046056d357e25fb58 309 SUPERFAMILY SSF52317 17 297 3.15E-100 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_22695 23b5922c0055bbe046056d357e25fb58 309 Gene3D G3DSA:3.40.50.880 1 301 5.4E-120 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_22695 23b5922c0055bbe046056d357e25fb58 309 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 41.164 T 13-10-2018 IPR033752 MetA family CS348_22695 23b5922c0055bbe046056d357e25fb58 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 6.0E-150 T 13-10-2018 CS348_22695 23b5922c0055bbe046056d357e25fb58 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 1.3E-164 T 13-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 CS348_22695 23b5922c0055bbe046056d357e25fb58 309 PIRSF PIRSF000450 1 308 3.9E-145 T 13-10-2018 IPR033752 MetA family CS348_25630 0796ea6d99fef234850c8a249a6bc5f7 440 SUPERFAMILY SSF56954 11 437 1.16E-84 T 13-10-2018 CS348_25630 0796ea6d99fef234850c8a249a6bc5f7 440 Gene3D G3DSA:1.20.1600.10 9 439 1.7E-94 T 13-10-2018 CS348_25630 0796ea6d99fef234850c8a249a6bc5f7 440 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 10 436 3.3E-103 T 13-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 CS348_25630 0796ea6d99fef234850c8a249a6bc5f7 440 Pfam PF02321 Outer membrane efflux protein 235 416 6.6E-32 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_25630 0796ea6d99fef234850c8a249a6bc5f7 440 Pfam PF02321 Outer membrane efflux protein 12 204 9.0E-28 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_16910 6aec14c665955c7c913da689a11ba028 361 Pfam PF02562 PhoH-like protein 131 334 1.5E-95 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 CS348_16910 6aec14c665955c7c913da689a11ba028 361 SUPERFAMILY SSF52540 130 331 3.49E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16910 6aec14c665955c7c913da689a11ba028 361 Gene3D G3DSA:3.40.50.300 128 334 6.4E-76 T 13-10-2018 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 Gene3D G3DSA:3.40.50.620 1 305 6.5E-136 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 SUPERFAMILY SSF52374 1 313 4.83E-105 T 13-10-2018 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 39.769 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 SMART SM00840 341 402 1.7E-27 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 Gene3D G3DSA:1.20.120.640 306 461 1.2E-59 T 13-10-2018 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 SUPERFAMILY SSF47323 316 460 9.68E-45 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 3.7E-145 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 8.5E-199 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 2.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 2.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 2.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 2.9E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CS348_17760 2f00dc96c56b12a4c751246e0d0f3782 461 Pfam PF09190 DALR domain 341 402 7.5E-24 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CS348_06915 2d61fd4077a49cc12c8cf7b8fa856d37 269 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 266 1.1E-26 T 13-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 CS348_05985 45870494002d99357634c95d958f92e5 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 2.7E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05985 45870494002d99357634c95d958f92e5 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 2.7E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05985 45870494002d99357634c95d958f92e5 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 2.7E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05985 45870494002d99357634c95d958f92e5 176 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 2.7E-24 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05985 45870494002d99357634c95d958f92e5 176 Gene3D G3DSA:1.10.10.10 10 165 1.9E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05985 45870494002d99357634c95d958f92e5 176 Pfam PF01047 MarR family 53 112 1.4E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05985 45870494002d99357634c95d958f92e5 176 SMART SM00347 46 148 2.2E-33 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CS348_05985 45870494002d99357634c95d958f92e5 176 SUPERFAMILY SSF46785 22 166 2.84E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05985 45870494002d99357634c95d958f92e5 176 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 Gene3D G3DSA:1.10.10.60 267 326 5.3E-5 T 13-10-2018 CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 SUPERFAMILY SSF52540 9 248 2.3E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 Gene3D G3DSA:3.40.50.300 1 179 1.2E-60 T 13-10-2018 CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 SUPERFAMILY SSF46689 222 326 1.08E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 SMART SM00382 28 180 2.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 Pfam PF00158 Sigma-54 interaction domain 9 170 1.4E-61 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 324 8.4E-160 T 13-10-2018 IPR014317 Transcription activator PspF CS348_11485 3cb87fcf4db4bc7a5a2fcf123d8bf2d4 326 Gene3D G3DSA:1.10.8.60 180 263 6.8E-29 T 13-10-2018 CS348_16190 1359572dceb245ced68f6ece1ce5738a 240 SUPERFAMILY SSF52540 1 235 9.66E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16190 1359572dceb245ced68f6ece1ce5738a 240 Gene3D G3DSA:3.40.50.300 1 240 9.7E-82 T 13-10-2018 CS348_16190 1359572dceb245ced68f6ece1ce5738a 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_16190 1359572dceb245ced68f6ece1ce5738a 240 SMART SM00382 26 213 2.3E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16190 1359572dceb245ced68f6ece1ce5738a 240 PIRSF PIRSF039085 1 240 1.0E-110 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CS348_16190 1359572dceb245ced68f6ece1ce5738a 240 Pfam PF00005 ABC transporter 17 165 1.8E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_17960 6ce2e423a9ece102b2bd62d90c1d1c9e 171 Gene3D G3DSA:1.20.1270.340 1 94 3.3E-35 T 13-10-2018 IPR038338 PriB/PriC superfamily CS348_17960 6ce2e423a9ece102b2bd62d90c1d1c9e 171 Pfam PF07445 Primosomal replication protein priC 4 168 6.4E-46 T 13-10-2018 IPR010890 Primosomal replication PriB/PriC CS348_13730 da7287e418c3fc51da0be6f950a02c24 252 SUPERFAMILY SSF88713 1 252 4.22E-75 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CS348_13730 da7287e418c3fc51da0be6f950a02c24 252 Gene3D G3DSA:3.20.20.370 1 252 1.6E-66 T 13-10-2018 CS348_13730 da7287e418c3fc51da0be6f950a02c24 252 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 249 39.264 T 13-10-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 CS348_13730 da7287e418c3fc51da0be6f950a02c24 252 Pfam PF04794 YdjC-like protein 5 240 1.2E-58 T 13-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like CS348_18290 ef7ac68ec8d06b0ca67e47fe8bee2cfd 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 3.7E-78 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CS348_18290 ef7ac68ec8d06b0ca67e47fe8bee2cfd 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 89.234 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CS348_18290 ef7ac68ec8d06b0ca67e47fe8bee2cfd 149 Pfam PF03477 ATP cone domain 50 136 4.4E-15 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CS348_00865 be164eacf6fd3132d9ddcb78293156a1 154 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 8.7E-61 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family CS348_00865 be164eacf6fd3132d9ddcb78293156a1 154 Pfam PF04074 Domain of unknown function (DUF386) 1 149 5.0E-43 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family CS348_00865 be164eacf6fd3132d9ddcb78293156a1 154 SUPERFAMILY SSF51197 1 154 6.59E-45 T 13-10-2018 CS348_00865 be164eacf6fd3132d9ddcb78293156a1 154 Gene3D G3DSA:2.60.120.370 1 154 4.1E-45 T 13-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 450 2.0E-172 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 Pfam PF02163 Peptidase family M50 10 438 1.6E-87 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 Gene3D G3DSA:2.30.42.10 127 220 3.9E-37 T 13-10-2018 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 SUPERFAMILY SSF50156 88 185 3.15E-12 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 Gene3D G3DSA:2.30.42.10 221 309 6.7E-24 T 13-10-2018 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 209 276 4.0E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 SMART SM00228 115 186 0.032 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 SMART SM00228 211 280 7.3E-12 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CS348_19180 930f7a4cffcaba1393a1a902d89e84b7 450 SUPERFAMILY SSF50156 195 290 2.63E-18 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CS348_25565 fbd00f9f6d422ee97c1ae2db19685b09 101 Pfam PF01845 CcdB protein 2 100 9.0E-29 T 13-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 CS348_25565 fbd00f9f6d422ee97c1ae2db19685b09 101 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 9 100 6.0E-47 T 13-10-2018 IPR002712 Toxin CcdB GO:0006276|GO:0008657 CS348_25565 fbd00f9f6d422ee97c1ae2db19685b09 101 SUPERFAMILY SSF50118 1 101 5.23E-33 T 13-10-2018 CS348_25565 fbd00f9f6d422ee97c1ae2db19685b09 101 Gene3D G3DSA:2.30.30.110 1 101 5.3E-40 T 13-10-2018 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CS348_02865 988f94459e2432d96e697d4921cc03dd 174 SUPERFAMILY SSF55718 42 137 6.36E-22 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily CS348_02865 988f94459e2432d96e697d4921cc03dd 174 Pfam PF02036 SCP-2 sterol transfer family 43 133 3.4E-18 T 13-10-2018 IPR003033 SCP2 sterol-binding domain CS348_02865 988f94459e2432d96e697d4921cc03dd 174 PIRSF PIRSF025550 1 173 1.5E-81 T 13-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT CS348_02865 988f94459e2432d96e697d4921cc03dd 174 Gene3D G3DSA:3.30.1050.10 54 139 6.4E-9 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 185.769 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 SUPERFAMILY SSF53067 4 199 3.63E-62 T 13-10-2018 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 1.3E-186 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PIRSF PIRSF000722 2 400 1.4E-142 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 Gene3D G3DSA:3.30.420.40 199 400 5.3E-88 T 13-10-2018 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PRINTS PR00471 Acetate kinase family signature 6 17 2.3E-48 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PRINTS PR00471 Acetate kinase family signature 325 341 2.3E-48 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PRINTS PR00471 Acetate kinase family signature 302 315 2.3E-48 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PRINTS PR00471 Acetate kinase family signature 176 189 2.3E-48 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PRINTS PR00471 Acetate kinase family signature 206 227 2.3E-48 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 PRINTS PR00471 Acetate kinase family signature 380 392 2.3E-48 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 Gene3D G3DSA:3.30.420.40 3 198 8.2E-78 T 13-10-2018 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 Pfam PF00871 Acetokinase family 6 393 1.2E-176 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CS348_07960 f8eb2f19760fb9550349e4544d5dbc49 400 SUPERFAMILY SSF53067 160 398 1.48E-84 T 13-10-2018 CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 Gene3D G3DSA:1.10.1200.120 3 134 3.3E-42 T 13-10-2018 IPR036019 Gated mechanosensitive channel CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 3.6E-14 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 3.6E-14 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 3.6E-14 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 SUPERFAMILY SSF81330 12 127 1.57E-35 T 13-10-2018 IPR036019 Gated mechanosensitive channel CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 5.1E-59 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 13-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 3.2E-45 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CS348_02160 7057d8f88556542c8f2e165eac02c1ed 137 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 132 24.423 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CS348_11015 0580564a51b13f65bafb3403d5da2a19 511 Gene3D G3DSA:3.30.70.20 1 302 5.7E-101 T 13-10-2018 CS348_11015 0580564a51b13f65bafb3403d5da2a19 511 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 492 0.0 T 13-10-2018 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_11015 0580564a51b13f65bafb3403d5da2a19 511 Pfam PF13247 4Fe-4S dicluster domain 175 271 2.5E-37 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_11015 0580564a51b13f65bafb3403d5da2a19 511 Gene3D G3DSA:1.10.3650.10 358 434 1.6E-34 T 13-10-2018 IPR038262 Nitrate reductase beta, C-terminal domain superfamily KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_11015 0580564a51b13f65bafb3403d5da2a19 511 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 436 2.6E-30 T 13-10-2018 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.5.1|MetaCyc: PWY-6748 CS348_11015 0580564a51b13f65bafb3403d5da2a19 511 SUPERFAMILY SSF54862 1 504 3.24E-184 T 13-10-2018 CS348_21320 32d1226125bcacd9c979af5c1e5ca225 148 Pfam PF01527 Transposase 3 47 1.1E-8 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CS348_21320 32d1226125bcacd9c979af5c1e5ca225 148 SUPERFAMILY SSF46689 1 52 2.42E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_03775 be08d37ba6e2ef6bde2c2ce9145705f5 190 Pfam PF11198 Protein of unknown function (DUF2857) 10 181 1.5E-61 T 13-10-2018 IPR021364 Protein of unknown function DUF2857 CS348_08090 19e0f1ab64b32f6a9be15937b1325168 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 2.7E-30 T 13-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 CS348_15055 89e39beec1fa3cac9e2835bfc32c457a 291 SUPERFAMILY SSF141571 155 275 2.09E-26 T 13-10-2018 CS348_15055 89e39beec1fa3cac9e2835bfc32c457a 291 Pfam PF00805 Pentapeptide repeats (8 copies) 160 196 9.4E-6 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_15055 89e39beec1fa3cac9e2835bfc32c457a 291 Pfam PF00805 Pentapeptide repeats (8 copies) 199 238 2.1E-11 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_15055 89e39beec1fa3cac9e2835bfc32c457a 291 Gene3D G3DSA:3.30.2450.10 19 138 8.2E-41 T 13-10-2018 CS348_15055 89e39beec1fa3cac9e2835bfc32c457a 291 Gene3D G3DSA:2.160.20.80 152 281 2.4E-28 T 13-10-2018 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Gene3D G3DSA:3.40.50.300 217 382 8.2E-103 T 13-10-2018 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.103 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Gene3D G3DSA:3.30.1360.120 1 121 5.8E-38 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 5.6E-34 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Pfam PF01926 50S ribosome-binding GTPase 218 315 1.3E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Gene3D G3DSA:1.20.120.430 122 454 8.2E-103 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 SUPERFAMILY SSF116878 121 454 6.54E-51 T 13-10-2018 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 SUPERFAMILY SSF52540 72 372 2.36E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 Pfam PF12631 MnmE helical domain 123 451 3.2E-60 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 4.9E-99 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CS348_24590 ab6eb07f2098a7fc01988b142d27fdcb 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 370 2.7E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CS348_09020 474f61f334e0f9539975d9006adeded0 413 SUPERFAMILY SSF111369 78 312 5.75E-53 T 13-10-2018 CS348_09020 474f61f334e0f9539975d9006adeded0 413 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 61 389 2.1E-76 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_09020 474f61f334e0f9539975d9006adeded0 413 Pfam PF13437 HlyD family secretion protein 197 301 1.8E-6 T 13-10-2018 CS348_09020 474f61f334e0f9539975d9006adeded0 413 Gene3D G3DSA:2.40.50.100 85 229 7.3E-64 T 13-10-2018 CS348_09020 474f61f334e0f9539975d9006adeded0 413 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 1 411 53.003 T 13-10-2018 IPR022824 Multidrug resistance protein MdtA CS348_09020 474f61f334e0f9539975d9006adeded0 413 Gene3D G3DSA:1.10.287.470 120 193 7.3E-64 T 13-10-2018 CS348_09020 474f61f334e0f9539975d9006adeded0 413 Gene3D G3DSA:2.40.30.170 79 297 7.3E-64 T 13-10-2018 CS348_09020 474f61f334e0f9539975d9006adeded0 413 Pfam PF13533 Biotin-lipoyl like 86 134 2.7E-14 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CS348_09020 474f61f334e0f9539975d9006adeded0 413 Gene3D G3DSA:2.40.420.20 298 391 3.4E-24 T 13-10-2018 CS348_03265 ef6d39a22c401aed4cfb51db68a2c6fa 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 43.002 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_03265 ef6d39a22c401aed4cfb51db68a2c6fa 217 Gene3D G3DSA:3.90.870.10 1 217 8.9E-94 T 13-10-2018 CS348_03265 ef6d39a22c401aed4cfb51db68a2c6fa 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 19 208 4.4E-82 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_03265 ef6d39a22c401aed4cfb51db68a2c6fa 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 209 2.6E-84 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CS348_03265 ef6d39a22c401aed4cfb51db68a2c6fa 217 SUPERFAMILY SSF55821 7 213 7.1E-85 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 Pfam PF00664 ABC transporter transmembrane region 172 434 8.0E-27 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 SMART SM00382 510 703 3.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 SUPERFAMILY SSF52540 473 703 2.42E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 Gene3D G3DSA:3.40.50.300 476 726 4.4E-65 T 13-10-2018 CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 Pfam PF00005 ABC transporter 504 650 3.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 Gene3D G3DSA:3.90.70.10 16 135 8.1E-14 T 13-10-2018 CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 SUPERFAMILY SSF90123 155 466 5.1E-51 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 19 711 1.0E-230 T 13-10-2018 IPR017750 ATPase, type I secretion system CS348_06345 4510847b0fca5875ebc6d9c2b656d50f 726 Gene3D G3DSA:1.20.1560.10 160 468 1.0E-54 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 Gene3D G3DSA:1.10.10.60 1 62 7.1E-30 T 13-10-2018 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 Gene3D G3DSA:1.10.357.10 63 224 2.9E-68 T 13-10-2018 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 Pfam PF09209 Domain of unknown function (DUF1956) 96 218 9.6E-36 T 13-10-2018 IPR015292 Transcription regulator YbiH, C-terminal CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 SUPERFAMILY SSF48498 90 219 2.05E-38 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 62 4.8E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 SUPERFAMILY SSF46689 4 81 2.31E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 7.9E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 7.9E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_16230 d06324af54fd86525d0cfd57a9c09750 224 ProSitePatterns PS01081 TetR-type HTH domain signature. 29 58 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CS348_21420 1805127417b7027fab94d27f5793c95d 183 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 16 180 23.959 T 13-10-2018 IPR006839 Ribosome-associated, YjgA CS348_21420 1805127417b7027fab94d27f5793c95d 183 PIRSF PIRSF016183 10 183 2.7E-71 T 13-10-2018 IPR006839 Ribosome-associated, YjgA CS348_21420 1805127417b7027fab94d27f5793c95d 183 SUPERFAMILY SSF158710 37 179 4.58E-51 T 13-10-2018 IPR023153 PSPTO4464-like domain superfamily CS348_21420 1805127417b7027fab94d27f5793c95d 183 Gene3D G3DSA:1.10.60.30 113 183 5.0E-29 T 13-10-2018 CS348_21420 1805127417b7027fab94d27f5793c95d 183 Gene3D G3DSA:1.10.60.30 36 110 6.6E-20 T 13-10-2018 CS348_21420 1805127417b7027fab94d27f5793c95d 183 Pfam PF04751 Protein of unknown function (DUF615) 26 176 2.2E-55 T 13-10-2018 IPR006839 Ribosome-associated, YjgA CS348_07425 f1b4b277de1a700fc5b277f494a160ed 253 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 9 249 28.976 T 13-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 CS348_07425 f1b4b277de1a700fc5b277f494a160ed 253 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 15 231 9.2E-42 T 13-10-2018 CS348_01005 a063a688442967723c188605ae23c830 324 SUPERFAMILY SSF51735 100 288 7.62E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_01005 a063a688442967723c188605ae23c830 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 319 2.6E-28 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CS348_01005 a063a688442967723c188605ae23c830 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 4.6E-62 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CS348_01005 a063a688442967723c188605ae23c830 324 Gene3D G3DSA:3.40.50.720 5 312 1.1E-106 T 13-10-2018 CS348_01005 a063a688442967723c188605ae23c830 324 Gene3D G3DSA:3.40.50.720 97 287 1.1E-106 T 13-10-2018 CS348_01005 a063a688442967723c188605ae23c830 324 SUPERFAMILY SSF52283 1 133 9.83E-27 T 13-10-2018 CS348_01005 a063a688442967723c188605ae23c830 324 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_01005 a063a688442967723c188605ae23c830 324 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 1 324 68.74 T 13-10-2018 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 CS348_01005 a063a688442967723c188605ae23c830 324 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 Pfam PF08220 DeoR-like helix-turn-helix domain 5 60 3.8E-19 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 SUPERFAMILY SSF100950 76 233 2.83E-27 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 SUPERFAMILY SSF46785 4 59 1.37E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 23 37 2.0E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 37 55 2.0E-8 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 ProSitePatterns PS00894 DeoR-type HTH domain signature. 5 39 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 Gene3D G3DSA:1.10.10.10 1 58 2.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 SMART SM00420 5 57 3.4E-21 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 Pfam PF00455 DeoR C terminal sensor domain 76 232 3.0E-43 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_05105 82f831be94046a9775ee7ee5a535ef33 236 SMART SM01134 74 234 1.7E-52 T 13-10-2018 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 8 23 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 242 254 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 423 440 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 357 376 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 128 145 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 180 198 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 279 297 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 207 222 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 518 534 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 PRINTS PR01734 Type III secretion system outer membrane B protein family signature 488 504 3.9E-54 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_15040 8848c821dcb43768a5e96b4818989497 561 Gene3D G3DSA:1.20.58.450 58 181 8.1E-59 T 13-10-2018 CS348_15040 8848c821dcb43768a5e96b4818989497 561 Pfam PF05925 Enterobacterial virulence protein IpgD 1 559 0.0 T 13-10-2018 IPR008108 Phosphatase IpgD/SopB GO:0009405|GO:0016791 CS348_10405 2df18cac494a406665278eff0d8153c7 76 Gene3D G3DSA:1.10.530.70 2 76 2.2E-7 T 13-10-2018 CS348_10405 2df18cac494a406665278eff0d8153c7 76 SUPERFAMILY SSF53955 14 76 5.06E-12 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_00890 58bc3ec5b0af608426362d2d7b65d825 675 Gene3D G3DSA:3.20.20.80 175 412 7.6E-52 T 13-10-2018 CS348_00890 58bc3ec5b0af608426362d2d7b65d825 675 PIRSF PIRSF036917 1 675 0.0 T 13-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 CS348_00890 58bc3ec5b0af608426362d2d7b65d825 675 SUPERFAMILY SSF51445 180 642 2.48E-71 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_00890 58bc3ec5b0af608426362d2d7b65d825 675 Pfam PF00128 Alpha amylase, catalytic domain 225 594 7.8E-35 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_00890 58bc3ec5b0af608426362d2d7b65d825 675 SMART SM00642 192 636 3.9E-79 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_00890 58bc3ec5b0af608426362d2d7b65d825 675 Gene3D G3DSA:3.20.20.80 431 644 3.0E-28 T 13-10-2018 CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 6.8E-6 T 13-10-2018 CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 7.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 7.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 7.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 7.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 7.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 5.3E-102 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 Gene3D G3DSA:3.40.50.720 1 244 3.0E-87 T 13-10-2018 CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 SUPERFAMILY SSF51735 4 243 5.86E-87 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.2E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_14465 566da2aaeeeda3dd6bbdc1436cf7b44b 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 8.2E-68 T 13-10-2018 CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 SUPERFAMILY SSF49503 33 166 2.41E-30 T 13-10-2018 IPR008972 Cupredoxin CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 Pfam PF07731 Multicopper oxidase 424 536 7.0E-24 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 Gene3D G3DSA:2.60.40.420 29 174 1.5E-42 T 13-10-2018 IPR008972 Cupredoxin CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 Gene3D G3DSA:2.60.40.420 175 326 3.0E-47 T 13-10-2018 IPR008972 Cupredoxin CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 Pfam PF00394 Multicopper oxidase 229 295 1.3E-4 T 13-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 SUPERFAMILY SSF49503 172 303 2.28E-30 T 13-10-2018 IPR008972 Cupredoxin CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 SUPERFAMILY SSF49503 354 536 2.28E-29 T 13-10-2018 IPR008972 Cupredoxin CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 Pfam PF07732 Multicopper oxidase 53 165 6.9E-29 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 ProSitePatterns PS00080 Multicopper oxidases signature 2. 519 530 - T 13-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 CS348_19480 ed6acad51ed71f8e273d61eb3b8fda88 536 Gene3D G3DSA:2.60.40.420 345 536 2.6E-50 T 13-10-2018 IPR008972 Cupredoxin CS348_10865 21126daa33c16133a7a099c76c524ef0 282 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 164 282 3.0E-63 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_10865 21126daa33c16133a7a099c76c524ef0 282 ProDom PD005668 HYDROGENASE HUPH HYDROGENASE-1 EXPRESSION/FORMATION OPERON PROTEIN C-TERMINAL EXPRESSION HYAF HOXQ 49 144 9.0E-49 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_10865 21126daa33c16133a7a099c76c524ef0 282 Gene3D G3DSA:3.30.1370.140 44 142 1.5E-17 T 13-10-2018 IPR038527 HupH, C-terminal domain superfamily CS348_10865 21126daa33c16133a7a099c76c524ef0 282 Gene3D G3DSA:3.30.1370.140 164 258 3.1E-19 T 13-10-2018 IPR038527 HupH, C-terminal domain superfamily CS348_10865 21126daa33c16133a7a099c76c524ef0 282 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 50 142 6.6E-10 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_10865 21126daa33c16133a7a099c76c524ef0 282 Pfam PF04809 HupH hydrogenase expression protein, C-terminal conserved region 164 279 1.2E-34 T 13-10-2018 IPR006894 HupH hydrogenase expression protein, C-terminal CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 Gene3D G3DSA:3.30.479.30 124 257 5.4E-20 T 13-10-2018 CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 SUPERFAMILY SSF117892 128 259 4.97E-21 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 Pfam PF01145 SPFH domain / Band 7 family 99 270 7.8E-31 T 13-10-2018 IPR001107 Band 7 domain CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 PRINTS PR00721 Stomatin signature 102 124 9.2E-7 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 PRINTS PR00721 Stomatin signature 184 201 9.2E-7 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 PRINTS PR00721 Stomatin signature 149 170 9.2E-7 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 Pfam PF12221 Bacterial membrane protein N terminal 1 58 4.9E-15 T 13-10-2018 IPR020980 Menbrane protein HflK, N-terminal CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 SMART SM00244 95 255 1.4E-43 T 13-10-2018 IPR001107 Band 7 domain CS348_21805 de7b0bb2a3119152b6c45a7b1344adac 419 TIGRFAM TIGR01933 hflK: HflK protein 97 356 1.7E-125 T 13-10-2018 IPR010201 HflK GO:0016021 CS348_19415 1ef0f4eaddd52102f44e98814adcc115 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 3.5E-102 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CS348_19415 1ef0f4eaddd52102f44e98814adcc115 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 2 280 2.3E-120 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CS348_19415 1ef0f4eaddd52102f44e98814adcc115 284 Gene3D G3DSA:3.30.1300.10 180 283 2.2E-33 T 13-10-2018 CS348_19415 1ef0f4eaddd52102f44e98814adcc115 284 SUPERFAMILY SSF52374 3 280 5.04E-103 T 13-10-2018 CS348_19415 1ef0f4eaddd52102f44e98814adcc115 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.452 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CS348_19415 1ef0f4eaddd52102f44e98814adcc115 284 Gene3D G3DSA:3.40.50.620 1 179 3.9E-80 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 Gene3D G3DSA:3.20.20.80 232 615 1.8E-92 T 13-10-2018 CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 Gene3D G3DSA:2.60.40.1180 616 664 4.6E-9 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 Pfam PF01055 Glycosyl hydrolases family 31 230 664 1.7E-73 T 13-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 SUPERFAMILY SSF74650 63 225 1.32E-20 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 Gene3D G3DSA:2.60.40.1760 43 231 1.5E-17 T 13-10-2018 CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 SUPERFAMILY SSF51011 585 663 1.01E-20 T 13-10-2018 CS348_23700 25ac3ad167ebc61f4c3f7eaf76aebac5 678 SUPERFAMILY SSF51445 236 583 7.26E-52 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 SUPERFAMILY SSF116726 148 226 1.26E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 2.5E-36 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 2.5E-36 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 2.5E-36 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 2.5E-36 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 2.5E-36 T 13-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 SUPERFAMILY SSF51735 232 376 2.72E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Gene3D G3DSA:3.30.70.1450 140 232 8.0E-21 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Pfam PF02080 TrkA-C domain 157 225 1.6E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Pfam PF02080 TrkA-C domain 390 451 1.3E-9 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Gene3D G3DSA:3.30.70.1450 367 458 7.6E-27 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 SUPERFAMILY SSF51735 1 152 3.29E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 SUPERFAMILY SSF116726 390 450 1.57E-6 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Pfam PF02254 TrkA-N domain 235 350 2.7E-26 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Pfam PF02254 TrkA-N domain 3 111 8.6E-30 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Gene3D G3DSA:3.40.50.720 2 139 3.7E-50 T 13-10-2018 CS348_02165 49067df81bd69083a7fc3d2a2482e35f 458 Gene3D G3DSA:3.40.50.720 233 366 1.4E-37 T 13-10-2018 CS348_22570 ec7073fd103a1c48ed0647d1d52f4966 136 Pfam PF06146 Phosphate-starvation-inducible E 62 123 2.0E-16 T 13-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like CS348_22570 ec7073fd103a1c48ed0647d1d52f4966 136 PIRSF PIRSF029598 1 136 3.3E-50 T 13-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 CS348_22570 ec7073fd103a1c48ed0647d1d52f4966 136 Hamap MF_01048 Protein PsiE [psiE]. 3 136 25.471 T 13-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 CS348_14420 f94f8a3d6d0e32ff5e7cba84265fc765 269 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 262 5.5E-112 T 13-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 CS348_14420 f94f8a3d6d0e32ff5e7cba84265fc765 269 Gene3D G3DSA:3.20.10.10 121 265 1.5E-52 T 13-10-2018 CS348_14420 f94f8a3d6d0e32ff5e7cba84265fc765 269 Pfam PF01063 Amino-transferase class IV 24 246 8.3E-44 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 CS348_14420 f94f8a3d6d0e32ff5e7cba84265fc765 269 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 13-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 CS348_14420 f94f8a3d6d0e32ff5e7cba84265fc765 269 Gene3D G3DSA:3.30.470.10 1 107 2.0E-29 T 13-10-2018 CS348_14420 f94f8a3d6d0e32ff5e7cba84265fc765 269 SUPERFAMILY SSF56752 1 256 8.24E-67 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 CS348_05675 7ae5cf0d22a2f1e268a53fcac2f59f6a 199 TIGRFAM TIGR02555 OrgA_MxiK: type III secretion apparatus protein OrgA/MxiK 17 199 2.0E-71 T 13-10-2018 IPR013388 Type III secretion apparatus protein OrgA/MxiK GO:0009405 CS348_05675 7ae5cf0d22a2f1e268a53fcac2f59f6a 199 Pfam PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) 17 189 1.7E-64 T 13-10-2018 IPR013388 Type III secretion apparatus protein OrgA/MxiK GO:0009405 CS348_18100 c53adef3ff8e8eceb3f1afeff6bbf222 124 Pfam PF12836 Helix-hairpin-helix motif 61 120 8.3E-20 T 13-10-2018 CS348_18100 c53adef3ff8e8eceb3f1afeff6bbf222 124 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 56 124 3.5E-35 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain CS348_18100 c53adef3ff8e8eceb3f1afeff6bbf222 124 Gene3D G3DSA:1.10.150.280 52 124 9.9E-21 T 13-10-2018 CS348_18100 c53adef3ff8e8eceb3f1afeff6bbf222 124 SUPERFAMILY SSF47781 52 120 3.34E-24 T 13-10-2018 IPR010994 RuvA domain 2-like CS348_16325 e301c4ce9605570441a46f7507a2deac 302 Hamap MF_00973 Gluconeogenesis factor. 8 300 32.702 T 13-10-2018 IPR010119 Gluconeogenesis factor CS348_16325 e301c4ce9605570441a46f7507a2deac 302 Pfam PF01933 Uncharacterised protein family UPF0052 12 289 2.9E-76 T 13-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CS348_16325 e301c4ce9605570441a46f7507a2deac 302 SUPERFAMILY SSF142338 11 295 1.19E-85 T 13-10-2018 CS348_16325 e301c4ce9605570441a46f7507a2deac 302 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 295 4.2E-101 T 13-10-2018 IPR010119 Gluconeogenesis factor CS348_16325 e301c4ce9605570441a46f7507a2deac 302 Gene3D G3DSA:3.40.50.12300 9 301 6.6E-81 T 13-10-2018 IPR038136 Gluconeogenesis factor superfamily CS348_05670 802eab8d460b7bd28942b802c3faf792 252 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 3 194 2.4E-71 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 Gene3D G3DSA:3.30.300.30 93 200 5.2E-43 T 13-10-2018 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 Pfam PF01514 Secretory protein of YscJ/FliF family 9 186 1.0E-16 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF CS348_05670 802eab8d460b7bd28942b802c3faf792 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 116 129 1.9E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 24 34 1.9E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 96 111 1.9E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 165 177 1.9E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 76 89 1.9E-16 T 13-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 CS348_05670 802eab8d460b7bd28942b802c3faf792 252 Gene3D G3DSA:3.30.70.1530 16 92 6.1E-38 T 13-10-2018 CS348_17300 2c2911fee394b3284e0fbc67e3669fc2 378 SUPERFAMILY SSF160355 64 329 1.24E-84 T 13-10-2018 CS348_17300 2c2911fee394b3284e0fbc67e3669fc2 378 Gene3D G3DSA:1.10.287.210 206 316 3.3E-97 T 13-10-2018 CS348_17300 2c2911fee394b3284e0fbc67e3669fc2 378 Pfam PF02706 Chain length determinant protein 26 122 2.0E-19 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 CS348_17300 2c2911fee394b3284e0fbc67e3669fc2 378 Gene3D G3DSA:3.30.1890.10 65 329 3.3E-97 T 13-10-2018 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 Pfam PF10150 Ribonuclease E/G family 124 393 1.3E-101 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 Gene3D G3DSA:2.40.50.140 31 127 3.7E-31 T 13-10-2018 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 Pfam PF00575 S1 RNA binding domain 38 109 1.5E-6 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 Gene3D G3DSA:3.40.1260.20 402 488 2.3E-6 T 13-10-2018 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 SMART SM00316 37 122 1.0E-9 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 5.5E-178 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 CS348_02375 e4a3ecd62f9cb70dbfa9f8e199465482 489 SUPERFAMILY SSF50249 39 128 2.44E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_00340 384af126ed78c899e7e629e3da406663 141 Gene3D G3DSA:3.40.50.510 8 139 6.7E-28 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_00340 384af126ed78c899e7e629e3da406663 141 SUPERFAMILY SSF53062 9 129 4.71E-24 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_00340 384af126ed78c899e7e629e3da406663 141 Pfam PF03610 PTS system fructose IIA component 10 119 2.5E-14 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CS348_05370 1e5e44ab92b6a00deaf98e568f5ee8ea 118 Pfam PF12084 Protein of unknown function (DUF3561) 12 118 7.8E-47 T 13-10-2018 IPR022721 Protein of unknown function DUF3561 CS348_05370 1e5e44ab92b6a00deaf98e568f5ee8ea 118 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 17 118 8.0E-43 T 13-10-2018 IPR022721 Protein of unknown function DUF3561 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 164 235 2.1E-19 T 13-10-2018 IPR006260 TonB/TolA, C-terminal CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 SUPERFAMILY SSF74653 156 225 6.67E-20 T 13-10-2018 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 Gene3D G3DSA:3.30.2420.10 154 242 1.4E-34 T 13-10-2018 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 Pfam PF16031 TonB N-terminal region 33 160 2.7E-32 T 13-10-2018 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 158 179 4.1E-39 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 198 215 4.1E-39 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 179 197 4.1E-39 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 91 101 4.1E-39 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_11165 295ee28c4d228c5e7e0a7fd6f174436c 242 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 163 232 2.7E-17 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 CS348_25130 8f0e98cf3ec48954ce77e3e44d3bb38e 499 Gene3D G3DSA:3.30.450.90 46 185 9.0E-9 T 13-10-2018 CS348_25130 8f0e98cf3ec48954ce77e3e44d3bb38e 499 Pfam PF00437 Type II/IV secretion system protein 89 363 3.6E-37 T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_25130 8f0e98cf3ec48954ce77e3e44d3bb38e 499 SUPERFAMILY SSF52540 76 477 1.82E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_25130 8f0e98cf3ec48954ce77e3e44d3bb38e 499 Gene3D G3DSA:3.40.50.300 192 475 2.3E-67 T 13-10-2018 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 275 288 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 65 83 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 325 340 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 252 270 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 24 40 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 46 62 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 86 96 1.6E-67 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 Gene3D G3DSA:3.40.50.2300 142 270 1.1E-124 T 13-10-2018 CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 Pfam PF13458 Periplasmic binding protein 24 342 7.4E-55 T 13-10-2018 IPR028081 Leucine-binding protein domain CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 SUPERFAMILY SSF53822 22 356 9.08E-87 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_01400 1ec980f119664623e440f1ac2fa4b590 365 Gene3D G3DSA:3.40.50.2300 25 341 1.1E-124 T 13-10-2018 CS348_11980 1cbff07fcce57fd3153adfc7df0d365d 256 Gene3D G3DSA:3.30.1380.10 30 253 2.4E-71 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CS348_11980 1cbff07fcce57fd3153adfc7df0d365d 256 Pfam PF01427 D-ala-D-ala dipeptidase 185 252 5.6E-14 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 CS348_11980 1cbff07fcce57fd3153adfc7df0d365d 256 Pfam PF01427 D-ala-D-ala dipeptidase 32 158 9.3E-22 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 CS348_11980 1cbff07fcce57fd3153adfc7df0d365d 256 PIRSF PIRSF026671 3 256 9.8E-75 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 CS348_11980 1cbff07fcce57fd3153adfc7df0d365d 256 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 32 251 32.322 T 13-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 CS348_11980 1cbff07fcce57fd3153adfc7df0d365d 256 SUPERFAMILY SSF55166 30 252 9.02E-64 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CS348_08845 ccecd9b64604446aba71df82566aacd8 243 SUPERFAMILY SSF46955 3 91 2.52E-19 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_08845 ccecd9b64604446aba71df82566aacd8 243 Pfam PF13411 MerR HTH family regulatory protein 4 72 5.0E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_08845 ccecd9b64604446aba71df82566aacd8 243 Gene3D G3DSA:1.10.1660.10 1 71 2.8E-25 T 13-10-2018 CS348_08845 ccecd9b64604446aba71df82566aacd8 243 ProSitePatterns PS00552 MerR-type HTH domain signature. 7 30 - T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_08845 ccecd9b64604446aba71df82566aacd8 243 SMART SM00422 4 73 1.1E-27 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CS348_05495 9eae7805971127870568df38a9e7b4eb 218 SUPERFAMILY SSF56300 9 216 7.44E-45 T 13-10-2018 CS348_05495 9eae7805971127870568df38a9e7b4eb 218 Pfam PF00149 Calcineurin-like phosphoesterase 16 163 2.4E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_05495 9eae7805971127870568df38a9e7b4eb 218 Gene3D G3DSA:3.60.21.10 4 218 1.9E-51 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_21050 7334299ffb776d971d4b6c011b583e23 390 Pfam PF01979 Amidohydrolase family 265 373 1.6E-8 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 Pfam PF07969 Amidohydrolase family 52 191 2.8E-7 T 13-10-2018 IPR013108 Amidohydrolase 3 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 9 388 7.0E-168 T 13-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 Gene3D G3DSA:3.20.20.140 64 342 1.5E-153 T 13-10-2018 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 PIRSF PIRSF001238 8 389 5.6E-153 T 13-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 SUPERFAMILY SSF51338 5 387 6.88E-25 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 Gene3D G3DSA:2.30.40.10 11 388 1.5E-153 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_21050 7334299ffb776d971d4b6c011b583e23 390 SUPERFAMILY SSF51556 63 346 1.62E-72 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_22750 015b1e019f5ba8d2afc30d8a2bdf9a0a 230 Pfam PF07356 Protein of unknown function (DUF1481) 42 226 5.4E-69 T 13-10-2018 IPR010858 Protein of unknown function DUF1481 CS348_22750 015b1e019f5ba8d2afc30d8a2bdf9a0a 230 PIRSF PIRSF006993 1 230 3.6E-117 T 13-10-2018 IPR016500 Uncharacterised conserved protein UCP006993 CS348_15520 c831279c011368c32b5ccefea6b7c535 299 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 135 296 5.0E-75 T 13-10-2018 IPR005642 Lysine exporter LysO CS348_15520 c831279c011368c32b5ccefea6b7c535 299 Pfam PF03956 Lysine exporter LysO 113 297 7.6E-58 T 13-10-2018 IPR005642 Lysine exporter LysO CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 371 389 1.0E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 126 148 1.0E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 252 276 1.0E-9 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 SUPERFAMILY SSF51971 125 347 1.29E-48 T 13-10-2018 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 7 112 1.7E-33 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 SUPERFAMILY SSF46548 8 135 3.66E-27 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 126 395 3.3E-24 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 Gene3D G3DSA:3.50.50.60 125 246 8.5E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 Gene3D G3DSA:3.50.50.60 255 412 1.1E-18 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 Gene3D G3DSA:1.10.1060.10 4 124 3.5E-38 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 127 146 8.9E-18 T 13-10-2018 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 361 383 8.9E-18 T 13-10-2018 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 338 354 8.9E-18 T 13-10-2018 CS348_08705 4cbc2056103cbadeb62737c4d8254c20 413 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 274 8.9E-18 T 13-10-2018 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.132 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 1.0E-40 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 SMART SM01387 8 88 6.6E-52 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 SUPERFAMILY SSF47060 3 89 5.3E-35 T 13-10-2018 IPR009068 S15/NS1, RNA-binding CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 Gene3D G3DSA:1.10.287.10 2 89 1.5E-37 T 13-10-2018 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 7.0E-40 T 13-10-2018 CS348_02825 f0c95edb037e280ed1c68ea87612755d 89 Pfam PF00312 Ribosomal protein S15 9 88 1.5E-37 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_16765 a007639661e3f4646dc2df048394a778 161 Gene3D G3DSA:2.30.110.10 1 160 3.5E-43 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CS348_16765 a007639661e3f4646dc2df048394a778 161 SUPERFAMILY SSF50475 2 156 3.74E-44 T 13-10-2018 CS348_16765 a007639661e3f4646dc2df048394a778 161 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 12 154 7.1E-23 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 SUPERFAMILY SSF50249 3 123 1.63E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 Gene3D G3DSA:2.40.50.140 1 124 5.2E-63 T 13-10-2018 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 Pfam PF00164 Ribosomal protein S12/S23 12 123 5.1E-43 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 2.6E-70 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 5.2E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 5.2E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 5.2E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 5.2E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 5.2E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 5.2E-60 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.634 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_01955 29495e0d2573e3eb61572cc610d4e48b 124 PIRSF PIRSF002133 1 124 9.5E-54 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_14820 6834199786633acfb86b0b5fd6d39258 386 Hamap MF_01195 N-acetylneuraminate epimerase [nanM]. 11 386 44.893 T 13-10-2018 IPR019936 Mutatrotase, YjhT-like CS348_14820 6834199786633acfb86b0b5fd6d39258 386 SUPERFAMILY SSF117281 49 373 1.44E-28 T 13-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 CS348_14820 6834199786633acfb86b0b5fd6d39258 386 TIGRFAM TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family 32 378 3.7E-149 T 13-10-2018 IPR019936 Mutatrotase, YjhT-like CS348_14820 6834199786633acfb86b0b5fd6d39258 386 Pfam PF01344 Kelch motif 89 132 4.0E-7 T 13-10-2018 IPR006652 Kelch repeat type 1 GO:0005515 CS348_14820 6834199786633acfb86b0b5fd6d39258 386 Gene3D G3DSA:2.120.10.80 174 383 1.1E-8 T 13-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 CS348_14820 6834199786633acfb86b0b5fd6d39258 386 Gene3D G3DSA:2.120.10.80 7 173 9.0E-14 T 13-10-2018 IPR015915 Kelch-type beta propeller GO:0005515 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 8.8E-64 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 Gene3D G3DSA:3.40.47.10 261 413 7.7E-57 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 SUPERFAMILY SSF53901 3 252 4.76E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 Gene3D G3DSA:3.40.47.10 1 255 2.5E-89 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 1.3E-197 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 SUPERFAMILY SSF53901 215 412 8.26E-75 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 SMART SM00825 Beta-ketoacyl synthase 6 413 7.8E-15 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 13-10-2018 IPR018201 Beta-ketoacyl synthase, active site CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 PIRSF PIRSF000447 1 413 3.8E-204 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 CS348_14455 8ec59686c0b0a978ef737063d67f4f7d 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 1.7E-40 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal CS348_03760 610f8ccaa686e43fabf48e7161b3dfd0 74 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 38 66 1.9E-11 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CS348_03760 610f8ccaa686e43fabf48e7161b3dfd0 74 SUPERFAMILY SSF57716 39 72 2.14E-7 T 13-10-2018 CS348_03760 610f8ccaa686e43fabf48e7161b3dfd0 74 Gene3D G3DSA:1.20.120.910 3 74 3.6E-16 T 13-10-2018 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 Pfam PF00364 Biotin-requiring enzyme 527 590 3.9E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 Pfam PF02436 Conserved carboxylase domain 290 489 7.7E-54 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 Gene3D G3DSA:2.40.50.100 515 591 1.5E-24 T 13-10-2018 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 SUPERFAMILY SSF51230 516 590 3.4E-21 T 13-10-2018 IPR011053 Single hybrid motif CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 Pfam PF00682 HMGL-like 3 268 1.9E-69 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 Gene3D G3DSA:3.20.20.70 1 462 1.0E-166 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 SUPERFAMILY SSF51569 3 298 1.41E-88 T 13-10-2018 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 5 587 9.4E-300 T 13-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 SUPERFAMILY SSF89000 295 455 4.71E-46 T 13-10-2018 CS348_20085 716eb6d4c48b5158e364af779ef55b79 591 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 547 564 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_05130 35082847b9c324b8a723c357a3c3ed44 215 SUPERFAMILY SSF53639 1 212 5.3E-69 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_05130 35082847b9c324b8a723c357a3c3ed44 215 SMART SM01007 8 182 2.0E-69 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_05130 35082847b9c324b8a723c357a3c3ed44 215 Hamap MF_00987 L-fuculose phosphate aldolase [fucA]. 1 215 60.252 T 13-10-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 CS348_05130 35082847b9c324b8a723c357a3c3ed44 215 Gene3D G3DSA:3.40.225.10 1 215 1.8E-84 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_05130 35082847b9c324b8a723c357a3c3ed44 215 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 182 2.1E-49 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_05130 35082847b9c324b8a723c357a3c3ed44 215 TIGRFAM TIGR01086 fucA: L-fuculose phosphate aldolase 2 215 1.0E-129 T 13-10-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 1.2E-68 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 13-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 Gene3D G3DSA:3.30.420.10 2 159 7.6E-55 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.911 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 7.3E-45 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 7.3E-45 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 7.3E-45 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 7.3E-45 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 7.3E-45 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 159 2.4E-87 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CS348_10250 e7dc7a6c476ec4978e1259559b66a1f2 173 SUPERFAMILY SSF53098 3 156 9.67E-57 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Gene3D G3DSA:2.40.50.140 49 148 6.0E-16 T 13-10-2018 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SUPERFAMILY SSF50249 67 145 1.72E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Pfam PF00575 S1 RNA binding domain 641 724 6.2E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 725 1.5E-287 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 4.4E-15 T 13-10-2018 IPR013668 Ribonuclease R winged-helix domain CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SMART SM00316 642 725 2.0E-16 T 13-10-2018 IPR022967 RNA-binding domain, S1 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Pfam PF08206 Ribonuclease B OB domain 87 144 4.3E-22 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 ProSitePatterns PS01175 Ribonuclease II family signature. 555 579 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SMART SM00955 260 588 8.6E-186 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SMART SM00357 86 145 2.1E-16 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 725 1.6E-287 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Hamap MF_01895 Ribonuclease R [rnr]. 38 725 58.05 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SUPERFAMILY SSF50249 138 235 8.19E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Pfam PF00773 RNB domain 260 587 2.2E-110 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 Gene3D G3DSA:2.40.50.140 645 755 2.4E-24 T 13-10-2018 CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SUPERFAMILY SSF50249 644 724 2.55E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_21775 f7d65f0b67b268887b43dbdebde8dd0f 812 SUPERFAMILY SSF50249 222 641 3.34E-143 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 Pfam PF00710 Asparaginase, N-terminal 6 188 5.5E-65 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 Gene3D G3DSA:3.40.50.1170 1 208 4.4E-93 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 PIRSF PIRSF001220 1 334 2.2E-97 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 6.0E-137 T 13-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 SMART SM00870 5 323 2.8E-141 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 PIRSF PIRSF500176 2 332 8.1E-117 T 13-10-2018 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 Gene3D G3DSA:3.40.50.40 209 336 6.1E-47 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 1.2E-16 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 1.2E-16 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 1.2E-16 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CS348_13870 1d8e71683e06ddace9b020e7fa27b3e7 338 SUPERFAMILY SSF53774 3 335 9.16E-113 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 183 195 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 Gene3D G3DSA:1.20.140.10 286 465 1.3E-43 T 13-10-2018 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 SUPERFAMILY SSF47203 283 443 5.15E-42 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 SUPERFAMILY SSF56645 61 283 2.26E-33 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 439 1.0E-30 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 398 417 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 Gene3D G3DSA:2.40.110.20 130 285 2.2E-59 T 13-10-2018 CS348_21735 efb9f13abcb35bbb6b0de2ddba41c466 540 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 181 275 2.1E-16 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CS348_10700 f2f99f713fda867e3e9722d42d141b32 59 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 58 19.759 T 13-10-2018 IPR005371 Uncharacterised protein family UPF0181 CS348_10700 f2f99f713fda867e3e9722d42d141b32 59 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 48 1.0E-20 T 13-10-2018 IPR005371 Uncharacterised protein family UPF0181 CS348_10700 f2f99f713fda867e3e9722d42d141b32 59 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 49 6.5E-28 T 13-10-2018 IPR005371 Uncharacterised protein family UPF0181 CS348_11470 7e1ae973ef04ebb6af2d91d7c9caef7f 104 SMART SM00857 1 93 4.3E-6 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CS348_11470 7e1ae973ef04ebb6af2d91d7c9caef7f 104 Gene3D G3DSA:3.40.50.1390 1 82 1.4E-27 T 13-10-2018 CS348_11470 7e1ae973ef04ebb6af2d91d7c9caef7f 104 Pfam PF00239 Resolvase, N terminal domain 4 91 7.5E-28 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CS348_11470 7e1ae973ef04ebb6af2d91d7c9caef7f 104 ProSitePatterns PS00398 Site-specific recombinases signature 2. 11 23 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 CS348_11470 7e1ae973ef04ebb6af2d91d7c9caef7f 104 SUPERFAMILY SSF53041 4 91 1.18E-25 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CS348_22700 a70fe9955fca110f122c04f03be2fddf 145 Pfam PF13673 Acetyltransferase (GNAT) domain 37 131 1.1E-18 T 13-10-2018 IPR000182 GNAT domain CS348_22700 a70fe9955fca110f122c04f03be2fddf 145 Gene3D G3DSA:3.40.630.30 1 144 3.3E-44 T 13-10-2018 CS348_22700 a70fe9955fca110f122c04f03be2fddf 145 SUPERFAMILY SSF55729 1 139 3.99E-30 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_09205 360910417badc5cd4446739e6ef4df9a 333 SUPERFAMILY SSF53756 3 332 7.63E-63 T 13-10-2018 CS348_09205 360910417badc5cd4446739e6ef4df9a 333 Gene3D G3DSA:3.40.50.2000 160 306 5.4E-33 T 13-10-2018 CS348_09205 360910417badc5cd4446739e6ef4df9a 333 Pfam PF13439 Glycosyltransferase Family 4 37 155 1.4E-13 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CS348_09205 360910417badc5cd4446739e6ef4df9a 333 Gene3D G3DSA:3.40.50.2000 1 159 2.4E-14 T 13-10-2018 CS348_09205 360910417badc5cd4446739e6ef4df9a 333 Pfam PF00534 Glycosyl transferases group 1 163 302 1.6E-26 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_12395 0d62eb8031bcab99d2dc35ba264498d7 315 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 12 291 1.0E-58 T 13-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 162 373 5.6E-71 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 453 5.4E-197 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 SUPERFAMILY SSF52540 109 379 1.17E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 Gene3D G3DSA:3.40.50.12240 19 456 8.5E-179 T 13-10-2018 CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 SMART SM00382 174 357 7.4E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 450 6.5E-196 T 13-10-2018 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_09880 6ba764e19450316d6c051f8e02b4b77e 456 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 364 373 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 SUPERFAMILY SSF52728 161 319 3.66E-54 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 Pfam PF03610 PTS system fructose IIA component 5 116 1.3E-35 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 2 117 3.0E-51 T 13-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 Gene3D G3DSA:3.40.50.510 2 136 3.2E-43 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 SUPERFAMILY SSF53062 3 128 9.03E-38 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 Gene3D G3DSA:3.40.35.10 158 322 1.9E-61 T 13-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 Pfam PF03830 PTS system sorbose subfamily IIB component 163 309 2.3E-55 T 13-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 CS348_10665 633b0e421dda527e8cb0a17154d2cf26 322 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 163 310 2.9E-56 T 13-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 CS348_03290 0fd3d29f3d4ce4249a6294d981001b8b 257 Hamap MF_00548 Zinc transporter ZupT [zupT]. 1 252 30.049 T 13-10-2018 IPR023498 Zinc transporter ZupT CS348_03290 0fd3d29f3d4ce4249a6294d981001b8b 257 Pfam PF02535 ZIP Zinc transporter 98 246 9.2E-25 T 13-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 CS348_10640 afd0b899249a398c98a26277d3f9a8d1 206 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 19 203 25.632 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP CS348_10640 afd0b899249a398c98a26277d3f9a8d1 206 Pfam PF02659 Putative manganese efflux pump 49 200 1.8E-52 T 13-10-2018 IPR003810 Putative manganese efflux pump CS348_21605 2012dc893760f47578fdd1a456475c79 128 Pfam PF01638 HxlR-like helix-turn-helix 29 116 7.9E-32 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type CS348_21605 2012dc893760f47578fdd1a456475c79 128 Gene3D G3DSA:1.10.10.10 1 128 6.9E-44 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21605 2012dc893760f47578fdd1a456475c79 128 SUPERFAMILY SSF46785 14 120 9.93E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 Gene3D G3DSA:1.10.10.10 120 240 3.2E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 SUPERFAMILY SSF52172 2 190 2.21E-30 T 13-10-2018 IPR011006 CheY-like superfamily CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 Pfam PF00486 Transcriptional regulatory protein, C terminal 160 233 9.8E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 Gene3D G3DSA:3.40.50.2300 1 119 7.3E-28 T 13-10-2018 CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 Pfam PF00072 Response regulator receiver domain 4 112 1.9E-18 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 SMART SM00862 157 233 1.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_12680 ac2b3240b5381b0d9a5bd793d3ea24f6 243 SMART SM00448 2 112 1.4E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 Gene3D G3DSA:1.20.1250.20 1 493 1.6E-132 T 13-10-2018 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 Hamap MF_01880 Dipeptide permease D [dtpD]. 1 493 58.75 T 13-10-2018 IPR023777 Amino acid/peptide transporter family, dipeptide permease D GO:0005887|GO:0042938 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 65 89 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 140 152 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 466 5.8E-81 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 Pfam PF00854 POT family 77 442 1.2E-89 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CS348_16710 13bd559f9b702c22ce36917d37ed546a 493 SUPERFAMILY SSF103473 7 478 4.97E-27 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_09195 990e31612c919852d37c57c8e0e68bc7 355 Pfam PF00534 Glycosyl transferases group 1 173 324 1.0E-24 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_09195 990e31612c919852d37c57c8e0e68bc7 355 Gene3D G3DSA:3.40.50.2000 166 333 1.4E-40 T 13-10-2018 CS348_09195 990e31612c919852d37c57c8e0e68bc7 355 SUPERFAMILY SSF53756 7 348 7.85E-48 T 13-10-2018 CS348_09195 990e31612c919852d37c57c8e0e68bc7 355 Gene3D G3DSA:3.40.50.2000 13 342 1.4E-40 T 13-10-2018 CS348_07085 9b73066b8ce27684d52c3a9029e15621 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 405 5.2E-130 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CS348_07085 9b73066b8ce27684d52c3a9029e15621 429 Pfam PF00860 Permease family 16 383 2.6E-106 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CS348_07085 9b73066b8ce27684d52c3a9029e15621 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 5.3E-36 T 13-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 Gene3D G3DSA:3.90.230.10 172 438 1.1E-104 T 13-10-2018 CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 SUPERFAMILY SSF55920 175 433 6.67E-88 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 PRINTS PR00599 Methionine aminopeptidase-1 signature 370 382 1.1E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 1.1E-5 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 SMART SM01011 1 136 7.9E-59 T 13-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 SUPERFAMILY SSF53092 1 174 1.31E-53 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 Gene3D G3DSA:3.40.350.10 1 171 2.0E-63 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CS348_04675 4c375a61faf657c5bcbbac8ca0e878d9 438 Pfam PF00557 Metallopeptidase family M24 182 411 4.8E-66 T 13-10-2018 IPR000994 Peptidase M24 CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 8 810 0.0 T 13-10-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 Gene3D G3DSA:3.20.70.20 10 810 9.0E-279 T 13-10-2018 CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 SUPERFAMILY SSF51998 5 808 7.94E-232 T 13-10-2018 CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 ProSitePatterns PS00850 Glycine radical domain signature. 781 789 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 PIRSF PIRSF000379 33 810 3.7E-196 T 13-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 Pfam PF02901 Pyruvate formate lyase-like 10 671 1.3E-213 T 13-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 CS348_16120 ea4cb5afb653751b916c0e7c9b62f483 810 Pfam PF01228 Glycine radical 688 791 7.8E-30 T 13-10-2018 IPR001150 Glycine radical domain GO:0003824 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 SUPERFAMILY SSF56796 3 355 1.27E-89 T 13-10-2018 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 Gene3D G3DSA:3.40.50.1970 2 159 2.8E-41 T 13-10-2018 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 3.8E-66 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 PIRSF PIRSF000112 1 360 1.5E-97 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 CS348_23045 b3bace57e99939d4cbf69b2499efe5bd 367 Gene3D G3DSA:1.20.1090.10 160 367 1.0E-81 T 13-10-2018 CS348_02675 6ea8d36199382b8c094a39d87c1ad15b 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 1.3E-105 T 13-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CS348_02675 6ea8d36199382b8c094a39d87c1ad15b 260 Pfam PF02405 Permease MlaE 44 256 1.9E-72 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 Gene3D G3DSA:2.40.160.10 22 362 1.0E-151 T 13-10-2018 IPR023614 Porin domain superfamily CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 Pfam PF00267 Gram-negative porin 27 362 3.5E-150 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 270 289 2.0E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 2.0E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 236 253 2.0E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 2.0E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 2.0E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 2.0E-73 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 314 330 - T 13-10-2018 IPR013793 Porin, Gram-negative type, conserved site CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 4.6E-19 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 4.6E-19 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 314 331 4.6E-19 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 4.6E-19 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 4.6E-19 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12130 00a6a544b9f6b80e809b20dfa595b6fc 362 SUPERFAMILY SSF56935 22 362 9.42E-85 T 13-10-2018 CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 Pfam PF00308 Bacterial dnaA protein 24 220 3.0E-16 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 SUPERFAMILY SSF52540 25 219 1.09E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 Gene3D G3DSA:1.10.8.60 175 241 2.6E-27 T 13-10-2018 CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 51 71 1.7E-7 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 139 166 1.7E-7 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 Gene3D G3DSA:3.40.50.300 4 172 1.5E-35 T 13-10-2018 CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 13 241 57.922 T 13-10-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae CS348_07090 bae84cbcc11609623cc22d6c1457d8d6 241 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 14 240 2.3E-84 T 13-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 Gene3D G3DSA:3.40.1190.20 1 309 3.2E-118 T 13-10-2018 IPR029056 Ribokinase-like CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 Pfam PF00294 pfkB family carbohydrate kinase 12 296 1.4E-63 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 306 1.1E-97 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 SUPERFAMILY SSF53613 4 297 4.83E-63 T 13-10-2018 IPR029056 Ribokinase-like CS348_13685 587367336dc3c8db6f081f80a38f0dd7 310 PIRSF PIRSF000535 1 310 2.4E-109 T 13-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 CS348_23005 1f4b7e98f595c812403185357dd7826e 258 SUPERFAMILY SSF53633 1 256 1.05E-61 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_23005 1f4b7e98f595c812403185357dd7826e 258 Hamap MF_00082 Acetylglutamate kinase [argB]. 2 251 43.376 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23005 1f4b7e98f595c812403185357dd7826e 258 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 3.1E-75 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23005 1f4b7e98f595c812403185357dd7826e 258 PIRSF PIRSF000728 1 258 3.4E-72 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_23005 1f4b7e98f595c812403185357dd7826e 258 Pfam PF00696 Amino acid kinase family 5 235 3.6E-37 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CS348_23005 1f4b7e98f595c812403185357dd7826e 258 Gene3D G3DSA:3.40.1160.10 1 257 6.2E-72 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CS348_18295 66fd245e2b7d6fb3bffcf0037fbaf13c 179 Gene3D G3DSA:2.60.40.1620 43 177 1.8E-49 T 13-10-2018 IPR037125 Lipoprotein YajI-like superfamily CS348_18295 66fd245e2b7d6fb3bffcf0037fbaf13c 179 Pfam PF11622 Protein of unknown function (DUF3251) 20 176 1.1E-79 T 13-10-2018 IPR021658 Domain of unknown function DUF3251 CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 Pfam PF00005 ABC transporter 17 178 3.3E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 Pfam PF00005 ABC transporter 328 459 6.5E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 SUPERFAMILY SSF52540 2 253 5.87E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 SMART SM00382 337 506 3.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 SMART SM00382 26 223 8.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 Gene3D G3DSA:3.40.50.300 6 274 5.4E-60 T 13-10-2018 CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 SUPERFAMILY SSF52540 294 516 2.74E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 Pfam PF12848 ABC transporter 217 297 1.7E-29 T 13-10-2018 IPR032781 ABC-transporter extension domain CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01885 8bcb33eacfc7e6e55c922c041faf95a5 635 Gene3D G3DSA:3.40.50.300 276 543 9.7E-56 T 13-10-2018 CS348_13500 e64405c14cf48c7175f5d7e96db1c633 361 Pfam PF05125 Phage major capsid protein, P2 family 14 344 1.3E-112 T 13-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid CS348_13500 e64405c14cf48c7175f5d7e96db1c633 361 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 13 346 2.1E-75 T 13-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid CS348_17740 42559d2e8ebed6a276c94bad84fd5b3b 70 SUPERFAMILY SSF55174 7 69 2.88E-19 T 13-10-2018 CS348_17740 42559d2e8ebed6a276c94bad84fd5b3b 70 Gene3D G3DSA:3.10.290.10 1 70 8.2E-30 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CS348_17740 42559d2e8ebed6a276c94bad84fd5b3b 70 Pfam PF13275 S4 domain 9 68 7.8E-24 T 13-10-2018 CS348_17145 816fbba885405f1417ddb8935c11db9c 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 480 2.0E-169 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CS348_17145 816fbba885405f1417ddb8935c11db9c 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 6 486 5.5E-183 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 CS348_17145 816fbba885405f1417ddb8935c11db9c 487 PIRSF PIRSF002457 1 487 6.9E-162 T 13-10-2018 IPR030676 Citrate carrier CitT-related CS348_21765 7d49e634aafdf53f02903fadb4d147eb 134 Pfam PF09938 Uncharacterized protein conserved in bacteria (DUF2170) 2 131 1.0E-44 T 13-10-2018 IPR019231 Protein of unknown function DUF2170 CS348_15165 a1866df6c65fe26498b9531f31a875b2 55 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 55 6.0E-26 T 13-10-2018 IPR007040 Ribosome modulation factor CS348_15165 a1866df6c65fe26498b9531f31a875b2 55 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 31.683 T 13-10-2018 IPR007040 Ribosome modulation factor CS348_15165 a1866df6c65fe26498b9531f31a875b2 55 Pfam PF04957 Ribosome modulation factor 1 52 6.2E-30 T 13-10-2018 IPR007040 Ribosome modulation factor CS348_15165 a1866df6c65fe26498b9531f31a875b2 55 Gene3D G3DSA:1.10.10.620 1 55 2.2E-30 T 13-10-2018 IPR023200 Ribosome modulation factor domain superfamily CS348_02940 2f92ee38f100691bf141fb0d555170d3 154 Gene3D G3DSA:3.40.930.10 2 146 1.2E-34 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_02940 2f92ee38f100691bf141fb0d555170d3 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 136 2.1E-24 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_02940 2f92ee38f100691bf141fb0d555170d3 154 SUPERFAMILY SSF55804 6 136 5.62E-29 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 Pfam PF01037 Lrp/AsnC ligand binding domain 76 143 1.5E-17 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CS348_24420 43711b143a9dffc3f92297303ed1462f 152 SUPERFAMILY SSF46785 4 66 5.86E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_24420 43711b143a9dffc3f92297303ed1462f 152 SMART SM00344 6 113 2.8E-44 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 22 33 2.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 33 52 2.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 6 22 2.4E-14 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 7 53 4.6E-14 T 13-10-2018 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 SUPERFAMILY SSF54909 68 152 2.68E-19 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_24420 43711b143a9dffc3f92297303ed1462f 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 24 50 - T 13-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CS348_24420 43711b143a9dffc3f92297303ed1462f 152 Gene3D G3DSA:3.30.70.920 58 141 7.5E-35 T 13-10-2018 CS348_24420 43711b143a9dffc3f92297303ed1462f 152 Gene3D G3DSA:1.10.10.10 1 57 2.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 502 1.0E-142 T 13-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 504 51.214 T 13-10-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 Gene3D G3DSA:1.10.3210.10 1 157 1.5E-47 T 13-10-2018 CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 Pfam PF13286 Phosphohydrolase-associated domain 476 499 9.9E-5 T 13-10-2018 IPR026875 Phosphohydrolase-associated domain CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 SMART SM00471 62 282 2.5E-12 T 13-10-2018 IPR003607 HD/PDEase domain CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 Gene3D G3DSA:1.10.3210.10 158 262 1.1E-14 T 13-10-2018 CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 Pfam PF01966 HD domain 66 146 3.8E-11 T 13-10-2018 IPR006674 HD domain CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 SUPERFAMILY SSF109604 31 501 2.04E-68 T 13-10-2018 CS348_19280 bb21e9923da2a5f3834bfd234249451e 505 Gene3D G3DSA:1.10.3410.10 263 390 3.0E-21 T 13-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 SMART SM00862 145 216 1.4E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 SMART SM00448 1 112 1.2E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 Gene3D G3DSA:3.40.50.2300 1 121 4.7E-38 T 13-10-2018 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 SUPERFAMILY SSF52172 1 118 1.42E-35 T 13-10-2018 IPR011006 CheY-like superfamily CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 Pfam PF00072 Response regulator receiver domain 3 113 5.0E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 3.4E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 SUPERFAMILY SSF46894 118 217 4.25E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_22210 ffa7b77e3a538f33ca86294e98c4f1f7 222 Gene3D G3DSA:1.10.10.10 122 220 2.3E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_24090 d2164a9dcf1a2a80e8d70ee570d56ab4 129 Pfam PF11457 Protein of unknown function (DUF3021) 17 128 6.0E-9 T 13-10-2018 IPR021560 Protein of unknown function DUF3021 CS348_00995 f830cac7d5532c6ae9c34515ecebf282 96 Gene3D G3DSA:1.10.260.40 39 96 8.5E-13 T 13-10-2018 CS348_00995 f830cac7d5532c6ae9c34515ecebf282 96 SUPERFAMILY SSF47413 39 82 1.53E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_10630 b10730f429c27c1db99273f77f417928 581 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 214 3.9E-18 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CS348_10630 b10730f429c27c1db99273f77f417928 581 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 12 563 43.932 T 13-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CS348_10630 b10730f429c27c1db99273f77f417928 581 Gene3D G3DSA:3.30.450.330 230 543 8.6E-103 T 13-10-2018 CS348_10630 b10730f429c27c1db99273f77f417928 581 SUPERFAMILY SSF56519 56 227 1.2E-45 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CS348_10630 b10730f429c27c1db99273f77f417928 581 Gene3D G3DSA:3.40.710.10 289 469 8.6E-103 T 13-10-2018 CS348_10630 b10730f429c27c1db99273f77f417928 581 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 547 5.9E-79 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CS348_10630 b10730f429c27c1db99273f77f417928 581 Gene3D G3DSA:3.90.1310.30 52 228 3.4E-45 T 13-10-2018 CS348_10630 b10730f429c27c1db99273f77f417928 581 SUPERFAMILY SSF56601 228 556 1.09E-88 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_20320 d37b461376e87517223b70a929308c6b 188 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 8 17 - T 13-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 CS348_20320 d37b461376e87517223b70a929308c6b 188 Pfam PF01184 GPR1/FUN34/yaaH family 4 176 3.1E-41 T 13-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 CS348_03555 9a5469dd0df96f16e0e70b5abba87963 567 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CS348_03555 9a5469dd0df96f16e0e70b5abba87963 567 Gene3D G3DSA:1.10.645.10 1 552 5.4E-218 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_03555 9a5469dd0df96f16e0e70b5abba87963 567 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 543 552 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 CS348_03555 9a5469dd0df96f16e0e70b5abba87963 567 Pfam PF00374 Nickel-dependent hydrogenase 39 552 5.4E-207 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 CS348_03555 9a5469dd0df96f16e0e70b5abba87963 567 SUPERFAMILY SSF56762 1 552 1.96E-165 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_15860 c1db6e8c09abea379bf21c6626195976 242 Gene3D G3DSA:3.40.50.300 1 242 1.2E-69 T 13-10-2018 CS348_15860 c1db6e8c09abea379bf21c6626195976 242 Pfam PF00005 ABC transporter 20 170 6.9E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_15860 c1db6e8c09abea379bf21c6626195976 242 SUPERFAMILY SSF52540 3 233 2.03E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15860 c1db6e8c09abea379bf21c6626195976 242 SMART SM00382 27 218 9.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_15860 c1db6e8c09abea379bf21c6626195976 242 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_15860 c1db6e8c09abea379bf21c6626195976 242 PIRSF PIRSF039085 1 242 8.0E-84 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CS348_02185 1b8615bc66b5492272ddfe81b5161730 374 Pfam PF02481 DNA recombination-mediator protein A 70 274 2.4E-72 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CS348_02185 1b8615bc66b5492272ddfe81b5161730 374 Gene3D G3DSA:3.40.50.450 2 285 1.7E-89 T 13-10-2018 CS348_02185 1b8615bc66b5492272ddfe81b5161730 374 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 65 283 1.7E-82 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CS348_02185 1b8615bc66b5492272ddfe81b5161730 374 SUPERFAMILY SSF102405 77 283 2.14E-40 T 13-10-2018 CS348_02185 1b8615bc66b5492272ddfe81b5161730 374 Gene3D G3DSA:1.10.10.10 295 361 5.6E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08340 4ae9d1e1cc81fc0fb1588c63908f3a27 216 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 37 210 1.1E-50 T 13-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like CS348_08340 4ae9d1e1cc81fc0fb1588c63908f3a27 216 Gene3D G3DSA:2.60.120.590 11 215 3.6E-62 T 13-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily CS348_08340 4ae9d1e1cc81fc0fb1588c63908f3a27 216 SUPERFAMILY SSF51197 15 212 9.61E-60 T 13-10-2018 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 9.3E-206 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 SUPERFAMILY SSF54826 3 138 4.57E-56 T 13-10-2018 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 Hamap MF_00318 Enolase [eno]. 2 416 44.323 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 ProSitePatterns PS00164 Enolase signature. 339 352 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 SMART SM01193 4 134 1.7E-92 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PRINTS PR00148 Enolase signature 339 353 3.9E-44 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PRINTS PR00148 Enolase signature 368 385 3.9E-44 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PRINTS PR00148 Enolase signature 37 51 3.9E-44 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PRINTS PR00148 Enolase signature 165 178 3.9E-44 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PRINTS PR00148 Enolase signature 316 327 3.9E-44 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PRINTS PR00148 Enolase signature 107 123 3.9E-44 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 Gene3D G3DSA:3.30.390.10 3 127 3.5E-54 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 SUPERFAMILY SSF51604 143 427 6.93E-129 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 SMART SM01192 143 430 2.3E-215 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 1.9E-142 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 Gene3D G3DSA:3.20.20.120 128 432 2.4E-138 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 Pfam PF03952 Enolase, N-terminal domain 4 134 1.1E-57 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_05260 ed3eb0e6771a78acf308aa4cfbe57a6e 432 PIRSF PIRSF001400 1 430 8.9E-193 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CS348_09550 1b89429c364a51755487dcf5de14d8ed 245 Hamap MF_01462 Cobalt transport protein CbiM [cbiM]. 31 243 27.609 T 13-10-2018 IPR018024 Cobalamin (vitamin B12) transport protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 CS348_09550 1b89429c364a51755487dcf5de14d8ed 245 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 32 237 1.2E-54 T 13-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 CS348_09550 1b89429c364a51755487dcf5de14d8ed 245 TIGRFAM TIGR00123 cbiM: cobalamin biosynthesis protein CbiM 31 243 1.9E-115 T 13-10-2018 IPR018024 Cobalamin (vitamin B12) transport protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 CS348_09550 1b89429c364a51755487dcf5de14d8ed 245 Gene3D G3DSA:1.10.1760.20 31 241 1.2E-53 T 13-10-2018 CS348_17170 ebad2b14049e8d283ed641c2530ade01 142 Pfam PF00582 Universal stress protein family 1 142 1.0E-24 T 13-10-2018 IPR006016 UspA CS348_17170 ebad2b14049e8d283ed641c2530ade01 142 PRINTS PR01438 Universal stress protein signature 120 142 3.4E-14 T 13-10-2018 IPR006015 Universal stress protein A CS348_17170 ebad2b14049e8d283ed641c2530ade01 142 PRINTS PR01438 Universal stress protein signature 2 20 3.4E-14 T 13-10-2018 IPR006015 Universal stress protein A CS348_17170 ebad2b14049e8d283ed641c2530ade01 142 PRINTS PR01438 Universal stress protein signature 103 115 3.4E-14 T 13-10-2018 IPR006015 Universal stress protein A CS348_17170 ebad2b14049e8d283ed641c2530ade01 142 SUPERFAMILY SSF52402 1 142 9.21E-27 T 13-10-2018 CS348_17170 ebad2b14049e8d283ed641c2530ade01 142 Gene3D G3DSA:3.40.50.620 1 142 3.2E-30 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_15650 a16b385b792d56963c5a3219e301a897 54 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 1 54 1.0E-24 T 13-10-2018 IPR024400 Protein of unknown function DUF2635 CS348_15650 a16b385b792d56963c5a3219e301a897 54 Pfam PF10948 Protein of unknown function (DUF2635) 3 47 1.0E-16 T 13-10-2018 IPR024400 Protein of unknown function DUF2635 CS348_04455 80721a7a82dd61808583949b42a4c503 234 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 229 5.0E-100 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CS348_04455 80721a7a82dd61808583949b42a4c503 234 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 228 33.934 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CS348_04455 80721a7a82dd61808583949b42a4c503 234 PIRSF PIRSF004848 1 234 7.8E-74 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CS348_04455 80721a7a82dd61808583949b42a4c503 234 Pfam PF01168 Alanine racemase, N-terminal domain 7 229 2.6E-29 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_04455 80721a7a82dd61808583949b42a4c503 234 SUPERFAMILY SSF51419 1 227 4.58E-79 T 13-10-2018 IPR029066 PLP-binding barrel CS348_04455 80721a7a82dd61808583949b42a4c503 234 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 79 93 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CS348_04455 80721a7a82dd61808583949b42a4c503 234 Gene3D G3DSA:3.20.20.10 1 228 3.5E-84 T 13-10-2018 IPR029066 PLP-binding barrel CS348_20825 ff438ca5953c31894e0ee39385fa8f0f 59 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 7 58 18.804 T 13-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 CS348_20825 ff438ca5953c31894e0ee39385fa8f0f 59 Pfam PF07043 Protein of unknown function (DUF1328) 12 50 1.3E-13 T 13-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 CS348_20825 ff438ca5953c31894e0ee39385fa8f0f 59 PIRSF PIRSF036466 7 59 1.3E-20 T 13-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 CS348_23130 f650a746ff63b6653cb85510d51bf968 443 SMART SM01086 335 434 8.8E-21 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_23130 f650a746ff63b6653cb85510d51bf968 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 9.7E-236 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 CS348_23130 f650a746ff63b6653cb85510d51bf968 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.572 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 CS348_23130 f650a746ff63b6653cb85510d51bf968 443 SMART SM00382 49 332 1.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_23130 f650a746ff63b6653cb85510d51bf968 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 1.7E-5 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CS348_23130 f650a746ff63b6653cb85510d51bf968 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 188 329 1.3E-42 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_23130 f650a746ff63b6653cb85510d51bf968 443 Gene3D G3DSA:1.10.8.60 335 440 3.5E-41 T 13-10-2018 CS348_23130 f650a746ff63b6653cb85510d51bf968 443 SUPERFAMILY SSF52540 3 441 4.02E-93 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23130 f650a746ff63b6653cb85510d51bf968 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 106 6.8E-7 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CS348_21495 60df08677851d7cbd07673186b216248 269 Pfam PF04962 KduI/IolB family 10 262 1.3E-107 T 13-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 CS348_21495 60df08677851d7cbd07673186b216248 269 Gene3D G3DSA:2.60.120.10 121 269 2.3E-62 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_21495 60df08677851d7cbd07673186b216248 269 Gene3D G3DSA:2.60.120.10 13 120 6.5E-41 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_21495 60df08677851d7cbd07673186b216248 269 PIRSF PIRSF036628 1 268 6.7E-113 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 CS348_21495 60df08677851d7cbd07673186b216248 269 SUPERFAMILY SSF51182 15 251 9.78E-69 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_21495 60df08677851d7cbd07673186b216248 269 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 17 262 1.7E-97 T 13-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 Gene3D G3DSA:3.40.50.1980 234 349 2.2E-122 T 13-10-2018 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PIRSF PIRSF000099 1 430 5.3E-172 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 Gene3D G3DSA:3.40.50.1980 33 232 2.2E-122 T 13-10-2018 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 Pfam PF00815 Histidinol dehydrogenase 28 427 4.1E-165 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 SUPERFAMILY SSF53720 7 429 4.32E-93 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 230 262 - T 13-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 109 136 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 168 194 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 36 60 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 361 379 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 320 345 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 198 223 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 7.2E-103 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 36 426 7.6E-161 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_09290 266dd5d21b2106f70fee6046b35fed31 434 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 7 427 41.1 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CS348_03650 7370285e3888a771b4ad51f00aedcce8 292 Gene3D G3DSA:3.60.110.10 1 285 2.0E-48 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_03650 7370285e3888a771b4ad51f00aedcce8 292 Pfam PF00795 Carbon-nitrogen hydrolase 20 263 1.8E-19 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CS348_03650 7370285e3888a771b4ad51f00aedcce8 292 SUPERFAMILY SSF56317 3 268 7.98E-47 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 SMART SM00877 185 262 6.7E-15 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 SMART SM00877 79 161 4.6E-11 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 SUPERFAMILY SSF143414 79 156 7.85E-9 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 SUPERFAMILY SSF143414 185 260 9.55E-12 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 Gene3D G3DSA:3.30.70.1810 60 152 2.2E-44 T 13-10-2018 CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 PIRSF PIRSF012290 38 270 2.8E-109 T 13-10-2018 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0031469 CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 TIGRFAM TIGR04501 microcomp_PduB: microcompartment protein PduB 46 270 7.4E-120 T 13-10-2018 IPR030984 Microcompartment protein PduB GO:0005198 CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 Gene3D G3DSA:3.30.70.1810 153 245 2.2E-44 T 13-10-2018 CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 Pfam PF00936 BMC domain 186 256 3.9E-14 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_09470 7828014b2d4e8127ae1e799223a5db43 270 Pfam PF00936 BMC domain 80 148 5.9E-12 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 Gene3D G3DSA:3.90.45.10 2 169 1.1E-68 T 13-10-2018 IPR036821 Peptide deformylase superfamily CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 SUPERFAMILY SSF56420 3 164 4.45E-62 T 13-10-2018 IPR036821 Peptide deformylase superfamily CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.0E-65 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 PRINTS PR01576 Peptide deformylase signature 101 119 1.4E-38 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 PRINTS PR01576 Peptide deformylase signature 120 149 1.4E-38 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 PRINTS PR01576 Peptide deformylase signature 89 100 1.4E-38 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 PRINTS PR01576 Peptide deformylase signature 33 62 1.4E-38 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 Pfam PF01327 Polypeptide deformylase 4 152 7.6E-51 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 Hamap MF_00163 Peptide deformylase [def]. 2 162 32.147 T 13-10-2018 IPR023635 Peptide deformylase CS348_02180 e5376f5996fdcdcff2dc082338e65741 169 PIRSF PIRSF004749 1 168 1.7E-55 T 13-10-2018 IPR023635 Peptide deformylase CS348_15350 07766e450356fb9a5d4e009cb781165e 586 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 1.2E-79 T 13-10-2018 IPR003776 YcaO-like domain CS348_15350 07766e450356fb9a5d4e009cb781165e 586 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 1.0E-168 T 13-10-2018 IPR003776 YcaO-like domain CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.7E-19 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 SUPERFAMILY SSF46689 10 78 2.82E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.2E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 86 169 9.7E-8 T 13-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 Gene3D G3DSA:1.10.357.10 7 194 2.2E-38 T 13-10-2018 CS348_03645 08e08f3c0e8dcd03afb9a1971fb95b04 198 SUPERFAMILY SSF48498 85 171 2.55E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_23715 b9ff404424da3af8a56deb16f55bd418 230 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 14 230 4.8E-83 T 13-10-2018 IPR009331 Oligogalacturonate-specific porin CS348_23715 b9ff404424da3af8a56deb16f55bd418 230 Gene3D G3DSA:2.40.160.40 24 229 2.3E-52 T 13-10-2018 CS348_23715 b9ff404424da3af8a56deb16f55bd418 230 SUPERFAMILY SSF56935 19 230 7.69E-5 T 13-10-2018 CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 SMART SM00420 6 58 1.8E-23 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 SMART SM01134 73 233 3.0E-66 T 13-10-2018 CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 SUPERFAMILY SSF100950 77 235 1.36E-26 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 SUPERFAMILY SSF46785 4 57 2.15E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 Gene3D G3DSA:1.10.10.10 1 55 1.6E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 Pfam PF00455 DeoR C terminal sensor domain 77 231 2.8E-49 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.5E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.5E-6 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05435 5e99d3be9cbe23dfaec6edce697bcab1 254 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 5.2E-17 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_15465 df0789ea9cc20f0c3dac5b329188eace 286 Gene3D G3DSA:2.60.120.10 149 253 2.9E-85 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_15465 df0789ea9cc20f0c3dac5b329188eace 286 Pfam PF05726 Pirin C-terminal cupin domain 182 284 5.6E-32 T 13-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 CS348_15465 df0789ea9cc20f0c3dac5b329188eace 286 PIRSF PIRSF006232 3 286 7.2E-91 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CS348_15465 df0789ea9cc20f0c3dac5b329188eace 286 Gene3D G3DSA:2.60.120.10 17 279 2.9E-85 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_15465 df0789ea9cc20f0c3dac5b329188eace 286 Pfam PF02678 Pirin 21 127 6.8E-36 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CS348_15465 df0789ea9cc20f0c3dac5b329188eace 286 SUPERFAMILY SSF51182 2 285 3.34E-84 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_23990 31c583f7251910a301d8645ee17fde7f 299 Pfam PF00892 EamA-like transporter family 139 274 3.0E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_23990 31c583f7251910a301d8645ee17fde7f 299 Pfam PF00892 EamA-like transporter family 2 128 1.1E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_23990 31c583f7251910a301d8645ee17fde7f 299 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 7.4E-88 T 13-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 CS348_23990 31c583f7251910a301d8645ee17fde7f 299 SUPERFAMILY SSF103481 182 278 3.79E-8 T 13-10-2018 CS348_23990 31c583f7251910a301d8645ee17fde7f 299 SUPERFAMILY SSF103481 35 131 1.15E-5 T 13-10-2018 CS348_02190 20c16023b15ea6f300d7acdb4881baca 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 9.3E-59 T 13-10-2018 IPR007456 Smg CS348_02190 20c16023b15ea6f300d7acdb4881baca 157 Hamap MF_00598 Protein Smg [smg]. 