##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM334229v1 #!genome-build-accession NCBI_Assembly:GCA_003342295.1 ##sequence-region MH370385.1 1 43119 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2231361 MH370385.1 Genbank region 1 43119 . + . ID=id0;Dbxref=taxon:2231361;Is_circular=true;collection-date=2015;country=Denmark: Copenhagen;gbkey=Src;genome=genomic;mol_type=genomic DNA;nat-host=Salmonella enterica serotype Enteritidis E2331 MH370385.1 Genbank CDS 28 573 . + 0 ID=cds0;Dbxref=SEED:fig|6666666.177679.peg.44,NCBI_GP:AXC42384.1;Name=AXC42384.1;Note=label: orf1;gbkey=CDS;product=putative terminase small subunit;protein_id=AXC42384.1;transl_table=11 MH370385.1 Genbank CDS 563 1834 . + 0 ID=cds1;Dbxref=SEED:fig|6666666.177679.peg.45,NCBI_GP:AXC42385.1;Name=AXC42385.1;Note=label: orf2;gbkey=CDS;product=putative terminase large subunit;protein_id=AXC42385.1;transl_table=11 MH370385.1 Genbank CDS 1847 3319 . + 0 ID=cds2;Dbxref=SEED:fig|6666666.177679.peg.46,NCBI_GP:AXC42386.1;Name=AXC42386.1;Note=similarity to PDB: 2JES%2C 3LJ5%3B label: orf3;gbkey=CDS;product=putative portal protein;protein_id=AXC42386.1;transl_table=11 MH370385.1 Genbank CDS 3350 4003 . - 0 ID=cds3;Dbxref=SEED:fig|6666666.177679.peg.47,NCBI_GP:AXC42387.1;Name=AXC42387.1;Note=label: orf4;gbkey=CDS;product=hypothetical protein;protein_id=AXC42387.1;transl_table=11 MH370385.1 Genbank CDS 4225 4371 . + 0 ID=cds4;Dbxref=NCBI_GP:AXC42388.1;Name=AXC42388.1;Note=label: orf5;gbkey=CDS;product=hypothetical protein;protein_id=AXC42388.1;transl_table=11 MH370385.1 Genbank CDS 4385 5035 . - 0 ID=cds5;Dbxref=SEED:fig|6666666.177679.peg.49,NCBI_GP:AXC42389.1;Name=AXC42389.1;Note=label: orf6;gbkey=CDS;product=hypothetical protein;protein_id=AXC42389.1;transl_table=11 MH370385.1 Genbank CDS 5201 6244 . + 0 ID=cds6;Dbxref=SEED:fig|6666666.177679.peg.50,NCBI_GP:AXC42390.1;Name=AXC42390.1;Note=label: orf7;gbkey=CDS;product=putative head morphogenesis protein;protein_id=AXC42390.1;transl_table=11 MH370385.1 Genbank CDS 6247 6705 . + 0 ID=cds7;Dbxref=SEED:fig|6666666.177679.peg.51,NCBI_GP:AXC42391.1;Name=AXC42391.1;Note=label: orf8%3B putative head decoration protein (neck whiskers);gbkey=CDS;product=putative head decoration protein;protein_id=AXC42391.1;transl_table=11 MH370385.1 Genbank CDS 6859 6978 . + 0 ID=cds8;Dbxref=NCBI_GP:AXC42392.1;Name=AXC42392.1;Note=label: orf9;gbkey=CDS;product=hypothetical protein;protein_id=AXC42392.1;transl_table=11 MH370385.1 Genbank CDS 7023 7409 . + 0 ID=cds9;Dbxref=SEED:fig|6666666.177679.peg.53,NCBI_GP:AXC42393.1;Name=AXC42393.1;Note=label: orf10;gbkey=CDS;product=hypothetical protein;protein_id=AXC42393.1;transl_table=11 MH370385.1 Genbank CDS 7375 7518 . + 0 ID=cds10;Dbxref=SEED:fig|6666666.177679.peg.54,NCBI_GP:AXC42394.1;Name=AXC42394.1;Note=label: orf11;gbkey=CDS;product=hypothetical