1 157 33.27 T 13-10-2018 IPR007456 Smg CS348_20490 2153523d6034772b8ca7e3e3142f1c39 214 Pfam PF10144 Bacterial virulence factor haemolysin 1 160 1.8E-64 T 13-10-2018 IPR019305 Uncharacterised protein family Smp CS348_25370 7b5d0258954682050df7eaf426d788fb 469 Pfam PF03743 Bacterial conjugation TrbI-like protein 209 405 1.8E-30 T 13-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI CS348_18330 80c94133c9fe71330e9cdc79aecf050b 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 19 102 1.0E-34 T 13-10-2018 IPR003849 Preprotein translocase YajC CS348_18330 80c94133c9fe71330e9cdc79aecf050b 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 3.1E-17 T 13-10-2018 IPR003849 Preprotein translocase YajC CS348_18330 80c94133c9fe71330e9cdc79aecf050b 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 3.1E-17 T 13-10-2018 IPR003849 Preprotein translocase YajC CS348_18330 80c94133c9fe71330e9cdc79aecf050b 110 Pfam PF02699 Preprotein translocase subunit 22 99 3.1E-26 T 13-10-2018 IPR003849 Preprotein translocase YajC CS348_18330 80c94133c9fe71330e9cdc79aecf050b 110 SMART SM01323 19 102 1.5E-36 T 13-10-2018 IPR003849 Preprotein translocase YajC CS348_10200 d49007d5b3762cc9a05bcd30ac24f89d 248 Gene3D G3DSA:3.20.20.380 1 248 5.4E-99 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 CS348_10200 d49007d5b3762cc9a05bcd30ac24f89d 248 SUPERFAMILY SSF110395 3 242 1.16E-76 T 13-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 CS348_10200 d49007d5b3762cc9a05bcd30ac24f89d 248 Pfam PF03932 CutC family 3 199 5.0E-81 T 13-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 CS348_10200 d49007d5b3762cc9a05bcd30ac24f89d 248 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 202 28.675 T 13-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 CS348_07505 7fce8c12fdd3b2fb378613f828817b8a 120 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 6 120 3.0E-63 T 13-10-2018 IPR010749 Protein of unknown function DUF1323 CS348_07505 7fce8c12fdd3b2fb378613f828817b8a 120 Pfam PF07037 Putative transcription regulator (DUF1323) 6 119 3.1E-51 T 13-10-2018 IPR010749 Protein of unknown function DUF1323 CS348_07505 7fce8c12fdd3b2fb378613f828817b8a 120 SUPERFAMILY SSF46955 3 55 1.83E-13 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 36.758 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 Gene3D G3DSA:3.30.70.980 85 235 1.5E-64 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 Gene3D G3DSA:3.30.70.980 130 204 1.5E-64 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 2.4E-107 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 Gene3D G3DSA:1.10.10.200 1 81 2.6E-34 T 13-10-2018 IPR017856 Integrase-like, N-terminal CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 Pfam PF01709 Transcriptional regulator 5 235 1.0E-94 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_10245 c197deb0136c0bb27eb2097abea3b1f6 246 SUPERFAMILY SSF75625 3 244 2.35E-97 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_07590 f4c873ba1a7fc4bcbfb45d986248bb95 332 Pfam PF00248 Aldo/keto reductase family 28 328 7.7E-69 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_07590 f4c873ba1a7fc4bcbfb45d986248bb95 332 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 283 296 3.0E-5 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CS348_07590 f4c873ba1a7fc4bcbfb45d986248bb95 332 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 126 136 3.0E-5 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CS348_07590 f4c873ba1a7fc4bcbfb45d986248bb95 332 PRINTS PR01577 KCNAB voltage-gated K+ channel beta subunit family signature 270 282 3.0E-5 T 13-10-2018 IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related Reactome: R-HSA-1296072 CS348_07590 f4c873ba1a7fc4bcbfb45d986248bb95 332 SUPERFAMILY SSF51430 13 329 1.3E-92 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_07590 f4c873ba1a7fc4bcbfb45d986248bb95 332 Gene3D G3DSA:3.20.20.100 15 332 1.1E-132 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_13925 28ab7cdeafb9fb9d785f7efd02f9c3e5 428 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 424 42.215 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 CS348_13925 28ab7cdeafb9fb9d785f7efd02f9c3e5 428 Pfam PF04285 Protein of unknown function (DUF444) 4 422 6.7E-186 T 13-10-2018 IPR006698 Uncharacterised protein family UPF0229 CS348_15875 1fa1b07320aee31f934605890034dd38 222 SUPERFAMILY SSF161098 6 200 1.02E-27 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15875 1fa1b07320aee31f934605890034dd38 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 4.5E-17 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_15875 1fa1b07320aee31f934605890034dd38 222 Gene3D G3DSA:1.10.3720.10 1 216 3.4E-38 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15875 1fa1b07320aee31f934605890034dd38 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 214 5.4E-12 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_18150 e82982941aa1f64a86d4546db826ab19 192 Pfam PF08139 Prokaryotic membrane lipoprotein lipid attachment site 1 19 5.1E-6 T 13-10-2018 IPR012640 Membrane lipoprotein, lipid attachment site CS348_18150 e82982941aa1f64a86d4546db826ab19 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 9.9E-52 T 13-10-2018 IPR005619 Uncharacterised protein family, YajG CS348_07970 aa671c5181a42ce618ea41db879233f4 164 Gene3D G3DSA:1.10.3190.10 54 164 6.1E-41 T 13-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily CS348_07970 aa671c5181a42ce618ea41db879233f4 164 Pfam PF03887 YfbU domain 1 164 7.0E-69 T 13-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU CS348_07970 aa671c5181a42ce618ea41db879233f4 164 SUPERFAMILY SSF116960 1 164 1.23E-70 T 13-10-2018 CS348_07970 aa671c5181a42ce618ea41db879233f4 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 3.0E-95 T 13-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU CS348_07970 aa671c5181a42ce618ea41db879233f4 164 Gene3D G3DSA:1.10.287.680 1 53 4.9E-35 T 13-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily CS348_07970 aa671c5181a42ce618ea41db879233f4 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 40.462 T 13-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU CS348_07970 aa671c5181a42ce618ea41db879233f4 164 PIRSF PIRSF006272 1 164 5.4E-81 T 13-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU CS348_09570 65924beffd182dde64173ddef045099e 506 SUPERFAMILY SSF52540 1 228 8.67E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09570 65924beffd182dde64173ddef045099e 506 Pfam PF13500 AAA domain 3 227 8.7E-22 T 13-10-2018 CS348_09570 65924beffd182dde64173ddef045099e 506 SUPERFAMILY SSF52317 254 455 1.53E-39 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_09570 65924beffd182dde64173ddef045099e 506 Gene3D G3DSA:3.40.50.880 251 430 1.9E-24 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_09570 65924beffd182dde64173ddef045099e 506 Gene3D G3DSA:3.40.50.300 1 242 1.9E-56 T 13-10-2018 CS348_09570 65924beffd182dde64173ddef045099e 506 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 447 8.3E-60 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 CS348_09570 65924beffd182dde64173ddef045099e 506 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 502 188.251 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 CS348_09570 65924beffd182dde64173ddef045099e 506 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 5 494 3.4E-162 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 CS348_24540 e5a191548aab46adbb9799c32d757671 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 304 2.9E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_24540 e5a191548aab46adbb9799c32d757671 319 SUPERFAMILY SSF161098 28 303 3.79E-33 T 13-10-2018 IPR035906 MetI-like superfamily CS348_24540 e5a191548aab46adbb9799c32d757671 319 Gene3D G3DSA:1.10.3720.10 70 316 4.4E-32 T 13-10-2018 IPR035906 MetI-like superfamily CS348_24540 e5a191548aab46adbb9799c32d757671 319 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 17 311 3.3E-93 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 CS348_07640 7966b0948917794f4c3ce0d1f5825f02 397 SUPERFAMILY SSF53850 9 311 5.22E-40 T 13-10-2018 CS348_07640 7966b0948917794f4c3ce0d1f5825f02 397 Gene3D G3DSA:3.40.190.10 112 227 1.4E-28 T 13-10-2018 CS348_07640 7966b0948917794f4c3ce0d1f5825f02 397 Gene3D G3DSA:3.40.190.10 30 274 1.4E-28 T 13-10-2018 CS348_07640 7966b0948917794f4c3ce0d1f5825f02 397 Pfam PF13343 Bacterial extracellular solute-binding protein 59 286 8.3E-31 T 13-10-2018 CS348_19150 9e4f81b29bde97e4475a60a0f6d236a0 382 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 6 382 43.598 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 CS348_19150 9e4f81b29bde97e4475a60a0f6d236a0 382 Pfam PF02684 Lipid-A-disaccharide synthetase 9 377 2.7E-156 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 CS348_19150 9e4f81b29bde97e4475a60a0f6d236a0 382 SUPERFAMILY SSF53756 9 378 6.0E-29 T 13-10-2018 CS348_19150 9e4f81b29bde97e4475a60a0f6d236a0 382 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 1 380 6.2E-190 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 CS348_19400 b07a870f65e20b54e4bddc5a08d00e34 198 Pfam PF00419 Fimbrial protein 36 197 1.4E-9 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_19400 b07a870f65e20b54e4bddc5a08d00e34 198 SUPERFAMILY SSF49401 34 198 7.46E-16 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_19400 b07a870f65e20b54e4bddc5a08d00e34 198 Gene3D G3DSA:2.60.40.1090 33 197 5.5E-17 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_25545 30e9d89c0863e9f954b1858c804ee0ce 287 Pfam PF01051 Initiator Replication protein 16 267 4.1E-18 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CS348_09385 f7bb3221984bdad4bbcc2bc5c2a7aa14 150 PIRSF PIRSF036409 1 146 1.8E-60 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CS348_09385 f7bb3221984bdad4bbcc2bc5c2a7aa14 150 SUPERFAMILY SSF52540 3 140 5.71E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_09385 f7bb3221984bdad4bbcc2bc5c2a7aa14 150 Gene3D G3DSA:3.40.50.300 1 143 2.1E-13 T 13-10-2018 CS348_09385 f7bb3221984bdad4bbcc2bc5c2a7aa14 150 TIGRFAM TIGR02528 EutP: ethanolamine utilization protein, EutP 2 142 8.8E-63 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CS348_09385 f7bb3221984bdad4bbcc2bc5c2a7aa14 150 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 1 141 1.3E-58 T 13-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 CS348_07800 b203e6f8346350644eb1e942b217fbf8 219 Pfam PF09335 SNARE associated Golgi protein 49 176 3.0E-26 T 13-10-2018 IPR032816 SNARE associated Golgi protein CS348_20030 8b6c223703e607177cce02835e2001d2 382 SUPERFAMILY SSF52021 3 144 3.01E-57 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20030 8b6c223703e607177cce02835e2001d2 382 SMART SM01097 3 133 4.4E-91 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20030 8b6c223703e607177cce02835e2001d2 382 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 2.1E-52 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20030 8b6c223703e607177cce02835e2001d2 382 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 49.173 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20030 8b6c223703e607177cce02835e2001d2 382 Gene3D G3DSA:3.50.30.20 2 151 6.9E-63 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.1E-5 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.1E-5 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.1E-5 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 8.0E-154 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CS348_20030 8b6c223703e607177cce02835e2001d2 382 SUPERFAMILY SSF52317 153 378 3.52E-65 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_20030 8b6c223703e607177cce02835e2001d2 382 Gene3D G3DSA:3.40.50.880 152 379 1.9E-79 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_20030 8b6c223703e607177cce02835e2001d2 382 Pfam PF00117 Glutamine amidotransferase class-I 197 372 8.6E-51 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.2E-11 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.2E-11 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.2E-11 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 2.5E-40 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 2.5E-40 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 2.5E-40 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 2.5E-40 T 13-10-2018 CS348_20030 8b6c223703e607177cce02835e2001d2 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 2.5E-40 T 13-10-2018 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 Gene3D G3DSA:1.20.5.1030 66 123 4.9E-16 T 13-10-2018 IPR038379 SecE superfamily CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.9E-20 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 1.0E-41 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 1.0E-41 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 1.0E-41 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 1.0E-41 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CS348_22870 38ca8ef3208c49447b0fe0266484f764 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Pfam PF01568 Molydopterin dinucleotide binding domain 682 794 3.1E-26 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Pfam PF00384 Molybdopterin oxidoreductase 124 569 2.5E-72 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Gene3D G3DSA:3.40.50.740 429 621 3.3E-40 T 13-10-2018 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 SMART SM00926 62 121 1.6E-9 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 SUPERFAMILY SSF50692 635 801 2.94E-38 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 SUPERFAMILY SSF53706 63 684 1.81E-160 T 13-10-2018 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 63 121 5.9E-7 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 718 745 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Gene3D G3DSA:3.40.228.10 333 417 1.4E-16 T 13-10-2018 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Gene3D G3DSA:2.40.40.20 656 801 2.5E-42 T 13-10-2018 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 513 530 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 Gene3D G3DSA:3.40.50.740 60 318 4.7E-85 T 13-10-2018 CS348_06905 24151465dc8c9dcd4ca98cf8bdc7afe4 801 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 24 801 0.0 T 13-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 CS348_07150 4cdb5866ea9c8c7ed8a922833be361c7 287 Pfam PF04228 Putative neutral zinc metallopeptidase 1 283 4.4E-139 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative CS348_07890 6961a6d497339c575b108e1578825d26 297 Pfam PF08338 Domain of unknown function (DUF1731) 249 295 2.6E-18 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 CS348_07890 6961a6d497339c575b108e1578825d26 297 Gene3D G3DSA:3.40.50.720 2 297 3.3E-78 T 13-10-2018 CS348_07890 6961a6d497339c575b108e1578825d26 297 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 292 2.0E-106 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 CS348_07890 6961a6d497339c575b108e1578825d26 297 SUPERFAMILY SSF51735 1 297 8.69E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07890 6961a6d497339c575b108e1578825d26 297 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 215 2.5E-24 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_08410 9099d605fe71b2b870671cb785f60ef2 70 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 2.5E-16 T 13-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 CS348_08410 9099d605fe71b2b870671cb785f60ef2 70 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 2.7E-18 T 13-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 CS348_00105 9099d605fe71b2b870671cb785f60ef2 70 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 2.5E-16 T 13-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 CS348_00105 9099d605fe71b2b870671cb785f60ef2 70 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 2.7E-18 T 13-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Gene3D G3DSA:3.10.20.310 175 264 1.1E-23 T 13-10-2018 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Gene3D G3DSA:3.10.20.310 92 174 3.1E-16 T 13-10-2018 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Gene3D G3DSA:2.40.160.50 426 810 5.0E-162 T 13-10-2018 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Pfam PF01103 Surface antigen 448 810 1.5E-102 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Gene3D G3DSA:3.10.20.310 265 346 2.0E-18 T 13-10-2018 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Gene3D G3DSA:3.10.20.310 347 425 5.1E-26 T 13-10-2018 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 810 26.39 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 PIRSF PIRSF006076 1 810 2.2E-259 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 810 3.4E-288 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Gene3D G3DSA:3.10.20.310 18 91 2.1E-20 T 13-10-2018 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Pfam PF07244 Surface antigen variable number repeat 92 172 4.7E-11 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Pfam PF07244 Surface antigen variable number repeat 266 344 6.4E-12 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Pfam PF07244 Surface antigen variable number repeat 176 263 1.2E-15 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CS348_19175 0a6db9cc55f362dd769633f37cf03362 810 Pfam PF07244 Surface antigen variable number repeat 348 421 1.5E-13 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CS348_00730 443372d741dc851270b8be6b68dab53c 396 PIRSF PIRSF000138 2 379 9.4E-121 T 13-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 CS348_00730 443372d741dc851270b8be6b68dab53c 396 Pfam PF01070 FMN-dependent dehydrogenase 13 375 1.6E-124 T 13-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 CS348_00730 443372d741dc851270b8be6b68dab53c 396 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 13-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 CS348_00730 443372d741dc851270b8be6b68dab53c 396 SUPERFAMILY SSF51395 6 376 1.83E-98 T 13-10-2018 CS348_00730 443372d741dc851270b8be6b68dab53c 396 Gene3D G3DSA:3.20.20.70 3 381 8.4E-125 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00730 443372d741dc851270b8be6b68dab53c 396 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 73.645 T 13-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 CS348_25790 f4ff263371287f002ba498bea954f216 25 TIGRFAM TIGR03475 tap_IncFII_lead: RepA leader peptide Tap 1 25 4.0E-20 T 13-10-2018 IPR012605 RepA1 leader peptide Tap CS348_25790 f4ff263371287f002ba498bea954f216 25 Pfam PF08048 Tap RepA1 leader peptide 1 25 1.6E-19 T 13-10-2018 IPR012605 RepA1 leader peptide Tap CS348_23250 821a29c4bf2844e80ff2ababfeaf3675 346 SUPERFAMILY SSF101478 5 345 2.35E-60 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily CS348_23250 821a29c4bf2844e80ff2ababfeaf3675 346 Pfam PF03747 ADP-ribosylglycohydrolase 10 323 2.2E-53 T 13-10-2018 IPR005502 ADP-ribosylation/Crystallin J1 CS348_23250 821a29c4bf2844e80ff2ababfeaf3675 346 Gene3D G3DSA:1.10.4080.10 4 345 6.3E-65 T 13-10-2018 IPR036705 ADP-ribosylation/Crystallin J1 superfamily CS348_13015 b1df7fcadbb05bc37af3f266e06e54b6 338 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 263 331 6.7E-7 T 13-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related CS348_13015 b1df7fcadbb05bc37af3f266e06e54b6 338 SUPERFAMILY SSF140591 259 330 1.96E-18 T 13-10-2018 CS348_13015 b1df7fcadbb05bc37af3f266e06e54b6 338 Pfam PF07201 HrpJ-like domain 54 200 6.4E-21 T 13-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 CS348_01580 d44b06973c8cdb8e03ed485e1407fd53 108 SMART SM00450 7 102 8.2E-19 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_01580 d44b06973c8cdb8e03ed485e1407fd53 108 Pfam PF00581 Rhodanese-like domain 8 98 2.4E-14 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_01580 d44b06973c8cdb8e03ed485e1407fd53 108 Gene3D G3DSA:3.40.250.10 1 108 6.0E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_01580 d44b06973c8cdb8e03ed485e1407fd53 108 SUPERFAMILY SSF52821 2 99 1.2E-27 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_01580 d44b06973c8cdb8e03ed485e1407fd53 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 30.997 T 13-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 CS348_08890 8274f43546ea9858d9e83cee969f8878 177 SUPERFAMILY SSF49401 40 174 1.84E-12 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_08890 8274f43546ea9858d9e83cee969f8878 177 Gene3D G3DSA:2.60.40.1090 29 175 1.0E-13 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_08890 8274f43546ea9858d9e83cee969f8878 177 Pfam PF00419 Fimbrial protein 31 174 3.1E-7 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_22810 da13d184df822d48c517f3c97dffefc2 377 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 3 368 1.4E-162 T 13-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 CS348_22810 da13d184df822d48c517f3c97dffefc2 377 SMART SM00876 258 361 5.1E-28 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_22810 da13d184df822d48c517f3c97dffefc2 377 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 258 360 1.1E-20 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_22810 da13d184df822d48c517f3c97dffefc2 377 Pfam PF04055 Radical SAM superfamily 82 220 7.2E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_22810 da13d184df822d48c517f3c97dffefc2 377 SUPERFAMILY SSF102114 36 363 1.31E-52 T 13-10-2018 CS348_22810 da13d184df822d48c517f3c97dffefc2 377 Gene3D G3DSA:3.20.20.70 12 365 1.0E-106 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_18760 40b133d201e05bf1ebd62f278cce6694 204 Gene3D G3DSA:3.30.160.20 100 177 2.9E-27 T 13-10-2018 CS348_18760 40b133d201e05bf1ebd62f278cce6694 204 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 115 131 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CS348_18760 40b133d201e05bf1ebd62f278cce6694 204 SUPERFAMILY SSF75620 3 196 5.1E-45 T 13-10-2018 CS348_18760 40b133d201e05bf1ebd62f278cce6694 204 Gene3D G3DSA:3.30.70.1660 4 181 2.9E-27 T 13-10-2018 CS348_18760 40b133d201e05bf1ebd62f278cce6694 204 TIGRFAM TIGR03072 release_prfH: putative peptide chain release factor H 2 201 3.8E-103 T 13-10-2018 IPR017509 Putative peptide chain release factor H CS348_18760 40b133d201e05bf1ebd62f278cce6694 204 Pfam PF00472 RF-1 domain 103 181 1.9E-23 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CS348_23955 b84678efb420162b6218ead50914390d 251 Gene3D G3DSA:3.40.50.150 31 251 4.1E-75 T 13-10-2018 CS348_23955 b84678efb420162b6218ead50914390d 251 SUPERFAMILY SSF53335 18 249 8.36E-52 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_23955 b84678efb420162b6218ead50914390d 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 3.1E-89 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CS348_23955 b84678efb420162b6218ead50914390d 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CS348_23955 b84678efb420162b6218ead50914390d 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 15 250 2.5E-112 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CS348_23955 b84678efb420162b6218ead50914390d 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.138 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CS348_23955 b84678efb420162b6218ead50914390d 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 CS348_15555 1ecaba4dd3fabcf1239a97f32bb881f5 276 SMART SM00644 32 178 3.9E-37 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_15555 1ecaba4dd3fabcf1239a97f32bb881f5 276 Gene3D G3DSA:3.40.80.10 42 192 1.6E-48 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_15555 1ecaba4dd3fabcf1239a97f32bb881f5 276 SUPERFAMILY SSF47090 198 273 1.57E-20 T 13-10-2018 IPR036365 PGBD-like superfamily CS348_15555 1ecaba4dd3fabcf1239a97f32bb881f5 276 Gene3D G3DSA:1.10.101.10 193 276 8.6E-33 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CS348_15555 1ecaba4dd3fabcf1239a97f32bb881f5 276 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 42 179 5.9E-26 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_15555 1ecaba4dd3fabcf1239a97f32bb881f5 276 SUPERFAMILY SSF55846 24 194 2.36E-51 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 2.0E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 243 255 2.0E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 2.0E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 331 348 2.0E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 2.0E-18 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 8.6E-75 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 8.6E-75 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 8.6E-75 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 8.6E-75 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 249 266 8.6E-75 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 PRINTS PR00183 E.coli/Salmonella-type porin signature 284 303 8.6E-75 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 SUPERFAMILY SSF56935 22 380 1.75E-84 T 13-10-2018 CS348_12690 81cb64f7c250726789b73ff599a77210 380 Pfam PF00267 Gram-negative porin 27 380 2.9E-152 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12690 81cb64f7c250726789b73ff599a77210 380 Gene3D G3DSA:2.40.160.10 22 380 2.2E-154 T 13-10-2018 IPR023614 Porin domain superfamily CS348_15715 4efd3e3db4604f96e2a72df372db05a7 181 Pfam PF10721 Protein of unknown function (DUF2514) 12 169 1.8E-41 T 13-10-2018 IPR019659 Protein of unknown function DUF2514 CS348_20065 fe60404416dd727dc71cdd9c799a102d 97 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 5.6E-42 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_20065 fe60404416dd727dc71cdd9c799a102d 97 PIRSF PIRSF002736 1 97 3.1E-41 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_20065 fe60404416dd727dc71cdd9c799a102d 97 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 27.64 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_20065 fe60404416dd727dc71cdd9c799a102d 97 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 1.5E-28 T 13-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein CS348_20065 fe60404416dd727dc71cdd9c799a102d 97 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 10 74 3.0E-30 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 SUPERFAMILY SSF69742 1 158 6.67E-47 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 Gene3D G3DSA:3.30.460.30 1 158 1.3E-56 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 SUPERFAMILY SSF51735 162 315 2.39E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 Gene3D G3DSA:3.40.50.720 161 313 5.1E-45 T 13-10-2018 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 3.5E-49 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 SUPERFAMILY SSF69075 317 417 1.44E-27 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 PIRSF PIRSF000445 1 418 3.1E-155 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 30.827 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 5.0E-48 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 418 2.9E-167 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_10940 bf048632fe8823c47a04fee93ac4428e 418 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 3.3E-24 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 6.0E-108 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 SUPERFAMILY SSF56808 6 225 2.09E-83 T 13-10-2018 IPR023674 Ribosomal protein L1-like CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.9E-53 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 Gene3D G3DSA:3.30.190.20 25 222 1.2E-80 T 13-10-2018 CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.662 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 PIRSF PIRSF002155 1 227 1.2E-78 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_22855 e17050253e80a61f713ce88e8f82cf78 234 Gene3D G3DSA:3.40.50.790 68 159 1.2E-80 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CS348_08615 aa53794fac72be48c00fdb7206cce1c5 349 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 14 348 3.4E-161 T 13-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 CS348_08615 aa53794fac72be48c00fdb7206cce1c5 349 Pfam PF03601 Conserved hypothetical protein 698 18 326 5.4E-114 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 CS348_23940 185ffcaffba15a5aa431d0cf0f29cb0e 84 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 82 24.707 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CS348_23940 185ffcaffba15a5aa431d0cf0f29cb0e 84 Pfam PF02416 mttA/Hcf106 family 4 55 4.1E-15 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 CS348_23940 185ffcaffba15a5aa431d0cf0f29cb0e 84 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 6.5E-21 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CS348_20000 db39642c48ba3c3ae0e0cd2f116aa1bc 405 SUPERFAMILY SSF89796 5 401 1.44E-99 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CS348_20000 db39642c48ba3c3ae0e0cd2f116aa1bc 405 Hamap MF_01050 L-carnitine CoA-transferase [caiB]. 1 405 97.519 T 13-10-2018 IPR023452 L-carnitine CoA-transferase CaiB GO:0009437|GO:0016782 CS348_20000 db39642c48ba3c3ae0e0cd2f116aa1bc 405 Pfam PF02515 CoA-transferase family III 12 378 3.1E-78 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 CS348_20000 db39642c48ba3c3ae0e0cd2f116aa1bc 405 Gene3D G3DSA:3.40.50.10540 11 395 5.9E-137 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CS348_20000 db39642c48ba3c3ae0e0cd2f116aa1bc 405 Gene3D G3DSA:3.30.1540.10 228 330 5.9E-137 T 13-10-2018 CS348_07280 c86219f7a40b77fd2d37b199775f80db 408 PIRSF PIRSF019466 1 407 1.4E-128 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 CS348_07280 c86219f7a40b77fd2d37b199775f80db 408 Pfam PF04346 Ethanolamine utilisation protein, EutH 3 391 1.7E-141 T 13-10-2018 IPR007441 Ethanolamine utilisation protein EutH GO:0016021|GO:0034228|GO:0034229 CS348_09560 728864d13a8ab0e361630985781822ae 225 Pfam PF02361 Cobalt transport protein 10 221 9.3E-60 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component CS348_09560 728864d13a8ab0e361630985781822ae 225 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 16 216 2.4E-57 T 13-10-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 SUPERFAMILY SSF141729 52 155 2.35E-24 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 Pfam PF00577 Outer membrane usher protein 179 745 1.5E-171 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 Gene3D G3DSA:2.60.40.2610 660 749 8.8E-24 T 13-10-2018 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 Gene3D G3DSA:2.60.40.3110 250 338 2.0E-32 T 13-10-2018 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 Gene3D G3DSA:3.10.20.410 24 139 1.2E-16 T 13-10-2018 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 Pfam PF13954 PapC N-terminal domain 26 163 5.9E-31 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_08900 78ba4722cad01e25510ef4bf34e7adf4 828 Pfam PF13953 PapC C-terminal domain 757 816 1.4E-10 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_18725 35d8cf039349f9b818b34f113dde3821 416 Gene3D G3DSA:3.40.605.10 14 410 8.4E-164 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 415 41.548 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 SUPERFAMILY SSF53720 3 415 8.9E-117 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 322 343 - T 13-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 PIRSF PIRSF000151 1 416 3.4E-175 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 9 405 3.6E-191 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 Pfam PF00171 Aldehyde dehydrogenase family 8 287 4.5E-17 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_18725 35d8cf039349f9b818b34f113dde3821 416 Gene3D G3DSA:3.40.309.10 222 373 8.4E-164 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_21015 557f2fbdbb1775154498576dc8150b90 456 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 228 235 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_21015 557f2fbdbb1775154498576dc8150b90 456 Pfam PF00171 Aldehyde dehydrogenase family 3 452 5.4E-139 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_21015 557f2fbdbb1775154498576dc8150b90 456 Gene3D G3DSA:3.40.605.10 8 447 1.5E-150 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_21015 557f2fbdbb1775154498576dc8150b90 456 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 256 267 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_21015 557f2fbdbb1775154498576dc8150b90 456 SUPERFAMILY SSF53720 3 455 7.85E-145 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_21015 557f2fbdbb1775154498576dc8150b90 456 Gene3D G3DSA:3.40.309.10 232 421 1.5E-150 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_03365 1909ef4c679756a492d9cd4b783d7d06 130 SUPERFAMILY SSF101756 31 127 3.27E-36 T 13-10-2018 IPR036700 Bacterial OB-fold superfamily CS348_03365 1909ef4c679756a492d9cd4b783d7d06 130 Gene3D G3DSA:2.40.50.200 22 130 3.4E-46 T 13-10-2018 IPR036700 Bacterial OB-fold superfamily CS348_03365 1909ef4c679756a492d9cd4b783d7d06 130 Pfam PF04076 Bacterial OB fold (BOF) protein 25 127 1.9E-45 T 13-10-2018 IPR005220 Bacterial OB-fold CS348_03365 1909ef4c679756a492d9cd4b783d7d06 130 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 2 129 1.6E-62 T 13-10-2018 IPR016052 Bacteriophage 933W, L0136 CS348_16815 3030d221d58e266409432308f51504db 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_16815 3030d221d58e266409432308f51504db 434 Pfam PF07690 Major Facilitator Superfamily 22 379 2.5E-28 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_16815 3030d221d58e266409432308f51504db 434 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 23 413 1.2E-143 T 13-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 CS348_16815 3030d221d58e266409432308f51504db 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 92 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_16815 3030d221d58e266409432308f51504db 434 SUPERFAMILY SSF103473 17 422 1.83E-64 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_16815 3030d221d58e266409432308f51504db 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 311 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_16815 3030d221d58e266409432308f51504db 434 Gene3D G3DSA:1.20.1250.20 16 433 2.0E-59 T 13-10-2018 CS348_17455 5d313826229b7249aefedef7ff378e4f 780 Gene3D G3DSA:2.20.70.120 683 714 1.4E-9 T 13-10-2018 CS348_17455 5d313826229b7249aefedef7ff378e4f 780 Pfam PF03406 Phage tail fibre repeat 259 297 4.1E-15 T 13-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 CS348_17455 5d313826229b7249aefedef7ff378e4f 780 Pfam PF08400 Prophage tail fibre N-terminal 1 134 1.7E-73 T 13-10-2018 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal CS348_17455 5d313826229b7249aefedef7ff378e4f 780 SUPERFAMILY SSF49464 5 80 2.39E-7 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily CS348_17455 5d313826229b7249aefedef7ff378e4f 780 Gene3D G3DSA:2.60.40.1120 5 98 2.3E-8 T 13-10-2018 CS348_25180 c229176e68da16d9b20ac7fc896b6c3b 66 Gene3D G3DSA:1.20.120.910 4 65 1.9E-16 T 13-10-2018 CS348_25180 c229176e68da16d9b20ac7fc896b6c3b 66 SUPERFAMILY SSF57716 33 64 2.28E-7 T 13-10-2018 CS348_25180 c229176e68da16d9b20ac7fc896b6c3b 66 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 30 62 7.0E-12 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CS348_25180 c229176e68da16d9b20ac7fc896b6c3b 66 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 63 1.4E-17 T 13-10-2018 IPR012783 Zinc finger, C4 DksA/TraR-type CS348_08055 522a7f02706696a151a860d1c25f9df8 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.413 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CS348_08055 522a7f02706696a151a860d1c25f9df8 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 8.1E-21 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CS348_17905 838655dbee8410118bb824dbe6d942bf 323 ProSitePatterns PS01174 Lipolytic enzymes "G-D-X-G" family, putative serine active site. 159 171 - T 13-10-2018 IPR033140 Lipase, GDXG, putative serine active site CS348_17905 838655dbee8410118bb824dbe6d942bf 323 Hamap MF_01958 Acetyl esterase [aes]. 1 319 70.211 T 13-10-2018 IPR023508 Acetyl esterase GO:0005737|GO:0052689 CS348_17905 838655dbee8410118bb824dbe6d942bf 323 SUPERFAMILY SSF53474 29 315 1.28E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_17905 838655dbee8410118bb824dbe6d942bf 323 Pfam PF07859 alpha/beta hydrolase fold 88 295 4.7E-52 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 CS348_17905 838655dbee8410118bb824dbe6d942bf 323 Gene3D G3DSA:3.40.50.1820 1 323 9.7E-101 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_24095 68906654e975f7eeb7796a837f168b59 106 Gene3D G3DSA:3.30.920.10 1 106 5.0E-42 T 13-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_24095 68906654e975f7eeb7796a837f168b59 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 7.7E-44 T 13-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_24095 68906654e975f7eeb7796a837f168b59 106 Pfam PF01491 Frataxin-like domain 1 102 8.2E-30 T 13-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_24095 68906654e975f7eeb7796a837f168b59 106 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 105 29.218 T 13-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_24095 68906654e975f7eeb7796a837f168b59 106 SUPERFAMILY SSF55387 1 105 3.49E-40 T 13-10-2018 CS348_24095 68906654e975f7eeb7796a837f168b59 106 SMART SM01219 1 106 2.7E-57 T 13-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_24095 68906654e975f7eeb7796a837f168b59 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 13-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CS348_17175 6028ac4da6efcfd1d6e0bbbdaf0231b3 255 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 3 187 1.4E-19 T 13-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 SMART SM00155 285 312 10.0 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 SMART SM00155 108 135 2.8E-7 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 Pfam PF13091 PLD-like domain 26 162 3.6E-16 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 Pfam PF13091 PLD-like domain 214 336 3.3E-26 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 SUPERFAMILY SSF56024 180 358 3.59E-39 T 13-10-2018 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 Gene3D G3DSA:3.30.870.10 3 194 2.2E-36 T 13-10-2018 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 Hamap MF_01917 Cardiolipin synthase B [clsB]. 2 383 51.935 T 13-10-2018 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 SUPERFAMILY SSF56024 4 162 2.04E-39 T 13-10-2018 CS348_16265 c304fb608683cdff802ea58ecb61a393 413 Gene3D G3DSA:3.30.870.10 202 342 1.1E-23 T 13-10-2018 CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 SUPERFAMILY SSF53850 93 297 4.89E-18 T 13-10-2018 CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 70 2.0E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 Gene3D G3DSA:3.40.190.10 96 286 5.6E-15 T 13-10-2018 CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 SUPERFAMILY SSF46785 8 92 8.84E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 Pfam PF03466 LysR substrate binding domain 134 298 4.0E-13 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 Gene3D G3DSA:1.10.10.10 3 92 9.4E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_17215 f81e3d8ae319e87a8ca9aef45e909159 301 Gene3D G3DSA:3.40.190.10 173 271 5.6E-15 T 13-10-2018 CS348_21025 c51d17d924fef879f3f381f63a3fb3fc 413 SUPERFAMILY SSF103473 19 403 2.22E-47 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_21025 c51d17d924fef879f3f381f63a3fb3fc 413 Gene3D G3DSA:1.20.1720.10 19 405 1.3E-64 T 13-10-2018 CS348_21025 c51d17d924fef879f3f381f63a3fb3fc 413 Pfam PF07690 Major Facilitator Superfamily 26 356 2.2E-31 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_21025 c51d17d924fef879f3f381f63a3fb3fc 413 ProSitePatterns PS00216 Sugar transport proteins signature 1. 71 88 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 50 64 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 211 225 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 154 172 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 33 47 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 86 104 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 11 28 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 66 81 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 183 197 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PRINTS PR01593 Salmonella type III secretion SopE effector protein signature 119 134 4.1E-84 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 Pfam PF05364 Salmonella type III secretion SopE effector N-terminus 2 75 3.8E-51 T 13-10-2018 IPR016018 Guanine nucleotide exchange factor SopE, N-terminal domain CS348_10535 a25f5f272078f26720569a856bf37d28 240 SUPERFAMILY SSF81832 73 239 7.85E-79 T 13-10-2018 IPR035949 SopE-like, GEF domain superfamily CS348_10535 a25f5f272078f26720569a856bf37d28 240 Gene3D G3DSA:1.10.4120.10 73 240 2.5E-82 T 13-10-2018 IPR035949 SopE-like, GEF domain superfamily CS348_10535 a25f5f272078f26720569a856bf37d28 240 Pfam PF07487 SopE GEF domain 76 240 2.2E-114 T 13-10-2018 IPR016019 Guanine nucleotide exchange factor SopE, GEF domain GO:0005085|GO:0009405|GO:0031532|GO:0090630 CS348_10535 a25f5f272078f26720569a856bf37d28 240 PIRSF PIRSF034781 1 240 3.4E-115 T 13-10-2018 IPR005414 Guanine nucleotide exchange factor SopE GO:0005085|GO:0005576|GO:0009405|GO:0031532|GO:0090630 CS348_15985 01bce86a716d49aab533201b01b8272e 271 Gene3D G3DSA:3.40.50.1000 4 255 2.6E-76 T 13-10-2018 IPR023214 HAD superfamily CS348_15985 01bce86a716d49aab533201b01b8272e 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 3.2E-56 T 13-10-2018 IPR000150 Cof family GO:0016787 CS348_15985 01bce86a716d49aab533201b01b8272e 271 ProSitePatterns PS01229 Hypothetical cof family signature 2. 213 235 - T 13-10-2018 CS348_15985 01bce86a716d49aab533201b01b8272e 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 1.6E-51 T 13-10-2018 CS348_15985 01bce86a716d49aab533201b01b8272e 271 Gene3D G3DSA:3.30.1240.10 83 189 2.6E-76 T 13-10-2018 CS348_15985 01bce86a716d49aab533201b01b8272e 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 232 3.9E-20 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_15985 01bce86a716d49aab533201b01b8272e 271 SUPERFAMILY SSF56784 1 263 2.8E-61 T 13-10-2018 IPR036412 HAD-like superfamily CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 7.0E-20 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 7.0E-20 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 7.0E-20 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 4.5E-33 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 SMART SM00411 1 90 1.5E-42 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 SUPERFAMILY SSF47729 1 90 3.39E-32 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_18110 e805b500ec969fcfff3d8a4857df1e08 90 Gene3D G3DSA:4.10.520.10 1 90 9.7E-37 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_01025 894df0ce220b761ef7735a8141d26591 193 Pfam PF03352 Methyladenine glycosylase 6 182 6.9E-83 T 13-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 CS348_01025 894df0ce220b761ef7735a8141d26591 193 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 2 181 1.3E-91 T 13-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 CS348_01025 894df0ce220b761ef7735a8141d26591 193 Gene3D G3DSA:1.10.340.30 1 187 1.9E-92 T 13-10-2018 CS348_01025 894df0ce220b761ef7735a8141d26591 193 SUPERFAMILY SSF48150 1 183 1.59E-83 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CS348_20200 6d58c1b30f34eb608f569f95a30d41b5 572 Pfam PF17425 Arylsulfotransferase Ig-like domain 54 136 1.8E-18 T 13-10-2018 IPR035391 Arylsulfotransferase, Ig-like domain CS348_20200 6d58c1b30f34eb608f569f95a30d41b5 572 Pfam PF05935 Arylsulfotransferase (ASST) 155 550 6.0E-108 T 13-10-2018 IPR010262 Arylsulfotransferase, bacteria GO:0004062 CS348_20200 6d58c1b30f34eb608f569f95a30d41b5 572 Gene3D G3DSA:2.60.40.3100 44 139 4.5E-6 T 13-10-2018 IPR038477 Arylsulfotransferase, N-terminal domain superfamily CS348_21515 a180a1f50185ea38edc80a5c5f3b7e0f 277 Pfam PF01380 SIS domain 144 270 1.3E-26 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_21515 a180a1f50185ea38edc80a5c5f3b7e0f 277 SUPERFAMILY SSF53697 113 274 1.74E-28 T 13-10-2018 CS348_21515 a180a1f50185ea38edc80a5c5f3b7e0f 277 Pfam PF01418 Helix-turn-helix domain, rpiR family 12 81 3.9E-13 T 13-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 CS348_21515 a180a1f50185ea38edc80a5c5f3b7e0f 277 Gene3D G3DSA:3.40.50.10490 114 277 3.4E-36 T 13-10-2018 CS348_21515 a180a1f50185ea38edc80a5c5f3b7e0f 277 Gene3D G3DSA:1.10.10.10 6 84 4.9E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21515 a180a1f50185ea38edc80a5c5f3b7e0f 277 SUPERFAMILY SSF46689 13 86 8.24E-20 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_00250 a4d2d5736712cca44d8b14f632ddd740 500 Pfam PF05231 MASE1 12 275 3.4E-13 T 13-10-2018 IPR007895 MASE1 CS348_00250 a4d2d5736712cca44d8b14f632ddd740 500 SUPERFAMILY SSF55874 377 496 2.75E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00250 a4d2d5736712cca44d8b14f632ddd740 500 SMART SM00387 409 499 4.3E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_00250 a4d2d5736712cca44d8b14f632ddd740 500 Gene3D G3DSA:3.30.565.10 375 498 3.1E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_00250 a4d2d5736712cca44d8b14f632ddd740 500 Pfam PF07730 Histidine kinase 305 370 9.4E-15 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CS348_00250 a4d2d5736712cca44d8b14f632ddd740 500 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 413 497 2.3E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_02075 4a3a5d27bc8e17ce4638d4aeec0903ff 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.076 T 13-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid CS348_02075 4a3a5d27bc8e17ce4638d4aeec0903ff 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 3.6E-26 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02075 4a3a5d27bc8e17ce4638d4aeec0903ff 101 SUPERFAMILY SSF57716 2 101 3.42E-37 T 13-10-2018 CS348_02075 4a3a5d27bc8e17ce4638d4aeec0903ff 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 13-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02075 4a3a5d27bc8e17ce4638d4aeec0903ff 101 Gene3D G3DSA:4.10.830.10 41 101 5.4E-23 T 13-10-2018 CS348_12615 436223547113ac1636d7a2d249ebf4f2 417 ProSitePatterns PS00216 Sugar transport proteins signature 1. 91 107 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_12615 436223547113ac1636d7a2d249ebf4f2 417 Pfam PF07690 Major Facilitator Superfamily 41 261 1.1E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12615 436223547113ac1636d7a2d249ebf4f2 417 Gene3D G3DSA:1.20.1250.20 33 411 4.1E-47 T 13-10-2018 CS348_12615 436223547113ac1636d7a2d249ebf4f2 417 SUPERFAMILY SSF103473 25 414 6.54E-62 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_02775 270e733f92b4dfc072572e092eefa61c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 7.8E-44 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CS348_02775 270e733f92b4dfc072572e092eefa61c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 7.8E-44 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CS348_02775 270e733f92b4dfc072572e092eefa61c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 7.8E-44 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CS348_02775 270e733f92b4dfc072572e092eefa61c 110 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 7.8E-44 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CS348_02775 270e733f92b4dfc072572e092eefa61c 110 Pfam PF03840 Preprotein translocase SecG subunit 5 72 4.1E-22 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CS348_02775 270e733f92b4dfc072572e092eefa61c 110 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 74 2.8E-27 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CS348_17715 19819b66b047ea1148f3d45931306907 230 SUPERFAMILY SSF49584 147 225 3.4E-22 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_17715 19819b66b047ea1148f3d45931306907 230 SUPERFAMILY SSF49354 22 145 3.66E-38 T 13-10-2018 IPR008962 PapD-like superfamily CS348_17715 19819b66b047ea1148f3d45931306907 230 Gene3D G3DSA:2.60.40.10 27 143 9.6E-41 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_17715 19819b66b047ea1148f3d45931306907 230 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 145 2.9E-39 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_17715 19819b66b047ea1148f3d45931306907 230 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 99 116 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_17715 19819b66b047ea1148f3d45931306907 230 Gene3D G3DSA:2.60.40.10 147 229 1.1E-26 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_17715 19819b66b047ea1148f3d45931306907 230 PRINTS PR00969 Pili chaperone signature 162 177 1.8E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_17715 19819b66b047ea1148f3d45931306907 230 PRINTS PR00969 Pili chaperone signature 27 36 1.8E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_17715 19819b66b047ea1148f3d45931306907 230 PRINTS PR00969 Pili chaperone signature 100 117 1.8E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_17715 19819b66b047ea1148f3d45931306907 230 PRINTS PR00969 Pili chaperone signature 127 142 1.8E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_17715 19819b66b047ea1148f3d45931306907 230 PRINTS PR00969 Pili chaperone signature 72 93 1.8E-35 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_17715 19819b66b047ea1148f3d45931306907 230 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 222 1.1E-12 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_02970 74b6df3ec6893711f14d16a5600d6464 381 Gene3D G3DSA:3.40.50.10350 2 357 2.0E-141 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold CS348_02970 74b6df3ec6893711f14d16a5600d6464 381 Pfam PF02595 Glycerate kinase family 3 373 4.8E-146 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_02970 74b6df3ec6893711f14d16a5600d6464 381 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 1.3E-167 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_02970 74b6df3ec6893711f14d16a5600d6464 381 SUPERFAMILY SSF110738 1 375 8.63E-139 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 CS348_02970 74b6df3ec6893711f14d16a5600d6464 381 PIRSF PIRSF006078 1 377 5.6E-138 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 CS348_02970 74b6df3ec6893711f14d16a5600d6464 381 Gene3D G3DSA:3.90.1510.10 42 276 2.0E-141 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 CS348_14045 c3b410233c1d5cac3d10cae2cfba34fb 262 Pfam PF01909 Nucleotidyltransferase domain 30 95 4.0E-5 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 CS348_14045 c3b410233c1d5cac3d10cae2cfba34fb 262 Pfam PF13427 Domain of unknown function (DUF4111) 153 254 1.2E-27 T 13-10-2018 IPR025184 Domain of unknown function DUF4111 CS348_14045 c3b410233c1d5cac3d10cae2cfba34fb 262 Gene3D G3DSA:3.30.460.10 10 96 3.0E-6 T 13-10-2018 CS348_14045 c3b410233c1d5cac3d10cae2cfba34fb 262 PIRSF PIRSF000819 12 257 1.7E-51 T 13-10-2018 IPR024172 Streptomycin 3''-adenylyltransferase GO:0009012|GO:0046677 CS348_14045 c3b410233c1d5cac3d10cae2cfba34fb 262 SUPERFAMILY SSF81301 14 117 1.8E-10 T 13-10-2018 CS348_18095 4530a46744797fd292de35b8bc028f14 132 Pfam PF13279 Thioesterase-like superfamily 11 126 8.0E-17 T 13-10-2018 CS348_18095 4530a46744797fd292de35b8bc028f14 132 PIRSF PIRSF003230 1 132 2.5E-23 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CS348_18095 4530a46744797fd292de35b8bc028f14 132 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 118 2.6E-36 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CS348_18095 4530a46744797fd292de35b8bc028f14 132 SUPERFAMILY SSF54637 3 129 5.65E-39 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_18095 4530a46744797fd292de35b8bc028f14 132 Gene3D G3DSA:3.10.129.10 1 132 9.6E-39 T 13-10-2018 CS348_06100 b7db7d81108095eb43c60547a7ec1962 52 Pfam PF01679 Proteolipid membrane potential modulator 3 48 5.6E-18 T 13-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 CS348_06100 b7db7d81108095eb43c60547a7ec1962 52 ProSitePatterns PS01309 Uncharacterized protein family UPF0057 signature. 7 22 - T 13-10-2018 IPR000612 Proteolipid membrane potential modulator GO:0016021 CS348_09465 6d0413038d610571069b4ad580691162 554 Pfam PF02286 Dehydratase large subunit 1 551 0.0 T 13-10-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0016836|GO:0031419 CS348_09465 6d0413038d610571069b4ad580691162 554 Gene3D G3DSA:3.20.20.350 1 554 0.0 T 13-10-2018 IPR036999 Diol/glycerol dehydratase, large subunit superfamily GO:0016836|GO:0031419 CS348_09465 6d0413038d610571069b4ad580691162 554 SUPERFAMILY SSF51703 1 553 1.69E-293 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 CS348_09465 6d0413038d610571069b4ad580691162 554 ProDom PD025428 SUBUNIT GLYCEROL DEHYDRATASE LARGE LYASE DHAB ALPHA DIOL B12-DEPENDENT METABOLISM 8 549 0.0 T 13-10-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0016836|GO:0031419 CS348_09465 6d0413038d610571069b4ad580691162 554 PIRSF PIRSF018507 1 554 0.0 T 13-10-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0016836|GO:0031419 CS348_14375 7aa09393d980027b263cf742509c31b6 212 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 4 210 34.5 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB CS348_14375 7aa09393d980027b263cf742509c31b6 212 Pfam PF13036 Peptidoglycan-synthase activator LpoB 72 208 1.7E-37 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB CS348_14375 7aa09393d980027b263cf742509c31b6 212 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 6 211 1.1E-60 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB CS348_14375 7aa09393d980027b263cf742509c31b6 212 Gene3D G3DSA:3.40.50.10610 75 212 4.1E-57 T 13-10-2018 CS348_07845 369832cffdba6596d5e0bbe616f9b993 367 Gene3D G3DSA:3.20.20.10 11 224 3.4E-22 T 13-10-2018 IPR029066 PLP-binding barrel CS348_07845 369832cffdba6596d5e0bbe616f9b993 367 Pfam PF01168 Alanine racemase, N-terminal domain 8 222 3.8E-17 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CS348_07845 369832cffdba6596d5e0bbe616f9b993 367 SUPERFAMILY SSF51419 9 224 7.59E-26 T 13-10-2018 IPR029066 PLP-binding barrel CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 Pfam PF04225 Opacity-associated protein A LysM-like domain 96 170 1.1E-7 T 13-10-2018 IPR007340 Opacity-associated protein A CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 SUPERFAMILY SSF51261 166 407 4.66E-69 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 SMART SM00257 97 142 4.5E-6 T 13-10-2018 IPR018392 LysM domain CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 2.4E-8 T 13-10-2018 IPR013731 Opacity-associated protein A, N-terminal CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 Gene3D G3DSA:3.10.450.350 179 281 7.6E-31 T 13-10-2018 CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 Gene3D G3DSA:2.70.70.10 283 412 1.4E-48 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 Gene3D G3DSA:3.10.450.350 86 174 1.0E-12 T 13-10-2018 CS348_10290 5119cda29287e4d2a6b73bdae299c6a9 439 Pfam PF01551 Peptidase family M23 312 406 9.9E-33 T 13-10-2018 IPR016047 Peptidase M23 CS348_16260 ac69894ae6ae66c78bddc6f15ee28353 252 Gene3D G3DSA:3.60.10.10 9 252 9.7E-42 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_16260 ac69894ae6ae66c78bddc6f15ee28353 252 SUPERFAMILY SSF56219 7 250 5.1E-53 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_16260 ac69894ae6ae66c78bddc6f15ee28353 252 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 33 243 8.3E-14 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CS348_03810 13f74f299f0fb8fb3c7abe7c2938a7f8 178 SUPERFAMILY SSF50249 5 162 1.27E-59 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_03810 13f74f299f0fb8fb3c7abe7c2938a7f8 178 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 38.658 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_03810 13f74f299f0fb8fb3c7abe7c2938a7f8 178 Gene3D G3DSA:2.40.50.140 2 144 5.8E-50 T 13-10-2018 CS348_03810 13f74f299f0fb8fb3c7abe7c2938a7f8 178 Pfam PF00436 Single-strand binding protein family 6 111 8.6E-42 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CS348_03810 13f74f299f0fb8fb3c7abe7c2938a7f8 178 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 162 1.0E-58 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_16685 0dbfd43358bb50dd1fe5eddbc7ab89c9 244 SUPERFAMILY SSF88713 1 242 4.22E-91 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CS348_16685 0dbfd43358bb50dd1fe5eddbc7ab89c9 244 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 42.672 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 CS348_16685 0dbfd43358bb50dd1fe5eddbc7ab89c9 244 Gene3D G3DSA:3.20.20.370 1 244 8.5E-102 T 13-10-2018 CS348_16685 0dbfd43358bb50dd1fe5eddbc7ab89c9 244 Pfam PF03746 LamB/YcsF family 3 235 1.4E-92 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 Gene3D G3DSA:3.40.50.150 1 220 1.7E-46 T 13-10-2018 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 Pfam PF01555 DNA methylase 21 199 2.8E-32 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 144 161 4.5E-23 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 20 34 4.5E-23 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 54 74 4.5E-23 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 186 206 4.5E-23 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 163 181 4.5E-23 T 13-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 24 30 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_24720 2dbb81259b0b60ee00d5eac7af56f318 226 SUPERFAMILY SSF53335 3 208 1.23E-50 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_12635 1f099500b5188945a3e209f61ba69818 109 Gene3D G3DSA:1.10.3730.20 7 109 3.2E-27 T 13-10-2018 CS348_12635 1f099500b5188945a3e209f61ba69818 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 32.55 T 13-10-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 CS348_12635 1f099500b5188945a3e209f61ba69818 109 Pfam PF00893 Small Multidrug Resistance protein 5 99 6.5E-28 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CS348_12635 1f099500b5188945a3e209f61ba69818 109 SUPERFAMILY SSF103481 12 108 1.7E-16 T 13-10-2018 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 PRINTS PR00969 Pili chaperone signature 113 130 1.1E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 PRINTS PR00969 Pili chaperone signature 85 106 1.1E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 PRINTS PR00969 Pili chaperone signature 39 48 1.1E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 PRINTS PR00969 Pili chaperone signature 135 150 1.1E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 PRINTS PR00969 Pili chaperone signature 171 186 1.1E-29 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 39 153 3.9E-31 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 SUPERFAMILY SSF49354 33 153 7.85E-34 T 13-10-2018 IPR008962 PapD-like superfamily CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 112 129 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 Gene3D G3DSA:2.60.40.10 155 238 7.4E-28 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 SUPERFAMILY SSF49584 147 239 4.06E-9 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_22065 c0624475becd6f1cc980097ef8879dbc 264 Gene3D G3DSA:2.60.40.10 39 151 2.7E-39 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 PRINTS PR00340 P-II protein signature 2 17 2.3E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 PRINTS PR00340 P-II protein signature 52 75 2.3E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 PRINTS PR00340 P-II protein signature 23 41 2.3E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 PRINTS PR00340 P-II protein signature 83 103 2.3E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 SMART SM00938 4 105 4.1E-68 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.1E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 Gene3D G3DSA:3.30.70.120 1 112 1.4E-48 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 SUPERFAMILY SSF54913 1 112 8.58E-47 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 PIRSF PIRSF039144 1 112 1.2E-57 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_06745 8ceb698f0aa0b9491fc60d01c78bde64 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 13-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 Gene3D G3DSA:2.40.160.10 23 372 5.8E-145 T 13-10-2018 IPR023614 Porin domain superfamily CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 Pfam PF00267 Gram-negative porin 28 372 1.9E-132 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 327 343 - T 13-10-2018 IPR013793 Porin, Gram-negative type, conserved site CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 246 258 2.5E-14 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 157 168 2.5E-14 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 327 344 2.5E-14 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 100 110 2.5E-14 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 2.5E-14 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 SUPERFAMILY SSF56935 23 372 3.92E-79 T 13-10-2018 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 3.6E-64 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 3.6E-64 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00183 E.coli/Salmonella-type porin signature 252 269 3.6E-64 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00183 E.coli/Salmonella-type porin signature 283 302 3.6E-64 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00183 E.coli/Salmonella-type porin signature 155 177 3.6E-64 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_12385 3db292540416377d0fa2eb9dbb1fd07c 372 PRINTS PR00183 E.coli/Salmonella-type porin signature 100 122 3.6E-64 T 13-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 CS348_17770 6939837e276dba37c674eabaef09d826 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 130.547 T 13-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 CS348_17770 6939837e276dba37c674eabaef09d826 240 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 4 203 2.4E-8 T 13-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 CS348_17770 6939837e276dba37c674eabaef09d826 240 SUPERFAMILY SSF56300 3 223 6.15E-29 T 13-10-2018 CS348_17770 6939837e276dba37c674eabaef09d826 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 231 4.0E-111 T 13-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 CS348_09425 f86cd04f12226c425dcca0731fd8d49c 163 Pfam PF15953 Putative propanediol utilisation 7 158 6.8E-60 T 13-10-2018 IPR030992 Microcompartment protein PduM GO:0005198 CS348_09425 f86cd04f12226c425dcca0731fd8d49c 163 TIGRFAM TIGR04493 microcomp_PduM: microcompartment protein PduM 7 159 1.4E-61 T 13-10-2018 IPR030992 Microcompartment protein PduM GO:0005198 CS348_04050 f2a801e17dc0dd881e1b87caf7b922fc 599 Gene3D G3DSA:2.40.160.50 203 598 5.8E-58 T 13-10-2018 CS348_04050 f2a801e17dc0dd881e1b87caf7b922fc 599 Pfam PF08479 POTRA domain, ShlB-type 91 168 6.7E-13 T 13-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type CS348_04050 f2a801e17dc0dd881e1b87caf7b922fc 599 Gene3D G3DSA:3.10.20.310 79 168 4.5E-16 T 13-10-2018 CS348_04050 f2a801e17dc0dd881e1b87caf7b922fc 599 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 236 539 4.6E-12 T 13-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal CS348_16995 1e34f218ded72110a95fac9b08df8959 343 Pfam PF06144 DNA polymerase III, delta subunit 21 190 8.4E-45 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 CS348_16995 1e34f218ded72110a95fac9b08df8959 343 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 338 9.7E-72 T 13-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_16995 1e34f218ded72110a95fac9b08df8959 343 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 6.2E-106 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 CS348_16995 1e34f218ded72110a95fac9b08df8959 343 Gene3D G3DSA:1.10.8.60 143 213 1.2E-25 T 13-10-2018 CS348_16995 1e34f218ded72110a95fac9b08df8959 343 Gene3D G3DSA:3.40.50.300 1 140 5.3E-50 T 13-10-2018 CS348_16995 1e34f218ded72110a95fac9b08df8959 343 SUPERFAMILY SSF52540 1 210 1.18E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16995 1e34f218ded72110a95fac9b08df8959 343 Gene3D G3DSA:1.20.272.10 214 343 6.3E-51 T 13-10-2018 CS348_16995 1e34f218ded72110a95fac9b08df8959 343 SUPERFAMILY SSF48019 212 334 7.99E-35 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CS348_24550 7309fde23c6ab9d7f8e59fe87ab84e5e 257 SUPERFAMILY SSF52540 11 243 3.87E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24550 7309fde23c6ab9d7f8e59fe87ab84e5e 257 SMART SM00382 35 237 8.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_24550 7309fde23c6ab9d7f8e59fe87ab84e5e 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_24550 7309fde23c6ab9d7f8e59fe87ab84e5e 257 Pfam PF00005 ABC transporter 26 181 4.5E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_24550 7309fde23c6ab9d7f8e59fe87ab84e5e 257 Gene3D G3DSA:3.40.50.300 9 255 9.3E-68 T 13-10-2018 CS348_24550 7309fde23c6ab9d7f8e59fe87ab84e5e 257 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 11 257 4.9E-121 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 SUPERFAMILY SSF53681 117 226 1.64E-25 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 223 5.1E-46 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 80 88 - T 13-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 189 199 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 Gene3D G3DSA:3.40.50.1860 4 221 7.3E-90 T 13-10-2018 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 222 2.6E-56 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 Gene3D G3DSA:3.40.50.1860 106 214 7.3E-90 T 13-10-2018 CS348_21060 aa0a587bb6e22d0a816fc479a1153bc9 244 SUPERFAMILY SSF53681 4 110 1.64E-31 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Pfam PF00175 Oxidoreductase NAD-binding domain 457 563 1.6E-21 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Gene3D G3DSA:3.40.50.80 445 599 2.4E-58 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 SUPERFAMILY SSF52218 60 210 3.83E-42 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 11 599 2.9E-282 T 13-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 494 505 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 548 556 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 456 475 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 270 280 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 481 490 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 419 428 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 386 393 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 525 541 7.4E-30 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 SUPERFAMILY SSF63380 227 446 1.33E-63 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00369 Flavodoxin signature 65 78 3.2E-13 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00369 Flavodoxin signature 169 188 3.2E-13 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00369 Flavodoxin signature 113 124 3.2E-13 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PRINTS PR00369 Flavodoxin signature 145 155 3.2E-13 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Gene3D G3DSA:1.20.990.10 280 384 3.8E-79 T 13-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Pfam PF00258 Flavodoxin 67 196 6.6E-30 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Pfam PF00667 FAD binding domain 230 424 2.7E-23 T 13-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Gene3D G3DSA:2.40.30.10 232 439 3.8E-79 T 13-10-2018 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Gene3D G3DSA:3.40.50.360 54 219 1.8E-45 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 599 52.494 T 13-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 SUPERFAMILY SSF52343 444 599 1.57E-51 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_05285 f1653da43a8da9566c09bfa2020b570b 599 PIRSF PIRSF000207 1 599 3.5E-278 T 13-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CS348_03835 9a259ada3b8b16347cba98699608d90a 527 Pfam PF00263 Bacterial type II and III secretion system protein 354 522 2.7E-11 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CS348_03835 9a259ada3b8b16347cba98699608d90a 527 TIGRFAM TIGR02520 pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family 27 520 3.4E-147 T 13-10-2018 IPR013359 Pilus formation type IVB, outer membrane PilN CS348_03835 9a259ada3b8b16347cba98699608d90a 527 Pfam PF07655 Secretin N-terminal domain 172 252 2.7E-14 T 13-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 CS348_11455 c68430ff146921cbdd2f0ac60e68a921 99 Gene3D G3DSA:3.90.210.10 1 85 6.7E-13 T 13-10-2018 CS348_11455 c68430ff146921cbdd2f0ac60e68a921 99 SUPERFAMILY SSF56399 1 68 8.92E-9 T 13-10-2018 CS348_14060 0fcaa17cd5dcf806a8ca3308d3fa83da 108 Gene3D G3DSA:1.20.1270.360 1 108 2.4E-32 T 13-10-2018 CS348_14060 0fcaa17cd5dcf806a8ca3308d3fa83da 108 Pfam PF03860 Domain of Unknown Function (DUF326) 86 106 5.9E-6 T 13-10-2018 IPR005560 Protein of unknown function DUF326 CS348_14060 0fcaa17cd5dcf806a8ca3308d3fa83da 108 Pfam PF03860 Domain of Unknown Function (DUF326) 64 84 3.9E-5 T 13-10-2018 IPR005560 Protein of unknown function DUF326 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 13-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 2.2E-94 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 Gene3D G3DSA:1.20.210.10 30 565 1.2E-188 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 SUPERFAMILY SSF81442 43 560 3.4E-179 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_18165 f66e6ca7a1547e2d15c63fd3e72b7d4e 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 6.4E-135 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 440 274.142 T 13-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 SUPERFAMILY SSF53686 93 435 1.03E-52 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 106 120 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 88 402 8.2E-66 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 Gene3D G3DSA:3.40.50.1100 114 236 3.7E-198 T 13-10-2018 CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 Gene3D G3DSA:3.40.50.1100 21 436 3.7E-198 T 13-10-2018 CS348_00170 8b0cea06d8dd7304285853a7ca807866 440 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 8 436 3.0E-233 T 13-10-2018 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 CS348_24955 818890ea073f0fc219d14f4a6881f27c 198 SUPERFAMILY SSF53474 8 195 1.38E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_24955 818890ea073f0fc219d14f4a6881f27c 198 Pfam PF01738 Dienelactone hydrolase family 9 195 1.4E-23 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 CS348_24955 818890ea073f0fc219d14f4a6881f27c 198 Gene3D G3DSA:3.40.50.1820 4 196 1.8E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 Pfam PF13145 PPIC-type PPIASE domain 386 484 4.6E-6 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 Pfam PF13145 PPIC-type PPIASE domain 247 369 2.3E-23 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 295 316 - T 13-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 SUPERFAMILY SSF109998 39 240 9.81E-38 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 SUPERFAMILY SSF54534 224 354 9.81E-23 T 13-10-2018 CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 Gene3D G3DSA:3.10.50.40 264 363 8.0E-32 T 13-10-2018 CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 Pfam PF13624 SurA N-terminal domain 1 165 1.1E-53 T 13-10-2018 CS348_18105 82aacc908bffdec9c3f17966d9be84ea 623 Gene3D G3DSA:1.10.4030.30 39 175 1.9E-14 T 13-10-2018 CS348_12655 fa0a2065a6f1f316be4cf7c7912234d9 462 Gene3D G3DSA:3.40.50.1220 286 462 5.5E-89 T 13-10-2018 CS348_12655 fa0a2065a6f1f316be4cf7c7912234d9 462 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 1.2E-203 T 13-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CS348_12655 fa0a2065a6f1f316be4cf7c7912234d9 462 PIRSF PIRSF000204 1 462 8.2E-239 T 13-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 CS348_12655 fa0a2065a6f1f316be4cf7c7912234d9 462 SUPERFAMILY SSF52467 289 462 1.4E-78 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_23090 72cdc130e84587c24612ba0fa56fb8cf 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 2.8E-59 T 13-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 CS348_23090 72cdc130e84587c24612ba0fa56fb8cf 105 Gene3D G3DSA:1.10.140.10 2 105 3.0E-63 T 13-10-2018 IPR023453 Methionine repressor MetJ domain superfamily CS348_23090 72cdc130e84587c24612ba0fa56fb8cf 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 5.0E-49 T 13-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 CS348_23090 72cdc130e84587c24612ba0fa56fb8cf 105 SUPERFAMILY SSF47598 2 105 2.45E-58 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_23090 72cdc130e84587c24612ba0fa56fb8cf 105 Hamap MF_00744 Met repressor [metJ]. 1 105 42.54 T 13-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 CS348_03090 26b10a31f56d3240d75460db9155660d 220 Pfam PF09335 SNARE associated Golgi protein 48 174 6.2E-22 T 13-10-2018 IPR032816 SNARE associated Golgi protein CS348_06235 eee3b45bf0e166493e9c8e2e29fbda43 179 ProDom PD016683 REPRESSOR TRANSCRIPTION FLIC PLASMID PHASE FLAGELLIN TRANSCRIPTIONAL DNA-BINDING GENE FLAGELLUM 6 179 1.0E-98 T 13-10-2018 IPR003223 Flagellin phase1 repressor GO:0003700|GO:0006355 CS348_06235 eee3b45bf0e166493e9c8e2e29fbda43 179 Pfam PF03614 Repressor of phase-1 flagellin 8 172 1.7E-88 T 13-10-2018 IPR003223 Flagellin phase1 repressor GO:0003700|GO:0006355 CS348_01210 cc35976d2a8e361bdcce21866f889336 118 Gene3D G3DSA:3.30.910.40 3 107 1.2E-39 T 13-10-2018 CS348_01210 cc35976d2a8e361bdcce21866f889336 118 SUPERFAMILY SSF53955 5 115 4.25E-25 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_21740 04ab28faaa32d5b453d902ac311d51f8 387 SUPERFAMILY SSF56059 1 384 2.65E-83 T 13-10-2018 CS348_21740 04ab28faaa32d5b453d902ac311d51f8 387 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 16 385 3.6E-151 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain CS348_21740 04ab28faaa32d5b453d902ac311d51f8 387 SUPERFAMILY SSF52440 171 277 4.03E-38 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CS348_21740 04ab28faaa32d5b453d902ac311d51f8 387 Gene3D G3DSA:3.30.1490.330 261 344 1.1E-27 T 13-10-2018 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 Gene3D G3DSA:3.40.1010.10 7 117 2.2E-30 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 13 27 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 10 255 6.7E-99 T 13-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 10 215 4.3E-47 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 83 116 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 SUPERFAMILY SSF53790 7 255 2.62E-69 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CS348_09520 3f97f395ed08561a0ae5a66cd7907a39 257 Gene3D G3DSA:3.30.950.10 118 237 1.4E-49 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CS348_13340 a4d01602daec30c043bda06919d217d1 277 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 6 276 72.145 T 13-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein CS348_13340 a4d01602daec30c043bda06919d217d1 277 Pfam PF03618 Kinase/pyrophosphorylase 9 267 1.1E-72 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 CS348_01835 c6f190d48deb520485d709a27a588294 187 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 187 4.8E-94 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.5E-13 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.5E-13 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 1.5E-13 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00097 Anthranilate synthase component II signature 47 56 2.0E-37 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00097 Anthranilate synthase component II signature 119 131 2.0E-37 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00097 Anthranilate synthase component II signature 164 177 2.0E-37 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00097 Anthranilate synthase component II signature 2 16 2.0E-37 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00097 Anthranilate synthase component II signature 99 107 2.0E-37 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00097 Anthranilate synthase component II signature 74 85 2.0E-37 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.4E-5 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.4E-5 T 13-10-2018 CS348_01835 c6f190d48deb520485d709a27a588294 187 Pfam PF00117 Glutamine amidotransferase class-I 3 185 9.5E-59 T 13-10-2018 IPR017926 Glutamine amidotransferase CS348_01835 c6f190d48deb520485d709a27a588294 187 SUPERFAMILY SSF52317 1 186 2.04E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_01835 c6f190d48deb520485d709a27a588294 187 Gene3D G3DSA:3.40.50.880 1 187 2.7E-64 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_06670 7e10d96ec00eb0dd3ba0d572f2265a68 86 SUPERFAMILY SSF54862 5 68 1.19E-17 T 13-10-2018 CS348_06670 7e10d96ec00eb0dd3ba0d572f2265a68 86 Gene3D G3DSA:3.30.70.20 2 86 4.1E-37 T 13-10-2018 CS348_06670 7e10d96ec00eb0dd3ba0d572f2265a68 86 Pfam PF00037 4Fe-4S binding domain 6 25 4.1E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_06670 7e10d96ec00eb0dd3ba0d572f2265a68 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_04720 c373abac2700920cafa6a7e48d3d886d 103 Gene3D G3DSA:2.30.130.30 1 103 1.7E-49 T 13-10-2018 CS348_04720 c373abac2700920cafa6a7e48d3d886d 103 PIRSF PIRSF029143 1 103 6.6E-53 T 13-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 CS348_04720 c373abac2700920cafa6a7e48d3d886d 103 Pfam PF04266 ASCH domain 6 94 1.6E-15 T 13-10-2018 IPR007374 ASCH domain CS348_04720 c373abac2700920cafa6a7e48d3d886d 103 SMART SM01022 6 102 8.4E-26 T 13-10-2018 IPR007374 ASCH domain CS348_04720 c373abac2700920cafa6a7e48d3d886d 103 SUPERFAMILY SSF88697 1 102 1.24E-33 T 13-10-2018 IPR015947 PUA-like superfamily CS348_04720 c373abac2700920cafa6a7e48d3d886d 103 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 2 103 31.626 T 13-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 CS348_13805 49f6f78d4249062a914e48bb91268384 344 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 337 6.9E-152 T 13-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CS348_13805 49f6f78d4249062a914e48bb91268384 344 Gene3D G3DSA:3.40.630.30 2 272 2.7E-122 T 13-10-2018 CS348_13805 49f6f78d4249062a914e48bb91268384 344 SUPERFAMILY SSF55729 1 337 8.34E-134 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_13805 49f6f78d4249062a914e48bb91268384 344 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 337 3.5E-163 T 13-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CS348_13805 49f6f78d4249062a914e48bb91268384 344 Gene3D G3DSA:2.40.40.20 273 339 1.3E-6 T 13-10-2018 CS348_13805 49f6f78d4249062a914e48bb91268384 344 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 343 71.804 T 13-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CS348_13805 49f6f78d4249062a914e48bb91268384 344 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 335 4.7E-145 T 13-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CS348_07850 7227651589cbe02ba4d4ce0959db8b51 468 Gene3D G3DSA:1.20.1740.10 16 466 2.1E-59 T 13-10-2018 CS348_07850 7227651589cbe02ba4d4ce0959db8b51 468 PIRSF PIRSF006060 5 466 1.6E-67 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_07850 7227651589cbe02ba4d4ce0959db8b51 468 Pfam PF00324 Amino acid permease 24 431 7.7E-89 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_25430 e6b6bf513aa16d6d287d9eae8ffeb420 52 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 6 51 1.0E-5 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_25430 e6b6bf513aa16d6d287d9eae8ffeb420 52 Pfam PF01848 Hok/gef family 7 48 3.4E-15 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_25430 e6b6bf513aa16d6d287d9eae8ffeb420 52 PRINTS PR00281 Hok/Gef cell toxic protein family signature 27 49 1.6E-9 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_25430 e6b6bf513aa16d6d287d9eae8ffeb420 52 PRINTS PR00281 Hok/Gef cell toxic protein family signature 7 25 1.6E-9 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_04030 fb10288cd527b3f5b52277cd32f2f0f1 932 Gene3D G3DSA:3.40.50.300 493 858 2.3E-22 T 13-10-2018 CS348_04030 fb10288cd527b3f5b52277cd32f2f0f1 932 Gene3D G3DSA:1.10.8.730 566 726 2.3E-22 T 13-10-2018 CS348_04030 fb10288cd527b3f5b52277cd32f2f0f1 932 SUPERFAMILY SSF52540 460 858 2.26E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_04030 fb10288cd527b3f5b52277cd32f2f0f1 932 TIGRFAM TIGR03744 traC_PFL_4706: conjugative transfer ATPase, PFL_4706 family 36 929 0.0 T 13-10-2018 IPR022303 Conjugative transfer ATPase CS348_04030 fb10288cd527b3f5b52277cd32f2f0f1 932 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 46 310 6.4E-67 T 13-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase CS348_09850 dac654a516c3e93b0c59b55c75693103 125 Pfam PF04347 Flagellar biosynthesis protein, FliO 38 120 4.9E-21 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 CS348_09850 dac654a516c3e93b0c59b55c75693103 125 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 26 94 5.8E-24 T 13-10-2018 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 CS348_20505 357ac801b4a4b34eb8e679e208c51c0b 229 Pfam PF06551 Protein of unknown function (DUF1120) 27 135 1.2E-42 T 13-10-2018 IPR010546 Protein of unknown function DUF1120 CS348_13555 2576059e58228c15808764d5f2893c2b 298 PIRSF PIRSF020481 1 298 1.4E-106 T 13-10-2018 IPR014507 Baseplate assembly protein J, predicted CS348_13555 2576059e58228c15808764d5f2893c2b 298 Pfam PF04865 Baseplate J-like protein 113 258 5.8E-26 T 13-10-2018 IPR006949 Baseplate protein J-like CS348_02505 2448c937a210fce492d9d4f5e1079a98 130 Gene3D G3DSA:3.30.230.10 1 130 3.2E-54 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CS348_02505 2448c937a210fce492d9d4f5e1079a98 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 CS348_02505 2448c937a210fce492d9d4f5e1079a98 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 34.021 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid CS348_02505 2448c937a210fce492d9d4f5e1079a98 130 SUPERFAMILY SSF54211 5 130 2.96E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_02505 2448c937a210fce492d9d4f5e1079a98 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 2.9E-46 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 CS348_21005 cec549f7deb089ae8129bac204c56bdd 54 Pfam PF06568 Domain of unknown function (DUF1127) 18 54 4.7E-13 T 13-10-2018 IPR009506 Protein of unknown function DUF1127 CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 112 129 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 156 9.1E-71 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 Gene3D G3DSA:2.40.50.100 77 156 3.2E-31 T 13-10-2018 CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 Pfam PF00364 Biotin-requiring enzyme 83 155 9.2E-25 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 SUPERFAMILY SSF51230 81 156 6.81E-26 T 13-10-2018 IPR011053 Single hybrid motif CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 117 130 2.0E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 98 2.0E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CS348_02320 1a17af16f91b6b12647bc23c3f6b9b03 156 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 102 116 2.0E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CS348_06360 be2950e132d7de48417d60002e4ab940 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 1.0E-69 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CS348_06360 be2950e132d7de48417d60002e4ab940 160 Gene3D G3DSA:2.40.280.10 7 135 1.2E-45 T 13-10-2018 IPR023620 Small protein B CS348_06360 be2950e132d7de48417d60002e4ab940 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 72.346 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CS348_06360 be2950e132d7de48417d60002e4ab940 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 7.1E-54 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CS348_06360 be2950e132d7de48417d60002e4ab940 160 Pfam PF01668 SmpB protein 14 157 1.0E-56 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CS348_06360 be2950e132d7de48417d60002e4ab940 160 SUPERFAMILY SSF74982 8 138 1.83E-50 T 13-10-2018 IPR023620 Small protein B CS348_06360 be2950e132d7de48417d60002e4ab940 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site CS348_15845 826d5f33991377a13ce39f1d6cfca399 80 Pfam PF06806 Putative excisionase (DUF1233) 5 74 8.4E-32 T 13-10-2018 IPR009634 Putative excisionase CS348_15845 826d5f33991377a13ce39f1d6cfca399 80 Gene3D G3DSA:1.10.1660.60 2 79 1.9E-22 T 13-10-2018 IPR038146 Bacteriophage 933W-like, putative excisionase superfamily CS348_02555 91b7c1815ed366d628f0b6364fb16c57 426 Gene3D G3DSA:2.30.40.10 11 409 4.9E-187 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_02555 91b7c1815ed366d628f0b6364fb16c57 426 Gene3D G3DSA:3.20.20.140 57 364 4.9E-187 T 13-10-2018 CS348_02555 91b7c1815ed366d628f0b6364fb16c57 426 Pfam PF07969 Amidohydrolase family 44 404 8.8E-60 T 13-10-2018 IPR013108 Amidohydrolase 3 CS348_02555 91b7c1815ed366d628f0b6364fb16c57 426 SUPERFAMILY SSF51338 7 64 2.16E-10 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_02555 91b7c1815ed366d628f0b6364fb16c57 426 SUPERFAMILY SSF51556 56 375 3.3E-108 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 4.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 4.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 PIRSF PIRSF000094 1 260 2.0E-124 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 Gene3D G3DSA:3.40.50.720 1 262 2.5E-63 T 13-10-2018 CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 8.7E-85 T 13-10-2018 CS348_11395 9a6173f729468d9d5cd56de1f29fbfc4 262 SUPERFAMILY SSF51735 6 253 1.85E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_18175 ef1de4047217eebb4967a2b472caef62 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 92 4.0E-19 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 CS348_18175 ef1de4047217eebb4967a2b472caef62 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 12 107 1.5E-38 T 13-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 SUPERFAMILY SSF52540 4 226 2.8E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 Pfam PF00005 ABC transporter 23 163 4.1E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 Gene3D G3DSA:3.40.50.300 2 244 8.0E-36 T 13-10-2018 CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 Pfam PF00005 ABC transporter 276 429 7.3E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 SMART SM00382 28 244 5.4E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 SMART SM00382 285 479 7.7E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 Gene3D G3DSA:3.40.50.300 247 481 6.4E-50 T 13-10-2018 CS348_16450 2b3211fc88c93f3b673f9beaeb24e46d 491 SUPERFAMILY SSF52540 252 474 5.8E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17220 030ea8a7ac7618bcc6e472d4192ea2dd 411 Pfam PF11922 Domain of unknown function (DUF3440) 353 384 1.4E-7 T 13-10-2018 IPR021845 Protein of unknown function DUF3440 CS348_17220 030ea8a7ac7618bcc6e472d4192ea2dd 411 Pfam PF11922 Domain of unknown function (DUF3440) 237 340 8.2E-25 T 13-10-2018 IPR021845 Protein of unknown function DUF3440 CS348_17220 030ea8a7ac7618bcc6e472d4192ea2dd 411 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 30 234 1.7E-15 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CS348_17220 030ea8a7ac7618bcc6e472d4192ea2dd 411 SUPERFAMILY SSF52402 10 232 5.29E-42 T 13-10-2018 CS348_02855 2ab862effb551f51edc791b985e293c6 298 Pfam PF01136 Peptidase family U32 99 204 9.2E-10 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 Gene3D G3DSA:3.40.50.7700 1 169 2.8E-77 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 10 163 32.211 T 13-10-2018 IPR033747 Class I PurE CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 SUPERFAMILY SSF52255 7 165 2.09E-66 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 SMART SM01001 8 159 1.4E-101 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 PIRSF PIRSF001338 5 166 3.2E-66 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 10 163 1.4E-65 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CS348_17780 fbf7aa20c8a82ee84ba0e544e0484f16 169 Pfam PF00731 AIR carboxylase 9 157 7.0E-63 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CS348_13330 d5794b50918ecfcef53bb21dbff992de 546 ProSitePatterns PS00455 Putative AMP-binding domain signature. 193 204 - T 13-10-2018 IPR020845 AMP-binding, conserved site CS348_13330 d5794b50918ecfcef53bb21dbff992de 546 Pfam PF00501 AMP-binding enzyme 31 439 5.0E-102 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CS348_13330 d5794b50918ecfcef53bb21dbff992de 546 Gene3D G3DSA:3.30.300.310 435 539 1.6E-34 T 13-10-2018 CS348_13330 d5794b50918ecfcef53bb21dbff992de 546 Gene3D G3DSA:3.40.50.12780 2 434 4.2E-111 T 13-10-2018 CS348_13330 d5794b50918ecfcef53bb21dbff992de 546 SUPERFAMILY SSF56801 24 536 1.2E-145 T 13-10-2018 CS348_13330 d5794b50918ecfcef53bb21dbff992de 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 448 525 2.4E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 SUPERFAMILY SSF51905 7 360 1.3E-61 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 Gene3D G3DSA:3.30.9.30 39 358 1.8E-112 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 SUPERFAMILY SSF54373 179 277 9.42E-15 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 Gene3D G3DSA:3.50.50.60 8 350 1.8E-112 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 5.1E-18 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 5.1E-18 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 5.1E-18 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 5.1E-18 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 334 350 5.1E-18 T 13-10-2018 CS348_08765 cba632a46173a18e9dac7a0eecd9cc6d 397 Pfam PF01494 FAD binding domain 5 346 2.9E-26 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 SMART SM00382 49 242 1.7E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 Pfam PF00005 ABC transporter 41 192 4.9E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 311 5.9E-19 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 Gene3D G3DSA:3.40.50.300 9 333 4.5E-96 T 13-10-2018 CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 242 329 5.3E-27 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CS348_11135 1c567d22308c23b0bf0c4d9958c02152 334 SUPERFAMILY SSF52540 26 264 1.21E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00110 4e67de5c07088593ee70f1cfbb709ad7 159 SUPERFAMILY SSF82093 30 143 6.02E-40 T 13-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 CS348_00110 4e67de5c07088593ee70f1cfbb709ad7 159 Gene3D G3DSA:2.40.50.140 30 143 5.1E-44 T 13-10-2018 CS348_00110 4e67de5c07088593ee70f1cfbb709ad7 159 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.174 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 CS348_00110 4e67de5c07088593ee70f1cfbb709ad7 159 Pfam PF03100 CcmE 4 137 8.1E-44 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 CS348_08415 4e67de5c07088593ee70f1cfbb709ad7 159 SUPERFAMILY SSF82093 30 143 6.02E-40 T 13-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 CS348_08415 4e67de5c07088593ee70f1cfbb709ad7 159 Gene3D G3DSA:2.40.50.140 30 143 5.1E-44 T 13-10-2018 CS348_08415 4e67de5c07088593ee70f1cfbb709ad7 159 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.174 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 CS348_08415 4e67de5c07088593ee70f1cfbb709ad7 159 Pfam PF03100 CcmE 4 137 8.1E-44 T 13-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 CS348_15240 6ff2a319f6ee5fadc58b737a0d553ae6 182 SUPERFAMILY SSF55166 68 182 6.02E-33 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CS348_15240 6ff2a319f6ee5fadc58b737a0d553ae6 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 1.3E-62 T 13-10-2018 IPR010275 Protein of unknown function DUF882 CS348_15240 6ff2a319f6ee5fadc58b737a0d553ae6 182 Gene3D G3DSA:3.30.1380.10 64 182 2.7E-11 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CS348_15485 6ba454e6e715817953b0517e283a0f76 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 15 101 28.319 T 13-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS CS348_15485 6ba454e6e715817953b0517e283a0f76 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 5.8E-34 T 13-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 CS348_15485 6ba454e6e715817953b0517e283a0f76 106 Gene3D G3DSA:3.30.1390.10 1 106 3.7E-48 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CS348_15485 6ba454e6e715817953b0517e283a0f76 106 SUPERFAMILY SSF54736 22 105 1.99E-33 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CS348_02090 dbe782da2b9c8072406e13de5b866cf0 117 Gene3D G3DSA:3.30.420.100 1 117 7.0E-47 T 13-10-2018 CS348_02090 dbe782da2b9c8072406e13de5b866cf0 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 4.0E-47 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02090 dbe782da2b9c8072406e13de5b866cf0 117 SUPERFAMILY SSF53137 3 115 7.85E-54 T 13-10-2018 CS348_02090 dbe782da2b9c8072406e13de5b866cf0 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.257 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02090 dbe782da2b9c8072406e13de5b866cf0 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 7.1E-44 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_01310 4611a854e62cdfd1ca1f004fb42c985e 374 Pfam PF12698 ABC-2 family transporter protein 30 363 1.3E-32 T 13-10-2018 CS348_07710 14cd229ec544539336d733a07befbdfe 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 304 2.1E-108 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CS348_07710 14cd229ec544539336d733a07befbdfe 310 Gene3D G3DSA:3.40.50.150 106 280 1.8E-46 T 13-10-2018 CS348_07710 14cd229ec544539336d733a07befbdfe 310 PIRSF PIRSF037167 1 307 2.0E-151 T 13-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 CS348_07710 14cd229ec544539336d733a07befbdfe 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 4.3E-140 T 13-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 CS348_07710 14cd229ec544539336d733a07befbdfe 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 54.626 T 13-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 CS348_07710 14cd229ec544539336d733a07befbdfe 310 Pfam PF05175 Methyltransferase small domain 132 215 5.3E-16 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_07710 14cd229ec544539336d733a07befbdfe 310 SUPERFAMILY SSF53335 15 294 4.0E-54 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_07710 14cd229ec544539336d733a07befbdfe 310 Gene3D G3DSA:1.10.8.10 14 105 1.0E-6 T 13-10-2018 CS348_07710 14cd229ec544539336d733a07befbdfe 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_04245 33174211633c801ce319f9335331f9a9 306 Pfam PF12835 Integrase 114 261 1.5E-55 T 13-10-2018 IPR024456 Integrase catalytic domain, putative CS348_04245 33174211633c801ce319f9335331f9a9 306 Gene3D G3DSA:1.10.443.10 123 303 3.0E-6 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_04245 33174211633c801ce319f9335331f9a9 306 Pfam PF12834 Phage integrase, N-terminal 15 100 2.2E-17 T 13-10-2018 IPR024457 Putative integrase, N-terminal CS348_04245 33174211633c801ce319f9335331f9a9 306 SUPERFAMILY SSF56349 17 288 1.09E-14 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_04245 33174211633c801ce319f9335331f9a9 306 Gene3D G3DSA:1.10.150.130 6 111 2.7E-6 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PRINTS PR01398 Isochorismatase signature 80 99 6.7E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PRINTS PR01398 Isochorismatase signature 112 134 6.7E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PRINTS PR01398 Isochorismatase signature 2 14 6.7E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PRINTS PR01398 Isochorismatase signature 63 80 6.7E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PRINTS PR01398 Isochorismatase signature 186 203 6.7E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PRINTS PR01398 Isochorismatase signature 168 186 6.7E-51 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 SUPERFAMILY SSF47336 213 280 6.81E-7 T 13-10-2018 IPR036736 ACP-like superfamily CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 Pfam PF00857 Isochorismatase family 32 204 1.9E-36 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 Gene3D G3DSA:1.10.1200.10 210 284 1.5E-29 T 13-10-2018 IPR036736 ACP-like superfamily CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 SUPERFAMILY SSF52499 1 208 3.92E-64 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 PIRSF PIRSF001111 1 285 7.9E-131 T 13-10-2018 IPR016291 Isochorismatase GO:0008908 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 Gene3D G3DSA:3.40.50.850 1 207 2.4E-81 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_17260 337fadb6dae0666cb2e719a66e85cd3d 285 Pfam PF00550 Phosphopantetheine attachment site 217 276 3.8E-7 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CS348_11535 44799ebbe66db7432733210be229b13b 321 Pfam PF13378 Enolase C-terminal domain-like 133 317 6.3E-27 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_11535 44799ebbe66db7432733210be229b13b 321 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CS348_11535 44799ebbe66db7432733210be229b13b 321 Gene3D G3DSA:3.20.20.120 117 321 2.8E-60 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_11535 44799ebbe66db7432733210be229b13b 321 SUPERFAMILY SSF54826 2 112 3.18E-32 T 13-10-2018 CS348_11535 44799ebbe66db7432733210be229b13b 321 SMART SM00922 130 223 1.6E-19 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_11535 44799ebbe66db7432733210be229b13b 321 SUPERFAMILY SSF51604 120 313 1.44E-52 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_11535 44799ebbe66db7432733210be229b13b 321 Gene3D G3DSA:3.30.390.10 1 103 1.1E-33 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_11535 44799ebbe66db7432733210be229b13b 321 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 87 112 - T 13-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 CS348_11535 44799ebbe66db7432733210be229b13b 321 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 2 112 1.2E-29 T 13-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CS348_20120 9b42635afadcd7b581b7accf69386555 149 SUPERFAMILY SSF54534 5 143 1.91E-35 T 13-10-2018 CS348_20120 9b42635afadcd7b581b7accf69386555 149 Gene3D G3DSA:2.40.10.330 73 129 4.4E-44 T 13-10-2018 CS348_20120 9b42635afadcd7b581b7accf69386555 149 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 141 1.9E-14 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CS348_20120 9b42635afadcd7b581b7accf69386555 149 Gene3D G3DSA:3.10.50.40 14 142 4.4E-44 T 13-10-2018 CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 40.351 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 Gene3D G3DSA:2.40.50.620 32 94 1.7E-14 T 13-10-2018 CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 SUPERFAMILY SSF50447 1 208 2.65E-80 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 13-10-2018 IPR019926 Ribosomal protein L3, conserved site CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 Gene3D G3DSA:2.40.30.10 128 209 1.1E-18 T 13-10-2018 CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 Pfam PF00297 Ribosomal protein L3 34 182 2.4E-14 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02010 afab8419b2c85615f5b8de38297a3eb3 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 1.1E-91 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_14680 f8fdf6b98e6fa81707e92fc6774696c0 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 5 306 1.0E-144 T 13-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 CS348_14680 f8fdf6b98e6fa81707e92fc6774696c0 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 1.3E-114 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_14680 f8fdf6b98e6fa81707e92fc6774696c0 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 50.918 T 13-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 CS348_14680 f8fdf6b98e6fa81707e92fc6774696c0 306 PIRSF PIRSF026649 2 306 1.2E-103 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CS348_01760 ea63c69543c0461de3e55b95f6b44eaf 425 Gene3D G3DSA:3.30.70.1070 328 425 2.6E-31 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_01760 ea63c69543c0461de3e55b95f6b44eaf 425 Pfam PF05036 Sporulation related domain 342 414 2.5E-12 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CS348_01760 ea63c69543c0461de3e55b95f6b44eaf 425 SUPERFAMILY SSF110997 341 405 6.67E-7 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_01760 ea63c69543c0461de3e55b95f6b44eaf 425 Hamap MF_02021 Cell division protein DamX [damX]. 1 425 24.975 T 13-10-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 CS348_25360 6649437abbcfd55dbd5080125c1f7e7d 867 TIGRFAM TIGR02746 TraC-F-type: type-IV secretion system protein TraC 41 851 6.2E-228 T 13-10-2018 IPR014117 Type-IV secretion system protein TraC CS348_25360 6649437abbcfd55dbd5080125c1f7e7d 867 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 35 277 3.7E-40 T 13-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase CS348_25360 6649437abbcfd55dbd5080125c1f7e7d 867 Gene3D G3DSA:3.40.50.300 466 785 1.4E-42 T 13-10-2018 CS348_25360 6649437abbcfd55dbd5080125c1f7e7d 867 SUPERFAMILY SSF52540 445 773 4.18E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_25360 6649437abbcfd55dbd5080125c1f7e7d 867 Gene3D G3DSA:1.10.8.730 544 656 1.4E-42 T 13-10-2018 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 148 2.6E-46 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 SUPERFAMILY SSF53163 1 158 1.57E-46 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 Pfam PF01750 Hydrogenase maturation protease 20 147 5.1E-37 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 PRINTS PR00446 Hydrogen uptake protein signature 56 66 1.2E-23 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 PRINTS PR00446 Hydrogen uptake protein signature 3 15 1.2E-23 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 PRINTS PR00446 Hydrogen uptake protein signature 35 52 1.2E-23 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 PRINTS PR00446 Hydrogen uptake protein signature 68 84 1.2E-23 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 PRINTS PR00446 Hydrogen uptake protein signature 15 26 1.2E-23 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 Gene3D G3DSA:3.40.50.1450 1 162 1.8E-49 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily CS348_03560 a9817e125b11d520da11c8a23ae8be96 164 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 3 153 1.0E-54 T 13-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 Pfam PF01614 Bacterial transcriptional regulator 133 258 1.0E-42 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 SUPERFAMILY SSF55781 80 262 3.73E-46 T 13-10-2018 CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 Gene3D G3DSA:3.30.450.40 85 266 1.2E-69 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 Gene3D G3DSA:1.10.10.10 12 84 1.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 Pfam PF09339 IclR helix-turn-helix domain 15 63 6.6E-14 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 SMART SM00346 13 103 2.7E-41 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CS348_00875 98ab83ee580812295cddd1c0a8d454c2 266 SUPERFAMILY SSF46785 14 87 2.02E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_15750 eda420ab0cf8578715646483513cd29d 543 Gene3D G3DSA:3.40.50.300 1 166 1.8E-19 T 13-10-2018 CS348_15750 eda420ab0cf8578715646483513cd29d 543 Gene3D G3DSA:3.40.50.300 202 387 7.5E-28 T 13-10-2018 CS348_15750 eda420ab0cf8578715646483513cd29d 543 Pfam PF04851 Type III restriction enzyme, res subunit 9 153 2.6E-11 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CS348_15750 eda420ab0cf8578715646483513cd29d 543 Pfam PF00271 Helicase conserved C-terminal domain 236 327 4.1E-8 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_15750 eda420ab0cf8578715646483513cd29d 543 SMART SM00490 249 329 1.9E-7 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_15750 eda420ab0cf8578715646483513cd29d 543 SUPERFAMILY SSF52540 23 332 3.2E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15750 eda420ab0cf8578715646483513cd29d 543 SMART SM00487 3 185 5.7E-16 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 Gene3D G3DSA:1.10.10.10 1 86 1.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 Gene3D G3DSA:3.40.190.10 167 267 4.0E-102 T 13-10-2018 CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 Gene3D G3DSA:3.40.190.10 92 303 4.0E-102 T 13-10-2018 CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 SUPERFAMILY SSF46785 1 85 2.89E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 Pfam PF03466 LysR substrate binding domain 92 292 1.3E-41 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 SUPERFAMILY SSF53850 91 322 3.39E-45 T 13-10-2018 CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_11300 16af7c8f656d868cb0d188959b10afe6 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 6.0E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 SMART SM00304 212 264 6.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 480 6.7E-52 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 SMART SM00283 265 512 9.7E-92 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 1.5E-56 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 1.5E-56 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 1.5E-56 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 4 29 1.5E-56 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 1.5E-56 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 290 312 - T 13-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 Gene3D G3DSA:1.10.287.950 212 514 4.0E-89 T 13-10-2018 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 Pfam PF00672 HAMP domain 214 261 1.9E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CS348_03525 28862fdd8b997dd0c62b2351595f5127 547 SUPERFAMILY SSF58104 232 521 4.97E-72 T 13-10-2018 CS348_10090 f18088601eae45b96779109055953a06 267 Gene3D G3DSA:3.40.50.1000 18 230 1.8E-49 T 13-10-2018 IPR023214 HAD superfamily CS348_10090 f18088601eae45b96779109055953a06 267 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 18 214 2.0E-23 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_10090 f18088601eae45b96779109055953a06 267 Gene3D G3DSA:3.30.70.1020 99 171 1.8E-49 T 13-10-2018 CS348_10090 f18088601eae45b96779109055953a06 267 SUPERFAMILY SSF56784 18 243 3.72E-40 T 13-10-2018 IPR036412 HAD-like superfamily CS348_10090 f18088601eae45b96779109055953a06 267 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 14 243 1.1E-72 T 13-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 CS348_10090 f18088601eae45b96779109055953a06 267 Pfam PF02358 Trehalose-phosphatase 18 222 3.9E-54 T 13-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 123 141 - T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 24 166 2.6E-50 T 13-10-2018 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 Gene3D G3DSA:3.40.30.10 83 165 1.0E-23 T 13-10-2018 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 PIRSF PIRSF000216 1 166 2.4E-54 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 Gene3D G3DSA:1.10.10.1590 13 82 6.3E-17 T 13-10-2018 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 22 166 1.4E-52 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08025 5fd6b8a89ba46794bf1bef9269adae02 166 SUPERFAMILY SSF52833 16 165 3.35E-50 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_14095 830dd1c42f294630117c81b2a2457b7c 104 ProDom PD170898 LIPOPROTEIN TRL MEMBRANE OUTER TRNA-ASSOCIATED OUTERMEMBRANE LOCUS 17 103 6.0E-43 T 13-10-2018 CS348_14095 830dd1c42f294630117c81b2a2457b7c 104 Pfam PF13146 TRL-like protein family 30 104 9.4E-27 T 13-10-2018 IPR025113 TRL-like protein family CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 Pfam PF13505 Outer membrane protein beta-barrel domain 12 178 2.3E-17 T 13-10-2018 IPR027385 Outer membrane protein beta-barrel CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 170 178 - T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 SUPERFAMILY SSF56925 32 178 5.23E-22 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 Gene3D G3DSA:2.40.160.20 25 178 2.3E-36 T 13-10-2018 CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 133 154 1.3E-14 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 47 59 1.3E-14 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_04825 3a0561e5ed60e419d165eefc4c79141d 178 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 89 112 1.3E-14 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_03160 114ad7f89cf6f236ea550eef54fe23d7 255 Pfam PF08021 Siderophore-interacting FAD-binding domain 23 133 3.0E-33 T 13-10-2018 IPR013113 FAD-binding 9, siderophore-interacting CS348_03160 114ad7f89cf6f236ea550eef54fe23d7 255 Gene3D G3DSA:3.40.50.80 138 255 3.2E-15 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_03160 114ad7f89cf6f236ea550eef54fe23d7 255 Gene3D G3DSA:2.40.30.10 3 134 1.0E-36 T 13-10-2018 CS348_03160 114ad7f89cf6f236ea550eef54fe23d7 255 Pfam PF04954 Siderophore-interacting protein 143 254 4.7E-20 T 13-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain CS348_03160 114ad7f89cf6f236ea550eef54fe23d7 255 SUPERFAMILY SSF63380 5 138 1.65E-14 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_15290 fa85aabca8f005af7d7a1f877956bc08 60 Pfam PF03966 Trm112p-like protein 2 41 1.6E-8 T 13-10-2018 IPR005651 Trm112-like CS348_15290 fa85aabca8f005af7d7a1f877956bc08 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 26.246 T 13-10-2018 IPR038053 Uncharacterised protein family UPF0434 CS348_15290 fa85aabca8f005af7d7a1f877956bc08 60 SUPERFAMILY SSF158997 1 55 2.75E-20 T 13-10-2018 CS348_15290 fa85aabca8f005af7d7a1f877956bc08 60 Gene3D G3DSA:2.20.25.10 8 60 1.1E-23 T 13-10-2018 CS348_10395 c6e67846a4e71322a273b627b11466ed 284 Gene3D G3DSA:1.10.150.130 1 101 1.2E-25 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CS348_10395 c6e67846a4e71322a273b627b11466ed 284 Pfam PF00589 Phage integrase family 120 275 8.4E-17 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CS348_10395 c6e67846a4e71322a273b627b11466ed 284 SUPERFAMILY SSF56349 2 278 4.71E-51 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_10395 c6e67846a4e71322a273b627b11466ed 284 Gene3D G3DSA:1.10.443.10 102 283 1.6E-39 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CS348_03990 894b48bf21bc50efdea18adce0816bd1 107 TIGRFAM TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family 18 103 2.7E-31 T 13-10-2018 IPR019110 Uncharacterised protein family, RAQPRD CS348_03990 894b48bf21bc50efdea18adce0816bd1 107 Pfam PF09686 Plasmid protein of unknown function (Plasmid_RAQPRD) 24 101 4.8E-27 T 13-10-2018 IPR019110 Uncharacterised protein family, RAQPRD CS348_25265 66c9584e2778d5be45d61c94f9424ae2 260 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 144 194 4.1E-12 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_25265 66c9584e2778d5be45d61c94f9424ae2 260 Pfam PF05116 Sucrose-6F-phosphate phosphohydrolase 77 226 5.8E-15 T 13-10-2018 IPR006380 Sucrose-phosphatase-like, N-terminal CS348_25265 66c9584e2778d5be45d61c94f9424ae2 260 Gene3D G3DSA:3.40.50.1000 148 226 1.3E-12 T 13-10-2018 IPR023214 HAD superfamily CS348_25265 66c9584e2778d5be45d61c94f9424ae2 260 Gene3D G3DSA:3.30.70.1410 69 147 2.9E-21 T 13-10-2018 CS348_25265 66c9584e2778d5be45d61c94f9424ae2 260 SUPERFAMILY SSF56784 128 220 1.35E-15 T 13-10-2018 IPR036412 HAD-like superfamily CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 Gene3D G3DSA:3.60.15.10 496 730 5.1E-37 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 221 404 9.3E-48 T 13-10-2018 IPR004477 ComEC/Rec2-related protein CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 Pfam PF13567 Domain of unknown function (DUF4131) 26 157 4.3E-7 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 66 718 1.3E-261 T 13-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 Pfam PF00753 Metallo-beta-lactamase superfamily 506 674 3.0E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 Pfam PF03772 Competence protein 201 469 1.2E-55 T 13-10-2018 IPR004477 ComEC/Rec2-related protein CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 SUPERFAMILY SSF56281 497 742 7.42E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_15310 88a2dcaf2d0e3ffbc960a8e8ca5d9364 754 SMART SM00849 508 689 0.0018 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_20405 d94b30154f796493aff02669a8f751ff 185 Gene3D G3DSA:2.60.40.1090 35 184 1.2E-25 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_20405 d94b30154f796493aff02669a8f751ff 185 SUPERFAMILY SSF49401 43 185 1.24E-22 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_20405 d94b30154f796493aff02669a8f751ff 185 Pfam PF00419 Fimbrial protein 40 184 2.1E-10 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_14340 40c3318afcd9117f6340946d776009b8 85 Pfam PF07338 Protein of unknown function (DUF1471) 34 85 1.0E-19 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_14340 40c3318afcd9117f6340946d776009b8 85 Gene3D G3DSA:3.30.1660.10 20 85 5.4E-19 T 13-10-2018 IPR025543 Dodecin-like CS348_14340 40c3318afcd9117f6340946d776009b8 85 SUPERFAMILY SSF159871 3 85 1.01E-24 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_22095 626c26e926dcd49a408e6c069dba56a6 163 Pfam PF13508 Acetyltransferase (GNAT) domain 85 144 7.4E-9 T 13-10-2018 IPR000182 GNAT domain CS348_22095 626c26e926dcd49a408e6c069dba56a6 163 Gene3D G3DSA:3.40.630.30 1 157 5.2E-45 T 13-10-2018 CS348_22095 626c26e926dcd49a408e6c069dba56a6 163 SUPERFAMILY SSF55729 38 151 9.75E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_17690 0a48851a40b53019aad87115d1888677 240 SUPERFAMILY SSF46894 165 233 1.87E-5 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_17690 0a48851a40b53019aad87115d1888677 240 ProDom PD117946 FIMBRIAE Y REGULATORY FIMBRIA 1 240 5.0E-134 T 13-10-2018 CS348_17690 0a48851a40b53019aad87115d1888677 240 Gene3D G3DSA:1.10.10.10 127 237 3.9E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 Pfam PF00005 ABC transporter 341 477 4.8E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 Gene3D G3DSA:1.20.1560.10 1 307 2.8E-20 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 SUPERFAMILY SSF90123 5 299 7.59E-28 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 SUPERFAMILY SSF52540 317 530 1.08E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 Gene3D G3DSA:3.40.50.300 320 546 1.4E-44 T 13-10-2018 CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 2 527 2.7E-112 T 13-10-2018 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015833|GO:0016021|GO:1904680 CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 ProSitePatterns PS00211 ABC transporters family signature. 450 464 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_08345 ecd83ee581c444bbf0d67d4d4dc1af8a 547 SMART SM00382 348 526 1.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01335 a89e0965d42b1dd43be586f2faf30b57 185 Pfam PF08786 DcrB 51 181 1.4E-31 T 13-10-2018 IPR014894 Protein DcrB CS348_01335 a89e0965d42b1dd43be586f2faf30b57 185 Gene3D G3DSA:3.40.1000.10 48 185 1.3E-9 T 13-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich CS348_18565 8f6b92543d78086b2f8192a2d0808e5a 43 Pfam PF10617 Protein of unknown function (DUF2474) 5 43 1.3E-14 T 13-10-2018 IPR018895 Protein of unknown function DUF2474 CS348_05865 4f92a2cefa647c5b51d16b7cf0468307 120 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 113 1.6E-37 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 CS348_05865 4f92a2cefa647c5b51d16b7cf0468307 120 Gene3D G3DSA:2.40.33.40 1 120 2.2E-27 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_05865 4f92a2cefa647c5b51d16b7cf0468307 120 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 6 118 5.0E-61 T 13-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 CS348_05865 4f92a2cefa647c5b51d16b7cf0468307 120 SUPERFAMILY SSF141530 4 118 8.5E-36 T 13-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 CS348_12210 f74219839895e281d4867a366d4fbbe9 261 Pfam PF06884 Protein of unknown function (DUF1264) 52 216 5.6E-71 T 13-10-2018 IPR010686 Oil body-associated protein-like CS348_04345 70513c30f928b1707f466d38920fab72 140 Pfam PF00717 Peptidase S24-like 59 120 1.1E-13 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CS348_04345 70513c30f928b1707f466d38920fab72 140 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 53 63 3.6E-11 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_04345 70513c30f928b1707f466d38920fab72 140 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 92 104 3.6E-11 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_04345 70513c30f928b1707f466d38920fab72 140 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 64 75 3.6E-11 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_04345 70513c30f928b1707f466d38920fab72 140 SUPERFAMILY SSF51306 15 134 7.32E-33 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CS348_04345 70513c30f928b1707f466d38920fab72 140 Gene3D G3DSA:2.10.109.10 26 137 1.0E-40 T 13-10-2018 CS348_03785 f6a3151ce4cf4c7db3900f14d6cf9947 428 Pfam PF13730 Helix-turn-helix domain 60 120 2.1E-9 T 13-10-2018 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 3 486 6.8E-253 T 13-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 SUPERFAMILY SSF53720 3 455 3.93E-120 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 486 58.182 T 13-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 Pfam PF00171 Aldehyde dehydrogenase family 9 457 1.7E-117 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 Gene3D G3DSA:3.40.605.10 7 449 4.3E-139 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 270 281 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 CS348_13800 8596bcb2a54259ca9f95c0bfe9e6a204 492 Gene3D G3DSA:3.40.309.10 247 437 4.3E-139 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_01385 e228dce8640cc7089e7385e40c2744b6 222 SMART SM00382 27 214 2.8E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_01385 e228dce8640cc7089e7385e40c2744b6 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_01385 e228dce8640cc7089e7385e40c2744b6 222 SUPERFAMILY SSF52540 1 216 3.51E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01385 e228dce8640cc7089e7385e40c2744b6 222 Pfam PF00005 ABC transporter 18 165 8.9E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_01385 e228dce8640cc7089e7385e40c2744b6 222 Gene3D G3DSA:3.40.50.300 1 220 7.9E-64 T 13-10-2018 CS348_01385 e228dce8640cc7089e7385e40c2744b6 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 213 3.2E-92 T 13-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 CS348_17000 2bed6af5d021edfdbfac24fdc90793ef 213 SUPERFAMILY SSF52374 3 212 2.13E-58 T 13-10-2018 CS348_17000 2bed6af5d021edfdbfac24fdc90793ef 213 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 7 212 1.1E-61 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CS348_17000 2bed6af5d021edfdbfac24fdc90793ef 213 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 68 3.2E-12 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_17000 2bed6af5d021edfdbfac24fdc90793ef 213 Pfam PF01467 Cytidylyltransferase-like 7 187 6.3E-36 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CS348_17000 2bed6af5d021edfdbfac24fdc90793ef 213 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 3 213 30.541 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CS348_17000 2bed6af5d021edfdbfac24fdc90793ef 213 Gene3D G3DSA:3.40.50.620 2 213 1.6E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_23835 b2a9b2dbaab98b01f4e1ef745b152fb9 194 Pfam PF12804 MobA-like NTP transferase domain 9 159 9.5E-35 T 13-10-2018 IPR025877 MobA-like NTP transferase CS348_23835 b2a9b2dbaab98b01f4e1ef745b152fb9 194 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 190 29.787 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 CS348_23835 b2a9b2dbaab98b01f4e1ef745b152fb9 194 SUPERFAMILY SSF53448 7 187 9.24E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_23835 b2a9b2dbaab98b01f4e1ef745b152fb9 194 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 7 188 6.7E-74 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 CS348_23835 b2a9b2dbaab98b01f4e1ef745b152fb9 194 Gene3D G3DSA:3.90.550.10 3 193 8.5E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_08750 e032b8f227b33832094c191bed8438e8 345 Gene3D G3DSA:2.60.120.10 8 345 1.5E-126 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_08750 e032b8f227b33832094c191bed8438e8 345 Pfam PF07883 Cupin domain 95 162 1.4E-24 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_08750 e032b8f227b33832094c191bed8438e8 345 TIGRFAM TIGR02272 gentisate_1_2: gentisate 1,2-dioxygenase 11 344 4.3E-187 T 13-10-2018 IPR011960 Gentisate 1,2-dioxygenase CS348_08750 e032b8f227b33832094c191bed8438e8 345 SUPERFAMILY SSF51182 10 343 1.55E-114 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_23580 470258de6468af1423a91932fe675268 219 Pfam PF03591 AzlC protein 19 154 5.3E-30 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease CS348_08560 7f54f3931ad96326a19d40280d9df7e6 328 SUPERFAMILY SSF52540 6 188 1.2E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08560 7f54f3931ad96326a19d40280d9df7e6 328 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 177 6.7E-40 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CS348_08560 7f54f3931ad96326a19d40280d9df7e6 328 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 242 321 3.3E-5 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal CS348_08560 7f54f3931ad96326a19d40280d9df7e6 328 Gene3D G3DSA:3.40.50.300 2 194 4.0E-46 T 13-10-2018 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Gene3D G3DSA:3.10.50.40 150 246 1.4E-113 T 13-10-2018 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 159 232 4.4E-14 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Gene3D G3DSA:1.10.3120.10 116 417 1.4E-113 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 SUPERFAMILY SSF109998 248 429 2.75E-47 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 PIRSF PIRSF003095 1 432 7.5E-131 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Gene3D G3DSA:3.30.70.1050 1 115 1.6E-42 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 9.1E-41 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 5.1E-42 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 TIGRFAM TIGR00115 tig: trigger factor 13 412 2.9E-142 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 SUPERFAMILY SSF102735 1 131 1.57E-39 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 Hamap MF_00303 Trigger factor [tig]. 1 418 22.073 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CS348_18130 a60cf7af9dc809e6b27546461bc630a6 432 SUPERFAMILY SSF54534 96 241 5.11E-37 T 13-10-2018 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 Pfam PF05746 DALR anticodon binding domain 582 679 4.0E-8 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 7.1E-37 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 7.1E-37 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 7.1E-37 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 7.1E-37 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 7.1E-37 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 SUPERFAMILY SSF109604 339 511 1.88E-16 T 13-10-2018 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 1.8E-214 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_00945 bacb4d16ccbe15cf09e23269c3ffb9b8 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.95 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 SUPERFAMILY SSF58104 232 505 1.29E-60 T 13-10-2018 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 319 474 1.7E-46 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 SMART SM00283 259 506 1.5E-85 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 114 7.0E-10 T 13-10-2018 IPR000014 PAS domain CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 280 309 1.5E-38 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 1.5E-38 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 1.5E-38 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 1.5E-38 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 Pfam PF08447 PAS fold 31 113 3.7E-14 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 Gene3D G3DSA:3.30.450.20 8 137 2.4E-21 T 13-10-2018 CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 SMART SM00086 80 121 4.7E-4 T 13-10-2018 IPR001610 PAC motif CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 SUPERFAMILY SSF55785 21 114 2.79E-24 T 13-10-2018 IPR035965 PAS domain superfamily CS348_03145 d4437204d20814a32a9696e9c1502e9b 506 Gene3D G3DSA:1.10.287.950 206 506 2.6E-76 T 13-10-2018 CS348_10860 5c4fc66bb6e8c17238aa16aa428ccc16 514 PIRSF PIRSF006446 356 514 4.3E-34 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_10860 5c4fc66bb6e8c17238aa16aa428ccc16 514 PIRSF PIRSF006446 1 331 4.0E-119 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_10860 5c4fc66bb6e8c17238aa16aa428ccc16 514 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 8.8E-176 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_01180 2d6da9c0621332fc39d8ba7cf30e310b 255 SMART SM00052 4 247 7.1E-38 T 13-10-2018 IPR001633 EAL domain CS348_01180 2d6da9c0621332fc39d8ba7cf30e310b 255 Gene3D G3DSA:3.20.20.450 19 253 1.3E-37 T 13-10-2018 IPR035919 EAL domain superfamily CS348_01180 2d6da9c0621332fc39d8ba7cf30e310b 255 SUPERFAMILY SSF141868 25 252 2.48E-31 T 13-10-2018 IPR035919 EAL domain superfamily CS348_01180 2d6da9c0621332fc39d8ba7cf30e310b 255 Pfam PF00563 EAL domain 27 242 1.4E-29 T 13-10-2018 IPR001633 EAL domain CS348_20960 6aedf35e649292b89033466ef18f721d 140 Gene3D G3DSA:3.40.50.510 1 140 1.5E-42 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_20960 6aedf35e649292b89033466ef18f721d 140 SUPERFAMILY SSF53062 1 129 1.07E-29 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_20960 6aedf35e649292b89033466ef18f721d 140 Pfam PF03610 PTS system fructose IIA component 6 109 6.1E-15 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CS348_14415 4268b83ea1ba7221f4f4cef338cb82e8 340 Gene3D G3DSA:3.30.160.60 71 109 8.8E-26 T 13-10-2018 CS348_14415 4268b83ea1ba7221f4f4cef338cb82e8 340 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 7 332 32.644 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CS348_14415 4268b83ea1ba7221f4f4cef338cb82e8 340 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 2 337 1.0E-143 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CS348_14415 4268b83ea1ba7221f4f4cef338cb82e8 340 Pfam PF02618 YceG-like family 43 328 3.3E-80 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CS348_14415 4268b83ea1ba7221f4f4cef338cb82e8 340 Gene3D G3DSA:3.30.160.60 302 340 4.2E-22 T 13-10-2018 CS348_21710 559e7c93e5a8aa7b321cb2b245e9fd51 354 Hamap MF_01266 Probable L-ascorbate-6-phosphate lactonase UlaG [ulaG]. 1 354 97.785 T 13-10-2018 IPR023951 L-ascorbate-6-phosphate lactonase UlaG GO:0019854|GO:0030145|GO:0035460 CS348_21710 559e7c93e5a8aa7b321cb2b245e9fd51 354 Gene3D G3DSA:3.60.15.10 3 354 2.2E-114 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_21710 559e7c93e5a8aa7b321cb2b245e9fd51 354 Pfam PF13483 Beta-lactamase superfamily domain 42 281 8.8E-15 T 13-10-2018 CS348_21710 559e7c93e5a8aa7b321cb2b245e9fd51 354 SUPERFAMILY SSF56281 36 302 2.1E-26 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 4.8E-76 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 PRINTS PR00094 Adenylate kinase signature 81 97 5.7E-36 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 PRINTS PR00094 Adenylate kinase signature 173 187 5.7E-36 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 PRINTS PR00094 Adenylate kinase signature 4 17 5.7E-36 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 PRINTS PR00094 Adenylate kinase signature 32 46 5.7E-36 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 PRINTS PR00094 Adenylate kinase signature 156 171 5.7E-36 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.0E-16 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 Gene3D G3DSA:3.40.50.300 1 214 8.0E-82 T 13-10-2018 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 Pfam PF00406 Adenylate kinase 5 186 1.9E-60 T 13-10-2018 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 SUPERFAMILY SSF52540 1 210 6.16E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17915 6a0ba447b8c3fe90a4ab657a908217c2 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.83 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CS348_08645 f45e2a05b98e5b003bf95f61ad71e9d3 295 Pfam PF12710 haloacid dehalogenase-like hydrolase 89 257 2.2E-16 T 13-10-2018 CS348_08645 f45e2a05b98e5b003bf95f61ad71e9d3 295 SUPERFAMILY SSF56784 74 293 3.1E-41 T 13-10-2018 IPR036412 HAD-like superfamily CS348_08645 f45e2a05b98e5b003bf95f61ad71e9d3 295 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 89 258 4.2E-30 T 13-10-2018 CS348_08645 f45e2a05b98e5b003bf95f61ad71e9d3 295 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 86 288 4.4E-61 T 13-10-2018 CS348_08645 f45e2a05b98e5b003bf95f61ad71e9d3 295 Gene3D G3DSA:3.40.50.1000 1 295 7.7E-92 T 13-10-2018 IPR023214 HAD superfamily CS348_00965 75f4930bebc648d9b71cfa66045e7323 330 Pfam PF13391 HNH endonuclease 226 278 5.2E-8 T 13-10-2018 IPR003615 HNH nuclease CS348_01020 9c50c9aff30661385cb5c2d34effc0da 146 Gene3D G3DSA:3.40.630.30 1 141 2.3E-30 T 13-10-2018 CS348_01020 9c50c9aff30661385cb5c2d34effc0da 146 SUPERFAMILY SSF55729 1 137 6.67E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_01020 9c50c9aff30661385cb5c2d34effc0da 146 Pfam PF13673 Acetyltransferase (GNAT) domain 37 125 4.5E-15 T 13-10-2018 IPR000182 GNAT domain CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 SUPERFAMILY SSF49584 143 219 2.35E-22 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 22 140 8.5E-46 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 Gene3D G3DSA:2.60.40.10 23 138 2.1E-44 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 95 112 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 162 217 3.9E-15 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 Gene3D G3DSA:2.60.40.10 142 223 3.2E-27 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 SUPERFAMILY SSF49354 18 140 1.41E-42 T 13-10-2018 IPR008962 PapD-like superfamily CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 PRINTS PR00969 Pili chaperone signature 122 137 7.5E-37 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 PRINTS PR00969 Pili chaperone signature 68 89 7.5E-37 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 PRINTS PR00969 Pili chaperone signature 157 172 7.5E-37 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 PRINTS PR00969 Pili chaperone signature 23 32 7.5E-37 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_14430 d8d9d76247b397dd21d8e5766aaac810 225 PRINTS PR00969 Pili chaperone signature 96 113 7.5E-37 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_03285 c539165740d25edeabad966c80d5a2c4 58 Pfam PF13260 Protein of unknown function (DUF4051) 1 49 5.1E-29 T 13-10-2018 IPR025125 Protein of unknown function DUF4051 CS348_21490 3d2f797b175bc0e062c24d370326adae 501 Gene3D G3DSA:3.40.605.10 23 462 2.8E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_21490 3d2f797b175bc0e062c24d370326adae 501 Pfam PF00171 Aldehyde dehydrogenase family 16 481 8.5E-140 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_21490 3d2f797b175bc0e062c24d370326adae 501 Gene3D G3DSA:3.40.309.10 249 454 2.8E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_21490 3d2f797b175bc0e062c24d370326adae 501 SUPERFAMILY SSF53720 2 487 1.3E-146 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_21490 3d2f797b175bc0e062c24d370326adae 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 485 3.1E-195 T 13-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 CS348_13355 ab02dcbf8b488a4b6ba3291e2c28dfcc 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 2 452 1.7E-153 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 CS348_13355 ab02dcbf8b488a4b6ba3291e2c28dfcc 480 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 466 45.841 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 CS348_09565 f8229663a79363e201448ffc450e339f 271 SMART SM00382 26 212 1.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_09565 f8229663a79363e201448ffc450e339f 271 TIGRFAM TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein 11 199 1.5E-89 T 13-10-2018 IPR005876 Cobalt transport protein ATP-binding subunit GO:0006824 CS348_09565 f8229663a79363e201448ffc450e339f 271 Pfam PF00005 ABC transporter 17 165 3.1E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_09565 f8229663a79363e201448ffc450e339f 271 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_09565 f8229663a79363e201448ffc450e339f 271 Gene3D G3DSA:3.40.50.300 2 264 3.4E-65 T 13-10-2018 CS348_09565 f8229663a79363e201448ffc450e339f 271 SUPERFAMILY SSF52540 2 226 2.55E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08525 e24b526782b6253f4560638925df62fc 364 Gene3D G3DSA:1.10.3720.10 122 353 3.3E-18 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08525 e24b526782b6253f4560638925df62fc 364 SUPERFAMILY SSF161098 131 346 3.66E-15 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08525 e24b526782b6253f4560638925df62fc 364 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 152 359 6.6E-41 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_03860 93ad5a70cd3fc4acdf9f097d80c0032d 197 SUPERFAMILY SSF54523 42 197 2.04E-44 T 13-10-2018 CS348_03860 93ad5a70cd3fc4acdf9f097d80c0032d 197 Gene3D G3DSA:3.30.1690.10 42 197 8.2E-48 T 13-10-2018 CS348_03860 93ad5a70cd3fc4acdf9f097d80c0032d 197 Pfam PF08805 PilS N terminal 46 196 5.7E-28 T 13-10-2018 IPR014911 Type 4 secretion system, PilS, N-terminal CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 180 1.8E-98 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 155 2.2E-38 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 SUPERFAMILY SSF56784 5 184 3.12E-52 T 13-10-2018 IPR036412 HAD-like superfamily CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 154 1.1E-37 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 Pfam PF13242 HAD-hyrolase-like 109 179 2.0E-12 T 13-10-2018 CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 PIRSF PIRSF004682 1 188 2.6E-66 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 CS348_19055 7b3de51c92c859f8adb46fcde9f0b321 188 Gene3D G3DSA:3.40.50.1000 4 188 3.7E-66 T 13-10-2018 IPR023214 HAD superfamily CS348_23960 64b7a9e14739d9e4e0f1bd0ea74741b7 476 Pfam PF02646 RmuC family 137 433 1.1E-106 T 13-10-2018 IPR003798 DNA recombination RmuC CS348_19440 078ae3ce66724e801910573141d3dd7e 183 Gene3D G3DSA:2.60.40.1090 27 183 2.9E-34 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_19440 078ae3ce66724e801910573141d3dd7e 183 SUPERFAMILY SSF49401 37 183 2.49E-29 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_19440 078ae3ce66724e801910573141d3dd7e 183 Pfam PF00419 Fimbrial protein 33 182 2.6E-14 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_22100 6850063e99dfcbb620bcc3014e48313d 97 SUPERFAMILY SSF47598 9 87 2.95E-20 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_22100 6850063e99dfcbb620bcc3014e48313d 97 Pfam PF08681 Protein of unknown function (DUF1778) 14 88 1.6E-25 T 13-10-2018 IPR014795 Vibrio phage ICP1, Orf50 CS348_22100 6850063e99dfcbb620bcc3014e48313d 97 Gene3D G3DSA:1.20.5.780 7 91 1.5E-13 T 13-10-2018 CS348_07055 710daab9fd79b550f418de3c6051da4d 737 Pfam PF05231 MASE1 15 320 1.8E-68 T 13-10-2018 IPR007895 MASE1 CS348_07055 710daab9fd79b550f418de3c6051da4d 737 SMART SM00052 492 735 1.1E-101 T 13-10-2018 IPR001633 EAL domain CS348_07055 710daab9fd79b550f418de3c6051da4d 737 SMART SM00267 319 480 1.2E-7 T 13-10-2018 IPR000160 GGDEF domain CS348_07055 710daab9fd79b550f418de3c6051da4d 737 SUPERFAMILY SSF141868 497 735 4.45E-71 T 13-10-2018 IPR035919 EAL domain superfamily CS348_07055 710daab9fd79b550f418de3c6051da4d 737 Gene3D G3DSA:3.20.20.450 491 737 9.0E-77 T 13-10-2018 IPR035919 EAL domain superfamily CS348_07055 710daab9fd79b550f418de3c6051da4d 737 Pfam PF00563 EAL domain 498 730 2.4E-67 T 13-10-2018 IPR001633 EAL domain CS348_05315 5c9bb553382fa461df2eb1ded8f60b97 511 Pfam PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) 2 462 1.6E-92 T 13-10-2018 IPR013381 CRISPR-associated protein Cse1 CS348_05315 5c9bb553382fa461df2eb1ded8f60b97 511 TIGRFAM TIGR02547 casA_cse1: CRISPR type I-E/ECOLI-associated protein CasA/Cse1 2 502 3.6E-180 T 13-10-2018 IPR013381 CRISPR-associated protein Cse1 CS348_08730 b8d5395baaaaa67d583400f232ae8732 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 2 226 2.3E-105 T 13-10-2018 IPR005261 Conserved hypothetical protein CHP00659 CS348_08730 b8d5395baaaaa67d583400f232ae8732 231 Pfam PF04172 LrgB-like family 12 224 1.6E-78 T 13-10-2018 IPR007300 CidB/LrgB family CS348_17640 9507442a67c744a0a6e98864ea4c747d 291 Pfam PF10554 Ash protein family 65 207 2.1E-6 T 13-10-2018 IPR018880 Bacteriophage P4, Ash protein CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 18 40 4.4E-7 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 187 202 4.4E-7 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 SUPERFAMILY SSF51905 11 458 4.99E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 Gene3D G3DSA:3.50.50.60 16 393 2.2E-178 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 SUPERFAMILY SSF54373 220 314 7.06E-35 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 Gene3D G3DSA:3.30.70.20 461 556 5.0E-39 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 Pfam PF13450 NAD(P)-binding Rossmann-like domain 21 66 9.1E-5 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 Gene3D G3DSA:3.30.9.90 88 460 2.2E-178 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 SUPERFAMILY SSF54862 460 560 3.81E-29 T 13-10-2018 CS348_16035 0d940106577c63dfae62ead9ac7d0d9b 561 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 456 559 2.2E-50 T 13-10-2018 CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 SUPERFAMILY SSF52540 84 363 9.49E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 SMART SM00490 270 351 2.0E-30 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 Gene3D G3DSA:3.40.50.300 2 222 6.1E-68 T 13-10-2018 CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.894 T 13-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 Gene3D G3DSA:3.40.50.300 226 396 1.4E-44 T 13-10-2018 CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 Pfam PF00270 DEAD/DEAH box helicase 33 206 2.5E-44 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 Pfam PF00271 Helicase conserved C-terminal domain 243 351 2.4E-28 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_24225 0f2c7a2df5e794423678be1c02e559b8 421 SMART SM00487 28 234 3.3E-52 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_19260 6f00bd00eb6d83f3df73d533cfed9abf 128 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 1.0E-57 T 13-10-2018 IPR020911 Uncharacterised protein family UPF0325 CS348_19260 6f00bd00eb6d83f3df73d533cfed9abf 128 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.544 T 13-10-2018 IPR020911 Uncharacterised protein family UPF0325 CS348_19260 6f00bd00eb6d83f3df73d533cfed9abf 128 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 9.4E-55 T 13-10-2018 IPR020911 Uncharacterised protein family UPF0325 CS348_20365 8b97f6ebf33ec876551c5f2c275e1860 228 Gene3D G3DSA:3.40.1280.10 1 164 1.2E-50 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_20365 8b97f6ebf33ec876551c5f2c275e1860 228 Pfam PF00588 SpoU rRNA Methylase family 3 153 7.8E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CS348_20365 8b97f6ebf33ec876551c5f2c275e1860 228 SUPERFAMILY SSF75217 2 156 1.11E-30 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_20365 8b97f6ebf33ec876551c5f2c275e1860 228 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 225 5.6E-75 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 CS348_20365 8b97f6ebf33ec876551c5f2c275e1860 228 PIRSF PIRSF004808 1 228 9.8E-63 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 Gene3D G3DSA:2.40.30.140 104 209 1.0E-146 T 13-10-2018 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 Gene3D G3DSA:3.20.20.80 5 374 1.0E-146 T 13-10-2018 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 Gene3D G3DSA:2.60.40.1180 408 491 8.7E-27 T 13-10-2018 IPR013780 Glycosyl hydrolase, all-beta CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 SUPERFAMILY SSF51445 6 398 2.72E-92 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 SMART SM00642 4 402 2.8E-58 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 SUPERFAMILY SSF51011 405 491 1.3E-28 T 13-10-2018 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 PIRSF PIRSF001021 1 494 2.0E-215 T 13-10-2018 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 416 491 9.3E-5 T 13-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 CS348_09925 e4348b836ba17f2f7bbc09c0da54fe4b 494 Pfam PF00128 Alpha amylase, catalytic domain 26 367 3.6E-21 T 13-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 CS348_07285 b3ded25486573c00ffb13af00616f879 467 PIRSF PIRSF012293 2 467 6.6E-207 T 13-10-2018 IPR009377 Ethanolamine utilisation EutA CS348_07285 b3ded25486573c00ffb13af00616f879 467 SUPERFAMILY SSF53067 8 266 2.77E-9 T 13-10-2018 CS348_07285 b3ded25486573c00ffb13af00616f879 467 Pfam PF06277 Ethanolamine utilisation protein EutA 5 465 9.3E-178 T 13-10-2018 IPR009377 Ethanolamine utilisation EutA CS348_09795 c5468c45b8b345f26956bd49ae0905d5 306 Pfam PF00892 EamA-like transporter family 14 140 8.2E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_09795 c5468c45b8b345f26956bd49ae0905d5 306 Pfam PF00892 EamA-like transporter family 150 284 9.9E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_09795 c5468c45b8b345f26956bd49ae0905d5 306 SUPERFAMILY SSF103481 185 287 4.38E-12 T 13-10-2018 CS348_09795 c5468c45b8b345f26956bd49ae0905d5 306 SUPERFAMILY SSF103481 43 144 3.01E-11 T 13-10-2018 CS348_14655 5748abba4d42b7cd87928bdb465a557b 37 ProDom PD049682 YCEO INNER MEMBRANE STY1197 1 37 3.0E-13 T 13-10-2018 IPR024494 Protein of unknown function DUF2770 CS348_14655 5748abba4d42b7cd87928bdb465a557b 37 Pfam PF10968 Protein of unknown function (DUF2770) 1 36 1.4E-20 T 13-10-2018 IPR024494 Protein of unknown function DUF2770 CS348_25525 6ca8d62f1fa70a89378a1b9442ce5ae4 142 SUPERFAMILY SSF51306 20 136 7.06E-32 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CS348_25525 6ca8d62f1fa70a89378a1b9442ce5ae4 142 Gene3D G3DSA:2.10.109.10 26 139 3.2E-39 T 13-10-2018 CS348_25525 6ca8d62f1fa70a89378a1b9442ce5ae4 142 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 64 75 8.7E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_25525 6ca8d62f1fa70a89378a1b9442ce5ae4 142 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 53 63 8.7E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_25525 6ca8d62f1fa70a89378a1b9442ce5ae4 142 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 92 104 8.7E-9 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_25525 6ca8d62f1fa70a89378a1b9442ce5ae4 142 Pfam PF00717 Peptidase S24-like 59 119 1.8E-12 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CS348_11965 8987a15080bd0ce4c8668b5a581d0a68 316 Gene3D G3DSA:1.10.1740.30 191 302 1.5E-8 T 13-10-2018 CS348_11965 8987a15080bd0ce4c8668b5a581d0a68 316 Gene3D G3DSA:3.30.2440.10 21 131 4.8E-34 T 13-10-2018 CS348_11965 8987a15080bd0ce4c8668b5a581d0a68 316 Gene3D G3DSA:3.30.390.70 158 298 1.5E-8 T 13-10-2018 CS348_11965 8987a15080bd0ce4c8668b5a581d0a68 316 Pfam PF06767 Sif protein 1 302 4.3E-41 T 13-10-2018 IPR010637 Sif CS348_25450 81f2c3280cdb2003dc8a7e8c1bdb6e4b 75 Pfam PF06006 Bacterial protein of unknown function (DUF905) 7 75 2.9E-36 T 13-10-2018 IPR009253 Protein of unknown function DUF905 CS348_25450 81f2c3280cdb2003dc8a7e8c1bdb6e4b 75 Gene3D G3DSA:3.30.160.130 2 75 1.3E-35 T 13-10-2018 IPR038612 YkfF-like domain superfamily CS348_25450 81f2c3280cdb2003dc8a7e8c1bdb6e4b 75 ProDom PD028015 PLASMID YKFF YDEA R0111 YPJI YPMT1.60C C4569 AEC70 PSLT067 YFJA 8 74 5.0E-21 T 13-10-2018 IPR009253 Protein of unknown function DUF905 CS348_25450 81f2c3280cdb2003dc8a7e8c1bdb6e4b 75 SUPERFAMILY SSF54786 12 75 1.61E-28 T 13-10-2018 CS348_03155 0522bd5970b60ed7ace3d11b69699aff 215 Pfam PF03551 Transcriptional regulator PadR-like family 75 143 9.1E-15 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal CS348_03155 0522bd5970b60ed7ace3d11b69699aff 215 SUPERFAMILY SSF46785 71 189 3.81E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_03155 0522bd5970b60ed7ace3d11b69699aff 215 Gene3D G3DSA:1.10.10.10 58 167 1.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05330 f86c864936e10fbf6973f8ce0b5c1054 241 TIGRFAM TIGR01868 casD_Cas5e: CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI 4 172 3.3E-44 T 13-10-2018 IPR010147 CRISPR-associated protein, CasD GO:0003723|GO:0051607 CS348_05330 f86c864936e10fbf6973f8ce0b5c1054 241 Gene3D G3DSA:3.30.70.2660 1 232 5.6E-59 T 13-10-2018 CS348_05330 f86c864936e10fbf6973f8ce0b5c1054 241 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 4 229 6.7E-40 T 13-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 CS348_05330 f86c864936e10fbf6973f8ce0b5c1054 241 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 4 46 2.4E-13 T 13-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal CS348_13175 630fd84f4de9efe7ea0e07051a53f63a 245 Gene3D G3DSA:3.40.50.880 1 245 8.2E-105 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_13175 630fd84f4de9efe7ea0e07051a53f63a 245 PIRSF PIRSF034405 1 245 4.1E-140 T 13-10-2018 IPR017027 Uncharacterised conserved protein UCP034405 CS348_13175 630fd84f4de9efe7ea0e07051a53f63a 245 Pfam PF07090 Putative glutamine amidotransferase 2 244 5.9E-127 T 13-10-2018 IPR010768 Putative glutamine amidotransferase CS348_13175 630fd84f4de9efe7ea0e07051a53f63a 245 SUPERFAMILY SSF52317 2 241 1.69E-69 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_17140 88d40e6567c3153ea96dc518bbd03213 298 Gene3D G3DSA:1.10.4200.10 48 296 4.0E-8 T 13-10-2018 CS348_17140 88d40e6567c3153ea96dc518bbd03213 298 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 23 292 4.2E-106 T 13-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_17140 88d40e6567c3153ea96dc518bbd03213 298 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 23 291 1.8E-84 T 13-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_17140 88d40e6567c3153ea96dc518bbd03213 298 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 2 298 182.481 T 13-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_02215 774fc7e94d1048a605eb69d5a56ffd2f 184 SUPERFAMILY SSF51161 5 175 1.08E-44 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_02215 774fc7e94d1048a605eb69d5a56ffd2f 184 Gene3D G3DSA:2.160.10.10 1 184 2.6E-60 T 13-10-2018 CS348_02215 774fc7e94d1048a605eb69d5a56ffd2f 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 8.2E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_02215 774fc7e94d1048a605eb69d5a56ffd2f 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 47 1.0E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_08480 a4a24ee82b6dbec2a9f0f77bc5982f18 335 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 1.3E-95 T 13-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 CS348_08480 a4a24ee82b6dbec2a9f0f77bc5982f18 335 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 46.889 T 13-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 SMART SM00893 7 175 2.3E-14 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 188 270 3.6E-27 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 Gene3D G3DSA:3.40.50.620 3 173 4.1E-31 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_13315 a6f8af122617a60f1893664b77a412d6 311 SUPERFAMILY SSF52467 188 309 3.27E-41 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CS348_13315 a6f8af122617a60f1893664b77a412d6 311 SUPERFAMILY SSF52402 6 179 1.47E-25 T 13-10-2018 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 PIRSF PIRSF000089 3 311 8.4E-76 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 Pfam PF01012 Electron transfer flavoprotein domain 19 162 6.4E-16 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 Gene3D G3DSA:3.40.50.1220 183 311 5.2E-46 T 13-10-2018 CS348_13315 a6f8af122617a60f1893664b77a412d6 311 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 13-10-2018 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Reactome: R-HSA-611105 CS348_05350 002eeb0e1155f0e8e0ec14370ffbb201 348 Pfam PF04389 Peptidase family M28 100 329 3.1E-32 T 13-10-2018 IPR007484 Peptidase M28 CS348_05350 002eeb0e1155f0e8e0ec14370ffbb201 348 Gene3D G3DSA:3.40.630.10 32 347 1.0E-41 T 13-10-2018 CS348_05350 002eeb0e1155f0e8e0ec14370ffbb201 348 SUPERFAMILY SSF53187 42 316 2.8E-36 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 1.7E-37 T 13-10-2018 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 1.6E-111 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 SUPERFAMILY SSF118215 9 401 4.05E-121 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 Gene3D G3DSA:1.10.3860.10 1 418 3.4E-122 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 39.138 T 13-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 CS348_01165 be1fe7f6494babc22e2b78c6a92611e3 428 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 Gene3D G3DSA:3.90.780.10 328 518 2.1E-74 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 Gene3D G3DSA:3.60.21.10 17 327 7.4E-121 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 SUPERFAMILY SSF56300 21 326 1.22E-72 T 13-10-2018 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 Pfam PF02872 5'-nucleotidase, C-terminal domain 332 476 1.1E-41 T 13-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 SUPERFAMILY SSF55816 326 512 1.7E-50 T 13-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 PRINTS PR01607 Apyrase family signature 380 403 1.3E-22 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 PRINTS PR01607 Apyrase family signature 235 258 1.3E-22 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 PRINTS PR01607 Apyrase family signature 21 39 1.3E-22 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 PRINTS PR01607 Apyrase family signature 200 217 1.3E-22 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 PRINTS PR01607 Apyrase family signature 450 469 1.3E-22 T 13-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 Pfam PF00149 Calcineurin-like phosphoesterase 24 252 1.7E-11 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CS348_23060 4e00b9e32ef34eced75f71eebaea228a 518 ProSitePatterns PS00786 5'-nucleotidase signature 2. 102 113 - T 13-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 CS348_14025 252845b06cc6967de673471231b15541 82 Pfam PF10798 Biofilm development protein YmgB/AriR 24 81 1.8E-27 T 13-10-2018 IPR024753 Regulatory protein AriR GO:0071468 CS348_14025 252845b06cc6967de673471231b15541 82 ProDom PD865043 PLASMID SPA-ORF10 3'REGION CYTOPLASMIC ORF-10 SPAS STY1854 24 82 7.0E-27 T 13-10-2018 IPR024753 Regulatory protein AriR GO:0071468 CS348_00480 c667c5b482f528a4dfbc34f15d180263 463 Pfam PF00860 Permease family 34 427 1.1E-110 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CS348_00480 c667c5b482f528a4dfbc34f15d180263 463 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 29 457 6.8E-142 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CS348_00480 c667c5b482f528a4dfbc34f15d180263 463 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 375 395 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CS348_18490 da8326e0854460572aea5da18c1050e3 406 Pfam PF05992 SbmA/BacA-like family 80 393 2.1E-165 T 13-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 CS348_18490 da8326e0854460572aea5da18c1050e3 406 SUPERFAMILY SSF90123 77 389 1.02E-7 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_21915 b9622b42c26722af3ca31aebcc698b7d 119 SUPERFAMILY SSF81343 1 119 2.11E-51 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_21915 b9622b42c26722af3ca31aebcc698b7d 119 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 1 119 3.0E-62 T 13-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 CS348_21915 b9622b42c26722af3ca31aebcc698b7d 119 Pfam PF02313 Fumarate reductase subunit D 6 117 8.1E-50 T 13-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 CS348_21915 b9622b42c26722af3ca31aebcc698b7d 119 PIRSF PIRSF000179 1 119 1.0E-50 T 13-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 CS348_21915 b9622b42c26722af3ca31aebcc698b7d 119 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 2 119 26.848 T 13-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 CS348_21915 b9622b42c26722af3ca31aebcc698b7d 119 Gene3D G3DSA:1.20.1300.10 1 119 8.4E-52 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CS348_16255 a1072698ae3f19ca216a7b6f18e8ca79 136 Pfam PF11076 Putative inner membrane protein YbhQ 1 132 2.5E-67 T 13-10-2018 IPR021303 Uncharacterised protein family, inner membrane, YbhQ CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 201 298 5.3E-33 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 Gene3D G3DSA:3.40.190.10 7 221 2.1E-77 T 13-10-2018 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 SUPERFAMILY SSF54913 226 298 1.11E-21 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 Gene3D G3DSA:3.30.70.120 226 299 4.4E-35 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 2.2E-48 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 Gene3D G3DSA:3.40.190.10 103 192 2.1E-77 T 13-10-2018 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 Pfam PF08029 HisG, C-terminal domain 223 296 1.7E-24 T 13-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 36.236 T 13-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 SUPERFAMILY SSF53850 6 224 8.79E-71 T 13-10-2018 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 2.6E-58 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CS348_09295 686a18219bfdc3df974cb762e3c1acf1 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 CS348_01270 18efd2cb51bf50e6d1cb7d7a0b620e62 252 Gene3D G3DSA:3.40.50.150 57 252 3.6E-74 T 13-10-2018 CS348_01270 18efd2cb51bf50e6d1cb7d7a0b620e62 252 SUPERFAMILY SSF53335 5 246 1.51E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_01270 18efd2cb51bf50e6d1cb7d7a0b620e62 252 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 248 38.204 T 13-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 CS348_01270 18efd2cb51bf50e6d1cb7d7a0b620e62 252 Pfam PF04445 Putative SAM-dependent methyltransferase 19 246 1.5E-106 T 13-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 CS348_01270 18efd2cb51bf50e6d1cb7d7a0b620e62 252 Gene3D G3DSA:3.40.1630.10 1 56 6.8E-36 T 13-10-2018 CS348_17030 9961bffbdc57045eb0bcd51560393d73 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 13-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_17030 9961bffbdc57045eb0bcd51560393d73 370 Pfam PF01098 Cell cycle protein 20 364 7.9E-126 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_17030 9961bffbdc57045eb0bcd51560393d73 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 2.2E-137 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_17030 9961bffbdc57045eb0bcd51560393d73 370 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 29.71 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_14605 25a8cd36bdec1658b763a26c5b4195ef 307 Gene3D G3DSA:3.40.50.720 1 120 1.7E-31 T 13-10-2018 CS348_14605 25a8cd36bdec1658b763a26c5b4195ef 307 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 2.9E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_14605 25a8cd36bdec1658b763a26c5b4195ef 307 SUPERFAMILY SSF55347 126 265 9.37E-46 T 13-10-2018 CS348_14605 25a8cd36bdec1658b763a26c5b4195ef 307 Gene3D G3DSA:3.30.360.10 121 307 2.2E-56 T 13-10-2018 CS348_14605 25a8cd36bdec1658b763a26c5b4195ef 307 SUPERFAMILY SSF51735 4 137 1.29E-41 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 Pfam PF00156 Phosphoribosyl transferase domain 286 394 3.0E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 SUPERFAMILY SSF56235 2 259 9.44E-75 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 SUPERFAMILY SSF53271 252 485 3.41E-72 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 1.6E-163 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 PIRSF PIRSF000485 1 483 7.7E-174 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 45.141 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 Pfam PF13522 Glutamine amidotransferase domain 64 202 1.5E-16 T 13-10-2018 CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 Gene3D G3DSA:3.40.50.2020 279 443 4.2E-166 T 13-10-2018 CS348_07825 75f9ec8003d626f10d6a4f3b02a63033 505 Gene3D G3DSA:3.60.20.10 2 414 4.2E-166 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_15560 6b752f577bac439a017b5264bcef821f 107 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.808 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CS348_15560 6b752f577bac439a017b5264bcef821f 107 Gene3D G3DSA:3.30.110.70 2 107 1.7E-48 T 13-10-2018 CS348_15560 6b752f577bac439a017b5264bcef821f 107 SUPERFAMILY SSF117782 1 106 3.14E-38 T 13-10-2018 IPR035439 UPF0145 domain superfamily CS348_15560 6b752f577bac439a017b5264bcef821f 107 Pfam PF01906 Putative heavy-metal-binding 1 104 2.3E-40 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CS348_24310 a4c4ff7d036b31794f438746bc460e3d 32 Pfam PF08046 IlvGEDA operon leader peptide 1 32 1.5E-17 T 13-10-2018 IPR012567 IlvGEDA operon leader peptide GO:0009082 CS348_07780 0bd080bd7c0f13b4853709b1bd335745 333 PIRSF PIRSF020588 1 333 1.0E-166 T 13-10-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 Gene3D G3DSA:1.20.58.220 1 117 7.3E-42 T 13-10-2018 IPR038078 PhoU-like domain superfamily CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 SUPERFAMILY SSF109755 13 229 1.15E-70 T 13-10-2018 CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 Pfam PF01895 PhoU domain 128 213 2.0E-17 T 13-10-2018 IPR026022 PhoU domain CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 Pfam PF01895 PhoU domain 27 111 4.5E-21 T 13-10-2018 IPR026022 PhoU domain CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 6.6E-73 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 PIRSF PIRSF003107 7 226 5.8E-68 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CS348_24555 3cb273fa8efdc7ffc519db46e1fa4a84 241 Gene3D G3DSA:1.20.58.220 119 234 7.5E-33 T 13-10-2018 IPR038078 PhoU-like domain superfamily CS348_05785 a53c0ce379100e56a78a13fc9099e089 307 Pfam PF00146 NADH dehydrogenase 9 302 6.8E-49 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05785 a53c0ce379100e56a78a13fc9099e089 307 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 194 207 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05785 a53c0ce379100e56a78a13fc9099e089 307 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 38 53 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23165 c94067bfbe84281b8e59ff062d5df707 248 Gene3D G3DSA:3.40.50.80 97 248 2.2E-40 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_23165 c94067bfbe84281b8e59ff062d5df707 248 Gene3D G3DSA:2.40.30.10 1 96 5.5E-33 T 13-10-2018 CS348_23165 c94067bfbe84281b8e59ff062d5df707 248 Pfam PF00970 Oxidoreductase FAD-binding domain 18 90 2.5E-7 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CS348_23165 c94067bfbe84281b8e59ff062d5df707 248 SUPERFAMILY SSF63380 3 100 2.51E-25 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_23165 c94067bfbe84281b8e59ff062d5df707 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 8.0E-18 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CS348_23165 c94067bfbe84281b8e59ff062d5df707 248 SUPERFAMILY SSF52343 103 248 9.17E-38 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_23910 cca3507e16743e0d8356552d13b21186 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 5.2E-22 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CS348_23910 cca3507e16743e0d8356552d13b21186 233 Gene3D G3DSA:3.40.50.80 99 233 2.3E-31 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_23910 cca3507e16743e0d8356552d13b21186 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 6.3E-14 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_23910 cca3507e16743e0d8356552d13b21186 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 6.3E-14 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_23910 cca3507e16743e0d8356552d13b21186 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 6.3E-14 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_23910 cca3507e16743e0d8356552d13b21186 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 6.3E-14 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_23910 cca3507e16743e0d8356552d13b21186 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 6.3E-14 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CS348_23910 cca3507e16743e0d8356552d13b21186 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 67 3.3E-6 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CS348_23910 cca3507e16743e0d8356552d13b21186 233 Gene3D G3DSA:2.40.30.10 2 98 2.1E-24 T 13-10-2018 CS348_23910 cca3507e16743e0d8356552d13b21186 233 SUPERFAMILY SSF63380 3 97 1.22E-22 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CS348_23910 cca3507e16743e0d8356552d13b21186 233 SUPERFAMILY SSF52343 100 231 4.58E-37 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 3.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 3.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 Gene3D G3DSA:3.40.50.720 1 236 4.6E-76 T 13-10-2018 CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 SUPERFAMILY SSF51735 6 234 5.79E-66 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 182 1.7E-4 T 13-10-2018 CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 8.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 8.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 8.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 8.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 8.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 199 219 8.4E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11565 aa1aa64b33319a4d8abf2dfa9b1d20ec 237 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 233 1.0E-53 T 13-10-2018 CS348_14630 e2c8aa485a0e2ff2eaed48915c2dd4cb 186 Gene3D G3DSA:3.15.10.40 16 186 1.3E-73 T 13-10-2018 CS348_14630 e2c8aa485a0e2ff2eaed48915c2dd4cb 186 Pfam PF07273 Protein of unknown function (DUF1439) 27 178 7.1E-55 T 13-10-2018 IPR010835 Protein of unknown function DUF1439 CS348_16725 41d10079efd079ab07998d70fbcef927 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 7 29 7.9E-6 T 13-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 CS348_16725 41d10079efd079ab07998d70fbcef927 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 1.6E-9 T 13-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 CS348_16475 aaa36cedefe04bd9a9a886929811155a 346 Gene3D G3DSA:2.70.98.10 8 344 2.8E-113 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 CS348_16475 aaa36cedefe04bd9a9a886929811155a 346 Pfam PF01263 Aldose 1-epimerase 17 342 7.7E-89 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CS348_16475 aaa36cedefe04bd9a9a886929811155a 346 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 171 180 - T 13-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 CS348_16475 aaa36cedefe04bd9a9a886929811155a 346 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 12 343 6.5E-146 T 13-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 CS348_16475 aaa36cedefe04bd9a9a886929811155a 346 PIRSF PIRSF005096 2 345 5.1E-124 T 13-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 CS348_16475 aaa36cedefe04bd9a9a886929811155a 346 SUPERFAMILY SSF74650 5 343 3.52E-108 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_23145 9261217065c3c2da1d299fc6a31091eb 79 Pfam PF06005 Cell division protein ZapB 1 78 1.4E-24 T 13-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 CS348_23145 9261217065c3c2da1d299fc6a31091eb 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 18.412 T 13-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 CS348_23145 9261217065c3c2da1d299fc6a31091eb 79 Gene3D G3DSA:1.20.5.340 1 79 3.6E-33 T 13-10-2018 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 376 5.4E-84 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 293 9.8E-12 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 Gene3D G3DSA:2.40.420.20 284 376 1.1E-25 T 13-10-2018 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 SUPERFAMILY SSF111369 52 300 7.85E-89 T 13-10-2018 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 Pfam PF00529 HlyD membrane-fusion protein of T1SS 294 361 1.9E-10 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 Gene3D G3DSA:2.40.30.170 58 283 1.7E-87 T 13-10-2018 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 Gene3D G3DSA:1.10.287.470 99 172 1.7E-87 T 13-10-2018 CS348_17985 336a110e1fc28c3f973b8a9ce901333d 397 Gene3D G3DSA:2.40.50.100 64 208 1.7E-87 T 13-10-2018 CS348_15100 82dc9c3369353e4d4433954f5743d272 105 SUPERFAMILY SSF141255 4 95 2.22E-30 T 13-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 CS348_15100 82dc9c3369353e4d4433954f5743d272 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 38.838 T 13-10-2018 IPR022866 Heat shock protein HspQ CS348_15100 82dc9c3369353e4d4433954f5743d272 105 SMART SM00992 3 102 5.8E-36 T 13-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CS348_15100 82dc9c3369353e4d4433954f5743d272 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 6.1E-20 T 13-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CS348_15100 82dc9c3369353e4d4433954f5743d272 105 Gene3D G3DSA:2.30.30.390 1 105 1.3E-42 T 13-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 CS348_15100 82dc9c3369353e4d4433954f5743d272 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 102 1.3E-34 T 13-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 CS348_04960 cd4dededee46968e6d0f7f4c78a19465 72 SUPERFAMILY SSF50182 21 71 3.11E-19 T 13-10-2018 IPR010920 LSM domain superfamily CS348_04960 cd4dededee46968e6d0f7f4c78a19465 72 Gene3D G3DSA:2.30.30.100 19 72 4.6E-29 T 13-10-2018 CS348_04960 cd4dededee46968e6d0f7f4c78a19465 72 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 1.5E-25 T 13-10-2018 IPR010305 Protein of unknown function DUF903 CS348_00835 69a8e70bb276b36b332d2cd07773b0d2 220 SMART SM00934 5 207 1.1E-32 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_00835 69a8e70bb276b36b332d2cd07773b0d2 220 Gene3D G3DSA:3.20.20.70 1 216 5.1E-73 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00835 69a8e70bb276b36b332d2cd07773b0d2 220 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 206 9.7E-24 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CS348_00835 69a8e70bb276b36b332d2cd07773b0d2 220 SUPERFAMILY SSF51366 2 216 1.1E-34 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_10590 da4bbcb4a268fccf8ef25f523502d061 293 Gene3D G3DSA:3.30.2010.10 64 157 1.6E-36 T 13-10-2018 CS348_10590 da4bbcb4a268fccf8ef25f523502d061 293 Hamap MF_00188 Protease HtpX [htpX]. 1 289 27.157 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 CS348_10590 da4bbcb4a268fccf8ef25f523502d061 293 Pfam PF01435 Peptidase family M48 73 288 3.1E-39 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CS348_19960 a433fddb9dc83fb9a0afee1fa95a7a50 446 Gene3D G3DSA:1.20.1250.20 13 435 1.2E-87 T 13-10-2018 CS348_19960 a433fddb9dc83fb9a0afee1fa95a7a50 446 SUPERFAMILY SSF103473 7 429 7.59E-76 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_19960 a433fddb9dc83fb9a0afee1fa95a7a50 446 Pfam PF00083 Sugar (and other) transporter 28 432 6.6E-50 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_20565 ee0b76c022f545cd661792d334ebc3cd 825 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 120 492 7.4E-16 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_20565 ee0b76c022f545cd661792d334ebc3cd 825 Pfam PF10145 Phage-related minor tail protein 160 372 1.8E-18 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 SUPERFAMILY SSF53067 250 483 2.07E-31 T 13-10-2018 CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 Gene3D G3DSA:3.30.420.40 5 247 9.9E-54 T 13-10-2018 CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 PIRSF PIRSF000538 5 460 4.2E-68 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 256 446 1.2E-25 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 Gene3D G3DSA:3.30.420.40 249 485 1.7E-31 T 13-10-2018 CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 245 5.3E-45 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CS348_00290 6e4bcb522e01488aa3e037fb93bf6a93 494 SUPERFAMILY SSF53067 8 247 4.44E-46 T 13-10-2018 CS348_06810 3be9901bc6ed226aaadd671866b87a2c 347 Pfam PF17179 4Fe-4S dicluster domain 229 326 8.3E-31 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_06810 3be9901bc6ed226aaadd671866b87a2c 347 TIGRFAM TIGR02910 sulfite_red_A: sulfite reductase, subunit A 1 342 3.9E-182 T 13-10-2018 IPR014259 Sulphite reductase, subunit A CS348_06810 3be9901bc6ed226aaadd671866b87a2c 347 SUPERFAMILY SSF46548 201 341 1.22E-14 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CS348_06810 3be9901bc6ed226aaadd671866b87a2c 347 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 312 323 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_04420 4822edcfc14b588934bde5abfc78056b 239 Pfam PF11101 Protein of unknown function (DUF2884) 24 236 1.8E-40 T 13-10-2018 IPR021307 Protein of unknown function DUF2884 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 Gene3D G3DSA:2.60.40.10 148 223 2.0E-20 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 SUPERFAMILY SSF49354 28 146 3.14E-39 T 13-10-2018 IPR008962 PapD-like superfamily CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 146 1.8E-37 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 PRINTS PR00969 Pili chaperone signature 128 143 5.0E-32 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 PRINTS PR00969 Pili chaperone signature 29 38 5.0E-32 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 PRINTS PR00969 Pili chaperone signature 74 95 5.0E-32 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 PRINTS PR00969 Pili chaperone signature 163 178 5.0E-32 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 PRINTS PR00969 Pili chaperone signature 102 119 5.0E-32 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 SUPERFAMILY SSF49584 140 222 6.8E-17 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 168 220 3.8E-11 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_20255 d485915f2e6ca4043dbfec123decb64d 228 Gene3D G3DSA:2.60.40.10 29 144 9.4E-40 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_05625 7afe05cdc631fa4186ed5783bae77a23 130 SUPERFAMILY SSF69635 2 127 9.42E-31 T 13-10-2018 CS348_05625 7afe05cdc631fa4186ed5783bae77a23 130 Pfam PF05932 Tir chaperone protein (CesT) family 7 120 7.9E-8 T 13-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 CS348_05625 7afe05cdc631fa4186ed5783bae77a23 130 Gene3D G3DSA:3.30.1460.10 1 130 1.6E-35 T 13-10-2018 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 SUPERFAMILY SSF53335 7 282 8.81E-67 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 PIRSF PIRSF000398 5 288 2.6E-60 T 13-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 TIGRFAM TIGR00571 dam: DNA adenine methylase 8 282 5.3E-75 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 Gene3D G3DSA:3.40.50.150 11 255 6.9E-69 T 13-10-2018 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 195 201 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 35 49 3.3E-13 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 54 67 3.3E-13 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 192 204 3.3E-13 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 13 29 3.3E-13 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 Gene3D G3DSA:1.10.1020.10 61 167 6.9E-69 T 13-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 CS348_13440 83edd225e9bce2ba20fad42c230e9d3d 312 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 13 268 3.4E-51 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CS348_14000 3180bfc60135336dc45eaf3a6c390bf1 120 PIRSF PIRSF020632 1 120 4.9E-50 T 13-10-2018 IPR014510 Tellurite resistance predicted, YeaR CS348_14000 3180bfc60135336dc45eaf3a6c390bf1 120 Pfam PF09313 Domain of unknown function (DUF1971) 12 96 2.1E-23 T 13-10-2018 IPR015392 Domain of unknown function DUF1971 CS348_14000 3180bfc60135336dc45eaf3a6c390bf1 120 Gene3D G3DSA:2.60.120.10 1 120 3.5E-54 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_14000 3180bfc60135336dc45eaf3a6c390bf1 120 SUPERFAMILY SSF51197 1 106 1.14E-33 T 13-10-2018 CS348_10655 76c8faddbaae3a1a7c727554f339bb1b 283 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 11 281 2.3E-147 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 CS348_10655 76c8faddbaae3a1a7c727554f339bb1b 283 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 12 281 6.0E-112 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 Pfam PF04055 Radical SAM superfamily 27 229 3.3E-22 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 TIGRFAM TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family 5 282 3.1E-118 T 13-10-2018 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 47 58 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 SUPERFAMILY SSF54862 43 131 4.19E-16 T 13-10-2018 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 SUPERFAMILY SSF102114 85 269 3.14E-12 T 13-10-2018 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 76 87 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 ProSitePatterns PS01087 Radical activating enzymes signature. 19 40 - T 13-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 Pfam PF13353 4Fe-4S single cluster domain 17 179 1.2E-9 T 13-10-2018 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 Gene3D G3DSA:3.30.70.20 44 86 3.6E-10 T 13-10-2018 CS348_20810 65d6cb3e77c3d5d53dfa3eda1516f045 287 PIRSF PIRSF000371 1 287 6.3E-91 T 13-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 CS348_05085 b26b2d47764240e14c10b75cc2e5d9e0 75 SUPERFAMILY SSF50182 23 72 5.18E-19 T 13-10-2018 IPR010920 LSM domain superfamily CS348_05085 b26b2d47764240e14c10b75cc2e5d9e0 75 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 71 1.9E-24 T 13-10-2018 IPR010305 Protein of unknown function DUF903 CS348_05085 b26b2d47764240e14c10b75cc2e5d9e0 75 Gene3D G3DSA:2.30.30.100 20 75 1.9E-29 T 13-10-2018 CS348_14905 e7d431783663fa957987af9cb593f973 207 Gene3D G3DSA:3.40.30.10 35 207 1.8E-48 T 13-10-2018 CS348_14905 e7d431783663fa957987af9cb593f973 207 SUPERFAMILY SSF52833 34 198 1.59E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_14905 e7d431783663fa957987af9cb593f973 207 ProSitePatterns PS00194 Thioredoxin family active site. 58 76 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_14905 e7d431783663fa957987af9cb593f973 207 Pfam PF01323 DSBA-like thioredoxin domain 57 195 3.6E-24 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CS348_01360 04e45797cab95a93a3a5cabf6579688a 208 Pfam PF07947 YhhN family 26 206 6.6E-42 T 13-10-2018 IPR012506 YhhN-like GO:0016021 CS348_01960 b072295c50ca6968ff5c830de33e728d 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.21 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CS348_01960 b072295c50ca6968ff5c830de33e728d 156 PIRSF PIRSF002122 3 156 4.5E-63 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 CS348_01960 b072295c50ca6968ff5c830de33e728d 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_01960 b072295c50ca6968ff5c830de33e728d 156 Gene3D G3DSA:1.10.455.10 2 155 5.2E-65 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily CS348_01960 b072295c50ca6968ff5c830de33e728d 156 SUPERFAMILY SSF47973 6 149 7.72E-60 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily CS348_01960 b072295c50ca6968ff5c830de33e728d 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.0E-71 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CS348_01960 b072295c50ca6968ff5c830de33e728d 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.3E-64 T 13-10-2018 IPR023798 Ribosomal protein S7 domain CS348_07990 ce7663744202f0e19daa52f75d73e360 404 Pfam PF00155 Aminotransferase class I and II 35 394 3.4E-47 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_07990 ce7663744202f0e19daa52f75d73e360 404 SUPERFAMILY SSF53383 7 401 7.66E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_07990 ce7663744202f0e19daa52f75d73e360 404 Gene3D G3DSA:3.40.640.10 53 294 1.1E-149 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_07990 ce7663744202f0e19daa52f75d73e360 404 Gene3D G3DSA:3.90.1150.10 21 398 1.1E-149 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_06735 eb8799315ad684a12b465f6d1f11fe0e 254 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 23 229 1.0E-102 T 13-10-2018 CS348_06735 eb8799315ad684a12b465f6d1f11fe0e 254 Pfam PF13942 YfhG lipoprotein 55 228 1.2E-75 T 13-10-2018 IPR025262 Quorum-sensing regulator protein G CS348_11360 b66e08fd6c9d13839bb71391f7c7326f 72 Pfam PF05433 Glycine zipper 2TM domain 34 71 8.0E-8 T 13-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 CS348_11360 b66e08fd6c9d13839bb71391f7c7326f 72 ProDom PD052686 LIPOPROTEIN INDUCIBLE OSMOTICALLY B PRECURSOR SIGNAL MEMBRANE PALMITATE TRANSMEMBRANE SURFACE 12 34 2.0E-6 T 13-10-2018 CS348_02420 a413ce9666e37822327f5916282d1f3b 87 Pfam PF07338 Protein of unknown function (DUF1471) 35 87 1.8E-22 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_02420 a413ce9666e37822327f5916282d1f3b 87 Gene3D G3DSA:3.30.1660.10 22 87 1.4E-23 T 13-10-2018 IPR025543 Dodecin-like CS348_02420 a413ce9666e37822327f5916282d1f3b 87 SUPERFAMILY SSF159871 3 87 2.22E-28 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_16170 398108cc0a88bc3b760706282fa5565e 295 Pfam PF00892 EamA-like transporter family 148 277 3.0E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_16170 398108cc0a88bc3b760706282fa5565e 295 SUPERFAMILY SSF103481 186 278 1.18E-9 T 13-10-2018 CS348_16170 398108cc0a88bc3b760706282fa5565e 295 SUPERFAMILY SSF103481 46 136 1.31E-6 T 13-10-2018 CS348_24100 f7436d4f937a7c7d613e5d0f67cad5b8 848 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 13-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 CS348_24100 f7436d4f937a7c7d613e5d0f67cad5b8 848 Pfam PF01295 Adenylate cyclase, class-I 228 825 1.1E-257 T 13-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 CS348_24100 f7436d4f937a7c7d613e5d0f67cad5b8 848 PIRSF PIRSF001444 1 847 0.0 T 13-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 CS348_24100 f7436d4f937a7c7d613e5d0f67cad5b8 848 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 13-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 CS348_24100 f7436d4f937a7c7d613e5d0f67cad5b8 848 Pfam PF12633 Adenylate cyclase NT domain 5 200 1.4E-80 T 13-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 CS348_01630 6c73902f8379283a838ac430b4578fb3 304 Pfam PF04754 Putative transposase, YhgA-like 8 209 7.3E-92 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_01630 6c73902f8379283a838ac430b4578fb3 304 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 300 1.5E-58 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_02880 009757f27a4035ba396acdb585b137d4 147 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 3 140 34.718 T 13-10-2018 IPR011194 Uncharacterised protein family UPF0306 CS348_02880 009757f27a4035ba396acdb585b137d4 147 Gene3D G3DSA:2.30.110.10 3 140 6.2E-12 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CS348_02880 009757f27a4035ba396acdb585b137d4 147 SUPERFAMILY SSF50475 6 140 1.07E-17 T 13-10-2018 CS348_02880 009757f27a4035ba396acdb585b137d4 147 PIRSF PIRSF009554 1 145 1.1E-58 T 13-10-2018 IPR011194 Uncharacterised protein family UPF0306 CS348_02450 07e4fc33554591d2f6b25305eeed8654 299 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 11 282 4.5E-94 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CS348_02450 07e4fc33554591d2f6b25305eeed8654 299 Pfam PF05681 Fumarate hydratase (Fumerase) 13 281 2.0E-78 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CS348_23575 e70963d9133a8eccdfe2f59fe69f7d78 188 Pfam PF01381 Helix-turn-helix 21 70 2.4E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_23575 e70963d9133a8eccdfe2f59fe69f7d78 188 SUPERFAMILY SSF47413 9 75 6.19E-15 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_23575 e70963d9133a8eccdfe2f59fe69f7d78 188 SMART SM00530 17 72 2.6E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_23575 e70963d9133a8eccdfe2f59fe69f7d78 188 Gene3D G3DSA:2.60.120.10 102 188 7.0E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_23575 e70963d9133a8eccdfe2f59fe69f7d78 188 SUPERFAMILY SSF51182 65 184 1.54E-18 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_23575 e70963d9133a8eccdfe2f59fe69f7d78 188 Gene3D G3DSA:1.10.260.40 8 83 1.5E-16 T 13-10-2018 CS348_23230 4db02918648c4f255bb19f1ebe3ea0e9 116 SUPERFAMILY SSF51182 24 115 2.94E-24 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_23230 4db02918648c4f255bb19f1ebe3ea0e9 116 Pfam PF07883 Cupin domain 31 98 3.1E-18 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_23230 4db02918648c4f255bb19f1ebe3ea0e9 116 Gene3D G3DSA:2.60.120.10 7 113 6.2E-22 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_18480 2fbc6bf3a9aa3b505ba4bac6b71e16b6 102 ProDom PD068630 MEMBRANE INNER YAIY TRANSMEMBRANE 1 102 5.0E-55 T 13-10-2018 IPR020513 Uncharacterised protein family, inner membrane YaiY GO:0016021 CS348_18480 2fbc6bf3a9aa3b505ba4bac6b71e16b6 102 Pfam PF10954 Protein of unknown function (DUF2755) 1 101 3.4E-51 T 13-10-2018 IPR020513 Uncharacterised protein family, inner membrane YaiY GO:0016021 CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 Gene3D G3DSA:2.40.128.130 634 955 1.2E-98 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 Gene3D G3DSA:2.160.20.20 58 558 1.8E-60 T 13-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 SMART SM00869 676 944 1.5E-43 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 SUPERFAMILY SSF51126 57 559 5.65E-53 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 455 955 1.6E-121 T 13-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 SUPERFAMILY SSF103515 639 955 4.05E-48 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 Pfam PF03212 Pertactin 438 555 2.0E-8 T 13-10-2018 IPR004899 Pertactin, central region CS348_00425 dcdb5ef69b549e29ee00cf97a8880618 955 Pfam PF03797 Autotransporter beta-domain 679 933 5.2E-48 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 Pfam PF00196 Bacterial regulatory proteins, luxR family 136 183 3.8E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 150 1.8E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 166 1.8E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 178 1.8E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 ProSitePatterns PS00622 LuxR-type HTH domain signature. 150 177 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 SUPERFAMILY SSF46894 121 185 9.86E-16 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 Gene3D G3DSA:1.10.10.10 121 189 5.8E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21930 ffd7e2dc4dc23ea8e964b636cb2d67e9 195 SMART SM00421 133 190 4.3E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_21685 8862385a9200f4065812180a3b869c29 284 SUPERFAMILY SSF51658 21 273 4.45E-55 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_21685 8862385a9200f4065812180a3b869c29 284 Pfam PF01261 Xylose isomerase-like TIM barrel 25 230 2.8E-33 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_21685 8862385a9200f4065812180a3b869c29 284 Gene3D G3DSA:3.20.20.150 1 284 3.4E-87 T 13-10-2018 CS348_21685 8862385a9200f4065812180a3b869c29 284 Hamap MF_01951 L-ribulose-5-phosphate 3-epimerase UlaE [ulaE]. 1 284 79.231 T 13-10-2018 IPR023492 L-ribulose-5-phosphate 3-epimerase, Enterobacteriaceae GO:0034015 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 CS348_21685 8862385a9200f4065812180a3b869c29 284 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 4 281 4.3E-150 T 13-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 CS348_06520 3a49718ba8cb7f26d24e63f131fd0898 151 Pfam PF14328 Domain of unknown function (DUF4385) 7 148 1.5E-66 T 13-10-2018 IPR025494 Protein of unknown function DUF4385 CS348_09115 60e957d5419b6ca059c1621f9300a705 373 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 346 6.7E-162 T 13-10-2018 IPR016040 NAD(P)-binding domain CS348_09115 60e957d5419b6ca059c1621f9300a705 373 Gene3D G3DSA:3.40.50.720 5 337 1.6E-169 T 13-10-2018 CS348_09115 60e957d5419b6ca059c1621f9300a705 373 Hamap MF_00955 GDP-mannose 4,6-dehydratase [gmd]. 3 356 56.635 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 CS348_09115 60e957d5419b6ca059c1621f9300a705 373 Gene3D G3DSA:3.90.25.10 193 351 1.6E-169 T 13-10-2018 CS348_09115 60e957d5419b6ca059c1621f9300a705 373 SUPERFAMILY SSF51735 2 353 9.02E-91 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09115 60e957d5419b6ca059c1621f9300a705 373 TIGRFAM TIGR01472 gmd: GDP-mannose 4,6-dehydratase 3 353 8.1E-178 T 13-10-2018 IPR006368 GDP-mannose 4,6-dehydratase GO:0008446|GO:0019673 KEGG: 00051+4.2.1.47|KEGG: 00520+4.2.1.47|MetaCyc: PWY-5738|MetaCyc: PWY-5739|MetaCyc: PWY-5740|MetaCyc: PWY-66|MetaCyc: PWY-7573|Reactome: R-HSA-6787639 CS348_07575 4bdd35eaca3d1501bce0c6b0f23951f7 118 SUPERFAMILY SSF46689 20 111 5.2E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_07575 4bdd35eaca3d1501bce0c6b0f23951f7 118 Pfam PF08765 Mor transcription activator family 21 110 8.8E-11 T 13-10-2018 IPR014875 Mor transcription activator CS348_07040 2cea7e8955df54d6804c80d357b9728d 172 Pfam PF05433 Glycine zipper 2TM domain 73 113 3.9E-6 T 13-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 CS348_05870 c84ba7fce5e5d5c5dde3b3200c6789a2 323 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 230 322 2.2E-42 T 13-10-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 CS348_05870 c84ba7fce5e5d5c5dde3b3200c6789a2 323 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 3 323 8.1E-187 T 13-10-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 CS348_05870 c84ba7fce5e5d5c5dde3b3200c6789a2 323 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 4 175 4.0E-69 T 13-10-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 CS348_13275 146de950de362106e5c4c508174410ca 403 Gene3D G3DSA:1.20.1250.20 210 398 3.9E-16 T 13-10-2018 CS348_13275 146de950de362106e5c4c508174410ca 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 62 79 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_13275 146de950de362106e5c4c508174410ca 403 Pfam PF07690 Major Facilitator Superfamily 12 352 1.3E-30 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_13275 146de950de362106e5c4c508174410ca 403 SUPERFAMILY SSF103473 5 392 3.79E-45 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_13275 146de950de362106e5c4c508174410ca 403 Gene3D G3DSA:1.20.1250.20 1 188 1.4E-20 T 13-10-2018 CS348_05710 f7402a7bfacead41c0496c7aa811c6da 282 SUPERFAMILY SSF81345 4 263 4.45E-38 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_05710 f7402a7bfacead41c0496c7aa811c6da 282 Pfam PF00950 ABC 3 transport family 11 266 1.3E-78 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CS348_05710 f7402a7bfacead41c0496c7aa811c6da 282 Gene3D G3DSA:1.10.3470.10 37 275 8.1E-8 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_13185 0be8b135221c853f111da2ef221a1446 447 Gene3D G3DSA:1.20.1740.10 2 444 2.5E-64 T 13-10-2018 CS348_13185 0be8b135221c853f111da2ef221a1446 447 Pfam PF13520 Amino acid permease 16 409 2.4E-34 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_13185 0be8b135221c853f111da2ef221a1446 447 PIRSF PIRSF006060 1 438 6.0E-56 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_13900 4fd14a02954d4e72dbfc3b496d3787a4 294 Pfam PF01263 Aldose 1-epimerase 27 277 6.7E-44 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CS348_13900 4fd14a02954d4e72dbfc3b496d3787a4 294 PIRSF PIRSF016020 10 294 2.1E-52 T 13-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 CS348_13900 4fd14a02954d4e72dbfc3b496d3787a4 294 SUPERFAMILY SSF74650 8 270 1.38E-66 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_13900 4fd14a02954d4e72dbfc3b496d3787a4 294 Gene3D G3DSA:2.70.98.10 1 294 4.9E-104 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Gene3D G3DSA:3.10.20.410 61 172 2.3E-9 T 13-10-2018 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Pfam PF00577 Outer membrane usher protein 199 742 6.2E-101 T 13-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Gene3D G3DSA:2.60.40.2610 656 747 1.1E-17 T 13-10-2018 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 SUPERFAMILY SSF141729 69 174 4.84E-14 T 13-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Pfam PF13953 PapC C-terminal domain 757 809 9.4E-7 T 13-10-2018 IPR025949 PapC-like, C-terminal domain CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Pfam PF13954 PapC N-terminal domain 43 184 1.4E-16 T 13-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Gene3D G3DSA:2.60.40.2070 748 825 2.5E-7 T 13-10-2018 CS348_24845 3b5e9a2069f6c54e61d9a42a24a1920a 825 Gene3D G3DSA:2.60.40.3110 269 356 4.0E-21 T 13-10-2018 CS348_06760 2425d13f4ad8d2a425d4f09fee10da1c 447 Gene3D G3DSA:1.20.1740.10 2 444 4.0E-60 T 13-10-2018 CS348_06760 2425d13f4ad8d2a425d4f09fee10da1c 447 PIRSF PIRSF006060 2 447 2.0E-54 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_06760 2425d13f4ad8d2a425d4f09fee10da1c 447 Pfam PF13520 Amino acid permease 7 416 4.2E-39 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_06760 2425d13f4ad8d2a425d4f09fee10da1c 447 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 4 433 1.1E-139 T 13-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 SUPERFAMILY SSF54631 288 422 7.96E-23 T 13-10-2018 CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 Pfam PF03741 Integral membrane protein TerC family 14 203 3.6E-49 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 Gene3D G3DSA:3.30.465.10 435 512 1.2E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 Pfam PF03471 Transporter associated domain 434 510 8.5E-17 T 13-10-2018 IPR005170 Transporter-associated domain CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 SMART SM01091 431 512 2.2E-20 T 13-10-2018 IPR005170 Transporter-associated domain CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 SUPERFAMILY SSF56176 434 518 9.82E-17 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_10675 3c8b2d08f2d7cded236dd9af4ecdef67 519 Gene3D G3DSA:3.10.580.10 281 434 1.3E-41 T 13-10-2018 CS348_12830 4bec50aff4ddfdd3c423222f8a28e058 109 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 35 96 1.4E-14 T 13-10-2018 IPR018660 C-type lysozyme inhibitor CS348_12830 4bec50aff4ddfdd3c423222f8a28e058 109 SUPERFAMILY SSF141488 28 107 2.48E-21 T 13-10-2018 IPR036328 C-type lysozyme inhibitor superfamily CS348_12830 4bec50aff4ddfdd3c423222f8a28e058 109 Gene3D G3DSA:2.40.128.200 28 109 5.3E-27 T 13-10-2018 IPR036328 C-type lysozyme inhibitor superfamily CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 25.814 T 13-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.6E-15 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 PRINTS PR01249 Ribosomal protein L31 signature 44 59 5.6E-15 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 PRINTS PR01249 Ribosomal protein L31 signature 59 77 5.6E-15 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 SUPERFAMILY SSF143800 1 80 2.24E-21 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 Gene3D G3DSA:2.30.170.50 1 82 9.5E-23 T 13-10-2018 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 4.7E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_18020 87a8ece1c565bc9c0be5c4860634700e 86 Pfam PF01197 Ribosomal protein L31 1 78 3.2E-24 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_04445 5596f985d6aeacee19c2a81263c50fc0 96 Gene3D G3DSA:3.30.1200.10 1 96 4.7E-37 T 13-10-2018 IPR036591 YggU-like superfamily CS348_04445 5596f985d6aeacee19c2a81263c50fc0 96 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 19.918 T 13-10-2018 IPR003746 Protein of unknown function DUF167 CS348_04445 5596f985d6aeacee19c2a81263c50fc0 96 SUPERFAMILY SSF69786 3 93 2.49E-31 T 13-10-2018 IPR036591 YggU-like superfamily CS348_04445 5596f985d6aeacee19c2a81263c50fc0 96 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 4 91 4.4E-33 T 13-10-2018 IPR005228 Conserved hypothetical protein CHP00251 CS348_04445 5596f985d6aeacee19c2a81263c50fc0 96 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 10 81 2.1E-25 T 13-10-2018 IPR003746 Protein of unknown function DUF167 CS348_04445 5596f985d6aeacee19c2a81263c50fc0 96 SMART SM01152 7 83 1.4E-36 T 13-10-2018 IPR003746 Protein of unknown function DUF167 CS348_06135 14f77cad5adf921a53a2cdbdbdf59461 422 Gene3D G3DSA:3.30.9.10 86 352 5.2E-79 T 13-10-2018 CS348_06135 14f77cad5adf921a53a2cdbdbdf59461 422 Gene3D G3DSA:3.50.50.60 3 386 5.2E-79 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_06135 14f77cad5adf921a53a2cdbdbdf59461 422 Pfam PF01266 FAD dependent oxidoreductase 3 390 1.9E-69 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CS348_06135 14f77cad5adf921a53a2cdbdbdf59461 422 SUPERFAMILY SSF51905 1 291 1.73E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_06135 14f77cad5adf921a53a2cdbdbdf59461 422 Hamap MF_00990 L-2-hydroxyglutarate oxidase LhgO [lhgO]. 1 422 84.327 T 13-10-2018 IPR030862 L-2-hydroxyglutarate oxidase LhgO GO:0034419 KEGG: 00630+1.1.3.15|MetaCyc: PWY-181 CS348_14365 2babed0e728cdab87e83dc341ec8e781 341 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 13-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 CS348_14365 2babed0e728cdab87e83dc341ec8e781 341 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 332 48.095 T 13-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 CS348_14365 2babed0e728cdab87e83dc341ec8e781 341 Gene3D G3DSA:3.20.20.300 1 341 3.7E-143 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 CS348_14365 2babed0e728cdab87e83dc341ec8e781 341 SUPERFAMILY SSF51445 3 313 9.05E-86 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CS348_14365 2babed0e728cdab87e83dc341ec8e781 341 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 9 317 4.8E-99 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CS348_11505 92db0210ada85b9033ffb3f06767dbc8 72 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 11 71 7.5E-34 T 13-10-2018 IPR014321 Phage shock protein, PspD CS348_11505 92db0210ada85b9033ffb3f06767dbc8 72 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 13 71 3.8E-35 T 13-10-2018 IPR014321 Phage shock protein, PspD CS348_06865 67b82b454ab09fc56c116de8f23413cf 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 1.8E-33 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 CS348_06865 67b82b454ab09fc56c116de8f23413cf 66 Gene3D G3DSA:1.10.10.600 1 66 4.0E-33 T 13-10-2018 IPR036762 IscX-like superfamily CS348_06865 67b82b454ab09fc56c116de8f23413cf 66 PIRSF PIRSF039003 3 66 7.1E-34 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 CS348_06865 67b82b454ab09fc56c116de8f23413cf 66 SUPERFAMILY SSF140319 3 64 6.02E-28 T 13-10-2018 IPR036762 IscX-like superfamily CS348_06865 67b82b454ab09fc56c116de8f23413cf 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 1.1E-33 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 CS348_13075 b17133bb15171f9bb36d50b0094d1db1 484 Pfam PF04888 Secretion system effector C (SseC) like family 93 480 5.6E-76 T 13-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 CS348_17500 d03891968ee9b6cb51681c9365509a3f 247 Gene3D G3DSA:2.30.110.60 1 153 2.5E-67 T 13-10-2018 CS348_17500 d03891968ee9b6cb51681c9365509a3f 247 Gene3D G3DSA:2.60.40.1080 158 247 8.5E-16 T 13-10-2018 CS348_17500 d03891968ee9b6cb51681c9365509a3f 247 Pfam PF16461 Lambda phage tail tube protein, TTP 3 154 6.8E-76 T 13-10-2018 IPR032494 Lambda phage tail tube protein CS348_17500 d03891968ee9b6cb51681c9365509a3f 247 SMART SM00635 161 241 2.4E-14 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 CS348_17500 d03891968ee9b6cb51681c9365509a3f 247 Pfam PF02368 Bacterial Ig-like domain (group 2) 162 238 4.0E-9 T 13-10-2018 IPR003343 Bacterial Ig-like, group 2 CS348_21550 ab99cb99fcf9c12cc13a19da466fdb52 114 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 4.3E-25 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like CS348_21550 ab99cb99fcf9c12cc13a19da466fdb52 114 Gene3D G3DSA:3.10.490.10 1 114 1.3E-47 T 13-10-2018 CS348_21550 ab99cb99fcf9c12cc13a19da466fdb52 114 SUPERFAMILY SSF110857 1 111 3.14E-35 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily CS348_14400 4acb9a0573681e7f0bab843b94296011 265 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CS348_14400 4acb9a0573681e7f0bab843b94296011 265 SUPERFAMILY SSF51556 1 259 7.23E-87 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_14400 4acb9a0573681e7f0bab843b94296011 265 Pfam PF01026 TatD related DNase 4 255 3.4E-76 T 13-10-2018 IPR001130 TatD family GO:0016788 CS348_14400 4acb9a0573681e7f0bab843b94296011 265 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 CS348_14400 4acb9a0573681e7f0bab843b94296011 265 Gene3D G3DSA:3.20.20.140 1 265 7.8E-107 T 13-10-2018 CS348_14400 4acb9a0573681e7f0bab843b94296011 265 PIRSF PIRSF005902 1 259 7.4E-75 T 13-10-2018 IPR001130 TatD family GO:0016788 CS348_14400 4acb9a0573681e7f0bab843b94296011 265 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 3.4E-95 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 1.5E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 1.5E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 1.5E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 SMART SM00418 8 89 3.1E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 Gene3D G3DSA:1.10.10.10 1 93 9.