protein;protein_id=AXC42394.1;transl_table=11 MH370385.1 Genbank CDS 7603 8304 . + 0 ID=cds11;Dbxref=SEED:fig|6666666.177679.peg.55,NCBI_GP:AXC42395.1;Name=AXC42395.1;Note=label: orf12;gbkey=CDS;product=putative scaffold protein;protein_id=AXC42395.1;transl_table=11 MH370385.1 Genbank CDS 8308 9357 . + 0 ID=cds12;Dbxref=SEED:fig|6666666.177679.peg.56,NCBI_GP:AXC42396.1;Name=AXC42396.1;Note=label: orf13%3B putative major coat (phage capsid) protein;gbkey=CDS;product=putative major coat protein;protein_id=AXC42396.1;transl_table=11 MH370385.1 Genbank CDS 9418 9789 . + 0 ID=cds13;Dbxref=SEED:fig|6666666.177679.peg.57,NCBI_GP:AXC42397.1;Name=AXC42397.1;Note=label: orf14;gbkey=CDS;product=putative head fiber protein;protein_id=AXC42397.1;transl_table=11 MH370385.1 Genbank CDS 9801 10151 . + 0 ID=cds14;Dbxref=SEED:fig|6666666.177679.peg.58,NCBI_GP:AXC42398.1;Name=AXC42398.1;Note=label: orf15;gbkey=CDS;product=putative Hoc protein;protein_id=AXC42398.1;transl_table=11 MH370385.1 Genbank CDS 10188 10376 . + 0 ID=cds15;Dbxref=SEED:fig|6666666.177679.peg.59,NCBI_GP:AXC42399.1;Name=AXC42399.1;Note=label: orf16;gbkey=CDS;product=hypothetical protein;protein_id=AXC42399.1;transl_table=11 MH370385.1 Genbank CDS 10380 10889 . + 0 ID=cds16;Dbxref=SEED:fig|6666666.177679.peg.60,NCBI_GP:AXC42400.1;Name=AXC42400.1;Note=label: orf17;gbkey=CDS;product=putative head-tail joining protein;protein_id=AXC42400.1;transl_table=11 MH370385.1 Genbank CDS 10892 11497 . + 0 ID=cds17;Dbxref=SEED:fig|6666666.177679.peg.61,NCBI_GP:AXC42401.1;Name=AXC42401.1;Note=label: orf18;gbkey=CDS;product=hypothetical protein;protein_id=AXC42401.1;transl_table=11 MH370385.1 Genbank CDS 11497 11856 . + 0 ID=cds18;Dbxref=SEED:fig|6666666.177679.peg.62,NCBI_GP:AXC42402.1;Name=AXC42402.1;Note=label: orf19;gbkey=CDS;product=putative head-tail joining protein;protein_id=AXC42402.1;transl_table=11 MH370385.1 Genbank CDS 11853 12248 . + 0 ID=cds19;Dbxref=SEED:fig|6666666.177679.peg.63,NCBI_GP:AXC42403.1;Name=AXC42403.1;Note=label: orf20;gbkey=CDS;product=putative structural protein;protein_id=AXC42403.1;transl_table=11 MH370385.1 Genbank CDS 12248 12667 . + 0 ID=cds20;Dbxref=SEED:fig|6666666.177679.peg.64,NCBI_GP:AXC42404.1;Name=AXC42404.1;Note=label: orf21;gbkey=CDS;product=putative structural protein;protein_id=AXC42404.1;transl_table=11 MH370385.1 Genbank CDS 12667 13836 . + 0 ID=cds21;Dbxref=SEED:fig|6666666.177679.peg.65,NCBI_GP:AXC42405.1;Name=AXC42405.1;Note=label: orf22;gbkey=CDS;product=putative major tail protein;protein_id=AXC42405.1;transl_table=11 MH370385.1 Genbank CDS 13865 14536 . - 0 ID=cds22;Dbxref=SEED:fig|6666666.177679.peg.66,NCBI_GP:AXC42406.1;Name=AXC42406.1;Note=label: orf23;gbkey=CDS;product=putative DNA-binding protein;protein_id=AXC42406.1;transl_table=11 MH370385.1 Genbank CDS 14650 14880 . - 0 