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 SUPERFAMILY SSF46785 4 93 1.09E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_09635 1cb04866d37c80b7e0f38bc59b51b6bf 124 Pfam PF12840 Helix-turn-helix domain 8 69 1.0E-15 T 13-10-2018 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 Gene3D G3DSA:3.20.20.70 1 329 1.1E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 5 329 38.078 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 Pfam PF13353 4Fe-4S single cluster domain 23 125 1.2E-5 T 13-10-2018 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 Pfam PF04055 Radical SAM superfamily 19 181 1.2E-27 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 312 1.6E-39 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 SUPERFAMILY SSF102114 5 290 1.12E-69 T 13-10-2018 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 329 1.4E-108 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16320 7ee0b780b91d021103ccd00ef03d7ce9 329 SMART SM00729 14 226 4.8E-5 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_13535 52fe24c86e41c86c1ded32c9c4711553 158 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 129 8.7E-31 T 13-10-2018 IPR009678 Bacteriophage tail completion protein R CS348_11900 d11d67d2d97742c2688ea6ca07cd2f9b 268 ProDom PD011184 BTPA I PHOTOSYSTEM BIOGENESIS ASSEMBLY SGCQ TRIPHOSPHATASE NUCLEOSIDE PAE3553 ENZYME 35 207 4.0E-99 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family CS348_11900 d11d67d2d97742c2688ea6ca07cd2f9b 268 SUPERFAMILY SSF51366 3 264 3.3E-22 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_11900 d11d67d2d97742c2688ea6ca07cd2f9b 268 Pfam PF03437 BtpA family 10 265 2.0E-103 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family CS348_11900 d11d67d2d97742c2688ea6ca07cd2f9b 268 PIRSF PIRSF005956 2 268 3.3E-80 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family CS348_11900 d11d67d2d97742c2688ea6ca07cd2f9b 268 TIGRFAM TIGR00259 thylakoid_BtpA: membrane complex biogenesis protein, BtpA family 11 267 3.6E-116 T 13-10-2018 IPR005137 Membrane complex biogenesis protein, BtpA family CS348_04385 8664940fc7ffbce36c0e081eecad5019 418 Pfam PF03825 Nucleoside H+ symporter 1 406 1.4E-182 T 13-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 CS348_04385 8664940fc7ffbce36c0e081eecad5019 418 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 418 6.0E-217 T 13-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 CS348_04385 8664940fc7ffbce36c0e081eecad5019 418 SUPERFAMILY SSF103473 9 406 7.32E-32 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_04385 8664940fc7ffbce36c0e081eecad5019 418 Gene3D G3DSA:1.20.1250.20 5 192 1.3E-8 T 13-10-2018 CS348_04385 8664940fc7ffbce36c0e081eecad5019 418 Hamap MF_02049 Nucleoside permease NupG [nupG]. 1 417 50.55 T 13-10-2018 IPR033667 Nucleoside permease NupG GO:0005887|GO:1901642 CS348_04385 8664940fc7ffbce36c0e081eecad5019 418 Gene3D G3DSA:1.20.1250.20 199 411 1.7E-27 T 13-10-2018 CS348_01475 b9f0989696016a9c507c3ef453261d7f 138 ProDom PD059127 YHHA MEMBRANE OUTER PRECURSOR SIGNAL STY4259 ORFQ ECS4294 1 138 1.0E-41 T 13-10-2018 IPR020158 Protein of unknown function DUF2756 CS348_01475 b9f0989696016a9c507c3ef453261d7f 138 Pfam PF10956 Protein of unknown function (DUF2756) 1 104 2.2E-52 T 13-10-2018 IPR020158 Protein of unknown function DUF2756 CS348_14590 363acd7530b01c73fd9edc48986f0a5a 97 Pfam PF04316 Anti-sigma-28 factor, FlgM 40 87 1.3E-10 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal CS348_14590 363acd7530b01c73fd9edc48986f0a5a 97 SUPERFAMILY SSF101498 2 88 4.45E-14 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily CS348_14590 363acd7530b01c73fd9edc48986f0a5a 97 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 90 4.4E-19 T 13-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 CS348_15345 8e6c78851542ba2c8fe9ae5d22860e89 230 Gene3D G3DSA:3.30.240.20 95 167 9.9E-19 T 13-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily CS348_15345 8e6c78851542ba2c8fe9ae5d22860e89 230 Pfam PF04239 Protein of unknown function (DUF421) 104 168 1.9E-15 T 13-10-2018 IPR007353 Protein of unknown function DUF421 CS348_18570 376bfe63cd459b115f4550f4a95cd789 336 PIRSF PIRSF000267 1 336 2.0E-91 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_18570 376bfe63cd459b115f4550f4a95cd789 336 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 325 7.5E-101 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_18570 376bfe63cd459b115f4550f4a95cd789 336 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 5 218 1.3E-43 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 SUPERFAMILY SSF117143 73 364 2.88E-87 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 Gene3D G3DSA:2.60.98.20 146 285 2.4E-53 T 13-10-2018 IPR037058 Flagellar hook protein FlgE superfamily CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 Pfam PF07559 Flagellar basal body protein FlaE 173 284 5.2E-21 T 13-10-2018 IPR011491 Flagellar hook protein FlgE CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 325 402 2.4E-20 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 385 1.0E-97 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CS348_14560 c2509961c81d702b5cd57ef5d26741ed 403 Pfam PF00460 Flagella basal body rod protein 4 33 1.1E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 41 310 1.0E-110 T 13-10-2018 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 188 199 - T 13-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 Gene3D G3DSA:2.30.130.90 311 479 4.8E-73 T 13-10-2018 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 Gene3D G3DSA:3.40.50.150 2 310 5.0E-102 T 13-10-2018 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 421 470 1.1E-10 T 13-10-2018 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 SUPERFAMILY SSF53335 7 310 1.74E-66 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 189 201 4.5E-28 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 91 105 4.5E-28 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 122 132 4.5E-28 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 239 255 4.5E-28 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 293 310 4.5E-28 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 6 475 64.029 T 13-10-2018 IPR023545 rRNA small subunit methyltransferase F GO:0008649 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 8 105 1.4E-27 T 13-10-2018 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Reactome: R-HSA-6790901|Reactome: R-HSA-8869496 CS348_10560 0a7108dbe1eb819f49f254dc27dd93c4 479 Pfam PF01189 16S rRNA methyltransferase RsmB/F 117 309 1.2E-44 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 CS348_22590 a367329cce07352b7fa61feedf69a599 80 Pfam PF11106 Exopolysaccharide production protein YjbE 1 79 5.9E-29 T 13-10-2018 IPR025858 Exopolysaccharide production protein YjbE CS348_22590 a367329cce07352b7fa61feedf69a599 80 ProDom PD865006 YJBE PRECURSOR SIGNAL MEMBRANE OUTER EXPORTED 1 28 2.0E-8 T 13-10-2018 CS348_14130 f200370d4891556189c88067577bd7eb 114 SUPERFAMILY SSF141488 30 107 8.11E-12 T 13-10-2018 IPR036328 C-type lysozyme inhibitor superfamily CS348_14130 f200370d4891556189c88067577bd7eb 114 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 34 105 1.1E-10 T 13-10-2018 IPR018660 C-type lysozyme inhibitor CS348_14130 f200370d4891556189c88067577bd7eb 114 Gene3D G3DSA:2.40.128.200 25 114 1.3E-29 T 13-10-2018 IPR036328 C-type lysozyme inhibitor superfamily CS348_18260 f7a2edf602820961a38c948827355ccc 324 Pfam PF00248 Aldo/keto reductase family 15 312 4.0E-74 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_18260 f7a2edf602820961a38c948827355ccc 324 SUPERFAMILY SSF51430 1 321 1.02E-101 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_18260 f7a2edf602820961a38c948827355ccc 324 Gene3D G3DSA:3.20.20.100 1 322 6.0E-119 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_18260 f7a2edf602820961a38c948827355ccc 324 PRINTS PR00069 Aldo-keto reductase signature 111 129 3.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_18260 f7a2edf602820961a38c948827355ccc 324 PRINTS PR00069 Aldo-keto reductase signature 230 254 3.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_18260 f7a2edf602820961a38c948827355ccc 324 PRINTS PR00069 Aldo-keto reductase signature 142 159 3.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_18260 f7a2edf602820961a38c948827355ccc 324 PRINTS PR00069 Aldo-keto reductase signature 47 71 3.0E-5 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_10340 f18b384a55ddcba69b4bcb6f7b2a21e8 96 Gene3D G3DSA:1.10.10.710 21 91 1.1E-9 T 13-10-2018 IPR038627 YebG-like superfamily CS348_10340 f18b384a55ddcba69b4bcb6f7b2a21e8 96 Pfam PF07130 YebG protein 1 74 1.8E-33 T 13-10-2018 IPR009813 Uncharacterised protein family YebG CS348_18640 e4066b53afed986d8d1453a4e40c30e6 213 Gene3D G3DSA:1.10.10.10 130 193 1.1E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_18640 e4066b53afed986d8d1453a4e40c30e6 213 SUPERFAMILY SSF46894 119 195 1.77E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_24175 bb9e860d6fe2e4e50a5261b5678df0b0 234 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 53 234 1.3E-85 T 13-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 CS348_24175 bb9e860d6fe2e4e50a5261b5678df0b0 234 Gene3D G3DSA:3.40.630.30 3 234 3.1E-70 T 13-10-2018 CS348_24175 bb9e860d6fe2e4e50a5261b5678df0b0 234 SUPERFAMILY SSF55729 50 228 1.8E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_24175 bb9e860d6fe2e4e50a5261b5678df0b0 234 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 53 234 42.044 T 13-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 Gene3D G3DSA:3.30.1550.10 2 72 3.6E-35 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 2.8E-65 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 1.2E-29 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-16 T 13-10-2018 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 SUPERFAMILY SSF46906 68 141 9.68E-26 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 3.6E-24 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 SMART SM00649 9 141 3.9E-84 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 SUPERFAMILY SSF54747 3 73 5.49E-30 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.697 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CS348_22860 7ec1a102bd7abebc6dc97d180b230ca9 142 Gene3D G3DSA:1.10.10.250 73 141 4.3E-27 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CS348_00060 5a636bdbb50598e38c52aede1fe45680 346 TIGRFAM TIGR02955 TMAO_TorT: TMAO reductase system periplasmic protein TorT 50 337 2.3E-114 T 13-10-2018 IPR014301 TMAO reductase system, periplasmic protein TorT CS348_00060 5a636bdbb50598e38c52aede1fe45680 346 Gene3D G3DSA:3.40.50.2300 151 334 2.8E-94 T 13-10-2018 CS348_00060 5a636bdbb50598e38c52aede1fe45680 346 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 49 335 3.0E-65 T 13-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain CS348_00060 5a636bdbb50598e38c52aede1fe45680 346 Gene3D G3DSA:3.40.50.2300 51 310 2.8E-94 T 13-10-2018 CS348_00060 5a636bdbb50598e38c52aede1fe45680 346 SUPERFAMILY SSF53822 48 309 4.35E-39 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_06885 0ff971fc7223fc75ea3638c4b2333f16 222 Pfam PF16728 Domain of unknown function (DUF5066) 1 222 2.0E-117 T 13-10-2018 IPR031990 Protein of unknown function DUF5066 CS348_06885 0ff971fc7223fc75ea3638c4b2333f16 222 Gene3D G3DSA:3.40.1580.30 1 222 5.5E-134 T 13-10-2018 CS348_04955 f4456b6cd973470dae35c7e84e87b8fa 346 SUPERFAMILY SSF51430 1 344 2.62E-105 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_04955 f4456b6cd973470dae35c7e84e87b8fa 346 PRINTS PR00069 Aldo-keto reductase signature 116 134 4.2E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_04955 f4456b6cd973470dae35c7e84e87b8fa 346 PRINTS PR00069 Aldo-keto reductase signature 164 181 4.2E-8 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 CS348_04955 f4456b6cd973470dae35c7e84e87b8fa 346 Pfam PF00248 Aldo/keto reductase family 16 337 4.6E-71 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain CS348_04955 f4456b6cd973470dae35c7e84e87b8fa 346 Gene3D G3DSA:3.20.20.100 1 346 7.9E-146 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 SUPERFAMILY SSF54826 8 137 7.07E-30 T 13-10-2018 CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 TIGRFAM TIGR03247 glucar-dehydr: glucarate dehydratase 6 446 1.5E-270 T 13-10-2018 IPR017653 Glucarate dehydratase GO:0000287|GO:0008872|GO:0019394 KEGG: 00053+4.2.1.40|MetaCyc: PWY-6499 CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 Gene3D G3DSA:3.30.390.10 10 414 2.1E-184 T 13-10-2018 IPR029017 Enolase-like, N-terminal CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 Gene3D G3DSA:3.20.20.120 139 400 2.1E-184 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 SMART SM00922 185 285 1.7E-14 T 13-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 Pfam PF13378 Enolase C-terminal domain-like 189 405 1.1E-36 T 13-10-2018 IPR029065 Enolase C-terminal domain-like CS348_05210 be4700dac282d7d485eff999ee7b8f68 446 SUPERFAMILY SSF51604 139 415 2.83E-81 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CS348_24545 52213f11a79727533e6bb4a927eb7d9b 296 SUPERFAMILY SSF161098 35 286 8.9E-34 T 13-10-2018 IPR035906 MetI-like superfamily CS348_24545 52213f11a79727533e6bb4a927eb7d9b 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 1.1E-85 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 CS348_24545 52213f11a79727533e6bb4a927eb7d9b 296 Gene3D G3DSA:1.10.3720.10 74 294 5.4E-29 T 13-10-2018 IPR035906 MetI-like superfamily CS348_24545 52213f11a79727533e6bb4a927eb7d9b 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 1.2E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_00560 fa55e52595f4b78d577017c0177e7b1f 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 34.44 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 CS348_00560 fa55e52595f4b78d577017c0177e7b1f 151 Pfam PF00692 dUTPase 16 149 1.7E-44 T 13-10-2018 IPR029054 dUTPase-like CS348_00560 fa55e52595f4b78d577017c0177e7b1f 151 Gene3D G3DSA:2.70.40.10 1 150 2.9E-53 T 13-10-2018 IPR036157 dUTPase-like superfamily CS348_00560 fa55e52595f4b78d577017c0177e7b1f 151 SUPERFAMILY SSF51283 1 150 5.1E-55 T 13-10-2018 IPR036157 dUTPase-like superfamily CS348_00560 fa55e52595f4b78d577017c0177e7b1f 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 150 3.1E-50 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 CS348_10225 7cd35ee7f653d090dc5527205c2fc464 272 Gene3D G3DSA:3.20.20.410 1 234 4.8E-38 T 13-10-2018 IPR036520 UPF0759 superfamily CS348_10225 7cd35ee7f653d090dc5527205c2fc464 272 SUPERFAMILY SSF117396 1 252 1.22E-62 T 13-10-2018 IPR036520 UPF0759 superfamily CS348_10225 7cd35ee7f653d090dc5527205c2fc464 272 Pfam PF01904 Protein of unknown function DUF72 21 248 2.4E-50 T 13-10-2018 IPR002763 Protein of unknown function DUF72 CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.615 T 13-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 1.8E-163 T 13-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 SUPERFAMILY SSF51161 1 256 1.16E-79 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 8.0E-25 T 13-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 8.7E-13 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0019 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 Gene3D G3DSA:1.10.166.10 1 70 2.8E-34 T 13-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_19250 2ae3c71368c91a3724bc3a7f46381db8 274 Gene3D G3DSA:2.160.10.10 87 257 2.2E-58 T 13-10-2018 CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 ProDom PD004696 SPAN PRESENTATION ANTIGENS SURFACE PROTEINS VIRULENCE ANTIGEN SECRETORY TYPE WITH 1 317 9.0E-166 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 Pfam PF02510 Surface presentation of antigens protein 1 336 1.4E-235 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PIRSF PIRSF020738 1 336 1.5E-194 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 33 50 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 264 275 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 68 79 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 101 114 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 125 139 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 231 243 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 199 210 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 281 294 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 2 12 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 84 94 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 171 182 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 16 26 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 154 166 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_05560 1797aab2ebdf87c2fb198923b9ad1fdd 336 PRINTS PR01306 Salmonella invasion protein InvJ signature 297 309 2.8E-102 T 13-10-2018 IPR003066 Salmonella invasion protein InvJ CS348_21975 01b3fd4b5c6827955a75a3be06e3c5bc 413 PIRSF PIRSF006060 1 410 2.1E-50 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_21975 01b3fd4b5c6827955a75a3be06e3c5bc 413 Pfam PF13520 Amino acid permease 8 365 3.1E-24 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_21975 01b3fd4b5c6827955a75a3be06e3c5bc 413 Gene3D G3DSA:1.20.1740.10 1 412 1.5E-44 T 13-10-2018 CS348_12400 640492989ca0fd8537cb4a31de2c3ddf 119 Pfam PF13811 Domain of unknown function (DUF4186) 7 112 4.4E-51 T 13-10-2018 IPR020378 Protein of unknown function DUF4186 CS348_12400 640492989ca0fd8537cb4a31de2c3ddf 119 ProDom PD076485 YNEG CYTOPLASMIC ECS2130 STY1535 1 114 6.0E-64 T 13-10-2018 IPR020378 Protein of unknown function DUF4186 CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 Pfam PF02769 AIR synthase related protein, C-terminal domain 166 313 6.8E-25 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 Pfam PF00586 AIR synthase related protein, N-terminal domain 53 152 1.9E-15 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 Gene3D G3DSA:3.90.650.10 159 336 8.5E-51 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 Gene3D G3DSA:3.30.1330.10 5 158 8.5E-58 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 PIRSF PIRSF005644 1 336 1.0E-120 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 SUPERFAMILY SSF56042 163 331 1.15E-38 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 SUPERFAMILY SSF55326 3 157 6.8E-33 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CS348_05740 a5fc61e74b6f2e296748073b6da4e0b8 336 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 3 336 2.1E-139 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE CS348_25615 a1531e8701186a7187a8c3afb09002fc 105 Gene3D G3DSA:2.40.128.10 3 104 1.6E-24 T 13-10-2018 CS348_25615 a1531e8701186a7187a8c3afb09002fc 105 SUPERFAMILY SSF50882 4 102 1.39E-18 T 13-10-2018 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 CS348_25615 a1531e8701186a7187a8c3afb09002fc 105 PRINTS PR01274 Metalloprotease inhibitor signature 65 78 1.9E-7 T 13-10-2018 IPR022815 Protease inhibitor I38 CS348_25615 a1531e8701186a7187a8c3afb09002fc 105 PRINTS PR01274 Metalloprotease inhibitor signature 3 19 1.9E-7 T 13-10-2018 IPR022815 Protease inhibitor I38 CS348_25615 a1531e8701186a7187a8c3afb09002fc 105 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 13 92 3.0E-11 T 13-10-2018 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 CS348_25615 a1531e8701186a7187a8c3afb09002fc 105 Pfam PF02974 Protease inhibitor Inh 8 91 2.0E-13 T 13-10-2018 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 CS348_12765 84772ef0aaaea18a3757ea53adc47573 146 Pfam PF10754 Protein of unknown function (DUF2569) 6 144 1.7E-41 T 13-10-2018 IPR019690 Protein of unknown function DUF2569 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 Gene3D G3DSA:2.40.50.140 1 69 3.5E-33 T 13-10-2018 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 13-10-2018 IPR019844 Cold-shock conserved site CS348_17080 2f60b1ca88ad672eb983217787edf563 69 PIRSF PIRSF002599 1 69 3.8E-27 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 SUPERFAMILY SSF50249 3 68 5.14E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_17080 2f60b1ca88ad672eb983217787edf563 69 SMART SM00357 5 69 9.9E-34 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 PRINTS PR00050 Cold shock protein signature 6 21 1.8E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 PRINTS PR00050 Cold shock protein signature 27 36 1.8E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 PRINTS PR00050 Cold shock protein signature 42 60 1.8E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_17080 2f60b1ca88ad672eb983217787edf563 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 7.2E-34 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Pfam PF13981 SopA-like central domain 370 511 5.7E-52 T 13-10-2018 IPR025726 E3 ubiquitin ligase SopA-like central domain MetaCyc: PWY-7511 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Gene3D G3DSA:1.25.40.300 320 514 3.4E-81 T 13-10-2018 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 SUPERFAMILY SSF141571 192 306 1.96E-10 T 13-10-2018 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Gene3D G3DSA:2.160.20.80 158 319 7.8E-85 T 13-10-2018 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Gene3D G3DSA:3.40.1850.10 515 589 3.9E-30 T 13-10-2018 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Pfam PF13599 Pentapeptide repeats (9 copies) 227 297 6.1E-8 T 13-10-2018 IPR001646 Pentapeptide repeat CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Pfam PF13979 SopA-like catalytic domain 622 782 2.7E-83 T 13-10-2018 IPR025725 E3 ubiquitin-protein ligase SopA-like, catalytic domain GO:0004842|GO:0016567 MetaCyc: PWY-7511 CS348_09325 9b7ccc2d9da1498f4e3fd70d792b21b3 782 Gene3D G3DSA:1.10.4140.10 590 782 3.9E-78 T 13-10-2018 IPR038270 SopA-like, catalytic domain superfamily MetaCyc: PWY-7511 CS348_11330 49bf097a539d0d0ac377ee2696707b04 254 SUPERFAMILY SSF48317 16 233 2.75E-31 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CS348_11330 49bf097a539d0d0ac377ee2696707b04 254 Gene3D G3DSA:1.20.144.10 2 254 3.8E-86 T 13-10-2018 CS348_11330 49bf097a539d0d0ac377ee2696707b04 254 SMART SM00014 77 227 1.8E-38 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_11330 49bf097a539d0d0ac377ee2696707b04 254 Pfam PF01569 PAP2 superfamily 81 232 4.8E-33 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CS348_25610 dbae603604c2c56438f361f6819c6c63 467 Gene3D G3DSA:2.150.10.10 249 459 3.0E-186 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25610 dbae603604c2c56438f361f6819c6c63 467 SUPERFAMILY SSF55486 12 242 1.67E-72 T 13-10-2018 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 Pfam PF08548 Peptidase M10 serralysin C terminal 244 467 2.3E-82 T 13-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 SMART SM00235 68 228 2.2E-23 T 13-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 PRINTS PR00313 NodO calcium binding signature 365 374 4.1E-11 T 13-10-2018 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 PRINTS PR00313 NodO calcium binding signature 326 337 4.1E-11 T 13-10-2018 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 PRINTS PR00313 NodO calcium binding signature 356 364 4.1E-11 T 13-10-2018 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 PRINTS PR00313 NodO calcium binding signature 347 355 4.1E-11 T 13-10-2018 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 PIRSF PIRSF001205 1 467 1.3E-212 T 13-10-2018 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 SUPERFAMILY SSF51120 246 462 7.59E-43 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal CS348_25610 dbae603604c2c56438f361f6819c6c63 467 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 352 370 - T 13-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site CS348_25610 dbae603604c2c56438f361f6819c6c63 467 Gene3D G3DSA:3.40.390.10 25 248 3.0E-186 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 CS348_25610 dbae603604c2c56438f361f6819c6c63 467 Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like 150 216 9.2E-6 T 13-10-2018 CS348_15670 c926d71b80bdaed52b6fd4e9895645be 107 Pfam PF05135 Phage gp6-like head-tail connector protein 6 103 1.3E-17 T 13-10-2018 IPR021146 Phage gp6-like head-tail connector protein CS348_15670 c926d71b80bdaed52b6fd4e9895645be 107 Gene3D G3DSA:1.10.3230.30 1 104 6.1E-8 T 13-10-2018 CS348_21460 2b763a22d10a58a13c24338c8ec9cc6f 277 Pfam PF01261 Xylose isomerase-like TIM barrel 23 227 6.1E-23 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_21460 2b763a22d10a58a13c24338c8ec9cc6f 277 SUPERFAMILY SSF51658 1 269 5.8E-53 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_21460 2b763a22d10a58a13c24338c8ec9cc6f 277 Gene3D G3DSA:3.20.20.150 2 277 1.9E-52 T 13-10-2018 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 PIRSF PIRSF000110 1 491 7.2E-180 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 SUPERFAMILY SSF51735 4 189 3.81E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 7.2E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 7.2E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 7.2E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 7.2E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 7.2E-47 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 Gene3D G3DSA:3.40.50.720 12 437 2.7E-166 T 13-10-2018 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 Gene3D G3DSA:3.30.360.10 176 476 2.7E-166 T 13-10-2018 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 1.2E-204 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 186 1.4E-56 T 13-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 488 2.9E-116 T 13-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 90.546 T 13-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 SUPERFAMILY SSF55347 176 488 3.92E-113 T 13-10-2018 CS348_10320 acdd185afb377fe91dc1b279e78c7968 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 176 182 - T 13-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 CS348_25150 a9ffdf2ef27b5922a15237043f32352d 540 Pfam PF00263 Bacterial type II and III secretion system protein 370 539 1.2E-6 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CS348_25150 a9ffdf2ef27b5922a15237043f32352d 540 Pfam PF07655 Secretin N-terminal domain 196 274 1.4E-9 T 13-10-2018 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 CS348_25150 a9ffdf2ef27b5922a15237043f32352d 540 TIGRFAM TIGR02520 pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family 57 538 4.7E-123 T 13-10-2018 IPR013359 Pilus formation type IVB, outer membrane PilN CS348_09270 28e32a23beb22d9e6917e8411a50e306 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 4.4E-79 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CS348_09270 28e32a23beb22d9e6917e8411a50e306 245 Gene3D G3DSA:3.20.20.70 1 245 3.3E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_09270 28e32a23beb22d9e6917e8411a50e306 245 SUPERFAMILY SSF51366 1 244 4.31E-66 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_09270 28e32a23beb22d9e6917e8411a50e306 245 Pfam PF00977 Histidine biosynthesis protein 1 234 4.8E-76 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 CS348_09270 28e32a23beb22d9e6917e8411a50e306 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.436 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CS348_14575 a9a98da74c59eb763770d4e2ac58f9d7 138 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 3.9E-45 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 CS348_14575 a9a98da74c59eb763770d4e2ac58f9d7 138 PIRSF PIRSF002889 1 137 5.4E-42 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 CS348_14575 a9a98da74c59eb763770d4e2ac58f9d7 138 Pfam PF00460 Flagella basal body rod protein 9 39 4.0E-12 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CS348_14575 a9a98da74c59eb763770d4e2ac58f9d7 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CS348_10230 fbd3ecb407151c24f5788685ac117b13 188 Pfam PF00857 Isochorismatase family 9 183 7.0E-39 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CS348_10230 fbd3ecb407151c24f5788685ac117b13 188 Gene3D G3DSA:3.40.50.850 1 188 3.1E-59 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_10230 fbd3ecb407151c24f5788685ac117b13 188 SUPERFAMILY SSF52499 4 188 8.9E-51 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_19075 6a21fead59a02e944aca0408bd6b073b 134 Pfam PF16358 RcsF lipoprotein 28 132 2.0E-51 T 13-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 CS348_19075 6a21fead59a02e944aca0408bd6b073b 134 Gene3D G3DSA:3.30.110.70 30 134 7.4E-44 T 13-10-2018 CS348_19075 6a21fead59a02e944aca0408bd6b073b 134 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 133 35.984 T 13-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 CS348_01485 3c0d64a6f1a8718654f94406dd8f1de1 344 ProSitePatterns PS01322 Phosphotriesterase family signature 1. 18 26 - T 13-10-2018 IPR017947 Aryldialkylphosphatase, zinc-binding site GO:0008270|GO:0009056|GO:0016788 CS348_01485 3c0d64a6f1a8718654f94406dd8f1de1 344 Pfam PF02126 Phosphotriesterase family 14 343 3.8E-46 T 13-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 CS348_01485 3c0d64a6f1a8718654f94406dd8f1de1 344 SUPERFAMILY SSF51556 4 343 1.29E-70 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_01485 3c0d64a6f1a8718654f94406dd8f1de1 344 Gene3D G3DSA:3.20.20.140 1 344 1.6E-103 T 13-10-2018 CS348_10970 0f8864884fb01e1d202a3fd62b8bf8fe 366 Pfam PF01699 Sodium/calcium exchanger protein 223 364 3.2E-8 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CS348_10970 0f8864884fb01e1d202a3fd62b8bf8fe 366 Pfam PF01699 Sodium/calcium exchanger protein 40 190 1.0E-14 T 13-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 CS348_10970 0f8864884fb01e1d202a3fd62b8bf8fe 366 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 3 365 1.1E-121 T 13-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 CS348_18365 0ddb997528f0ea21b14d6fc3a78db970 456 Pfam PF00324 Amino acid permease 15 451 3.8E-108 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_18365 0ddb997528f0ea21b14d6fc3a78db970 456 PIRSF PIRSF006060 1 454 1.2E-77 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_18365 0ddb997528f0ea21b14d6fc3a78db970 456 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_18365 0ddb997528f0ea21b14d6fc3a78db970 456 Gene3D G3DSA:1.20.1740.10 5 455 2.6E-66 T 13-10-2018 CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 Pfam PF00106 short chain dehydrogenase 3 197 6.8E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 SUPERFAMILY SSF51735 2 258 1.53E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 Gene3D G3DSA:3.40.50.720 1 258 5.9E-62 T 13-10-2018 CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 3.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_05860 ce0af093bf10ebc1c14ea0365bc8ea43 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.2E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_06545 337267cb3d841538d8f53b8fd43b7530 226 SMART SM01144 27 218 2.7E-68 T 13-10-2018 IPR005636 DTW CS348_06545 337267cb3d841538d8f53b8fd43b7530 226 Pfam PF03942 DTW domain 30 211 2.9E-42 T 13-10-2018 IPR005636 DTW CS348_11625 22cbf031d816ac0599b8f54f35986903 200 Pfam PF07883 Cupin domain 126 193 1.1E-14 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CS348_11625 22cbf031d816ac0599b8f54f35986903 200 SUPERFAMILY SSF51182 103 195 7.88E-17 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_11625 22cbf031d816ac0599b8f54f35986903 200 SMART SM00530 25 80 3.6E-12 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_11625 22cbf031d816ac0599b8f54f35986903 200 Pfam PF01381 Helix-turn-helix 26 79 3.9E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_11625 22cbf031d816ac0599b8f54f35986903 200 Gene3D G3DSA:2.60.120.10 111 200 1.2E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_11625 22cbf031d816ac0599b8f54f35986903 200 Gene3D G3DSA:1.10.260.40 14 88 1.1E-16 T 13-10-2018 CS348_11625 22cbf031d816ac0599b8f54f35986903 200 SUPERFAMILY SSF47413 18 84 9.85E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_21425 48924594d9e014a0f05892b334e4ffd7 294 SUPERFAMILY SSF51658 11 253 4.01E-40 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_21425 48924594d9e014a0f05892b334e4ffd7 294 Gene3D G3DSA:3.20.20.150 3 256 3.3E-36 T 13-10-2018 CS348_21425 48924594d9e014a0f05892b334e4ffd7 294 Pfam PF01261 Xylose isomerase-like TIM barrel 20 238 2.7E-31 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 119 1.4E-24 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 SUPERFAMILY SSF55347 132 319 9.49E-49 T 13-10-2018 CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 SUPERFAMILY SSF51735 5 158 3.66E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 PIRSF PIRSF000148 4 337 7.7E-96 T 13-10-2018 CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 SMART SM00859 6 121 6.9E-34 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 Gene3D G3DSA:3.30.360.10 130 315 3.3E-103 T 13-10-2018 CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 Gene3D G3DSA:3.40.50.720 7 329 3.3E-103 T 13-10-2018 CS348_07790 27ee0d612db89e18c31d9bd43dc4115e 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 317 5.0E-39 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CS348_10580 27ac8ae87cdd709efa48fd6400af61a8 228 Pfam PF17516 ProQ C-terminal domain 178 228 4.2E-24 T 13-10-2018 IPR035236 RNA chaperone ProQ, C-terminal CS348_10580 27ac8ae87cdd709efa48fd6400af61a8 228 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 227 30.589 T 13-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 CS348_10580 27ac8ae87cdd709efa48fd6400af61a8 228 Gene3D G3DSA:1.10.1710.10 1 122 1.4E-25 T 13-10-2018 IPR036442 ProQ/FinO domain superfamily CS348_10580 27ac8ae87cdd709efa48fd6400af61a8 228 SMART SM00945 5 119 2.7E-60 T 13-10-2018 IPR016103 ProQ/FinO domain CS348_10580 27ac8ae87cdd709efa48fd6400af61a8 228 SUPERFAMILY SSF48657 5 119 5.36E-40 T 13-10-2018 IPR036442 ProQ/FinO domain superfamily CS348_10580 27ac8ae87cdd709efa48fd6400af61a8 228 Pfam PF04352 ProQ/FINO family 8 115 3.4E-42 T 13-10-2018 IPR016103 ProQ/FinO domain CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 4 83 9.7E-16 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 Gene3D G3DSA:1.10.10.10 86 169 1.1E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 1.6E-38 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 SUPERFAMILY SSF53155 9 91 4.71E-5 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 SUPERFAMILY SSF46767 86 169 2.75E-34 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 8.8E-36 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CS348_11650 ad9484226cfbd038a66eea6126d077f0 171 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 21 167 39.092 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 CS348_10375 32a27443089bbe24d083941bfc8179ba 124 Gene3D G3DSA:2.60.40.1220 27 124 3.4E-28 T 13-10-2018 CS348_10375 32a27443089bbe24d083941bfc8179ba 124 Pfam PF04234 CopC domain 27 123 1.5E-25 T 13-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 CS348_10375 32a27443089bbe24d083941bfc8179ba 124 SUPERFAMILY SSF81296 26 124 1.89E-26 T 13-10-2018 IPR014756 Immunoglobulin E-set CS348_25380 8c539b7341e76d6465698f7e5ed9d211 194 Pfam PF05309 TraE protein 1 186 1.2E-41 T 13-10-2018 IPR007973 Pilus assembly TraE GO:0000746 CS348_14190 f382dd42ab73a3fc71d1750b465d7c81 180 Pfam PF09374 Predicted Peptidoglycan domain 94 178 4.4E-22 T 13-10-2018 IPR018537 Peptidoglycan binding domain CS348_14190 f382dd42ab73a3fc71d1750b465d7c81 180 Pfam PF05838 Glycosyl hydrolase 108 8 90 1.1E-24 T 13-10-2018 IPR008565 Protein of unknown function DUF847 CS348_14190 f382dd42ab73a3fc71d1750b465d7c81 180 SUPERFAMILY SSF53955 2 175 2.81E-45 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_14190 f382dd42ab73a3fc71d1750b465d7c81 180 Gene3D G3DSA:1.20.141.10 2 180 1.4E-40 T 13-10-2018 CS348_12865 70bb9770e828976060aab72e1702b53a 173 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 33 172 1.4E-29 T 13-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CS348_12865 70bb9770e828976060aab72e1702b53a 173 SUPERFAMILY SSF49329 24 173 2.23E-45 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CS348_12865 70bb9770e828976060aab72e1702b53a 173 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 161 172 - T 13-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CS348_12865 70bb9770e828976060aab72e1702b53a 173 Gene3D G3DSA:2.60.40.200 20 173 2.8E-56 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 452 471 3.3E-29 T 13-10-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 565 578 3.3E-29 T 13-10-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 324 339 3.3E-29 T 13-10-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 345 363 3.3E-29 T 13-10-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01413 Cytochrome c-type biogenesis protein NrfE signature 379 391 3.3E-29 T 13-10-2018 IPR003570 Cytochrome c-type biogenesis protein NrfE GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 86 112 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 250 270 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 138 155 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 280 300 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 300 316 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 316 335 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 165 187 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 216 242 4.1E-71 T 13-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 428 569 1.1E-37 T 13-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 327 416 6.0E-17 T 13-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal CS348_22275 742858a8aa3d1b73306e45a2912d028d 578 Pfam PF01578 Cytochrome C assembly protein 95 302 4.8E-45 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CS348_11940 b1ee84f32cffe1a67b6974f67c79b1fa 222 Pfam PF11769 Protein of unknown function (DUF3313) 17 213 2.5E-54 T 13-10-2018 IPR021747 Protein of unknown function DUF3313 CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 Gene3D G3DSA:3.40.50.300 322 559 1.1E-67 T 13-10-2018 CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 SUPERFAMILY SSF90123 10 316 1.26E-42 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 Gene3D G3DSA:1.20.1560.10 8 316 3.2E-35 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 SMART SM00382 357 543 1.0E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 SUPERFAMILY SSF52540 322 553 5.22E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 Pfam PF00664 ABC transporter transmembrane region 23 281 2.3E-8 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 Pfam PF00005 ABC transporter 348 495 5.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_25620 c6c41fcdcade7ce8d9e935ac506994d2 577 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 16 554 4.6E-223 T 13-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 CS348_14070 49f003dbed78ba06374ccd3424e0c0c8 196 Gene3D G3DSA:3.40.50.300 1 196 8.1E-41 T 13-10-2018 CS348_14070 49f003dbed78ba06374ccd3424e0c0c8 196 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_14070 49f003dbed78ba06374ccd3424e0c0c8 196 SUPERFAMILY SSF52540 2 193 5.0E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14070 49f003dbed78ba06374ccd3424e0c0c8 196 SMART SM00382 26 196 2.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_14070 49f003dbed78ba06374ccd3424e0c0c8 196 Pfam PF00005 ABC transporter 18 150 3.0E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_09410 41af312af5c697c593006d637b5b74b1 464 SUPERFAMILY SSF53720 35 455 1.19E-61 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CS348_09410 41af312af5c697c593006d637b5b74b1 464 Gene3D G3DSA:3.40.309.10 242 419 5.7E-113 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CS348_09410 41af312af5c697c593006d637b5b74b1 464 PIRSF PIRSF036410 1 464 5.5E-218 T 13-10-2018 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related CS348_09410 41af312af5c697c593006d637b5b74b1 464 Pfam PF00171 Aldehyde dehydrogenase family 36 418 1.2E-29 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CS348_09410 41af312af5c697c593006d637b5b74b1 464 Gene3D G3DSA:3.40.605.10 37 241 5.7E-113 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CS348_00660 89633d12ee61870c5b02944d86e943e6 348 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 343 8.1E-169 T 13-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 CS348_00660 89633d12ee61870c5b02944d86e943e6 348 Gene3D G3DSA:3.40.50.2000 163 347 7.1E-73 T 13-10-2018 CS348_00660 89633d12ee61870c5b02944d86e943e6 348 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 324 1.1E-88 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 CS348_00660 89633d12ee61870c5b02944d86e943e6 348 Gene3D G3DSA:3.40.50.2000 1 151 1.2E-65 T 13-10-2018 CS348_00660 89633d12ee61870c5b02944d86e943e6 348 SUPERFAMILY SSF53756 1 345 4.55E-102 T 13-10-2018 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 Gene3D G3DSA:3.40.50.2300 144 272 1.1E-120 T 13-10-2018 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 329 344 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 88 98 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 254 272 1.0E-66 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 Gene3D G3DSA:3.40.50.2300 27 341 1.1E-120 T 13-10-2018 CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 SUPERFAMILY SSF53822 24 365 1.68E-87 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_01415 e202cac5ba2941ca4b389a7d2de63b11 369 Pfam PF13458 Periplasmic binding protein 26 362 3.5E-57 T 13-10-2018 IPR028081 Leucine-binding protein domain CS348_09005 2a739c3e848af8660cd17c966f40745b 470 SUPERFAMILY SSF103473 8 457 3.27E-61 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_09005 2a739c3e848af8660cd17c966f40745b 470 Gene3D G3DSA:1.20.1250.20 259 461 5.6E-14 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 Pfam PF07690 Major Facilitator Superfamily 15 405 4.5E-45 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 Gene3D G3DSA:1.20.1720.10 12 242 1.3E-44 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 199 217 3.7E-8 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 3.7E-8 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 3.7E-8 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 3.7E-8 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 3.7E-8 T 13-10-2018 CS348_09005 2a739c3e848af8660cd17c966f40745b 470 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 465 49.289 T 13-10-2018 IPR023721 Multidrug resistance protein MdtD, putative CS348_13325 638c12776157c645ec60a211b907112c 97 Gene3D G3DSA:3.30.70.20 6 92 6.4E-8 T 13-10-2018 CS348_13325 638c12776157c645ec60a211b907112c 97 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 65 76 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_13325 638c12776157c645ec60a211b907112c 97 PIRSF PIRSF036548 3 97 1.0E-38 T 13-10-2018 IPR012206 Ferredoxin-like, FixX GO:0005506 CS348_13325 638c12776157c645ec60a211b907112c 97 SUPERFAMILY SSF54862 42 91 1.93E-8 T 13-10-2018 CS348_01410 bc09f88703a76e49ce963a2d73eb29be 127 SUPERFAMILY SSF55729 17 121 2.32E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_01410 bc09f88703a76e49ce963a2d73eb29be 127 Hamap MF_02018 PanD regulatory factor [panZ]. 1 126 32.63 T 13-10-2018 IPR032900 PanD regulatory factor PanZ GO:0015940|GO:0031638 CS348_01410 bc09f88703a76e49ce963a2d73eb29be 127 Pfam PF12568 Acetyltransferase (GNAT) domain 2 125 5.2E-49 T 13-10-2018 IPR000182 GNAT domain CS348_01410 bc09f88703a76e49ce963a2d73eb29be 127 Gene3D G3DSA:3.40.630.30 1 127 2.8E-42 T 13-10-2018 CS348_23735 fbaf99a071a13b72924efd9057db05c7 413 SUPERFAMILY SSF102114 4 401 1.31E-76 T 13-10-2018 CS348_23735 fbaf99a071a13b72924efd9057db05c7 413 Gene3D G3DSA:3.80.30.20 1 312 1.1E-66 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_23735 fbaf99a071a13b72924efd9057db05c7 413 SMART SM00729 39 248 4.5E-22 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_23735 fbaf99a071a13b72924efd9057db05c7 413 Pfam PF04055 Radical SAM superfamily 44 211 5.8E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_23735 fbaf99a071a13b72924efd9057db05c7 413 Pfam PF06969 HemN C-terminal domain 327 390 1.7E-7 T 13-10-2018 IPR010723 HemN, C-terminal CS348_16070 f531f810cf5abe223b28e85b5468b6f0 127 Pfam PF10799 Biofilm formation protein (YliH/bssR) 1 126 3.5E-76 T 13-10-2018 IPR020359 Biofilm regulator BssR CS348_16070 f531f810cf5abe223b28e85b5468b6f0 127 ProDom PD079626 YLIH RECEPTOR STY0893 CYTOPLASMIC 1 124 5.0E-59 T 13-10-2018 IPR020359 Biofilm regulator BssR CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 11 24 - T 13-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 Gene3D G3DSA:1.10.1040.10 171 296 3.6E-43 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 SUPERFAMILY SSF48179 171 294 1.59E-38 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 Gene3D G3DSA:3.40.50.720 2 170 6.3E-44 T 13-10-2018 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 PIRSF PIRSF000103 2 296 1.1E-58 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 165 2.5E-37 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 291 2.7E-36 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CS348_05440 0ca7e7400499dbe5fe6777dc96fadf43 307 SUPERFAMILY SSF51735 8 169 8.87E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_09180 199584d9893fbbb99c403674c3f0d3fe 411 Pfam PF01943 Polysaccharide biosynthesis protein 2 268 2.7E-47 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CS348_19120 80d416cdb4cea01a5e3f02c0fd9d6a94 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 2.8E-21 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CS348_19120 80d416cdb4cea01a5e3f02c0fd9d6a94 129 Gene3D G3DSA:3.10.180.10 9 128 1.2E-31 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_19120 80d416cdb4cea01a5e3f02c0fd9d6a94 129 SUPERFAMILY SSF54593 3 128 1.61E-30 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 Gene3D G3DSA:3.40.50.740 109 195 1.9E-35 T 13-10-2018 CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 SUPERFAMILY SSF53706 36 195 5.23E-56 T 13-10-2018 CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 SMART SM00926 43 104 1.4E-21 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 Gene3D G3DSA:2.20.25.90 38 108 1.1E-16 T 13-10-2018 CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 104 8.8E-20 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_12145 517640d13a08acbb2cfb516a13744c9d 195 Pfam PF00384 Molybdopterin oxidoreductase 107 141 4.9E-6 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_00980 421d04fbeae1553c6fdc0abec9166b2d 161 SUPERFAMILY SSF55729 21 147 1.5E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_00980 421d04fbeae1553c6fdc0abec9166b2d 161 Pfam PF13673 Acetyltransferase (GNAT) domain 56 152 1.1E-8 T 13-10-2018 IPR000182 GNAT domain CS348_00980 421d04fbeae1553c6fdc0abec9166b2d 161 Gene3D G3DSA:3.40.630.30 1 161 5.0E-52 T 13-10-2018 CS348_16350 06f10511b31669ad19976fb7a8956b1b 228 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 1.3E-61 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CS348_16350 06f10511b31669ad19976fb7a8956b1b 228 Pfam PF13500 AAA domain 3 207 6.0E-40 T 13-10-2018 CS348_16350 06f10511b31669ad19976fb7a8956b1b 228 Gene3D G3DSA:3.40.50.300 2 225 2.0E-70 T 13-10-2018 CS348_16350 06f10511b31669ad19976fb7a8956b1b 228 SUPERFAMILY SSF52540 3 208 2.56E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16350 06f10511b31669ad19976fb7a8956b1b 228 PIRSF PIRSF006755 1 227 1.8E-80 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CS348_16350 06f10511b31669ad19976fb7a8956b1b 228 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 210 29.708 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 Pfam PF00593 TonB dependent receptor 234 662 4.9E-62 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 38 - T 13-10-2018 IPR010916 TonB box, conserved site CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 Gene3D G3DSA:2.40.170.20 163 663 1.0E-219 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 Gene3D G3DSA:2.170.130.10 25 157 1.6E-56 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 646 663 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 152 2.6E-33 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_08635 f39a4a8ca8bfacaf0eaecf9f5953ef0e 663 SUPERFAMILY SSF56935 29 663 5.49E-131 T 13-10-2018 CS348_08155 fd957759f50e23a0e8c884c4c9e04624 327 Gene3D G3DSA:3.90.550.10 3 231 4.3E-38 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_08155 fd957759f50e23a0e8c884c4c9e04624 327 SUPERFAMILY SSF53448 8 230 1.64E-36 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_08155 fd957759f50e23a0e8c884c4c9e04624 327 Pfam PF00535 Glycosyl transferase family 2 11 171 4.0E-32 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_08155 fd957759f50e23a0e8c884c4c9e04624 327 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 325 59.686 T 13-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 CS348_04410 ece6b757905dbeb76cce2b585a53d619 239 SUPERFAMILY SSF53335 18 237 5.92E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_04410 ece6b757905dbeb76cce2b585a53d619 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 5.9E-76 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CS348_04410 ece6b757905dbeb76cce2b585a53d619 239 Pfam PF02390 Putative methyltransferase 64 233 3.1E-62 T 13-10-2018 CS348_04410 ece6b757905dbeb76cce2b585a53d619 239 Gene3D G3DSA:3.40.50.150 30 239 5.2E-73 T 13-10-2018 CS348_04410 ece6b757905dbeb76cce2b585a53d619 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 30.709 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CS348_09625 32031c3379a06244dd16774bc848071a 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.3E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_09625 32031c3379a06244dd16774bc848071a 292 Gene3D G3DSA:1.10.10.10 1 91 1.5E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_09625 32031c3379a06244dd16774bc848071a 292 SUPERFAMILY SSF46785 1 85 2.31E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_09625 32031c3379a06244dd16774bc848071a 292 SUPERFAMILY SSF53850 94 289 1.28E-22 T 13-10-2018 CS348_09625 32031c3379a06244dd16774bc848071a 292 Pfam PF03466 LysR substrate binding domain 93 286 4.5E-26 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_09625 32031c3379a06244dd16774bc848071a 292 Gene3D G3DSA:3.40.190.290 92 289 2.3E-24 T 13-10-2018 CS348_09625 32031c3379a06244dd16774bc848071a 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_09625 32031c3379a06244dd16774bc848071a 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_09625 32031c3379a06244dd16774bc848071a 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.2E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Gene3D G3DSA:3.30.70.1450 197 273 7.7E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 SUPERFAMILY SSF116726 205 271 4.32E-9 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Pfam PF06826 Predicted Permease Membrane Region 11 179 1.0E-41 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Pfam PF06826 Predicted Permease Membrane Region 374 546 1.0E-47 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Gene3D G3DSA:3.30.70.1450 288 365 9.1E-11 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 2.0E-49 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 2.5E-38 T 13-10-2018 IPR006512 YidE/YbjL duplication CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Pfam PF02080 TrkA-C domain 291 358 6.1E-10 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Pfam PF02080 TrkA-C domain 212 270 1.1E-6 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 553 57.496 T 13-10-2018 IPR023018 Transport protein YidE, putative CS348_00150 321c7b92d70f34bcc68913ae3a9effa4 553 SUPERFAMILY SSF116726 285 360 6.28E-13 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CS348_07755 9ed26e465cacb084277e6d5c0e0f2ac7 172 Pfam PF12883 Protein of unknown function (DUF3828) 22 141 1.4E-38 T 13-10-2018 IPR024289 Domain of unknown function DUF3828 CS348_07755 9ed26e465cacb084277e6d5c0e0f2ac7 172 Gene3D G3DSA:3.10.450.50 21 143 1.2E-30 T 13-10-2018 CS348_02310 464e15ae82f75a7ec659a29bccbe2062 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 80 1.0E-40 T 13-10-2018 IPR010398 Protein of unknown function DUF997 CS348_02310 464e15ae82f75a7ec659a29bccbe2062 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 1.6E-31 T 13-10-2018 IPR010398 Protein of unknown function DUF997 CS348_24995 c8dc3d831516e75ea9b1c4670872ddbc 716 TIGRFAM TIGR04346 DotA_TraY: conjugal transfer/type IV secretion protein DotA/TraY 42 667 5.0E-128 T 13-10-2018 IPR027628 Conjugal transfer/type IV secretion protein DotA/TraY CS348_07685 be37f4c08ef84b3f27f74ede588d9123 94 Gene3D G3DSA:3.30.70.860 23 94 1.3E-29 T 13-10-2018 IPR035571 UPF0234-like, C-terminal CS348_07685 be37f4c08ef84b3f27f74ede588d9123 94 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 1 94 1.2E-44 T 13-10-2018 IPR005272 Conserved hypothetical protein CHP00743 CS348_07685 be37f4c08ef84b3f27f74ede588d9123 94 Pfam PF04175 Protein of unknown function (DUF406) 3 94 1.1E-37 T 13-10-2018 IPR005272 Conserved hypothetical protein CHP00743 CS348_07115 941b28ea5349f5af2791a2e98e0457ac 422 Pfam PF02447 GntP family permease 9 415 7.4E-26 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_25160 94d64ec96600a9728e503d01553349b1 326 Pfam PF10671 Toxin co-regulated pilus biosynthesis protein Q 240 322 3.9E-18 T 13-10-2018 IPR018927 Toxin co-regulated pilus biosynthesis protein Q, C-terminal CS348_05375 feb08df8afdf5f22029a8f97f1a555fb 103 Pfam PF04977 Septum formation initiator 11 89 3.5E-31 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC CS348_05375 feb08df8afdf5f22029a8f97f1a555fb 103 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 36.308 T 13-10-2018 IPR023081 Cell division protein FtsB CS348_05375 feb08df8afdf5f22029a8f97f1a555fb 103 Gene3D G3DSA:1.20.5.400 20 63 9.5E-15 T 13-10-2018 CS348_16160 785d4ee795462c77dc61175fb5413bec 526 Pfam PF00884 Sulfatase 219 483 9.9E-39 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_16160 785d4ee795462c77dc61175fb5413bec 526 Gene3D G3DSA:3.40.720.10 206 507 7.8E-45 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_16160 785d4ee795462c77dc61175fb5413bec 526 SUPERFAMILY SSF53649 220 485 1.37E-17 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_19490 8558c9c803987308ad36bdc590764901 286 Gene3D G3DSA:3.40.50.150 55 286 3.6E-84 T 13-10-2018 CS348_19490 8558c9c803987308ad36bdc590764901 286 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 13-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 CS348_19490 8558c9c803987308ad36bdc590764901 286 SUPERFAMILY SSF53335 6 283 1.81E-89 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_19490 8558c9c803987308ad36bdc590764901 286 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 2.8E-124 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 CS348_19490 8558c9c803987308ad36bdc590764901 286 Gene3D G3DSA:2.30.140.10 1 54 4.2E-30 T 13-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 CS348_19490 8558c9c803987308ad36bdc590764901 286 Pfam PF17284 Spermidine synthase tetramerisation domain 6 57 2.9E-21 T 13-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 CS348_19490 8558c9c803987308ad36bdc590764901 286 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 38.943 T 13-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 CS348_19490 8558c9c803987308ad36bdc590764901 286 Pfam PF01564 Spermine/spermidine synthase domain 60 239 1.1E-66 T 13-10-2018 CS348_23430 a16a3a060255ee524c466e9ea4b40bbd 499 SUPERFAMILY SSF110849 40 130 7.67E-7 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_22765 9bed51c38eb7f4816aedd210e0425b7c 223 Gene3D G3DSA:3.30.2170.10 1 214 2.4E-86 T 13-10-2018 CS348_22765 9bed51c38eb7f4816aedd210e0425b7c 223 Hamap MF_00801 Endonuclease V [nfi]. 2 216 34.809 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 CS348_22765 9bed51c38eb7f4816aedd210e0425b7c 223 Pfam PF04493 Endonuclease V 12 206 8.4E-73 T 13-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 Gene3D G3DSA:3.40.190.10 40 260 1.4E-72 T 13-10-2018 CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 261 6.1E-70 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 SUPERFAMILY SSF53850 15 264 1.18E-74 T 13-10-2018 CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 Gene3D G3DSA:3.40.190.10 126 225 1.4E-72 T 13-10-2018 CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 SMART SM00062 42 263 5.1E-84 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 SMART SM00079 42 262 1.2E-4 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 CS348_09965 f23fe7fec84f032e83cf9d192954d277 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site CS348_17805 243f59212c010d4fb44df4a8afd152c2 276 Gene3D G3DSA:3.40.190.10 111 219 5.6E-78 T 13-10-2018 CS348_17805 243f59212c010d4fb44df4a8afd152c2 276 Pfam PF03180 NLPA lipoprotein 32 260 5.0E-78 T 13-10-2018 IPR004872 Lipoprotein NlpA family CS348_17805 243f59212c010d4fb44df4a8afd152c2 276 Gene3D G3DSA:3.40.190.10 46 258 5.6E-78 T 13-10-2018 CS348_17805 243f59212c010d4fb44df4a8afd152c2 276 SUPERFAMILY SSF53850 31 260 2.35E-66 T 13-10-2018 CS348_24155 100b4235ab4183c828682c6fbe2b06fb 452 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 448 41.798 T 13-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 CS348_24155 100b4235ab4183c828682c6fbe2b06fb 452 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 443 3.4E-260 T 13-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 CS348_17235 b4a2a7f948c1f431ec7ddbe7627d481c 362 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 348 1.6E-50 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CS348_17235 b4a2a7f948c1f431ec7ddbe7627d481c 362 SUPERFAMILY SSF56796 8 358 2.49E-58 T 13-10-2018 CS348_17235 b4a2a7f948c1f431ec7ddbe7627d481c 362 Gene3D G3DSA:1.20.1090.10 162 361 2.0E-57 T 13-10-2018 CS348_17235 b4a2a7f948c1f431ec7ddbe7627d481c 362 PIRSF PIRSF000112 2 361 1.1E-121 T 13-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 CS348_17235 b4a2a7f948c1f431ec7ddbe7627d481c 362 Gene3D G3DSA:3.40.50.1970 1 160 2.2E-25 T 13-10-2018 CS348_17235 b4a2a7f948c1f431ec7ddbe7627d481c 362 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 152 180 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 CS348_10575 df1ad22941122bcf42d6df7cd46b0ddd 194 Pfam PF13185 GAF domain 59 180 1.5E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_10575 df1ad22941122bcf42d6df7cd46b0ddd 194 SMART SM00065 52 190 1.7E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 CS348_10575 df1ad22941122bcf42d6df7cd46b0ddd 194 SUPERFAMILY SSF55781 30 178 3.05E-39 T 13-10-2018 CS348_10575 df1ad22941122bcf42d6df7cd46b0ddd 194 Gene3D G3DSA:3.30.450.40 30 194 1.2E-69 T 13-10-2018 IPR029016 GAF-like domain superfamily CS348_03085 8dd753d1acdb4726ec1d6471307d5724 127 Pfam PF13721 SecD export protein N-terminal TM region 12 104 1.1E-17 T 13-10-2018 IPR027398 SecD export protein N-terminal TM domain CS348_03085 8dd753d1acdb4726ec1d6471307d5724 127 Gene3D G3DSA:3.30.70.260 30 110 2.9E-36 T 13-10-2018 CS348_03085 8dd753d1acdb4726ec1d6471307d5724 127 Hamap MF_00904 Modulator protein MzrA [mzrA]. 2 116 29.164 T 13-10-2018 IPR026574 Modulator protein MzrA CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 TIGRFAM TIGR02760 TraI_TIGR: conjugative transfer relaxase protein TraI 1 1461 3.0E-298 T 13-10-2018 IPR014129 Conjugative transfer relaxase protein TraI CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 Gene3D G3DSA:3.40.50.300 959 1172 9.8E-27 T 13-10-2018 CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 SUPERFAMILY SSF52540 968 1150 2.22E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 SUPERFAMILY SSF55464 1 301 3.75E-90 T 13-10-2018 CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 13 291 1.7E-92 T 13-10-2018 IPR014059 Conjugative relaxase, N-terminal CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 Pfam PF08751 TrwC relaxase 10 286 8.8E-74 T 13-10-2018 IPR014862 TrwC relaxase CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 SUPERFAMILY SSF52540 1111 1453 4.07E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 Pfam PF13604 AAA domain 993 1184 5.4E-34 T 13-10-2018 CS348_25805 7f422127ccfe034291c40bd2f5fe029f 1798 Pfam PF07057 DNA helicase TraI 1432 1549 1.8E-41 T 13-10-2018 IPR009767 DNA helicase, TraI type GO:0000746|GO:0003677|GO:0003678|GO:0005524|GO:0016818 CS348_10605 4b531c9672f47ef19e74d578842c17b7 79 Pfam PF13996 YobH-like protein 2 71 1.3E-36 T 13-10-2018 IPR025611 YobH-like protein CS348_16795 5dfe1f1e011059cb477df857b5bbf0a0 150 Pfam PF01475 Ferric uptake regulator family 10 130 7.4E-49 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CS348_16795 5dfe1f1e011059cb477df857b5bbf0a0 150 SUPERFAMILY SSF46785 6 134 1.88E-45 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_16795 5dfe1f1e011059cb477df857b5bbf0a0 150 Gene3D G3DSA:1.10.10.10 1 83 6.0E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16795 5dfe1f1e011059cb477df857b5bbf0a0 150 Gene3D G3DSA:3.30.1490.190 85 143 5.7E-24 T 13-10-2018 CS348_20190 faf94bbef35ea676b8dd8d0a2b55975f 253 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 103 240 1.0E-14 T 13-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 CS348_20190 faf94bbef35ea676b8dd8d0a2b55975f 253 SUPERFAMILY SSF111364 31 253 3.92E-14 T 13-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 Pfam PF12833 Helix-turn-helix domain 191 270 4.2E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 Gene3D G3DSA:1.10.10.60 219 274 1.2E-18 T 13-10-2018 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 Gene3D G3DSA:1.10.10.60 167 218 4.2E-14 T 13-10-2018 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 252 7.4E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 252 268 7.4E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 SUPERFAMILY SSF46689 222 272 2.64E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 222 264 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_23035 f6c26b8214c336755376d87e17ddbb8e 278 SMART SM00342 185 268 9.9E-32 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 2.0E-79 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.558 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 Gene3D G3DSA:3.90.226.10 1 222 2.3E-90 T 13-10-2018 CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 SUPERFAMILY SSF52096 15 280 1.42E-79 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 13-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 Gene3D G3DSA:1.10.12.10 223 273 3.5E-31 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal CS348_08110 f03f286462450ef86da78f0c325ef2c7 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 3.5E-151 T 13-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 CS348_03050 7d9bc580c305866e321df0c987be2d0c 121 Pfam PF05656 Protein of unknown function (DUF805) 11 117 1.6E-34 T 13-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 CS348_14975 3a2014ca38c147abcbe100964c4ff26f 283 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 281 1.7E-161 T 13-10-2018 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase GO:0008687 KEGG: 00350+1.13.11.15 CS348_14975 3a2014ca38c147abcbe100964c4ff26f 283 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 279 1.3E-83 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 CS348_14975 3a2014ca38c147abcbe100964c4ff26f 283 SUPERFAMILY SSF53213 12 279 5.1E-51 T 13-10-2018 CS348_14975 3a2014ca38c147abcbe100964c4ff26f 283 Gene3D G3DSA:3.40.830.10 1 282 5.1E-87 T 13-10-2018 CS348_18505 e52be8e7ce40dea698d55f0af2ee0df3 207 SUPERFAMILY SSF51206 23 123 2.23E-11 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CS348_18505 e52be8e7ce40dea698d55f0af2ee0df3 207 Hamap MF_02072 Inhibitor of hydrogen peroxide resistance [iprA]. 1 207 47.144 T 13-10-2018 IPR034719 Inhibitor of hydrogen peroxide resistance CS348_18505 e52be8e7ce40dea698d55f0af2ee0df3 207 Gene3D G3DSA:2.60.120.1460 8 203 1.9E-9 T 13-10-2018 CS348_18505 e52be8e7ce40dea698d55f0af2ee0df3 207 Pfam PF15977 Winged helix-turn-helix DNA binding 138 205 7.2E-29 T 13-10-2018 CS348_01470 604c9aefdbb01d6732d128174a9dc247 246 SUPERFAMILY SSF51695 5 238 1.2E-62 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CS348_01470 604c9aefdbb01d6732d128174a9dc247 246 Gene3D G3DSA:3.20.20.190 8 235 1.4E-85 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CS348_01470 604c9aefdbb01d6732d128174a9dc247 246 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 12 238 3.1E-41 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CS348_19895 976dbdca44e87ae4b49a499de1b12256 125 SUPERFAMILY SSF110069 5 125 3.79E-48 T 13-10-2018 IPR036767 ApaG domain superfamily CS348_19895 976dbdca44e87ae4b49a499de1b12256 125 Pfam PF04379 ApaG domain 18 102 1.0E-32 T 13-10-2018 IPR007474 ApaG domain CS348_19895 976dbdca44e87ae4b49a499de1b12256 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 33.509 T 13-10-2018 IPR023065 Uncharacterised protein family ApaG CS348_19895 976dbdca44e87ae4b49a499de1b12256 125 Gene3D G3DSA:2.60.40.1470 1 125 1.1E-46 T 13-10-2018 IPR036767 ApaG domain superfamily CS348_13945 59a59d2a2e366ff9df1d67da7ff085a0 148 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 3 148 18.572 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame CS348_13945 59a59d2a2e366ff9df1d67da7ff085a0 148 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 1 130 6.0E-42 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame CS348_13945 59a59d2a2e366ff9df1d67da7ff085a0 148 Pfam PF04284 Protein of unknown function (DUF441) 7 145 1.0E-45 T 13-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame CS348_23880 444c5dd4af2b8b2712b4e2c9b3e57f10 483 PIRSF PIRSF006247 1 483 9.7E-187 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 CS348_23880 444c5dd4af2b8b2712b4e2c9b3e57f10 483 Pfam PF02386 Cation transport protein 37 477 1.9E-93 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CS348_23880 444c5dd4af2b8b2712b4e2c9b3e57f10 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 1.7E-130 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 CS348_13875 ce2f63330ee948a040680ed404052be2 218 Pfam PF00857 Isochorismatase family 5 207 1.7E-35 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CS348_13875 ce2f63330ee948a040680ed404052be2 218 SUPERFAMILY SSF52499 3 208 3.27E-52 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_13875 ce2f63330ee948a040680ed404052be2 218 Gene3D G3DSA:3.40.50.850 2 210 4.8E-66 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_04550 32fc8411e0427caa8e059a232128c7a7 459 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 345 9.7E-147 T 13-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 CS348_04550 32fc8411e0427caa8e059a232128c7a7 459 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 372 446 6.5E-11 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_04550 32fc8411e0427caa8e059a232128c7a7 459 Gene3D G3DSA:3.40.50.2300 360 459 1.5E-29 T 13-10-2018 CS348_04550 32fc8411e0427caa8e059a232128c7a7 459 Pfam PF02378 Phosphotransferase system, EIIC 20 277 2.6E-22 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_04550 32fc8411e0427caa8e059a232128c7a7 459 SUPERFAMILY SSF52794 369 455 2.88E-21 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_06575 6852598a04ed18a7f96d305335248326 195 Pfam PF01810 LysE type translocator 15 194 1.2E-13 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_07950 39a4dc4bab403228da39d3825ee915eb 506 Pfam PF03606 C4-dicarboxylate anaerobic carrier 15 500 2.4E-158 T 13-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 CS348_01890 cf811c8a133d2be5b830b4ca03b1f868 183 SUPERFAMILY SSF52218 5 177 2.79E-46 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_01890 cf811c8a133d2be5b830b4ca03b1f868 183 Gene3D G3DSA:3.40.50.360 5 179 1.8E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_01890 cf811c8a133d2be5b830b4ca03b1f868 183 Pfam PF02525 Flavodoxin-like fold 6 173 3.9E-39 T 13-10-2018 IPR003680 Flavodoxin-like fold CS348_01890 cf811c8a133d2be5b830b4ca03b1f868 183 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 1 182 47.815 T 13-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CS348_07290 904dc4a35c105121ff6b5f0528c23ad7 453 Gene3D G3DSA:1.10.220.70 55 141 1.2E-41 T 13-10-2018 CS348_07290 904dc4a35c105121ff6b5f0528c23ad7 453 PIRSF PIRSF018788 1 453 3.0E-233 T 13-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 CS348_07290 904dc4a35c105121ff6b5f0528c23ad7 453 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 12 444 3.0E-202 T 13-10-2018 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 CS348_07290 904dc4a35c105121ff6b5f0528c23ad7 453 Gene3D G3DSA:2.30.170.30 1 54 2.2E-29 T 13-10-2018 CS348_07290 904dc4a35c105121ff6b5f0528c23ad7 453 Gene3D G3DSA:3.20.20.70 142 453 1.6E-154 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_11760 7c7ee9ed551f1a91fdb6eefc3b9123b1 201 Pfam PF02525 Flavodoxin-like fold 3 195 5.5E-46 T 13-10-2018 IPR003680 Flavodoxin-like fold CS348_11760 7c7ee9ed551f1a91fdb6eefc3b9123b1 201 Gene3D G3DSA:3.40.50.360 2 201 2.6E-65 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_11760 7c7ee9ed551f1a91fdb6eefc3b9123b1 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.682 T 13-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 CS348_11760 7c7ee9ed551f1a91fdb6eefc3b9123b1 201 SUPERFAMILY SSF52218 1 199 9.05E-59 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_02325 4e8740a21cfb033c362e748602d11d76 199 Pfam PF01794 Ferric reductase like transmembrane component 51 161 4.2E-15 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain CS348_02325 4e8740a21cfb033c362e748602d11d76 199 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 3 197 22.33 T 13-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 CS348_12580 17e35086599b71db51bbcbf63773d88e 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 210 2.0E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_12580 17e35086599b71db51bbcbf63773d88e 215 Gene3D G3DSA:1.10.3720.10 11 209 2.0E-34 T 13-10-2018 IPR035906 MetI-like superfamily CS348_12580 17e35086599b71db51bbcbf63773d88e 215 SUPERFAMILY SSF161098 12 204 2.09E-40 T 13-10-2018 IPR035906 MetI-like superfamily CS348_23190 889845d91fe4007c050088485aa7a169 109 SUPERFAMILY SSF54909 14 104 6.6E-25 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_23190 889845d91fe4007c050088485aa7a169 109 Gene3D G3DSA:3.30.70.100 12 109 1.9E-39 T 13-10-2018 CS348_23190 889845d91fe4007c050088485aa7a169 109 Hamap MF_02051 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [lsrG]. 14 109 38.497 T 13-10-2018 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase GO:0016853 CS348_23190 889845d91fe4007c050088485aa7a169 109 Pfam PF03992 Antibiotic biosynthesis monooxygenase 14 89 7.3E-17 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CS348_00765 8e5e928e885d833f94442884b73cbbde 69 SUPERFAMILY SSF46575 15 60 1.96E-6 T 13-10-2018 CS348_11105 1512a060ed565e6fdbc0bf4764c14f91 215 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 3.4E-83 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CS348_11105 1512a060ed565e6fdbc0bf4764c14f91 215 Pfam PF01914 MarC family integral membrane protein 9 210 6.6E-75 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CS348_11075 7ef560bb491803e15aba9bb13412c41a 301 Gene3D G3DSA:3.40.1090.10 95 211 2.6E-17 T 13-10-2018 CS348_11075 7ef560bb491803e15aba9bb13412c41a 301 Gene3D G3DSA:3.40.1090.10 1 94 1.8E-21 T 13-10-2018 CS348_11075 7ef560bb491803e15aba9bb13412c41a 301 SUPERFAMILY SSF52151 1 296 5.06E-59 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CS348_11075 7ef560bb491803e15aba9bb13412c41a 301 Pfam PF01734 Patatin-like phospholipase 8 165 5.1E-23 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CS348_11075 7ef560bb491803e15aba9bb13412c41a 301 ProSitePatterns PS01237 Uncharacterized protein family UPF0028 signature. 11 43 - T 13-10-2018 IPR001423 Lysophospholipase patatin, conserved site GO:0004622|GO:0046470 Reactome: R-HSA-6814848 CS348_07900 c161f06d8fa03c7dd81671d1baca0e21 214 SUPERFAMILY SSF52833 14 88 7.18E-16 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_07900 c161f06d8fa03c7dd81671d1baca0e21 214 Gene3D G3DSA:3.40.30.10 8 206 4.5E-89 T 13-10-2018 CS348_07900 c161f06d8fa03c7dd81671d1baca0e21 214 Gene3D G3DSA:1.20.1050.10 90 198 4.5E-89 T 13-10-2018 CS348_07900 c161f06d8fa03c7dd81671d1baca0e21 214 Pfam PF14834 Glutathione S-transferase, C-terminal domain 95 211 5.3E-64 T 13-10-2018 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|KEGG: 00983+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 CS348_07900 c161f06d8fa03c7dd81671d1baca0e21 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 86 1.7E-11 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_07900 c161f06d8fa03c7dd81671d1baca0e21 214 SUPERFAMILY SSF47616 91 208 1.33E-10 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 17 33 6.3E-23 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 62 74 6.3E-23 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 44 60 6.3E-23 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 6.3E-23 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 84 4.4E-33 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 13-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 Pfam PF01455 HupF/HypC family 1 71 6.3E-26 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 Gene3D G3DSA:2.40.50.970 1 59 3.8E-28 T 13-10-2018 IPR037254 HupF/HypC superfamily CS348_05750 5e5f3e58d09b4429e4dbf8005eeb12e6 90 SUPERFAMILY SSF159127 1 86 3.01E-28 T 13-10-2018 IPR037254 HupF/HypC superfamily CS348_17020 a564e4067b66f0e92c6326e8d7d037c1 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 27.162 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CS348_17020 a564e4067b66f0e92c6326e8d7d037c1 155 SUPERFAMILY SSF75217 2 153 1.94E-50 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_17020 a564e4067b66f0e92c6326e8d7d037c1 155 PIRSF PIRSF004505 1 154 2.5E-40 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CS348_17020 a564e4067b66f0e92c6326e8d7d037c1 155 Gene3D G3DSA:3.40.1280.10 1 155 1.1E-53 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_17020 a564e4067b66f0e92c6326e8d7d037c1 155 Pfam PF02590 Predicted SPOUT methyltransferase 2 153 1.3E-46 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CS348_17020 a564e4067b66f0e92c6326e8d7d037c1 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 155 1.3E-87 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CS348_13605 176a7c8e6ce971dbcdba111738000c4c 395 Pfam PF17482 Phage tail sheath C-terminal domain 281 380 3.3E-8 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CS348_13605 176a7c8e6ce971dbcdba111738000c4c 395 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 128 279 4.0E-24 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain CS348_13525 5b465ba5e81828c496d7bc3e7bee3a55 147 SUPERFAMILY SSF53955 1 145 9.21E-43 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_13525 5b465ba5e81828c496d7bc3e7bee3a55 147 Pfam PF00959 Phage lysozyme 28 137 7.3E-24 T 13-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 CS348_13525 5b465ba5e81828c496d7bc3e7bee3a55 147 Gene3D G3DSA:1.10.530.40 1 144 1.3E-49 T 13-10-2018 CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 SUPERFAMILY SSF88697 2 68 1.71E-17 T 13-10-2018 IPR015947 PUA-like superfamily CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 Gene3D G3DSA:2.40.240.20 1 73 3.3E-23 T 13-10-2018 CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 Pfam PF04452 RNA methyltransferase 19 236 1.6E-72 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 SUPERFAMILY SSF75217 75 242 2.88E-51 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 1.0E-93 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 Gene3D G3DSA:3.40.1280.10 74 243 1.4E-65 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_04485 0007271a688742c95cdbd1ed1d38c779 243 PIRSF PIRSF015601 2 242 4.9E-52 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CS348_24765 ad319a9ae62f7c3a926faee554cf80ce 84 Pfam PF06440 DNA polymerase III, theta subunit 4 70 2.2E-29 T 13-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_24765 ad319a9ae62f7c3a926faee554cf80ce 84 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 5 73 6.0E-20 T 13-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_24765 ad319a9ae62f7c3a926faee554cf80ce 84 SUPERFAMILY SSF46575 1 80 1.44E-31 T 13-10-2018 CS348_24765 ad319a9ae62f7c3a926faee554cf80ce 84 Gene3D G3DSA:1.20.58.250 1 84 1.9E-33 T 13-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CS348_00860 2e8ada63afadb14c21abc0b21671f53e 310 Pfam PF16154 Domain of unknown function (DUF4862) 8 296 9.7E-95 T 13-10-2018 IPR032344 Protein of unknown function DUF4862 CS348_00860 2e8ada63afadb14c21abc0b21671f53e 310 SUPERFAMILY SSF51658 8 267 9.94E-13 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 220 232 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 172 187 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 45 64 1.8E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 172 192 1.8E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 64 84 1.8E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 217 242 1.8E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 193 214 1.8E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 84 103 1.8E-68 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 103 115 7.0E-34 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 143 155 7.0E-34 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 165 177 7.0E-34 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 115 129 7.0E-34 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 43 52 7.0E-34 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 233 243 7.0E-34 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 47 243 8.5E-95 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 CS348_09845 79f34e4b8ab1df8175b9a06dc87ad518 245 Pfam PF00813 FliP family 48 239 2.5E-79 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 CS348_24695 1e40ce1804254a300fdd0f0b6f2e319e 325 Pfam PF02195 ParB-like nuclease domain 63 138 1.7E-5 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_24695 1e40ce1804254a300fdd0f0b6f2e319e 325 Gene3D G3DSA:1.10.10.2830 144 262 5.2E-38 T 13-10-2018 CS348_24695 1e40ce1804254a300fdd0f0b6f2e319e 325 Pfam PF08775 ParB family 195 320 1.8E-44 T 13-10-2018 IPR014884 ParB protein family, C-terminal CS348_24695 1e40ce1804254a300fdd0f0b6f2e319e 325 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 50 219 1.9E-29 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CS348_24695 1e40ce1804254a300fdd0f0b6f2e319e 325 SMART SM00470 52 139 4.0E-9 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_24695 1e40ce1804254a300fdd0f0b6f2e319e 325 SUPERFAMILY SSF109709 144 222 2.88E-5 T 13-10-2018 CS348_20585 5ca3cdeb0a8d061ecd5b7e6f28eab6b0 173 Pfam PF04985 Phage tail tube protein FII 7 172 3.8E-55 T 13-10-2018 IPR006498 Tail tube protein CS348_20585 5ca3cdeb0a8d061ecd5b7e6f28eab6b0 173 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 4 173 6.6E-77 T 13-10-2018 IPR006498 Tail tube protein CS348_07160 5d94d8ec736613a8958ffac95db94b49 66 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 63 27.781 T 13-10-2018 IPR020910 Uncharacterised protein family UPF0370 CS348_07160 5d94d8ec736613a8958ffac95db94b49 66 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 62 7.9E-35 T 13-10-2018 IPR020910 Uncharacterised protein family UPF0370 CS348_23340 21847d9da87c72804f3e6e8c76fb7227 176 Pfam PF09684 Phage tail protein (Tail_P2_I) 7 143 2.7E-50 T 13-10-2018 IPR006521 Tail protein I CS348_23340 21847d9da87c72804f3e6e8c76fb7227 176 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 7 143 2.0E-62 T 13-10-2018 IPR006521 Tail protein I CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 Gene3D G3DSA:3.60.15.10 1 305 6.1E-108 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 Pfam PF12706 Beta-lactamase superfamily domain 203 271 5.0E-8 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 Pfam PF12706 Beta-lactamase superfamily domain 36 151 7.0E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 SUPERFAMILY SSF56281 1 304 6.09E-85 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 TIGRFAM TIGR02651 RNase_Z: ribonuclease Z 2 303 3.9E-100 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 Hamap MF_01818 Ribonuclease BN [rbn]. 1 305 38.893 T 13-10-2018 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 CS348_08080 63749d9f60ee75ef3a7b4833eec90da4 305 TIGRFAM TIGR02649 true_RNase_BN: ribonuclease BN 2 305 2.2E-206 T 13-10-2018 IPR013469 Ribonuclease BN GO:0016891|GO:0042779 CS348_09220 4ce1bd04c1aa3f8444557cc0000c742e 148 Pfam PF00293 NUDIX domain 18 109 4.5E-11 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_09220 4ce1bd04c1aa3f8444557cc0000c742e 148 SUPERFAMILY SSF55811 18 131 1.12E-19 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_09220 4ce1bd04c1aa3f8444557cc0000c742e 148 Gene3D G3DSA:3.90.79.10 1 148 1.8E-31 T 13-10-2018 CS348_09220 4ce1bd04c1aa3f8444557cc0000c742e 148 PIRSF PIRSF037599 1 148 3.3E-61 T 13-10-2018 IPR033715 GDP-mannose mannosyl hydrolase GO:0008727 CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 3.9E-22 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 SUPERFAMILY SSF55658 1 57 3.14E-19 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 Gene3D G3DSA:3.40.5.10 1 50 1.1E-24 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 2.2E-58 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 5.3E-25 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 SUPERFAMILY SSF55653 60 149 3.92E-25 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 Gene3D G3DSA:3.10.430.100 61 149 3.2E-32 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CS348_21645 7a3a51bf083b31b0d1f3f1832ebaf371 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.457 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_15590 65a7f206c1e4a20e74824140953688b6 175 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 33 169 1.1E-34 T 13-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly CS348_09055 3a1cfcaa11499e2bbcefc324c54eaf76 618 Pfam PF05170 AsmA family 196 512 6.8E-22 T 13-10-2018 IPR007844 AsmA CS348_09055 3a1cfcaa11499e2bbcefc324c54eaf76 618 Pfam PF05170 AsmA family 3 188 4.2E-15 T 13-10-2018 IPR007844 AsmA CS348_17285 6aa78af2b06c743252aa89ea08dd80e2 335 SUPERFAMILY SSF81345 7 328 1.22E-75 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_17285 6aa78af2b06c743252aa89ea08dd80e2 335 Gene3D G3DSA:1.10.3470.10 7 334 8.6E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_17285 6aa78af2b06c743252aa89ea08dd80e2 335 Pfam PF01032 FecCD transport family 19 328 3.6E-90 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_00725 7a8311be5c0a7c1eac6ba52b35b3b544 157 Pfam PF00588 SpoU rRNA Methylase family 2 142 4.6E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CS348_00725 7a8311be5c0a7c1eac6ba52b35b3b544 157 Gene3D G3DSA:3.40.1280.10 1 157 3.3E-73 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CS348_00725 7a8311be5c0a7c1eac6ba52b35b3b544 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.09 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CS348_00725 7a8311be5c0a7c1eac6ba52b35b3b544 157 SUPERFAMILY SSF75217 1 152 1.24E-44 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CS348_00725 7a8311be5c0a7c1eac6ba52b35b3b544 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 153 5.1E-74 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CS348_00725 7a8311be5c0a7c1eac6ba52b35b3b544 157 PIRSF PIRSF029256 1 154 1.8E-70 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CS348_19465 7a5a4c0daa9645d2c96ddf0ca6e53cb6 220 Pfam PF00484 Carbonic anhydrase 38 187 1.3E-50 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CS348_19465 7a5a4c0daa9645d2c96ddf0ca6e53cb6 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CS348_19465 7a5a4c0daa9645d2c96ddf0ca6e53cb6 220 Gene3D G3DSA:3.40.1050.10 1 220 7.9E-95 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 CS348_19465 7a5a4c0daa9645d2c96ddf0ca6e53cb6 220 SUPERFAMILY SSF53056 2 209 1.19E-73 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 CS348_19465 7a5a4c0daa9645d2c96ddf0ca6e53cb6 220 SMART SM00947 30 192 1.2E-68 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CS348_19465 7a5a4c0daa9645d2c96ddf0ca6e53cb6 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CS348_08010 fabef2970b2f32c92dd920e2836c2f0e 147 Gene3D G3DSA:1.20.58.1610 1 126 5.6E-44 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08010 fabef2970b2f32c92dd920e2836c2f0e 147 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 9 126 19.843 T 13-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 CS348_08010 fabef2970b2f32c92dd920e2836c2f0e 147 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 28 125 1.3E-30 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 ProSitePatterns PS01229 Hypothetical cof family signature 2. 189 211 - T 13-10-2018 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 Pfam PF08282 haloacid dehalogenase-like hydrolase 111 235 5.4E-30 T 13-10-2018 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 95 7.3E-24 T 13-10-2018 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 13-10-2018 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 Gene3D G3DSA:3.30.1240.10 84 93 6.6E-24 T 13-10-2018 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 Gene3D G3DSA:3.40.50.1000 165 231 5.1E-26 T 13-10-2018 IPR023214 HAD superfamily CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 SUPERFAMILY SSF56784 1 238 3.05E-58 T 13-10-2018 IPR036412 HAD-like superfamily CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 Gene3D G3DSA:3.40.50.1000 4 83 6.6E-24 T 13-10-2018 IPR023214 HAD superfamily CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 Gene3D G3DSA:3.30.1240.10 114 164 5.1E-26 T 13-10-2018 CS348_23745 a1ca2ff83416501e14ba9a108e711985 244 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 208 1.2E-25 T 13-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 CS348_21635 d09df952ffb54d555a71754eb064b655 211 Pfam PF04225 Opacity-associated protein A LysM-like domain 126 210 1.2E-34 T 13-10-2018 IPR007340 Opacity-associated protein A CS348_21635 d09df952ffb54d555a71754eb064b655 211 Gene3D G3DSA:3.10.450.350 118 209 1.8E-12 T 13-10-2018 CS348_21635 d09df952ffb54d555a71754eb064b655 211 Pfam PF08525 Opacity-associated protein A N-terminal motif 23 49 4.8E-8 T 13-10-2018 IPR013731 Opacity-associated protein A, N-terminal CS348_07335 a3fa6cd7346dbdb2728f5e0b5095a9a4 191 Gene3D G3DSA:2.60.460.10 26 191 3.7E-73 T 13-10-2018 IPR038714 YfeY-like superfamily CS348_07335 a3fa6cd7346dbdb2728f5e0b5095a9a4 191 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 17 191 2.0E-99 T 13-10-2018 IPR010938 Protein of unknown function DUF1131 CS348_07335 a3fa6cd7346dbdb2728f5e0b5095a9a4 191 Pfam PF06572 Protein of unknown function (DUF1131) 24 191 1.6E-79 T 13-10-2018 IPR010938 Protein of unknown function DUF1131 CS348_05075 a78144053309edd85d40cfed02ee2a25 147 Pfam PF02657 Fe-S metabolism associated domain 25 140 2.8E-36 T 13-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like CS348_05075 a78144053309edd85d40cfed02ee2a25 147 Gene3D G3DSA:3.90.1010.10 1 146 5.8E-49 T 13-10-2018 CS348_05075 a78144053309edd85d40cfed02ee2a25 147 SUPERFAMILY SSF82649 3 143 3.35E-41 T 13-10-2018 CS348_05075 a78144053309edd85d40cfed02ee2a25 147 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 7 142 3.9E-68 T 13-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 Gene3D G3DSA:3.40.640.10 37 289 2.7E-188 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 PIRSF PIRSF000412 1 417 3.7E-175 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 SUPERFAMILY SSF53383 6 416 3.99E-185 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 Gene3D G3DSA:3.90.1150.10 10 395 2.7E-188 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 53.706 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CS348_06775 a9c5c19d0c8b5d28bc2e30989d07d392 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 2.3E-189 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CS348_10380 82046553a2c9437c26778e4138c2cb6c 291 Pfam PF05425 Copper resistance protein D 187 284 6.9E-26 T 13-10-2018 IPR008457 Copper resistance protein D GO:0016021 CS348_14255 fb5d9769514078802077720270a9ae29 487 SMART SM00387 375 481 2.4E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_14255 fb5d9769514078802077720270a9ae29 487 Pfam PF08918 PhoQ Sensor 10 188 2.3E-86 T 13-10-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 CS348_14255 fb5d9769514078802077720270a9ae29 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 474 2.5E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_14255 fb5d9769514078802077720270a9ae29 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 1.0E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_14255 fb5d9769514078802077720270a9ae29 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 1.0E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_14255 fb5d9769514078802077720270a9ae29 487 Gene3D G3DSA:3.30.565.10 332 487 1.5E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_14255 fb5d9769514078802077720270a9ae29 487 SUPERFAMILY SSF47384 250 318 7.85E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CS348_14255 fb5d9769514078802077720270a9ae29 487 Gene3D G3DSA:1.10.287.130 214 323 1.1E-7 T 13-10-2018 CS348_14255 fb5d9769514078802077720270a9ae29 487 SUPERFAMILY SSF55874 337 477 6.42E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_14255 fb5d9769514078802077720270a9ae29 487 Gene3D G3DSA:3.30.450.140 44 195 5.0E-80 T 13-10-2018 IPR038429 PhoQ Sensor superfamily CS348_00285 3fc483538e896d309f37eb96c64f4aee 452 Pfam PF03611 PTS system sugar-specific permease component 15 397 1.1E-80 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CS348_00285 3fc483538e896d309f37eb96c64f4aee 452 PIRSF PIRSF006304 8 450 6.0E-153 T 13-10-2018 IPR013853 Galactitol permease IIC component GO:0015577|GO:0015796 CS348_15710 4515635bd082725b93486d28dc61c920 95 Gene3D G3DSA:3.30.2420.10 9 94 2.8E-24 T 13-10-2018 CS348_15710 4515635bd082725b93486d28dc61c920 95 SUPERFAMILY SSF74653 12 75 5.36E-17 T 13-10-2018 CS348_15710 4515635bd082725b93486d28dc61c920 95 PRINTS PR01374 Gram-negative bacterial tonB protein signature 35 53 3.6E-13 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_15710 4515635bd082725b93486d28dc61c920 95 PRINTS PR01374 Gram-negative bacterial tonB protein signature 14 35 3.6E-13 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_15710 4515635bd082725b93486d28dc61c920 95 PRINTS PR01374 Gram-negative bacterial tonB protein signature 54 71 3.6E-13 T 13-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 CS348_15710 4515635bd082725b93486d28dc61c920 95 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 19 78 1.1E-12 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 CS348_15710 4515635bd082725b93486d28dc61c920 95 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 20 90 3.8E-14 T 13-10-2018 IPR006260 TonB/TolA, C-terminal CS348_06785 6e677094b75cdebf4afd330c546b6308 425 Pfam PF00874 PRD domain 132 216 1.2E-8 T 13-10-2018 IPR011608 PRD domain GO:0006355 CS348_06785 6e677094b75cdebf4afd330c546b6308 425 Pfam PF00874 PRD domain 241 328 1.5E-11 T 13-10-2018 IPR011608 PRD domain GO:0006355 CS348_06785 6e677094b75cdebf4afd330c546b6308 425 Gene3D G3DSA:1.10.1790.10 236 331 4.9E-9 T 13-10-2018 CS348_06785 6e677094b75cdebf4afd330c546b6308 425 SUPERFAMILY SSF63520 238 333 7.19E-15 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 SUPERFAMILY SSF103473 8 460 2.09E-69 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 Pfam PF00083 Sugar (and other) transporter 15 461 4.5E-96 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 ProSitePatterns PS00216 Sugar transport proteins signature 1. 69 86 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 Gene3D G3DSA:1.20.1250.20 4 224 1.3E-56 T 13-10-2018 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 PRINTS PR00171 Sugar transporter signature 106 125 1.3E-16 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 PRINTS PR00171 Sugar transporter signature 23 33 1.3E-16 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 PRINTS PR00171 Sugar transporter signature 274 284 1.3E-16 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 PRINTS PR00171 Sugar transporter signature 357 378 1.3E-16 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 PRINTS PR00171 Sugar transporter signature 380 392 1.3E-16 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 Gene3D G3DSA:1.20.1250.20 244 471 4.2E-56 T 13-10-2018 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 ProSitePatterns PS00217 Sugar transport proteins signature 2. 111 136 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 CS348_21500 60a5ab11474b46d2bcde9df120c3454a 478 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 5 458 2.7E-94 T 13-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 6 331 4.1E-69 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 Gene3D G3DSA:1.10.240.10 192 299 3.0E-100 T 13-10-2018 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 SUPERFAMILY SSF52374 6 331 1.51E-75 T 13-10-2018 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 Gene3D G3DSA:3.40.50.620 7 326 3.0E-100 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 13 22 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 146 167 1.2E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 17 33 1.2E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 198 208 1.2E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 68 87 1.2E-20 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CS348_21075 a31352e82dc00d82fe2f731321cadcc4 337 Pfam PF00579 tRNA synthetases class I (W and Y) 6 285 2.5E-48 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CS348_22415 d419d37d3f210e10e8e1acefc9a01b73 176 Gene3D G3DSA:2.40.50.140 2 165 5.1E-52 T 13-10-2018 CS348_22415 d419d37d3f210e10e8e1acefc9a01b73 176 Pfam PF00436 Single-strand binding protein family 6 107 1.9E-42 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CS348_22415 d419d37d3f210e10e8e1acefc9a01b73 176 PIRSF PIRSF002070 2 166 2.6E-40 T 13-10-2018 CS348_22415 d419d37d3f210e10e8e1acefc9a01b73 176 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 176 3.6E-64 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_22415 d419d37d3f210e10e8e1acefc9a01b73 176 SUPERFAMILY SSF50249 4 176 3.02E-62 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CS348_22415 d419d37d3f210e10e8e1acefc9a01b73 176 Hamap MF_00984 Single-stranded DNA-binding protein. 6 118 39.855 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 446 2.2E-143 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Pfam PF01225 Mur ligase family, catalytic domain 27 91 9.3E-10 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 447 34.38 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Gene3D G3DSA:3.40.1190.10 81 311 9.5E-90 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 313 392 2.5E-14 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Gene3D G3DSA:3.40.1390.10 1 80 1.5E-30 T 13-10-2018 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 SUPERFAMILY SSF53244 313 446 1.01E-37 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 SUPERFAMILY SSF53623 100 310 2.75E-58 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Pfam PF08245 Mur ligase middle domain 106 292 9.4E-50 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 Gene3D G3DSA:3.90.190.20 312 452 2.5E-49 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CS348_19715 e948f4021e9748f0148b95536fa4a038 452 SUPERFAMILY SSF63418 1 95 6.02E-28 T 13-10-2018 IPR035911 MurE/MurF, N-terminal CS348_24690 c8bad38c52de1f367883b2a6db9a579b 401 Gene3D G3DSA:1.10.1660.30 37 106 1.3E-33 T 13-10-2018 CS348_24690 c8bad38c52de1f367883b2a6db9a579b 401 Pfam PF13614 AAA domain 110 278 1.4E-19 T 13-10-2018 IPR025669 AAA domain CS348_24690 c8bad38c52de1f367883b2a6db9a579b 401 Gene3D G3DSA:3.40.50.300 108 398 1.6E-67 T 13-10-2018 CS348_24690 c8bad38c52de1f367883b2a6db9a579b 401 SUPERFAMILY SSF52540 108 395 1.15E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02365 cb1fc03d1fe902a4db3e2931830e1361 163 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 10 155 1.1E-42 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CS348_02365 cb1fc03d1fe902a4db3e2931830e1361 163 Pfam PF04093 rod shape-determining protein MreD 6 156 2.5E-45 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CS348_02365 cb1fc03d1fe902a4db3e2931830e1361 163 PIRSF PIRSF018472 1 163 6.7E-58 T 13-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type CS348_00465 10f4d0f3a75b02d8f350c626ef755f87 460 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 11 444 1.9E-149 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_00465 10f4d0f3a75b02d8f350c626ef755f87 460 Gene3D G3DSA:1.20.1250.20 16 416 4.6E-18 T 13-10-2018 CS348_00465 10f4d0f3a75b02d8f350c626ef755f87 460 SUPERFAMILY SSF103473 13 420 7.06E-28 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_00465 10f4d0f3a75b02d8f350c626ef755f87 460 Pfam PF13347 MFS/sugar transport protein 13 427 2.6E-100 T 13-10-2018 CS348_00465 10f4d0f3a75b02d8f350c626ef755f87 460 ProSitePatterns PS00872 Sodium:galactoside symporter family signature. 62 87 - T 13-10-2018 IPR018043 Sodium:galactoside symporter, conserved site GO:0005215|GO:0006814|GO:0016020 CS348_20875 7b983fc8c9223a03d5b0f5f58158ba89 78 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 1 78 2.0E-20 T 13-10-2018 IPR009885 Protein of unknown function DUF1435 CS348_20875 7b983fc8c9223a03d5b0f5f58158ba89 78 Pfam PF07256 Protein of unknown function (DUF1435) 1 75 6.1E-33 T 13-10-2018 IPR009885 Protein of unknown function DUF1435 CS348_20730 a50edff4cef535efc55225ca8ed584f8 203 Pfam PF11363 Protein of unknown function (DUF3164) 9 201 2.0E-85 T 13-10-2018 IPR021505 Bacteriophage B3, Orf6 CS348_20125 42214b27ad6de905154471f22b89a272 166 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_20125 42214b27ad6de905154471f22b89a272 166 TIGRFAM TIGR00077 lspA: signal peptidase II 1 162 1.0E-59 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_20125 42214b27ad6de905154471f22b89a272 166 Pfam PF01252 Signal peptidase (SPase) II 16 155 2.1E-36 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_20125 42214b27ad6de905154471f22b89a272 166 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 16.722 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_20125 42214b27ad6de905154471f22b89a272 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 9.1E-20 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_20125 42214b27ad6de905154471f22b89a272 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 9.1E-20 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_20125 42214b27ad6de905154471f22b89a272 166 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 9.1E-20 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 Gene3D G3DSA:1.20.950.20 25 232 8.5E-73 T 13-10-2018 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 35 245 2.3E-66 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 Pfam PF01292 Prokaryotic cytochrome b561 37 242 2.3E-27 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 ProSitePatterns PS00882 Nickel-dependent hydrogenases b-type cytochrome subunit signature 1. 42 59 - T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 SUPERFAMILY SSF81342 34 245 5.89E-37 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 155 174 2.9E-44 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 203 225 2.9E-44 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 234 247 2.9E-44 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 39 62 2.9E-44 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_12350 f680c97acd897e167efa9e2806a084c7 247 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 77 101 2.9E-44 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 CS348_00535 b9731caf78e0b586a9b763c11ad663a8 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 1.2E-43 T 13-10-2018 IPR013527 YicC-like, N-terminal CS348_00535 b9731caf78e0b586a9b763c11ad663a8 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 3.5E-34 T 13-10-2018 IPR013551 Domain of unknown function DUF1732 CS348_00535 b9731caf78e0b586a9b763c11ad663a8 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 3.3E-138 T 13-10-2018 IPR005229 Conserved hypothetical protein CHP00255 CS348_23290 0b2b1d8b7e6a18f9270a27cabdce00db 72 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 3.6E-21 T 13-10-2018 IPR007684 Zinc finger, Ogr/Delta-type CS348_02955 efe24112ab8d08dfdee9a92148a41a74 523 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 119 521 3.3E-145 T 13-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 CS348_02955 efe24112ab8d08dfdee9a92148a41a74 523 Hamap MF_02031 Galactarate dehydratase (L-threo-forming) [garD]. 2 523 80.354 T 13-10-2018 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 CS348_02955 efe24112ab8d08dfdee9a92148a41a74 523 SMART SM00858 22 92 2.8E-13 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CS348_02955 efe24112ab8d08dfdee9a92148a41a74 523 Pfam PF08666 SAF domain 22 91 9.4E-13 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CS348_02955 efe24112ab8d08dfdee9a92148a41a74 523 Gene3D G3DSA:3.90.1210.30 14 92 2.1E-31 T 13-10-2018 CS348_02955 efe24112ab8d08dfdee9a92148a41a74 523 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 15 523 5.0E-284 T 13-10-2018 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497 CS348_05455 e43759c474896b7a1996c94dc305d131 258 Gene3D G3DSA:3.20.20.150 1 258 3.7E-77 T 13-10-2018 CS348_05455 e43759c474896b7a1996c94dc305d131 258 SUPERFAMILY SSF51658 1 256 1.02E-81 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_05455 e43759c474896b7a1996c94dc305d131 258 PIRSF PIRSF006241 1 258 1.0E-85 T 13-10-2018 IPR026040 Hydroxypyruvate isomerase-like CS348_05455 e43759c474896b7a1996c94dc305d131 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 7.9E-34 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CS348_11780 f974d34b2b530cb5da7f882fe6a2daa2 220 SUPERFAMILY SSF53335 20 160 4.38E-16 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_11780 f974d34b2b530cb5da7f882fe6a2daa2 220 Gene3D G3DSA:3.40.50.150 26 214 3.6E-15 T 13-10-2018 CS348_11780 f974d34b2b530cb5da7f882fe6a2daa2 220 Pfam PF08242 Methyltransferase domain 54 151 1.8E-8 T 13-10-2018 IPR013217 Methyltransferase type 12 CS348_11780 f974d34b2b530cb5da7f882fe6a2daa2 220 PIRSF PIRSF011491 1 219 2.1E-99 T 13-10-2018 IPR016584 Methyltransferase VrtF-like CS348_19575 af2cd054d2f3987cb6da1a70763a302e 468 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 11 446 1.6E-125 T 13-10-2018 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 CS348_19575 af2cd054d2f3987cb6da1a70763a302e 468 Pfam PF13347 MFS/sugar transport protein 13 432 3.4E-104 T 13-10-2018 CS348_19575 af2cd054d2f3987cb6da1a70763a302e 468 Gene3D G3DSA:1.20.1250.20 15 424 4.6E-29 T 13-10-2018 CS348_19575 af2cd054d2f3987cb6da1a70763a302e 468 SUPERFAMILY SSF103473 12 427 6.54E-43 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 3.3E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 3.3E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 3.3E-19 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 30.389 T 13-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 Gene3D G3DSA:4.10.520.10 41 94 3.4E-34 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 Gene3D G3DSA:4.10.520.10 2 40 4.6E-19 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 SUPERFAMILY SSF47729 1 91 8.54E-30 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 13-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 1.5E-53 T 13-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 3.2E-30 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_15315 b144edbbf2f63ebfa6bd8b3d4a9eef22 94 SMART SM00411 1 91 1.9E-43 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CS348_23175 370ef8b663a77f6f9bbe545b48e90a6c 198 Pfam PF07305 Protein of unknown function (DUF1454) 10 192 4.8E-83 T 13-10-2018 IPR009918 Protein of unknown function DUF1454 CS348_13720 7c3d3c57ebe1bff8405678e4dd743538 80 Gene3D G3DSA:3.30.730.20 14 80 5.9E-45 T 13-10-2018 IPR038463 CedA-like superfamily CS348_13720 7c3d3c57ebe1bff8405678e4dd743538 80 Hamap MF_01580 Cell division activator CedA [cedA]. 1 80 34.132 T 13-10-2018 IPR019666 Cell division activator CedA GO:0003677|GO:0051301 CS348_13720 7c3d3c57ebe1bff8405678e4dd743538 80 Pfam PF10729 Cell division activator CedA 2 78 6.2E-48 T 13-10-2018 IPR019666 Cell division activator CedA GO:0003677|GO:0051301 CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 Pfam PF01368 DHH family 74 214 7.8E-9 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 SUPERFAMILY SSF64182 48 465 6.41E-117 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 Pfam PF02272 DHHA1 domain 322 452 1.3E-25 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 574 1.8E-167 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 Gene3D G3DSA:3.10.310.30 328 457 1.9E-31 T 13-10-2018 CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 Gene3D G3DSA:3.90.1640.30 48 326 1.0E-88 T 13-10-2018 CS348_04770 26591c63326bc722c7a51b4e06b16a35 577 Gene3D G3DSA:2.40.50.460 458 576 5.7E-9 T 13-10-2018 CS348_25640 d7ac4fec546ce36452d91f0a1e0253dc 167 Pfam PF05345 Putative Ig domain 18 56 1.1E-7 T 13-10-2018 IPR008009 Putative Ig CS348_25640 d7ac4fec546ce36452d91f0a1e0253dc 167 SUPERFAMILY SSF49313 14 74 4.39E-8 T 13-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 CS348_25640 d7ac4fec546ce36452d91f0a1e0253dc 167 Gene3D G3DSA:2.60.40.10 77 167 1.1E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_25640 d7ac4fec546ce36452d91f0a1e0253dc 167 Gene3D G3DSA:2.60.40.10 2 73 4.1E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 Gene3D G3DSA:1.20.1050.90 120 297 1.1E-79 T 13-10-2018 CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 357 97.937 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 Gene3D G3DSA:3.40.50.300 8 331 1.1E-79 T 13-10-2018 CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 354 7.0E-41 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 SUPERFAMILY SSF52540 1 342 1.45E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 2.4E-139 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CS348_00015 70db7ca8f2de5e25b487fe3e2046203a 357 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 13-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 CS348_00685 54df5939c0d482a74f8dd667e6ed2605 320 Pfam PF04748 Divergent polysaccharide deacetylase 28 237 3.3E-76 T 13-10-2018 IPR006837 Divergent polysaccharide deacetylase CS348_00685 54df5939c0d482a74f8dd667e6ed2605 320 Gene3D G3DSA:3.20.20.370 15 247 7.9E-74 T 13-10-2018 CS348_00685 54df5939c0d482a74f8dd667e6ed2605 320 SUPERFAMILY SSF88713 24 238 9.12E-74 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CS348_08375 d29c084e339bbfcfe72a2f4da8272e5c 289 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 226 237 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CS348_08375 d29c084e339bbfcfe72a2f4da8272e5c 289 SUPERFAMILY SSF54862 103 276 7.85E-19 T 13-10-2018 CS348_08375 d29c084e339bbfcfe72a2f4da8272e5c 289 Pfam PF12801 4Fe-4S binding domain 83 126 1.5E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08375 d29c084e339bbfcfe72a2f4da8272e5c 289 Pfam PF12801 4Fe-4S binding domain 179 211 1.4E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CS348_08375 d29c084e339bbfcfe72a2f4da8272e5c 289 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 24 278 1.3E-113 T 13-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family CS348_08375 d29c084e339bbfcfe72a2f4da8272e5c 289 Gene3D G3DSA:3.30.70.20 216 287 3.2E-7 T 13-10-2018 CS348_16495 b65bc0d20824eb71e3cffbf0f7719da2 359 Gene3D G3DSA:1.10.3470.10 26 359 1.7E-95 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_16495 b65bc0d20824eb71e3cffbf0f7719da2 359 Pfam PF01032 FecCD transport family 41 354 2.5E-82 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_16495 b65bc0d20824eb71e3cffbf0f7719da2 359 SUPERFAMILY SSF81345 22 354 9.15E-78 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_00440 413b1dbbc27555bf5f67361ef272ff31 325 Pfam PF13310 Virulence protein RhuM family 55 305 2.8E-111 T 13-10-2018 IPR011204 Virulence protein RhuM-like CS348_00440 413b1dbbc27555bf5f67361ef272ff31 325 PIRSF PIRSF015268 1 324 1.9E-149 T 13-10-2018 IPR011204 Virulence protein RhuM-like CS348_25155 770389c33bb5b2a0cbab6245d8926cf5 143 Pfam PF07419 PilM 25 141 6.2E-28 T 13-10-2018 IPR009987 PilM, inner membrane CS348_25155 770389c33bb5b2a0cbab6245d8926cf5 143 Gene3D G3DSA:3.30.450.360 25 143 4.1E-41 T 13-10-2018 CS348_05275 7475b93443562b5b972adb04b88dd63d 120 TIGRFAM TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein 3 120 4.7E-39 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CS348_05275 7475b93443562b5b972adb04b88dd63d 120 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 2.6E-33 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CS348_05275 7475b93443562b5b972adb04b88dd63d 120 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 5 120 7.5E-34 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CS348_05275 7475b93443562b5b972adb04b88dd63d 120 SUPERFAMILY SSF55620 3 119 8.89E-41 T 13-10-2018 CS348_05275 7475b93443562b5b972adb04b88dd63d 120 PIRSF PIRSF006113 1 120 6.1E-55 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CS348_05275 7475b93443562b5b972adb04b88dd63d 120 Gene3D G3DSA:3.30.479.10 1 120 3.1E-50 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 CS348_03070 40431e9e48132f5a7e8d38a0153a2b63 132 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 19 127 5.8E-23 T 13-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III CS348_24565 64cbe479c8127648ab03a1589ff15ee7 487 PIRSF PIRSF005353 47 486 5.2E-177 T 13-10-2018 IPR026033 Purine permease PbuG-like CS348_24565 64cbe479c8127648ab03a1589ff15ee7 487 Pfam PF00860 Permease family 73 446 3.1E-44 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CS348_03110 886a0b2fe28cf334b06b3b35ee85e929 332 SUPERFAMILY SSF55347 127 292 3.27E-21 T 13-10-2018 CS348_03110 886a0b2fe28cf334b06b3b35ee85e929 332 SUPERFAMILY SSF51735 2 152 2.91E-43 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_03110 886a0b2fe28cf334b06b3b35ee85e929 332 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 5.9E-26 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 CS348_03110 886a0b2fe28cf334b06b3b35ee85e929 332 Gene3D G3DSA:3.40.50.720 1 135 5.9E-35 T 13-10-2018 CS348_03110 886a0b2fe28cf334b06b3b35ee85e929 332 Gene3D G3DSA:3.30.360.10 136 325 1.5E-50 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 4.3E-115 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 SUPERFAMILY SSF118215 8 412 6.54E-121 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 Gene3D G3DSA:1.10.3860.10 1 427 7.3E-135 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 3.7E-52 T 13-10-2018 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 48.269 T 13-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 CS348_22260 28cb3dc38e80708494af0e8e0f458464 436 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 13-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site CS348_13745 13e211bb61e8f529b87b3e307e8fc607 115 SUPERFAMILY SSF46973 15 113 1.22E-33 T 13-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 CS348_13745 13e211bb61e8f529b87b3e307e8fc607 115 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 19 112 3.8E-32 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CS348_13745 13e211bb61e8f529b87b3e307e8fc607 115 PIRSF PIRSF000699 10 115 4.3E-39 T 13-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 CS348_13745 13e211bb61e8f529b87b3e307e8fc607 115 Gene3D G3DSA:1.20.58.280 14 115 6.2E-37 T 13-10-2018 CS348_02155 4698f5bf9e3cbf89f6da95e94c63887e 89 Pfam PF03889 Domain of unknown function 9 45 6.6E-22 T 13-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 CS348_04630 6a5b561575b25c70ad80b54263babef0 248 Pfam PF04402 Protein of unknown function (DUF541) 30 231 1.1E-44 T 13-10-2018 IPR007497 Protein of unknown function DUF541 CS348_04630 6a5b561575b25c70ad80b54263babef0 248 Gene3D G3DSA:3.30.110.170 33 232 3.3E-49 T 13-10-2018 CS348_04630 6a5b561575b25c70ad80b54263babef0 248 Gene3D G3DSA:3.30.70.2970 42 148 3.3E-49 T 13-10-2018 CS348_19485 8a99de5ed85f98b78e4f1080034063c7 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 1 115 4.0E-63 T 13-10-2018 CS348_19485 8a99de5ed85f98b78e4f1080034063c7 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 24 106 1.9E-9 T 13-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like CS348_19485 8a99de5ed85f98b78e4f1080034063c7 115 Gene3D G3DSA:1.20.58.1630 23 115 7.1E-10 T 13-10-2018 IPR038432 PulS/OutS-like superfamily CS348_19315 09d81a7f9c69056b36c690d3b89ed3fd 679 Pfam PF01032 FecCD transport family 37 342 2.7E-63 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_19315 09d81a7f9c69056b36c690d3b89ed3fd 679 Pfam PF01032 FecCD transport family 399 676 6.3E-73 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_19315 09d81a7f9c69056b36c690d3b89ed3fd 679 SUPERFAMILY SSF81345 21 344 4.32E-60 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_19315 09d81a7f9c69056b36c690d3b89ed3fd 679 Gene3D G3DSA:1.10.3470.10 23 349 7.2E-68 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_19315 09d81a7f9c69056b36c690d3b89ed3fd 679 SUPERFAMILY SSF81345 364 676 2.62E-72 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_19315 09d81a7f9c69056b36c690d3b89ed3fd 679 Gene3D G3DSA:1.10.3470.10 357 679 4.9E-80 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_24165 dda76836e077afcae0322414f2070718 416 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 39.562 T 13-10-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 CS348_24165 dda76836e077afcae0322414f2070718 416 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 2.2E-8 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CS348_20590 3f2ede350c7170e2a2608b8565cb9f87 475 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 182 356 1.3E-31 T 13-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain CS348_20590 3f2ede350c7170e2a2608b8565cb9f87 475 Pfam PF17482 Phage tail sheath C-terminal domain 368 464 1.3E-13 T 13-10-2018 IPR020287 Tail sheath protein, C-terminal domain CS348_05015 1fc5e163b0e2901fa032abbb95cf2c25 106 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 33 104 4.2E-25 T 13-10-2018 IPR022204 Prepilin peptidase dependent protein C CS348_05015 1fc5e163b0e2901fa032abbb95cf2c25 106 Pfam PF07963 Prokaryotic N-terminal methylation motif 7 30 1.3E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_05015 1fc5e163b0e2901fa032abbb95cf2c25 106 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 4.9E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_05015 1fc5e163b0e2901fa032abbb95cf2c25 106 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_07310 1b90470f5facb27ee7862af539482220 350 Gene3D G3DSA:1.10.10.60 240 346 4.9E-31 T 13-10-2018 CS348_07310 1b90470f5facb27ee7862af539482220 350 SMART SM00342 256 342 1.4E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_07310 1b90470f5facb27ee7862af539482220 350 Pfam PF12833 Helix-turn-helix domain 262 342 9.7E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_07310 1b90470f5facb27ee7862af539482220 350 SUPERFAMILY SSF46689 240 290 1.97E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_07310 1b90470f5facb27ee7862af539482220 350 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 293 338 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_23685 5dfad4b8cef7495f870ec05e97414182 292 Pfam PF01791 DeoC/LacD family aldolase 17 257 4.6E-64 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_23685 5dfad4b8cef7495f870ec05e97414182 292 PIRSF PIRSF037840 1 291 1.1E-135 T 13-10-2018 IPR017291 Sulfofructosephosphate aldolase, YihT GO:0061595|GO:1902777 MetaCyc: PWY-7446 CS348_23685 5dfad4b8cef7495f870ec05e97414182 292 Gene3D G3DSA:3.20.20.70 1 292 3.3E-88 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23685 5dfad4b8cef7495f870ec05e97414182 292 Hamap MF_01912 Sulfofructosephosphate aldolase. 1 292 62.755 T 13-10-2018 IPR017291 Sulfofructosephosphate aldolase, YihT GO:0061595|GO:1902777 MetaCyc: PWY-7446 CS348_23685 5dfad4b8cef7495f870ec05e97414182 292 SUPERFAMILY SSF51569 4 288 9.77E-66 T 13-10-2018 CS348_23685 5dfad4b8cef7495f870ec05e97414182 292 SMART SM01133 16 258 4.9E-18 T 13-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 CS348_10345 10b7dbcb0d6bfd12c53559e32d04fd7d 117 Pfam PF13995 YebF-like protein 27 115 4.2E-41 T 13-10-2018 IPR025603 YebF/Colicin-M immunity protein CS348_10345 10b7dbcb0d6bfd12c53559e32d04fd7d 117 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 24 117 2.0E-49 T 13-10-2018 IPR025603 YebF/Colicin-M immunity protein CS348_10345 10b7dbcb0d6bfd12c53559e32d04fd7d 117 Hamap MF_01435 Protein YebF [yebF]. 1 117 35.291 T 13-10-2018 IPR020236 Uncharacterised protein family YebF CS348_10345 10b7dbcb0d6bfd12c53559e32d04fd7d 117 Gene3D G3DSA:3.10.450.300 21 117 3.5E-43 T 13-10-2018 IPR038703 YebF/Cmi superfamily CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 Pfam PF05175 Methyltransferase small domain 33 143 2.2E-5 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 43 57 9.8E-9 T 13-10-2018 CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 114 138 9.8E-9 T 13-10-2018 CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 19 35 9.8E-9 T 13-10-2018 CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 102 114 9.8E-9 T 13-10-2018 CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 Gene3D G3DSA:3.40.50.150 22 176 2.6E-21 T 13-10-2018 CS348_25460 86fb8d69b71c61c5224d505034b04b2e 176 SUPERFAMILY SSF53335 21 175 1.89E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_12335 4959f7d40cb5a42031a35717e94ad1d7 363 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 25 347 1.7E-43 T 13-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal CS348_12335 4959f7d40cb5a42031a35717e94ad1d7 363 Gene3D G3DSA:3.60.60.10 25 357 4.1E-86 T 13-10-2018 CS348_12335 4959f7d40cb5a42031a35717e94ad1d7 363 SUPERFAMILY SSF56235 25 354 4.48E-80 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CS348_08655 15e6bcdcf0fc3cfa805a1113fe64283d 129 SUPERFAMILY SSF47413 7 66 5.04E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_08655 15e6bcdcf0fc3cfa805a1113fe64283d 129 SMART SM00530 18 68 5.9E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_08655 15e6bcdcf0fc3cfa805a1113fe64283d 129 Pfam PF01381 Helix-turn-helix 19 66 1.5E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_08655 15e6bcdcf0fc3cfa805a1113fe64283d 129 Gene3D G3DSA:1.10.260.40 4 80 4.7E-18 T 13-10-2018 CS348_22800 07855c7e6cc538545d278f04834f5e72 66 Pfam PF02597 ThiS family 3 66 1.4E-14 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 CS348_22800 07855c7e6cc538545d278f04834f5e72 66 Gene3D G3DSA:3.10.20.30 1 66 2.5E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_22800 07855c7e6cc538545d278f04834f5e72 66 SUPERFAMILY SSF54285 1 66 1.45E-17 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CS348_22800 07855c7e6cc538545d278f04834f5e72 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 5.2E-19 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis CS348_09165 6e2f0d6e7273c3570d85de93958f23db 467 TIGRFAM TIGR04004 WcaM: colanic acid biosynthesis protein WcaM 3 465 7.8E-294 T 13-10-2018 IPR023882 Colanic acid biosynthesis WcaM CS348_09165 6e2f0d6e7273c3570d85de93958f23db 467 Gene3D G3DSA:2.160.20.10 38 383 2.7E-8 T 13-10-2018 IPR012334 Pectin lyase fold CS348_09165 6e2f0d6e7273c3570d85de93958f23db 467 SUPERFAMILY SSF51126 54 325 4.56E-21 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CS348_17120 8724860a754c0a30ceab7ba2e29be548 98 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 7 86 1.6E-28 T 13-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein CS348_17120 8724860a754c0a30ceab7ba2e29be548 98 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 26.264 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_17120 8724860a754c0a30ceab7ba2e29be548 98 PIRSF PIRSF002736 1 97 1.9E-38 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_17120 8724860a754c0a30ceab7ba2e29be548 98 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 74 1.0E-35 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_17120 8724860a754c0a30ceab7ba2e29be548 98 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 2.8E-29 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 CS348_24220 850143d49315e8891aad60bd107000ef 109 Pfam PF00085 Thioredoxin 5 106 2.0E-34 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CS348_24220 850143d49315e8891aad60bd107000ef 109 PIRSF PIRSF000077 2 108 5.9E-45 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CS348_24220 850143d49315e8891aad60bd107000ef 109 Gene3D G3DSA:3.40.30.10 1 108 3.4E-38 T 13-10-2018 CS348_24220 850143d49315e8891aad60bd107000ef 109 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 CS348_24220 850143d49315e8891aad60bd107000ef 109 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 2.1E-39 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CS348_24220 850143d49315e8891aad60bd107000ef 109 SUPERFAMILY SSF52833 2 108 1.04E-41 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_24220 850143d49315e8891aad60bd107000ef 109 PRINTS PR00421 Thioredoxin family signature 24 32 3.8E-10 T 13-10-2018 CS348_24220 850143d49315e8891aad60bd107000ef 109 PRINTS PR00421 Thioredoxin family signature 72 83 3.8E-10 T 13-10-2018 CS348_24220 850143d49315e8891aad60bd107000ef 109 PRINTS PR00421 Thioredoxin family signature 32 41 3.8E-10 T 13-10-2018 CS348_18350 5889dfde2fc769eeb92eb2c470f39b5f 193 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 1 193 54.218 T 13-10-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 CS348_18350 5889dfde2fc769eeb92eb2c470f39b5f 193 PIRSF PIRSF011489 1 193 4.8E-83 T 13-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 CS348_18350 5889dfde2fc769eeb92eb2c470f39b5f 193 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 186 1.7E-29 T 13-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 219 7.1E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 PIRSF PIRSF016578 237 385 2.0E-4 T 13-10-2018 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 PIRSF PIRSF016578 2 194 1.6E-9 T 13-10-2018 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 SUPERFAMILY SSF56645 6 244 7.72E-62 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 116 6.0E-25 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 Gene3D G3DSA:1.10.540.10 5 117 6.6E-29 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 Gene3D G3DSA:1.20.140.10 237 384 3.9E-34 T 13-10-2018 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 379 3.5E-30 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 SUPERFAMILY SSF47203 232 385 1.35E-40 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 13-10-2018 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 CS348_16040 d2b0cef52dd0744c977deff2a0bd98b6 387 Gene3D G3DSA:2.40.110.10 121 236 5.8E-33 T 13-10-2018 CS348_17070 da3a8d0b1e214359e26e6fca7de8539c 262 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 143 163 - T 13-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site CS348_17070 da3a8d0b1e214359e26e6fca7de8539c 262 Gene3D G3DSA:3.60.110.10 1 258 2.2E-62 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_17070 da3a8d0b1e214359e26e6fca7de8539c 262 Pfam PF00795 Carbon-nitrogen hydrolase 15 245 8.0E-37 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CS348_17070 da3a8d0b1e214359e26e6fca7de8539c 262 SUPERFAMILY SSF56317 1 254 4.58E-56 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_22585 b6dd9254fdaff141fcb6d601f9a62c8d 212 Pfam PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF 13 206 3.7E-60 T 13-10-2018 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB CS348_22585 b6dd9254fdaff141fcb6d601f9a62c8d 212 Gene3D G3DSA:2.40.360.10 17 212 4.8E-58 T 13-10-2018 IPR023373 YmcC-like superfamily CS348_22585 b6dd9254fdaff141fcb6d601f9a62c8d 212 SUPERFAMILY SSF159270 20 209 1.06E-55 T 13-10-2018 IPR023373 YmcC-like superfamily CS348_03565 2363b218cbbd4f033fc07057b98d165c 162 Gene3D G3DSA:3.30.1460.40 1 136 1.7E-48 T 13-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily CS348_03565 2363b218cbbd4f033fc07057b98d165c 162 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 16 153 7.6E-51 T 13-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE CS348_03565 2363b218cbbd4f033fc07057b98d165c 162 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 12 155 1.0E-44 T 13-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE CS348_03565 2363b218cbbd4f033fc07057b98d165c 162 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 16 157 2.0E-71 T 13-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE CS348_09305 8497f509a8b2006f1c2bf6feaca5936b 274 Gene3D G3DSA:3.40.50.720 1 269 5.4E-61 T 13-10-2018 CS348_09305 8497f509a8b2006f1c2bf6feaca5936b 274 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 213 9.6E-9 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_09305 8497f509a8b2006f1c2bf6feaca5936b 274 SUPERFAMILY SSF51735 2 266 1.76E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_00805 4cb76356f72bb11e540273dd313afbf3 293 Gene3D G3DSA:3.30.420.40 105 292 1.6E-49 T 13-10-2018 CS348_00805 4cb76356f72bb11e540273dd313afbf3 293 Gene3D G3DSA:3.30.420.40 1 104 1.3E-22 T 13-10-2018 CS348_00805 4cb76356f72bb11e540273dd313afbf3 293 Pfam PF00480 ROK family 4 288 5.1E-52 T 13-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CS348_00805 4cb76356f72bb11e540273dd313afbf3 293 SUPERFAMILY SSF53067 1 290 2.26E-60 T 13-10-2018 CS348_03260 d6c2e4bb9559c25f22be6de393938a12 118 Pfam PF04380 Membrane fusogenic activity 21 98 6.1E-29 T 13-10-2018 IPR007475 Membrane fusogenic activity CS348_07465 9df041ac01ac814ec7f7e1cd0fc8f5d4 418 Gene3D G3DSA:1.20.1250.20 199 415 4.6E-31 T 13-10-2018 CS348_07465 9df041ac01ac814ec7f7e1cd0fc8f5d4 418 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 418 1.3E-213 T 13-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 CS348_07465 9df041ac01ac814ec7f7e1cd0fc8f5d4 418 SUPERFAMILY SSF103473 8 407 2.35E-35 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_07465 9df041ac01ac814ec7f7e1cd0fc8f5d4 418 Pfam PF03825 Nucleoside H+ symporter 1 406 9.7E-185 T 13-10-2018 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 CS348_07465 9df041ac01ac814ec7f7e1cd0fc8f5d4 418 Gene3D G3DSA:1.20.1250.20 5 191 2.2E-13 T 13-10-2018 CS348_17430 21c7ba64d8974d9b56e5ff0549fa830e 721 SUPERFAMILY SSF69369 67 287 3.66E-33 T 13-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 CS348_17430 21c7ba64d8974d9b56e5ff0549fa830e 721 Pfam PF03515 Colicin-like bacteriocin tRNase domain 22 285 1.8E-49 T 13-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 CS348_17430 21c7ba64d8974d9b56e5ff0549fa830e 721 SUPERFAMILY SSF69369 337 606 1.29E-45 T 13-10-2018 IPR036302 Pyosin/cloacin translocation domain superfamily GO:0009405 CS348_17430 21c7ba64d8974d9b56e5ff0549fa830e 721 Pfam PF06958 S-type Pyocin 434 570 1.3E-27 T 13-10-2018 IPR016128 Pyosin/cloacin translocation domain GO:0009405 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 SUPERFAMILY SSF53067 2 205 1.08E-26 T 13-10-2018 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 Pfam PF00012 Hsp70 protein 331 423 1.5E-5 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 Pfam PF00012 Hsp70 protein 3 228 1.9E-15 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 Gene3D G3DSA:3.30.420.40 379 433 5.8E-13 T 13-10-2018 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 Gene3D G3DSA:3.90.640.10 307 378 5.8E-13 T 13-10-2018 CS348_09025 5d06195ed0d9813dd47b3341bb145930 450 SUPERFAMILY SSF53067 208 447 6.22E-30 T 13-10-2018 CS348_17240 afbba06f6eafa8cc8696aff6127ba057 65 Pfam PF04328 Selenoprotein, putative 5 65 3.5E-30 T 13-10-2018 IPR007423 Selenoprotein, putative CS348_20890 0469e8b518fadce60d0501967f40074c 152 Pfam PF04073 Aminoacyl-tRNA editing domain 25 139 2.8E-29 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CS348_20890 0469e8b518fadce60d0501967f40074c 152 SUPERFAMILY SSF55826 4 152 3.4E-41 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_20890 0469e8b518fadce60d0501967f40074c 152 Gene3D G3DSA:3.90.960.10 1 152 1.9E-46 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_12890 c4a899bdbe6f3907641e0df804af3c2d 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 CS348_12890 c4a899bdbe6f3907641e0df804af3c2d 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 2.6E-68 T 13-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 CS348_12890 c4a899bdbe6f3907641e0df804af3c2d 135 Gene3D G3DSA:3.10.180.10 1 131 8.5E-50 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_12890 c4a899bdbe6f3907641e0df804af3c2d 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 1.8E-24 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CS348_12890 c4a899bdbe6f3907641e0df804af3c2d 135 SUPERFAMILY SSF54593 1 130 3.22E-35 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CS348_12890 c4a899bdbe6f3907641e0df804af3c2d 135 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 13-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 CS348_16375 7cd33b9929fe2e7840b87672b45fa566 158 SUPERFAMILY SSF49777 1 157 8.9E-52 T 13-10-2018 IPR036610 PEBP-like superfamily CS348_16375 7cd33b9929fe2e7840b87672b45fa566 158 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 18 157 2.0E-56 T 13-10-2018 IPR005247 YbhB/YbcL CS348_16375 7cd33b9929fe2e7840b87672b45fa566 158 Gene3D G3DSA:3.90.280.10 1 158 3.9E-54 T 13-10-2018 IPR036610 PEBP-like superfamily CS348_16375 7cd33b9929fe2e7840b87672b45fa566 158 Pfam PF01161 Phosphatidylethanolamine-binding protein 15 157 4.2E-38 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein CS348_17015 7cfea440500d38352d8bc399a7e5d425 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 8.5E-38 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CS348_17015 7cfea440500d38352d8bc399a7e5d425 105 SUPERFAMILY SSF81301 4 105 4.74E-37 T 13-10-2018 CS348_17015 7cfea440500d38352d8bc399a7e5d425 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 2.7E-28 T 13-10-2018 CS348_17015 7cfea440500d38352d8bc399a7e5d425 105 Gene3D G3DSA:3.30.460.10 2 105 9.4E-36 T 13-10-2018 CS348_17015 7cfea440500d38352d8bc399a7e5d425 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.635 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CS348_04315 6d34a36eb82c98219383df3aced42a92 409 SUPERFAMILY SSF103473 3 407 8.89E-44 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_04315 6d34a36eb82c98219383df3aced42a92 409 Gene3D G3DSA:1.20.1250.20 2 193 5.1E-17 T 13-10-2018 CS348_04315 6d34a36eb82c98219383df3aced42a92 409 Pfam PF07690 Major Facilitator Superfamily 29 362 8.5E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_04315 6d34a36eb82c98219383df3aced42a92 409 Gene3D G3DSA:1.20.1250.20 204 407 1.1E-21 T 13-10-2018 CS348_04330 1a6c8e7c4b1f797132169343fd45c73e 217 Pfam PF08348 YheO-like PAS domain 17 125 1.4E-30 T 13-10-2018 IPR013559 YheO-like CS348_04330 1a6c8e7c4b1f797132169343fd45c73e 217 Pfam PF13309 HTH domain 154 211 2.4E-11 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain CS348_04330 1a6c8e7c4b1f797132169343fd45c73e 217 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 16 117 2.0E-45 T 13-10-2018 IPR013559 YheO-like CS348_02910 9c71dfa06347621e75afce24c63274c9 680 SUPERFAMILY SSF53822 258 678 7.4E-76 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_02910 9c71dfa06347621e75afce24c63274c9 680 Pfam PF04348 LppC putative lipoprotein 41 287 5.3E-45 T 13-10-2018 IPR007443 Penicillin-binding protein activator LpoA CS348_02910 9c71dfa06347621e75afce24c63274c9 680 Pfam PF04348 LppC putative lipoprotein 357 674 1.4E-84 T 13-10-2018 IPR007443 Penicillin-binding protein activator LpoA CS348_02910 9c71dfa06347621e75afce24c63274c9 680 Gene3D G3DSA:1.25.40.650 148 256 1.4E-42 T 13-10-2018 CS348_02910 9c71dfa06347621e75afce24c63274c9 680 Gene3D G3DSA:1.25.40.10 24 147 4.4E-50 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_02910 9c71dfa06347621e75afce24c63274c9 680 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 1 674 35.621 T 13-10-2018 IPR007443 Penicillin-binding protein activator LpoA CS348_25445 9675b4dba2c77bffd2be918b6150da2f 691 SMART SM00470 38 134 5.4E-8 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_25445 9675b4dba2c77bffd2be918b6150da2f 691 Pfam PF02195 ParB-like nuclease domain 39 133 6.8E-11 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_25445 9675b4dba2c77bffd2be918b6150da2f 691 Gene3D G3DSA:1.10.10.2830 121 230 3.7E-15 T 13-10-2018 CS348_25445 9675b4dba2c77bffd2be918b6150da2f 691 SUPERFAMILY SSF109709 127 221 1.57E-18 T 13-10-2018 CS348_25445 9675b4dba2c77bffd2be918b6150da2f 691 SUPERFAMILY SSF110849 38 136 6.8E-11 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_25445 9675b4dba2c77bffd2be918b6150da2f 691 Gene3D G3DSA:3.90.1530.30 52 109 2.9E-8 T 13-10-2018 CS348_15680 559672045d8a654a48b05e44ea7de9ae 200 TIGRFAM TIGR01543 proheadase_HK97: phage prohead protease, HK97 family 25 168 1.2E-28 T 13-10-2018 IPR006433 Prohead protease CS348_15680 559672045d8a654a48b05e44ea7de9ae 200 Pfam PF04586 Caudovirus prohead serine protease 13 173 8.1E-48 T 13-10-2018 IPR006433 Prohead protease CS348_00165 03f2a050810fd144adb759f3b1e41d74 176 Gene3D G3DSA:3.20.20.70 109 163 1.7E-10 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00165 03f2a050810fd144adb759f3b1e41d74 176 Gene3D G3DSA:3.20.20.70 8 108 3.8E-14 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_00165 03f2a050810fd144adb759f3b1e41d74 176 SUPERFAMILY SSF102114 14 128 1.88E-5 T 13-10-2018 CS348_00165 03f2a050810fd144adb759f3b1e41d74 176 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 176 2.0E-98 T 13-10-2018 CS348_04205 36c2955e1ff4cb83dd3f515eb8e349fd 326 Pfam PF06834 TraU protein 34 314 1.6E-70 T 13-10-2018 IPR009649 TraU CS348_04205 36c2955e1ff4cb83dd3f515eb8e349fd 326 TIGRFAM TIGR03756 conj_TIGR03756: integrating conjugative element protein, PFL_4710 family 29 324 2.1E-132 T 13-10-2018 IPR026331 Integrating conjugative element protein PFL_4710 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PIRSF PIRSF000114 1 336 6.9E-101 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.344 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 SUPERFAMILY SSF48179 184 335 1.02E-56 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 2.6E-52 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 Gene3D G3DSA:3.40.50.720 1 191 5.8E-56 T 13-10-2018 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 163 3.6E-50 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 Gene3D G3DSA:1.10.1040.10 193 339 5.1E-52 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 SUPERFAMILY SSF51735 8 182 7.65E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 4.1E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 4.1E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 4.1E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 4.1E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 4.1E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_00715 75ae47095a77b8c3980ec0175bba08d6 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 4.1E-42 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CS348_19390 5b46230aa840c1729ea75590f4df4285 188 Gene3D G3DSA:2.60.40.1090 26 187 5.0E-12 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_19390 5b46230aa840c1729ea75590f4df4285 188 SUPERFAMILY SSF49401 27 188 2.11E-15 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_19390 5b46230aa840c1729ea75590f4df4285 188 Pfam PF00419 Fimbrial protein 30 188 1.3E-11 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_00785 25dac70401866a84548ba14192e6cc7c 202 Gene3D G3DSA:1.20.1050.10 79 191 1.2E-72 T 13-10-2018 CS348_00785 25dac70401866a84548ba14192e6cc7c 202 SUPERFAMILY SSF52833 1 100 1.17E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_00785 25dac70401866a84548ba14192e6cc7c 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 97 192 1.4E-11 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CS348_00785 25dac70401866a84548ba14192e6cc7c 202 SUPERFAMILY SSF47616 73 198 8.67E-17 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_00785 25dac70401866a84548ba14192e6cc7c 202 Gene3D G3DSA:3.40.30.10 3 195 1.2E-72 T 13-10-2018 CS348_00785 25dac70401866a84548ba14192e6cc7c 202 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 71 3.0E-14 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_13145 0000f4890fa63685eeef275a0532a378 206 Gene3D G3DSA:3.40.50.2300 1 127 5.9E-34 T 13-10-2018 CS348_13145 0000f4890fa63685eeef275a0532a378 206 Pfam PF00196 Bacterial regulatory proteins, luxR family 135 188 2.3E-18 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13145 0000f4890fa63685eeef275a0532a378 206 Gene3D G3DSA:1.10.10.10 132 191 6.9E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_13145 0000f4890fa63685eeef275a0532a378 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 166 4.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13145 0000f4890fa63685eeef275a0532a378 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 150 4.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13145 0000f4890fa63685eeef275a0532a378 206 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 178 4.2E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13145 0000f4890fa63685eeef275a0532a378 206 Pfam PF00072 Response regulator receiver domain 4 113 1.6E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_13145 0000f4890fa63685eeef275a0532a378 206 ProSitePatterns PS00622 LuxR-type HTH domain signature. 150 177 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13145 0000f4890fa63685eeef275a0532a378 206 SMART SM00448 2 113 1.7E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_13145 0000f4890fa63685eeef275a0532a378 206 SMART SM00421 133 190 2.6E-21 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_13145 0000f4890fa63685eeef275a0532a378 206 SUPERFAMILY SSF52172 2 163 5.41E-30 T 13-10-2018 IPR011006 CheY-like superfamily CS348_20670 54f7d10aa4d530964d4694fb75de488c 116 Pfam PF13272 Putative 2/3 transmembrane domain holin 16 116 4.8E-40 T 13-10-2018 IPR025140 Putative 2/3 transmembrane domain holin CS348_20695 b32e74ebe99eef5b8352169fbe569850 62 TIGRFAM TIGR04111 BcepMu_gp16: phage-associated protein, BcepMu gp16 family 2 56 2.4E-27 T 13-10-2018 IPR026365 Phage-associated protein, BcepMu gp16 family CS348_20695 b32e74ebe99eef5b8352169fbe569850 62 SUPERFAMILY SSF47413 4 58 4.69E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_07200 9ec6f68eb28bcfd1d573d77d47b06639 347 Pfam PF06674 Protein of unknown function (DUF1176) 25 347 7.4E-94 T 13-10-2018 IPR009560 Protein of unknown function DUF1176 CS348_00505 4181cf83cf26ea2fecc18adef347d76c 91 SUPERFAMILY SSF63562 1 79 8.2E-25 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CS348_00505 4181cf83cf26ea2fecc18adef347d76c 91 Gene3D G3DSA:3.90.940.10 1 91 1.7E-30 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CS348_00505 4181cf83cf26ea2fecc18adef347d76c 91 SMART SM01409 8 61 1.3E-15 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CS348_00505 4181cf83cf26ea2fecc18adef347d76c 91 Pfam PF01192 RNA polymerase Rpb6 10 59 1.9E-15 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CS348_00505 4181cf83cf26ea2fecc18adef347d76c 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 1.7E-30 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_00505 4181cf83cf26ea2fecc18adef347d76c 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.321 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CS348_17095 46571a9a73a64dd4ee9edc2dc67974a4 461 Pfam PF03606 C4-dicarboxylate anaerobic carrier 6 451 8.5E-133 T 13-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 CS348_17095 46571a9a73a64dd4ee9edc2dc67974a4 461 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 58 441 4.9E-191 T 13-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 CS348_05850 eb0eb62a278603e2e796cab685025871 257 Gene3D G3DSA:1.10.10.10 1 58 5.0E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_05850 eb0eb62a278603e2e796cab685025871 257 Pfam PF00455 DeoR C terminal sensor domain 74 231 7.5E-51 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CS348_05850 eb0eb62a278603e2e796cab685025871 257 SUPERFAMILY SSF100950 73 234 7.95E-36 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_05850 eb0eb62a278603e2e796cab685025871 257 SUPERFAMILY SSF46785 4 61 1.63E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_05850 eb0eb62a278603e2e796cab685025871 257 SMART SM00420 6 58 6.5E-22 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05850 eb0eb62a278603e2e796cab685025871 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.3E-20 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CS348_05850 eb0eb62a278603e2e796cab685025871 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 13-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 CS348_05850 eb0eb62a278603e2e796cab685025871 257 SMART SM01134 72 233 4.3E-70 T 13-10-2018 CS348_11245 47084427366f06b619bb2bcc38652e42 14 Pfam PF08255 Trp-operon Leader Peptide 1 14 5.5E-9 T 13-10-2018 IPR013205 Leader peptide, tryptophan-operon CS348_11475 186f327754afec2ce67591651ef7f8f5 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 2.4E-44 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_11475 186f327754afec2ce67591651ef7f8f5 321 SUPERFAMILY SSF161098 70 300 1.57E-23 T 13-10-2018 IPR035906 MetI-like superfamily CS348_09255 d5b485d6ec71fe55f375b021ce0c02e6 327 Pfam PF02706 Chain length determinant protein 16 122 1.3E-23 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 CS348_09255 d5b485d6ec71fe55f375b021ce0c02e6 327 Gene3D G3DSA:3.30.1890.10 48 293 3.2E-98 T 13-10-2018 CS348_09255 d5b485d6ec71fe55f375b021ce0c02e6 327 SUPERFAMILY SSF160355 54 292 1.57E-70 T 13-10-2018 CS348_23220 3106fa6e414d53e8eadd4fb8d4e9d077 319 Pfam PF04198 Putative sugar-binding domain 66 314 1.1E-67 T 13-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 CS348_23220 3106fa6e414d53e8eadd4fb8d4e9d077 319 Gene3D G3DSA:3.40.50.1360 68 315 1.5E-81 T 13-10-2018 CS348_23220 3106fa6e414d53e8eadd4fb8d4e9d077 319 SUPERFAMILY SSF100950 66 317 5.11E-56 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CS348_23220 3106fa6e414d53e8eadd4fb8d4e9d077 319 Gene3D G3DSA:1.10.10.10 1 62 1.6E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_01235 5425772ce4d66af02a12ed7f749b8d23 281 Gene3D G3DSA:3.40.1190.20 2 273 1.1E-38 T 13-10-2018 IPR029056 Ribokinase-like CS348_01235 5425772ce4d66af02a12ed7f749b8d23 281 SUPERFAMILY SSF53613 4 276 8.51E-56 T 13-10-2018 IPR029056 Ribokinase-like CS348_01235 5425772ce4d66af02a12ed7f749b8d23 281 Pfam PF00294 pfkB family carbohydrate kinase 19 272 3.5E-24 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 441 4.1E-155 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 Pfam PF01235 Sodium:alanine symporter family 54 453 3.6E-142 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 PRINTS PR00175 Sodium/alanine symporter signature 206 225 1.4E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 PRINTS PR00175 Sodium/alanine symporter signature 87 109 1.4E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 PRINTS PR00175 Sodium/alanine symporter signature 349 371 1.4E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 PRINTS PR00175 Sodium/alanine symporter signature 178 196 1.4E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 PRINTS PR00175 Sodium/alanine symporter signature 303 321 1.4E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 PRINTS PR00175 Sodium/alanine symporter signature 410 430 1.4E-48 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_20335 3f868c8ac9e27956ccffb079c426e62a 476 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CS348_11415 5478eaadeebcfbbb35614b0ecfcce4e3 235 SUPERFAMILY SSF141868 7 212 3.53E-13 T 13-10-2018 IPR035919 EAL domain superfamily CS348_11415 5478eaadeebcfbbb35614b0ecfcce4e3 235 Gene3D G3DSA:3.20.20.450 1 225 6.8E-23 T 13-10-2018 IPR035919 EAL domain superfamily CS348_11415 5478eaadeebcfbbb35614b0ecfcce4e3 235 Pfam PF00563 EAL domain 94 211 1.5E-5 T 13-10-2018 IPR001633 EAL domain CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Pfam PF02779 Transketolase, pyrimidine binding domain 591 785 2.5E-66 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_16635 11613f1c841230aaec2c5b835d800e97 933 SUPERFAMILY SSF52518 120 545 1.0E-88 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Gene3D G3DSA:3.40.50.970 167 531 1.8E-150 T 13-10-2018 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.6E-14 T 13-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 PIRSF PIRSF000157 1 932 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Gene3D G3DSA:3.40.50.11610 721 927 5.9E-176 T 13-10-2018 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 789 930 1.5E-54 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 SMART SM00861 591 784 1.7E-64 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CS348_16635 11613f1c841230aaec2c5b835d800e97 933 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 930 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Gene3D G3DSA:1.10.287.1150 84 166 1.1E-32 T 13-10-2018 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Pfam PF00676 Dehydrogenase E1 component 218 511 6.5E-48 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 Gene3D G3DSA:3.40.50.12470 554 800 5.9E-176 T 13-10-2018 CS348_16635 11613f1c841230aaec2c5b835d800e97 933 SUPERFAMILY SSF52518 575 791 3.43E-52 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CS348_16085 67fdd224687be3a82140fc6e5c1a1267 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 2.6E-42 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16085 67fdd224687be3a82140fc6e5c1a1267 306 SUPERFAMILY SSF161098 90 288 9.55E-22 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16085 67fdd224687be3a82140fc6e5c1a1267 306 Gene3D G3DSA:1.10.3720.10 88 300 1.4E-25 T 13-10-2018 IPR035906 MetI-like superfamily CS348_19875 92cc08565b03f2a2e54d2e8eb77ceb38 786 Pfam PF04453 Organic solvent tolerance protein 309 699 1.3E-111 T 13-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 CS348_19875 92cc08565b03f2a2e54d2e8eb77ceb38 786 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 765 20.66 T 13-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 CS348_19875 92cc08565b03f2a2e54d2e8eb77ceb38 786 Gene3D G3DSA:2.60.450.10 45 130 3.3E-7 T 13-10-2018 CS348_19875 92cc08565b03f2a2e54d2e8eb77ceb38 786 Pfam PF03968 OstA-like protein 53 194 9.1E-29 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal CS348_04460 de218f103738d397e558cb81518044c3 326 Gene3D G3DSA:3.30.450.90 1 97 1.2E-16 T 13-10-2018 CS348_04460 de218f103738d397e558cb81518044c3 326 SUPERFAMILY SSF52540 4 325 6.58E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_04460 de218f103738d397e558cb81518044c3 326 SMART SM00382 119 271 6.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_04460 de218f103738d397e558cb81518044c3 326 Gene3D G3DSA:3.40.50.300 99 326 1.8E-84 T 13-10-2018 CS348_04460 de218f103738d397e558cb81518044c3 326 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 190 204 - T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_04460 de218f103738d397e558cb81518044c3 326 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 2 324 7.8E-129 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 CS348_04460 de218f103738d397e558cb81518044c3 326 Pfam PF00437 Type II/IV secretion system protein 118 260 3.2E-40 T 13-10-2018 IPR001482 Type II/IV secretion system protein CS348_05660 9d40def3eab8a485539265114ed1c8b6 80 SUPERFAMILY SSF140129 3 75 4.97E-24 T 13-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 CS348_05660 9d40def3eab8a485539265114ed1c8b6 80 Gene3D G3DSA:1.20.58.90 5 74 1.8E-34 T 13-10-2018 CS348_05660 9d40def3eab8a485539265114ed1c8b6 80 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 9 79 1.6E-26 T 13-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 CS348_05660 9d40def3eab8a485539265114ed1c8b6 80 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 8 79 1.3E-19 T 13-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 CS348_03815 c5053980dbe677ffcb33e4b90669aecf 332 Pfam PF04754 Putative transposase, YhgA-like 12 212 7.2E-76 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_03815 c5053980dbe677ffcb33e4b90669aecf 332 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 12 276 5.0E-36 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_11870 2475a174145855a63fb9effe4f5c0a41 191 Gene3D G3DSA:2.40.128.110 24 191 4.3E-42 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CS348_11870 2475a174145855a63fb9effe4f5c0a41 191 Pfam PF04264 YceI-like domain 26 188 5.6E-34 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CS348_11870 2475a174145855a63fb9effe4f5c0a41 191 SMART SM00867 25 189 4.0E-51 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CS348_11870 2475a174145855a63fb9effe4f5c0a41 191 SUPERFAMILY SSF101874 26 191 1.24E-44 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CS348_22395 d92ab3d3add4db6a3ca790b774e2d278 439 Gene3D G3DSA:1.20.1600.10 21 418 2.9E-60 T 13-10-2018 CS348_22395 d92ab3d3add4db6a3ca790b774e2d278 439 SUPERFAMILY SSF56954 3 415 1.57E-64 T 13-10-2018 CS348_22395 d92ab3d3add4db6a3ca790b774e2d278 439 Pfam PF02321 Outer membrane efflux protein 236 416 4.9E-26 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_22395 d92ab3d3add4db6a3ca790b774e2d278 439 Pfam PF02321 Outer membrane efflux protein 28 208 1.0E-19 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_02395 ad0c3032e63fc0ecf83b0b14827fde51 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 4.9E-20 T 13-10-2018 IPR012451 Protein of unknown function DUF1656 CS348_02395 ad0c3032e63fc0ecf83b0b14827fde51 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 24.531 T 13-10-2018 IPR012451 Protein of unknown function DUF1656 CS348_18185 ff0f681d3bc1bc4b94ebb632b9f2bf09 454 Gene3D G3DSA:1.20.1250.20 3 389 1.2E-110 T 13-10-2018 CS348_18185 ff0f681d3bc1bc4b94ebb632b9f2bf09 454 Pfam PF07690 Major Facilitator Superfamily 20 266 4.8E-32 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_18185 ff0f681d3bc1bc4b94ebb632b9f2bf09 454 Gene3D G3DSA:3.30.70.100 390 454 4.1E-33 T 13-10-2018 CS348_18185 ff0f681d3bc1bc4b94ebb632b9f2bf09 454 SUPERFAMILY SSF103473 12 391 4.58E-61 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01705 96e109dac2bcacd9d288dfbdd27e7e78 198 ProSitePatterns PS00893 Nudix box signature. 91 112 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 CS348_01705 96e109dac2bcacd9d288dfbdd27e7e78 198 Pfam PF00293 NUDIX domain 58 161 2.9E-13 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CS348_01705 96e109dac2bcacd9d288dfbdd27e7e78 198 SUPERFAMILY SSF55811 14 192 7.45E-38 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CS348_01705 96e109dac2bcacd9d288dfbdd27e7e78 198 Gene3D G3DSA:3.90.79.10 19 198 5.6E-48 T 13-10-2018 CS348_06120 5727d93788e431da1a1b7e3f02cf0484 466 PIRSF PIRSF006060 1 463 2.4E-72 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_06120 5727d93788e431da1a1b7e3f02cf0484 466 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_06120 5727d93788e431da1a1b7e3f02cf0484 466 Gene3D G3DSA:1.20.1740.10 13 459 9.5E-65 T 13-10-2018 CS348_06120 5727d93788e431da1a1b7e3f02cf0484 466 Pfam PF00324 Amino acid permease 18 451 1.3E-123 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_06120 5727d93788e431da1a1b7e3f02cf0484 466 TIGRFAM TIGR01773 GABAperm: GABA permease 1 452 1.9E-248 T 13-10-2018 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 CS348_19520 f222c758c123f2661013186512dc8064 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 28.635 T 13-10-2018 IPR008249 Uncharacterised protein family UPF0231 CS348_19520 f222c758c123f2661013186512dc8064 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 4.8E-41 T 13-10-2018 IPR008249 Uncharacterised protein family UPF0231 CS348_19520 f222c758c123f2661013186512dc8064 120 PIRSF PIRSF006287 1 120 7.1E-48 T 13-10-2018 IPR008249 Uncharacterised protein family UPF0231 CS348_19520 f222c758c123f2661013186512dc8064 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 118 5.0E-63 T 13-10-2018 IPR008249 Uncharacterised protein family UPF0231 CS348_11265 36d6866e63d7906b786f1e281afb487d 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 1.1E-80 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CS348_11265 36d6866e63d7906b786f1e281afb487d 196 SUPERFAMILY SSF52540 7 196 1.14E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11265 36d6866e63d7906b786f1e281afb487d 196 Gene3D G3DSA:3.40.50.300 6 196 4.5E-75 T 13-10-2018 CS348_11265 36d6866e63d7906b786f1e281afb487d 196 PIRSF PIRSF015617 1 196 2.0E-69 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CS348_11265 36d6866e63d7906b786f1e281afb487d 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 9.9E-59 T 13-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 CS348_16695 b725971df2044a71a7d46184dc79b591 218 Gene3D G3DSA:2.40.100.10 87 217 5.8E-56 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_16695 b725971df2044a71a7d46184dc79b591 218 SMART SM00796 4 202 5.6E-99 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CS348_16695 b725971df2044a71a7d46184dc79b591 218 SUPERFAMILY SSF160467 5 92 6.93E-10 T 13-10-2018 CS348_16695 b725971df2044a71a7d46184dc79b591 218 SUPERFAMILY SSF50891 88 214 3.07E-47 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CS348_16695 b725971df2044a71a7d46184dc79b591 218 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 202 7.2E-71 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CS348_16695 b725971df2044a71a7d46184dc79b591 218 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 211 5.9E-100 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 CS348_24935 cb5df29b82dca2a4f3bf062de76f21a3 140 SUPERFAMILY SSF48695 38 130 8.89E-12 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily CS348_24935 cb5df29b82dca2a4f3bf062de76f21a3 140 Gene3D G3DSA:1.10.1130.10 39 137 8.5E-17 T 13-10-2018 CS348_24935 cb5df29b82dca2a4f3bf062de76f21a3 140 Pfam PF14537 Cytochrome c3 47 130 1.3E-16 T 13-10-2018 IPR012286 Tetrahaem cytochrome domain KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 CS348_02020 173fb2cdaacd3678a7968e3a88b6734e 100 SUPERFAMILY SSF54189 6 97 2.84E-30 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_02020 173fb2cdaacd3678a7968e3a88b6734e 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 13-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02020 173fb2cdaacd3678a7968e3a88b6734e 100 Gene3D G3DSA:3.30.70.330 1 100 2.4E-38 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CS348_02020 173fb2cdaacd3678a7968e3a88b6734e 100 Pfam PF00276 Ribosomal protein L23 9 95 5.9E-31 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CS348_02020 173fb2cdaacd3678a7968e3a88b6734e 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.535 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 Pfam PF12852 Cupin 2 161 5.3E-23 T 13-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 SUPERFAMILY SSF46689 229 279 5.38E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 SUPERFAMILY SSF46689 176 224 1.25E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 230 272 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 Pfam PF12833 Helix-turn-helix domain 199 278 2.7E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 SUPERFAMILY SSF51182 37 90 2.35E-6 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 Gene3D G3DSA:2.60.120.10 31 92 6.9E-6 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 SMART SM00342 193 276 1.2E-28 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 260 6.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 276 6.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_17395 43ef2b8c80e1b5a7db295d757db25d58 284 Gene3D G3DSA:1.10.10.60 173 281 2.6E-25 T 13-10-2018 CS348_13395 3d46ed4e516d7db55a2e4d31d2165b3b 103 Gene3D G3DSA:1.10.260.40 1 99 2.9E-35 T 13-10-2018 CS348_13395 3d46ed4e516d7db55a2e4d31d2165b3b 103 SMART SM00530 8 65 5.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_13395 3d46ed4e516d7db55a2e4d31d2165b3b 103 Pfam PF01381 Helix-turn-helix 9 52 2.5E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_13395 3d46ed4e516d7db55a2e4d31d2165b3b 103 SUPERFAMILY SSF47413 3 53 1.42E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_18985 c853e87a2998d49f5674d5d938b1cd1c 240 Gene3D G3DSA:3.40.50.150 54 185 1.0E-14 T 13-10-2018 CS348_18985 c853e87a2998d49f5674d5d938b1cd1c 240 SUPERFAMILY SSF53335 77 207 3.1E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_18985 c853e87a2998d49f5674d5d938b1cd1c 240 Pfam PF08241 Methyltransferase domain 74 125 1.2E-10 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CS348_21360 143bab40058f1825a287cfe1a20be1a2 80 Gene3D G3DSA:1.10.1220.10 1 80 5.1E-31 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CS348_21360 143bab40058f1825a287cfe1a20be1a2 80 Pfam PF04221 RelB antitoxin 1 66 1.2E-15 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ CS348_21360 143bab40058f1825a287cfe1a20be1a2 80 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 80 5.7E-23 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ CS348_15505 2e449e6473bf2c003d1c736983e6b823 322 Pfam PF04393 Protein of unknown function (DUF535) 40 316 1.6E-98 T 13-10-2018 IPR007488 Protein of unknown function DUF535 CS348_23330 1d8a6486659c4b3a89e504af6e73504a 182 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 47 181 3.9E-34 T 13-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly CS348_13955 d37f5ae983486130e171ed022fb50f11 394 Gene3D G3DSA:1.20.1250.20 203 390 9.7E-18 T 13-10-2018 CS348_13955 d37f5ae983486130e171ed022fb50f11 394 TIGRFAM TIGR00896 CynX: cyanate transporter 15 368 2.6E-139 T 13-10-2018 IPR004747 Cyanate transport system protein GO:0016021 CS348_13955 d37f5ae983486130e171ed022fb50f11 394 SUPERFAMILY SSF103473 8 389 4.45E-47 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_13955 d37f5ae983486130e171ed022fb50f11 394 Gene3D G3DSA:1.20.1250.20 12 197 5.0E-17 T 13-10-2018 CS348_13955 d37f5ae983486130e171ed022fb50f11 394 Pfam PF07690 Major Facilitator Superfamily 23 349 7.0E-22 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_21220 affa3ba60184827b3f4c735fd7f67411 160 Pfam PF04364 DNA polymerase III chi subunit, HolC 14 154 2.5E-38 T 13-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 CS348_21220 affa3ba60184827b3f4c735fd7f67411 160 Gene3D G3DSA:3.40.50.10110 11 160 4.2E-56 T 13-10-2018 IPR036768 DNA polymerase III subunit chi superfamily CS348_21220 affa3ba60184827b3f4c735fd7f67411 160 SUPERFAMILY SSF102400 14 158 7.32E-47 T 13-10-2018 IPR036768 DNA polymerase III subunit chi superfamily CS348_02585 86f5039c2f887381bd2abd957ede954f 309 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 301 3.8E-140 T 13-10-2018 IPR005911 Protein YhcC-like GO:0051536 CS348_02585 86f5039c2f887381bd2abd957ede954f 309 SUPERFAMILY SSF102114 14 255 6.15E-44 T 13-10-2018 CS348_02585 86f5039c2f887381bd2abd957ede954f 309 Gene3D G3DSA:3.80.30.20 40 236 8.0E-17 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CS348_02585 86f5039c2f887381bd2abd957ede954f 309 SMART SM00729 23 247 3.4E-41 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_02585 86f5039c2f887381bd2abd957ede954f 309 Pfam PF04055 Radical SAM superfamily 43 202 1.1E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_02585 86f5039c2f887381bd2abd957ede954f 309 Pfam PF16199 Radical_SAM C-terminal domain 208 287 5.0E-18 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 CS348_20280 23b971d7ba99c2483e93ebf9e4486252 147 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 99 7.3E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_20280 23b971d7ba99c2483e93ebf9e4486252 147 Gene3D G3DSA:1.10.10.10 7 107 4.8E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20280 23b971d7ba99c2483e93ebf9e4486252 147 SUPERFAMILY SSF46894 8 101 1.64E-6 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 260 1.8E-28 T 13-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 PIRSF PIRSF000456 5 262 3.3E-107 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 8.2E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 8.8E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 259 3.7E-111 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 Gene3D G3DSA:1.20.1180.10 197 262 7.1E-26 T 13-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 SUPERFAMILY SSF51161 2 261 4.43E-80 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 Gene3D G3DSA:2.160.10.10 1 196 1.3E-54 T 13-10-2018 CS348_19155 a6c522330fe7333a4c01aa85836bbaaf 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 48.38 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 Pfam PF00361 Proton-conducting membrane transporter 134 430 1.5E-68 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 499 1.1E-182 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 5.7E-37 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 5.7E-37 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 5.7E-37 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 5.7E-37 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08065 fc71b8ae5007d008e44db047c38e129b 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 5.7E-37 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_24730 ee0e55385a6e4c5a36079294dc69dafb 139 Pfam PF07128 Protein of unknown function (DUF1380) 1 137 5.2E-70 T 13-10-2018 IPR009811 Protein of unknown function DUF1380 CS348_19110 edcce2143f6afe788c9a206efbc5391a 86 Gene3D G3DSA:2.30.30.400 10 86 4.2E-33 T 13-10-2018 IPR038626 Rof-like superfamily CS348_19110 edcce2143f6afe788c9a206efbc5391a 86 SUPERFAMILY SSF101744 1 85 1.26E-30 T 13-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 CS348_19110 edcce2143f6afe788c9a206efbc5391a 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 4.0E-27 T 13-10-2018 IPR009778 Modulator of Rho-dependent transcription termination CS348_22660 6c70e99df517f8bb932d6923c0ea3476 543 Pfam PF02690 Na+/Pi-cotransporter 13 147 8.4E-36 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CS348_22660 6c70e99df517f8bb932d6923c0ea3476 543 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 308 7.9E-133 T 13-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 CS348_22660 6c70e99df517f8bb932d6923c0ea3476 543 SUPERFAMILY SSF109755 321 531 8.16E-24 T 13-10-2018 CS348_22660 6c70e99df517f8bb932d6923c0ea3476 543 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 520 8.6E-162 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 CS348_23725 17450fa8e9d840f030c05bc8eea0f943 341 Gene3D G3DSA:3.30.470.20 225 339 1.3E-10 T 13-10-2018 CS348_23725 17450fa8e9d840f030c05bc8eea0f943 341 SUPERFAMILY SSF56059 112 336 1.86E-16 T 13-10-2018 CS348_08675 5a289675263c5004a7dd4162abe6db7f 380 Pfam PF04235 Protein of unknown function (DUF418) 215 374 1.7E-45 T 13-10-2018 IPR007349 Domain of unknown function DUF418 CS348_12325 d9cd033700d0cfa6efb2dc4075f77155 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 134 7.6E-30 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CS348_12325 d9cd033700d0cfa6efb2dc4075f77155 341 Gene3D G3DSA:3.90.180.10 11 325 8.2E-93 T 13-10-2018 CS348_12325 d9cd033700d0cfa6efb2dc4075f77155 341 SUPERFAMILY SSF50129 4 171 8.33E-49 T 13-10-2018 IPR011032 GroES-like superfamily CS348_12325 d9cd033700d0cfa6efb2dc4075f77155 341 SUPERFAMILY SSF51735 140 288 1.01E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_12325 d9cd033700d0cfa6efb2dc4075f77155 341 Gene3D G3DSA:3.40.50.720 151 286 8.2E-93 T 13-10-2018 CS348_12325 d9cd033700d0cfa6efb2dc4075f77155 341 Pfam PF00107 Zinc-binding dehydrogenase 174 299 1.3E-25 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CS348_16360 a163c589de203ccd324004b862a8e091 385 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 CS348_16360 a163c589de203ccd324004b862a8e091 385 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 384 48.479 T 13-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 CS348_16360 a163c589de203ccd324004b862a8e091 385 Gene3D G3DSA:3.40.640.10 57 284 2.2E-139 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_16360 a163c589de203ccd324004b862a8e091 385 SUPERFAMILY SSF53383 3 380 1.34E-106 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_16360 a163c589de203ccd324004b862a8e091 385 Pfam PF00155 Aminotransferase class I and II 40 379 2.7E-63 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_16360 a163c589de203ccd324004b862a8e091 385 Gene3D G3DSA:3.90.1150.10 40 378 2.2E-139 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_16360 a163c589de203ccd324004b862a8e091 385 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 381 3.0E-143 T 13-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 CS348_03210 33e20e6440f459af07be048efac4a5df 273 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 265 8.3E-109 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CS348_03210 33e20e6440f459af07be048efac4a5df 273 Pfam PF02673 Bacitracin resistance protein BacA 10 266 1.8E-89 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CS348_03210 33e20e6440f459af07be048efac4a5df 273 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 272 18.849 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CS348_05610 3388f4cc61f206daf64b3bdffbda6e85 685 Gene3D G3DSA:1.10.4110.10 514 670 6.2E-89 T 13-10-2018 IPR023224 Salmonella invasion protein A, C-terminal actin-binding domain superfamily CS348_05610 3388f4cc61f206daf64b3bdffbda6e85 685 Pfam PF09052 Salmonella invasion protein A 1 682 0.0 T 13-10-2018 IPR015138 Salmonella invasion protein A CS348_05610 3388f4cc61f206daf64b3bdffbda6e85 685 Gene3D G3DSA:1.10.4150.10 49 263 3.5E-101 T 13-10-2018 IPR023225 Salmonella invasion protein A, chaperone-binding CS348_05610 3388f4cc61f206daf64b3bdffbda6e85 685 SUPERFAMILY SSF101312 514 658 1.05E-91 T 13-10-2018 IPR023224 Salmonella invasion protein A, C-terminal actin-binding domain superfamily CS348_05610 3388f4cc61f206daf64b3bdffbda6e85 685 SUPERFAMILY SSF140746 23 262 4.32E-111 T 13-10-2018 IPR023225 Salmonella invasion protein A, chaperone-binding CS348_17515 a5954283443d1f943ff09c430ab3ea84 91 Gene3D G3DSA:2.40.10.210 23 91 6.2E-25 T 13-10-2018 CS348_17515 a5954283443d1f943ff09c430ab3ea84 91 Pfam PF13856 ATP-binding sugar transporter from pro-phage 1 90 3.4E-12 T 13-10-2018 IPR025601 ATP-binding sugar transporter-like protein CS348_17515 a5954283443d1f943ff09c430ab3ea84 91 SUPERFAMILY SSF69279 1 91 2.21E-32 T 13-10-2018 CS348_25145 37121011180fc1b286252d59908a5443 132 Pfam PF06864 Pilin accessory protein (PilO) 17 126 1.6E-14 T 13-10-2018 IPR009663 Pilin accessory predicted CS348_04010 8cab01dfd596a0fa5cdf05b333a85458 220 Pfam PF11444 Protein of unknown function (DUF2895) 6 203 6.9E-84 T 13-10-2018 IPR021548 Protein of unknown function DUF2895 CS348_04010 8cab01dfd596a0fa5cdf05b333a85458 220 TIGRFAM TIGR03746 conj_TIGR03746: integrating conjugative element protein, PFL_4703 family 4 204 5.9E-93 T 13-10-2018 IPR021548 Protein of unknown function DUF2895 CS348_01995 9bbee4c6e88bee84f0c9040d9e24e9f1 155 Pfam PF01478 Type IV leader peptidase family 10 113 2.4E-22 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CS348_01995 9bbee4c6e88bee84f0c9040d9e24e9f1 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 86 97 6.2E-17 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CS348_01995 9bbee4c6e88bee84f0c9040d9e24e9f1 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 75 85 6.2E-17 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CS348_01995 9bbee4c6e88bee84f0c9040d9e24e9f1 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 18 35 6.2E-17 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CS348_01995 9bbee4c6e88bee84f0c9040d9e24e9f1 155 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 98 113 6.2E-17 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CS348_09750 00798fe4b9dad602a6a1e53f2bcaf955 139 Pfam PF00717 Peptidase S24-like 57 119 2.2E-13 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CS348_09750 00798fe4b9dad602a6a1e53f2bcaf955 139 SUPERFAMILY SSF51306 13 135 6.1E-35 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CS348_09750 00798fe4b9dad602a6a1e53f2bcaf955 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 52 62 4.4E-12 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_09750 00798fe4b9dad602a6a1e53f2bcaf955 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 63 74 4.4E-12 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_09750 00798fe4b9dad602a6a1e53f2bcaf955 139 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 91 103 4.4E-12 T 13-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 CS348_09750 00798fe4b9dad602a6a1e53f2bcaf955 139 Gene3D G3DSA:2.10.109.10 25 139 2.5E-50 T 13-10-2018 CS348_07080 e7eed06c3b96c37ec0aca7a363327205 208 Gene3D G3DSA:3.40.50.2020 1 208 4.7E-73 T 13-10-2018 CS348_07080 e7eed06c3b96c37ec0aca7a363327205 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.573 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CS348_07080 e7eed06c3b96c37ec0aca7a363327205 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 8.9E-65 T 13-10-2018 CS348_07080 e7eed06c3b96c37ec0aca7a363327205 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 6.8E-90 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CS348_07080 e7eed06c3b96c37ec0aca7a363327205 208 SUPERFAMILY SSF53271 4 206 4.59E-66 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 SUPERFAMILY SSF53850 88 289 1.18E-32 T 13-10-2018 CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 Gene3D G3DSA:1.10.10.10 1 82 1.7E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 5.1E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 Pfam PF03466 LysR substrate binding domain 87 285 3.2E-31 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 SUPERFAMILY SSF46785 1 86 1.92E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_06675 22c47a9612756c6b30cda0de81de9c9f 308 Gene3D G3DSA:3.40.190.290 90 292 3.0E-36 T 13-10-2018 CS348_18870 a2ecf3f2561ff04f7211957a10177073 249 Pfam PF14301 Domain of unknown function (DUF4376) 127 231 1.3E-17 T 13-10-2018 IPR025484 Domain of unknown function DUF4376 CS348_20245 227412ace06f61130fd8ef3223fa7559 335 Gene3D G3DSA:2.60.40.1090 199 335 2.3E-20 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_20245 227412ace06f61130fd8ef3223fa7559 335 Pfam PF00419 Fimbrial protein 188 334 2.7E-28 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_20245 227412ace06f61130fd8ef3223fa7559 335 SUPERFAMILY SSF49401 196 334 1.29E-16 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_04670 127653a4bf90f64d1f2889c1ed87a9eb 194 Pfam PF03695 Uncharacterised protein family (UPF0149) 14 179 1.3E-39 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CS348_04670 127653a4bf90f64d1f2889c1ed87a9eb 194 Gene3D G3DSA:1.20.120.740 7 194 5.3E-58 T 13-10-2018 CS348_04670 127653a4bf90f64d1f2889c1ed87a9eb 194 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 8 192 37.395 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CS348_04670 127653a4bf90f64d1f2889c1ed87a9eb 194 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 14 168 6.4E-13 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CS348_04670 127653a4bf90f64d1f2889c1ed87a9eb 194 SUPERFAMILY SSF101327 9 178 5.36E-53 T 13-10-2018 IPR036255 YgfB-like superfamily CS348_02700 a335851e37411d5c0811869981b5dabf 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 1.9E-130 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CS348_02700 a335851e37411d5c0811869981b5dabf 419 SUPERFAMILY SSF55205 1 418 1.31E-146 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CS348_02700 a335851e37411d5c0811869981b5dabf 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 6.5E-185 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_02700 a335851e37411d5c0811869981b5dabf 419 Gene3D G3DSA:3.65.10.10 21 228 2.6E-176 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CS348_02700 a335851e37411d5c0811869981b5dabf 419 Gene3D G3DSA:3.65.10.10 7 413 2.6E-176 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CS348_02700 a335851e37411d5c0811869981b5dabf 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 44.263 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CS348_23455 59c2a6e62bae1926908956ac1132330a 100 ProDom PD067735 GP81 ORF2 GPA 5'REGION ORF81 1 99 3.0E-40 T 13-10-2018 CS348_23455 59c2a6e62bae1926908956ac1132330a 100 Pfam PF17399 Domain of unknown function (DUF5405) 10 95 4.0E-29 T 13-10-2018 IPR035404 Domain of unknown function DUF5405 CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 Gene3D G3DSA:3.40.50.1110 224 354 3.8E-25 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 Gene3D G3DSA:3.40.50.1110 20 203 4.2E-30 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 SUPERFAMILY SSF103515 341 656 5.75E-38 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 PIRSF PIRSF037375 2 656 9.8E-220 T 13-10-2018 IPR017186 Lipase, autotransporter EstA CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 SUPERFAMILY SSF52266 29 346 6.91E-8 T 13-10-2018 CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 Gene3D G3DSA:2.40.128.130 356 656 1.3E-49 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 SMART SM00869 386 645 1.2E-25 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 30 342 1.0E-6 T 13-10-2018 IPR001087 GDSL lipase/esterase GO:0016788 CS348_17360 d68042fdc18815258fdf71ea20cb5d56 656 Pfam PF03797 Autotransporter beta-domain 390 634 4.9E-36 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_18745 37fe91ee0ee1dd5665875a1cfbf9199e 414 Gene3D G3DSA:3.40.50.1820 16 414 1.8E-112 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_18745 37fe91ee0ee1dd5665875a1cfbf9199e 414 Hamap MF_01063 Esterase FrsA [frsA]. 1 414 61.052 T 13-10-2018 IPR010520 UPF0255 family CS348_18745 37fe91ee0ee1dd5665875a1cfbf9199e 414 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 4.1E-213 T 13-10-2018 IPR010520 UPF0255 family CS348_18745 37fe91ee0ee1dd5665875a1cfbf9199e 414 SUPERFAMILY SSF53474 46 413 5.56E-54 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_21680 53962b6208161b0b84438092aba9d111 228 Hamap MF_01952 L-ribulose-5-phosphate 4-epimerase UlaF [ulaF]. 1 228 66.46 T 13-10-2018 IPR023499 L-ribulose-5-phosphate 4-epimerase UlaF GO:0008742 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 CS348_21680 53962b6208161b0b84438092aba9d111 228 SUPERFAMILY SSF53639 2 219 1.12E-69 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_21680 53962b6208161b0b84438092aba9d111 228 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 193 3.3E-47 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_21680 53962b6208161b0b84438092aba9d111 228 Gene3D G3DSA:3.40.225.10 1 227 4.0E-62 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_21680 53962b6208161b0b84438092aba9d111 228 SMART SM01007 6 194 2.3E-68 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_03865 f8c1f48e29377f44be433e0764731e37 149 Pfam PF01464 Transglycosylase SLT domain 15 140 1.6E-23 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_03865 f8c1f48e29377f44be433e0764731e37 149 SUPERFAMILY SSF53955 5 144 5.63E-33 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_03865 f8c1f48e29377f44be433e0764731e37 149 Gene3D G3DSA:1.10.530.10 14 149 4.8E-17 T 13-10-2018 CS348_08975 daf80b1396dfa6cfffc4dcd2944fab65 703 Pfam PF13226 Domain of unknown function (DUF4034) 30 306 4.6E-108 T 13-10-2018 IPR025115 Domain of unknown function DUF4034 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 218 1.1E-100 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 188 201 - T 13-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 16 218 38.499 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 178 218 8.9E-19 T 13-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 41 122 1.2E-24 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 SUPERFAMILY SSF50475 21 218 1.87E-67 T 13-10-2018 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 PIRSF PIRSF000190 1 218 3.4E-85 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CS348_12825 5e6bcedfc72a2764b7414fdf29cff7c8 218 Gene3D G3DSA:2.30.110.10 20 218 2.3E-78 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CS348_11830 78f9143afec6315ee38443c95aea4402 91 Gene3D G3DSA:1.20.58.1000 1 91 3.8E-35 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily CS348_11830 78f9143afec6315ee38443c95aea4402 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 82 2.9E-20 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CS348_08530 f5617b0b58226313b897c8d937d9a75b 601 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 98 503 2.9E-68 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_08530 f5617b0b58226313b897c8d937d9a75b 601 Gene3D G3DSA:3.40.190.10 27 587 1.7E-217 T 13-10-2018 CS348_08530 f5617b0b58226313b897c8d937d9a75b 601 SUPERFAMILY SSF53850 49 590 8.51E-108 T 13-10-2018 CS348_08530 f5617b0b58226313b897c8d937d9a75b 601 PIRSF PIRSF002741 3 592 1.1E-166 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CS348_08530 f5617b0b58226313b897c8d937d9a75b 601 Gene3D G3DSA:3.10.105.10 309 567 1.7E-217 T 13-10-2018 CS348_00275 f16468d1db630491b36352a7bd6ee59a 157 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 18 147 3.3E-31 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_00275 f16468d1db630491b36352a7bd6ee59a 157 Gene3D G3DSA:3.40.930.10 1 19 1.2E-5 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_00275 f16468d1db630491b36352a7bd6ee59a 157 Gene3D G3DSA:3.40.930.10 20 157 3.3E-55 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_00275 f16468d1db630491b36352a7bd6ee59a 157 SUPERFAMILY SSF55804 6 147 1.31E-35 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_02540 72a9550bb1db44a880c24a2a581944bc 229 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 11 225 37.115 T 13-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 CS348_02540 72a9550bb1db44a880c24a2a581944bc 229 Gene3D G3DSA:3.20.20.70 1 229 1.2E-95 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_02540 72a9550bb1db44a880c24a2a581944bc 229 SUPERFAMILY SSF51366 14 224 9.73E-54 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CS348_02540 72a9550bb1db44a880c24a2a581944bc 229 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 35 226 4.7E-86 T 13-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 CS348_10650 ca89598f65d765b8c4bc4e80b687499c 152 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 31.731 T 13-10-2018 IPR009328 Protein of unknown function DUF986 CS348_10650 ca89598f65d765b8c4bc4e80b687499c 152 PIRSF PIRSF020687 1 152 8.4E-68 T 13-10-2018 IPR009328 Protein of unknown function DUF986 CS348_10650 ca89598f65d765b8c4bc4e80b687499c 152 Pfam PF06173 Protein of unknown function (DUF986) 4 151 1.7E-62 T 13-10-2018 IPR009328 Protein of unknown function DUF986 CS348_10650 ca89598f65d765b8c4bc4e80b687499c 152 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 22 148 6.0E-69 T 13-10-2018 IPR009328 Protein of unknown function DUF986 CS348_21555 6ed029127a55fbefcd9b6dd6c0de32a5 1259 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 923 1259 1.4E-70 T 13-10-2018 IPR007452 Translocation and assembly module TamB CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 281 5.1E-152 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 249 258 4.7E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 227 238 4.7E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 127 141 4.7E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 161 179 4.7E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 198 215 4.7E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 SUPERFAMILY SSF52096 23 284 6.53E-92 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 Pfam PF01039 Carboxyl transferase domain 57 240 1.2E-18 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 Gene3D G3DSA:3.90.226.10 23 285 2.1E-91 T 13-10-2018 CS348_07805 ca7e352daff13840f2301a48e9ec8a13 304 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 279 39.263 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CS348_07400 0eb598ec74438087163fc27017f28d66 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 4.5E-51 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CS348_07400 0eb598ec74438087163fc27017f28d66 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CS348_07400 0eb598ec74438087163fc27017f28d66 169 Gene3D G3DSA:2.70.70.10 9 169 2.2E-64 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_07400 0eb598ec74438087163fc27017f28d66 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 1.7E-49 T 13-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 CS348_07400 0eb598ec74438087163fc27017f28d66 169 SUPERFAMILY SSF51261 12 167 2.09E-56 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_12440 9528a3f442090fbf6fa9c6bab5a0346b 71 Pfam PF13999 MarB protein 7 69 5.3E-31 T 13-10-2018 IPR025732 MarB protein CS348_12440 9528a3f442090fbf6fa9c6bab5a0346b 71 ProDom PD027692 ANTIBIOTIC RESISTANCE MULTIPLE MARB 1 71 4.0E-9 T 13-10-2018 IPR025732 MarB protein CS348_12285 eaf7e8f9de7270c351aaa9f1767fddb6 94 SUPERFAMILY SSF143011 1 83 8.76E-23 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CS348_12285 eaf7e8f9de7270c351aaa9f1767fddb6 94 Gene3D G3DSA:3.30.2310.20 1 94 8.8E-27 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CS348_12285 eaf7e8f9de7270c351aaa9f1767fddb6 94 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 81 9.4E-10 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CS348_12285 eaf7e8f9de7270c351aaa9f1767fddb6 94 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 6 84 4.9E-13 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CS348_20945 278b44c37e1ca32e4c93843a84cbf71f 278 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 16 278 3.9E-105 T 13-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 CS348_14895 eca258a744689575cf9d2d15dc2e642e 413 SUPERFAMILY SSF53254 25 410 4.04E-77 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_14895 eca258a744689575cf9d2d15dc2e642e 413 Gene3D G3DSA:3.40.50.1240 44 274 7.2E-152 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_14895 eca258a744689575cf9d2d15dc2e642e 413 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 31 363 1.0E-15 T 13-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 CS348_14895 eca258a744689575cf9d2d15dc2e642e 413 ProSitePatterns PS00778 Histidine acid phosphatases active site signature. 