ID=cds23;Dbxref=SEED:fig|6666666.177679.peg.1,NCBI_GP:AXC42407.1;Name=AXC42407.1;Note=label: orf24;gbkey=CDS;product=hypothetical protein;protein_id=AXC42407.1;transl_table=11 MH370385.1 Genbank CDS 14894 15364 . - 0 ID=cds24;Dbxref=SEED:fig|6666666.177679.peg.2,NCBI_GP:AXC42408.1;Name=AXC42408.1;Note=HNH nuclease (IPR003615)%3B DNA-binding domain (IPR016177)%3B similar to SPO1 HNH homing nuclease (PDB:1U3E)%3B label: orf25;gbkey=CDS;product=putative HNH homing endonuclease;protein_id=AXC42408.1;transl_table=11 MH370385.1 Genbank CDS 15361 16491 . - 0 ID=cds25;Dbxref=SEED:fig|6666666.177679.peg.3,NCBI_GP:AXC42409.1;Name=AXC42409.1;Note='Similarity to Lambda phosphatase (PDB:1G5B)%3B Metallo-dependent phosphatase-like domain (IPR029052)'%3B label: orf26;gbkey=CDS;product=putative serine/threonine protein phosphatase;protein_id=AXC42409.1;transl_table=11 MH370385.1 Genbank CDS 16554 16733 . - 0 ID=cds26;Dbxref=SEED:fig|6666666.177679.peg.4,NCBI_GP:AXC42410.1;Name=AXC42410.1;Note='Imm_superinfect (pfam14373)%3B bacteriophage-associated immunity protein (IPR016410)'%3B label: orf27;gbkey=CDS;product=putative superinfection immunity protein;protein_id=AXC42410.1;transl_table=11 MH370385.1 Genbank CDS 16903 17319 . + 0 ID=cds27;Dbxref=SEED:fig|6666666.177679.peg.5,NCBI_GP:AXC42411.1;Name=AXC42411.1;Note=label: orf28;gbkey=CDS;product=hypothetical protein;protein_id=AXC42411.1;transl_table=11 MH370385.1 Genbank CDS 17325 17684 . + 0 ID=cds28;Dbxref=SEED:fig|6666666.177679.peg.6,NCBI_GP:AXC42412.1;Name=AXC42412.1;Note=label: orf29;gbkey=CDS;product=hypothetical protein;protein_id=AXC42412.1;transl_table=11 MH370385.1 Genbank CDS 17677 20010 . + 0 ID=cds29;Dbxref=SEED:fig|6666666.177679.peg.7,NCBI_GP:AXC42413.1;Name=AXC42413.1;Note=label: orf30;gbkey=CDS;product=tail length tape-measure protein;protein_id=AXC42413.1;transl_table=11 MH370385.1 Genbank CDS 20012 20512 . + 0 ID=cds30;Dbxref=SEED:fig|6666666.177679.peg.8,NCBI_GP:AXC42414.1;Name=AXC42414.1;Note=label: orf31;gbkey=CDS;product=hypothetical protein;protein_id=AXC42414.1;transl_table=11 MH370385.1 Genbank CDS 20509 21024 . + 0 ID=cds31;Dbxref=SEED:fig|6666666.177679.peg.9,NCBI_GP:AXC42415.1;Name=AXC42415.1;Note=label: orf32;gbkey=CDS;product=hypothetical protein;protein_id=AXC42415.1;transl_table=11 MH370385.1 Genbank CDS 21021 21386 . + 0 ID=cds32;Dbxref=SEED:fig|6666666.177679.peg.10,NCBI_GP:AXC42416.1;Name=AXC42416.1;Note=label: orf33;gbkey=CDS;product=hypothetical protein;protein_id=AXC42416.1;transl_table=11 MH370385.1 Genbank CDS 21377 23935 . + 0 ID=cds33;Dbxref=SEED:fig|6666666.177679.peg.11,NCBI_GP:AXC42417.1;Name=AXC42417.1;Note='Best predicted model hit: MuSo2 43kDa tail protein (3cdd)%3B Mu baseplate component gp44 (c1wruA)~phage-related tail component (COG4733)%3B label: orf34;gbkey=CDS;product=putative tail-associated protein;protein_id=AXC42417.1;transl_table=11 