305 321 - T 13-10-2018 IPR033379 Histidine acid phosphatase active site CS348_14895 eca258a744689575cf9d2d15dc2e642e 413 Gene3D G3DSA:3.40.50.1240 29 404 7.2E-152 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CS348_14895 eca258a744689575cf9d2d15dc2e642e 413 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 31 45 - T 13-10-2018 IPR033379 Histidine acid phosphatase active site CS348_17475 51dcb767a1addc91d8b63873c0d180e4 232 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 12 230 1.4E-95 T 13-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail CS348_17475 51dcb767a1addc91d8b63873c0d180e4 232 Pfam PF05100 Phage minor tail protein L 29 230 1.1E-87 T 13-10-2018 IPR006487 Bacteriophage lambda, GpL, minor tail CS348_13505 e8a22fcbd631474279bab514ad5204ba 276 Pfam PF05944 Phage small terminase subunit 36 169 6.8E-35 T 13-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 CS348_05700 1c15d15a9cfac4a7401ef244a9ef06d7 251 SUPERFAMILY SSF46894 155 211 4.08E-6 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_00815 063bfbe93a966fae246ec0cd5bb42e23 651 SUPERFAMILY SSF48208 15 426 2.58E-39 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CS348_00815 063bfbe93a966fae246ec0cd5bb42e23 651 Pfam PF07944 Beta-L-arabinofuranosidase, GH127 12 560 1.5E-169 T 13-10-2018 IPR012878 Beta-L-arabinofuranosidase, GH127 CS348_21650 4d776f2becc435db4210658806b3f9df 75 Pfam PF01084 Ribosomal protein S18 19 68 9.1E-25 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 3.0E-22 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 13-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 Gene3D G3DSA:4.10.640.10 20 75 4.2E-29 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 SUPERFAMILY SSF46911 3 74 7.06E-29 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 8.1E-38 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_21650 4d776f2becc435db4210658806b3f9df 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.313 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_20390 9b17c984ddf2f79e9f58c60de0cd247e 181 Pfam PF00419 Fimbrial protein 26 181 9.5E-15 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_20390 9b17c984ddf2f79e9f58c60de0cd247e 181 Gene3D G3DSA:2.60.40.1090 22 181 5.1E-31 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_20390 9b17c984ddf2f79e9f58c60de0cd247e 181 SUPERFAMILY SSF49401 25 181 2.58E-27 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_00520 5af2b500c3722c93aaec6b063ae6052b 205 Pfam PF03458 UPF0126 domain 5 79 1.1E-18 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 CS348_00520 5af2b500c3722c93aaec6b063ae6052b 205 Pfam PF03458 UPF0126 domain 91 164 1.7E-21 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 CS348_17530 475a3ec1a029db1c0f5166f6819d76ca 511 Pfam PF05136 Phage portal protein, lambda family 35 371 4.1E-86 T 13-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 CS348_17530 475a3ec1a029db1c0f5166f6819d76ca 511 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 30 475 2.1E-190 T 13-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 CS348_09605 d186f9576b7627366cab0d7ab99028fe 460 Gene3D G3DSA:3.90.105.10 410 459 2.0E-11 T 13-10-2018 CS348_09605 d186f9576b7627366cab0d7ab99028fe 460 SUPERFAMILY SSF53383 48 409 4.7E-52 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_09605 d186f9576b7627366cab0d7ab99028fe 460 SUPERFAMILY SSF55904 415 454 1.44E-7 T 13-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 CS348_09605 d186f9576b7627366cab0d7ab99028fe 460 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 63 390 1.5E-42 T 13-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 CS348_09605 d186f9576b7627366cab0d7ab99028fe 460 Gene3D G3DSA:3.40.640.10 12 304 2.0E-66 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 Pfam PF12913 SH3 domain (SH3b1 type) 179 231 3.9E-23 T 13-10-2018 IPR039439 SH3b1 domain CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 Pfam PF12912 NLPC_P60 stabilising domain, N term 10 149 4.7E-11 T 13-10-2018 IPR025606 NLPC/P60, N-terminal domain CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 Pfam PF12914 SH3 domain of SH3b2 type 239 285 1.1E-10 T 13-10-2018 IPR026864 SH3b2-type SH3 domain CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 SUPERFAMILY SSF54001 316 423 2.06E-12 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 Gene3D G3DSA:3.90.1720.10 311 465 3.2E-33 T 13-10-2018 CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 Pfam PF00877 NlpC/P60 family 336 420 1.5E-5 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CS348_10035 bd5dd854177f39c484c584d304e0bfde 479 PIRSF PIRSF019015 30 479 4.0E-143 T 13-10-2018 IPR027017 Uncharacterised peptidase with NlpC/P60 domain, YkfC type CS348_14570 3dff834010b0f10b96891e45be496590 134 Pfam PF00460 Flagella basal body rod protein 7 37 1.3E-10 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 CS348_14570 3dff834010b0f10b96891e45be496590 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 131 2.4E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CS348_14570 3dff834010b0f10b96891e45be496590 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site CS348_14570 3dff834010b0f10b96891e45be496590 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 3.1E-51 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 CS348_10125 7f36876bab046f33cc589e61f46e6261 309 Gene3D G3DSA:3.30.1330.60 108 295 1.2E-71 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_10125 7f36876bab046f33cc589e61f46e6261 309 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 13 66 2.4E-20 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain CS348_10125 7f36876bab046f33cc589e61f46e6261 309 Pfam PF00691 OmpA family 161 258 2.5E-13 T 13-10-2018 IPR006665 OmpA-like domain CS348_10125 7f36876bab046f33cc589e61f46e6261 309 SUPERFAMILY SSF103088 157 265 2.62E-19 T 13-10-2018 IPR036737 OmpA-like domain superfamily CS348_22525 518e3a2076ff42b5200a9755b95c347d 290 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 11 287 3.6E-110 T 13-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 CS348_22525 518e3a2076ff42b5200a9755b95c347d 290 Pfam PF01040 UbiA prenyltransferase family 28 271 9.9E-68 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CS348_22525 518e3a2076ff42b5200a9755b95c347d 290 Gene3D G3DSA:1.10.357.140 23 183 3.1E-38 T 13-10-2018 CS348_22525 518e3a2076ff42b5200a9755b95c347d 290 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 13-10-2018 IPR030470 UbiA prenyltransferase conserved site CS348_22525 518e3a2076ff42b5200a9755b95c347d 290 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.385 T 13-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 6.8E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 6.8E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 6.8E-14 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 SUPERFAMILY SSF52172 3 133 1.71E-28 T 13-10-2018 IPR011006 CheY-like superfamily CS348_17695 807726aaf828f30bbd879ba5327f8058 210 SUPERFAMILY SSF46894 145 209 7.82E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 Pfam PF00072 Response regulator receiver domain 6 117 3.5E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 204 2.6E-24 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 SMART SM00448 4 117 1.0E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 SMART SM00421 147 204 1.8E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17695 807726aaf828f30bbd879ba5327f8058 210 Gene3D G3DSA:3.40.50.12740 5 210 5.5E-52 T 13-10-2018 CS348_17705 964d0788b08f553d266ffaaf0785c1c0 335 Gene3D G3DSA:2.60.40.1090 199 335 1.2E-17 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_17705 964d0788b08f553d266ffaaf0785c1c0 335 SUPERFAMILY SSF49401 196 335 6.46E-14 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_17705 964d0788b08f553d266ffaaf0785c1c0 335 Pfam PF00419 Fimbrial protein 188 334 1.4E-19 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_14740 7a5f991a7fc61d110e0e81a6d03c4e75 151 Pfam PF07012 Curlin associated repeat 86 119 2.8E-8 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_14740 7a5f991a7fc61d110e0e81a6d03c4e75 151 Pfam PF07012 Curlin associated repeat 40 74 3.1E-6 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_14740 7a5f991a7fc61d110e0e81a6d03c4e75 151 Pfam PF07012 Curlin associated repeat 67 96 4.6E-5 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_14740 7a5f991a7fc61d110e0e81a6d03c4e75 151 Pfam PF07012 Curlin associated repeat 110 141 3.4E-6 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_14890 5d4d9b199e109248f0ff2f23a1ceedba 75 Pfam PF13993 YccJ-like protein 9 75 1.5E-37 T 13-10-2018 IPR025600 YccJ-like protein CS348_17600 7d927bf268cfa2bc47a9a0474b7fb523 713 Pfam PF06048 Domain of unknown function (DUF927) 157 437 2.4E-57 T 13-10-2018 IPR009270 Domain of unknown function DUF927 CS348_23320 2320e1e0723ae37e3c20c0f90f0056b1 172 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 172 3.4E-51 T 13-10-2018 IPR006498 Tail tube protein CS348_23320 2320e1e0723ae37e3c20c0f90f0056b1 172 Pfam PF04985 Phage tail tube protein FII 4 171 5.3E-63 T 13-10-2018 IPR006498 Tail tube protein CS348_03245 9c9b56885343c94d2be8219fbc70873b 559 Pfam PF01145 SPFH domain / Band 7 family 39 215 2.6E-18 T 13-10-2018 IPR001107 Band 7 domain CS348_03245 9c9b56885343c94d2be8219fbc70873b 559 SUPERFAMILY SSF117892 61 202 4.45E-23 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CS348_03245 9c9b56885343c94d2be8219fbc70873b 559 SMART SM00244 30 199 2.0E-24 T 13-10-2018 IPR001107 Band 7 domain CS348_03245 9c9b56885343c94d2be8219fbc70873b 559 Pfam PF15975 Flotillin 406 530 6.3E-37 T 13-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 CS348_03245 9c9b56885343c94d2be8219fbc70873b 559 Gene3D G3DSA:3.30.479.30 70 189 9.1E-26 T 13-10-2018 CS348_00545 9f2731dad137c876df344adea72f7e7f 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.4E-24 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_00545 9f2731dad137c876df344adea72f7e7f 238 Gene3D G3DSA:3.30.230.70 10 238 8.6E-65 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_00545 9f2731dad137c876df344adea72f7e7f 238 SUPERFAMILY SSF55666 153 237 3.01E-26 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_00545 9f2731dad137c876df344adea72f7e7f 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 1.5E-114 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 CS348_00545 9f2731dad137c876df344adea72f7e7f 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 13-10-2018 IPR018336 Ribonuclease PH, conserved site CS348_00545 9f2731dad137c876df344adea72f7e7f 238 Pfam PF03725 3' exoribonuclease family, domain 2 157 222 1.7E-12 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CS348_00545 9f2731dad137c876df344adea72f7e7f 238 SUPERFAMILY SSF54211 1 181 7.59E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CS348_00545 9f2731dad137c876df344adea72f7e7f 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.728 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 CS348_12650 214ec0a57794aa32f7c0abf8f809adce 344 Pfam PF01594 AI-2E family transporter 14 328 1.6E-72 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CS348_17225 e9fcd5b2f73b3131b1a895785f8d3615 205 Pfam PF02195 ParB-like nuclease domain 48 141 1.6E-16 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_17225 e9fcd5b2f73b3131b1a895785f8d3615 205 Gene3D G3DSA:3.90.1530.10 39 115 3.8E-5 T 13-10-2018 CS348_17225 e9fcd5b2f73b3131b1a895785f8d3615 205 SUPERFAMILY SSF110849 45 175 2.09E-27 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_17225 e9fcd5b2f73b3131b1a895785f8d3615 205 SMART SM00470 47 142 5.2E-11 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_01535 fb868cdff354c8db6a22bfe5a5409ac9 446 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 4 444 1.3E-177 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_01535 fb868cdff354c8db6a22bfe5a5409ac9 446 PIRSF PIRSF002746 1 446 1.5E-156 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_01535 fb868cdff354c8db6a22bfe5a5409ac9 446 Pfam PF02447 GntP family permease 5 441 4.8E-168 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_04085 33a798e1483d9b624dc4e4787e345a07 114 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 99 2.6E-9 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CS348_04085 33a798e1483d9b624dc4e4787e345a07 114 SUPERFAMILY SSF52402 17 91 3.09E-18 T 13-10-2018 CS348_04085 33a798e1483d9b624dc4e4787e345a07 114 Gene3D G3DSA:3.40.50.620 14 113 1.7E-18 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CS348_10120 2ce35cd9f69cc5a9241090973d81987b 295 Pfam PF01618 MotA/TolQ/ExbB proton channel family 140 239 1.9E-11 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CS348_10120 2ce35cd9f69cc5a9241090973d81987b 295 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 4.0E-117 T 13-10-2018 IPR022522 Flagellar motor stator, MotA CS348_10120 2ce35cd9f69cc5a9241090973d81987b 295 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 13-10-2018 IPR000540 Flagellar motor protein MotA, conserved site CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 SUPERFAMILY SSF54913 1 112 6.67E-42 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 Gene3D G3DSA:3.30.70.120 1 112 4.8E-44 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 PRINTS PR00340 P-II protein signature 2 17 6.0E-40 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 PRINTS PR00340 P-II protein signature 52 75 6.0E-40 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 PRINTS PR00340 P-II protein signature 83 103 6.0E-40 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 PRINTS PR00340 P-II protein signature 23 41 6.0E-40 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 SMART SM00938 4 105 3.5E-60 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 PIRSF PIRSF039144 1 112 2.5E-52 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 5.6E-41 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CS348_18055 972cc460ed5c34e202cb0c68ede0e63a 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 13-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 CS348_10080 535d0857da929318f7bb98e6a274a52b 185 SUPERFAMILY SSF52317 1 183 3.44E-44 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_10080 535d0857da929318f7bb98e6a274a52b 185 Gene3D G3DSA:3.40.50.880 1 185 1.1E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_10080 535d0857da929318f7bb98e6a274a52b 185 Pfam PF01965 DJ-1/PfpI family 2 164 1.1E-32 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CS348_15725 e1536f83beeb0e563a54273f77630e46 114 Pfam PF05106 Phage holin family (Lysis protein S) 6 105 1.6E-32 T 13-10-2018 IPR006481 Bacteriophage lambda, GpS, holin CS348_15725 e1536f83beeb0e563a54273f77630e46 114 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 2 107 1.5E-28 T 13-10-2018 IPR006481 Bacteriophage lambda, GpS, holin CS348_20165 6b9850fd240d0aab15dba3a756c89799 388 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 4 386 23.918 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 CS348_20165 6b9850fd240d0aab15dba3a756c89799 388 Gene3D G3DSA:1.20.1530.10 1 387 7.7E-165 T 13-10-2018 IPR023171 Na/H antiporter domain superfamily CS348_20165 6b9850fd240d0aab15dba3a756c89799 388 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 7 380 4.4E-198 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 CS348_20165 6b9850fd240d0aab15dba3a756c89799 388 Pfam PF06965 Na+/H+ antiporter 1 6 380 5.5E-151 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 CS348_05405 81d68a3512053abc9f109af213251f45 377 Pfam PF01551 Peptidase family M23 277 370 1.2E-31 T 13-10-2018 IPR016047 Peptidase M23 CS348_05405 81d68a3512053abc9f109af213251f45 377 Gene3D G3DSA:2.70.70.10 214 377 3.4E-39 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_05405 81d68a3512053abc9f109af213251f45 377 Pfam PF01476 LysM domain 121 163 8.5E-11 T 13-10-2018 IPR018392 LysM domain CS348_05405 81d68a3512053abc9f109af213251f45 377 Gene3D G3DSA:3.10.350.10 114 173 6.0E-11 T 13-10-2018 IPR036779 LysM domain superfamily CS348_05405 81d68a3512053abc9f109af213251f45 377 SMART SM00257 120 164 1.7E-11 T 13-10-2018 IPR018392 LysM domain CS348_05405 81d68a3512053abc9f109af213251f45 377 SUPERFAMILY SSF51261 120 374 4.92E-54 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_03720 571592777af577a138996c5e2c45adb0 175 Pfam PF01575 MaoC like domain 29 137 1.1E-19 T 13-10-2018 IPR002539 MaoC-like dehydratase domain CS348_03720 571592777af577a138996c5e2c45adb0 175 SUPERFAMILY SSF54637 16 164 1.12E-46 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_03720 571592777af577a138996c5e2c45adb0 175 Gene3D G3DSA:3.10.129.10 13 165 2.2E-49 T 13-10-2018 CS348_04240 625ef3b24f5a230248c5e0fcadd5699d 207 Pfam PF11140 Protein of unknown function (DUF2913) 5 180 7.8E-22 T 13-10-2018 IPR021316 Protein of unknown function DUF2913 CS348_05365 fee99ee2189e4f34f8280f9bee46a12a 201 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 10 193 3.7E-86 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CS348_05365 fee99ee2189e4f34f8280f9bee46a12a 201 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 26 197 38.453 T 13-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 CS348_05365 fee99ee2189e4f34f8280f9bee46a12a 201 Gene3D G3DSA:3.40.50.300 5 201 2.5E-77 T 13-10-2018 CS348_05365 fee99ee2189e4f34f8280f9bee46a12a 201 Pfam PF01583 Adenylylsulphate kinase 27 179 1.4E-71 T 13-10-2018 CS348_05365 fee99ee2189e4f34f8280f9bee46a12a 201 SUPERFAMILY SSF52540 23 196 2.72E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_04185 6358d5998904554ebb721112d35df508 108 Gene3D G3DSA:2.40.128.380 1 107 1.9E-39 T 13-10-2018 CS348_04185 6358d5998904554ebb721112d35df508 108 Pfam PF16518 T3SS negative regulator,GrlR 1 104 3.2E-20 T 13-10-2018 IPR032417 T3SS negative regulator GrlR CS348_23625 998acbe310b310748cf1dbe4fd55fdc7 84 SUPERFAMILY SSF47413 24 77 7.78E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_23625 998acbe310b310748cf1dbe4fd55fdc7 84 Gene3D G3DSA:1.10.260.40 24 84 2.3E-21 T 13-10-2018 CS348_23625 998acbe310b310748cf1dbe4fd55fdc7 84 Pfam PF13560 Helix-turn-helix domain 25 70 1.4E-8 T 13-10-2018 CS348_23625 998acbe310b310748cf1dbe4fd55fdc7 84 SMART SM00530 24 78 1.5E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_19100 c4aa56e23f2cd9612ee140aabd318931 181 Gene3D G3DSA:3.10.640.10 1 181 2.8E-78 T 13-10-2018 IPR038590 YaeQ superfamily CS348_19100 c4aa56e23f2cd9612ee140aabd318931 181 PIRSF PIRSF011484 1 180 5.9E-64 T 13-10-2018 IPR009822 YaeQ CS348_19100 c4aa56e23f2cd9612ee140aabd318931 181 SUPERFAMILY SSF52980 4 178 1.9E-68 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_19100 c4aa56e23f2cd9612ee140aabd318931 181 Pfam PF07152 YaeQ protein 1 173 1.2E-70 T 13-10-2018 IPR009822 YaeQ CS348_19100 c4aa56e23f2cd9612ee140aabd318931 181 SMART SM01322 1 176 3.6E-109 T 13-10-2018 IPR009822 YaeQ CS348_06055 115c16c34f4a09f76871679619facb06 116 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 8.2E-59 T 13-10-2018 IPR018994 Protein of unknown function DUF2002 CS348_06055 115c16c34f4a09f76871679619facb06 116 SUPERFAMILY SSF159894 1 111 2.09E-59 T 13-10-2018 CS348_06055 115c16c34f4a09f76871679619facb06 116 Gene3D G3DSA:3.90.1150.40 1 116 5.2E-69 T 13-10-2018 CS348_10965 7c6310ce8c5675d47116c793bc4d9a17 284 SUPERFAMILY SSF51569 3 277 4.3E-104 T 13-10-2018 CS348_10965 7c6310ce8c5675d47116c793bc4d9a17 284 Pfam PF00793 DAHP synthetase I family 10 274 9.3E-68 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_10965 7c6310ce8c5675d47116c793bc4d9a17 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.601 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_10965 7c6310ce8c5675d47116c793bc4d9a17 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 1.4E-118 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CS348_10965 7c6310ce8c5675d47116c793bc4d9a17 284 Gene3D G3DSA:3.20.20.70 1 284 2.0E-99 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_14835 56789b37f3008bc6eb5bbd6e47325b82 498 Gene3D G3DSA:1.20.1730.10 26 484 7.1E-102 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CS348_14835 56789b37f3008bc6eb5bbd6e47325b82 498 Pfam PF00474 Sodium:solute symporter family 38 442 1.0E-41 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_14835 56789b37f3008bc6eb5bbd6e47325b82 498 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 38 443 6.4E-68 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CS348_06955 06bf68571f8ae4348d310f0d42ca239f 206 Gene3D G3DSA:1.25.40.10 26 205 1.2E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_06955 06bf68571f8ae4348d310f0d42ca239f 206 Pfam PF09976 Tetratricopeptide repeat-like domain 15 205 8.0E-56 T 13-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 CS348_06955 06bf68571f8ae4348d310f0d42ca239f 206 PIRSF PIRSF006170 1 206 1.7E-59 T 13-10-2018 IPR026039 Uncharacterised protein family UPF0070 CS348_06955 06bf68571f8ae4348d310f0d42ca239f 206 SUPERFAMILY SSF48452 88 185 7.88E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_18010 127106554ea9ec2e4cf218611d5e06ac 156 Pfam PF10777 Inner membrane protein YlaC 1 152 5.1E-66 T 13-10-2018 IPR019713 Inner membrane protein YlaC CS348_23345 a06e7e584f29be3099d8ff1983da711a 302 Pfam PF04865 Baseplate J-like protein 116 261 1.4E-25 T 13-10-2018 IPR006949 Baseplate protein J-like CS348_23345 a06e7e584f29be3099d8ff1983da711a 302 PIRSF PIRSF020481 1 302 6.3E-127 T 13-10-2018 IPR014507 Baseplate assembly protein J, predicted CS348_01120 790dbacb60766f6118612e0a24a744de 523 TIGRFAM TIGR03369 cellulose_bcsE: cellulose biosynthesis protein BcsE 160 475 7.7E-132 T 13-10-2018 IPR017745 BcsE, GIL domain GO:0035438 CS348_01120 790dbacb60766f6118612e0a24a744de 523 Pfam PF10995 GGDEF I-site like or GIL domain 165 474 5.5E-124 T 13-10-2018 IPR017745 BcsE, GIL domain GO:0035438 CS348_03435 5c8ae6be6df14173bd2355b1ceb990fc 568 SUPERFAMILY SSF51338 3 556 3.36E-25 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_03435 5c8ae6be6df14173bd2355b1ceb990fc 568 Pfam PF07969 Amidohydrolase family 51 554 3.1E-73 T 13-10-2018 IPR013108 Amidohydrolase 3 CS348_03435 5c8ae6be6df14173bd2355b1ceb990fc 568 SUPERFAMILY SSF51556 64 515 1.82E-19 T 13-10-2018 IPR032466 Metal-dependent hydrolase CS348_03435 5c8ae6be6df14173bd2355b1ceb990fc 568 Gene3D G3DSA:3.10.310.70 81 201 9.9E-109 T 13-10-2018 CS348_03435 5c8ae6be6df14173bd2355b1ceb990fc 568 Gene3D G3DSA:3.20.20.140 63 514 9.9E-109 T 13-10-2018 CS348_03435 5c8ae6be6df14173bd2355b1ceb990fc 568 Gene3D G3DSA:2.30.40.10 9 532 9.9E-109 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CS348_25435 4bb34afbd8c1d990a2d85312dc725731 240 Pfam PF06952 PsiA protein 1 236 3.2E-63 T 13-10-2018 IPR009713 Uncharacterised protein family PsiA CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 Gene3D G3DSA:3.30.70.1200 1 78 1.5E-6 T 13-10-2018 CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 SUPERFAMILY SSF117987 80 232 8.11E-29 T 13-10-2018 CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 Gene3D G3DSA:3.30.70.1210 80 232 5.4E-23 T 13-10-2018 CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 SUPERFAMILY SSF117987 1 55 1.7E-7 T 13-10-2018 CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 Pfam PF08798 CRISPR associated protein 1 232 1.9E-52 T 13-10-2018 IPR010179 CRISPR-associated protein Cse3 CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 SMART SM01101 1 232 2.0E-96 T 13-10-2018 IPR010179 CRISPR-associated protein Cse3 CS348_05335 ccbd535d228f84075a32062ee2de5acb 235 TIGRFAM TIGR01907 casE_Cse3: CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI 1 233 2.2E-92 T 13-10-2018 IPR010179 CRISPR-associated protein Cse3 CS348_03315 25d5dcf12a8403e8f6637319b3c55b5e 491 SUPERFAMILY SSF56954 27 444 3.14E-96 T 13-10-2018 CS348_03315 25d5dcf12a8403e8f6637319b3c55b5e 491 Gene3D G3DSA:1.20.1600.10 25 449 2.3E-169 T 13-10-2018 CS348_03315 25d5dcf12a8403e8f6637319b3c55b5e 491 Pfam PF02321 Outer membrane efflux protein 29 211 5.6E-26 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_03315 25d5dcf12a8403e8f6637319b3c55b5e 491 Pfam PF02321 Outer membrane efflux protein 234 426 2.5E-32 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CS348_03315 25d5dcf12a8403e8f6637319b3c55b5e 491 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 23 439 3.6E-142 T 13-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 CS348_23395 bf9b1024ced635b515b89723261deedd 168 Pfam PF05926 Phage head completion protein (GPL) 30 166 3.5E-49 T 13-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 CS348_16955 3bea2d0cc57612eac79a4f54275f02a6 311 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 4 300 4.9E-93 T 13-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain CS348_16955 3bea2d0cc57612eac79a4f54275f02a6 311 Hamap MF_01431 Pyrimidine-specific ribonucleoside hydrolase RihA [rihA]. 1 311 79.253 T 13-10-2018 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA GO:0006206|GO:0015949|GO:0045437 CS348_16955 3bea2d0cc57612eac79a4f54275f02a6 311 SUPERFAMILY SSF53590 4 308 3.79E-107 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CS348_16955 3bea2d0cc57612eac79a4f54275f02a6 311 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 8 18 - T 13-10-2018 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 CS348_16955 3bea2d0cc57612eac79a4f54275f02a6 311 Gene3D G3DSA:3.90.245.10 1 311 5.2E-139 T 13-10-2018 IPR036452 Ribonucleoside hydrolase-like CS348_21410 b36bc49d0d6257b1ba2dfc3a2f140be3 128 PIRSF PIRSF000029 1 128 2.4E-64 T 13-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 CS348_21410 b36bc49d0d6257b1ba2dfc3a2f140be3 128 SUPERFAMILY SSF47175 23 128 2.49E-34 T 13-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 CS348_21410 b36bc49d0d6257b1ba2dfc3a2f140be3 128 Gene3D G3DSA:1.20.120.10 18 128 2.9E-52 T 13-10-2018 CS348_21410 b36bc49d0d6257b1ba2dfc3a2f140be3 128 Pfam PF07361 Cytochrome b562 24 128 1.4E-32 T 13-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 CS348_00750 debab6840dd91043b94069682ff8a510 227 Pfam PF11622 Protein of unknown function (DUF3251) 108 203 1.2E-6 T 13-10-2018 IPR021658 Domain of unknown function DUF3251 CS348_00750 debab6840dd91043b94069682ff8a510 227 Gene3D G3DSA:2.60.40.1620 92 227 8.2E-70 T 13-10-2018 IPR037125 Lipoprotein YajI-like superfamily CS348_17355 4db11b3ae16d4b489c9e9e48dabd57e5 217 Gene3D G3DSA:3.40.109.10 1 217 3.0E-63 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CS348_17355 4db11b3ae16d4b489c9e9e48dabd57e5 217 Pfam PF00881 Nitroreductase family 8 193 3.5E-35 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CS348_17355 4db11b3ae16d4b489c9e9e48dabd57e5 217 SUPERFAMILY SSF55469 1 216 2.36E-65 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CS348_13210 6718f11c11348ea07c3dd284d611332b 138 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 41.812 T 13-10-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 CS348_13210 6718f11c11348ea07c3dd284d611332b 138 SUPERFAMILY SSF82649 3 135 4.81E-44 T 13-10-2018 CS348_13210 6718f11c11348ea07c3dd284d611332b 138 Pfam PF02657 Fe-S metabolism associated domain 12 132 3.1E-42 T 13-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like CS348_13210 6718f11c11348ea07c3dd284d611332b 138 Gene3D G3DSA:3.90.1010.10 1 138 6.7E-55 T 13-10-2018 CS348_10555 7e9351469b339a5e6683e9e9c0f6ab40 79 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 2 79 4.0E-41 T 13-10-2018 IPR009950 Protein of unknown function DUF1480 CS348_10555 7e9351469b339a5e6683e9e9c0f6ab40 79 Pfam PF07351 Protein of unknown function (DUF1480) 1 78 7.6E-39 T 13-10-2018 IPR009950 Protein of unknown function DUF1480 CS348_24525 306cca7c08e4a2c1a26fcdc5548b0490 272 SUPERFAMILY SSF53223 9 105 1.21E-25 T 13-10-2018 CS348_24525 306cca7c08e4a2c1a26fcdc5548b0490 272 Gene3D G3DSA:3.40.50.10860 4 103 1.5E-32 T 13-10-2018 CS348_24525 306cca7c08e4a2c1a26fcdc5548b0490 272 Gene3D G3DSA:3.40.50.720 104 271 1.7E-35 T 13-10-2018 CS348_24525 306cca7c08e4a2c1a26fcdc5548b0490 272 SUPERFAMILY SSF51735 106 266 6.37E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_24525 306cca7c08e4a2c1a26fcdc5548b0490 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 26 93 3.9E-16 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CS348_25775 577826f4bcded616a78c14dcb34e8893 178 Gene3D G3DSA:1.10.1710.10 38 174 3.1E-15 T 13-10-2018 IPR036442 ProQ/FinO domain superfamily CS348_25775 577826f4bcded616a78c14dcb34e8893 178 SMART SM00945 58 176 4.6E-6 T 13-10-2018 IPR016103 ProQ/FinO domain CS348_25775 577826f4bcded616a78c14dcb34e8893 178 SUPERFAMILY SSF48657 47 163 2.62E-24 T 13-10-2018 IPR036442 ProQ/FinO domain superfamily CS348_25775 577826f4bcded616a78c14dcb34e8893 178 Pfam PF04352 ProQ/FINO family 65 168 2.6E-14 T 13-10-2018 IPR016103 ProQ/FinO domain CS348_01800 fe8de11b7f416438e165f17ea63302d8 269 Gene3D G3DSA:1.20.1080.10 1 259 4.3E-95 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_01800 fe8de11b7f416438e165f17ea63302d8 269 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site CS348_01800 fe8de11b7f416438e165f17ea63302d8 269 Pfam PF01226 Formate/nitrite transporter 20 247 2.8E-57 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 CS348_01800 fe8de11b7f416438e165f17ea63302d8 269 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 21 250 6.3E-84 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 CS348_01800 fe8de11b7f416438e165f17ea63302d8 269 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 13-10-2018 IPR024002 Formate/nitrite transporter, conserved site CS348_25080 4a8dd03d7c2b83dc36f7df5c3849e133 273 Pfam PF16932 Type IV secretory system, conjugal DNA-protein transfer 57 265 1.3E-74 T 13-10-2018 IPR031618 Putative type IV secretory system protein CS348_09640 b46b0c2c19be4c20ff7e856e3db69cd6 158 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 133 1.3E-21 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CS348_09640 b46b0c2c19be4c20ff7e856e3db69cd6 158 SMART SM00226 1 135 4.4E-40 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CS348_09640 b46b0c2c19be4c20ff7e856e3db69cd6 158 Gene3D G3DSA:3.40.50.2300 1 135 3.1E-39 T 13-10-2018 CS348_09640 b46b0c2c19be4c20ff7e856e3db69cd6 158 SUPERFAMILY SSF52788 1 135 3.01E-40 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CS348_19005 374aa7aec3f85a6cff0fa21a70dea334 266 SUPERFAMILY SSF56219 44 260 4.45E-26 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_19005 374aa7aec3f85a6cff0fa21a70dea334 266 Gene3D G3DSA:3.60.10.10 42 261 2.7E-20 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CS348_19005 374aa7aec3f85a6cff0fa21a70dea334 266 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 49 252 9.2E-9 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CS348_19005 374aa7aec3f85a6cff0fa21a70dea334 266 Hamap MF_01119 UPF0294 protein YafD [yafD]. 1 260 54.436 T 13-10-2018 IPR022958 Uncharacterised protein family UPF0294 CS348_13100 979d4a11d6460f25b9b66e21103610b8 80 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 4 69 2.0E-23 T 13-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 CS348_13100 979d4a11d6460f25b9b66e21103610b8 80 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 4 70 7.0E-26 T 13-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 376 1.6E-219 T 13-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 Gene3D G3DSA:3.40.640.10 1 249 4.0E-84 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 78.991 T 13-10-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 SUPERFAMILY SSF53383 2 375 4.71E-102 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 PIRSF PIRSF000390 1 376 2.4E-121 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 371 3.0E-88 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CS348_24170 fec6b3c261c4abedbae19d95d61a7b10 376 Gene3D G3DSA:3.90.1150.10 250 376 3.2E-26 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CS348_10785 59eb6272f537f272d2860743c4f89cb8 176 SUPERFAMILY SSF158442 15 159 6.93E-45 T 13-10-2018 IPR023380 DsbB-like superfamily CS348_10785 59eb6272f537f272d2860743c4f89cb8 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.553 T 13-10-2018 IPR022920 Disulphide bond formation protein DsbB CS348_10785 59eb6272f537f272d2860743c4f89cb8 176 Gene3D G3DSA:1.20.1550.10 1 176 1.4E-70 T 13-10-2018 IPR023380 DsbB-like superfamily CS348_10785 59eb6272f537f272d2860743c4f89cb8 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 4.1E-45 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 CS348_09585 0c34c338099db472bf727afa939e5dcd 356 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 345 5.2E-114 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CS348_09585 0c34c338099db472bf727afa939e5dcd 356 SUPERFAMILY SSF52733 5 343 8.63E-112 T 13-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CS348_09585 0c34c338099db472bf727afa939e5dcd 356 Pfam PF02277 Phosphoribosyltransferase 11 344 1.5E-115 T 13-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CS348_09585 0c34c338099db472bf727afa939e5dcd 356 Gene3D G3DSA:1.10.1610.10 11 338 2.8E-135 T 13-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CS348_09585 0c34c338099db472bf727afa939e5dcd 356 Gene3D G3DSA:3.40.50.10210 58 329 2.8E-135 T 13-10-2018 CS348_09585 0c34c338099db472bf727afa939e5dcd 356 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 348 32.709 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CS348_20210 e5899b48d19a5267e9350e602b5ba11b 334 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 1.8E-14 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_20210 e5899b48d19a5267e9350e602b5ba11b 334 SUPERFAMILY SSF53850 141 285 1.25E-7 T 13-10-2018 CS348_20210 e5899b48d19a5267e9350e602b5ba11b 334 Gene3D G3DSA:1.10.10.10 4 92 6.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20210 e5899b48d19a5267e9350e602b5ba11b 334 SUPERFAMILY SSF46785 9 87 1.33E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_20210 e5899b48d19a5267e9350e602b5ba11b 334 Gene3D G3DSA:3.40.190.10 174 279 8.0E-11 T 13-10-2018 CS348_20210 e5899b48d19a5267e9350e602b5ba11b 334 Gene3D G3DSA:3.40.190.10 103 173 8.0E-11 T 13-10-2018 CS348_05800 cb7585d9dbdc70bc130b8884523a7f07 255 Gene3D G3DSA:3.40.50.12280 14 184 5.4E-52 T 13-10-2018 CS348_05800 cb7585d9dbdc70bc130b8884523a7f07 255 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 48 157 2.7E-23 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05800 cb7585d9dbdc70bc130b8884523a7f07 255 SUPERFAMILY SSF56770 36 168 7.2E-50 T 13-10-2018 CS348_05800 cb7585d9dbdc70bc130b8884523a7f07 255 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 131 147 - T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_18230 bb19d8cace3ba77232359ed26b74d8aa 286 Gene3D G3DSA:1.10.3720.10 14 285 2.6E-48 T 13-10-2018 IPR035906 MetI-like superfamily CS348_18230 bb19d8cace3ba77232359ed26b74d8aa 286 SUPERFAMILY SSF161098 14 276 3.27E-48 T 13-10-2018 IPR035906 MetI-like superfamily CS348_18230 bb19d8cace3ba77232359ed26b74d8aa 286 TIGRFAM TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, permease protein 9 286 3.4E-150 T 13-10-2018 IPR017636 2-aminoethylphosphonate ABC transporter system, permease protein phnU GO:0016020|GO:0033223 CS348_18230 bb19d8cace3ba77232359ed26b74d8aa 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 281 8.1E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_20205 bcd29396fcb9dad70e03a23a208e2256 145 SUPERFAMILY SSF46894 24 99 2.38E-6 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_20205 bcd29396fcb9dad70e03a23a208e2256 145 Gene3D G3DSA:1.10.10.10 8 116 6.1E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_20205 bcd29396fcb9dad70e03a23a208e2256 145 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 99 1.2E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CS348_10790 5123e7e35bfcb42f2ba3aafa8e084b95 514 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 514 367.871 T 13-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 CS348_10790 5123e7e35bfcb42f2ba3aafa8e084b95 514 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 512 5.8E-302 T 13-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 CS348_10790 5123e7e35bfcb42f2ba3aafa8e084b95 514 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 4.1E-299 T 13-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 CS348_03220 dd32de3ce4b097ba55bafc90d7973816 204 Gene3D G3DSA:2.30.30.40 18 85 5.0E-9 T 13-10-2018 CS348_03220 dd32de3ce4b097ba55bafc90d7973816 204 Pfam PF08239 Bacterial SH3 domain 35 81 1.6E-9 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CS348_03220 dd32de3ce4b097ba55bafc90d7973816 204 SMART SM00287 23 86 3.6E-13 T 13-10-2018 IPR003646 SH3-like domain, bacterial-type CS348_03220 dd32de3ce4b097ba55bafc90d7973816 204 PIRSF PIRSF006158 1 203 1.1E-69 T 13-10-2018 IPR016476 SH3 domain protein CS348_03220 dd32de3ce4b097ba55bafc90d7973816 204 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 202 2.9E-51 T 13-10-2018 IPR016476 SH3 domain protein CS348_22635 1273a190876443b9fe2c48141bc5679c 90 Pfam PF11656 YjbD family (DUF3811) 3 90 7.1E-39 T 13-10-2018 IPR020317 Uncharacterised protein family YjbD CS348_22635 1273a190876443b9fe2c48141bc5679c 90 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 3 90 8.0E-34 T 13-10-2018 IPR020317 Uncharacterised protein family YjbD CS348_18025 8f35e14c0ee380295105748eda0ea1bb 516 SUPERFAMILY SSF141868 273 514 3.4E-76 T 13-10-2018 IPR035919 EAL domain superfamily CS348_18025 8f35e14c0ee380295105748eda0ea1bb 516 Pfam PF00563 EAL domain 274 502 1.2E-67 T 13-10-2018 IPR001633 EAL domain CS348_18025 8f35e14c0ee380295105748eda0ea1bb 516 Pfam PF12792 CSS motif domain associated with EAL 38 242 3.3E-43 T 13-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain CS348_18025 8f35e14c0ee380295105748eda0ea1bb 516 SMART SM00052 267 507 2.4E-108 T 13-10-2018 IPR001633 EAL domain CS348_18025 8f35e14c0ee380295105748eda0ea1bb 516 Gene3D G3DSA:3.20.20.450 266 515 1.9E-82 T 13-10-2018 IPR035919 EAL domain superfamily CS348_23875 e448395ce434d7651835d0dfba87a5f6 181 SUPERFAMILY SSF52218 2 172 1.65E-31 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_23875 e448395ce434d7651835d0dfba87a5f6 181 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 CS348_23875 e448395ce434d7651835d0dfba87a5f6 181 Gene3D G3DSA:3.40.50.360 3 107 6.8E-13 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_23875 e448395ce434d7651835d0dfba87a5f6 181 Pfam PF12724 Flavodoxin domain 4 152 2.8E-50 T 13-10-2018 IPR026816 Flavodoxin domain CS348_17575 e1d43a54bde91a57d21a9f3a73827e86 100 Pfam PF16080 Bacteriophage holin family HP1 2 56 8.6E-15 T 13-10-2018 IPR032118 Bacteriophage holin HP1 family CS348_23505 0e78d02d3709ba16498df681fff9c264 250 Pfam PF03473 MOSC domain 68 179 8.5E-20 T 13-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 CS348_23505 0e78d02d3709ba16498df681fff9c264 250 Pfam PF03475 3-alpha domain 190 233 1.2E-11 T 13-10-2018 IPR005163 3-alpha domain CS348_23505 0e78d02d3709ba16498df681fff9c264 250 Gene3D G3DSA:2.40.33.20 11 249 5.2E-81 T 13-10-2018 CS348_23505 0e78d02d3709ba16498df681fff9c264 250 SUPERFAMILY SSF50800 17 245 5.75E-76 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily CS348_05310 439754e399f66fc3e04a1aba17cb7e68 899 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 30 229 1.7E-24 T 13-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain CS348_05310 439754e399f66fc3e04a1aba17cb7e68 899 Gene3D G3DSA:1.10.3210.30 5 278 3.2E-48 T 13-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily CS348_05310 439754e399f66fc3e04a1aba17cb7e68 899 Gene3D G3DSA:3.40.50.300 521 684 2.6E-9 T 13-10-2018 CS348_05310 439754e399f66fc3e04a1aba17cb7e68 899 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 303 675 1.4E-63 T 13-10-2018 IPR006474 Helicase Cas3, CRISPR-associated, core CS348_05310 439754e399f66fc3e04a1aba17cb7e68 899 SMART SM00487 279 520 0.0029 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_05310 439754e399f66fc3e04a1aba17cb7e68 899 SUPERFAMILY SSF52540 299 674 1.51E-26 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14225 163c7ec67b91aa34ffc9eed766f6e53d 109 PIRSF PIRSF037256 1 109 6.4E-55 T 13-10-2018 IPR017160 Uncharacterised conserved protein UCP037256 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 Gene3D G3DSA:2.30.170.50 1 70 2.2E-33 T 13-10-2018 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.9E-23 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.9E-23 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.9E-23 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 SUPERFAMILY SSF143800 1 66 2.71E-28 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 31.503 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 8.0E-35 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_23105 a8ad45ba2a32098610dd1497c4537183 70 Pfam PF01197 Ribosomal protein L31 1 64 9.2E-31 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 1.5E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 1.5E-9 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 SMART SM00895 97 226 4.5E-22 T 13-10-2018 IPR011711 GntR, C-terminal CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 73 1.0E-23 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 Gene3D G3DSA:1.10.10.10 5 78 5.5E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 Pfam PF07729 FCD domain 97 225 4.4E-20 T 13-10-2018 IPR011711 GntR, C-terminal CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 SMART SM00345 14 73 5.6E-27 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 SUPERFAMILY SSF48008 95 234 4.97E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 SUPERFAMILY SSF46785 3 77 1.19E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_21080 7b3fc3bb51bb690d531ac914967e7e7a 257 Gene3D G3DSA:1.20.120.530 96 237 1.2E-24 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CS348_05450 93d3df435a0ef966fa119edc5ef4f400 212 SMART SM01007 13 192 1.3E-58 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_05450 93d3df435a0ef966fa119edc5ef4f400 212 Gene3D G3DSA:3.40.225.10 7 212 3.8E-60 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_05450 93d3df435a0ef966fa119edc5ef4f400 212 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 13 190 3.1E-44 T 13-10-2018 IPR001303 Class II aldolase/adducin N-terminal CS348_05450 93d3df435a0ef966fa119edc5ef4f400 212 SUPERFAMILY SSF53639 7 211 4.12E-61 T 13-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CS348_17085 7e524ddec696a40d92ab084ac8b1deb2 190 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 7 190 43.368 T 13-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP CS348_17085 7e524ddec696a40d92ab084ac8b1deb2 190 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 37 178 2.0E-80 T 13-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP CS348_17085 7e524ddec696a40d92ab084ac8b1deb2 190 Gene3D G3DSA:2.40.160.20 29 190 4.8E-77 T 13-10-2018 CS348_17085 7e524ddec696a40d92ab084ac8b1deb2 190 SUPERFAMILY SSF56925 31 190 2.04E-80 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_17085 7e524ddec696a40d92ab084ac8b1deb2 190 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 41 187 9.4E-67 T 13-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP CS348_02330 5a228e1dcd0a3410efec88b048740ab5 334 Pfam PF00174 Oxidoreductase molybdopterin binding domain 108 267 4.4E-30 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 CS348_02330 5a228e1dcd0a3410efec88b048740ab5 334 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 2 334 54.795 T 13-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 CS348_02330 5a228e1dcd0a3410efec88b048740ab5 334 Gene3D G3DSA:3.90.420.10 64 334 8.6E-126 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 CS348_02330 5a228e1dcd0a3410efec88b048740ab5 334 SUPERFAMILY SSF56524 76 330 2.35E-93 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 CS348_12245 fe9433f9b212146e82e37a34584c0ccc 326 Pfam PF03060 Nitronate monooxygenase 6 323 7.7E-56 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 CS348_12245 fe9433f9b212146e82e37a34584c0ccc 326 SUPERFAMILY SSF51412 5 323 7.78E-48 T 13-10-2018 CS348_12245 fe9433f9b212146e82e37a34584c0ccc 326 Gene3D G3DSA:3.20.20.70 2 325 7.0E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_03295 0d1e7062c027af0b1eb5f44b7ff11c43 276 Gene3D G3DSA:3.40.830.10 8 276 1.2E-93 T 13-10-2018 CS348_03295 0d1e7062c027af0b1eb5f44b7ff11c43 276 SUPERFAMILY SSF53213 20 275 1.44E-92 T 13-10-2018 CS348_03295 0d1e7062c027af0b1eb5f44b7ff11c43 276 PIRSF PIRSF006157 15 276 1.5E-91 T 13-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 CS348_03295 0d1e7062c027af0b1eb5f44b7ff11c43 276 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 22 274 5.7E-27 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 CS348_23100 0c48681e2c55a4c8579ea2f03c569218 220 Pfam PF09601 Protein of unknown function (DUF2459) 36 197 6.2E-46 T 13-10-2018 IPR011727 Conserved hypothetical protein CHP02117 CS348_23100 0c48681e2c55a4c8579ea2f03c569218 220 TIGRFAM TIGR02117 chp_urease_rgn: conserved hypothetical protein 5 205 4.8E-89 T 13-10-2018 IPR011727 Conserved hypothetical protein CHP02117 CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 115 123 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 11 23 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 27 39 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 136 145 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 54 67 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 107 113 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 PRINTS PR01227 Salmonella surface presentation of antigen gene type M signature 94 105 1.6E-35 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_05555 94a85ce41cae99fff6941d8a03613a9c 147 Pfam PF02090 Salmonella surface presentation of antigen gene type M protein 6 145 4.6E-63 T 13-10-2018 IPR002954 Salmonella surface presentation of antigen M protein CS348_14240 c595cc557ece27ac9fff672f093d4606 213 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 205 8.0E-98 T 13-10-2018 CS348_14240 c595cc557ece27ac9fff672f093d4606 213 SUPERFAMILY SSF101322 2 210 1.44E-80 T 13-10-2018 IPR035932 HflD-like superfamily CS348_14240 c595cc557ece27ac9fff672f093d4606 213 Gene3D G3DSA:1.10.3890.10 1 213 1.4E-82 T 13-10-2018 IPR035932 HflD-like superfamily CS348_14240 c595cc557ece27ac9fff672f093d4606 213 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 207 36.218 T 13-10-2018 IPR007451 High frequency lysogenization protein HflD CS348_14240 c595cc557ece27ac9fff672f093d4606 213 Pfam PF04356 Protein of unknown function (DUF489) 7 199 5.9E-74 T 13-10-2018 IPR007451 High frequency lysogenization protein HflD CS348_14410 a01ecd16d8c598a59fa27edd2c4c6251 213 SUPERFAMILY SSF52540 3 209 2.1E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14410 a01ecd16d8c598a59fa27edd2c4c6251 213 Hamap MF_00165 Thymidylate kinase [tmk]. 4 208 28.694 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CS348_14410 a01ecd16d8c598a59fa27edd2c4c6251 213 Pfam PF02223 Thymidylate kinase 8 200 1.4E-58 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 CS348_14410 a01ecd16d8c598a59fa27edd2c4c6251 213 ProSitePatterns PS01331 Thymidylate kinase signature. 97 109 - T 13-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CS348_14410 a01ecd16d8c598a59fa27edd2c4c6251 213 Gene3D G3DSA:3.40.50.300 3 213 5.9E-66 T 13-10-2018 CS348_14410 a01ecd16d8c598a59fa27edd2c4c6251 213 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 3 200 8.9E-67 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 53 295 2.5E-16 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 Gene3D G3DSA:1.10.287.470 95 186 5.6E-85 T 13-10-2018 CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 363 1.7E-54 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 SUPERFAMILY SSF111369 53 299 4.45E-28 T 13-10-2018 CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 Gene3D G3DSA:2.40.50.100 61 223 5.6E-85 T 13-10-2018 CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 Gene3D G3DSA:2.40.420.20 45 363 5.6E-85 T 13-10-2018 CS348_15500 17658bcce7e5096f6b97d8aad2c217f5 372 Gene3D G3DSA:2.40.30.170 50 302 5.6E-85 T 13-10-2018 CS348_17995 f5af28f2760284101849f1c7d86dd79c 124 Pfam PF10757 Biofilm formation regulator YbaJ 1 116 7.9E-64 T 13-10-2018 IPR019693 Biofilm formation regulator YbaJ CS348_12640 ba6f5685b9066f14271de9ddc9f27295 120 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 120 31.3 T 13-10-2018 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 CS348_12640 ba6f5685b9066f14271de9ddc9f27295 120 Gene3D G3DSA:1.10.3730.20 1 108 7.8E-29 T 13-10-2018 CS348_12640 ba6f5685b9066f14271de9ddc9f27295 120 SUPERFAMILY SSF103481 6 106 6.41E-17 T 13-10-2018 CS348_12640 ba6f5685b9066f14271de9ddc9f27295 120 Pfam PF00893 Small Multidrug Resistance protein 3 93 7.6E-25 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CS348_09430 a08b4bc8950cfd598e668ca3c1e13ed8 210 Pfam PF06130 Phosphate propanoyltransferase 131 196 7.2E-19 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CS348_09430 a08b4bc8950cfd598e668ca3c1e13ed8 210 Pfam PF06130 Phosphate propanoyltransferase 23 101 1.0E-26 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CS348_09430 a08b4bc8950cfd598e668ca3c1e13ed8 210 PIRSF PIRSF010130 1 210 4.7E-88 T 13-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 CS348_22200 520874c0e74e1c9ecd0d824961acc187 445 Gene3D G3DSA:1.20.1740.10 5 440 3.5E-75 T 13-10-2018 CS348_22200 520874c0e74e1c9ecd0d824961acc187 445 PIRSF PIRSF006060 1 434 1.0E-64 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_22200 520874c0e74e1c9ecd0d824961acc187 445 Pfam PF13520 Amino acid permease 12 403 1.7E-51 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_23400 982645cf224d18fd1153fbc8a14979db 249 Pfam PF05944 Phage small terminase subunit 35 161 8.9E-40 T 13-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 CS348_04575 b79976fc3665da4024f01feebb8d4a76 229 SMART SM00382 28 213 3.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_04575 b79976fc3665da4024f01feebb8d4a76 229 SUPERFAMILY SSF52540 2 215 6.03E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_04575 b79976fc3665da4024f01feebb8d4a76 229 Pfam PF00005 ABC transporter 19 164 2.2E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_04575 b79976fc3665da4024f01feebb8d4a76 229 Gene3D G3DSA:3.40.50.300 1 227 2.1E-53 T 13-10-2018 CS348_01035 a738de6469c5afbfeef2958b5b5e46be 563 SUPERFAMILY SSF53649 250 542 3.18E-21 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_01035 a738de6469c5afbfeef2958b5b5e46be 563 Gene3D G3DSA:3.40.720.10 238 553 5.8E-63 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_01035 a738de6469c5afbfeef2958b5b5e46be 563 Pfam PF08019 Domain of unknown function (DUF1705) 57 171 3.4E-17 T 13-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 CS348_01035 a738de6469c5afbfeef2958b5b5e46be 563 Pfam PF00884 Sulfatase 250 538 4.4E-50 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 Pfam PF03519 Invasion protein B family 18 95 3.4E-32 T 13-10-2018 IPR003065 Surface presentation of antigens protein SpaK CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 Gene3D G3DSA:3.30.1460.10 1 135 1.9E-54 T 13-10-2018 CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 PRINTS PR01305 Invasion protein B family signature 98 111 3.1E-25 T 13-10-2018 IPR003065 Surface presentation of antigens protein SpaK CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 PRINTS PR01305 Invasion protein B family signature 31 41 3.1E-25 T 13-10-2018 IPR003065 Surface presentation of antigens protein SpaK CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 PRINTS PR01305 Invasion protein B family signature 18 31 3.1E-25 T 13-10-2018 IPR003065 Surface presentation of antigens protein SpaK CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 PRINTS PR01305 Invasion protein B family signature 111 123 3.1E-25 T 13-10-2018 IPR003065 Surface presentation of antigens protein SpaK CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 PRINTS PR01305 Invasion protein B family signature 41 55 3.1E-25 T 13-10-2018 IPR003065 Surface presentation of antigens protein SpaK CS348_05545 c1565d22a7b31859ae8026cbcf3d2d7b 135 SUPERFAMILY SSF69635 1 132 2.51E-49 T 13-10-2018 CS348_06425 249e1fe0f0a45fae9c47aacdaf93ee43 82 Gene3D G3DSA:3.30.1320.10 1 82 5.4E-33 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06425 249e1fe0f0a45fae9c47aacdaf93ee43 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 13-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_06425 249e1fe0f0a45fae9c47aacdaf93ee43 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.086 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06425 249e1fe0f0a45fae9c47aacdaf93ee43 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.6E-28 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06425 249e1fe0f0a45fae9c47aacdaf93ee43 82 SUPERFAMILY SSF54565 1 76 8.5E-29 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_06425 249e1fe0f0a45fae9c47aacdaf93ee43 82 Pfam PF00886 Ribosomal protein S16 8 68 3.3E-24 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_11195 1d918a3ad774a3858110cf8170d5f15f 212 Pfam PF03922 OmpW family 23 212 1.5E-68 T 13-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 CS348_11195 1d918a3ad774a3858110cf8170d5f15f 212 SUPERFAMILY SSF56925 42 212 2.51E-25 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_11195 1d918a3ad774a3858110cf8170d5f15f 212 Gene3D G3DSA:2.40.160.20 22 212 3.2E-85 T 13-10-2018 CS348_08085 00583de10d4564a71cd0ce0b5984ccd0 153 Gene3D G3DSA:3.40.630.30 1 149 3.0E-40 T 13-10-2018 CS348_08085 00583de10d4564a71cd0ce0b5984ccd0 153 Pfam PF13673 Acetyltransferase (GNAT) domain 46 149 7.4E-15 T 13-10-2018 IPR000182 GNAT domain CS348_08085 00583de10d4564a71cd0ce0b5984ccd0 153 SUPERFAMILY SSF55729 1 150 7.8E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_21240 39dba24322b90e2b1f586d0255c65493 162 Pfam PF12276 Protein of unknown function (DUF3617) 1 154 1.9E-27 T 13-10-2018 IPR022061 Protein of unknown function DUF3617 CS348_08245 0486fde04344228a0809589ddccd20eb 356 SUPERFAMILY SSF51695 29 349 1.78E-94 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CS348_08245 0486fde04344228a0809589ddccd20eb 356 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 33 347 2.3E-77 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CS348_08245 0486fde04344228a0809589ddccd20eb 356 Gene3D G3DSA:3.20.20.190 26 353 1.9E-140 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CS348_06200 cceed189278b87b7cae23641b205c663 726 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 165 4.0E-30 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CS348_06200 cceed189278b87b7cae23641b205c663 726 Gene3D G3DSA:2.170.130.10 24 170 2.0E-42 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CS348_06200 cceed189278b87b7cae23641b205c663 726 Pfam PF00593 TonB dependent receptor 262 724 1.2E-57 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CS348_06200 cceed189278b87b7cae23641b205c663 726 Gene3D G3DSA:2.40.170.20 176 726 1.1E-193 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CS348_06200 cceed189278b87b7cae23641b205c663 726 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 709 726 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site CS348_06200 cceed189278b87b7cae23641b205c663 726 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 52 726 3.1E-86 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CS348_06200 cceed189278b87b7cae23641b205c663 726 SUPERFAMILY SSF56935 34 726 3.48E-132 T 13-10-2018 CS348_10330 6b8f90b9e52f1c858c296ab84933f480 213 Gene3D G3DSA:3.20.20.70 1 213 2.3E-73 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_10330 6b8f90b9e52f1c858c296ab84933f480 213 SUPERFAMILY SSF51569 4 209 2.56E-68 T 13-10-2018 CS348_10330 6b8f90b9e52f1c858c296ab84933f480 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 13-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_10330 6b8f90b9e52f1c858c296ab84933f480 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 13-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_10330 6b8f90b9e52f1c858c296ab84933f480 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 4.4E-86 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_10330 6b8f90b9e52f1c858c296ab84933f480 213 Pfam PF01081 KDPG and KHG aldolase 9 203 5.1E-92 T 13-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 230 28.065 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 PRINTS PR01008 Flagellar L-ring protein signature 146 161 3.2E-36 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 PRINTS PR01008 Flagellar L-ring protein signature 73 85 3.2E-36 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 PRINTS PR01008 Flagellar L-ring protein signature 172 188 3.2E-36 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 PRINTS PR01008 Flagellar L-ring protein signature 193 207 3.2E-36 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 PRINTS PR01008 Flagellar L-ring protein signature 209 223 3.2E-36 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_14545 0438a7596668a8313a53ab635e58eae0 232 Pfam PF02107 Flagellar L-ring protein 47 231 1.8E-60 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 CS348_09800 5b45d34c6da28d9f19feaffe001cde64 305 PIRSF PIRSF016660 3 305 1.3E-127 T 13-10-2018 IPR008526 Inner membrane protein YedI CS348_09800 5b45d34c6da28d9f19feaffe001cde64 305 Pfam PF05661 Protein of unknown function (DUF808) 6 292 9.7E-115 T 13-10-2018 IPR008526 Inner membrane protein YedI CS348_02550 a5261a44f36c45e2cb4ed26e17475a87 155 SUPERFAMILY SSF51197 1 153 3.3E-42 T 13-10-2018 CS348_02550 a5261a44f36c45e2cb4ed26e17475a87 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 1.5E-60 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family CS348_02550 a5261a44f36c45e2cb4ed26e17475a87 155 Gene3D G3DSA:2.60.120.370 1 153 6.1E-41 T 13-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily CS348_02550 a5261a44f36c45e2cb4ed26e17475a87 155 Pfam PF04074 Domain of unknown function (DUF386) 1 149 7.0E-39 T 13-10-2018 IPR004375 YhcH/YjgK/YiaL family CS348_08795 a7aedc91ef4ef1ed502afcd252026fb5 195 Pfam PF06930 Protein of unknown function (DUF1282) 7 177 4.0E-46 T 13-10-2018 IPR009698 Protein of unknown function DUF1282 CS348_22355 a65ad69a92852f022c09e15b1525dfd9 222 Pfam PF00043 Glutathione S-transferase, C-terminal domain 138 205 9.3E-7 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CS348_22355 a65ad69a92852f022c09e15b1525dfd9 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 73 1.0E-17 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CS348_22355 a65ad69a92852f022c09e15b1525dfd9 222 Gene3D G3DSA:1.20.1050.10 84 211 9.0E-25 T 13-10-2018 CS348_22355 a65ad69a92852f022c09e15b1525dfd9 222 Gene3D G3DSA:3.40.30.10 1 83 5.9E-34 T 13-10-2018 CS348_22355 a65ad69a92852f022c09e15b1525dfd9 222 SUPERFAMILY SSF47616 81 216 4.23E-22 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CS348_22355 a65ad69a92852f022c09e15b1525dfd9 222 SUPERFAMILY SSF52833 1 78 1.79E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_22245 5afd3b4c612dbec7c0fbad988ab38c2f 302 Gene3D G3DSA:2.60.120.330 47 227 1.2E-42 T 13-10-2018 IPR027443 Isopenicillin N synthase-like CS348_22245 5afd3b4c612dbec7c0fbad988ab38c2f 302 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 222 5.3E-47 T 13-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 CS348_22245 5afd3b4c612dbec7c0fbad988ab38c2f 302 SUPERFAMILY SSF51197 95 229 3.84E-19 T 13-10-2018 CS348_08625 bd97b6e51d3d70dea51dd3c01d8ce4f6 489 Gene3D G3DSA:1.20.1740.10 12 477 2.4E-64 T 13-10-2018 CS348_08625 bd97b6e51d3d70dea51dd3c01d8ce4f6 489 PIRSF PIRSF006060 1 485 5.7E-79 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_08625 bd97b6e51d3d70dea51dd3c01d8ce4f6 489 Pfam PF00324 Amino acid permease 21 476 2.9E-145 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_08625 bd97b6e51d3d70dea51dd3c01d8ce4f6 489 ProSitePatterns PS00218 Amino acid permeases signature. 46 77 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_08360 79f09a08110fb6b51b68239e503b13c0 87 Hamap MF_02200 Chaperone NapD [napD]. 5 82 18.484 T 13-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly CS348_08360 79f09a08110fb6b51b68239e503b13c0 87 Pfam PF03927 NapD protein 5 81 3.2E-25 T 13-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly CS348_08360 79f09a08110fb6b51b68239e503b13c0 87 Gene3D G3DSA:3.30.70.920 5 75 1.8E-27 T 13-10-2018 CS348_06270 d204c1359771d56a046e2e710593aeb6 624 SUPERFAMILY SSF56349 210 503 3.53E-7 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CS348_13680 80d99c8e969b2358d3d600aafc9b78b2 252 Pfam PF04338 Protein of unknown function, DUF481 48 251 6.6E-56 T 13-10-2018 IPR007433 Protein of unknown function DUF481 CS348_11700 a4e9f57e6d5102b585fe2054eff81410 112 Pfam PF00893 Small Multidrug Resistance protein 6 96 6.4E-28 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CS348_11700 a4e9f57e6d5102b585fe2054eff81410 112 SUPERFAMILY SSF103481 7 108 4.84E-24 T 13-10-2018 CS348_11700 a4e9f57e6d5102b585fe2054eff81410 112 Gene3D G3DSA:1.10.3730.20 4 112 3.9E-37 T 13-10-2018 CS348_15070 ec94aa8db2201bbc627143d487ae57a8 219 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 213 4.7E-43 T 13-10-2018 IPR006214 Bax inhibitor 1-related CS348_15070 ec94aa8db2201bbc627143d487ae57a8 219 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 87 117 - T 13-10-2018 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 CS348_11270 4e06b66808cfde7df85228ed66d67860 253 Pfam PF00106 short chain dehydrogenase 14 209 7.2E-54 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 1.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 1.9E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CS348_11270 4e06b66808cfde7df85228ed66d67860 253 SUPERFAMILY SSF51735 10 244 2.08E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_11270 4e06b66808cfde7df85228ed66d67860 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 CS348_11270 4e06b66808cfde7df85228ed66d67860 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 211 0.0016 T 13-10-2018 CS348_11270 4e06b66808cfde7df85228ed66d67860 253 Gene3D G3DSA:3.40.50.720 1 253 8.9E-80 T 13-10-2018 CS348_09920 0d22242a0244db1d0cb8a52f26e81655 133 Gene3D G3DSA:2.40.128.500 14 133 2.3E-62 T 13-10-2018 IPR038624 YedD-like superfamily CS348_09920 0d22242a0244db1d0cb8a52f26e81655 133 Pfam PF13987 YedD-like protein 25 129 9.8E-55 T 13-10-2018 IPR025596 YedD-like protein CS348_12725 690ed93eed241cf1fe8e278071011760 502 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 480 8.8E-138 T 13-10-2018 IPR010352 Protein of unknown function DUF945 CS348_24435 c4a35b181e3704a3f7db5d07a7597790 207 Pfam PF02527 rRNA small subunit methyltransferase G 21 200 1.6E-66 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CS348_24435 c4a35b181e3704a3f7db5d07a7597790 207 SUPERFAMILY SSF53335 4 205 2.13E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_24435 c4a35b181e3704a3f7db5d07a7597790 207 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 25 203 2.6E-61 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CS348_24435 c4a35b181e3704a3f7db5d07a7597790 207 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 201 28.463 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CS348_24435 c4a35b181e3704a3f7db5d07a7597790 207 Gene3D G3DSA:3.40.50.150 1 207 7.2E-74 T 13-10-2018 CS348_24435 c4a35b181e3704a3f7db5d07a7597790 207 PIRSF PIRSF003078 1 207 8.3E-67 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CS348_21090 6ac1fb3d7cd4b3effa80f34cc7baf907 221 SUPERFAMILY SSF53474 25 212 1.14E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_21090 6ac1fb3d7cd4b3effa80f34cc7baf907 221 Pfam PF01738 Dienelactone hydrolase family 26 212 2.0E-17 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 CS348_21090 6ac1fb3d7cd4b3effa80f34cc7baf907 221 Gene3D G3DSA:3.40.50.1820 16 217 3.5E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_11205 52350464269e59ac101dcddf8617e297 168 Gene3D G3DSA:1.20.1260.10 1 168 2.7E-75 T 13-10-2018 IPR012347 Ferritin-like CS348_11205 52350464269e59ac101dcddf8617e297 168 Pfam PF05974 Domain of unknown function (DUF892) 4 156 1.3E-48 T 13-10-2018 IPR010287 Domain of unknown function DUF892 CS348_11205 52350464269e59ac101dcddf8617e297 168 SUPERFAMILY SSF47240 2 155 1.3E-46 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_16175 78e160d791da931f56fef254ee535766 167 Pfam PF00210 Ferritin-like domain 31 166 1.6E-21 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CS348_16175 78e160d791da931f56fef254ee535766 167 Gene3D G3DSA:1.20.1260.10 1 167 1.2E-52 T 13-10-2018 IPR012347 Ferritin-like CS348_16175 78e160d791da931f56fef254ee535766 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 49.369 T 13-10-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 CS348_16175 78e160d791da931f56fef254ee535766 167 ProSitePatterns PS00819 Dps protein family signature 2. 77 91 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 CS348_16175 78e160d791da931f56fef254ee535766 167 SUPERFAMILY SSF47240 10 167 3.87E-50 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_16175 78e160d791da931f56fef254ee535766 167 PIRSF PIRSF005900 8 167 2.5E-43 T 13-10-2018 IPR002177 DNA-binding protein Dps CS348_16175 78e160d791da931f56fef254ee535766 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 2.3E-13 T 13-10-2018 IPR002177 DNA-binding protein Dps CS348_16175 78e160d791da931f56fef254ee535766 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 2.3E-13 T 13-10-2018 IPR002177 DNA-binding protein Dps CS348_16175 78e160d791da931f56fef254ee535766 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 2.3E-13 T 13-10-2018 IPR002177 DNA-binding protein Dps CS348_16175 78e160d791da931f56fef254ee535766 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 13-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 CS348_18420 473aa9ecb076ea8a3ce8adbe8d248284 63 Gene3D G3DSA:3.30.730.30 1 63 7.6E-39 T 13-10-2018 IPR038462 YaiA-like superfamily CS348_18420 473aa9ecb076ea8a3ce8adbe8d248284 63 Pfam PF16362 YaiA protein 1 63 1.7E-39 T 13-10-2018 IPR032303 YaiA protein CS348_00690 3ef8acd4b7d885e5577a4294b97c2242 427 Gene3D G3DSA:2.70.70.10 286 426 2.3E-39 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_00690 3ef8acd4b7d885e5577a4294b97c2242 427 Pfam PF01551 Peptidase family M23 328 421 7.3E-26 T 13-10-2018 IPR016047 Peptidase M23 CS348_00690 3ef8acd4b7d885e5577a4294b97c2242 427 SUPERFAMILY SSF51261 227 425 6.8E-48 T 13-10-2018 IPR011055 Duplicated hybrid motif CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 2.0E-27 T 13-10-2018 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.0E-27 T 13-10-2018 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 2.0E-27 T 13-10-2018 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 2.0E-27 T 13-10-2018 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 2.0E-27 T 13-10-2018 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 2.0E-27 T 13-10-2018 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 Gene3D G3DSA:1.10.3860.10 19 460 2.7E-109 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 SUPERFAMILY SSF118215 29 443 2.48E-97 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CS348_13715 2e471fe6d2b6a508c477dbff345182fd 463 Pfam PF00375 Sodium:dicarboxylate symporter family 29 443 2.8E-104 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 4.2E-59 T 13-10-2018 IPR022161 DNA helicase IV, N-terminal domain CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 Pfam PF13361 UvrD-like helicase C-terminal domain 538 662 8.0E-15 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 Gene3D G3DSA:3.40.50.300 500 679 1.5E-26 T 13-10-2018 CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 Gene3D G3DSA:3.40.50.300 191 338 6.7E-29 T 13-10-2018 CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 Gene3D G3DSA:3.40.50.300 345 499 1.1E-19 T 13-10-2018 CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 SUPERFAMILY SSF52540 195 676 2.43E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_15120 531f6c2ac406be1fbf3ad06f26a4d06b 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 488 4.0E-41 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CS348_19795 dde577bd8c9b0454a84b6f99df279f31 552 SUPERFAMILY SSF46785 22 68 6.62E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_19795 dde577bd8c9b0454a84b6f99df279f31 552 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 5.4E-42 T 13-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain CS348_19795 dde577bd8c9b0454a84b6f99df279f31 552 SUPERFAMILY SSF53850 121 547 7.78E-64 T 13-10-2018 CS348_19795 dde577bd8c9b0454a84b6f99df279f31 552 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 165 306 3.6E-20 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CS348_19795 dde577bd8c9b0454a84b6f99df279f31 552 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 552 64.991 T 13-10-2018 IPR023767 Transcriptional regulator SgrR CS348_19795 dde577bd8c9b0454a84b6f99df279f31 552 Gene3D G3DSA:3.40.190.10 114 312 1.0E-34 T 13-10-2018 CS348_19265 278c3496c5cbfa4f0fdc8bacfa99829c 989 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 113 279 2.0E-9 T 13-10-2018 IPR031161 Peptidase family M60 domain CS348_19265 278c3496c5cbfa4f0fdc8bacfa99829c 989 Pfam PF03272 Putative mucin or carbohydrate-binding module 535 627 4.1E-18 T 13-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain CS348_19265 278c3496c5cbfa4f0fdc8bacfa99829c 989 Pfam PF03272 Putative mucin or carbohydrate-binding module 870 983 1.6E-12 T 13-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain CS348_19265 278c3496c5cbfa4f0fdc8bacfa99829c 989 Pfam PF03272 Putative mucin or carbohydrate-binding module 729 842 2.5E-16 T 13-10-2018 IPR004954 Putative mucin/carbohydrate-binding domain CS348_19265 278c3496c5cbfa4f0fdc8bacfa99829c 989 SMART SM01276 29 330 1.2E-13 T 13-10-2018 IPR031161 Peptidase family M60 domain CS348_12405 3ce85b818c9c21c2e00514eece92f88e 308 SUPERFAMILY SSF56601 7 308 2.65E-113 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CS348_12405 3ce85b818c9c21c2e00514eece92f88e 308 Pfam PF04960 Glutaminase 24 308 1.4E-112 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CS348_12405 3ce85b818c9c21c2e00514eece92f88e 308 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 308 1.2E-129 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CS348_12405 3ce85b818c9c21c2e00514eece92f88e 308 Gene3D G3DSA:3.40.710.10 3 308 1.4E-110 T 13-10-2018 CS348_12405 3ce85b818c9c21c2e00514eece92f88e 308 Hamap MF_00313 Glutaminase [glsA]. 6 308 46.627 T 13-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 CS348_07025 aa769d4231a2546872fe849a5ca34b9d 109 Pfam PF07377 Protein of unknown function (DUF1493) 6 108 1.7E-36 T 13-10-2018 IPR010862 Protein of unknown function DUF1493 CS348_19185 4a88ed35e5d08592170d1579f59e031c 285 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 CS348_19185 4a88ed35e5d08592170d1579f59e031c 285 Pfam PF01148 Cytidylyltransferase family 4 278 1.2E-70 T 13-10-2018 CS348_05005 5ac2fb27527ac107bbbd0dc7df31eef7 187 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_05005 5ac2fb27527ac107bbbd0dc7df31eef7 187 PIRSF PIRSF004525 1 187 3.0E-67 T 13-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted CS348_05005 5ac2fb27527ac107bbbd0dc7df31eef7 187 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 26 3.3E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_05005 5ac2fb27527ac107bbbd0dc7df31eef7 187 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 27 7.6E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CS348_21960 ab1921c6c973dee288e02dea0906095d 117 Pfam PF13698 Domain of unknown function (DUF4156) 23 115 1.4E-30 T 13-10-2018 IPR025294 Protein of unknown function DUF4156 CS348_12390 76267bd04d4deaa4372a1073d4078ff6 180 Gene3D G3DSA:3.10.450.50 36 180 7.6E-49 T 13-10-2018 CS348_12390 76267bd04d4deaa4372a1073d4078ff6 180 SUPERFAMILY SSF54427 41 171 6.92E-20 T 13-10-2018 IPR032710 NTF2-like domain superfamily CS348_12390 76267bd04d4deaa4372a1073d4078ff6 180 Pfam PF14534 Domain of unknown function (DUF4440) 71 163 9.6E-10 T 13-10-2018 IPR027843 Domain of unknown function DUF4440 CS348_05580 59887ecded912e5db1995d03209109db 263 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 8 251 2.9E-79 T 13-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 CS348_05580 59887ecded912e5db1995d03209109db 263 Pfam PF01311 Bacterial export proteins, family 1 15 235 5.1E-49 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_05580 59887ecded912e5db1995d03209109db 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 200 219 3.7E-30 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_05580 59887ecded912e5db1995d03209109db 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 3.7E-30 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_05580 59887ecded912e5db1995d03209109db 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 3.7E-30 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_05580 59887ecded912e5db1995d03209109db 263 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 178 200 3.7E-30 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 CS348_02895 9faea5656c0b8a78a13949d2eb8dd80b 191 SMART SM00749 129 191 3.6E-6 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria CS348_02895 9faea5656c0b8a78a13949d2eb8dd80b 191 SMART SM00749 51 114 3.8E-12 T 13-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria CS348_02895 9faea5656c0b8a78a13949d2eb8dd80b 191 Pfam PF04972 BON domain 124 189 5.9E-17 T 13-10-2018 IPR007055 BON domain CS348_02895 9faea5656c0b8a78a13949d2eb8dd80b 191 Pfam PF04972 BON domain 46 113 2.6E-13 T 13-10-2018 IPR007055 BON domain CS348_14345 7871469831d9f8bbbe7f1d05729de7dc 211 Gene3D G3DSA:1.10.10.60 9 82 2.2E-27 T 13-10-2018 CS348_14345 7871469831d9f8bbbe7f1d05729de7dc 211 SUPERFAMILY SSF46689 12 82 3.13E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_14345 7871469831d9f8bbbe7f1d05729de7dc 211 Gene3D G3DSA:1.10.357.10 83 208 1.4E-30 T 13-10-2018 CS348_14345 7871469831d9f8bbbe7f1d05729de7dc 211 SUPERFAMILY SSF48498 92 206 2.82E-29 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CS348_14345 7871469831d9f8bbbe7f1d05729de7dc 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 6.2E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CS348_16210 84ea5d5151e219528a1bd735c8da5d80 86 SUPERFAMILY SSF159871 3 86 8.76E-26 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_16210 84ea5d5151e219528a1bd735c8da5d80 86 Gene3D G3DSA:3.30.1660.10 22 86 7.4E-18 T 13-10-2018 IPR025543 Dodecin-like CS348_16210 84ea5d5151e219528a1bd735c8da5d80 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 3.8E-17 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_23300 4db983173f9028469861c11aefd4c1af 161 Pfam PF06995 Phage P2 GpU 6 125 2.9E-43 T 13-10-2018 IPR009734 Myoviridae, GpU CS348_23300 4db983173f9028469861c11aefd4c1af 161 PIRSF PIRSF029208 1 154 9.1E-62 T 13-10-2018 IPR016912 Bacteriophage P2, GpU CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 194 206 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 97 110 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 168 179 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 6 21 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 PRINTS PR00732 Glycosyl hydrolase family 4 signature 75 91 5.9E-41 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 198 421 2.0E-62 T 13-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 CS348_22180 ba1767290e5593412370f09685a1f965 451 SUPERFAMILY SSF51735 5 171 8.79E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_22180 ba1767290e5593412370f09685a1f965 451 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 142 173 - T 13-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 Pfam PF02056 Family 4 glycosyl hydrolase 6 188 1.1E-79 T 13-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 CS348_22180 ba1767290e5593412370f09685a1f965 451 SUPERFAMILY SSF56327 172 449 2.09E-73 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CS348_22180 ba1767290e5593412370f09685a1f965 451 Gene3D G3DSA:3.90.1820.20 1 444 2.4E-139 T 13-10-2018 CS348_22680 436d7c849d0dc8773b0f8f65931bdea3 583 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 4.7E-246 T 13-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 CS348_22680 436d7c849d0dc8773b0f8f65931bdea3 583 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 43.551 T 13-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 CS348_22680 436d7c849d0dc8773b0f8f65931bdea3 583 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 9 573 0.0 T 13-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 CS348_22680 436d7c849d0dc8773b0f8f65931bdea3 583 PIRSF PIRSF000719 1 575 2.0E-294 T 13-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 Pfam PF07690 Major Facilitator Superfamily 17 406 3.6E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 15 39 4.7E-9 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 4.7E-9 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 4.7E-9 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 200 218 4.7E-9 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 397 416 4.7E-9 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 Gene3D G3DSA:1.20.1720.10 14 219 2.4E-46 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 SUPERFAMILY SSF103473 14 451 2.35E-58 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 Gene3D G3DSA:1.20.1250.20 254 457 3.6E-14 T 13-10-2018 CS348_24365 b0d8fc8a8f6ff064f74c048af1a4ad76 475 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 432 4.4E-79 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 CS348_05615 bc09f134ca18e692e6aef0f25e953856 82 SUPERFAMILY SSF47336 4 78 2.88E-14 T 13-10-2018 IPR036736 ACP-like superfamily CS348_05615 bc09f134ca18e692e6aef0f25e953856 82 Pfam PF00550 Phosphopantetheine attachment site 9 73 2.7E-6 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CS348_05615 bc09f134ca18e692e6aef0f25e953856 82 Gene3D G3DSA:1.10.1200.10 3 79 2.4E-18 T 13-10-2018 IPR036736 ACP-like superfamily CS348_05615 bc09f134ca18e692e6aef0f25e953856 82 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 36 76 0.001 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 Gene3D G3DSA:3.50.50.100 2 410 1.9E-119 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 1.6E-15 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 1.6E-15 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 1.6E-15 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.6E-15 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 2.6E-71 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 SUPERFAMILY SSF51905 7 352 1.36E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 2.4E-8 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.4E-8 T 13-10-2018 CS348_14355 e309a0214bfecbd65a8642cd2b27d0d6 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.4E-8 T 13-10-2018 CS348_13915 05aa51c63e89146531ffe3aee8136863 248 Pfam PF06629 MltA-interacting protein MipA 28 248 4.3E-53 T 13-10-2018 IPR010583 MltA-interacting MipA CS348_25300 1e3ba8cb866ccb07b12b82bc2c3e944a 171 Pfam PF07180 CaiF/GrlA transcriptional regulator 27 161 5.0E-24 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_25300 1e3ba8cb866ccb07b12b82bc2c3e944a 171 Gene3D G3DSA:1.10.10.10 24 118 6.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_25300 1e3ba8cb866ccb07b12b82bc2c3e944a 171 ProDom PD081346 TRANSCRIPTIONAL CAIF OPERON REGULATOR CAI ACTIVATOR TRANSCRIPTION ACTIVATORY FIX REGULATION 44 106 6.0E-5 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_23525 805a55b8aa342d8131a36739580dca19 435 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 22 429 4.8E-117 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 CS348_23525 805a55b8aa342d8131a36739580dca19 435 PIRSF PIRSF006066 6 435 1.5E-144 T 13-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 CS348_23525 805a55b8aa342d8131a36739580dca19 435 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 13 424 9.9E-122 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CS348_01925 395e9ea4163a10450e3db9de0cc1ab5a 152 Gene3D G3DSA:3.30.70.1290 3 136 1.0E-38 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 CS348_01925 395e9ea4163a10450e3db9de0cc1ab5a 152 SUPERFAMILY SSF143422 1 129 3.79E-44 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 CS348_01925 395e9ea4163a10450e3db9de0cc1ab5a 152 Pfam PF01797 Transposase IS200 like 12 129 1.5E-33 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CS348_01925 395e9ea4163a10450e3db9de0cc1ab5a 152 SMART SM01321 11 129 4.6E-36 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 CS348_15105 b1527dfe9aad3ab62130c694dd6ebbe8 138 Pfam PF13380 CoA binding domain 15 131 8.6E-40 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CS348_15105 b1527dfe9aad3ab62130c694dd6ebbe8 138 SMART SM00881 11 105 1.9E-25 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CS348_15105 b1527dfe9aad3ab62130c694dd6ebbe8 138 SUPERFAMILY SSF51735 5 136 2.01E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_15105 b1527dfe9aad3ab62130c694dd6ebbe8 138 Gene3D G3DSA:3.40.50.720 2 138 1.5E-44 T 13-10-2018 CS348_15745 9e39fee4e78c526365ef1b3951711d1d 322 Pfam PF13362 Toprim domain 215 306 9.0E-12 T 13-10-2018 IPR006171 TOPRIM domain CS348_15745 9e39fee4e78c526365ef1b3951711d1d 322 SUPERFAMILY SSF57783 8 91 5.95E-7 T 13-10-2018 CS348_15745 9e39fee4e78c526365ef1b3951711d1d 322 SMART SM00778 28 63 5.8E-14 T 13-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 CS348_15745 9e39fee4e78c526365ef1b3951711d1d 322 Pfam PF08273 Zinc-binding domain of primase-helicase 28 63 7.8E-14 T 13-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 CS348_11805 abe4e59098f1a5069e57fe4e3706e51a 253 SMART SM00062 30 248 2.1E-23 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_11805 abe4e59098f1a5069e57fe4e3706e51a 253 Gene3D G3DSA:3.40.190.10 31 236 3.1E-68 T 13-10-2018 CS348_11805 abe4e59098f1a5069e57fe4e3706e51a 253 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 239 1.0E-35 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_11805 abe4e59098f1a5069e57fe4e3706e51a 253 SUPERFAMILY SSF53850 9 239 7.32E-49 T 13-10-2018 CS348_11805 abe4e59098f1a5069e57fe4e3706e51a 253 Gene3D G3DSA:3.40.190.10 117 215 3.1E-68 T 13-10-2018 CS348_01115 b4f4d230d20f56cd686187704784eeff 63 Pfam PF11120 Cellulose biosynthesis protein BcsF 2 60 3.1E-31 T 13-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT CS348_01115 b4f4d230d20f56cd686187704784eeff 63 ProDom PD053231 YHJT MEMBRANE INNER BCSF 2 63 4.0E-29 T 13-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT CS348_01115 b4f4d230d20f56cd686187704784eeff 63 TIGRFAM TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT 2 63 1.9E-34 T 13-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 SUPERFAMILY SSF55729 707 866 1.89E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Gene3D G3DSA:3.30.1490.20 499 576 9.1E-56 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Pfam PF13549 ATP-grasp domain 473 694 1.3E-73 T 13-10-2018 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Gene3D G3DSA:3.30.470.20 479 690 9.1E-56 T 13-10-2018 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Gene3D G3DSA:3.40.630.30 717 885 5.7E-43 T 13-10-2018 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Pfam PF13380 CoA binding domain 13 129 2.2E-22 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 SMART SM00881 9 104 1.7E-23 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 SUPERFAMILY SSF56059 481 686 6.28E-27 T 13-10-2018 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 SUPERFAMILY SSF52210 287 447 1.57E-35 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Pfam PF00583 Acetyltransferase (GNAT) family 759 863 1.6E-9 T 13-10-2018 IPR000182 GNAT domain CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 SUPERFAMILY SSF52210 125 286 2.62E-35 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 4.7E-46 T 13-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Gene3D G3DSA:3.40.50.261 285 455 9.0E-43 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 SUPERFAMILY SSF51735 2 136 1.1E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Gene3D G3DSA:3.40.50.720 4 125 2.4E-31 T 13-10-2018 CS348_06540 5a61fcd59b8c4847b227ec00635068c8 886 Gene3D G3DSA:3.40.50.261 126 283 4.7E-48 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CS348_15550 b36e61bfc47ecb63bd79adbe29b79370 337 Gene3D G3DSA:3.40.50.720 1 335 2.5E-56 T 13-10-2018 CS348_15550 b36e61bfc47ecb63bd79adbe29b79370 337 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 234 1.7E-26 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_15550 b36e61bfc47ecb63bd79adbe29b79370 337 SUPERFAMILY SSF51735 1 335 1.29E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_16300 fe7dfa368c20c8388e28ea13f12de69f 150 SUPERFAMILY SSF54690 6 150 1.44E-53 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 CS348_16300 fe7dfa368c20c8388e28ea13f12de69f 150 Gene3D G3DSA:3.90.1170.40 1 150 6.7E-57 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 CS348_16300 fe7dfa368c20c8388e28ea13f12de69f 150 Pfam PF02391 MoaE protein 11 121 3.4E-36 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 CS348_19810 c2c2cbf467fd9c791831140f73121b92 235 SUPERFAMILY SSF52540 1 223 1.42E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_19810 c2c2cbf467fd9c791831140f73121b92 235 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_19810 c2c2cbf467fd9c791831140f73121b92 235 Pfam PF00005 ABC transporter 18 157 6.4E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_19810 c2c2cbf467fd9c791831140f73121b92 235 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 214 1.3E-109 T 13-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 CS348_19810 c2c2cbf467fd9c791831140f73121b92 235 SMART SM00382 24 209 1.1E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_19810 c2c2cbf467fd9c791831140f73121b92 235 Gene3D G3DSA:3.40.50.300 6 229 1.5E-61 T 13-10-2018 CS348_14100 37b486bdaa139c1436a50cb427fef936 176 SUPERFAMILY SSF81342 3 175 1.02E-27 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_14100 37b486bdaa139c1436a50cb427fef936 176 Pfam PF01292 Prokaryotic cytochrome b561 4 174 3.0E-20 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_04805 c29ef2f0eee767495968c2dae494ea37 268 Gene3D G3DSA:1.10.3670.10 53 175 3.0E-25 T 13-10-2018 CS348_04805 c29ef2f0eee767495968c2dae494ea37 268 Gene3D G3DSA:2.30.260.10 176 268 5.3E-23 T 13-10-2018 CS348_04805 c29ef2f0eee767495968c2dae494ea37 268 SUPERFAMILY SSF54001 40 267 2.75E-77 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CS348_04805 c29ef2f0eee767495968c2dae494ea37 268 Pfam PF07313 Protein of unknown function (DUF1460) 63 260 1.4E-76 T 13-10-2018 IPR010846 Protein of unknown function DUF1460 CS348_07110 0cb3398919ae0bf9d559c2eda2d074ee 395 Gene3D G3DSA:1.10.10.2840 251 380 3.6E-20 T 13-10-2018 CS348_07110 0cb3398919ae0bf9d559c2eda2d074ee 395 Pfam PF13556 PucR C-terminal helix-turn-helix domain 318 374 2.8E-19 T 13-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain CS348_07110 0cb3398919ae0bf9d559c2eda2d074ee 395 Pfam PF05651 Putative sugar diacid recognition 12 142 1.5E-51 T 13-10-2018 IPR008599 Putative sugar diacid recognition CS348_13140 4112078362cce8f4e75f0beafe39b599 70 Pfam PF10965 Protein of unknown function (DUF2767) 1 67 3.8E-32 T 13-10-2018 IPR024493 Fumarase D KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 CS348_13140 4112078362cce8f4e75f0beafe39b599 70 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 1 69 3.0E-34 T 13-10-2018 CS348_11510 74474fbd3d817a6c27b78d411578ce8a 104 SUPERFAMILY SSF52821 22 93 1.15E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_11510 74474fbd3d817a6c27b78d411578ce8a 104 Pfam PF00581 Rhodanese-like domain 23 93 6.6E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_11510 74474fbd3d817a6c27b78d411578ce8a 104 SMART SM00450 6 103 1.4E-10 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_11510 74474fbd3d817a6c27b78d411578ce8a 104 Gene3D G3DSA:3.40.250.10 20 104 1.5E-23 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_11510 74474fbd3d817a6c27b78d411578ce8a 104 TIGRFAM TIGR02981 phageshock_pspE: phage shock operon rhodanese PspE 3 103 3.3E-65 T 13-10-2018 IPR014323 Phage shock protein, PspE KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 CS348_20635 2d9b3502cdd399507ea54042e6ff8c8c 498 Pfam PF06074 Protein of unknown function (DUF935) 27 493 7.9E-135 T 13-10-2018 IPR009279 Protein of unknown function DUF935 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 2 552 4.8E-267 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 SUPERFAMILY SSF53067 5 284 3.02E-22 T 13-10-2018 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 291 501 3.0E-36 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 Gene3D G3DSA:3.30.420.40 5 526 4.5E-118 T 13-10-2018 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 Gene3D G3DSA:3.30.420.460 336 536 4.5E-118 T 13-10-2018 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 SUPERFAMILY SSF53067 285 543 8.74E-43 T 13-10-2018 CS348_19825 f1f296ecfa3273be42fe3abad8b93f4d 569 Hamap MF_00520 Ribulokinase [araB]. 1 558 61.83 T 13-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 CS348_09100 cc43ef20841daf7025af5a52df38c4c9 404 TIGRFAM TIGR04010 WcaD: putative colanic acid polymerase WcaD 1 404 5.2E-262 T 13-10-2018 IPR024013 Colanic acid biosynthesis, putative colanic acid polymerase, WcaD CS348_20770 44620fd8c97a693a76a8e526ba8a6096 129 Pfam PF08765 Mor transcription activator family 9 116 6.5E-43 T 13-10-2018 IPR014875 Mor transcription activator CS348_20770 44620fd8c97a693a76a8e526ba8a6096 129 Gene3D G3DSA:1.10.10.60 62 117 4.1E-16 T 13-10-2018 CS348_20770 44620fd8c97a693a76a8e526ba8a6096 129 SUPERFAMILY SSF46689 12 107 1.16E-25 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_14395 7459c0a1800637797956302df03a0a41 477 SUPERFAMILY SSF55604 401 474 1.7E-20 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_14395 7459c0a1800637797956302df03a0a41 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_14395 7459c0a1800637797956302df03a0a41 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 378 460 6.7E-24 T 13-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 CS348_14395 7459c0a1800637797956302df03a0a41 477 Gene3D G3DSA:3.30.1360.60 396 477 8.4E-32 T 13-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 CS348_14395 7459c0a1800637797956302df03a0a41 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 2.3E-84 T 13-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 CS348_14395 7459c0a1800637797956302df03a0a41 477 Pfam PF00367 phosphotransferase system, EIIB 405 436 2.6E-13 T 13-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 CS348_14395 7459c0a1800637797956302df03a0a41 477 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 52 331 2.6E-90 T 13-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 CS348_14395 7459c0a1800637797956302df03a0a41 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 7.6E-234 T 13-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 CS348_22485 97992e939f274d4f5ce7ee5392f74a89 436 SUPERFAMILY SSF56935 31 419 1.65E-5 T 13-10-2018 CS348_22485 97992e939f274d4f5ce7ee5392f74a89 436 Pfam PF13729 F plasmid transfer operon, TraF, protein 51 354 5.8E-85 T 13-10-2018 IPR032811 Putative conjugal transfer protein TraF-related CS348_24380 f6ecc73b87e2e3a19a26b94c914c0e61 296 Pfam PF13407 Periplasmic binding protein domain 29 281 1.1E-58 T 13-10-2018 IPR025997 Periplasmic binding protein CS348_24380 f6ecc73b87e2e3a19a26b94c914c0e61 296 SUPERFAMILY SSF53822 26 295 1.94E-88 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_24380 f6ecc73b87e2e3a19a26b94c914c0e61 296 Gene3D G3DSA:3.40.50.2300 31 281 1.4E-105 T 13-10-2018 CS348_24380 f6ecc73b87e2e3a19a26b94c914c0e61 296 Gene3D G3DSA:3.40.50.2300 127 262 1.4E-105 T 13-10-2018 CS348_12675 5da055efbb86cc7af3cee80c6d018738 111 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 21 111 5.0E-47 T 13-10-2018 IPR009707 Membrane protein GlpM/YdgC CS348_12675 5da055efbb86cc7af3cee80c6d018738 111 Pfam PF06942 GlpM protein 5 111 3.2E-52 T 13-10-2018 IPR009707 Membrane protein GlpM/YdgC CS348_14360 5102b4746b4b48345b6df64a550975cd 180 Gene3D G3DSA:3.40.50.1820 1 179 3.1E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_14360 5102b4746b4b48345b6df64a550975cd 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 6.4E-72 T 13-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA CS348_14360 5102b4746b4b48345b6df64a550975cd 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 55.171 T 13-10-2018 IPR022987 Uncharacterised protein family UPF0227 CS348_14360 5102b4746b4b48345b6df64a550975cd 180 SUPERFAMILY SSF53474 2 176 9.58E-9 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_03630 a4b85b7020334b421ec7eaa7747edfc1 421 Gene3D G3DSA:2.40.160.10 30 420 1.2E-14 T 13-10-2018 IPR023614 Porin domain superfamily CS348_02600 dddbfec1eaf7a0a7d8bd458179e82bc6 242 Pfam PF00912 Transglycosylase 59 227 2.2E-51 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_02600 dddbfec1eaf7a0a7d8bd458179e82bc6 242 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 11 233 39.74 T 13-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_02600 dddbfec1eaf7a0a7d8bd458179e82bc6 242 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 13 231 3.0E-85 T 13-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_02600 dddbfec1eaf7a0a7d8bd458179e82bc6 242 Gene3D G3DSA:1.10.3810.10 52 241 5.2E-54 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CS348_02600 dddbfec1eaf7a0a7d8bd458179e82bc6 242 SUPERFAMILY SSF53955 54 231 1.72E-61 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_13445 5711fe18838824b96b293db85f617172 172 Pfam PF13921 Myb-like DNA-binding domain 13 70 2.2E-6 T 13-10-2018 CS348_06295 eaa37a0e7425062df82efec15a08ddfc 372 Pfam PF03432 Relaxase/Mobilisation nuclease domain 10 257 9.1E-15 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 CS348_16945 99c1eed19493f7606872f89b5edff94d 224 Gene3D G3DSA:1.10.3720.10 2 224 2.3E-50 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16945 99c1eed19493f7606872f89b5edff94d 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 8.3E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16945 99c1eed19493f7606872f89b5edff94d 224 SUPERFAMILY SSF161098 14 210 4.19E-38 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16945 99c1eed19493f7606872f89b5edff94d 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 5.2E-24 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 CS348_02035 d44845a02f8ee59d1e9b327b0534f8f6 110 Gene3D G3DSA:3.90.470.10 1 110 1.0E-46 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02035 d44845a02f8ee59d1e9b327b0534f8f6 110 SUPERFAMILY SSF54843 1 109 4.06E-43 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 CS348_02035 d44845a02f8ee59d1e9b327b0534f8f6 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.067 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02035 d44845a02f8ee59d1e9b327b0534f8f6 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 4.1E-51 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_02035 d44845a02f8ee59d1e9b327b0534f8f6 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CS348_02035 d44845a02f8ee59d1e9b327b0534f8f6 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 7.6E-38 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CS348_02705 0b47f38df2fa79240b7ebd7d582b5044 95 SUPERFAMILY SSF47413 3 72 1.07E-28 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_02705 0b47f38df2fa79240b7ebd7d582b5044 95 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 81 3.8E-35 T 13-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain CS348_02705 0b47f38df2fa79240b7ebd7d582b5044 95 Gene3D G3DSA:1.10.260.40 2 72 3.7E-32 T 13-10-2018 CS348_25105 b2829d15674cb2a931b7c154cc020798 434 Pfam PF04917 Bacterial shufflon protein, N-terminal constant region 38 354 9.9E-107 T 13-10-2018 IPR007001 Bacterial shufflon protein, N-terminal CS348_01805 55bd00862ffd402d66536c9716eb65cc 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 106 2.5E-40 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CS348_01805 55bd00862ffd402d66536c9716eb65cc 108 SUPERFAMILY SSF50022 1 107 2.12E-36 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CS348_01805 55bd00862ffd402d66536c9716eb65cc 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 9.8E-40 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CS348_01805 55bd00862ffd402d66536c9716eb65cc 108 Gene3D G3DSA:2.102.10.10 1 108 3.9E-33 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CS348_12255 d296045a7bec8223e156702842b1bd74 67 Pfam PF01724 Domain of unknown function DUF29 3 64 5.8E-13 T 13-10-2018 IPR002636 Protein from unkown function DUF29 CS348_22760 e1402d93703078690c28aa97a07e0da6 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 1.1E-82 T 13-10-2018 IPR007338 Protein of unknown function DUF416 CS348_22760 e1402d93703078690c28aa97a07e0da6 196 Gene3D G3DSA:1.20.1590.10 3 195 7.2E-69 T 13-10-2018 IPR023381 YP001051499.1-like domain superfamily CS348_07725 0ab23a62af5d19b2c34ead406a1d1e86 269 Pfam PF01925 Sulfite exporter TauE/SafE 18 253 2.2E-43 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CS348_25115 9f704783a772a7b407a1798968698062 156 SUPERFAMILY SSF53955 15 153 2.87E-31 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_25115 9f704783a772a7b407a1798968698062 156 Pfam PF01464 Transglycosylase SLT domain 25 145 1.0E-21 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_25115 9f704783a772a7b407a1798968698062 156 Gene3D G3DSA:1.10.530.10 18 155 7.4E-19 T 13-10-2018 CS348_13540 a690ffa5138b7dbefc65fa38b677aeae 211 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 118 206 2.0E-10 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_13540 a690ffa5138b7dbefc65fa38b677aeae 211 Pfam PF05069 Phage virion morphogenesis family 7 66 2.6E-9 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_13540 a690ffa5138b7dbefc65fa38b677aeae 211 Pfam PF05069 Phage virion morphogenesis family 124 206 3.7E-13 T 13-10-2018 IPR006522 Phage virion morphogensis protein CS348_09660 14dc8b74eb269b272928dfe2e82603a5 100 Gene3D G3DSA:3.30.160.390 1 77 1.2E-22 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CS348_09660 14dc8b74eb269b272928dfe2e82603a5 100 Pfam PF13356 Arm DNA-binding domain 3 56 1.5E-8 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CS348_08260 fd27f51db561362d09e4def29bb80410 84 Gene3D G3DSA:3.10.20.30 2 84 1.6E-17 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CS348_08260 fd27f51db561362d09e4def29bb80410 84 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 CS348_08260 fd27f51db561362d09e4def29bb80410 84 SUPERFAMILY SSF54292 3 83 1.7E-21 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CS348_08260 fd27f51db561362d09e4def29bb80410 84 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 77 6.8E-11 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 Hamap MF_01987 Ribokinase [rbsK]. 1 301 25.776 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 SUPERFAMILY SSF53613 1 302 4.68E-82 T 13-10-2018 IPR029056 Ribokinase-like CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 PRINTS PR00990 Ribokinase signature 32 51 1.7E-29 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 PRINTS PR00990 Ribokinase signature 5 26 1.7E-29 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 PRINTS PR00990 Ribokinase signature 173 188 1.7E-29 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 PRINTS PR00990 Ribokinase signature 104 117 1.7E-29 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 PRINTS PR00990 Ribokinase signature 217 228 1.7E-29 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 Gene3D G3DSA:3.40.1190.20 1 305 2.3E-100 T 13-10-2018 IPR029056 Ribokinase-like CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 3 299 7.5E-113 T 13-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 CS348_00230 cc86381adccc08d7eb183664d53b2f21 306 Pfam PF00294 pfkB family carbohydrate kinase 2 294 3.9E-65 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_14945 dbf0f9670595a2c1bc9bd19010f1a86a 312 SMART SM00849 51 254 1.9E-4 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_14945 dbf0f9670595a2c1bc9bd19010f1a86a 312 Pfam PF12706 Beta-lactamase superfamily domain 64 277 2.1E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase CS348_14945 dbf0f9670595a2c1bc9bd19010f1a86a 312 Gene3D G3DSA:3.60.15.10 32 312 6.8E-63 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_14945 dbf0f9670595a2c1bc9bd19010f1a86a 312 SUPERFAMILY SSF56281 33 310 8.65E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CS348_03770 b024c8f62fbcc08ec542bfa1a7096213 240 PIRSF PIRSF028111 1 237 1.3E-46 T 13-10-2018 IPR016868 Bacteriophage B3, Orf5 CS348_03770 b024c8f62fbcc08ec542bfa1a7096213 240 Pfam PF10979 Protein of unknown function (DUF2786) 6 43 1.2E-13 T 13-10-2018 IPR024498 Domain of unknown function DUF2786 CS348_21640 72df11a4186d90948dc23278deeaaddc 308 SUPERFAMILY SSF103481 57 161 2.35E-14 T 13-10-2018 CS348_21640 72df11a4186d90948dc23278deeaaddc 308 Pfam PF00892 EamA-like transporter family 18 158 3.2E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_21640 72df11a4186d90948dc23278deeaaddc 308 Pfam PF00892 EamA-like transporter family 171 304 3.3E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_21640 72df11a4186d90948dc23278deeaaddc 308 SUPERFAMILY SSF103481 204 305 8.63E-9 T 13-10-2018 CS348_20975 2e828591aa49ad321961077d123c80e1 716 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 486 614 3.4E-34 T 13-10-2018 IPR025299 CstA, C-terminal domain CS348_20975 2e828591aa49ad321961077d123c80e1 716 Pfam PF02554 Carbon starvation protein CstA 34 405 4.5E-161 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 SMART SM00387 1 108 3.4E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 PRINTS PR00344 Bacterial sensor protein C-terminal signature 52 62 1.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 PRINTS PR00344 Bacterial sensor protein C-terminal signature 92 105 1.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 PRINTS PR00344 Bacterial sensor protein C-terminal signature 34 48 1.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 PRINTS PR00344 Bacterial sensor protein C-terminal signature 69 87 1.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 SUPERFAMILY SSF55874 2 106 2.36E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 2 106 7.6E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CS348_17405 0bfa622049cc36cc2105f6d0adc0ff0c 109 Gene3D G3DSA:3.30.565.10 1 108 9.4E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CS348_04865 40c7c70a882b69847c8dd8dd84477923 278 Pfam PF03824 High-affinity nickel-transport protein 14 277 5.1E-54 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 CS348_01420 3465e4be87e4d9cd1e38fc893602e36c 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 2.2E-70 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CS348_17065 655746be753a7c1c5abc0416e3c1be20 67 Pfam PF02416 mttA/Hcf106 family 4 48 4.9E-12 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 CS348_17065 655746be753a7c1c5abc0416e3c1be20 67 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 67 25.12 T 13-10-2018 IPR024905 Sec-independent protein translocase protein TatE CS348_17065 655746be753a7c1c5abc0416e3c1be20 67 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 67 20.528 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CS348_17065 655746be753a7c1c5abc0416e3c1be20 67 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 1.1E-20 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CS348_02905 6af2d1e71b9ac2f194cd21eb1d32d345 131 Gene3D G3DSA:3.40.1350.10 22 131 3.4E-31 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CS348_02905 6af2d1e71b9ac2f194cd21eb1d32d345 131 SUPERFAMILY SSF52980 17 125 7.62E-23 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CS348_02905 6af2d1e71b9ac2f194cd21eb1d32d345 131 Hamap MF_00048 UPF0102 protein YraN [yraN]. 16 128 23.684 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CS348_02905 6af2d1e71b9ac2f194cd21eb1d32d345 131 Pfam PF02021 Uncharacterised protein family UPF0102 24 114 1.1E-24 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CS348_02905 6af2d1e71b9ac2f194cd21eb1d32d345 131 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 16 131 5.4E-57 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CS348_03615 c54ad84be605f69c2461ea204ac41405 394 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 394 4.7E-232 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CS348_03615 c54ad84be605f69c2461ea204ac41405 394 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 394 226.336 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CS348_03615 c54ad84be605f69c2461ea204ac41405 394 SUPERFAMILY SSF51658 1 383 2.83E-80 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_03615 c54ad84be605f69c2461ea204ac41405 394 PIRSF PIRSF016049 1 393 1.3E-183 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CS348_03615 c54ad84be605f69c2461ea204ac41405 394 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 3.8E-165 T 13-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 CS348_03615 c54ad84be605f69c2461ea204ac41405 394 Gene3D G3DSA:3.20.20.150 174 393 4.4E-82 T 13-10-2018 CS348_03615 c54ad84be605f69c2461ea204ac41405 394 Gene3D G3DSA:3.20.20.150 1 173 2.0E-70 T 13-10-2018 CS348_23470 69a23a6daf41c62681abab993bcec4a9 90 Pfam PF10743 Regulatory phage protein cox 11 90 4.4E-30 T 13-10-2018 IPR019679 Regulatory phage protein Cox CS348_23470 69a23a6daf41c62681abab993bcec4a9 90 Gene3D G3DSA:1.10.1660.70 5 90 1.7E-35 T 13-10-2018 IPR038147 Cox superfamily CS348_22645 74323a6215136ff983e0426ee941508d 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 1.2E-57 T 13-10-2018 IPR018636 Protein of unknown function DUF2058 CS348_13935 10cefadce9692f10ef1649c95ba13ca6 175 Pfam PF04073 Aminoacyl-tRNA editing domain 33 157 7.2E-24 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CS348_13935 10cefadce9692f10ef1649c95ba13ca6 175 Gene3D G3DSA:3.90.960.10 12 165 1.2E-38 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_13935 10cefadce9692f10ef1649c95ba13ca6 175 SUPERFAMILY SSF55826 13 163 1.12E-33 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CS348_16980 681a90c9ff110055ff8d6f9cdfaf7659 113 SMART SM00858 29 104 3.8E-11 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CS348_16980 681a90c9ff110055ff8d6f9cdfaf7659 113 Gene3D G3DSA:3.90.1210.30 21 107 2.5E-27 T 13-10-2018 CS348_16980 681a90c9ff110055ff8d6f9cdfaf7659 113 Pfam PF08666 SAF domain 29 104 1.0E-15 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 CS348_11185 8edade7b7ce9a39705fb7127cad55b35 134 Pfam PF03692 Putative zinc- or iron-chelating domain 6 98 6.6E-11 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein CS348_04585 00c4aa8b082b173d202623d7bf08f7bf 235 Pfam PF02361 Cobalt transport protein 9 201 1.8E-6 T 13-10-2018 IPR003339 ABC/ECF transporter, transmembrane component CS348_23365 5973108ad98474d05e90dd64c537bde9 155 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 3.4E-41 T 13-10-2018 IPR009678 Bacteriophage tail completion protein R CS348_06875 13a4368e3ac149f9aedade733a9b9777 261 Pfam PF14581 SseB protein C-terminal domain 140 246 1.1E-30 T 13-10-2018 IPR027945 SseB protein, C-terminal CS348_06875 13a4368e3ac149f9aedade733a9b9777 261 Pfam PF07179 SseB protein N-terminal domain 11 122 7.1E-27 T 13-10-2018 IPR009839 SseB protein N-terminal domain CS348_14645 0eaed7e49e82f198345ebac873edc1d8 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 1.0E-44 T 13-10-2018 IPR025730 Biofilm regulator BssS CS348_14645 0eaed7e49e82f198345ebac873edc1d8 84 Pfam PF13991 BssS protein family 11 81 1.2E-32 T 13-10-2018 IPR025730 Biofilm regulator BssS CS348_18200 8f705e78f516f1fc13def4ea5d96e933 196 SUPERFAMILY SSF52317 5 188 7.37E-48 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_18200 8f705e78f516f1fc13def4ea5d96e933 196 Gene3D G3DSA:3.40.50.880 1 196 1.6E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CS348_18200 8f705e78f516f1fc13def4ea5d96e933 196 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 183 2.8E-63 T 13-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 CS348_18200 8f705e78f516f1fc13def4ea5d96e933 196 Pfam PF01965 DJ-1/PfpI family 4 170 9.6E-48 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CS348_10350 50f5ab3048ba72f1b8ce4b3b4a5afb4b 219 SUPERFAMILY SSF158682 88 213 4.58E-18 T 13-10-2018 IPR029024 TerB-like CS348_10350 50f5ab3048ba72f1b8ce4b3b4a5afb4b 219 Pfam PF04391 Protein of unknown function (DUF533) 33 209 1.9E-48 T 13-10-2018 IPR007486 Inner membrane protein YebE CS348_10350 50f5ab3048ba72f1b8ce4b3b4a5afb4b 219 Gene3D G3DSA:1.10.3680.10 78 217 9.2E-10 T 13-10-2018 IPR029024 TerB-like CS348_11420 e3f6e5703dea5775a33c78423fac4b1e 268 Pfam PF00005 ABC transporter 31 178 6.9E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_11420 e3f6e5703dea5775a33c78423fac4b1e 268 SMART SM00382 39 228 1.2E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_11420 e3f6e5703dea5775a33c78423fac4b1e 268 SUPERFAMILY SSF52540 5 251 3.24E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_11420 e3f6e5703dea5775a33c78423fac4b1e 268 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_11420 e3f6e5703dea5775a33c78423fac4b1e 268 Gene3D G3DSA:3.40.50.300 2 263 1.8E-72 T 13-10-2018 CS348_12235 a3b34dfcc1d179f1af69b117a9266d28 483 Pfam PF03553 Na+/H+ antiporter family 163 464 1.6E-52 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CS348_12235 a3b34dfcc1d179f1af69b117a9266d28 483 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 13 469 6.1E-156 T 13-10-2018 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 CS348_04200 2acf3f63b3572bb206f6ed3254c08843 130 TIGRFAM TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family 18 124 7.1E-39 T 13-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 CS348_04200 2acf3f63b3572bb206f6ed3254c08843 130 Pfam PF07511 Protein of unknown function (DUF1525) 18 122 3.3E-34 T 13-10-2018 IPR011090 Integrating conjugative element protein, PFL4709 CS348_25390 24b72c7dee339abe997d6253d42d90f0 117 Pfam PF05513 TraA 18 116 2.9E-13 T 13-10-2018 IPR008873 TraA GO:0000746|GO:0005576 CS348_16970 83bff90febedbf2e9ac9457baa7284da 317 Hamap MF_00070 2-keto-3-deoxygluconate permease [kdgT]. 1 311 40.272 T 13-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 CS348_16970 83bff90febedbf2e9ac9457baa7284da 317 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 14 304 6.0E-117 T 13-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 CS348_16970 83bff90febedbf2e9ac9457baa7284da 317 Pfam PF03812 2-keto-3-deoxygluconate permease 3 305 1.0E-119 T 13-10-2018 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 CS348_03735 6148d6a55ddb64aeaa234d03ef40330c 294 Pfam PF13614 AAA domain 3 145 4.2E-14 T 13-10-2018 IPR025669 AAA domain CS348_03735 6148d6a55ddb64aeaa234d03ef40330c 294 Gene3D G3DSA:3.40.50.300 1 281 4.4E-32 T 13-10-2018 CS348_03735 6148d6a55ddb64aeaa234d03ef40330c 294 SUPERFAMILY SSF52540 3 273 6.42E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_05460 7589e40af4c5a38de54fd067583a02e3 316 SUPERFAMILY SSF51735 1 309 4.37E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_05460 7589e40af4c5a38de54fd067583a02e3 316 Gene3D G3DSA:3.90.25.10 170 305 5.9E-114 T 13-10-2018 CS348_05460 7589e40af4c5a38de54fd067583a02e3 316 Gene3D G3DSA:3.40.50.720 6 295 5.9E-114 T 13-10-2018 CS348_05460 7589e40af4c5a38de54fd067583a02e3 316 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 212 5.1E-27 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CS348_01060 1b9f6debab4de3d13a3e83ea84f8a5fd 374 Gene3D G3DSA:2.130.10.10 159 348 7.4E-9 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CS348_01060 1b9f6debab4de3d13a3e83ea84f8a5fd 374 SUPERFAMILY SSF50998 25 337 5.89E-12 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CS348_01060 1b9f6debab4de3d13a3e83ea84f8a5fd 374 Pfam PF14269 Arylsulfotransferase (ASST) 100 336 4.5E-18 T 13-10-2018 IPR039535 Arylsulfotransferase-like CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 Gene3D G3DSA:3.40.50.2000 472 795 1.8E-151 T 13-10-2018 CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 PIRSF PIRSF000460 1 815 5.9E-236 T 13-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 13-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 13-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 Gene3D G3DSA:3.40.50.2000 8 471 4.8E-207 T 13-10-2018 CS348_01570 b5a2f1458f4af1a260212108c1eaebd9 815 SUPERFAMILY SSF53756 8 814 0.0 T 13-10-2018 CS348_07675 15a554ad86693ea04cf7e0a55e44efd0 437 Gene3D G3DSA:2.40.160.60 28 437 4.3E-162 T 13-10-2018 CS348_07675 15a554ad86693ea04cf7e0a55e44efd0 437 SUPERFAMILY SSF56935 28 437 8.24E-109 T 13-10-2018 CS348_07675 15a554ad86693ea04cf7e0a55e44efd0 437 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 19 437 2.4E-154 T 13-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) CS348_11810 64ddcfe14862a4cc4db2755562f1c8ee 114 Pfam PF06961 Protein of unknown function (DUF1294) 33 87 3.6E-24 T 13-10-2018 IPR010718 Protein of unknown function DUF1294 CS348_11810 64ddcfe14862a4cc4db2755562f1c8ee 114 PIRSF PIRSF002599 8 109 2.7E-16 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CS348_20360 8b370db9e32fd0a8362c35f3535303d8 21 Hamap MF_01907 thr operon leader peptide [thrL]. 1 21 11.501 T 13-10-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 CS348_20360 8b370db9e32fd0a8362c35f3535303d8 21 TIGRFAM TIGR02077 thr_lead_pep: thr operon leader peptide 1 21 5.4E-9 T 13-10-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 CS348_20360 8b370db9e32fd0a8362c35f3535303d8 21 Pfam PF08254 Threonine leader peptide 1 21 2.8E-8 T 13-10-2018 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 CS348_24025 cf924d2541557bb6cf7dfcb59c17ff64 155 Pfam PF03061 Thioesterase superfamily 57 145 6.7E-18 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CS348_24025 cf924d2541557bb6cf7dfcb59c17ff64 155 Gene3D G3DSA:3.10.129.10 2 155 3.9E-49 T 13-10-2018 CS348_24025 cf924d2541557bb6cf7dfcb59c17ff64 155 SUPERFAMILY SSF54637 12 154 2.8E-24 T 13-10-2018 IPR029069 HotDog domain superfamily CS348_24025 cf924d2541557bb6cf7dfcb59c17ff64 155 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 25 153 7.7E-14 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 CS348_19000 7cc0e0b01a53d416196fa08709985fac 256 SUPERFAMILY SSF53335 11 241 2.92E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_19000 7cc0e0b01a53d416196fa08709985fac 256 Pfam PF08241 Methyltransferase domain 49 145 2.9E-26 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CS348_19000 7cc0e0b01a53d416196fa08709985fac 256 Gene3D G3DSA:3.40.50.150 25 255 1.2E-53 T 13-10-2018 CS348_05180 635f8ebeb42cdbf74138fc100db82f8e 109 SUPERFAMILY SSF158452 1 106 3.92E-36 T 13-10-2018 IPR036814 YqcC-like superfamily CS348_05180 635f8ebeb42cdbf74138fc100db82f8e 109 Gene3D G3DSA:1.20.1440.40 1 105 3.5E-35 T 13-10-2018 IPR036814 YqcC-like superfamily CS348_05180 635f8ebeb42cdbf74138fc100db82f8e 109 Pfam PF04287 tRNA pseudouridine synthase C 7 103 8.2E-33 T 13-10-2018 IPR023376 YqcC-like domain CS348_05180 635f8ebeb42cdbf74138fc100db82f8e 109 PIRSF PIRSF006257 1 108 2.3E-38 T 13-10-2018 IPR007384 Protein of unknown function UCP006257 CS348_04535 a952f64b5ba16a8caadf6fc6d6e7eb7e 252 Pfam PF01435 Peptidase family M48 72 245 1.5E-25 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CS348_04535 a952f64b5ba16a8caadf6fc6d6e7eb7e 252 Gene3D G3DSA:3.30.2010.10 60 145 5.5E-11 T 13-10-2018 CS348_03820 a224345c355b1401755bf284beb386f7 181 SMART SM00506 1 136 2.3E-34 T 13-10-2018 IPR002589 Macro domain CS348_03820 a224345c355b1401755bf284beb386f7 181 Pfam PF01661 Macro domain 18 136 2.5E-28 T 13-10-2018 IPR002589 Macro domain CS348_03820 a224345c355b1401755bf284beb386f7 181 SUPERFAMILY SSF52949 2 172 1.28E-47 T 13-10-2018 CS348_03820 a224345c355b1401755bf284beb386f7 181 Gene3D G3DSA:3.40.220.10 1 174 2.9E-52 T 13-10-2018 CS348_15035 774d6b417534302bd42b46b8fc9e95aa 56 Pfam PF13132 Domain of unknown function (DUF3950) 21 50 3.8E-21 T 13-10-2018 IPR025030 Domain of unknown function DUF3950 CS348_03875 72b91649588a4f8547918beda27388e0 437 SUPERFAMILY SSF54826 132 221 4.06E-9 T 13-10-2018 CS348_03875 72b91649588a4f8547918beda27388e0 437 Pfam PF04917 Bacterial shufflon protein, N-terminal constant region 35 357 1.1E-170 T 13-10-2018 IPR007001 Bacterial shufflon protein, N-terminal CS348_23205 1afb0018ea2c3023228088457d6a0362 333 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 308 3.9E-48 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CS348_00485 f6698d80122f3d896c3531061a80e8e3 401 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.994 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CS348_00485 f6698d80122f3d896c3531061a80e8e3 401 Pfam PF03616 Sodium/glutamate symporter 3 366 5.0E-162 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CS348_00485 f6698d80122f3d896c3531061a80e8e3 401 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 397 5.2E-199 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CS348_24625 12ebe6aec4515dd89abb0c521b92e71a 326 Pfam PF01051 Initiator Replication protein 10 265 3.5E-30 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CS348_04685 b274024753444a960966cd6c31cd443f 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 391 1.1E-133 T 13-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CS348_04685 b274024753444a960966cd6c31cd443f 400 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 13-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 CS348_04685 b274024753444a960966cd6c31cd443f 400 Gene3D G3DSA:3.50.50.60 5 339 6.4E-136 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_04685 b274024753444a960966cd6c31cd443f 400 Gene3D G3DSA:3.30.9.50 80 270 6.4E-136 T 13-10-2018 CS348_04685 b274024753444a960966cd6c31cd443f 400 Pfam PF01494 FAD binding domain 4 345 9.7E-29 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CS348_04685 b274024753444a960966cd6c31cd443f 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 8.0E-19 T 13-10-2018 CS348_04685 b274024753444a960966cd6c31cd443f 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 8.0E-19 T 13-10-2018 CS348_04685 b274024753444a960966cd6c31cd443f 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 8.0E-19 T 13-10-2018 CS348_04685 b274024753444a960966cd6c31cd443f 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 8.0E-19 T 13-10-2018 CS348_04685 b274024753444a960966cd6c31cd443f 400 SUPERFAMILY SSF51905 4 385 5.78E-58 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CS348_07815 aa1294c3ce02ec2fe075c419be737be1 224 Pfam PF05036 Sporulation related domain 145 218 1.7E-11 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CS348_07815 aa1294c3ce02ec2fe075c419be737be1 224 Hamap MF_02022 Cell division protein DedD [dedD]. 14 223 23.885 T 13-10-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 CS348_07815 aa1294c3ce02ec2fe075c419be737be1 224 SUPERFAMILY SSF110997 144 221 6.41E-13 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CS348_22115 7db2bca6968a550471a3772fc023fec2 60 Gene3D G3DSA:3.40.50.300 1 59 7.2E-10 T 13-10-2018 CS348_22115 7db2bca6968a550471a3772fc023fec2 60 Pfam PF00005 ABC transporter 1 50 3.1E-9 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_22115 7db2bca6968a550471a3772fc023fec2 60 SUPERFAMILY SSF52540 2 54 8.49E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_23920 63d54ccb44ed6306732966623c8d13a7 162 Gene3D G3DSA:3.30.70.940 1 162 7.6E-63 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_23920 63d54ccb44ed6306732966623c8d13a7 162 SUPERFAMILY SSF82679 1 98 4.97E-28 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_23920 63d54ccb44ed6306732966623c8d13a7 162 Pfam PF02357 Transcription termination factor nusG 3 96 8.6E-20 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_23920 63d54ccb44ed6306732966623c8d13a7 162 SMART SM00738 1 100 2.6E-34 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_23920 63d54ccb44ed6306732966623c8d13a7 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 46.686 T 13-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 CS348_23920 63d54ccb44ed6306732966623c8d13a7 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 1.5E-66 T 13-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 CS348_03755 0937fca9bdb786693bce372608bd5286 599 SUPERFAMILY SSF110849 36 139 4.71E-9 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_03755 0937fca9bdb786693bce372608bd5286 599 TIGRFAM TIGR03764 ICE_PFGI_1_parB: integrating conjugative element, PFGI_1 class, ParB family protein 29 292 2.2E-116 T 13-10-2018 IPR022304 Integrating conjugative element, PFGI-1, ParB CS348_11610 111bd0f57af560c6ffddfdbe7f21c01f 185 Gene3D G3DSA:3.40.30.10 26 185 4.8E-19 T 13-10-2018 CS348_11610 111bd0f57af560c6ffddfdbe7f21c01f 185 Pfam PF08534 Redoxin 70 180 2.1E-6 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 CS348_11610 111bd0f57af560c6ffddfdbe7f21c01f 185 SUPERFAMILY SSF52833 32 180 2.08E-15 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_25825 ad49f059532c94d27931432f771c44c0 243 Pfam PF05818 Enterobacterial TraT complement resistance protein 32 243 1.9E-82 T 13-10-2018 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 CS348_25825 ad49f059532c94d27931432f771c44c0 243 PIRSF PIRSF002859 1 243 1.3E-137 T 13-10-2018 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 CS348_25110 0d3740173198b1e11621983e9c571f09 203 Pfam PF01478 Type IV leader peptidase family 65 172 1.1E-8 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CS348_05170 18a9a08e7994e285edacc6565419200b 181 Pfam PF07348 Syd protein (SUKH-2) 7 179 7.7E-71 T 13-10-2018 IPR009948 Syd GO:0009898 CS348_05170 18a9a08e7994e285edacc6565419200b 181 Hamap MF_01104 Protein Syd [syd]. 3 181 35.288 T 13-10-2018 IPR009948 Syd GO:0009898 CS348_05170 18a9a08e7994e285edacc6565419200b 181 Gene3D G3DSA:3.40.1580.20 1 181 3.2E-69 T 13-10-2018 IPR038228 Syd superfamily CS348_25540 2cf7300c7c8e2ecd8ec22db3e383ef8f 213 Gene3D G3DSA:3.40.50.300 1 209 1.1E-24 T 13-10-2018 CS348_25540 2cf7300c7c8e2ecd8ec22db3e383ef8f 213 SUPERFAMILY SSF52540 3 207 2.56E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_08095 25ea1fe8b64f238be24c702f1e1bf712 431 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 92 426 7.2E-119 T 13-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 CS348_08095 25ea1fe8b64f238be24c702f1e1bf712 431 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 429 29.867 T 13-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 CS348_08095 25ea1fe8b64f238be24c702f1e1bf712 431 SUPERFAMILY SSF56322 14 427 2.35E-98 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_08095 25ea1fe8b64f238be24c702f1e1bf712 431 Gene3D G3DSA:3.60.120.10 1 430 4.9E-152 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CS348_08095 25ea1fe8b64f238be24c702f1e1bf712 431 Pfam PF00425 chorismate binding enzyme 168 419 1.7E-62 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CS348_15675 c7d99814148d2f9986c6a235d16ca25f 409 TIGRFAM TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family 3 402 1.2E-95 T 13-10-2018 IPR024455 Phage capsid CS348_15675 c7d99814148d2f9986c6a235d16ca25f 409 Pfam PF05065 Phage capsid family 125 402 4.8E-63 T 13-10-2018 IPR024455 Phage capsid CS348_15675 c7d99814148d2f9986c6a235d16ca25f 409 SUPERFAMILY SSF56563 121 404 7.72E-58 T 13-10-2018 CS348_02860 d4fec82d772b484f549a74b4fcbbe371 331 Pfam PF01136 Peptidase family U32 76 330 2.5E-65 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_02860 d4fec82d772b484f549a74b4fcbbe371 331 SUPERFAMILY SSF51391 11 162 1.91E-5 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CS348_02860 d4fec82d772b484f549a74b4fcbbe371 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CS348_25800 43642f6d94acbdce9583e714c30a005d 181 Gene3D G3DSA:3.30.870.10 28 181 7.7E-41 T 13-10-2018 CS348_25800 43642f6d94acbdce9583e714c30a005d 181 SUPERFAMILY SSF56024 35 177 2.92E-35 T 13-10-2018 CS348_25800 43642f6d94acbdce9583e714c30a005d 181 Pfam PF13091 PLD-like domain 46 171 2.1E-22 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CS348_06090 5eaa78d70fdd0a5ffd1aacd47d8e9b5b 175 SMART SM00450 6 102 1.9E-17 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_06090 5eaa78d70fdd0a5ffd1aacd47d8e9b5b 175 Pfam PF11127 Protein of unknown function (DUF2892) 115 170 2.0E-9 T 13-10-2018 IPR021309 Protein of unknown function DUF2892 CS348_06090 5eaa78d70fdd0a5ffd1aacd47d8e9b5b 175 Gene3D G3DSA:3.40.250.10 5 109 4.0E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_06090 5eaa78d70fdd0a5ffd1aacd47d8e9b5b 175 SUPERFAMILY SSF52821 2 154 1.31E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CS348_06090 5eaa78d70fdd0a5ffd1aacd47d8e9b5b 175 Pfam PF00581 Rhodanese-like domain 8 99 2.1E-14 T 13-10-2018 IPR001763 Rhodanese-like domain CS348_13495 4a2f15ffa87610faa50dcce0fe643a5c 278 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 10 274 3.1E-87 T 13-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 CS348_19915 3850e317eb81093aaf1f9f300691babf 176 Hamap MF_01414 Glutathione-regulated potassium-efflux system ancillary protein KefF [kefF]. 1 173 52.328 T 13-10-2018 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CS348_19915 3850e317eb81093aaf1f9f300691babf 176 Gene3D G3DSA:3.40.50.360 1 176 1.4E-61 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_19915 3850e317eb81093aaf1f9f300691babf 176 Pfam PF02525 Flavodoxin-like fold 2 167 1.2E-39 T 13-10-2018 IPR003680 Flavodoxin-like fold CS348_19915 3850e317eb81093aaf1f9f300691babf 176 SUPERFAMILY SSF52218 2 170 7.68E-45 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_20385 9f61d2e5f6c54016034a25307f1d371f 223 Gene3D G3DSA:2.60.120.1460 17 219 4.7E-9 T 13-10-2018 CS348_20385 9f61d2e5f6c54016034a25307f1d371f 223 Pfam PF15977 Winged helix-turn-helix DNA binding 154 220 1.2E-27 T 13-10-2018 CS348_20385 9f61d2e5f6c54016034a25307f1d371f 223 SUPERFAMILY SSF51206 29 148 8.62E-5 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CS348_25350 c9f412b7590adfb489a67906cdae7a7d 217 Pfam PF12477 Sex factor F TraW protein N terminal 9 32 5.9E-6 T 13-10-2018 IPR025864 Type-F conjugative transfer system protein TraW N-terminal domain CS348_25350 c9f412b7590adfb489a67906cdae7a7d 217 TIGRFAM TIGR02743 TraW: type-F conjugative transfer system protein TraW 6 204 1.3E-68 T 13-10-2018 IPR014114 Type-F conjugative transfer system protein TraW CS348_14695 6dab6b0765bc30f0a55e57be2e6fba5b 124 Pfam PF13984 MsyB protein 3 124 1.3E-66 T 13-10-2018 IPR025729 MsyB protein CS348_14760 848aba5b9c7b97ed24332352d6e463f2 138 Pfam PF10614 Type VIII secretion system (T8SS), CsgF protein 6 129 4.6E-36 T 13-10-2018 IPR018893 Type VIII secretion system, CsgF CS348_09590 979305c18de8f7976a7eaf404a1842db 309 Gene3D G3DSA:2.40.440.10 19 303 1.3E-86 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_09590 979305c18de8f7976a7eaf404a1842db 309 Pfam PF03734 L,D-transpeptidase catalytic domain 97 230 1.1E-16 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CS348_09590 979305c18de8f7976a7eaf404a1842db 309 SUPERFAMILY SSF141523 96 231 4.84E-28 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CS348_23475 84faea4b42c0131c4b0a9eba3172273f 97 Pfam PF01381 Helix-turn-helix 7 50 7.6E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_23475 84faea4b42c0131c4b0a9eba3172273f 97 SMART SM00530 6 63 0.0011 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_23475 84faea4b42c0131c4b0a9eba3172273f 97 SUPERFAMILY SSF47413 5 53 5.63E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_23475 84faea4b42c0131c4b0a9eba3172273f 97 Gene3D G3DSA:1.10.260.40 1 97 2.5E-38 T 13-10-2018 CS348_11785 9ba497c02f4c7e43352a44ee4364fbfb 516 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 71 234 2.6E-13 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like CS348_06365 8040cb6c6f9b266bf107ea7ae7c2c253 158 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 23 148 1.9E-32 T 13-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 CS348_06365 8040cb6c6f9b266bf107ea7ae7c2c253 158 Gene3D G3DSA:3.30.530.20 15 156 2.9E-40 T 13-10-2018 IPR023393 START-like domain superfamily CS348_06365 8040cb6c6f9b266bf107ea7ae7c2c253 158 SUPERFAMILY SSF55961 14 156 3.17E-34 T 13-10-2018 CS348_14640 045b337ba6ad845ae63012c31b4db9e1 81 SUPERFAMILY SSF54857 1 80 1.96E-28 T 13-10-2018 IPR036687 DinI-like superfamily CS348_14640 045b337ba6ad845ae63012c31b4db9e1 81 Pfam PF06183 DinI-like family 14 78 3.3E-28 T 13-10-2018 IPR010391 DNA damage-inducible protein DinI-like CS348_14640 045b337ba6ad845ae63012c31b4db9e1 81 Gene3D G3DSA:3.30.910.10 1 81 5.7E-36 T 13-10-2018 IPR036687 DinI-like superfamily CS348_10775 5ca53b2859682b0306ccbafb1d435850 57 Pfam PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system 1 54 1.4E-34 T 13-10-2018 IPR012563 Gns CS348_02380 bbfa23baa3c94f8e0668ca2c919c5db4 1266 Pfam PF13502 AsmA-like C-terminal region 1010 1252 4.4E-62 T 13-10-2018 IPR032712 AsmA-like, C-terminal CS348_02380 bbfa23baa3c94f8e0668ca2c919c5db4 1266 Pfam PF13116 Protein of unknown function 504 786 2.8E-96 T 13-10-2018 IPR025263 Domain of unknown function DUF3971 CS348_02380 bbfa23baa3c94f8e0668ca2c919c5db4 1266 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 2 1262 0.0 T 13-10-2018 IPR011836 Conserved hypothetical protein CHP02099 CS348_18075 329e8b43df022e419d46d5314aa4cea6 351 Gene3D G3DSA:3.40.50.1100 24 323 6.6E-69 T 13-10-2018 CS348_18075 329e8b43df022e419d46d5314aa4cea6 351 SUPERFAMILY SSF53686 10 330 2.62E-70 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CS348_18075 329e8b43df022e419d46d5314aa4cea6 351 Gene3D G3DSA:3.40.50.1100 50 156 6.6E-69 T 13-10-2018 CS348_18075 329e8b43df022e419d46d5314aa4cea6 351 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 315 2.6E-42 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CS348_23500 c4d3d0467256a78585253d62b229761d 131 SUPERFAMILY SSF54427 5 124 6.01E-19 T 13-10-2018 IPR032710 NTF2-like domain superfamily CS348_23500 c4d3d0467256a78585253d62b229761d 131 Gene3D G3DSA:3.10.450.50 1 126 4.4E-13 T 13-10-2018 CS348_23500 c4d3d0467256a78585253d62b229761d 131 Pfam PF12680 SnoaL-like domain 22 113 6.5E-7 T 13-10-2018 IPR037401 SnoaL-like domain CS348_05780 a5019aa9968c968e383b12ebea99c658 608 Pfam PF00361 Proton-conducting membrane transporter 124 401 1.2E-37 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_05955 de56d7b0979dfd72a1a064a6b133eae5 141 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 22 110 0.005 T 13-10-2018 IPR020143 Uncharacterised protein family, RP436 CS348_05955 de56d7b0979dfd72a1a064a6b133eae5 141 Pfam PF09335 SNARE associated Golgi protein 25 131 1.2E-10 T 13-10-2018 IPR032816 SNARE associated Golgi protein CS348_21235 ebf94f1481b61151a8c5f985d2185731 167 Gene3D G3DSA:3.40.630.30 9 151 8.8E-28 T 13-10-2018 CS348_21235 ebf94f1481b61151a8c5f985d2185731 167 Pfam PF00583 Acetyltransferase (GNAT) family 49 144 4.4E-15 T 13-10-2018 IPR000182 GNAT domain CS348_21235 ebf94f1481b61151a8c5f985d2185731 167 SUPERFAMILY SSF55729 7 167 4.12E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_13025 3cdb791e8b896e734f069a375f995825 182 Pfam PF13327 Type III secretion system subunit 3 161 5.6E-61 T 13-10-2018 IPR025292 Type III secretion system protein CS348_10570 455b17c65dc2011427a9a9626ff482fb 427 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 17 417 4.0E-194 T 13-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type CS348_10570 455b17c65dc2011427a9a9626ff482fb 427 Pfam PF04403 Paraquat-inducible protein A 263 418 8.7E-43 T 13-10-2018 IPR007498 Intermembrane transport protein PqiA-like CS348_10570 455b17c65dc2011427a9a9626ff482fb 427 Pfam PF04403 Paraquat-inducible protein A 66 217 7.3E-38 T 13-10-2018 IPR007498 Intermembrane transport protein PqiA-like CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 SMART SM00116 78 127 4.2 T 13-10-2018 IPR000644 CBS domain CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 SMART SM00116 141 189 3.7 T 13-10-2018 IPR000644 CBS domain CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 Pfam PF00571 CBS domain 69 124 6.6E-8 T 13-10-2018 IPR000644 CBS domain CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 Pfam PF00571 CBS domain 143 189 9.9E-5 T 13-10-2018 IPR000644 CBS domain CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 SUPERFAMILY SSF54631 66 202 9.47E-32 T 13-10-2018 CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 Pfam PF03471 Transporter associated domain 206 281 6.6E-23 T 13-10-2018 IPR005170 Transporter-associated domain CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 Gene3D G3DSA:3.10.580.10 51 197 6.3E-56 T 13-10-2018 CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 Gene3D G3DSA:3.30.465.10 198 292 4.2E-36 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 SUPERFAMILY SSF56176 204 289 4.09E-24 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CS348_16920 8ddadf461ac97642b2d213a544d384dc 292 SMART SM01091 205 283 2.5E-31 T 13-10-2018 IPR005170 Transporter-associated domain CS348_14380 89f521ce43358cc168f75ebe744c1ec8 124 Pfam PF07233 Protein of unknown function (DUF1425) 33 123 1.2E-26 T 13-10-2018 IPR010824 Protein of unknown function DUF1425 CS348_14380 89f521ce43358cc168f75ebe744c1ec8 124 Gene3D G3DSA:2.60.40.3230 21 123 4.1E-16 T 13-10-2018 IPR038483 YcfL-like superfamily CS348_07930 f238fd933cd6013594b813583e3a3987 90 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 83 3.1E-17 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_07930 f238fd933cd6013594b813583e3a3987 90 Gene3D G3DSA:3.40.50.2300 1 89 1.5E-22 T 13-10-2018 CS348_07930 f238fd933cd6013594b813583e3a3987 90 SUPERFAMILY SSF52794 1 85 1.44E-21 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_03970 e36b193f215ccc613566d97275b3f297 166 TIGRFAM TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family 62 166 3.7E-40 T 13-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 CS348_03970 e36b193f215ccc613566d97275b3f297 166 Pfam PF11072 Protein of unknown function (DUF2859) 17 163 5.0E-50 T 13-10-2018 IPR021300 Integrating conjugative element protein, PFL4695 CS348_01910 1ad1cf645ad76dee06680de7db76a17c 72 Pfam PF04102 SlyX 6 72 4.0E-24 T 13-10-2018 IPR007236 SlyX CS348_01910 1ad1cf645ad76dee06680de7db76a17c 72 Gene3D G3DSA:1.20.5.300 1 52 1.6E-5 T 13-10-2018 CS348_01910 1ad1cf645ad76dee06680de7db76a17c 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 17.363 T 13-10-2018 IPR007236 SlyX CS348_16425 e4b54a2031d6ca2ee4ad130cc1006742 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 215 2.7E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_16425 e4b54a2031d6ca2ee4ad130cc1006742 229 SUPERFAMILY SSF161098 6 219 1.1E-51 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16425 e4b54a2031d6ca2ee4ad130cc1006742 229 Gene3D G3DSA:1.10.3720.10 2 225 1.1E-63 T 13-10-2018 IPR035906 MetI-like superfamily CS348_16425 e4b54a2031d6ca2ee4ad130cc1006742 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 221 2.1E-72 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 136 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 SUPERFAMILY SSF55031 179 286 1.94E-30 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 Gene3D G3DSA:3.40.630.10 8 362 6.4E-127 T 13-10-2018 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 7.8E-44 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 2.2E-175 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 Pfam PF07687 Peptidase dimerisation domain 175 282 2.3E-25 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 SUPERFAMILY SSF53187 5 373 6.81E-65 T 13-10-2018 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 Gene3D G3DSA:3.30.70.360 179 292 6.4E-127 T 13-10-2018 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 CS348_07165 0b8844938002bfe3e99a3cc879deb66b 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.408 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 CS348_07935 2cc09a00732802a599860ce010f8f9d8 463 Pfam PF03611 PTS system sugar-specific permease component 12 408 2.6E-149 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CS348_03715 97220165c4d55a6d913de0b94527f7d9 280 SUPERFAMILY SSF51621 7 233 5.58E-61 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_03715 97220165c4d55a6d913de0b94527f7d9 280 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 222 2.3E-33 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_03715 97220165c4d55a6d913de0b94527f7d9 280 PIRSF PIRSF015582 2 280 3.1E-77 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like CS348_03715 97220165c4d55a6d913de0b94527f7d9 280 Gene3D G3DSA:3.20.20.60 2 280 1.8E-84 T 13-10-2018 CS348_04075 e73b060d8a270a7923fe952f765c8804 164 ProDom PD081346 TRANSCRIPTIONAL CAIF OPERON REGULATOR CAI ACTIVATOR TRANSCRIPTION ACTIVATORY FIX REGULATION 37 140 6.0E-8 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_04075 e73b060d8a270a7923fe952f765c8804 164 Gene3D G3DSA:1.10.10.10 17 111 5.8E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_04075 e73b060d8a270a7923fe952f765c8804 164 Pfam PF07180 CaiF/GrlA transcriptional regulator 20 154 3.2E-28 T 13-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 CS348_03445 c8762ffc0785d4bb13986e568b369f0c 350 Pfam PF12883 Protein of unknown function (DUF3828) 25 141 7.6E-22 T 13-10-2018 IPR024289 Domain of unknown function DUF3828 CS348_03445 c8762ffc0785d4bb13986e568b369f0c 350 Pfam PF12883 Protein of unknown function (DUF3828) 277 324 0.0088 T 13-10-2018 IPR024289 Domain of unknown function DUF3828 CS348_17840 6ee2985e0b3daf75130deedae7cc670e 259 Pfam PF03649 Uncharacterised protein family (UPF0014) 9 245 1.2E-81 T 13-10-2018 IPR005226 UPF0014 family CS348_17840 6ee2985e0b3daf75130deedae7cc670e 259 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 6 251 5.7E-107 T 13-10-2018 IPR005226 UPF0014 family CS348_13085 db23e38ffc76e223485102f8122cfd57 196 SUPERFAMILY SSF116927 30 192 2.09E-53 T 13-10-2018 IPR035074 EspA/CesA-like CS348_13085 db23e38ffc76e223485102f8122cfd57 196 Pfam PF03433 EspA-like secreted protein 5 187 1.0E-64 T 13-10-2018 IPR005095 EspA-like secreted protein CS348_17795 7af6753bd830398f5f1628fc4396d6b2 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 215 9.2E-21 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_17795 7af6753bd830398f5f1628fc4396d6b2 219 SUPERFAMILY SSF161098 8 206 1.3E-40 T 13-10-2018 IPR035906 MetI-like superfamily CS348_17795 7af6753bd830398f5f1628fc4396d6b2 219 Gene3D G3DSA:1.10.3720.10 8 216 6.1E-44 T 13-10-2018 IPR035906 MetI-like superfamily CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 354 6.4E-121 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 PIRSF PIRSF001455 10 361 3.9E-106 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 356 74.13 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 Gene3D G3DSA:3.40.50.1970 1 172 1.8E-63 T 13-10-2018 CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 Pfam PF01761 3-dehydroquinate synthase 67 325 1.0E-108 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 Gene3D G3DSA:1.20.1090.10 173 362 1.8E-65 T 13-10-2018 CS348_01755 6ba15d2b8cbc498c9a226dc6bc1573e9 362 SUPERFAMILY SSF56796 4 356 1.57E-116 T 13-10-2018 CS348_25085 899e3271ba6bed445e0c8dfc62d64ce3 151 Pfam PF16816 DotD protein 50 141 3.8E-18 T 13-10-2018 IPR031817 DotD protein CS348_25085 899e3271ba6bed445e0c8dfc62d64ce3 151 Gene3D G3DSA:3.55.50.60 26 143 6.4E-9 T 13-10-2018 IPR038140 DotD superfamily CS348_10620 aced73f3c6287a713462a4685c84923e 47 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 1.3E-29 T 13-10-2018 IPR019672 Protein of unknown function DUF2627 CS348_17870 5264c85c7ea3edba6990dbe23f5fde04 275 Pfam PF07007 Lysozyme inhibitor LprI 193 271 1.5E-8 T 13-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal CS348_22370 061882cf5fb378b3a76062edea0cf2d7 533 Pfam PF12792 CSS motif domain associated with EAL 39 243 9.6E-44 T 13-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain CS348_22370 061882cf5fb378b3a76062edea0cf2d7 533 Gene3D G3DSA:3.20.20.450 272 521 1.1E-81 T 13-10-2018 IPR035919 EAL domain superfamily CS348_22370 061882cf5fb378b3a76062edea0cf2d7 533 Pfam PF00563 EAL domain 274 505 2.2E-64 T 13-10-2018 IPR001633 EAL domain CS348_22370 061882cf5fb378b3a76062edea0cf2d7 533 SUPERFAMILY SSF141868 274 519 1.96E-76 T 13-10-2018 IPR035919 EAL domain superfamily CS348_22370 061882cf5fb378b3a76062edea0cf2d7 533 SMART SM00052 267 511 8.3E-108 T 13-10-2018 IPR001633 EAL domain CS348_13675 618afc0ceecd4a39de79eb5692656390 319 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 55 318 3.2E-38 T 13-10-2018 IPR018707 Protein of unknown function DUF2219 CS348_13675 618afc0ceecd4a39de79eb5692656390 319 Gene3D G3DSA:2.40.128.140 24 319 5.7E-107 T 13-10-2018 IPR037107 Putative outer membrane protein superfamily CS348_21730 7f020904bec9b0704a5012d63011249d 106 SUPERFAMILY SSF159871 24 105 2.88E-20 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_21730 7f020904bec9b0704a5012d63011249d 106 Gene3D G3DSA:3.30.1660.10 47 106 5.7E-18 T 13-10-2018 IPR025543 Dodecin-like CS348_21730 7f020904bec9b0704a5012d63011249d 106 Pfam PF07338 Protein of unknown function (DUF1471) 50 105 1.9E-19 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_23445 0b6a8592e4c8c8f89fd9b2b7435e18b2 91 Pfam PF17399 Domain of unknown function (DUF5405) 6 86 1.4E-10 T 13-10-2018 IPR035404 Domain of unknown function DUF5405 CS348_23445 0b6a8592e4c8c8f89fd9b2b7435e18b2 91 ProDom PD029230 GPA 5'REGION GP83 ORF83 GENE GP45 BACTERIOPHAGE SIMILAR ORF4 3 78 4.0E-39 T 13-10-2018 IPR020284 Protein of unknown function CP83 CS348_15700 a66bcd0566d1edf8f2caa58051c57ec7 116 Gene3D G3DSA:3.30.40.60 32 116 5.5E-12 T 13-10-2018 CS348_15700 a66bcd0566d1edf8f2caa58051c57ec7 116 Pfam PF01844 HNH endonuclease 66 112 9.6E-17 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 CS348_15700 a66bcd0566d1edf8f2caa58051c57ec7 116 SMART SM00507 53 107 2.8E-11 T 13-10-2018 IPR003615 HNH nuclease CS348_14515 246b741fb3cd5b05658665e8dd93fc97 82 ProDom PD078424 YCEQ 1 82 3.0E-43 T 13-10-2018 IPR020371 Uncharacterised protein family YceQ CS348_14515 246b741fb3cd5b05658665e8dd93fc97 82 Pfam PF10848 Protein of unknown function (DUF2655) 1 82 4.8E-43 T 13-10-2018 IPR020371 Uncharacterised protein family YceQ CS348_05975 85177a0711e9bb82d4af3c94bb0d3b20 512 Pfam PF07690 Major Facilitator Superfamily 19 413 5.3E-54 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_05975 85177a0711e9bb82d4af3c94bb0d3b20 512 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 498 3.2E-215 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 CS348_05975 85177a0711e9bb82d4af3c94bb0d3b20 512 Gene3D G3DSA:1.20.1720.10 15 220 1.9E-45 T 13-10-2018 CS348_05975 85177a0711e9bb82d4af3c94bb0d3b20 512 SUPERFAMILY SSF103473 9 500 3.66E-71 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18855 a07145da7324031d1ed9c9b34d992c52 130 Pfam PF07087 Protein of unknown function (DUF1353) 18 109 9.8E-33 T 13-10-2018 IPR010767 Campylobacter phage CGC-2007, Cje0229 CS348_11730 ae0dc4803c8c9f84ca4c3f1b61b18137 136 Pfam PF03724 META domain 28 125 4.7E-20 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ CS348_11730 ae0dc4803c8c9f84ca4c3f1b61b18137 136 Gene3D G3DSA:2.40.128.270 34 131 1.9E-35 T 13-10-2018 IPR038670 HslJ-like superfamily CS348_21370 ea69d656de59ed7a381ca18a8ac24e89 246 Pfam PF07071 KDGP aldolase 8 224 1.7E-111 T 13-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_21370 ea69d656de59ed7a381ca18a8ac24e89 246 SUPERFAMILY SSF51569 51 205 4.76E-9 T 13-10-2018 CS348_21370 ea69d656de59ed7a381ca18a8ac24e89 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 242 1.8E-124 T 13-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 CS348_21370 ea69d656de59ed7a381ca18a8ac24e89 246 Gene3D G3DSA:3.20.20.70 1 245 7.6E-115 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_23170 e546dd7361362e9fa8aea98ff646933b 142 Pfam PF05656 Protein of unknown function (DUF805) 8 132 2.9E-18 T 13-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 CS348_01915 174a808eda20443133283215dbf13a72 272 Gene3D G3DSA:3.10.50.40 144 257 1.4E-41 T 13-10-2018 CS348_01915 174a808eda20443133283215dbf13a72 272 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 160 246 1.0E-27 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CS348_01915 174a808eda20443133283215dbf13a72 272 Gene3D G3DSA:1.10.287.460 26 143 2.3E-34 T 13-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 CS348_01915 174a808eda20443133283215dbf13a72 272 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 33 152 5.4E-36 T 13-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 CS348_01915 174a808eda20443133283215dbf13a72 272 SUPERFAMILY SSF54534 41 249 4.32E-65 T 13-10-2018 CS348_25400 3b7e4765736fe2234eaba1ac3e7ecfbb 130 Pfam PF05261 TraM protein, DNA-binding 1 94 1.3E-7 T 13-10-2018 IPR007925 Relaxosome protein TraM GO:0000746|GO:0003677 CS348_25400 3b7e4765736fe2234eaba1ac3e7ecfbb 130 SUPERFAMILY SSF47729 3 55 3.06E-5 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CS348_25400 3b7e4765736fe2234eaba1ac3e7ecfbb 130 Gene3D G3DSA:1.10.10.450 3 55 3.0E-8 T 13-10-2018 CS348_21400 c6a4740e3dcdc36ea6bf6fdbd8b37b66 120 Pfam PF14272 Glycine-rich SFCGS 4 117 4.1E-59 T 13-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 CS348_21400 c6a4740e3dcdc36ea6bf6fdbd8b37b66 120 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 7.2E-68 T 13-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 CS348_19815 845da34e4c75485b1abd1c6519e2d553 255 Pfam PF09335 SNARE associated Golgi protein 36 159 3.3E-19 T 13-10-2018 IPR032816 SNARE associated Golgi protein CS348_23385 215d7b74a3bca1daa16966a8847e9e89 98 Pfam PF04550 Phage holin family 2 1 86 7.1E-38 T 13-10-2018 IPR007633 Bacteriophage P2, GpY, holin CS348_23385 215d7b74a3bca1daa16966a8847e9e89 98 ProDom PD064783 PHAGE HOLIN LYSIS P2 MEMBRANE GPY Y TRANSMEMBRANE HOMOLOG INNER 1 88 1.0E-38 T 13-10-2018 IPR007633 Bacteriophage P2, GpY, holin CS348_21755 81a75e024eff7c7392532d63fb43be1d 227 Pfam PF10679 Protein of unknown function (DUF2491) 12 223 1.1E-59 T 13-10-2018 IPR019621 Protein of unknown function DUF2491 CS348_24835 ecf35ff3a8d15825d9637b0468abc89a 89 SUPERFAMILY SSF47413 1 53 9.6E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_24835 ecf35ff3a8d15825d9637b0468abc89a 89 Gene3D G3DSA:1.10.260.40 1 72 3.0E-10 T 13-10-2018 CS348_09230 a514fcd8b96ba60c7a44a95acaf5d262 254 Gene3D G3DSA:3.90.550.10 1 248 3.9E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09230 a514fcd8b96ba60c7a44a95acaf5d262 254 SUPERFAMILY SSF53448 2 222 5.4E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09230 a514fcd8b96ba60c7a44a95acaf5d262 254 Pfam PF00535 Glycosyl transferase family 2 4 151 6.2E-28 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_24160 8e3e65755ddbc6c79c41d9ccc74d8cce 359 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 355 4.6E-178 T 13-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 CS348_24160 8e3e65755ddbc6c79c41d9ccc74d8cce 359 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 359 63.813 T 13-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 343 495 3.1E-33 T 13-10-2018 IPR000160 GGDEF domain CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 Gene3D G3DSA:3.30.70.270 337 496 4.6E-35 T 13-10-2018 CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 Gene3D G3DSA:3.30.450.20 156 248 2.6E-5 T 13-10-2018 CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 SMART SM00267 333 497 1.9E-40 T 13-10-2018 IPR000160 GGDEF domain CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 Pfam PF17155 Gammaproteobacterial periplasmic sensor domain 31 304 7.3E-153 T 13-10-2018 IPR033420 Gammaproteobacterial periplasmic sensor domain GAPES1 CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 Pfam PF00990 Diguanylate cyclase, GGDEF domain 346 494 4.3E-35 T 13-10-2018 IPR000160 GGDEF domain CS348_13930 76eccceb0d1d4a321a289be8709b0b2b 497 SUPERFAMILY SSF55073 349 495 1.88E-32 T 13-10-2018 IPR029787 Nucleotide cyclase CS348_25125 25feeb81717cc5e8a799ebdfe4fad471 384 Gene3D G3DSA:1.20.81.30 43 160 4.5E-13 T 13-10-2018 CS348_25125 25feeb81717cc5e8a799ebdfe4fad471 384 Pfam PF00482 Type II secretion system (T2SS), protein F 255 373 3.2E-8 T 13-10-2018 IPR018076 Type II secretion system F domain CS348_25125 25feeb81717cc5e8a799ebdfe4fad471 384 Pfam PF00482 Type II secretion system (T2SS), protein F 57 179 2.5E-8 T 13-10-2018 IPR018076 Type II secretion system F domain CS348_25125 25feeb81717cc5e8a799ebdfe4fad471 384 Gene3D G3DSA:1.20.81.30 244 344 5.1E-5 T 13-10-2018 CS348_14010 43a5a6c39c1c314193020344904b43b3 212 Pfam PF01810 LysE type translocator 18 209 3.2E-52 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_14010 43a5a6c39c1c314193020344904b43b3 212 PIRSF PIRSF006324 4 212 3.2E-59 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_20600 c4dadc2de1fdc7393a7954e7da265910 154 Pfam PF09646 Gp37 protein 10 152 1.0E-63 T 13-10-2018 IPR018602 Gp37/putative cytoplasmic protein STM4215 CS348_20600 c4dadc2de1fdc7393a7954e7da265910 154 SUPERFAMILY SSF143749 1 136 2.88E-57 T 13-10-2018 IPR035934 Phage tail protein-like superfamily CS348_20600 c4dadc2de1fdc7393a7954e7da265910 154 Gene3D G3DSA:3.30.2000.10 1 137 1.2E-59 T 13-10-2018 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 Gene3D G3DSA:3.40.50.2300 69 324 5.8E-86 T 13-10-2018 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.4E-20 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 Gene3D G3DSA:1.10.260.40 3 59 2.8E-23 T 13-10-2018 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 Gene3D G3DSA:3.40.50.2300 163 292 5.8E-86 T 13-10-2018 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 13-10-2018 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.3E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.3E-6 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 SUPERFAMILY SSF53822 60 332 3.81E-89 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 SUPERFAMILY SSF47413 2 59 1.1E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 SMART SM00354 1 71 1.3E-34 T 13-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 CS348_24370 746d55ab49518d02aa26ba0f389eb06d 332 Pfam PF13377 Periplasmic binding protein-like domain 171 332 7.1E-42 T 13-10-2018 CS348_23210 b730cc3da18e6c7110d0571c3651d72a 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 301 1.2E-45 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CS348_10915 c62ec067ee71dd2ad64b28f7fc187dfd 92 Pfam PF10762 Protein of unknown function (DUF2583) 1 87 4.5E-47 T 13-10-2018 IPR019698 Protein of unknown function DUF2583 CS348_25470 f7821df69a0e78f94b55c78d8457c973 313 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 10 311 2.0E-82 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_25470 f7821df69a0e78f94b55c78d8457c973 313 Pfam PF04754 Putative transposase, YhgA-like 9 209 4.5E-86 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_24675 f7821df69a0e78f94b55c78d8457c973 313 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 10 311 2.0E-82 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_24675 f7821df69a0e78f94b55c78d8457c973 313 Pfam PF04754 Putative transposase, YhgA-like 9 209 4.5E-86 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_20665 a9fa6ba87db0afe4d8b6525bf7da544f 240 Pfam PF01464 Transglycosylase SLT domain 93 188 7.1E-14 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_20665 a9fa6ba87db0afe4d8b6525bf7da544f 240 SUPERFAMILY SSF53955 71 236 4.59E-33 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_20665 a9fa6ba87db0afe4d8b6525bf7da544f 240 Gene3D G3DSA:1.10.530.10 54 227 5.4E-32 T 13-10-2018 CS348_22400 4a79930e4203ff59599a61ef4251ee7e 462 Pfam PF01618 MotA/TolQ/ExbB proton channel family 111 211 1.0E-5 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CS348_14715 7019687e1ada7fa31a9bc6bb01a91e70 384 Hamap MF_01066 Glucans biosynthesis protein C [mdoC]. 1 375 36.121 T 13-10-2018 IPR023723 Glucan biosynthesis protein C GO:0016741 CS348_14715 7019687e1ada7fa31a9bc6bb01a91e70 384 Pfam PF01757 Acyltransferase family 10 356 7.0E-36 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 CS348_24115 b3e6bdb3a8bd84ad2aa665d2e024ca2b 389 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 36 363 5.2E-132 T 13-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX CS348_11515 2b63e07c0eac79a4c9b9f736973dcc90 467 Pfam PF04317 YcjX-like family, DUF463 22 466 1.7E-183 T 13-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein CS348_11515 2b63e07c0eac79a4c9b9f736973dcc90 467 PIRSF PIRSF019381 1 467 9.1E-219 T 13-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein CS348_17645 53774bc7d48821da80fad2015f635914 216 Pfam PF02498 BRO family, N-terminal domain 38 127 6.4E-8 T 13-10-2018 IPR003497 BRO N-terminal domain CS348_17645 53774bc7d48821da80fad2015f635914 216 SMART SM01040 32 132 5.2E-12 T 13-10-2018 IPR003497 BRO N-terminal domain CS348_12000 fc9971e5f183edbd9782a89d0cb1db1d 87 Pfam PF10753 Toxin GhoT_OrtT 34 87 2.8E-25 T 13-10-2018 IPR019689 Toxin GhoT/OrtT CS348_14965 945f6365b0c792ecce22863ce7b9471f 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 83 265 3.1E-6 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 CS348_14965 945f6365b0c792ecce22863ce7b9471f 267 Gene3D G3DSA:3.90.850.10 1 267 2.6E-81 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_14965 945f6365b0c792ecce22863ce7b9471f 267 SUPERFAMILY SSF56529 2 267 2.62E-76 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CS348_14965 945f6365b0c792ecce22863ce7b9471f 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 2.9E-139 T 13-10-2018 IPR012690 2-oxo-hepta-4-ene-1,7-dioic acid hydratase GO:0018817|GO:0019439 CS348_24395 f7fdac1bba840ddde6cba39c633a2f70 139 Gene3D G3DSA:3.40.1650.10 8 136 7.7E-38 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CS348_24395 f7fdac1bba840ddde6cba39c633a2f70 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 2.1E-47 T 13-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CS348_24395 f7fdac1bba840ddde6cba39c633a2f70 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 33.003 T 13-10-2018 IPR023064 D-ribose pyranase GO:0016872 CS348_24395 f7fdac1bba840ddde6cba39c633a2f70 139 SUPERFAMILY SSF102546 1 139 3.27E-44 T 13-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 CS348_12055 f5ddbd34176f108880841b173139688f 73 Gene3D G3DSA:2.30.30.100 19 73 4.3E-26 T 13-10-2018 CS348_12055 f5ddbd34176f108880841b173139688f 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 70 2.9E-23 T 13-10-2018 IPR010305 Protein of unknown function DUF903 CS348_12055 f5ddbd34176f108880841b173139688f 73 SUPERFAMILY SSF50182 22 71 5.34E-18 T 13-10-2018 IPR010920 LSM domain superfamily CS348_21695 d9032b3c1793c984990e0001a063639f 154 Gene3D G3DSA:3.40.930.10 1 153 6.3E-55 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_21695 d9032b3c1793c984990e0001a063639f 154 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 53 69 - T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_21695 d9032b3c1793c984990e0001a063639f 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 148 1.4E-33 T 13-10-2018 IPR002178 PTS EIIA type-2 domain CS348_21695 d9032b3c1793c984990e0001a063639f 154 SUPERFAMILY SSF55804 6 148 1.22E-36 T 13-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 CS348_02935 f2d161d731fd6b29ac1655beb6586355 94 SUPERFAMILY SSF52794 3 92 3.27E-17 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_02935 f2d161d731fd6b29ac1655beb6586355 94 Gene3D G3DSA:3.40.50.2300 2 94 6.0E-29 T 13-10-2018 CS348_02935 f2d161d731fd6b29ac1655beb6586355 94 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 4 84 5.7E-12 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_11490 f711abca655f431b5b9496fc5082e295 222 Pfam PF04012 PspA/IM30 family 2 216 3.7E-47 T 13-10-2018 IPR007157 PspA/IM30 CS348_11490 f711abca655f431b5b9496fc5082e295 222 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 219 2.8E-92 T 13-10-2018 IPR014319 Phage shock protein, PspA CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 SMART SM00876 220 312 1.1E-48 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 1.8E-125 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 Pfam PF04055 Radical SAM superfamily 50 201 2.4E-18 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 SUPERFAMILY SSF102114 6 313 1.31E-94 T 13-10-2018 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 Gene3D G3DSA:3.20.20.70 4 315 3.6E-137 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 1.7E-20 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.75 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 SMART SM00729 43 255 1.3E-42 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CS348_16365 34a91677dbc8530cbdce03ecb5f788de 346 PIRSF PIRSF001619 1 319 5.9E-140 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CS348_01505 8fd2885488ddf9f2b9075bdd608f9402 162 Pfam PF00583 Acetyltransferase (GNAT) family 34 136 1.1E-14 T 13-10-2018 IPR000182 GNAT domain CS348_01505 8fd2885488ddf9f2b9075bdd608f9402 162 SUPERFAMILY SSF55729 4 161 5.93E-38 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_01505 8fd2885488ddf9f2b9075bdd608f9402 162 Gene3D G3DSA:3.40.630.30 2 162 3.5E-43 T 13-10-2018 CS348_04310 28bbe4a32464bd9841fe6d35856e6b18 151 Pfam PF03625 Domain of unknown function DUF302 60 120 2.2E-16 T 13-10-2018 IPR005180 Domain of unknown function DUF302 CS348_04310 28bbe4a32464bd9841fe6d35856e6b18 151 SUPERFAMILY SSF103247 30 147 3.92E-27 T 13-10-2018 IPR035923 TT1751-like domain superfamily CS348_04310 28bbe4a32464bd9841fe6d35856e6b18 151 Gene3D G3DSA:3.30.310.70 27 150 2.0E-11 T 13-10-2018 IPR035923 TT1751-like domain superfamily CS348_15945 105b6e8c2fff74e380311d20b2ea1369 240 Gene3D G3DSA:3.40.109.10 1 240 4.6E-75 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CS348_15945 105b6e8c2fff74e380311d20b2ea1369 240 SUPERFAMILY SSF55469 1 239 2.09E-73 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CS348_15945 105b6e8c2fff74e380311d20b2ea1369 240 Pfam PF00881 Nitroreductase family 11 159 3.7E-18 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CS348_15945 105b6e8c2fff74e380311d20b2ea1369 240 PIRSF PIRSF005426 1 240 4.6E-83 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 CS348_12365 4db8f5a86b1aff420ec2b47100dfde67 136 SUPERFAMILY SSF52833 6 125 6.16E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_12365 4db8f5a86b1aff420ec2b47100dfde67 136 Gene3D G3DSA:3.40.30.10 9 131 1.4E-32 T 13-10-2018 CS348_12365 4db8f5a86b1aff420ec2b47100dfde67 136 Pfam PF07449 Hydrogenase-1 expression protein HyaE 13 114 1.6E-39 T 13-10-2018 IPR010893 [NiFe]-hydrogenase maturation factor HyaE CS348_16785 cae2f7c6b7a9ee9f525348d79cfae328 97 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 87 5.2E-8 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 CS348_02565 7ce249064fc80c8a890aa6210876ad3f 367 Pfam PF06250 Protein of unknown function (DUF1016) 20 345 2.5E-111 T 13-10-2018 IPR009362 Protein of unknown function DUF1016 CS348_23530 e663d7b95681d7ba5993028b4c496030 227 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 16 227 5.3E-96 T 13-10-2018 IPR009331 Oligogalacturonate-specific porin CS348_23530 e663d7b95681d7ba5993028b4c496030 227 Gene3D G3DSA:2.40.160.40 23 227 1.3E-61 T 13-10-2018 CS348_23530 e663d7b95681d7ba5993028b4c496030 227 SUPERFAMILY SSF56935 36 227 4.85E-7 T 13-10-2018 CS348_07730 894b5b7e1e7e9397c3ad9fcd47757df4 182 Pfam PF04315 Elongation factor P hydroxylase 13 175 4.4E-82 T 13-10-2018 IPR007411 Elongation factor P hydroxylase CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 SUPERFAMILY SSF103473 16 489 3.79E-29 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 489 49.386 T 13-10-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0016020|GO:1904680 CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 Gene3D G3DSA:1.20.1250.20 11 486 2.3E-112 T 13-10-2018 CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 17 485 9.1E-138 T 13-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 77 101 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 152 164 - T 13-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 CS348_12805 e7261cdbeea1976e3528abd7332d2406 501 Pfam PF00854 POT family 89 445 7.0E-91 T 13-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 CS348_17755 ea3341879e7f6601414f1ce0c3291119 274 Pfam PF09916 Uncharacterized protein conserved in bacteria (DUF2145) 47 245 1.2E-66 T 13-10-2018 IPR014547 Uncharacterised conserved protein UCP028477 CS348_17755 ea3341879e7f6601414f1ce0c3291119 274 PIRSF PIRSF028477 1 274 3.4E-125 T 13-10-2018 IPR014547 Uncharacterised conserved protein UCP028477 CS348_13830 e543d56d12a374d6a83f3d7a514b3708 91 Pfam PF07383 Protein of unknown function (DUF1496) 38 90 1.2E-25 T 13-10-2018 IPR009971 Protein of unknown function DUF1496 CS348_24120 3bb4911d5b3cc1cddce69b4540e10434 398 SUPERFAMILY SSF48452 95 383 9.5E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_24120 3bb4911d5b3cc1cddce69b4540e10434 398 Pfam PF07719 Tetratricopeptide repeat 329 360 4.0E-6 T 13-10-2018 IPR013105 Tetratricopeptide repeat 2 CS348_24120 3bb4911d5b3cc1cddce69b4540e10434 398 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 4 386 9.7E-117 T 13-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 CS348_24120 3bb4911d5b3cc1cddce69b4540e10434 398 Gene3D G3DSA:1.25.40.10 304 396 4.5E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_24120 3bb4911d5b3cc1cddce69b4540e10434 398 Gene3D G3DSA:1.25.40.10 61 300 1.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_24120 3bb4911d5b3cc1cddce69b4540e10434 398 Pfam PF07219 HemY protein N-terminus 26 132 4.5E-36 T 13-10-2018 IPR010817 HemY, N-terminal CS348_12495 844388b0f37d8929a9f6d92780407980 67 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 1 65 6.4E-39 T 13-10-2018 IPR017704 Putative selenium-binding protein YdfZ CS348_12495 844388b0f37d8929a9f6d92780407980 67 Pfam PF14001 YdfZ protein 2 65 6.5E-34 T 13-10-2018 IPR017704 Putative selenium-binding protein YdfZ CS348_15900 9579be439bcc676d99887c99af135d98 447 Pfam PF03611 PTS system sugar-specific permease component 18 412 5.4E-100 T 13-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 CS348_21200 24c6436183b523b64e674139ecbf63fe 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 2.6E-117 T 13-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 CS348_21200 24c6436183b523b64e674139ecbf63fe 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 343 1.7E-72 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 CS348_03325 e9994626a858ca8173f6c6a555c87162 140 Pfam PF06853 Protein of unknown function (DUF1249) 21 134 1.1E-41 T 13-10-2018 IPR009659 Protein of unknown function DUF1249 CS348_03075 ac4b9a9f13210fd1d57037acc68dca89 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 1.2E-30 T 13-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 CS348_20410 d6b664b53af18d7ece5f0da7c065287f 361 Gene3D G3DSA:2.60.40.1090 202 361 2.3E-21 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_20410 d6b664b53af18d7ece5f0da7c065287f 361 Pfam PF00419 Fimbrial protein 202 361 2.9E-13 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_20410 d6b664b53af18d7ece5f0da7c065287f 361 SUPERFAMILY SSF49401 205 361 8.95E-15 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_10275 098e912419d43229bc65fb257ae272d4 261 Pfam PF00950 ABC 3 transport family 1 257 8.4E-89 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CS348_10275 098e912419d43229bc65fb257ae272d4 261 SUPERFAMILY SSF81345 3 257 5.75E-42 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_10275 098e912419d43229bc65fb257ae272d4 261 Gene3D G3DSA:1.10.3470.10 31 261 1.8E-9 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_16820 01fea4dc1e82ca702910586e8210e0dc 110 Pfam PF13982 YbfN-like lipoprotein 21 107 7.6E-47 T 13-10-2018 IPR025727 YbfN-like lipoprotein CS348_22785 2a77c397c8e01930ba57f5ca0eabb667 631 Pfam PF13667 ThiC-associated domain 27 108 3.7E-34 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CS348_22785 2a77c397c8e01930ba57f5ca0eabb667 631 Pfam PF01964 Radical SAM ThiC family 148 596 1.6E-199 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CS348_22785 2a77c397c8e01930ba57f5ca0eabb667 631 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 147 599 1.7E-223 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CS348_22785 2a77c397c8e01930ba57f5ca0eabb667 631 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 147 600 100.126 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CS348_22785 2a77c397c8e01930ba57f5ca0eabb667 631 Gene3D G3DSA:3.20.20.540 218 531 1.9E-154 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CS348_20905 879ec0d3970eab8b690a615e31378db5 303 Pfam PF06738 Putative threonine/serine exporter 58 297 3.5E-67 T 13-10-2018 IPR010619 Putative threonine/serine exporter CS348_12415 26565708b417f907f6a2123f0358740c 290 Pfam PF03466 LysR substrate binding domain 85 286 1.1E-45 T 13-10-2018 IPR005119 LysR, substrate-binding CS348_12415 26565708b417f907f6a2123f0358740c 290 SUPERFAMILY SSF53850 86 288 5.16E-39 T 13-10-2018 CS348_12415 26565708b417f907f6a2123f0358740c 290 Gene3D G3DSA:3.40.190.290 89 289 3.6E-35 T 13-10-2018 CS348_12415 26565708b417f907f6a2123f0358740c 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.1E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CS348_12415 26565708b417f907f6a2123f0358740c 290 SUPERFAMILY SSF46785 1 109 2.94E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CS348_12415 26565708b417f907f6a2123f0358740c 290 Gene3D G3DSA:1.10.10.10 1 88 4.8E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_16245 4a5c2548cf3c50f37a41030a3e56f4bc 376 Pfam PF12698 ABC-2 family transporter protein 28 369 4.4E-40 T 13-10-2018 CS348_00650 f850ffdb2f0f853ea0c621f76ff531eb 404 Pfam PF04932 O-Antigen ligase 195 339 6.4E-14 T 13-10-2018 IPR007016 O-antigen ligase-related CS348_08040 cabfb2d33541a8f222d5334e9cd02740 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08040 cabfb2d33541a8f222d5334e9cd02740 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08040 cabfb2d33541a8f222d5334e9cd02740 325 Pfam PF00146 NADH dehydrogenase 17 317 4.4E-121 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_08040 cabfb2d33541a8f222d5334e9cd02740 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 24.062 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 Gene3D G3DSA:1.10.8.630 2 113 4.4E-40 T 13-10-2018 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 SMART SM00490 492 589 6.0E-9 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 Gene3D G3DSA:3.40.50.300 184 379 2.0E-84 T 13-10-2018 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 Pfam PF00270 DEAD/DEAH box helicase 204 362 6.8E-16 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 Pfam PF00271 Helicase conserved C-terminal domain 522 589 2.7E-5 T 13-10-2018 IPR001650 Helicase, C-terminal CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 Gene3D G3DSA:3.40.50.300 404 625 1.9E-16 T 13-10-2018 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 732 26.051 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 TIGRFAM TIGR00595 priA: primosomal protein N' 221 730 3.1E-215 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 SMART SM00487 195 391 9.1E-20 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CS348_23110 447eee3d9212959c1ee1f361fb7f0860 732 SUPERFAMILY SSF52540 212 601 2.04E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_17510 dca1c0b869c1cc2cf7e5f3fad16e5be5 194 PIRSF PIRSF004395 1 194 1.2E-80 T 13-10-2018 IPR010633 Bacteriophage lambda, GpZ, minor tail CS348_17510 dca1c0b869c1cc2cf7e5f3fad16e5be5 194 Pfam PF06763 Prophage minor tail protein Z (GPZ) 3 194 2.5E-80 T 13-10-2018 IPR010633 Bacteriophage lambda, GpZ, minor tail CS348_01900 95b485bcdbbe3ab1b12f0a65e80e63a8 66 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 58 1.0E-18 T 13-10-2018 IPR012658 Conserved hypothetical protein CHP02443 CS348_01900 95b485bcdbbe3ab1b12f0a65e80e63a8 66 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 3 60 2.6E-32 T 13-10-2018 IPR012658 Conserved hypothetical protein CHP02443 CS348_02300 3251a2340601d9e955d23c9805f71a89 293 SUPERFAMILY SSF53335 42 291 1.13E-44 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CS348_02300 3251a2340601d9e955d23c9805f71a89 293 Gene3D G3DSA:3.40.50.150 101 293 5.0E-57 T 13-10-2018 CS348_02300 3251a2340601d9e955d23c9805f71a89 293 PIRSF PIRSF000401 1 293 1.3E-94 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CS348_02300 3251a2340601d9e955d23c9805f71a89 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 33.629 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CS348_02300 3251a2340601d9e955d23c9805f71a89 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 9.8E-126 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CS348_02300 3251a2340601d9e955d23c9805f71a89 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 1.4E-105 T 13-10-2018 CS348_01720 b26e36af715aa2c673f73cc8eb717cd5 179 Pfam PF05137 Fimbrial assembly protein (PilN) 98 143 2.9E-7 T 13-10-2018 IPR007813 Fimbrial assembly PilN CS348_02960 2960794d6082195e4bb706ecf39babd2 256 Hamap MF_01291 5-keto-4-deoxy-D-glucarate aldolase [garL]. 1 256 68.613 T 13-10-2018 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20 CS348_02960 2960794d6082195e4bb706ecf39babd2 256 TIGRFAM TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase 8 256 2.1E-145 T 13-10-2018 IPR017648 5-keto-4-deoxy-D-glucarate aldolase GO:0008672|GO:0019394 KEGG: 00053+4.1.2.20 CS348_02960 2960794d6082195e4bb706ecf39babd2 256 Gene3D G3DSA:3.20.20.60 2 256 1.5E-86 T 13-10-2018 CS348_02960 2960794d6082195e4bb706ecf39babd2 256 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 20 243 1.6E-61 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_02960 2960794d6082195e4bb706ecf39babd2 256 SUPERFAMILY SSF51621 3 255 4.0E-83 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_04020 c4d50be60e1d85e4e0a41d190616bdb5 494 TIGRFAM TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family 5 480 2.8E-172 T 13-10-2018 IPR021207 Integrating conjugative element protein, PFL4705 CS348_04020 c4d50be60e1d85e4e0a41d190616bdb5 494 Pfam PF03743 Bacterial conjugation TrbI-like protein 350 466 2.1E-6 T 13-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI CS348_07735 6f28b1f138ad95aa3fbbe49df4e28d7f 91 Pfam PF08891 YfcL protein 4 86 1.3E-35 T 13-10-2018 IPR014987 Uncharacterised protein family YfcL CS348_15695 6099901f721f258772a3354ac2279805 145 TIGRFAM TIGR01558 sm_term_P27: putative phage terminase, small subunit, P27 family 38 144 4.1E-18 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CS348_15695 6099901f721f258772a3354ac2279805 145 Pfam PF05119 Phage terminase, small subunit 40 132 1.4E-19 T 13-10-2018 IPR006448 Putative phage terminase, small subunit, P27 family CS348_19435 15a5df4b93ee9d0cbb25098756d911e4 146 Pfam PF03610 PTS system fructose IIA component 3 116 2.7E-24 T 13-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 CS348_19435 15a5df4b93ee9d0cbb25098756d911e4 146 SUPERFAMILY SSF53062 1 125 4.45E-26 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_19435 15a5df4b93ee9d0cbb25098756d911e4 146 Gene3D G3DSA:3.40.50.510 1 135 1.1E-18 T 13-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 CS348_21020 609451ef782d882548f4f7fda318694a 321 Pfam PF04754 Putative transposase, YhgA-like 8 209 2.9E-89 T 13-10-2018 IPR006842 Transposase (putative), YhgA-like CS348_21020 609451ef782d882548f4f7fda318694a 321 TIGRFAM TIGR01784 T_den_put_tspse: conserved hypothetical protein 9 318 2.0E-57 T 13-10-2018 IPR010106 Recombination-promoting nuclease RpnA CS348_10565 e570912451dedd41b279dc8573014146 879 Pfam PF02470 MlaD protein 395 457 7.4E-6 T 13-10-2018 IPR003399 Mce/MlaD CS348_10565 e570912451dedd41b279dc8573014146 879 Pfam PF02470 MlaD protein 749 812 3.0E-10 T 13-10-2018 IPR003399 Mce/MlaD CS348_10565 e570912451dedd41b279dc8573014146 879 Pfam PF02470 MlaD protein 282 356 1.5E-7 T 13-10-2018 IPR003399 Mce/MlaD CS348_10565 e570912451dedd41b279dc8573014146 879 Pfam PF02470 MlaD protein 165 222 1.2E-6 T 13-10-2018 IPR003399 Mce/MlaD CS348_10565 e570912451dedd41b279dc8573014146 879 Pfam PF02470 MlaD protein 48 139 8.8E-16 T 13-10-2018 IPR003399 Mce/MlaD CS348_10565 e570912451dedd41b279dc8573014146 879 Pfam PF02470 MlaD protein 638 726 5.3E-9 T 13-10-2018 IPR003399 Mce/MlaD CS348_07820 8e28aca5af1726ecf463eb86025823e9 162 Pfam PF02674 Colicin V production protein 4 141 7.0E-36 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 CS348_13195 b0b8f0992f7b2c46578601cff33ce45c 78 SUPERFAMILY SSF58042 24 74 4.58E-23 T 13-10-2018 CS348_13195 b0b8f0992f7b2c46578601cff33ce45c 78 Gene3D G3DSA:1.20.5.190 22 77 1.8E-33 T 13-10-2018 CS348_13195 b0b8f0992f7b2c46578601cff33ce45c 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 6.4E-25 T 13-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 CS348_13195 b0b8f0992f7b2c46578601cff33ce45c 78 PIRSF PIRSF002855 1 78 1.9E-29 T 13-10-2018 IPR016367 Murein-lipoprotein CS348_24735 8dcce82df6197fe41285c6d1fc9b6a22 134 Pfam PF07128 Protein of unknown function (DUF1380) 2 132 5.1E-30 T 13-10-2018 IPR009811 Protein of unknown function DUF1380 CS348_22475 79a6ae1b3f6b8c0b63d21682697e9128 80 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 65 1.3E-27 T 13-10-2018 IPR014318 Phage shock protein, PspG CS348_22475 79a6ae1b3f6b8c0b63d21682697e9128 80 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 63 4.0E-26 T 13-10-2018 IPR014318 Phage shock protein, PspG CS348_09495 db271b40a53cb88dbb11df41a856085e 319 Pfam PF03186 CobD/Cbib protein 7 297 3.9E-106 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CS348_09495 db271b40a53cb88dbb11df41a856085e 319 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 8 300 1.7E-73 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CS348_09495 db271b40a53cb88dbb11df41a856085e 319 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 318 107.039 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 CS348_22560 60397689db0b94dd21a42b77bdcc9c89 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 289 3.3E-16 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_22560 60397689db0b94dd21a42b77bdcc9c89 296 Gene3D G3DSA:1.10.3720.10 1 283 9.4E-75 T 13-10-2018 IPR035906 MetI-like superfamily CS348_22560 60397689db0b94dd21a42b77bdcc9c89 296 SUPERFAMILY SSF161098 8 296 2.52E-69 T 13-10-2018 IPR035906 MetI-like superfamily CS348_10800 3c9e8e20455a7b4c122a51876ec607a8 510 Pfam PF04293 SpoVR like protein 19 450 2.2E-177 T 13-10-2018 IPR007390 Sporulation stage V, protein R CS348_17495 5901d8cb47755e7937852e99493e8ddc 131 Pfam PF06894 Bacteriophage lambda tail assembly chaperone, TAC, protein G 1 120 4.6E-48 T 13-10-2018 IPR010027 Bacteriophage lambda, GpG, minor tail CS348_17495 5901d8cb47755e7937852e99493e8ddc 131 TIGRFAM TIGR01674 phage_lambda_G: phage minor tail protein G 1 131 5.0E-41 T 13-10-2018 IPR010027 Bacteriophage lambda, GpG, minor tail CS348_05325 b3081dc243a6ae9e42512d8bea32ace2 354 Pfam PF09344 CT1975-like protein 7 330 1.2E-101 T 13-10-2018 IPR010148 CRISPR-associated protein, CT1975 CS348_05325 b3081dc243a6ae9e42512d8bea32ace2 354 TIGRFAM TIGR01869 casC_Cse4: CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI 5 326 4.5E-100 T 13-10-2018 IPR010148 CRISPR-associated protein, CT1975 CS348_00280 7cfd57b58a5260e99c01561e3584e739 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 77 8.2E-12 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_00280 7cfd57b58a5260e99c01561e3584e739 95 Gene3D G3DSA:3.40.50.2300 2 93 3.2E-29 T 13-10-2018 CS348_00280 7cfd57b58a5260e99c01561e3584e739 95 SUPERFAMILY SSF52794 5 91 1.73E-17 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_14755 0b2ffd9918b3a155133cc35771a188c3 131 Pfam PF10627 Curli assembly protein CsgE 29 130 1.1E-34 T 13-10-2018 IPR018900 Curli assembly protein CsgE CS348_23335 efd57125bd343d233360674162716a99 704 Pfam PF12571 Phage tail-collar fibre protein 1 151 8.4E-54 T 13-10-2018 IPR022225 Phage tail fibre protein CS348_23335 efd57125bd343d233360674162716a99 704 Pfam PF03406 Phage tail fibre repeat 214 254 1.8E-18 T 13-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 CS348_23335 efd57125bd343d233360674162716a99 704 Pfam PF03406 Phage tail fibre repeat 170 210 6.2E-21 T 13-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 CS348_23335 efd57125bd343d233360674162716a99 704 Pfam PF03406 Phage tail fibre repeat 258 299 1.1E-19 T 13-10-2018 IPR005068 Bacteriophage lambda, Stf, side tail fibre-repeat-2 CS348_11160 f7600cfc97b29787dfe604101d1350da 98 Pfam PF03795 YCII-related domain 2 94 9.3E-28 T 13-10-2018 IPR005545 YCII-related CS348_11160 f7600cfc97b29787dfe604101d1350da 98 SUPERFAMILY SSF54909 2 97 4.83E-30 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CS348_11160 f7600cfc97b29787dfe604101d1350da 98 Gene3D G3DSA:3.30.70.1060 1 98 5.4E-38 T 13-10-2018 CS348_14880 34b429a8a4339afc5c87ce66fe1da58c 55 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 51 5.9E-9 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat CS348_14880 34b429a8a4339afc5c87ce66fe1da58c 55 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 2.8E-10 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat CS348_01825 8d8d6fabe58dbe1f5d2f88711f1ef086 55 Pfam PF10832 Protein of unknown function (DUF2559) 2 55 2.3E-32 T 13-10-2018 IPR022541 Protein of unknown function DUF2559 CS348_01825 8d8d6fabe58dbe1f5d2f88711f1ef086 55 ProDom PD026929 YHFG 1 55 7.0E-25 T 13-10-2018 IPR022541 Protein of unknown function DUF2559 CS348_25660 c2070a7181b44722194bece54a1b8b7d 337 SUPERFAMILY SSF81345 19 336 1.05E-74 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_25660 c2070a7181b44722194bece54a1b8b7d 337 Gene3D G3DSA:1.10.3470.10 16 337 1.3E-87 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CS348_25660 c2070a7181b44722194bece54a1b8b7d 337 Pfam PF01032 FecCD transport family 23 335 3.3E-84 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 CS348_02605 22097ff2e2e7c1d14c603fb5af75492e 210 SUPERFAMILY SSF56112 13 160 3.51E-8 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_02605 22097ff2e2e7c1d14c603fb5af75492e 210 Pfam PF10707 PhoP regulatory network protein YrbL 2 185 7.8E-66 T 13-10-2018 IPR019647 PhoP regulatory network protein YrbL CS348_24240 34932ab655de0ff462ae90c998f84352 242 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 3.3E-53 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 CS348_24240 34932ab655de0ff462ae90c998f84352 242 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 230 4.9E-61 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 CS348_09185 2757aa7cc9b3262f2cea2348fbfdb1e5 241 Pfam PF00535 Glycosyl transferase family 2 7 135 7.3E-30 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_09185 2757aa7cc9b3262f2cea2348fbfdb1e5 241 SUPERFAMILY SSF53448 6 202 1.31E-44 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_09185 2757aa7cc9b3262f2cea2348fbfdb1e5 241 Gene3D G3DSA:3.90.550.10 1 230 6.8E-51 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_12025 cce79fdf7801e591f6b76accde012f4d 149 Pfam PF04657 Putative inner membrane exporter, YdcZ 6 143 1.9E-20 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CS348_13880 1cf7a734b695323fc6c63948e2db9310 92 Pfam PF07023 Protein of unknown function (DUF1315) 5 80 2.2E-27 T 13-10-2018 IPR009749 Protein of unknown function DUF1315 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 Pfam PF00771 FHIPEP family 24 676 5.4E-218 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 Gene3D G3DSA:1.10.490.80 587 685 1.7E-32 T 13-10-2018 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PIRSF PIRSF005419 3 685 1.1E-214 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 Gene3D G3DSA:3.40.5.40 429 476 2.2E-57 T 13-10-2018 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 Gene3D G3DSA:3.40.30.60 357 495 2.2E-57 T 13-10-2018 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 12 685 1.8E-288 T 13-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 Gene3D G3DSA:1.10.8.540 497 586 5.7E-35 T 13-10-2018 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 31 44 1.1E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 149 167 1.1E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 179 196 1.1E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 130 146 1.1E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 68 87 1.1E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 230 244 1.1E-57 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 CS348_05540 0a6c5f4678b66f0cd66c81388929a848 685 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 135 158 - T 13-10-2018 IPR025505 FHIPEP conserved site CS348_00885 cd58eeeb674f1ce5852a0cc67a891e67 416 Pfam PF00155 Aminotransferase class I and II 167 373 1.0E-20 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CS348_00885 cd58eeeb674f1ce5852a0cc67a891e67 416 Gene3D G3DSA:3.40.640.10 1 414 7.6E-146 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CS348_00885 cd58eeeb674f1ce5852a0cc67a891e67 416 SUPERFAMILY SSF53383 16 412 2.75E-57 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CS348_00645 5ccede981e20ea62f6006b61c6d7f16f 381 SUPERFAMILY SSF53756 5 376 2.47E-58 T 13-10-2018 CS348_00645 5ccede981e20ea62f6006b61c6d7f16f 381 Gene3D G3DSA:3.40.50.2000 138 373 1.9E-46 T 13-10-2018 CS348_00645 5ccede981e20ea62f6006b61c6d7f16f 381 Gene3D G3DSA:3.40.50.2000 170 362 1.9E-46 T 13-10-2018 CS348_00645 5ccede981e20ea62f6006b61c6d7f16f 381 Pfam PF00534 Glycosyl transferases group 1 180 355 1.1E-40 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CS348_23690 485d424f0dd1cabecba0db3a337c5b92 413 Gene3D G3DSA:1.50.10.10 1 413 2.4E-192 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CS348_23690 485d424f0dd1cabecba0db3a337c5b92 413 Hamap MF_00998 Sulfoquinovose isomerase. 1 413 85.229 T 13-10-2018 IPR030875 Sulfoquinovose isomerase GO:0061593 MetaCyc: PWY-7446 CS348_23690 485d424f0dd1cabecba0db3a337c5b92 413 SUPERFAMILY SSF48208 3 409 8.75E-120 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CS348_23690 485d424f0dd1cabecba0db3a337c5b92 413 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 32 387 1.4E-129 T 13-10-2018 CS348_12445 d550437f36ff3ab23a8a035db932747b 300 SUPERFAMILY SSF103481 41 133 1.09E-11 T 13-10-2018 CS348_12445 d550437f36ff3ab23a8a035db932747b 300 SUPERFAMILY SSF103481 211 288 8.89E-11 T 13-10-2018 CS348_12445 d550437f36ff3ab23a8a035db932747b 300 Pfam PF00892 EamA-like transporter family 144 287 1.1E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_12445 d550437f36ff3ab23a8a035db932747b 300 Pfam PF00892 EamA-like transporter family 8 131 7.0E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_08790 a207331139186670d55c5b819a667cb4 198 Pfam PF09335 SNARE associated Golgi protein 32 153 3.9E-16 T 13-10-2018 IPR032816 SNARE associated Golgi protein CS348_06315 19462387650dfea28aa36c28ab85a3b5 566 Gene3D G3DSA:3.40.50.300 36 218 4.2E-5 T 13-10-2018 CS348_06315 19462387650dfea28aa36c28ab85a3b5 566 SUPERFAMILY SSF52540 43 320 2.08E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_00950 9427ba4e09f9ea981745966e21a284ee 73 Pfam PF13333 Integrase core domain 14 68 3.1E-19 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CS348_00950 9427ba4e09f9ea981745966e21a284ee 73 SUPERFAMILY SSF53098 1 63 2.85E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CS348_04095 90870d78b0bdba9b7c9192d92ddf896b 154 SUPERFAMILY SSF110849 2 124 2.27E-12 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CS348_04095 90870d78b0bdba9b7c9192d92ddf896b 154 Pfam PF02195 ParB-like nuclease domain 3 90 7.0E-5 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CS348_20940 92441221ae49eaaa88c67e879a29a9a2 353 Gene3D G3DSA:3.40.50.10490 1 182 5.9E-37 T 13-10-2018 CS348_20940 92441221ae49eaaa88c67e879a29a9a2 353 Pfam PF01380 SIS domain 40 164 1.3E-11 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CS348_20940 92441221ae49eaaa88c67e879a29a9a2 353 Gene3D G3DSA:3.40.50.10490 190 334 8.3E-45 T 13-10-2018 CS348_20940 92441221ae49eaaa88c67e879a29a9a2 353 SUPERFAMILY SSF53697 5 342 7.36E-53 T 13-10-2018 CS348_12505 b951b912746c31fb90221312a14a23b7 459 Gene3D G3DSA:1.20.1250.20 13 453 4.9E-58 T 13-10-2018 CS348_12505 b951b912746c31fb90221312a14a23b7 459 Pfam PF07690 Major Facilitator Superfamily 21 296 3.0E-21 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12505 b951b912746c31fb90221312a14a23b7 459 SUPERFAMILY SSF103473 11 437 9.02E-61 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_20415 1cd3cb2d9cf70431e9ba17aea48e35d3 449 PIRSF PIRSF004548 1 446 1.7E-180 T 13-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD CS348_20415 1cd3cb2d9cf70431e9ba17aea48e35d3 449 Pfam PF06123 Inner membrane protein CreD 6 427 4.9E-142 T 13-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD CS348_12670 1da057a2a1ecb2cd043fd7ff1e2af826 460 Pfam PF13520 Amino acid permease 5 439 4.6E-75 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_12670 1da057a2a1ecb2cd043fd7ff1e2af826 460 PIRSF PIRSF006060 1 459 5.9E-46 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_12670 1da057a2a1ecb2cd043fd7ff1e2af826 460 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 459 6.0E-182 T 13-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 CS348_12670 1da057a2a1ecb2cd043fd7ff1e2af826 460 Gene3D G3DSA:1.20.1740.10 1 449 4.0E-56 T 13-10-2018 CS348_23730 08be08a7e078373c40c2f164b862a584 291 Pfam PF00884 Sulfatase 34 273 3.4E-13 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_23730 08be08a7e078373c40c2f164b862a584 291 SUPERFAMILY SSF53649 34 283 8.9E-26 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_23730 08be08a7e078373c40c2f164b862a584 291 Gene3D G3DSA:3.40.720.10 23 285 2.8E-25 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_18550 d92def6c18583d67806f2cd762b04b5c 210 Pfam PF01810 LysE type translocator 17 206 1.6E-54 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_18550 d92def6c18583d67806f2cd762b04b5c 210 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 20 202 7.5E-69 T 13-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 CS348_18550 d92def6c18583d67806f2cd762b04b5c 210 PIRSF PIRSF006324 1 207 8.1E-52 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_24820 6a23fd679acd1e13b5e504b8599df7e1 242 Pfam PF06952 PsiA protein 1 237 9.0E-120 T 13-10-2018 IPR009713 Uncharacterised protein family PsiA CS348_03305 05c05005091b91e5f0c26e65e291d60f 223 Pfam PF06693 Protein of unknown function (DUF1190) 41 210 3.4E-57 T 13-10-2018 IPR009576 Biofilm formation YgiB CS348_03305 05c05005091b91e5f0c26e65e291d60f 223 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 223 37.102 T 13-10-2018 IPR009576 Biofilm formation YgiB CS348_15025 940bff3eed4de856e319ea6b3b303730 489 Gene3D G3DSA:3.60.60.10 20 346 1.7E-10 T 13-10-2018 CS348_15025 940bff3eed4de856e319ea6b3b303730 489 Pfam PF03577 Peptidase family C69 19 416 7.2E-160 T 13-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 CS348_20615 4a4460aef9fda7132a86166fe159e0ef 317 Gene3D G3DSA:3.90.1690.10 5 316 3.3E-80 T 13-10-2018 CS348_20115 94af6478aec3c4dd9e6bd6da73d68c19 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 2.3E-99 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CS348_20115 94af6478aec3c4dd9e6bd6da73d68c19 316 Pfam PF02401 LytB protein 3 282 7.3E-92 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CS348_20115 94af6478aec3c4dd9e6bd6da73d68c19 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 38.012 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CS348_20115 94af6478aec3c4dd9e6bd6da73d68c19 316 Gene3D G3DSA:3.40.50.11270 12 96 9.4E-112 T 13-10-2018 CS348_20115 94af6478aec3c4dd9e6bd6da73d68c19 316 Gene3D G3DSA:3.40.1010.20 6 281 9.4E-112 T 13-10-2018 CS348_20115 94af6478aec3c4dd9e6bd6da73d68c19 316 Gene3D G3DSA:3.40.1010.20 97 196 9.4E-112 T 13-10-2018 CS348_20340 58f23667c1fec53bf09a71f0e3172071 257 Pfam PF03883 Peroxide stress protein YaaA 1 243 6.5E-93 T 13-10-2018 IPR005583 Peroxide stress protein YaaA CS348_20340 58f23667c1fec53bf09a71f0e3172071 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.312 T 13-10-2018 IPR005583 Peroxide stress protein YaaA CS348_16145 e6ac810beac7251198ceb5472af0f4bd 370 Pfam PF03600 Citrate transporter 25 306 8.6E-26 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 CS348_18315 7b9332d2760e42492dc23f9a96035599 115 SMART SM00507 15 70 2.1E-6 T 13-10-2018 IPR003615 HNH nuclease CS348_18315 7b9332d2760e42492dc23f9a96035599 115 Pfam PF01844 HNH endonuclease 27 75 6.6E-12 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 CS348_18910 b7ea09ef2b197c669f2282b8b7149650 455 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 9 113 5.0E-45 T 13-10-2018 IPR009826 DNA circulation, N-terminal CS348_18910 b7ea09ef2b197c669f2282b8b7149650 455 Pfam PF07157 DNA circularisation protein N-terminus 5 91 2.2E-22 T 13-10-2018 IPR009826 DNA circulation, N-terminal CS348_25365 1ad8f9e84ec62e6d3bbdea3c818ed229 185 Pfam PF09676 Type IV conjugative transfer system lipoprotein (TraV) 22 173 3.4E-24 T 13-10-2018 IPR014118 Type IV conjugative transfer system protein TraV CS348_25365 1ad8f9e84ec62e6d3bbdea3c818ed229 185 TIGRFAM TIGR02747 TraV: type IV conjugative transfer system protein TraV 5 173 4.4E-16 T 13-10-2018 IPR014118 Type IV conjugative transfer system protein TraV CS348_23140 309357e58398634276bf81b5e8e339d3 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 1.7E-90 T 13-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 CS348_23140 309357e58398634276bf81b5e8e339d3 161 Gene3D G3DSA:3.50.30.40 1 161 3.0E-61 T 13-10-2018 CS348_23140 309357e58398634276bf81b5e8e339d3 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 3.0E-62 T 13-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 CS348_23140 309357e58398634276bf81b5e8e339d3 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 47.067 T 13-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 CS348_23140 309357e58398634276bf81b5e8e339d3 161 SUPERFAMILY SSF89562 2 158 7.46E-44 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily CS348_23140 309357e58398634276bf81b5e8e339d3 161 Pfam PF03737 Aldolase/RraA 5 152 1.0E-35 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CS348_10835 60fcbb334cce96d1799346fbd663663e 84 Pfam PF04226 Transglycosylase associated protein 34 83 3.3E-14 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 CS348_01610 8d83cdb7005296821480c5cd3d2f62a5 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 3.9E-201 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_01610 8d83cdb7005296821480c5cd3d2f62a5 438 PIRSF PIRSF002746 1 438 1.2E-158 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_01610 8d83cdb7005296821480c5cd3d2f62a5 438 Pfam PF02447 GntP family permease 1 437 2.7E-186 T 13-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 CS348_16950 5a2d0877c93accd5f17ff048200a8568 241 PIRSF PIRSF039085 1 241 4.6E-106 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 CS348_16950 5a2d0877c93accd5f17ff048200a8568 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 CS348_16950 5a2d0877c93accd5f17ff048200a8568 241 Gene3D G3DSA:3.40.50.300 1 240 3.2E-76 T 13-10-2018 CS348_16950 5a2d0877c93accd5f17ff048200a8568 241 SUPERFAMILY SSF52540 1 235 7.48E-77 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_16950 5a2d0877c93accd5f17ff048200a8568 241 Pfam PF00005 ABC transporter 17 165 6.2E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CS348_16950 5a2d0877c93accd5f17ff048200a8568 241 SMART SM00382 26 213 9.8E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CS348_07470 0550d5c8d968f198c663d3e0859dc513 52 TIGRFAM TIGR03510 XapX: XapX domain 3 49 4.2E-19 T 13-10-2018 IPR020017 XapX domain CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 Pfam PF00230 Major intrinsic protein 6 249 2.2E-64 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 Gene3D G3DSA:1.20.1080.10 1 257 3.2E-99 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 TIGRFAM TIGR00861 MIP: MIP family channel proteins 11 249 3.3E-67 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 PRINTS PR00783 Major intrinsic protein family signature 182 204 3.0E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 PRINTS PR00783 Major intrinsic protein family signature 46 70 3.0E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 PRINTS PR00783 Major intrinsic protein family signature 83 102 3.0E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 PRINTS PR00783 Major intrinsic protein family signature 149 167 3.0E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 PRINTS PR00783 Major intrinsic protein family signature 232 252 3.0E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 PRINTS PR00783 Major intrinsic protein family signature 7 26 3.0E-50 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 ProSitePatterns PS00221 MIP family signature. 64 72 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 CS348_09480 4e09c6877bbb49b9db3ab646793b9895 264 SUPERFAMILY SSF81338 6 255 8.5E-76 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 CS348_19955 ae8ae459af46a0474739cf8f66729b46 76 SUPERFAMILY SSF50182 22 74 3.49E-15 T 13-10-2018 IPR010920 LSM domain superfamily CS348_19955 ae8ae459af46a0474739cf8f66729b46 76 Gene3D G3DSA:2.30.30.100 20 76 4.6E-24 T 13-10-2018 CS348_19955 ae8ae459af46a0474739cf8f66729b46 76 Pfam PF06004 Bacterial protein of unknown function (DUF903) 25 73 8.8E-19 T 13-10-2018 IPR010305 Protein of unknown function DUF903 CS348_11725 9c9fc3851f3bd95ff52ac8f85c902927 88 Pfam PF03891 Domain of unknown function (DUF333) 39 83 6.3E-14 T 13-10-2018 IPR005590 Protein of unknown function DUF333 CS348_01845 dc7a3704be536a8ca29b616bc1c877ff 695 Pfam PF12805 FUSC-like inner membrane protein yccS 63 330 4.4E-72 T 13-10-2018 IPR032692 Integral membrane protein YccS, N-terminal CS348_01845 dc7a3704be536a8ca29b616bc1c877ff 695 Pfam PF13515 Fusaric acid resistance protein-like 377 498 1.6E-20 T 13-10-2018 CS348_01845 dc7a3704be536a8ca29b616bc1c877ff 695 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 674 3.3E-248 T 13-10-2018 IPR010020 Integral membrane protein, YccS/YhfK CS348_14210 0e7b7d994e5f42300e606df2c128d162 374 Pfam PF12294 Protein of unknown function (DUF3626) 205 341 9.2E-11 T 13-10-2018 IPR022074 Protein of unknown function DUF3626 CS348_15895 9433d4e0a3d96e69418f2784aef7ab7e 106 Gene3D G3DSA:3.40.50.2300 1 99 6.7E-18 T 13-10-2018 CS348_15895 9433d4e0a3d96e69418f2784aef7ab7e 106 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 6 90 1.5E-14 T 13-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 CS348_15895 9433d4e0a3d96e69418f2784aef7ab7e 106 SUPERFAMILY SSF52794 5 98 3.66E-16 T 13-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 CS348_07230 79527ee03a3d84e9db44c56faed0e516 111 Gene3D G3DSA:3.30.70.1710 1 111 2.1E-48 T 13-10-2018 CS348_07230 79527ee03a3d84e9db44c56faed0e516 111 SMART SM00877 39 111 4.3E-13 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07230 79527ee03a3d84e9db44c56faed0e516 111 Pfam PF00936 BMC domain 40 103 2.0E-11 T 13-10-2018 IPR000249 Microcompartment protein, bacteria CS348_07230 79527ee03a3d84e9db44c56faed0e516 111 PIRSF PIRSF012296 1 111 1.0E-56 T 13-10-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 CS348_07230 79527ee03a3d84e9db44c56faed0e516 111 SUPERFAMILY SSF143414 39 106 2.35E-12 T 13-10-2018 IPR037233 CcmK-like superfamily CS348_05345 fddfcc9b5972f248f053eb0a28932fb4 96 Pfam PF09707 CRISPR-associated protein (Cas_Cas2CT1978) 3 88 4.6E-37 T 13-10-2018 IPR010152 CRISPR-associated protein Cas2 subtype CS348_05345 fddfcc9b5972f248f053eb0a28932fb4 96 TIGRFAM TIGR01873 cas_CT1978: CRISPR-associated endoribonuclease Cas2, subtype I-E/ECOLI 3 88 3.1E-41 T 13-10-2018 IPR010152 CRISPR-associated protein Cas2 subtype CS348_05345 fddfcc9b5972f248f053eb0a28932fb4 96 Gene3D G3DSA:3.30.70.240 1 77 1.5E-33 T 13-10-2018 CS348_15470 e5e855ac83273945fa406343e9b3848b 225 Pfam PF00857 Isochorismatase family 20 172 8.1E-22 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CS348_15470 e5e855ac83273945fa406343e9b3848b 225 SUPERFAMILY SSF52499 12 208 5.36E-47 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_15470 e5e855ac83273945fa406343e9b3848b 225 Gene3D G3DSA:3.40.50.850 12 215 2.9E-50 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CS348_20805 c07177c14d9f22cff230ed2a0f41c7ed 516 PIRSF PIRSF028991 6 516 2.3E-275 T 13-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted CS348_20805 c07177c14d9f22cff230ed2a0f41c7ed 516 Pfam PF11230 Protein of unknown function (DUF3029) 22 504 1.4E-222 T 13-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted CS348_20805 c07177c14d9f22cff230ed2a0f41c7ed 516 TIGRFAM TIGR04040 glycyl_YjjI: glycine radical enzyme, YjjI family 11 504 1.6E-240 T 13-10-2018 IPR016905 Glycyl radical enzyme, HI0521, predicted CS348_20805 c07177c14d9f22cff230ed2a0f41c7ed 516 SUPERFAMILY SSF51998 24 470 1.53E-88 T 13-10-2018 CS348_04725 8dbeae7eb3f4bad893b57a3ae74dc3c5 219 Pfam PF03006 Haemolysin-III related 12 209 7.5E-37 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 CS348_04725 8dbeae7eb3f4bad893b57a3ae74dc3c5 219 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 15 216 1.6E-71 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 CS348_21390 008526ea1db932df0605ac5e21cdf391 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 1.8E-158 T 13-10-2018 IPR020042 Protein of unknown function DUF4311 CS348_21390 008526ea1db932df0605ac5e21cdf391 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 5.0E-124 T 13-10-2018 IPR020042 Protein of unknown function DUF4311 CS348_10615 bc6cf546f05c658290e6d5caefd0e059 95 Pfam PF13974 YebO-like protein 16 95 1.3E-33 T 13-10-2018 IPR025594 YebO-like protein CS348_04000 1384c75c2c3769db6c5a52bd4996b838 112 TIGRFAM TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family 17 112 4.2E-24 T 13-10-2018 IPR021356 Integrating conjugative element protein PFL4702 CS348_04000 1384c75c2c3769db6c5a52bd4996b838 112 Pfam PF11190 Protein of unknown function (DUF2976) 31 111 3.5E-22 T 13-10-2018 IPR021356 Integrating conjugative element protein PFL4702 CS348_19660 9ac7f19d68d214d978555579bdce1d23 165 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 165 4.0E-90 T 13-10-2018 IPR009502 Secretion monitor GO:0045182 CS348_19660 9ac7f19d68d214d978555579bdce1d23 165 PIRSF PIRSF004572 1 165 1.6E-81 T 13-10-2018 IPR009502 Secretion monitor GO:0045182 CS348_19660 9ac7f19d68d214d978555579bdce1d23 165 Pfam PF06558 Secretion monitor precursor protein (SecM) 24 162 1.1E-52 T 13-10-2018 IPR009502 Secretion monitor GO:0045182 CS348_19660 9ac7f19d68d214d978555579bdce1d23 165 Hamap MF_01332 Secretion monitor [secM]. 1 165 38.794 T 13-10-2018 IPR009502 Secretion monitor GO:0045182 CS348_08735 2c42c5920f3c7b8e14c09266fcdaf81f 132 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 23.804 T 13-10-2018 IPR022957 Uncharacterised protein family UPF0299 CS348_08735 2c42c5920f3c7b8e14c09266fcdaf81f 132 Pfam PF03788 LrgA family 23 113 4.9E-29 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 CS348_25500 e9c8f77a358f61e00d8175d50ebb1be7 240 Gene3D G3DSA:3.30.70.1270 4 235 2.4E-79 T 13-10-2018 CS348_25500 e9c8f77a358f61e00d8175d50ebb1be7 240 SUPERFAMILY SSF160940 3 235 1.06E-86 T 13-10-2018 CS348_25500 e9c8f77a358f61e00d8175d50ebb1be7 240 Pfam PF06924 Protein of unknown function (DUF1281) 15 141 1.6E-38 T 13-10-2018 IPR009694 Protein of unknown function DUF1281 CS348_25500 e9c8f77a358f61e00d8175d50ebb1be7 240 Gene3D G3DSA:1.10.3530.10 30 208 2.4E-79 T 13-10-2018 IPR023136 Api92-like domain superfamily CS348_11745 6aa484b6362b82dc4946505045eb5e4a 63 Pfam PF13617 YnbE-like lipoprotein 7 61 1.5E-28 T 13-10-2018 IPR025985 YnbE-like lipoprotein CS348_11745 6aa484b6362b82dc4946505045eb5e4a 63 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 16 63 1.0E-21 T 13-10-2018 CS348_04830 fd1ee70e686cd9efd3df8de269310842 210 Gene3D G3DSA:1.20.120.1940 16 115 7.5E-19 T 13-10-2018 CS348_04830 fd1ee70e686cd9efd3df8de269310842 210 Gene3D G3DSA:1.20.120.1940 116 188 4.9E-16 T 13-10-2018 CS348_04830 fd1ee70e686cd9efd3df8de269310842 210 Pfam PF10938 YfdX protein 44 194 2.0E-41 T 13-10-2018 IPR021236 Uncharacterised protein family YfdX CS348_09445 753d95e401cdaaddc3d22a0b8f1baaff 116 Gene3D G3DSA:3.40.50.10150 1 116 3.1E-47 T 13-10-2018 IPR010254 B12-dependent dehydratases, beta subunit CS348_09445 753d95e401cdaaddc3d22a0b8f1baaff 116 SUPERFAMILY SSF52968 3 115 1.44E-38 T 13-10-2018 IPR010254 B12-dependent dehydratases, beta subunit CS348_09445 753d95e401cdaaddc3d22a0b8f1baaff 116 Pfam PF02288 Dehydratase medium subunit 7 111 1.0E-32 T 13-10-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor CS348_09445 753d95e401cdaaddc3d22a0b8f1baaff 116 PIRSF PIRSF011503 1 114 4.8E-49 T 13-10-2018 IPR009192 Diol/glycerol dehydratase reactivating factor, small subunit CS348_10680 4cfdd3ba4c9887adfe5ea17f7d283bfb 533 SMART SM00052 266 507 5.7E-108 T 13-10-2018 IPR001633 EAL domain CS348_10680 4cfdd3ba4c9887adfe5ea17f7d283bfb 533 Pfam PF12792 CSS motif domain associated with EAL 43 239 2.4E-42 T 13-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain CS348_10680 4cfdd3ba4c9887adfe5ea17f7d283bfb 533 Gene3D G3DSA:3.20.20.450 265 516 1.9E-75 T 13-10-2018 IPR035919 EAL domain superfamily CS348_10680 4cfdd3ba4c9887adfe5ea17f7d283bfb 533 Pfam PF00563 EAL domain 275 502 6.0E-62 T 13-10-2018 IPR001633 EAL domain CS348_10680 4cfdd3ba4c9887adfe5ea17f7d283bfb 533 SUPERFAMILY SSF141868 273 514 6.41E-74 T 13-10-2018 IPR035919 EAL domain superfamily CS348_07375 70e480d65f1f99a2ac8ddf2c57b5185e 125 ProDom PD031420 YFEK EXPORTED PRECURSOR SIGNAL PERIPLASMIC ECS3291 XCC0326 7 113 2.0E-45 T 13-10-2018 IPR035242 Protein of unknown function DUF5329 CS348_07375 70e480d65f1f99a2ac8ddf2c57b5185e 125 Pfam PF17263 Family of unknown function (DUF5329) 30 121 2.1E-32 T 13-10-2018 IPR035242 Protein of unknown function DUF5329 CS348_01325 fa246bbf30a1dc973952a379131ab375 349 Pfam PF01594 AI-2E family transporter 14 328 5.8E-77 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CS348_12860 f1af8a5eefbdbb5171bc87042edb95ae 679 Pfam PF04632 Fusaric acid resistance protein family 20 663 3.8E-172 T 13-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 CS348_18155 92067f6afe2d44b5aaea28ffadb91435 491 Gene3D G3DSA:1.20.1250.20 11 203 1.6E-14 T 13-10-2018 CS348_18155 92067f6afe2d44b5aaea28ffadb91435 491 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 3.3E-126 T 13-10-2018 CS348_18155 92067f6afe2d44b5aaea28ffadb91435 491 Pfam PF07690 Major Facilitator Superfamily 17 366 2.5E-31 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_18155 92067f6afe2d44b5aaea28ffadb91435 491 Gene3D G3DSA:1.20.1250.20 213 407 6.2E-15 T 13-10-2018 CS348_18155 92067f6afe2d44b5aaea28ffadb91435 491 SUPERFAMILY SSF103473 10 404 2.35E-41 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18645 539726f4f207a81adcbcc11b3a2f54ed 174 Gene3D G3DSA:2.40.160.20 22 174 4.1E-47 T 13-10-2018 CS348_18645 539726f4f207a81adcbcc11b3a2f54ed 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 49 61 6.9E-14 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_18645 539726f4f207a81adcbcc11b3a2f54ed 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 162 173 6.9E-14 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_18645 539726f4f207a81adcbcc11b3a2f54ed 174 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 135 156 6.9E-14 T 13-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 CS348_18645 539726f4f207a81adcbcc11b3a2f54ed 174 SUPERFAMILY SSF56925 25 174 6.8E-26 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CS348_18645 539726f4f207a81adcbcc11b3a2f54ed 174 Pfam PF13505 Outer membrane protein beta-barrel domain 8 174 8.1E-19 T 13-10-2018 IPR027385 Outer membrane protein beta-barrel CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 SUPERFAMILY SSF89447 1 137 1.05E-45 T 13-10-2018 IPR037914 SpoVT-AbrB domain superfamily CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 139 8.6E-21 T 13-10-2018 IPR020603 MraZ domain CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 9.2E-25 T 13-10-2018 IPR020603 MraZ domain CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 6.5E-66 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 Gene3D G3DSA:2.40.330.20 1 151 5.5E-43 T 13-10-2018 IPR038619 MraZ superfamily CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 139 8.0E-79 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CS348_19740 b8e543ccaea6cca813108f743cc2098f 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 58.108 T 13-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 CS348_20140 67da49bd62d639c6b9350453ea6da5da 71 Pfam PF10837 Protein of unknown function (DUF2575) 2 71 6.0E-47 T 13-10-2018 IPR020105 Uncharacterised protein family YaaY CS348_20140 67da49bd62d639c6b9350453ea6da5da 71 ProDom PD056390 YAAY CYTOPLASMIC STY0053 ECS0027 1 71 5.0E-35 T 13-10-2018 IPR020105 Uncharacterised protein family YaaY CS348_12540 a634e8874c8750058e9f3038efe650b7 102 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 24 80 8.0E-29 T 13-10-2018 IPR010595 Protein of unknown function DUF1161 CS348_12540 a634e8874c8750058e9f3038efe650b7 102 Pfam PF06649 Protein of unknown function (DUF1161) 27 80 1.2E-21 T 13-10-2018 IPR010595 Protein of unknown function DUF1161 CS348_04520 d0e7adf2897d752b5d3279c014fb8b37 43 Pfam PF11036 Virulence promoting factor 1 43 4.6E-33 T 13-10-2018 IPR020196 Uncharacterised protein family YqgB CS348_04520 d0e7adf2897d752b5d3279c014fb8b37 43 ProDom PD050163 YQGB INNER MEMBRANE STY3241 1 43 2.0E-18 T 13-10-2018 IPR020196 Uncharacterised protein family YqgB CS348_11215 1d821234a75e16fae03077c152633475 60 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 3.8E-9 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat CS348_11215 1d821234a75e16fae03077c152633475 60 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 52 4.2E-10 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 226 1.3E-14 T 13-10-2018 IPR016148 Pili assembly chaperone, C-terminal CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 Gene3D G3DSA:2.60.40.10 148 239 2.1E-21 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 SUPERFAMILY SSF49584 153 239 1.18E-21 T 13-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 PRINTS PR00969 Pili chaperone signature 164 179 4.6E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 PRINTS PR00969 Pili chaperone signature 128 143 4.6E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 PRINTS PR00969 Pili chaperone signature 75 96 4.6E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 PRINTS PR00969 Pili chaperone signature 105 122 4.6E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 PRINTS PR00969 Pili chaperone signature 29 38 4.6E-30 T 13-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 104 121 - T 13-10-2018 IPR018046 Pili assembly chaperone, conserved site CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 Gene3D G3DSA:2.60.40.10 28 147 3.9E-38 T 13-10-2018 IPR013783 Immunoglobulin-like fold CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 146 9.6E-37 T 13-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 CS348_04140 2fea7ea10efba94dba855c9fce78d73a 243 SUPERFAMILY SSF49354 29 146 4.97E-36 T 13-10-2018 IPR008962 PapD-like superfamily CS348_04570 f5d4335c755a7df2b01df42f4353c538 238 Gene3D G3DSA:3.40.50.300 23 228 7.1E-52 T 13-10-2018 CS348_04570 f5d4335c755a7df2b01df42f4353c538 238 SUPERFAMILY SSF52540 22 224 2.49E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_14940 533a5c5b26deeeb79306365bddefea06 120 Hamap MF_01199 Anti-adapter protein IraM [iraM]. 1 110 30.798 T 13-10-2018 IPR014448 Anti-adapter protein IraM GO:0005737 CS348_14940 533a5c5b26deeeb79306365bddefea06 120 PIRSF PIRSF007036 1 114 4.6E-59 T 13-10-2018 IPR014448 Anti-adapter protein IraM GO:0005737 CS348_23740 0c338e1496c4428e87634499cdba83f6 292 SUPERFAMILY SSF102114 20 250 3.27E-15 T 13-10-2018 CS348_23740 0c338e1496c4428e87634499cdba83f6 292 Gene3D G3DSA:3.20.20.70 17 263 4.5E-12 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CS348_17725 0a67c2fbd437caeb9376b0e49257effa 185 SUPERFAMILY SSF49401 34 185 2.98E-37 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_17725 0a67c2fbd437caeb9376b0e49257effa 185 Gene3D G3DSA:2.60.40.1090 33 185 6.7E-48 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_17725 0a67c2fbd437caeb9376b0e49257effa 185 Pfam PF00419 Fimbrial protein 35 184 1.4E-24 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_06795 8629009c9eb44023f62e89cd2bc8e522 328 Pfam PF03824 High-affinity nickel-transport protein 188 311 1.1E-17 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 CS348_06795 8629009c9eb44023f62e89cd2bc8e522 328 Pfam PF03824 High-affinity nickel-transport protein 73 179 5.0E-23 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 CS348_01145 0009c5227f38f86df592b499bf413722 369 Gene3D G3DSA:1.50.10.10 23 361 3.9E-146 T 13-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 CS348_01145 0009c5227f38f86df592b499bf413722 369 ProSitePatterns PS00812 Glycosyl hydrolases family 8 signature. 115 133 - T 13-10-2018 IPR019834 Glycoside hydrolase, family 8, conserved site KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 SUPERFAMILY SSF48208 5 352 1.97E-102 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 CS348_01145 0009c5227f38f86df592b499bf413722 369 Pfam PF01270 Glycosyl hydrolases family 8 3 347 4.5E-127 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 2.6E-20 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 2.6E-20 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 PRINTS PR00735 Glycosyl hydrolase family 8 signature 241 250 2.6E-20 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 PRINTS PR00735 Glycosyl hydrolase family 8 signature 332 346 2.6E-20 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 PRINTS PR00735 Glycosyl hydrolase family 8 signature 216 227 2.6E-20 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_01145 0009c5227f38f86df592b499bf413722 369 PRINTS PR00735 Glycosyl hydrolase family 8 signature 180 197 2.6E-20 T 13-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 CS348_02745 04c926d91a49e73b2c3046fcf4af298d 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 2.3E-22 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CS348_02745 04c926d91a49e73b2c3046fcf4af298d 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 9.3E-43 T 13-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 CS348_02745 04c926d91a49e73b2c3046fcf4af298d 97 Gene3D G3DSA:3.30.110.60 1 97 5.1E-39 T 13-10-2018 IPR035920 YhbY-like superfamily CS348_02745 04c926d91a49e73b2c3046fcf4af298d 97 SMART SM01103 3 86 2.2E-41 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CS348_02745 04c926d91a49e73b2c3046fcf4af298d 97 SUPERFAMILY SSF75471 1 95 3.27E-31 T 13-10-2018 IPR035920 YhbY-like superfamily CS348_02745 04c926d91a49e73b2c3046fcf4af298d 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 2.0E-45 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CS348_08825 20a3f9136f6cc17331f003d0de5f9e1a 389 Gene3D G3DSA:1.10.3720.10 172 381 1.1E-29 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08825 20a3f9136f6cc17331f003d0de5f9e1a 389 SUPERFAMILY SSF161098 177 376 1.16E-31 T 13-10-2018 IPR035906 MetI-like superfamily CS348_08825 20a3f9136f6cc17331f003d0de5f9e1a 389 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 199 380 3.6E-22 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_08885 4c999aecef908a13009756df3a2c748e 93 ProDom PD064930 YEHE MEMBRANE OUTER STY2382 PRECURSOR ECS2918 SIGNAL 1 83 4.0E-42 T 13-10-2018 IPR020386 Uncharacterised protein family YehE CS348_08885 4c999aecef908a13009756df3a2c748e 93 Pfam PF10836 Protein of unknown function (DUF2574) 1 93 3.3E-53 T 13-10-2018 IPR020386 Uncharacterised protein family YehE CS348_01700 3d497473220dc8d3c3191c06bd5e71e6 710 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 703 0.0 T 13-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 CS348_01700 3d497473220dc8d3c3191c06bd5e71e6 710 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 20 697 0.0 T 13-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 CS348_09050 a65a448ac3ad375f89af9fe541464a36 193 Pfam PF00692 dUTPase 79 185 5.9E-8 T 13-10-2018 IPR029054 dUTPase-like CS348_09050 a65a448ac3ad375f89af9fe541464a36 193 Gene3D G3DSA:2.70.40.10 1 193 8.9E-52 T 13-10-2018 IPR036157 dUTPase-like superfamily CS348_09050 a65a448ac3ad375f89af9fe541464a36 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 2.8E-67 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 CS348_09050 a65a448ac3ad375f89af9fe541464a36 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 33.579 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 CS348_09050 a65a448ac3ad375f89af9fe541464a36 193 SUPERFAMILY SSF51283 1 193 1.57E-59 T 13-10-2018 IPR036157 dUTPase-like superfamily CS348_25785 38c886a5d35b147aa836b32668132fb3 293 Pfam PF02387 IncFII RepA protein family 13 256 5.3E-32 T 13-10-2018 IPR003446 Plasmid replication initiation, RepA GO:0006276 CS348_25785 38c886a5d35b147aa836b32668132fb3 293 TIGRFAM TIGR03474 incFII_RepA: incFII family plasmid replication initiator RepA 11 291 2.9E-167 T 13-10-2018 IPR017837 Plasmid replication initiator, RepA, IncFII type CS348_15090 151971c3e519c84c66995388c1dbae58 182 Pfam PF01161 Phosphatidylethanolamine-binding protein 44 180 1.3E-38 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein CS348_15090 151971c3e519c84c66995388c1dbae58 182 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 42 180 1.6E-48 T 13-10-2018 IPR005247 YbhB/YbcL CS348_15090 151971c3e519c84c66995388c1dbae58 182 Gene3D G3DSA:3.90.280.10 10 182 1.6E-58 T 13-10-2018 IPR036610 PEBP-like superfamily CS348_15090 151971c3e519c84c66995388c1dbae58 182 SUPERFAMILY SSF49777 25 181 6.8E-53 T 13-10-2018 IPR036610 PEBP-like superfamily CS348_18895 a3a9b29264df9fdc58b0e8c7e397b37b 145 Pfam PF07409 Phage protein GP46 28 139 2.7E-38 T 13-10-2018 IPR010877 Bacteriophage Mu, Gp46 CS348_10365 9d5e374232ec37d2e548dac2d295bf07 218 Pfam PF00795 Carbon-nitrogen hydrolase 5 101 6.9E-14 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CS348_10365 9d5e374232ec37d2e548dac2d295bf07 218 SUPERFAMILY SSF56317 4 195 2.62E-16 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_10365 9d5e374232ec37d2e548dac2d295bf07 218 Gene3D G3DSA:3.60.110.10 2 102 1.0E-13 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CS348_17680 edc54139fb1cb3b8ecaa222b399ed85c 198 Pfam PF00196 Bacterial regulatory proteins, luxR family 134 185 1.5E-5 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17680 edc54139fb1cb3b8ecaa222b399ed85c 198 SMART SM00421 131 188 4.6E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CS348_17680 edc54139fb1cb3b8ecaa222b399ed85c 198 Gene3D G3DSA:1.10.10.10 99 193 3.5E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_17680 edc54139fb1cb3b8ecaa222b399ed85c 198 SUPERFAMILY SSF46894 127 188 1.43E-8 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CS348_22120 a684d01bccf9a7c21e1b116566e62df7 301 SUPERFAMILY SSF50956 60 295 3.01E-39 T 13-10-2018 CS348_22120 a684d01bccf9a7c21e1b116566e62df7 301 Pfam PF06977 SdiA-regulated 55 295 1.4E-88 T 13-10-2018 IPR009722 SdiA-regulated CS348_16935 eab4f64734f87e8624c187e095f2b3c5 308 SMART SM00062 47 279 5.4E-68 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_16935 eab4f64734f87e8624c187e095f2b3c5 308 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 48 277 3.8E-48 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CS348_16935 eab4f64734f87e8624c187e095f2b3c5 308 SUPERFAMILY SSF53850 19 280 1.43E-63 T 13-10-2018 CS348_16935 eab4f64734f87e8624c187e095f2b3c5 308 Gene3D G3DSA:3.40.190.10 141 236 3.1E-105 T 13-10-2018 CS348_16935 eab4f64734f87e8624c187e095f2b3c5 308 Gene3D G3DSA:3.40.190.10 36 282 3.1E-105 T 13-10-2018 CS348_13515 2d00a5a28dbd75666072e9f0e35e8e7a 66 Pfam PF05489 Phage Tail Protein X 1 55 1.0E-20 T 13-10-2018 IPR008861 Phage Tail Protein X-like CS348_13515 2d00a5a28dbd75666072e9f0e35e8e7a 66 Gene3D G3DSA:3.10.350.10 1 66 1.1E-25 T 13-10-2018 IPR036779 LysM domain superfamily CS348_01830 14dc3e6af554377cf94801122dc42169 200 Pfam PF02661 Fic/DOC family 58 152 1.5E-14 T 13-10-2018 IPR003812 Fido domain CS348_01830 14dc3e6af554377cf94801122dc42169 200 Gene3D G3DSA:1.10.3290.10 10 200 5.1E-55 T 13-10-2018 IPR036597 Fido-like domain superfamily CS348_01830 14dc3e6af554377cf94801122dc42169 200 SUPERFAMILY SSF140931 41 197 5.75E-29 T 13-10-2018 IPR036597 Fido-like domain superfamily CS348_20430 5bf0082d301af2dbdf159d8570c8cc2d 157 Pfam PF05981 CreA protein 24 155 1.4E-58 T 13-10-2018 IPR010292 Uncharacterised protein family CreA CS348_20430 5bf0082d301af2dbdf159d8570c8cc2d 157 PIRSF PIRSF003174 1 157 3.5E-69 T 13-10-2018 IPR010292 Uncharacterised protein family CreA CS348_06145 6dfc7cd53c4297ab359358e8ba99b093 504 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 1.0E-143 T 13-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane CS348_02405 80db15c7b2a888abdb4a5e29d217cf18 655 Pfam PF04632 Fusaric acid resistance protein family 11 654 1.8E-161 T 13-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 CS348_02405 80db15c7b2a888abdb4a5e29d217cf18 655 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 3 653 55.076 T 13-10-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0046942 CS348_00680 dc73d9980254dfd7092a3293dd9e99af 344 Gene3D G3DSA:3.90.550.10 1 258 9.6E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_00680 dc73d9980254dfd7092a3293dd9e99af 344 Pfam PF00535 Glycosyl transferase family 2 9 136 2.7E-31 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CS348_00680 dc73d9980254dfd7092a3293dd9e99af 344 SUPERFAMILY SSF53448 7 224 3.33E-50 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CS348_21345 edfddfa6493903c33acd4e6f8d834432 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 3.8E-184 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 CS348_21345 edfddfa6493903c33acd4e6f8d834432 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 1.6E-212 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 CS348_21345 edfddfa6493903c33acd4e6f8d834432 712 SUPERFAMILY SSF51998 121 687 5.8E-201 T 13-10-2018 CS348_21345 edfddfa6493903c33acd4e6f8d834432 712 Pfam PF03477 ATP cone domain 4 89 1.0E-20 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CS348_21345 edfddfa6493903c33acd4e6f8d834432 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 13-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site CS348_21345 edfddfa6493903c33acd4e6f8d834432 712 Gene3D G3DSA:3.20.70.20 121 687 2.6E-239 T 13-10-2018 CS348_05730 e62c6c9bc1a99e0070636fe4a59053a2 114 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 1 97 2.0E-52 T 13-10-2018 IPR020483 Uncharacterised protein family YgbA CS348_05730 e62c6c9bc1a99e0070636fe4a59053a2 114 Pfam PF11756 Nitrous oxide-stimulated promoter 4 106 5.1E-39 T 13-10-2018 IPR020483 Uncharacterised protein family YgbA CS348_04005 e571a308eed12e2b8956f5f6568ed092 129 TIGRFAM TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family 4 122 7.1E-31 T 13-10-2018 IPR021877 Protein of unknown function DUF3487 CS348_04005 e571a308eed12e2b8956f5f6568ed092 129 Pfam PF11990 Protein of unknown function (DUF3487) 3 123 9.3E-29 T 13-10-2018 IPR021877 Protein of unknown function DUF3487 CS348_07455 df83bad41dbf2b4483925d5e3c72a61f 253 SUPERFAMILY SSF111364 25 253 1.96E-45 T 13-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 CS348_07455 df83bad41dbf2b4483925d5e3c72a61f 253 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 33 253 3.1E-37 T 13-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 CS348_12450 7a4ea29f757b1867b485f89eaeb4fcfe 395 Gene3D G3DSA:1.20.1250.20 1 384 1.3E-35 T 13-10-2018 CS348_12450 7a4ea29f757b1867b485f89eaeb4fcfe 395 Pfam PF07690 Major Facilitator Superfamily 13 341 6.3E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_12450 7a4ea29f757b1867b485f89eaeb4fcfe 395 SUPERFAMILY SSF103473 6 387 4.05E-43 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_12190 478c8025f029402bfe48167de3466c81 305 SUPERFAMILY SSF58100 1 299 1.44E-173 T 13-10-2018 CS348_12190 478c8025f029402bfe48167de3466c81 305 Pfam PF06109 Haemolysin E (HlyE) 16 295 2.5E-115 T 13-10-2018 IPR027018 Hemolysin E GO:0009405|GO:0044179 CS348_12190 478c8025f029402bfe48167de3466c81 305 Gene3D G3DSA:1.20.1170.10 8 305 5.2E-128 T 13-10-2018 CS348_25725 b364beaead12d9c612fc85bba05e7cb6 307 Pfam PF04393 Protein of unknown function (DUF535) 26 300 2.2E-85 T 13-10-2018 IPR007488 Protein of unknown function DUF535 CS348_21045 5c5fbee14b0279803c9bd93139edb578 153 Pfam PF07670 Nucleoside recognition 27 90 3.8E-9 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CS348_22135 9faa7b4abb2fcd17467f384db8332650 257 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 250 4.7E-34 T 13-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 CS348_01790 df216a8d94a39104f6f722f3f7a665f2 1965 SUPERFAMILY SSF103515 1730 1964 1.7E-21 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CS348_01790 df216a8d94a39104f6f722f3f7a665f2 1965 SMART SM00869 1691 1954 0.0032 T 13-10-2018 IPR005546 Autotransporter beta-domain CS348_04595 976c87fdb75fc10aa3fef458c490a283 141 Pfam PF03479 Domain of unknown function (DUF296) 13 118 7.1E-21 T 13-10-2018 IPR005175 PPC domain CS348_04595 976c87fdb75fc10aa3fef458c490a283 141 SUPERFAMILY SSF117856 8 139 3.92E-34 T 13-10-2018 CS348_04595 976c87fdb75fc10aa3fef458c490a283 141 Gene3D G3DSA:3.30.1330.80 11 141 6.1E-51 T 13-10-2018 CS348_10660 b19887a22b03d50c95e55a648b231ff6 266 Pfam PF03609 PTS system sorbose-specific iic component 6 237 4.8E-75 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 CS348_10660 b19887a22b03d50c95e55a648b231ff6 266 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 266 6.5E-129 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 CS348_03985 67d81e6a79f02de3602f08c316a14464 254 Pfam PF14348 Domain of unknown function (DUF4400) 56 251 5.9E-67 T 13-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type CS348_03985 67d81e6a79f02de3602f08c316a14464 254 TIGRFAM TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family 21 254 2.1E-92 T 13-10-2018 IPR022266 Integrating conjugative element protein, PFL4697-type CS348_06185 9ac73021379ff81b311b8289a24a5430 309 Pfam PF04393 Protein of unknown function (DUF535) 30 305 1.0E-91 T 13-10-2018 IPR007488 Protein of unknown function DUF535 CS348_04440 571d60d74c4589cfac1ebb20a7a0d091 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 1.5E-69 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 CS348_04440 571d60d74c4589cfac1ebb20a7a0d091 197 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 51.36 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 CS348_04440 571d60d74c4589cfac1ebb20a7a0d091 197 SUPERFAMILY SSF52972 1 195 1.52E-74 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_04440 571d60d74c4589cfac1ebb20a7a0d091 197 Pfam PF01725 Ham1 family 4 192 1.3E-56 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 CS348_04440 571d60d74c4589cfac1ebb20a7a0d091 197 Gene3D G3DSA:3.90.950.10 1 197 1.8E-83 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CS348_16720 7f49a29b31f0f5f17b30bfcb641cbaa2 68 Pfam PF10725 Protein of unknown function (DUF2517) 4 63 1.2E-35 T 13-10-2018 IPR019663 Uncharacterised protein YbfA CS348_16015 1c6ca6b3e46d2d73008af36b0cfab96c 57 Pfam PF07995 Glucose / Sorbosone dehydrogenase 3 46 3.0E-9 T 13-10-2018 IPR012938 Glucose/Sorbosone dehydrogenase CS348_16015 1c6ca6b3e46d2d73008af36b0cfab96c 57 Gene3D G3DSA:2.120.10.30 1 50 1.1E-10 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CS348_00200 10d09d121ff37d640752f063d4babfea 29 TIGRFAM TIGR04459 TisB_tox: type I toxin-antitoxin system toxin TisB 1 29 3.1E-19 T 13-10-2018 IPR025211 Toxin TisB, type I toxin-antitoxin system GO:0005253|GO:0005887|GO:0009432|GO:0022611 CS348_00200 10d09d121ff37d640752f063d4babfea 29 Pfam PF13939 Toxin TisB, type I toxin-antitoxin system 1 28 8.8E-18 T 13-10-2018 IPR025211 Toxin TisB, type I toxin-antitoxin system GO:0005253|GO:0005887|GO:0009432|GO:0022611 CS348_13570 8700bf5f73039f4c0dc3324afa6250a0 223 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 33 116 2.5E-7 T 13-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly CS348_13570 8700bf5f73039f4c0dc3324afa6250a0 223 Pfam PF14301 Domain of unknown function (DUF4376) 110 215 3.0E-18 T 13-10-2018 IPR025484 Domain of unknown function DUF4376 CS348_23305 7f4eb7098b0e645557d74ef04ffbc600 813 Pfam PF10145 Phage-related minor tail protein 239 440 8.1E-37 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_23305 7f4eb7098b0e645557d74ef04ffbc600 813 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 199 548 2.4E-99 T 13-10-2018 IPR010090 Phage tail tape measure protein CS348_16310 abf674d1d1841ed1ba233d250c0e4065 161 Gene3D G3DSA:3.30.70.640 1 161 5.6E-72 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16310 abf674d1d1841ed1ba233d250c0e4065 161 Pfam PF01967 MoaC family 15 150 5.0E-55 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16310 abf674d1d1841ed1ba233d250c0e4065 161 SUPERFAMILY SSF55040 11 155 1.27E-61 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16310 abf674d1d1841ed1ba233d250c0e4065 161 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 36.702 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16310 abf674d1d1841ed1ba233d250c0e4065 161 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 6.5E-74 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CS348_16060 d33d1db21042cb9c1015070fdeed3b87 171 SUPERFAMILY SSF51621 3 56 1.38E-10 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_16060 d33d1db21042cb9c1015070fdeed3b87 171 Gene3D G3DSA:3.20.20.60 1 59 3.5E-14 T 13-10-2018 CS348_16060 d33d1db21042cb9c1015070fdeed3b87 171 Gene3D G3DSA:3.20.20.60 60 170 1.7E-24 T 13-10-2018 CS348_16060 d33d1db21042cb9c1015070fdeed3b87 171 SUPERFAMILY SSF51621 59 125 6.73E-10 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CS348_16060 d33d1db21042cb9c1015070fdeed3b87 171 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 6 54 1.2E-7 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 SUPERFAMILY SSF46689 191 237 1.21E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 SMART SM00342 155 237 5.0E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 191 233 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 206 221 1.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 221 237 1.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 Gene3D G3DSA:1.10.10.60 139 246 6.0E-24 T 13-10-2018 CS348_25605 fddf6d4cf440df3c98f85ba39b00d180 247 Pfam PF12833 Helix-turn-helix domain 162 236 1.8E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CS348_20315 bf8ebaa8fcfdaebdb6ab28c428490430 237 Pfam PF03981 Ubiquinol-cytochrome C chaperone 58 220 6.0E-23 T 13-10-2018 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 CS348_20315 bf8ebaa8fcfdaebdb6ab28c428490430 237 Pfam PF13099 Domain of unknown function (DUF3944) 5 39 2.7E-17 T 13-10-2018 IPR025217 Domain of unknown function DUF3944 CS348_00475 ffc841696c19a7c3aedd635bfb22025d 569 Pfam PF05170 AsmA family 1 540 2.1E-26 T 13-10-2018 IPR007844 AsmA CS348_15375 3ec927691f3d55d2262c6f9525d75340 473 Gene3D G3DSA:1.20.1740.10 4 458 1.5E-20 T 13-10-2018 CS348_15375 3ec927691f3d55d2262c6f9525d75340 473 Pfam PF13520 Amino acid permease 11 447 7.4E-30 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_15375 3ec927691f3d55d2262c6f9525d75340 473 PIRSF PIRSF006060 1 472 3.9E-52 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_07765 9fa84c06b28313f55f1bce94e41764a2 82 SMART SM00530 12 64 1.8E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CS348_07765 9fa84c06b28313f55f1bce94e41764a2 82 SUPERFAMILY SSF47413 1 72 4.57E-30 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CS348_07765 9fa84c06b28313f55f1bce94e41764a2 82 Gene3D G3DSA:1.10.260.40 2 72 6.6E-33 T 13-10-2018 CS348_07765 9fa84c06b28313f55f1bce94e41764a2 82 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 73 7.9E-32 T 13-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain CS348_02410 d529b6bb0ca5d7f67889b6cedbd44140 90 SUPERFAMILY SSF52038 1 89 1.31E-27 T 13-10-2018 IPR035905 Barstar-like superfamily CS348_02410 d529b6bb0ca5d7f67889b6cedbd44140 90 Gene3D G3DSA:3.30.370.10 1 90 1.3E-40 T 13-10-2018 IPR035905 Barstar-like superfamily CS348_12060 44bbc49acc3446af575ea86932b2c0de 497 PIRSF PIRSF006060 23 487 8.0E-64 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_12060 44bbc49acc3446af575ea86932b2c0de 497 Pfam PF00324 Amino acid permease 35 476 2.7E-129 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_12060 44bbc49acc3446af575ea86932b2c0de 497 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_12060 44bbc49acc3446af575ea86932b2c0de 497 Gene3D G3DSA:1.20.1740.10 26 484 2.9E-60 T 13-10-2018 CS348_19570 35a9d2c5610155fd669e7931727fbf45 457 Gene3D G3DSA:1.20.1740.10 10 457 2.7E-62 T 13-10-2018 CS348_19570 35a9d2c5610155fd669e7931727fbf45 457 PIRSF PIRSF006060 1 454 3.0E-77 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CS348_19570 35a9d2c5610155fd669e7931727fbf45 457 ProSitePatterns PS00218 Amino acid permeases signature. 44 74 - T 13-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 CS348_19570 35a9d2c5610155fd669e7931727fbf45 457 Pfam PF00324 Amino acid permease 19 452 2.5E-124 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CS348_06000 3b71d04924a7cdcd32cbb4659c8b9c1e 354 SUPERFAMILY SSF161098 142 324 7.98E-44 T 13-10-2018 IPR035906 MetI-like superfamily CS348_06000 3b71d04924a7cdcd32cbb4659c8b9c1e 354 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 163 324 9.2E-26 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_06000 3b71d04924a7cdcd32cbb4659c8b9c1e 354 Gene3D G3DSA:1.10.3720.10 139 329 7.5E-37 T 13-10-2018 IPR035906 MetI-like superfamily CS348_13980 22d2ba14c0b7bb7b101b825d5fce682b 82 Pfam PF04226 Transglycosylase associated protein 33 81 5.5E-16 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 CS348_15890 b2a2f16b9cb75cefaa5aa80bae526f15 495 Gene3D G3DSA:3.40.720.10 3 394 1.2E-65 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_15890 b2a2f16b9cb75cefaa5aa80bae526f15 495 Pfam PF00884 Sulfatase 4 335 3.7E-32 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_15890 b2a2f16b9cb75cefaa5aa80bae526f15 495 SUPERFAMILY SSF53649 4 479 1.45E-76 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_25050 3d41b8c596e34a8d0cc59e62060848aa 348 Pfam PF12293 Putative outer membrane core complex of type IVb secretion 100 342 1.2E-69 T 13-10-2018 IPR022073 Putative outer membrane core complex of type IVb secretion CS348_21545 54486c2c6d987f472d10232d61c67add 402 Pfam PF07690 Major Facilitator Superfamily 14 353 6.1E-52 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_21545 54486c2c6d987f472d10232d61c67add 402 Gene3D G3DSA:1.20.1250.20 4 400 5.9E-62 T 13-10-2018 CS348_21545 54486c2c6d987f472d10232d61c67add 402 SUPERFAMILY SSF103473 6 398 2.09E-65 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01285 92cf804f752668e1b7ec664b7c4e3139 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 39.504 T 13-10-2018 IPR019598 Universal stress protein B CS348_01285 92cf804f752668e1b7ec664b7c4e3139 111 Pfam PF10625 Universal stress protein B (UspB) 1 107 5.9E-54 T 13-10-2018 IPR019598 Universal stress protein B CS348_09070 f3ef90156dc97527ccb2b79c79e5487f 379 Pfam PF02563 Polysaccharide biosynthesis/export protein 82 165 6.1E-27 T 13-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CS348_09070 f3ef90156dc97527ccb2b79c79e5487f 379 Pfam PF10531 SLBB domain 173 222 1.9E-6 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CS348_09070 f3ef90156dc97527ccb2b79c79e5487f 379 Gene3D G3DSA:3.10.560.10 53 344 1.3E-122 T 13-10-2018 CS348_09070 f3ef90156dc97527ccb2b79c79e5487f 379 Gene3D G3DSA:1.20.5.70 347 379 4.1E-19 T 13-10-2018 CS348_09070 f3ef90156dc97527ccb2b79c79e5487f 379 Gene3D G3DSA:3.10.560.10 66 254 1.3E-122 T 13-10-2018 CS348_09070 f3ef90156dc97527ccb2b79c79e5487f 379 Gene3D G3DSA:3.30.1950.10 88 169 1.3E-122 T 13-10-2018 CS348_18955 e85024fead923e95f94800f36ed6d0b4 627 Pfam PF05947 Type VI secretion system, TssF 6 624 2.7E-207 T 13-10-2018 IPR010272 Type VI secretion system, TssF-like CS348_18955 e85024fead923e95f94800f36ed6d0b4 627 PIRSF PIRSF028304 1 627 1.7E-162 T 13-10-2018 IPR010272 Type VI secretion system, TssF-like CS348_18955 e85024fead923e95f94800f36ed6d0b4 627 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 625 1.7E-185 T 13-10-2018 IPR010272 Type VI secretion system, TssF-like CS348_01680 c2fb2faeb028352db36ec2dfc4a9b337 569 Pfam PF13687 Domain of unknown function (DUF4153) 150 388 1.4E-33 T 13-10-2018 IPR025291 Protein of unknown function DUF4153 CS348_03080 d581d4c257df5e3752ff31ffd70e341a 122 Pfam PF06476 Protein of unknown function (DUF1090) 10 116 5.7E-38 T 13-10-2018 IPR009468 Protein of unknown function DUF1090 CS348_13575 951966a65f18d434e5d4b44f4cadc271 124 Pfam PF07087 Protein of unknown function (DUF1353) 18 109 2.0E-32 T 13-10-2018 IPR010767 Campylobacter phage CGC-2007, Cje0229 CS348_01425 b4d9aeb7c17fbdae4cafef8682bd1a57 425 Pfam PF11862 Domain of unknown function (DUF3382) 6 103 9.5E-25 T 13-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal CS348_01425 b4d9aeb7c17fbdae4cafef8682bd1a57 425 Pfam PF02653 Branched-chain amino acid transport system / permease component 113 398 6.7E-59 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CS348_20520 eed835641892f9521e381c5fb9c486a3 172 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 57 171 4.4E-32 T 13-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly CS348_00045 b421ef328c68b3cf10b9f3f2e4e579ed 379 Gene3D G3DSA:2.40.160.50 99 378 8.8E-14 T 13-10-2018 CS348_00045 b421ef328c68b3cf10b9f3f2e4e579ed 379 Pfam PF01103 Surface antigen 113 379 2.5E-10 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 CS348_13350 3d8631ed5ad1ff11f32eae3316320ff0 63 Pfam PF10636 Hemin uptake protein hemP 27 63 2.6E-15 T 13-10-2018 IPR019600 Hemin uptake protein HemP CS348_13350 3d8631ed5ad1ff11f32eae3316320ff0 63 Gene3D G3DSA:2.10.70.10 22 63 1.2E-22 T 13-10-2018 CS348_24655 ae11bde2cfdbe7cfd9ab00a2e3eb3d0b 371 Pfam PF11740 Plasmid replication region DNA-binding N-term 8 133 1.4E-18 T 13-10-2018 IPR021104 KfrA, N-terminal DNA-binding domain CS348_21745 7e60a89a98cf1a9d8a82fa39d0604614 212 Pfam PF06693 Protein of unknown function (DUF1190) 67 211 1.1E-20 T 13-10-2018 IPR009576 Biofilm formation YgiB CS348_13220 5aad8ba0110006d1dc68874b07bd1c67 423 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 135 409 2.8E-85 T 13-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 CS348_13220 5aad8ba0110006d1dc68874b07bd1c67 423 Pfam PF01458 Uncharacterized protein family (UPF0051) 170 393 8.8E-70 T 13-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 CS348_13220 5aad8ba0110006d1dc68874b07bd1c67 423 SUPERFAMILY SSF101960 12 420 3.66E-113 T 13-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CS348_00610 240517098b9046cca3e35b92ff72fa00 265 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 20 230 7.6E-65 T 13-10-2018 CS348_00610 240517098b9046cca3e35b92ff72fa00 265 SUPERFAMILY SSF56112 44 201 7.28E-8 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CS348_00610 240517098b9046cca3e35b92ff72fa00 265 PIRSF PIRSF037318 1 265 1.1E-168 T 13-10-2018 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP GO:0009103|GO:0016301 CS348_10960 690b0130230aa0b150040b69ec9a4ae5 269 Pfam PF13369 Transglutaminase-like superfamily 34 184 8.5E-41 T 13-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 CS348_10960 690b0130230aa0b150040b69ec9a4ae5 269 Pfam PF13371 Tetratricopeptide repeat 187 259 5.5E-26 T 13-10-2018 CS348_03550 99156be3c20e901bcb5ed7d52a116dbd 392 Pfam PF03916 Polysulphide reductase, NrfD 45 330 1.5E-18 T 13-10-2018 IPR005614 NrfD family CS348_21955 bfdd233c31ac98ed3e0e3ab7acad6f35 285 Pfam PF15922 YjeJ-like 1 282 4.9E-150 T 13-10-2018 IPR031810 YjeJ-like CS348_23970 d61fe0f77ec29c9b3497660ffdc6ce1c 270 SUPERFAMILY SSF53474 34 264 6.31E-49 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_23970 d61fe0f77ec29c9b3497660ffdc6ce1c 270 Gene3D G3DSA:3.40.50.1820 27 265 3.2E-76 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_23970 d61fe0f77ec29c9b3497660ffdc6ce1c 270 Pfam PF01738 Dienelactone hydrolase family 42 265 4.3E-77 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 CS348_18885 60e9d41167cbed4c193990587df0d6d4 185 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 11 173 6.4E-25 T 13-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 CS348_09805 59d0ba6356429fd900882ee0c632081b 81 Pfam PF09926 Uncharacterized small protein (DUF2158) 29 68 2.5E-7 T 13-10-2018 IPR019226 Protein of unknown function DUF2158 CS348_01715 ecc3ef483662f91c0519bb05ef289036 259 SUPERFAMILY SSF53067 33 164 1.68E-5 T 13-10-2018 CS348_18575 dc1d556a10d3da130613d5a629e0b544 467 PIRSF PIRSF006446 1 457 3.0E-220 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_18575 dc1d556a10d3da130613d5a629e0b544 467 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 8 436 1.9E-165 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_25330 faf887a907681b2d191dcdf5bbbd6c42 331 Pfam PF06834 TraU protein 31 330 2.6E-111 T 13-10-2018 IPR009649 TraU CS348_25700 b7ad27e5c8293874e4d8721c90ddbf65 109 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 14 99 1.9E-22 T 13-10-2018 IPR009241 Toxin HigB-like CS348_13065 e8b8c09b55ac723dcd579c1382b5e7ab 138 Pfam PF09621 Type III secretion system regulator (LcrR) 6 58 1.4E-4 T 13-10-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 CS348_25190 4f450fb6403b57d3724f42f667bda8b0 181 SUPERFAMILY SSF82679 8 112 1.44E-10 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_25190 4f450fb6403b57d3724f42f667bda8b0 181 Gene3D G3DSA:3.30.70.940 9 163 2.8E-10 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CS348_09420 358e8168dffcc38c0f56b7e892d7b9c3 91 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 87 9.0E-25 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml CS348_09420 358e8168dffcc38c0f56b7e892d7b9c3 91 SUPERFAMILY SSF159133 1 89 8.37E-27 T 13-10-2018 IPR036677 EutN/Ccml superfamily CS348_09420 358e8168dffcc38c0f56b7e892d7b9c3 91 Gene3D G3DSA:2.40.50.220 1 91 2.3E-31 T 13-10-2018 IPR036677 EutN/Ccml superfamily CS348_09420 358e8168dffcc38c0f56b7e892d7b9c3 91 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 87 1.0E-29 T 13-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml CS348_23590 daa31f0921f8c605ec4428c44a160c0f 366 Pfam PF12889 Protein of unknown function (DUF3829) 88 364 1.2E-86 T 13-10-2018 IPR024291 Protein of unknown function DUF3829 CS348_25840 7ddb9d3a3f2dd2b4243fc2a878874c5d 454 Pfam PF06122 Conjugative relaxosome accessory transposon protein 29 376 6.0E-112 T 13-10-2018 IPR010927 Type IV conjugative transfer system protein TraH CS348_13105 7230c31749506b60e99be9c862a33082 403 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 12 400 1.8E-104 T 13-10-2018 IPR012843 Type III secretion system YscD/HrpQ CS348_13105 7230c31749506b60e99be9c862a33082 403 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 153 390 3.0E-14 T 13-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain CS348_04015 25df3457ca13496792fbe3249d722d7c 285 Pfam PF11920 Protein of unknown function (DUF3438) 7 280 3.4E-106 T 13-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 CS348_04015 25df3457ca13496792fbe3249d722d7c 285 TIGRFAM TIGR03749 conj_TIGR03749: integrating conjugative element protein, PFL_4704 family 11 273 7.3E-99 T 13-10-2018 IPR021844 Integrating conjugative element protein, PFL4704 CS348_01195 0e8f8767be0bce829d7eec7be5304ba8 342 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 57 331 1.5E-130 T 13-10-2018 IPR005274 Inner membrane protein YhjD CS348_01195 0e8f8767be0bce829d7eec7be5304ba8 342 Pfam PF03631 Virulence factor BrkB 71 330 1.0E-49 T 13-10-2018 IPR017039 Virulence factor BrkB CS348_01195 0e8f8767be0bce829d7eec7be5304ba8 342 PIRSF PIRSF035875 42 334 2.1E-23 T 13-10-2018 IPR017039 Virulence factor BrkB CS348_15110 c10158d95a9b4068824a7a1453f39786 220 Hamap MF_00789 UPF0319 protein YccT [yccT]. 3 216 26.187 T 13-10-2018 IPR018635 Uncharacterised protein family UPF0319 CS348_15110 c10158d95a9b4068824a7a1453f39786 220 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 22 213 9.2E-44 T 13-10-2018 IPR018635 Uncharacterised protein family UPF0319 CS348_14735 96d0be3da1e61bfc98350d1c4ea221ab 108 Pfam PF10610 Thin aggregative fimbriae synthesis protein 6 103 9.4E-46 T 13-10-2018 IPR014491 Curli production protein CsgC CS348_14735 96d0be3da1e61bfc98350d1c4ea221ab 108 Gene3D G3DSA:2.60.40.2420 10 108 3.2E-38 T 13-10-2018 CS348_14735 96d0be3da1e61bfc98350d1c4ea221ab 108 PIRSF PIRSF018100 1 108 1.0E-66 T 13-10-2018 IPR014491 Curli production protein CsgC CS348_15855 e0b91be38acf7981ee5a050306604b6f 171 Pfam PF12883 Protein of unknown function (DUF3828) 40 154 4.7E-22 T 13-10-2018 IPR024289 Domain of unknown function DUF3828 CS348_21990 1fc7b6510a314c50ba279c35b93cb97b 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 3.5E-144 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_21990 1fc7b6510a314c50ba279c35b93cb97b 433 PIRSF PIRSF004539 1 433 5.7E-179 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_21990 1fc7b6510a314c50ba279c35b93cb97b 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 9.3E-205 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 CS348_11575 c9a5301cf316c9ea1a26ffc2a9b038f9 78 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 71 6.6E-17 T 13-10-2018 IPR010305 Protein of unknown function DUF903 CS348_11575 c9a5301cf316c9ea1a26ffc2a9b038f9 78 Gene3D G3DSA:2.30.30.100 20 77 5.2E-17 T 13-10-2018 CS348_11575 c9a5301cf316c9ea1a26ffc2a9b038f9 78 SUPERFAMILY SSF50182 22 71 5.45E-14 T 13-10-2018 IPR010920 LSM domain superfamily CS348_13620 4f80bc5009b5ee87cec09acfc01c679b 46 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 1 44 1.0E-6 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_13620 4f80bc5009b5ee87cec09acfc01c679b 46 Pfam PF01848 Hok/gef family 8 44 1.2E-14 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_13620 4f80bc5009b5ee87cec09acfc01c679b 46 PRINTS PR00281 Hok/Gef cell toxic protein family signature 3 21 1.1E-5 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_13620 4f80bc5009b5ee87cec09acfc01c679b 46 PRINTS PR00281 Hok/Gef cell toxic protein family signature 23 45 1.1E-5 T 13-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 CS348_20980 84bd14e7be92ab7498a7b51cbd43d0be 67 Pfam PF04328 Selenoprotein, putative 5 67 6.2E-28 T 13-10-2018 IPR007423 Selenoprotein, putative CS348_03845 280c30b69951905903a75ea4752e8e41 197 TIGRFAM TIGR03021 pilP_fam: type IV pilus biogenesis protein PilP 69 190 1.8E-29 T 13-10-2018 IPR022753 Type IV pilus biogenesis PilP CS348_14490 30094477d99da3484a63d159ce918a7c 173 Pfam PF02620 Uncharacterized ACR, COG1399 61 171 2.3E-18 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CS348_22125 4898b66fb3d7a80d6c68e2e84819b2fb 466 Pfam PF09362 Domain of unknown function (DUF1996) 40 265 1.1E-37 T 13-10-2018 IPR018535 Domain of unknown function DUF1996 CS348_23030 d3b9470b1a17f02484e14b4ff9edec20 577 Pfam PF00884 Sulfatase 238 529 4.8E-42 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CS348_23030 d3b9470b1a17f02484e14b4ff9edec20 577 SUPERFAMILY SSF53649 236 554 3.74E-29 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CS348_23030 d3b9470b1a17f02484e14b4ff9edec20 577 Gene3D G3DSA:3.40.720.10 226 562 5.3E-64 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CS348_04065 1834549c3fa1940c02efa6ee0c8aef8e 165 Pfam PF11143 Protein of unknown function (DUF2919) 9 145 1.8E-18 T 13-10-2018 IPR021318 Protein of unknown function DUF2919 CS348_03790 756f31df471a50f8fee541735895c7f4 279 TIGRFAM TIGR03761 ICE_PFL4669: integrating conjugative element protein, PFL_4669 family 22 239 2.2E-65 T 13-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 CS348_03790 756f31df471a50f8fee541735895c7f4 279 Pfam PF08900 Domain of unknown function (DUF1845) 20 236 2.8E-66 T 13-10-2018 IPR014996 Integrating conjugative element protein, PFL4669 CS348_20925 4709c8afe296106eb762dc84757bc566 163 Pfam PF10696 Protein of unknown function (DUF2501) 83 161 4.5E-27 T 13-10-2018 IPR019637 Protein of unknown function DUF2501 CS348_23695 5f4e247704dfcbbb28364aed9c9de1d0 285 Gene3D G3DSA:2.70.98.10 11 283 5.2E-55 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 CS348_23695 5f4e247704dfcbbb28364aed9c9de1d0 285 SUPERFAMILY SSF74650 13 282 1.44E-53 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 CS348_23695 5f4e247704dfcbbb28364aed9c9de1d0 285 Pfam PF01263 Aldose 1-epimerase 12 281 9.4E-48 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 CS348_17465 8c2c6468b7afde332d8d60db3dca513e 215 Pfam PF06805 Bacteriophage lambda tail assembly protein I 14 97 1.1E-21 T 13-10-2018 IPR010654 Bacteriophage lambda tail assembly I CS348_20290 81020777b974853da0b18b27084dc636 114 Pfam PF16083 LydA holin phage, holin superfamily III 21 100 3.8E-24 T 13-10-2018 IPR032126 LydA-like holin CS348_04870 cf67e2293f081bfde8f3a75072a7fb41 90 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 4.8E-20 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CS348_04870 cf67e2293f081bfde8f3a75072a7fb41 90 Gene3D G3DSA:1.20.58.1000 1 90 4.3E-26 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily CS348_13020 623ae83e1f80ff41a2f17413e34d5604 224 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 29 206 3.6E-44 T 13-10-2018 IPR012842 Type III secretion system HrpE/YscL CS348_24815 92ea22c586b157e78c45ec9c76d661aa 144 Gene3D G3DSA:3.40.50.11880 3 144 1.3E-55 T 13-10-2018 IPR038131 Protein PsiB-like superfamily CS348_24815 92ea22c586b157e78c45ec9c76d661aa 144 Pfam PF06290 Plasmid SOS inhibition protein (PsiB) 5 143 6.1E-73 T 13-10-2018 IPR009385 Protein PsiB CS348_21385 de7c26fd7155c2190688dae43d3f3048 214 Pfam PF14187 Domain of unknown function (DUF4310) 4 211 1.9E-108 T 13-10-2018 IPR025456 Protein of unknown function DUF4310 CS348_21385 de7c26fd7155c2190688dae43d3f3048 214 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 5 213 1.0E-118 T 13-10-2018 IPR025456 Protein of unknown function DUF4310 CS348_20530 dbd55da40a706b2aec4e5b4947e3a6dc 192 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 18 120 3.2E-10 T 13-10-2018 IPR006521 Tail protein I CS348_20530 dbd55da40a706b2aec4e5b4947e3a6dc 192 Pfam PF09684 Phage tail protein (Tail_P2_I) 16 162 4.3E-30 T 13-10-2018 IPR006521 Tail protein I CS348_02870 13d7d0af9fd1b76a7c6120bf2495dcf5 167 SUPERFAMILY SSF55729 1 159 7.09E-25 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_02870 13d7d0af9fd1b76a7c6120bf2495dcf5 167 Gene3D G3DSA:3.40.630.30 1 167 3.5E-54 T 13-10-2018 CS348_02870 13d7d0af9fd1b76a7c6120bf2495dcf5 167 Pfam PF13508 Acetyltransferase (GNAT) domain 45 123 7.6E-11 T 13-10-2018 IPR000182 GNAT domain CS348_08980 54e96f2310e6a4aae87bf5ca3f927603 238 Pfam PF06889 Protein of unknown function (DUF1266) 79 229 4.3E-19 T 13-10-2018 IPR009677 Protein of unknown function DUF1266 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 SUPERFAMILY SSF51658 4 438 2.02E-173 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 9.9E-218 T 13-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 156 175 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 207 226 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 133 153 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 180 201 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 271 298 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 92 114 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 300 311 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 333 344 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 PRINTS PR00688 Xylose isomerase signature 229 253 3.4E-85 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 Gene3D G3DSA:3.20.20.150 2 440 7.0E-183 T 13-10-2018 CS348_00910 7d6ec6ff2b0f08675938d20abd8bc55b 440 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 53.392 T 13-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 CS348_00130 85ddcfbab38967be5a9a989d568ec66e 408 SUPERFAMILY SSF82171 18 404 6.28E-20 T 13-10-2018 CS348_00130 85ddcfbab38967be5a9a989d568ec66e 408 Gene3D G3DSA:2.120.10.30 213 407 3.2E-13 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CS348_00130 85ddcfbab38967be5a9a989d568ec66e 408 Pfam PF12566 Protein of unknown function (DUF3748) 63 179 7.3E-54 T 13-10-2018 IPR022223 Protein of unknown function DUF3748 CS348_08585 d4d60f5eff1d4b9f91a1b9526bf3e0fc 221 Pfam PF13807 G-rich domain on putative tyrosine kinase 148 206 2.4E-10 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain CS348_03060 75e613e70398aaf2f7d602e1beef539e 161 Pfam PF07681 DoxX 39 118 7.0E-18 T 13-10-2018 IPR032808 DoxX family CS348_25375 2ebaa223e00c1e22a262d5617f6f0df6 246 TIGRFAM TIGR02756 TraK_Ftype: type-F conjugative transfer system secretin TraK 12 229 3.1E-42 T 13-10-2018 IPR014126 Type-F conjugative transfer system secretin TraK CS348_25375 2ebaa223e00c1e22a262d5617f6f0df6 246 Pfam PF06586 TraK protein 24 235 5.3E-46 T 13-10-2018 IPR010563 Pilus assembly TraK CS348_06250 363543e06751b27011513f74bfcc03ff 68 Gene3D G3DSA:1.10.238.160 7 64 3.8E-7 T 13-10-2018 CS348_06250 363543e06751b27011513f74bfcc03ff 68 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 7 56 4.9E-20 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CS348_02680 03c2355150ee07a06f0cb2a357e8f9f5 183 Pfam PF02470 MlaD protein 39 116 1.8E-22 T 13-10-2018 IPR003399 Mce/MlaD CS348_02680 03c2355150ee07a06f0cb2a357e8f9f5 183 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 153 7.9E-56 T 13-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 CS348_02495 4f343bd66a0a0e0834a474cec7d196ed 374 Pfam PF03969 AFG1-like ATPase 5 371 3.6E-162 T 13-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 CS348_02495 4f343bd66a0a0e0834a474cec7d196ed 374 SUPERFAMILY SSF52540 70 208 1.02E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_02495 4f343bd66a0a0e0834a474cec7d196ed 374 Gene3D G3DSA:3.40.50.300 7 203 2.7E-19 T 13-10-2018 CS348_02495 4f343bd66a0a0e0834a474cec7d196ed 374 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 374 53.467 T 13-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 CS348_11750 5340c20a674fbdbd136c9886e8658212 107 PIRSF PIRSF025560 1 107 2.2E-44 T 13-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 CS348_11750 5340c20a674fbdbd136c9886e8658212 107 Pfam PF07027 Protein of unknown function (DUF1318) 19 107 3.7E-31 T 13-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 CS348_01105 02e426fd0b41912964594b27e8691ded 43 Pfam PF13940 Toxin Ldr, type I toxin-antitoxin system 9 43 3.7E-23 T 13-10-2018 IPR025253 Type I toxin-antitoxin system, toxin Ldr CS348_25140 33ad7ac40ff1192959cd2bbdd15a6ad5 295 Pfam PF06864 Pilin accessory protein (PilO) 2 293 4.8E-53 T 13-10-2018 IPR009663 Pilin accessory predicted CS348_14745 539aa9d73cb9850b23ae3c0fc357ac92 151 Pfam PF07012 Curlin associated repeat 75 106 2.3E-9 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_14745 539aa9d73cb9850b23ae3c0fc357ac92 151 Pfam PF07012 Curlin associated repeat 71 97 1.7E-6 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_14745 539aa9d73cb9850b23ae3c0fc357ac92 151 Pfam PF07012 Curlin associated repeat 97 130 2.4E-10 T 13-10-2018 IPR009742 Curlin associated GO:0007155|GO:0009289 CS348_12770 02164d9c510292d9b89d874cbdbde0f4 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 6.8E-61 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CS348_12770 02164d9c510292d9b89d874cbdbde0f4 193 PIRSF PIRSF006102 1 193 1.5E-60 T 13-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 CS348_12770 02164d9c510292d9b89d874cbdbde0f4 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.511 T 13-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 CS348_12770 02164d9c510292d9b89d874cbdbde0f4 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 3.0E-92 T 13-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 CS348_21395 44555f571ad0f51622e0d36eff0ef0ad 100 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 3 97 7.1E-44 T 13-10-2018 IPR020037 Protein of unknown function DUF4312 CS348_21395 44555f571ad0f51622e0d36eff0ef0ad 100 Pfam PF14189 Domain of unknown function (DUF4312) 6 89 4.6E-35 T 13-10-2018 IPR020037 Protein of unknown function DUF4312 CS348_10485 ce823361b45220e3b0349559a971848a 304 SUPERFAMILY SSF103481 187 287 3.92E-5 T 13-10-2018 CS348_10485 ce823361b45220e3b0349559a971848a 304 SUPERFAMILY SSF103481 40 140 1.27E-14 T 13-10-2018 CS348_10485 ce823361b45220e3b0349559a971848a 304 Pfam PF00892 EamA-like transporter family 152 286 3.2E-21 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_10485 ce823361b45220e3b0349559a971848a 304 Pfam PF00892 EamA-like transporter family 7 138 1.9E-27 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CS348_05805 100a85c3553bff637406abc400cb8163 136 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 4 133 2.5E-55 T 13-10-2018 IPR010005 Formate hydrogenlyase maturation HycH CS348_05805 100a85c3553bff637406abc400cb8163 136 ProDom PD021295 MATURATION HYDROGENLYASE FORMATE HYCH LYASE HYCE PROCESSING OXIDOREDUCTASE J COMPONENT 1 134 1.0E-75 T 13-10-2018 IPR010005 Formate hydrogenlyase maturation HycH CS348_00155 65d4b445e9e241a92021600871a81201 115 Pfam PF02656 Domain of unknown function (DUF202) 13 79 1.8E-16 T 13-10-2018 IPR003807 Domain of unknown function DUF202 CS348_15365 ded9886e15eea4ac07b08792333ac127 319 Pfam PF11047 Salmonella outer protein D 1 319 5.6E-180 T 13-10-2018 IPR022747 Salmonella outer protein D GO:0009405|GO:0033644 CS348_15365 ded9886e15eea4ac07b08792333ac127 319 ProDom PD040905 SECRETED SOPD SOP POSSIBLE HOMOLOGOUS FAMILY EFFECTOR THE TRANSFERRED VIRULENCE 1 319 4.0E-165 T 13-10-2018 IPR022747 Salmonella outer protein D GO:0009405|GO:0033644 CS348_15365 ded9886e15eea4ac07b08792333ac127 319 Gene3D G3DSA:3.30.2440.10 27 149 1.1E-6 T 13-10-2018 CS348_03690 46c1e28484f4249424088c8fd5ce53dc 185 Pfam PF11354 Protein of unknown function (DUF3156) 17 174 1.7E-64 T 13-10-2018 IPR021500 Protein of unknown function DUF3156 CS348_25860 3ef69f7cf49fad62b7329955b326b377 170 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 2 140 4.4E-48 T 13-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN CS348_18630 c9b55f051434131b23fab0c15b42d726 119 Pfam PF13698 Domain of unknown function (DUF4156) 19 117 6.6E-34 T 13-10-2018 IPR025294 Protein of unknown function DUF4156 CS348_15950 f3d824d7d97a3671e4a7b8d473e990a8 96 Pfam PF07214 Protein of unknown function (DUF1418) 1 93 3.2E-41 T 13-10-2018 IPR010815 Protein of unknown function DUF1418 CS348_06790 c97741b5b5598c1b3e71b1c7fca2d50d 212 Pfam PF06226 Protein of unknown function (DUF1007) 9 211 2.4E-61 T 13-10-2018 IPR010412 Protein of unknown function DUF1007 CS348_06790 c97741b5b5598c1b3e71b1c7fca2d50d 212 PIRSF PIRSF008159 1 212 2.2E-73 T 13-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, CS348_01175 a6536e106090b9024de6e2b311c39154 309 Gene3D G3DSA:3.40.1190.20 1 309 9.9E-94 T 13-10-2018 IPR029056 Ribokinase-like CS348_01175 a6536e106090b9024de6e2b311c39154 309 Pfam PF00294 pfkB family carbohydrate kinase 3 303 1.8E-72 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CS348_01175 a6536e106090b9024de6e2b311c39154 309 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 258 271 - T 13-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 CS348_01175 a6536e106090b9024de6e2b311c39154 309 SUPERFAMILY SSF53613 2 303 1.47E-73 T 13-10-2018 IPR029056 Ribokinase-like CS348_04190 f60cf1e881d070b1a7d9aa5b6a8e174c 127 Pfam PF06476 Protein of unknown function (DUF1090) 15 119 4.9E-30 T 13-10-2018 IPR009468 Protein of unknown function DUF1090 CS348_04710 a372bb7a6d68d614fe58169858213f0d 297 Pfam PF13557 Putative MetA-pathway of phenol degradation 90 270 7.6E-11 T 13-10-2018 IPR025737 MetA-pathway of phenol degradation, putative CS348_18805 2e77c18544b9263f73fa3a46eca74dea 135 Gene3D G3DSA:1.20.120.1490 33 135 1.0E-13 T 13-10-2018 CS348_14665 e0f9f46e27944676181913c4425364ee 190 SUPERFAMILY SSF81342 5 180 4.0E-36 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CS348_14665 e0f9f46e27944676181913c4425364ee 190 Pfam PF01292 Prokaryotic cytochrome b561 9 180 4.4E-25 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CS348_25285 af57e043a47b9a970b905589bf6f0d63 117 Gene3D G3DSA:1.10.287.700 70 117 5.7E-6 T 13-10-2018 CS348_03350 a59ecc7bbee03a1862b8217b30dcbbfb 193 Pfam PF02525 Flavodoxin-like fold 3 188 8.8E-36 T 13-10-2018 IPR003680 Flavodoxin-like fold CS348_03350 a59ecc7bbee03a1862b8217b30dcbbfb 193 SUPERFAMILY SSF52218 1 192 7.96E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_03350 a59ecc7bbee03a1862b8217b30dcbbfb 193 Gene3D G3DSA:3.40.50.360 1 193 2.8E-63 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CS348_10055 eb65e6c8a66eff53d5afc92d273f9cbd 79 TIGRFAM TIGR03853 matur_matur: putative metal-binding protein 3 79 7.2E-35 T 13-10-2018 IPR019620 Putative metal-binding protein CS348_10055 eb65e6c8a66eff53d5afc92d273f9cbd 79 Pfam PF10678 Protein of unknown function (DUF2492) 3 78 2.4E-35 T 13-10-2018 IPR019620 Putative metal-binding protein CS348_12530 92e9051a091e22090d9bb79c36149a3a 186 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 1.4E-20 T 13-10-2018 IPR000182 GNAT domain CS348_12530 92e9051a091e22090d9bb79c36149a3a 186 SUPERFAMILY SSF55729 6 164 1.66E-41 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CS348_12530 92e9051a091e22090d9bb79c36149a3a 186 Gene3D G3DSA:3.40.630.30 5 174 9.9E-52 T 13-10-2018 CS348_07330 f929de97e531be31ce3825024623f3a6 149 Pfam PF11143 Protein of unknown function (DUF2919) 6 145 8.0E-47 T 13-10-2018 IPR021318 Protein of unknown function DUF2919 CS348_15980 4ddd5ea67c0807b301ae94bd9064b31f 403 Pfam PF07690 Major Facilitator Superfamily 223 386 1.9E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_15980 4ddd5ea67c0807b301ae94bd9064b31f 403 Gene3D G3DSA:1.20.1250.20 210 389 1.9E-30 T 13-10-2018 CS348_15980 4ddd5ea67c0807b301ae94bd9064b31f 403 SUPERFAMILY SSF103473 11 389 5.89E-45 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_15980 4ddd5ea67c0807b301ae94bd9064b31f 403 Gene3D G3DSA:1.20.1250.20 13 198 1.1E-15 T 13-10-2018 CS348_09865 d5da3e82c7fa138f47441b817fdabf0f 155 Pfam PF03748 Flagellar basal body-associated protein FliL 57 153 2.7E-20 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 CS348_17545 ad8bb9f7166ab4446838f314376c7e89 163 Pfam PF07278 Protein of unknown function (DUF1441) 9 156 2.2E-66 T 13-10-2018 IPR009901 Bacteriophage VT1-Sakai, H0025 CS348_04235 8f0b734f1d4b64249cb7685931815e97 64 Pfam PF06688 Protein of unknown function (DUF1187) 6 63 1.4E-20 T 13-10-2018 IPR009572 Protein of unknown function DUF1187 CS348_04235 8f0b734f1d4b64249cb7685931815e97 64 ProDom PD055514 YDAC STY2075 PLASMID YHEB ECS1931 6 63 4.0E-11 T 13-10-2018 IPR009572 Protein of unknown function DUF1187 CS348_24000 e83e052d8a92cf3c6db6f1426cf8a986 338 Gene3D G3DSA:3.40.50.1820 29 330 5.7E-39 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_24000 e83e052d8a92cf3c6db6f1426cf8a986 338 Pfam PF12146 Serine aminopeptidase, S33 53 312 1.8E-56 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CS348_24000 e83e052d8a92cf3c6db6f1426cf8a986 338 SUPERFAMILY SSF53474 33 328 1.77E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CS348_04450 d9a6e38dc7be23d1467be7460d0ea369 188 Pfam PF02325 YGGT family 10 78 2.4E-22 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 CS348_04450 d9a6e38dc7be23d1467be7460d0ea369 188 Pfam PF02325 YGGT family 104 167 4.5E-16 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 CS348_13245 a6b0c07b2e88938987b87d75eb9ae24a 75 Pfam PF15930 Domain of unknown function 14 75 1.9E-40 T 13-10-2018 IPR031830 Uncharacterised protein YdiH CS348_06170 a60c39355423aaed19719735092ec057 337 Pfam PF03824 High-affinity nickel-transport protein 38 323 2.4E-95 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 CS348_06170 a60c39355423aaed19719735092ec057 337 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 41 318 3.8E-133 T 13-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 CS348_18890 735acfe47ed38112491a522c8ad294e6 360 Pfam PF04865 Baseplate J-like protein 68 324 2.2E-59 T 13-10-2018 IPR006949 Baseplate protein J-like CS348_08575 124b3781ee1cae33032e8abfff58b0e6 84 Pfam PF03692 Putative zinc- or iron-chelating domain 2 56 4.1E-5 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein CS348_22025 516142769469c378212513b34842bf19 282 SUPERFAMILY SSF50956 44 280 1.96E-26 T 13-10-2018 CS348_22025 516142769469c378212513b34842bf19 282 Pfam PF06977 SdiA-regulated 33 277 7.4E-75 T 13-10-2018 IPR009722 SdiA-regulated CS348_10075 f8141af782cfdf3719809baa3af21994 167 SUPERFAMILY SSF47240 5 158 4.29E-36 T 13-10-2018 IPR009078 Ferritin-like superfamily CS348_10075 f8141af782cfdf3719809baa3af21994 167 Pfam PF00210 Ferritin-like domain 8 142 1.3E-22 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CS348_10075 f8141af782cfdf3719809baa3af21994 167 Gene3D G3DSA:1.20.1260.10 2 165 1.7E-26 T 13-10-2018 IPR012347 Ferritin-like CS348_21980 7f9292e1d34dda7456a8cc64c7001c41 171 Pfam PF04186 FxsA cytoplasmic membrane protein 21 122 5.7E-33 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 CS348_09510 b343b9530730afdb39026f9b2cc8d9c3 201 Gene3D G3DSA:3.40.1010.10 1 101 1.7E-21 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CS348_09510 b343b9530730afdb39026f9b2cc8d9c3 201 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 179 1.7E-27 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CS348_09510 b343b9530730afdb39026f9b2cc8d9c3 201 SUPERFAMILY SSF53790 1 199 5.89E-41 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CS348_09510 b343b9530730afdb39026f9b2cc8d9c3 201 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 4 195 3.5E-66 T 13-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 CS348_12840 fc0aec36ff74a94c0b8104996ec94e58 155 Pfam PF05433 Glycine zipper 2TM domain 62 102 1.1E-7 T 13-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 CS348_11550 6decdae43d0c4e5a947a455bdc3e6b31 309 Gene3D G3DSA:3.40.50.720 12 225 1.2E-31 T 13-10-2018 CS348_11550 6decdae43d0c4e5a947a455bdc3e6b31 309 SUPERFAMILY SSF51735 11 281 3.04E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CS348_11550 6decdae43d0c4e5a947a455bdc3e6b31 309 Pfam PF05368 NmrA-like family 13 246 1.3E-18 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 CS348_11550 6decdae43d0c4e5a947a455bdc3e6b31 309 Gene3D G3DSA:3.90.25.10 165 273 1.2E-31 T 13-10-2018 CS348_01065 24a333d9a0fa5358ed3eda4f2c6be74a 441 Pfam PF00860 Permease family 19 395 2.2E-52 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CS348_17520 8a16ffd7696fff46c63039e996d24f96 107 Pfam PF09956 Uncharacterized conserved protein (DUF2190) 3 105 5.9E-24 T 13-10-2018 IPR011231 Bacteriophage VT1-Sakai, H0018 CS348_17520 8a16ffd7696fff46c63039e996d24f96 107 PIRSF PIRSF030771 1 107 2.7E-46 T 13-10-2018 IPR011231 Bacteriophage VT1-Sakai, H0018 CS348_16600 b53ebacd69ff5ca1b254102a850f0501 97 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 17 95 2.7E-32 T 13-10-2018 IPR011846 Cyd operon protein YbgE CS348_16600 b53ebacd69ff5ca1b254102a850f0501 97 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 5 97 6.1E-41 T 13-10-2018 IPR011846 Cyd operon protein YbgE CS348_00925 05f3d4bb76af8830af123e17c0e32687 331 Pfam PF01757 Acyltransferase family 6 318 4.9E-34 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 CS348_00925 05f3d4bb76af8830af123e17c0e32687 331 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 331 37.717 T 13-10-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 CS348_21675 13bfd230d4e7dc673933b7a9960d9623 185 Pfam PF07274 Protein of unknown function (DUF1440) 29 163 1.5E-50 T 13-10-2018 IPR009898 Protein of unknown function DUF1440 CS348_23405 28162bdf74fbaaf68d172bffc4c5fa24 355 Pfam PF05125 Phage major capsid protein, P2 family 8 340 5.6E-146 T 13-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid CS348_23405 28162bdf74fbaaf68d172bffc4c5fa24 355 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 8 340 1.4E-94 T 13-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid CS348_20645 1ec5a37d840a4cd234f7407c7dfc0608 181 Pfam PF11985 Protein of unknown function (DUF3486) 1 178 5.3E-53 T 13-10-2018 IPR021874 Bacteriophage Mu, Gp27 CS348_08860 2e0ce5df6a8661199159161d35eeff7a 155 Pfam PF07308 Protein of unknown function (DUF1456) 86 149 2.4E-19 T 13-10-2018 IPR009921 Domain of unknown function DUF1456 CS348_08860 2e0ce5df6a8661199159161d35eeff7a 155 Pfam PF07308 Protein of unknown function (DUF1456) 4 70 4.3E-23 T 13-10-2018 IPR009921 Domain of unknown function DUF1456 CS348_01130 5bb9a62201b1f6f03dea79a74512eb95 250 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 236 7.1E-107 T 13-10-2018 IPR017746 Cellulose synthase operon protein BcsQ CS348_01130 5bb9a62201b1f6f03dea79a74512eb95 250 SUPERFAMILY SSF52540 3 235 2.18E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CS348_01130 5bb9a62201b1f6f03dea79a74512eb95 250 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 238 1.3E-78 T 13-10-2018 IPR017746 Cellulose synthase operon protein BcsQ CS348_01130 5bb9a62201b1f6f03dea79a74512eb95 250 Gene3D G3DSA:3.40.50.300 3 240 5.2E-26 T 13-10-2018 CS348_21230 943fb0999ad857d616bdb08dfaa7380c 395 Pfam PF05987 Bacterial protein of unknown function (DUF898) 13 370 7.7E-54 T 13-10-2018 IPR010295 Protein of unknown function DUF898 CS348_17490 8ae674387f39811adb3d9ae77f9cbcbf 112 Pfam PF06223 Minor tail protein T 10 109 1.9E-51 T 13-10-2018 IPR009350 Minor tail T CS348_17490 8ae674387f39811adb3d9ae77f9cbcbf 112 TIGRFAM TIGR01715 phage_lam_T: phage tail assembly protein T 4 109 1.0E-51 T 13-10-2018 IPR009350 Minor tail T CS348_23520 f4c8a51f0f076c192bec967fcc934bff 171 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 153 2.0E-29 T 13-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ CS348_08130 075387c7afa1ad9fbcc40958d87d0a93 125 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 1 125 20.478 T 13-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF CS348_16615 ae3bc39acadc86764f694fe153babe5d 522 PIRSF PIRSF006446 1 328 2.1E-113 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_16615 ae3bc39acadc86764f694fe153babe5d 522 PIRSF PIRSF006446 354 522 1.0E-28 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_16615 ae3bc39acadc86764f694fe153babe5d 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 1.2E-173 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CS348_09155 3aa8a16abf195ecec82ba6c8e14d7ed4 426 TIGRFAM TIGR04006 wcaK: colanic acid biosynthesis pyruvyl transferase WcaK 1 425 4.4E-265 T 13-10-2018 IPR023918 Colanic acid biosynthesis, pyruvyl transferase, WcaK CS348_09155 3aa8a16abf195ecec82ba6c8e14d7ed4 426 Pfam PF04230 Polysaccharide pyruvyl transferase 13 356 1.1E-36 T 13-10-2018 IPR007345 Polysaccharide pyruvyl transferase CS348_19295 0f116208899c338984112d1ad5f96c08 207 Pfam PF03458 UPF0126 domain 92 161 8.3E-19 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 CS348_19295 0f116208899c338984112d1ad5f96c08 207 Pfam PF03458 UPF0126 domain 4 78 2.1E-23 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 CS348_17890 240d5c6bfba3b54abe61e82636123cc8 406 Gene3D G3DSA:1.20.1250.20 19 204 9.3E-21 T 13-10-2018 CS348_17890 240d5c6bfba3b54abe61e82636123cc8 406 SUPERFAMILY SSF103473 20 401 1.24E-54 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_17890 240d5c6bfba3b54abe61e82636123cc8 406 Pfam PF07690 Major Facilitator Superfamily 31 265 1.1E-23 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_17890 240d5c6bfba3b54abe61e82636123cc8 406 Gene3D G3DSA:1.20.1250.20 219 405 1.1E-20 T 13-10-2018 CS348_04370 67f2dcc13a4c146b8149ec3f9695b0c0 235 Pfam PF04474 Protein of unknown function (DUF554) 3 227 2.0E-66 T 13-10-2018 IPR007563 Protein of unknown function DUF554 CS348_09695 1ee0437e84167c2802b8c3e4571efc6c 108 Pfam PF07377 Protein of unknown function (DUF1493) 1 108 3.8E-44 T 13-10-2018 IPR010862 Protein of unknown function DUF1493 CS348_21405 38ea6f1200d61e2ecc416158d63b08e6 112 SUPERFAMILY SSF63520 12 109 1.44E-9 T 13-10-2018 IPR036634 PRD domain superfamily GO:0006355 CS348_21405 38ea6f1200d61e2ecc416158d63b08e6 112 Gene3D G3DSA:1.10.1790.10 5 112 6.2E-35 T 13-10-2018 CS348_21405 38ea6f1200d61e2ecc416158d63b08e6 112 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 6 111 2.2E-46 T 13-10-2018 IPR020044 PRD domain protein, EF0829/AHA3910 CS348_00135 0a2ec297de99fb6e20d457f1309d0a81 110 Pfam PF07119 Protein of unknown function (DUF1375) 15 77 1.1E-12 T 13-10-2018 IPR010780 Protein of unknown function DUF1375 CS348_05640 0b39efe2cd3e5ffeca436fda94c4fba5 160 Gene3D G3DSA:1.10.530.10 13 157 1.2E-22 T 13-10-2018 CS348_05640 0b39efe2cd3e5ffeca436fda94c4fba5 160 Pfam PF01464 Transglycosylase SLT domain 20 137 1.1E-33 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CS348_05640 0b39efe2cd3e5ffeca436fda94c4fba5 160 SUPERFAMILY SSF53955 15 145 1.42E-36 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CS348_02645 49f8fa2d1a9b809f83b1462e91d66d6a 184 Gene3D G3DSA:2.60.450.10 27 164 1.6E-55 T 13-10-2018 CS348_02645 49f8fa2d1a9b809f83b1462e91d66d6a 184 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 28 166 1.0E-51 T 13-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 CS348_02645 49f8fa2d1a9b809f83b1462e91d66d6a 184 Pfam PF03968 OstA-like protein 37 149 9.6E-32 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal CS348_02645 49f8fa2d1a9b809f83b1462e91d66d6a 184 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 7 167 26.67 T 13-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 CS348_24575 0dcf78f0d21aae4ea5131dccf8b79f24 251 Gene3D G3DSA:3.90.470.20 25 114 3.5E-10 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CS348_03115 778fdc0dfa24cae23b1d47dee2d773f1 230 Pfam PF02698 DUF218 domain 62 180 1.4E-21 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CS348_11635 bb75c3ff0c946b6a379560d47218cd3b 84 Pfam PF10749 Protein of unknown function (DUF2534) 4 83 4.1E-41 T 13-10-2018 IPR019685 Protein of unknown function DUF2534 CS348_00210 9d542868cecee1ed1c7cf490a86ecfc6 32 Pfam PF08049 IlvB leader peptide 1 32 1.2E-16 T 13-10-2018 IPR012566 IlvB leader peptide CS348_22265 0affb35c5b12fc3064a447f384682978 206 Gene3D G3DSA:1.25.40.10 64 206 3.6E-30 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_22265 0affb35c5b12fc3064a447f384682978 206 SUPERFAMILY SSF48452 70 179 2.69E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CS348_22265 0affb35c5b12fc3064a447f384682978 206 SMART SM00028 81 114 0.0033 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_22265 0affb35c5b12fc3064a447f384682978 206 SMART SM00028 152 185 430.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CS348_15915 884c24d383f4fa4f18ac99944345310d 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 275 1.3E-13 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CS348_15915 884c24d383f4fa4f18ac99944345310d 283 Gene3D G3DSA:1.10.3720.10 15 273 2.7E-45 T 13-10-2018 IPR035906 MetI-like superfamily CS348_15915 884c24d383f4fa4f18ac99944345310d 283 SUPERFAMILY SSF161098 8 268 3.55E-49 T 13-10-2018 IPR035906 MetI-like superfamily CS348_20950 f4053c305a826e67698e92979377ef18 259 Pfam PF03609 PTS system sorbose-specific iic component 1 233 3.2E-70 T 13-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 CS348_00985 89b110fb763de75cd803439e76a07195 179 Gene3D G3DSA:2.60.40.3700 19 179 1.4E-65 T 13-10-2018 CS348_12050 8bb9286b1f121ad3a8e28e2f8d1603d5 353 SUPERFAMILY SSF51004 38 337 1.31E-37 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily CS348_12050 8bb9286b1f121ad3a8e28e2f8d1603d5 353 Gene3D G3DSA:2.130.10.10 31 353 5.8E-128 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CS348_18395 ee0d431244c049860d7ae60e09c7b7bc 390 Gene3D G3DSA:1.20.1250.20 1 375 1.4E-40 T 13-10-2018 CS348_18395 ee0d431244c049860d7ae60e09c7b7bc 390 Pfam PF07690 Major Facilitator Superfamily 8 327 7.6E-36 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CS348_18395 ee0d431244c049860d7ae60e09c7b7bc 390 SUPERFAMILY SSF103473 3 379 1.57E-47 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_18860 86a8bb44fc03bcb1e3c85863d760345f 190 Pfam PF14301 Domain of unknown function (DUF4376) 77 182 4.2E-24 T 13-10-2018 IPR025484 Domain of unknown function DUF4376 CS348_16295 34f990143f89482543b3e13dc0148c79 234 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 230 3.0E-58 T 13-10-2018 IPR006214 Bax inhibitor 1-related CS348_12875 0087193c4f11cc8db35bdd0cc85969e0 79 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 6.6E-19 T 13-10-2018 IPR010710 Protein of unknown function DUF1289 CS348_13580 8b67eafd08ec95792fab2651dd25d48f 162 PIRSF PIRSF029208 1 156 1.2E-59 T 13-10-2018 IPR016912 Bacteriophage P2, GpU CS348_13580 8b67eafd08ec95792fab2651dd25d48f 162 Pfam PF06995 Phage P2 GpU 6 125 1.3E-38 T 13-10-2018 IPR009734 Myoviridae, GpU CS348_11280 93b17ba06111dfbd2b992b78564c561f 83 Pfam PF10692 Protein of unknown function (DUF2498) 4 81 2.0E-42 T 13-10-2018 IPR019633 Protein of unknown function DUF2498 CS348_11280 93b17ba06111dfbd2b992b78564c561f 83 Gene3D G3DSA:1.10.1900.30 9 77 1.7E-36 T 13-10-2018 IPR038191 YciN superfamily CS348_16825 9e2736bcb867bb921e4f962f6aefd8db 468 Pfam PF03573 outer membrane porin, OprD family 33 431 2.9E-23 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 CS348_16825 9e2736bcb867bb921e4f962f6aefd8db 468 Gene3D G3DSA:2.40.160.10 29 466 3.7E-33 T 13-10-2018 IPR023614 Porin domain superfamily CS348_10445 83b4c732b98a0210c8adcd369e830a6c 194 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 72 191 3.9E-32 T 13-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly CS348_22970 85f5936a4a4cc893ce730d1b133be5df 119 Pfam PF07226 Protein of unknown function (DUF1422) 3 114 7.6E-54 T 13-10-2018 IPR009867 Protein of unknown function DUF1422 CS348_22970 85f5936a4a4cc893ce730d1b133be5df 119 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 1 119 3.0E-64 T 13-10-2018 IPR009867 Protein of unknown function DUF1422 CS348_21150 56419877678d54f66b48260c97a01783 230 Pfam PF09570 SinI restriction endonuclease 11 227 7.1E-79 T 13-10-2018 IPR019070 Type II restriction endonuclease SinI GO:0003677|GO:0009036|GO:0009307 CS348_15295 1ccce76b2c9b09293a8d2d1220c9ff9e 410 Pfam PF06224 Winged helix DNA-binding domain 38 381 1.3E-83 T 13-10-2018 IPR009351 Protein of unknown function DUF1006 CS348_21760 38b2d18594cdcd5fa87150a0a376c014 232 Pfam PF04012 PspA/IM30 family 2 232 4.6E-49 T 13-10-2018 IPR007157 PspA/IM30 CS348_15595 66edf43aa87682c48f7d21ce8d144687 370 Gene3D G3DSA:2.20.70.120 276 306 1.0E-5 T 13-10-2018 CS348_13550 cf2da1b7eb9ff34d0caec25def6bbee3 122 Gene3D G3DSA:3.10.450.40 5 117 9.2E-15 T 13-10-2018 CS348_13550 cf2da1b7eb9ff34d0caec25def6bbee3 122 SUPERFAMILY SSF160719 15 113 8.37E-24 T 13-10-2018 CS348_13550 cf2da1b7eb9ff34d0caec25def6bbee3 122 Pfam PF04965 Gene 25-like lysozyme 22 100 6.0E-12 T 13-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD CS348_01785 16eb65186a578bb9e14736454a75a8ac 56 Pfam PF13978 Protein of unknown function (DUF4223) 1 54 4.3E-35 T 13-10-2018 IPR025318 Protein of unknown function DUF4223 CS348_10175 838009c3a8cb2f0ae2eb2e3a68547ae9 130 Pfam PF06366 Flagellar protein FlhE 28 130 8.4E-39 T 13-10-2018 IPR009420 Flagellar protein FlhE CS348_13415 c22fdda929bf7947bf85a335dc0315e7 67 Pfam PF06305 Lipopolysaccharide assembly protein A domain 14 55 2.1E-6 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 CS348_20575 b5daf8462f14181da8ac290cd24d6862 104 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 83 2.6E-19 T 13-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative CS348_09300 115d5a4081836103ad363b4a5bd0f9dd 16 Pfam PF08047 Histidine operon leader peptide 1 16 4.6E-10 T 13-10-2018 IPR012565 Histidine operon leader peptide GO:0000105 CS348_07760 8ff2aff0eace7563b754d8b3d7665899 122 Gene3D G3DSA:3.90.1720.10 3 121 4.0E-40 T 13-10-2018 CS348_07760 8ff2aff0eace7563b754d8b3d7665899 122 Pfam PF00877 NlpC/P60 family 23 95 8.8E-5 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain CS348_08450 bff7e24f8fab61190172afa907726658 187 Gene3D G3DSA:2.40.160.20 72 186 4.3E-9 T 13-10-2018 CS348_08450 bff7e24f8fab61190172afa907726658 187 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 88 186 2.2E-16 T 13-10-2018 IPR018550 Lipid A 3-O-deacylase-related CS348_23295 a96a4b1d6bb8f4f148ced3c93fb98aad 389 SUPERFAMILY SSF69279 16 188 2.32E-25 T 13-10-2018 CS348_23295 a96a4b1d6bb8f4f148ced3c93fb98aad 389 Pfam PF05954 Phage late control gene D protein (GPD) 44 365 2.8E-41 T 13-10-2018 CS348_25690 47e1a467bde43aa44b8f985b779249b6 260 Pfam PF10263 SprT-like family 16 115 6.4E-6 T 13-10-2018 IPR006640 SprT-like CS348_11370 98504d09a4a9d6d0b9185ea5e35d4b1c 59 Hamap MF_01641 UPF0509 protein YciZ [yciZ]. 1 59 26.702 T 13-10-2018 IPR020887 Uncharacterised protein family UPF0509 CS348_25325 ed36bfb47f7763fd3698ef601dd2b091 203 TIGRFAM TIGR02742 TrbC_Ftype: type-F conjugative transfer system pilin assembly protein TrbC 88 201 4.7E-30 T 13-10-2018 IPR014113 Type-F conjugative transfer system pilin assembly protein TrbC, subgroup CS348_25325 ed36bfb47f7763fd3698ef601dd2b091 203 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 89 170 5.3E-17 T 13-10-2018 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC CS348_10385 8db2630825b895321316b06d15b6f3b1 117 Pfam PF10709 Protein of unknown function (DUF2511) 25 112 3.2E-42 T 13-10-2018 IPR019648 Protein of unknown function DUF2511 CS348_09825 8610fcd5902050e5e4028dbf73589b47 82 Hamap MF_01549 Protein DsrB [dsrB]. 19 80 29.714 T 13-10-2018 IPR019717 Dextransucrase DSRB CS348_09825 8610fcd5902050e5e4028dbf73589b47 82 Pfam PF10781 Dextransucrase DSRB 19 78 6.5E-36 T 13-10-2018 IPR019717 Dextransucrase DSRB CS348_11740 f736dbd65b8fc20478fa32a6282ced8c 878 Pfam PF11739 Dicarboxylate transport 657 858 6.5E-61 T 13-10-2018 IPR021730 Dicarboxylate transport CS348_03830 3527143baf5c029d57e094c27f5819cf 145 Pfam PF07419 PilM 12 144 1.4E-31 T 13-10-2018 IPR009987 PilM, inner membrane CS348_03830 3527143baf5c029d57e094c27f5819cf 145 Gene3D G3DSA:3.30.450.360 23 145 4.7E-40 T 13-10-2018 CS348_15690 0460f7597056ca259f7ffe60178165f8 576 Gene3D G3DSA:3.40.50.300 33 257 2.7E-16 T 13-10-2018 CS348_15690 0460f7597056ca259f7ffe60178165f8 576 Pfam PF03354 Phage Terminase 84 559 1.5E-69 T 13-10-2018 IPR005021 Terminase large subunit, Lambdalikevirus-type CS348_05240 d7eec759768960155906657632732508 98 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 90 2.3E-10 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CS348_05240 d7eec759768960155906657632732508 98 Gene3D G3DSA:3.30.2310.20 1 95 1.8E-18 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CS348_04300 5f1be45a3c5712a530700aa0a3fd4532 108 Pfam PF11284 Protein of unknown function (DUF3085) 21 106 2.3E-27 T 13-10-2018 IPR021436 Protein of unknown function DUF3085 CS348_18485 044e6f729b26494527bf164b447ad989 364 Pfam PF07759 Protein of unknown function (DUF1615) 50 364 5.5E-148 T 13-10-2018 IPR011673 Protein of unknown function DUF1615 CS348_18485 044e6f729b26494527bf164b447ad989 364 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 13 364 0.0 T 13-10-2018 IPR011673 Protein of unknown function DUF1615 CS348_20610 b59f09c106093bf2d665309b1baf628a 118 Pfam PF09956 Uncharacterized conserved protein (DUF2190) 31 113 5.0E-6 T 13-10-2018 IPR011231 Bacteriophage VT1-Sakai, H0018 CS348_09365 069c12090749e352c8d0b8b683dccee3 352 Pfam PF04632 Fusaric acid resistance protein family 21 338 1.6E-17 T 13-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 CS348_03800 34d0a6f2e92524edbb07378eebf135b4 149 Pfam PF12101 Protein of unknown function (DUF3577) 2 131 2.3E-52 T 13-10-2018 IPR021960 Protein of unknown function DUF3577 CS348_20995 962516496e3bdbbfc79e71d4b9be2655 213 Pfam PF01810 LysE type translocator 21 206 6.5E-25 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CS348_17965 8855e136465b05fe5a58ac2f4f2feb76 55 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 8.0E-23 T 13-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related CS348_01490 08cc6d5b4c59c6a836bd3e5724cefc3b 323 SUPERFAMILY SSF103473 11 254 4.84E-5 T 13-10-2018 IPR036259 MFS transporter superfamily CS348_01490 08cc6d5b4c59c6a836bd3e5724cefc3b 323 Pfam PF04657 Putative inner membrane exporter, YdcZ 10 154 2.1E-31 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CS348_01490 08cc6d5b4c59c6a836bd3e5724cefc3b 323 Pfam PF04657 Putative inner membrane exporter, YdcZ 169 303 8.7E-16 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CS348_24865 a299b9204f14d0aec4ee4e2c9836d7dc 277 Pfam PF06067 Domain of unknown function (DUF932) 37 266 4.7E-57 T 13-10-2018 IPR026325 Protein of unknown function DUF932 CS348_15610 601265b89c2d5c2c8f57680f97ebdd49 137 Pfam PF07409 Phage protein GP46 19 129 1.3E-40 T 13-10-2018 IPR010877 Bacteriophage Mu, Gp46 CS348_24610 416a808f4fc13ba68768cf7d39153fcd 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.163 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_24610 416a808f4fc13ba68768cf7d39153fcd 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 CS348_24610 416a808f4fc13ba68768cf7d39153fcd 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 31 4.0E-11 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_24610 416a808f4fc13ba68768cf7d39153fcd 46 Pfam PF00468 Ribosomal protein L34 1 44 1.7E-24 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_24610 416a808f4fc13ba68768cf7d39153fcd 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.6E-27 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CS348_10065 4831b04d11a0d7ab6b07b056850f9ef0 111 Pfam PF13992 YecR-like lipoprotein 26 98 1.4E-27 T 13-10-2018 IPR025731 YecR-like lipoprotein CS348_18445 371ce7b886f4c53544568b0f7f8d01c2 106 Pfam PF07769 psiF repeat 71 103 6.1E-17 T 13-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat CS348_18445 371ce7b886f4c53544568b0f7f8d01c2 106 Pfam PF07769 psiF repeat 27 59 2.9E-17 T 13-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat CS348_20260 988b830570b60978dfb42322a51e1d02 180 Pfam PF00419 Fimbrial protein 35 179 2.3E-20 T 13-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 CS348_20260 988b830570b60978dfb42322a51e1d02 180 Gene3D G3DSA:2.60.40.1090 32 180 1.7E-41 T 13-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 CS348_20260 988b830570b60978dfb42322a51e1d02 180 SUPERFAMILY SSF49401 33 179 7.46E-36 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_07750 0c4e4bfe223c8691788c4496e90245d7 218 Pfam PF02517 CAAX protease self-immunity 116 206 2.0E-16 T 13-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 CS348_01290 ffde89fa237add91c7bd2cdfef7d7a0b 498 Pfam PF01384 Phosphate transporter family 30 487 1.2E-85 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 CS348_15810 7fb7ea17f50beb76578dc29ea03da400 244 Pfam PF10543 ORF6N domain 14 87 1.2E-16 T 13-10-2018 IPR018873 KilA-N, DNA-binding domain CS348_04210 e9828f44ff548f512e2ed9f5fd20dac6 468 TIGRFAM TIGR03755 conj_TIGR03755: integrating conjugative element protein, PFL_4711 family 41 464 1.3E-164 T 13-10-2018 IPR021204 Integrating conjugative element protein, PFL4711 CS348_12850 1347f1f47734f47f5d2ec3da8ac79e4b 78 Pfam PF07869 Protein of unknown function (DUF1656) 19 70 8.9E-15 T 13-10-2018 IPR012451 Protein of unknown function DUF1656 CS348_25275 c206f482141beea0bd786928e59d3a68 97 Pfam PF13997 YqjK-like protein 14 87 1.5E-15 T 13-10-2018 IPR025612 YqjK-like protein CS348_10870 0b9cee9ac8c1fe7ca544fa0b2c02e0ca 134 Pfam PF07449 Hydrogenase-1 expression protein HyaE 10 116 5.6E-44 T 13-10-2018 IPR010893 [NiFe]-hydrogenase maturation factor HyaE CS348_10870 0b9cee9ac8c1fe7ca544fa0b2c02e0ca 134 SUPERFAMILY SSF52833 6 127 2.98E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CS348_10870 0b9cee9ac8c1fe7ca544fa0b2c02e0ca 134 Gene3D G3DSA:3.40.30.10 1 133 9.6E-42 T 13-10-2018 CS348_18965 a6bfa1c785e34471dfd4f614deabb2dc 349 Pfam PF06812 ImpA, N-terminal, type VI secretion system 7 136 8.6E-30 T 13-10-2018 IPR010657 ImpA, N-terminal CS348_03870 32d37bab467df0f32395947f7e348daa 219 Pfam PF01478 Type IV leader peptidase family 79 174 2.2E-7 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CS348_22310 b4ea048076c4c7683c0e41536a2aa95d 104 Pfam PF04341 Protein of unknown function, DUF485 11 98 5.6E-33 T 13-10-2018 IPR007436 Protein of unknown function DUF485 CS348_14770 b46805ddff4379b9c51edb14dc601518 176 Pfam PF06496 Protein of unknown function (DUF1097) 24 157 2.7E-38 T 13-10-2018 IPR009476 Protein of unknown function DUF1097 CS348_09190 7864b4eced45fdd5a2838081951fd267 410 Pfam PF14897 EpsG family 40 370 8.8E-14 T 13-10-2018 CS348_13455 d353ba434cedd38d02f7ff7517bbbcbd 834 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 189 505 3.2E-94 T 13-10-2018 IPR008766 Replication gene A protein GO:0006260 CS348_25495 e7fd08c874b54031bd63a64353fb062c 144 Pfam PF11140 Protein of unknown function (DUF2913) 16 106 9.2E-5 T 13-10-2018 IPR021316 Protein of unknown function DUF2913 CS348_01730 855c20644669e64706d7a19ab2a6e737 133 Pfam PF10748 Protein of unknown function (DUF2531) 4 133 4.2E-69 T 13-10-2018 IPR019684 HofP protein CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 Pfam PF02108 Flagellar assembly protein FliH 103 226 2.5E-41 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 60 82 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 163 190 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 191 207 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 83 101 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 102 121 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 5 24 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 140 162 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 208 233 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_09885 fb8b87fb014be2047af2267ab62fd492 235 PRINTS PR01003 Flagellar assembly protein FliH signature 122 139 9.1E-121 T 13-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 CS348_03665 ca7ae9dde69dc1e33153d9d4ae00f6aa 126 Pfam PF04965 Gene 25-like lysozyme 22 110 5.1E-10 T 13-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD CS348_03665 ca7ae9dde69dc1e33153d9d4ae00f6aa 126 Hamap MF_02010 Anti-adapter protein IraD [iraD]. 1 126 41.527 T 13-10-2018 IPR023776 Anti-adapter protein, IraD GO:0006974|GO:0043856 CS348_13160 09d59f53c068ee71e785cafa5c20a5a9 340 Pfam PF03916 Polysulphide reductase, NrfD 10 290 4.5E-59 T 13-10-2018 IPR005614 NrfD family CS348_24080 c790b2fa07dae95dce3f0a91e43a3b6b 67 Pfam PF13627 Prokaryotic lipoprotein-attachment site 7 29 1.1E-9 T 13-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site CS348_07540 91a0ef8fd39d883422fd01dea28eea62 62 SUPERFAMILY SSF47598 14 57 3.16E-6 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 CS348_25835 d5f8f32e2699ff3984ff5b340fd8c484 1091 Pfam PF07916 TraG-like protein, N-terminal region 3 453 2.1E-103 T 13-10-2018 IPR012931 TraG-like, N-terminal CS348_22325 fe47157c42fc0906d710211da7e7f958 136 Pfam PF03788 LrgA family 31 122 2.3E-25 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 CS348_17245 1b9f56ff58deb0d44007ae401014c858 701 Pfam PF02554 Carbon starvation protein CstA 32 403 9.0E-168 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 CS348_17245 1b9f56ff58deb0d44007ae401014c858 701 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 469 596 4.3E-35 T 13-10-2018 IPR025299 CstA, C-terminal domain CS348_13600 a8c956d1203af8db811153a10bb58249 170 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 4 168 1.2E-33 T 13-10-2018 IPR006498 Tail tube protein CS348_13600 a8c956d1203af8db811153a10bb58249 170 Pfam PF04985 Phage tail tube protein FII 4 168 6.0E-51 T 13-10-2018 IPR006498 Tail tube protein CS348_03900 99e9cf8dccf5f9a4a383bdf1718c8672 362 Pfam PF13729 F plasmid transfer operon, TraF, protein 16 280 7.4E-69 T 13-10-2018 IPR032811 Putative conjugal transfer protein TraF-related CS348_19945 48c0b6c508d37eeba724b7ef51c6b4a4 96 SUPERFAMILY SSF159871 1 92 2.62E-25 T 13-10-2018 IPR036275 YdgH-like superfamily CS348_19945 48c0b6c508d37eeba724b7ef51c6b4a4 96 Gene3D G3DSA:3.30.1660.10 25 93 7.7E-27 T 13-10-2018 IPR025543 Dodecin-like CS348_19945 48c0b6c508d37eeba724b7ef51c6b4a4 96 Pfam PF07338 Protein of unknown function (DUF1471) 35 92 1.1E-18 T 13-10-2018 IPR010854 Domain of unknown function DUF1471 CS348_12620 5c350267689c499a8c08d17ade634af3 94 Pfam PF06392 Acid shock protein repeat 54 72 1.0E-7 T 13-10-2018 IPR009435 Acid shock GO:0010447|GO:0042597 CS348_03065 582b06b4e2c0a10de7587f684d370d8a 99 Pfam PF13997 YqjK-like protein 14 86 1.4E-27 T 13-10-2018 IPR025612 YqjK-like protein CS348_01000 4e9808c3ef3670976c74e8b0e8564c7d 236 Pfam PF11254 Protein of unknown function (DUF3053) 14 230 5.1E-93 T 13-10-2018 IPR021413 Protein of unknown function DUF3053 CS348_21040 87fa87fe0f8e129d78e7da5aa3556bd0 223 Pfam PF07670 Nucleoside recognition 81 160 9.6E-6 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CS348_00935 59705356cbb4bbb8a0db07d6bc226620 100 Pfam PF13983 YsaB-like lipoprotein 26 100 3.7E-43 T 13-10-2018 IPR025728 YsaB-like lipoprotein CS348_05095 d2bdcbef2224cad6cb9a9793469b83d7 131 Pfam PF04241 Protein of unknown function (DUF423) 20 106 4.4E-23 T 13-10-2018 IPR006696 Protein of unknown function DUF423 CS348_04430 81b23a44330a737a2a3cd63e7eef3f9f 335 Pfam PF06717 Protein of unknown function (DUF1202) 14 320 1.1E-196 T 13-10-2018 IPR009592 Protein of unknown function DUF1202 CS348_17590 76ae6fb8f3b02365ad7c3f3cdbac4c8e 330 Gene3D G3DSA:1.10.10.10 1 40 3.3E-6 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CS348_03490 b29c5ba9a898a6a46c388759f831ceef 244 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 11 222 4.3E-101 T 13-10-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0016020|GO:0022857|GO:0055085 CS348_03490 b29c5ba9a898a6a46c388759f831ceef 244 Pfam PF01618 MotA/TolQ/ExbB proton channel family 82 205 9.4E-35 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CS348_09990 2755671e3f7dc988eb1edf4cc398737a 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 7.1E-39 T 13-10-2018 CS348_23410 0803ead33a0698adf88374475e12b5eb 284 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 6 284 4.6E-106 T 13-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 CS348_14505 690d8a2aeb5a98d3015a992ffff78f93 247 Pfam PF11254 Protein of unknown function (DUF3053) 12 240 2.4E-74 T 13-10-2018 IPR021413 Protein of unknown function DUF3053 CS348_10895 73bbb7bfafa8e2b266ee8ea0679275c6 421 Pfam PF14468 Protein of unknown function (DUF4427) 284 415 9.9E-71 T 13-10-2018 IPR025216 Domain of unknown function DUF4427 CS348_08840 1bc06b357960b6e24b92833f2cd9fbf5 35 Hamap MF_01362 UPF0387 membrane protein YohO [yohO]. 1 35 15.738 T 13-10-2018 IPR020870 Uncharacterised protein family UPF0387, membrane GO:0005886 CS348_18850 b1632cf0665601057118bb40e8a0907b 63 Pfam PF10122 Mu-like prophage protein Com 2 40 2.2E-14 T 13-10-2018 IPR019294 Translational regulator Com CS348_00265 c09aa26795b2e489ec0a2e434ecc2df2 150 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 145 5.0E-80 T 13-10-2018 IPR009587 Protein of unknown function DUF1198 CS348_00265 c09aa26795b2e489ec0a2e434ecc2df2 150 Pfam PF06711 Protein of unknown function (DUF1198) 1 143 2.9E-70 T 13-10-2018 IPR009587 Protein of unknown function DUF1198 CS348_05305 fc799be83f3a8eb2140b5db8732b31bc 317 Pfam PF11047 Salmonella outer protein D 1 316 5.2E-190 T 13-10-2018 IPR022747 Salmonella outer protein D GO:0009405|GO:0033644 CS348_05305 fc799be83f3a8eb2140b5db8732b31bc 317 ProDom PD040905 SECRETED SOPD SOP POSSIBLE HOMOLOGOUS FAMILY EFFECTOR THE TRANSFERRED VIRULENCE 1 317 0.0 T 13-10-2018 IPR022747 Salmonella outer protein D GO:0009405|GO:0033644 CS348_24885 5508aaceba7ecd76a00fe54831409f32 651 Pfam PF03432 Relaxase/Mobilisation nuclease domain 88 305 2.2E-38 T 13-10-2018 IPR005094 Endonuclease relaxase, MobA/VirD2 CS348_11445 d014f7abd7fc59ba3127375209ca197f 60 Pfam PF05766 Bacteriophage Lambda NinG protein 1 55 1.9E-8 T 13-10-2018 IPR008713 Bacteriophage lambda NinG CS348_23460 29a57867a54b552cbfcb160b677d664c 74 Pfam PF10809 Protein of unknown function (DUF2732) 13 65 1.2E-17 T 13-10-2018 IPR020126 Protein of unknown function DUF2732 CS348_04850 f5dcb6579ebe4df42d3cc66b661ffd31 360 SUPERFAMILY SSF49401 224 360 2.09E-7 T 13-10-2018 IPR008966 Adhesion domain superfamily CS348_18430 e3d750703dba159f0730d1590fc95b68 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 33.01 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 CS348_18430 e3d750703dba159f0730d1590fc95b68 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 143 2.2E-49 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 CS348_17375 528636f7ecc652eeadd66e5be8ccdcb5 391 SUPERFAMILY SSF46565 222 289 1.7E-5 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CS348_19530 fb1c182a46052a927fb7c966a90d946d 531 Pfam PF11737 Protein of unknown function (DUF3300) 61 335 3.6E-87 T 13-10-2018 IPR021728 Protein of unknown function DUF3300 CS348_21300 2100621c52cda6f4c1b8e46b4a9233ef 33 PIRSF PIRSF003249 1 33 1.0E-25 T 13-10-2018 IPR012602 PyrBI operon leader peptide GO:0019856 CS348_21300 2100621c52cda6f4c1b8e46b4a9233ef 33 Pfam PF08052 PyrBI operon leader peptide 1 33 1.9E-21 T 13-10-2018 IPR012602 PyrBI operon leader peptide GO:0019856 CS348_24880 a7fbf377ccb597369834dbcb781a59b8 101 Pfam PF01402 Ribbon-helix-helix protein, copG family 15 48 7.0E-6 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 CS348_10850 ebf82718ba14970b382c84fb3c34e303 29 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.0E-11 T 13-10-2018 IPR012994 Membrane bound YbgT-like CS348_12560 36821d1b122e11da9a757e61283ac81b 285 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 275 2.8E-104 T 13-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 CS348_15175 572e0a94b4ebe3b9fbe5847aa7342019 546 Pfam PF02470 MlaD protein 285 389 5.4E-14 T 13-10-2018 IPR003399 Mce/MlaD CS348_15175 572e0a94b4ebe3b9fbe5847aa7342019 546 Pfam PF02470 MlaD protein 158 222 1.2E-7 T 13-10-2018 IPR003399 Mce/MlaD CS348_15175 572e0a94b4ebe3b9fbe5847aa7342019 546 Pfam PF02470 MlaD protein 42 133 2.9E-9 T 13-10-2018 IPR003399 Mce/MlaD CS348_05155 92e5a7b202bd6744f2db7603d7045b0c 429 TIGRFAM TIGR00814 stp: serine transporter 18 418 3.2E-185 T 13-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 CS348_15600 54caff6eb7ac3d9ea6479c5daa799783 195 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 11 186 1.3E-41 T 13-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 CS348_23950 8e7907252f305c1cccab9d932c09e8c4 201 Pfam PF02036 SCP-2 sterol transfer family 15 112 5.9E-21 T 13-10-2018 IPR003033 SCP2 sterol-binding domain CS348_23950 8e7907252f305c1cccab9d932c09e8c4 201 SUPERFAMILY SSF55718 14 111 1.53E-6 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily CS348_11180 ad318cb6261069d670441a18551cb980 247 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 246 22.107 T 13-10-2018 IPR009627 Uncharacterised protein family UPF0259 CS348_11180 ad318cb6261069d670441a18551cb980 247 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 244 9.5E-99 T 13-10-2018 IPR009627 Uncharacterised protein family UPF0259 CS348_15815 7ca8e135a7f1bc599b3aff27a775a2cb 188 Gene3D G3DSA:3.70.10.10 5 117 1.8E-6 T 13-10-2018 CS348_15815 7ca8e135a7f1bc599b3aff27a775a2cb 188 Gene3D G3DSA:3.10.150.10 65 97 1.8E-6 T 13-10-2018 CS348_09915 b0e783e342f3128ebb2d00478ebb6f19 421 Pfam PF04143 Sulphur transport 17 180 3.2E-26 T 13-10-2018 IPR007272 Sulphur transport domain CS348_09915 b0e783e342f3128ebb2d00478ebb6f19 421 Pfam PF04143 Sulphur transport 257 406 2.1E-23 T 13-10-2018 IPR007272 Sulphur transport domain CS348_10450 27cf9c523edd0371ed15f8ece25d4427 66 Pfam PF15284 Phage-encoded virulence factor 1 64 2.3E-44 T 13-10-2018 IPR029335 Phage-encoded virulence factor CS348_19840 46d5e90e4bde40907b6242f4456e3944 139 Pfam PF15942 Domain of unknown function (DUF4751) 5 125 3.1E-80 T 13-10-2018 IPR031855 Protein of unknown function DUF4751 CS348_25795 d8fe5e27fba4dcb9368e98ff890000c5 84 Pfam PF10723 Replication regulatory protein RepB 1 80 6.4E-44 T 13-10-2018 IPR019661 Replication regulatory protein RepA2 GO:0006276 CS348_03840 51ea647f89909786a1c84d6903d08487 426 Pfam PF06864 Pilin accessory protein (PilO) 22 424 1.1E-74 T 13-10-2018 IPR009663 Pilin accessory predicted CS348_16975 79f6519901b9591199f69233cc536ca8 390 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 6 388 4.8E-148 T 13-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 CS348_06450 4fb31e20265c4d8424f92bb6031e8f1a 172 Pfam PF13689 Domain of unknown function (DUF4154) 32 167 1.3E-28 T 13-10-2018 IPR025293 YfiR-like CS348_14700 31ebe0f3e0b9541ef4a304a7ab65467f 75 Pfam PF07119 Protein of unknown function (DUF1375) 9 69 1.0E-8 T 13-10-2018 IPR010780 Protein of unknown function DUF1375 CS348_05010 1cca8af8ab1b124919050ddfa1e2fc80 135 Pfam PF10713 Protein of unknown function (DUF2509) 15 132 4.6E-32 T 13-10-2018 IPR019652 Protein of unknown function DUF2509 CS348_23440 f2e8dab4d754b3e0e4bdba3026487707 761 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 133 462 6.2E-122 T 13-10-2018 IPR008766 Replication gene A protein GO:0006260 CS348_07105 080abe0a53931c77933b57d9ce032b37 355 Pfam PF01594 AI-2E family transporter 20 345 1.7E-84 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CS348_12470 9d874ba0138f4368b1f2289234564108 60 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 10 30 3.0E-10 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat CS348_12470 9d874ba0138f4368b1f2289234564108 60 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 32 52 4.2E-10 T 13-10-2018 IPR019626 Stress-induced protein, KGG, repeat CS348_22345 95d95c13bedf401643e6f2089ad43062 449 Pfam PF00860 Permease family 26 409 1.9E-86 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CS348_22045 059072670c5dfe893fdf636db533d5f1 254 Pfam PF02432 Fimbrial, major and minor subunit 29 253 6.1E-61 T 13-10-2018 IPR003467 Fimbrial, major/minor subunit GO:0007155|GO:0009289 CS348_21030 152d3bda86bf6bf7fa14f86bff16f9a6 423 Pfam PF04286 Protein of unknown function (DUF445) 44 417 2.7E-108 T 13-10-2018 IPR007383 Protein of unknown function DUF445 CS348_16960 a26aa72f575b263f58d1f62d4e1859e4 157 Pfam PF07295 Zinc-ribbon containing domain 14 154 3.5E-53 T 13-10-2018 IPR009912 Zinc-ribbon containing domain CS348_06050 b676b819544dbde6d6dd99f7368dc390 108 Pfam PF05957 Bacterial protein of unknown function (DUF883) 16 107 2.4E-24 T 13-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 CS348_06150 23625c464260cb7a2880b71a0b288c62 144 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 7 138 2.1E-19 T 13-10-2018 IPR009936 Protein of unknown function DUF1468 CS348_02475 beb00b1b4226e0f55779ed9bfd415060 232 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 115 221 1.7E-5 T 13-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 CS348_21935 ed1a9053e4a7ea049e128f7e67f4b981 48 Pfam PF08085 Entericidin EcnA/B family 23 43 2.6E-8 T 13-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 CS348_21750 6f0df9654a7ca890fb9523ec3e7adaa0 132 Pfam PF03994 Domain of Unknown Function (DUF350) 13 65 3.9E-11 T 13-10-2018 IPR007140 Protein of unknown function DUF350 CS348_21750 6f0df9654a7ca890fb9523ec3e7adaa0 132 Pfam PF03994 Domain of Unknown Function (DUF350) 78 130 4.6E-7 T 13-10-2018 IPR007140 Protein of unknown function DUF350