MH370385.1 Genbank CDS 23948 25978 . + 0 ID=cds34;Dbxref=SEED:fig|6666666.177679.peg.12,NCBI_GP:AXC42418.1;Name=AXC42418.1;Note=label: orf35;gbkey=CDS;product=putative tailspike protein;protein_id=AXC42418.1;transl_table=11 MH370385.1 Genbank sequence_alteration 25326 25326 . + . ID=id1;Note=label: SNP with regards to S104 (cov.1758);gbkey=variation MH370385.1 Genbank CDS 26102 26275 . - 0 ID=cds35;Dbxref=SEED:fig|6666666.177679.peg.13,NCBI_GP:AXC42419.1;Name=AXC42419.1;Note=label: orf36;gbkey=CDS;product=non-conserved hypothetical protein;protein_id=AXC42419.1;transl_table=11 MH370385.1 Genbank CDS 26275 26766 . - 0 ID=cds36;Dbxref=SEED:fig|6666666.177679.peg.14,NCBI_GP:AXC42420.1;Name=AXC42420.1;Note='high similarity to SPO1 HNH homing endonuclease (PDB:1U3E)%3B HNH nuclease (IPR003615) and DNA-binding (IPR016177) domains'%3B label: orf37;gbkey=CDS;product=putative HNH homing endonuclease;protein_id=AXC42420.1;transl_table=11 MH370385.1 Genbank CDS 26763 28187 . - 0 ID=cds37;Dbxref=SEED:fig|6666666.177679.peg.15,NCBI_GP:AXC42421.1;Name=AXC42421.1;Note=P-loop containing nucleoside triphosphate hydrolase (IPR027417)%2C helicase superfamily 1/2 ATP-binding (IPR014001) domains%3B label: orf38;gbkey=CDS;product=putative DNA helicase;protein_id=AXC42421.1;transl_table=11 MH370385.1 Genbank CDS 28184 28375 . - 0 ID=cds38;Dbxref=SEED:fig|6666666.177679.peg.16,NCBI_GP:AXC42422.1;Name=AXC42422.1;Note=label: orf39;gbkey=CDS;product=hypothetical protein;protein_id=AXC42422.1;transl_table=11 MH370385.1 Genbank CDS 28407 28706 . - 0 ID=cds39;Dbxref=SEED:fig|6666666.177679.peg.17,NCBI_GP:AXC42423.1;Name=AXC42423.1;Note=VRR-NUC domain (IPR014883)%2C similar to nuclease from SETP3 (PDB:4QBN)%3B label: orf40;gbkey=CDS;product=putative nuclease;protein_id=AXC42423.1;transl_table=11 MH370385.1 Genbank CDS 28688 28840 . - 0 ID=cds40;Dbxref=NCBI_GP:AXC42424.1;Name=AXC42424.1;Note=label: orf41;gbkey=CDS;product=hypothetical protein;protein_id=AXC42424.1;transl_table=11 MH370385.1 Genbank CDS 28923 29054 . - 0 ID=cds41;Dbxref=SEED:fig|6666666.177679.peg.18,NCBI_GP:AXC42425.1;Name=AXC42425.1;Note=label: orf42;gbkey=CDS;product=hypothetical protein;protein_id=AXC42425.1;transl_table=11 MH370385.1 Genbank CDS 29044 31245 . - 0 ID=cds42;Dbxref=SEED:fig|6666666.177679.peg.19,NCBI_GP:AXC42426.1;Name=AXC42426.1;Note=intein harbouring protein%3B similar to wksl3_DNA polymerase%2C Jersey_gp42%3B label: orf43;gbkey=CDS;product=putative DNA polymerase;protein_id=AXC42426.1;transl_table=11 MH370385.1 Genbank CDS 31303 31929 . - 0 ID=cds43;Dbxref=SEED:fig|6666666.177679.peg.20,NCBI_GP:AXC42427.1;Name=AXC42427.1;Note=label: orf44;gbkey=CDS;product=putative ssDNA-binding protein;protein_id=AXC42427.1;transl_table=11 MH370385.1 Genbank CDS 32011 32187 . - 0 ID=cds44;Dbxref=SEED:fig|6666666.177679.peg.21,NCBI_GP:AXC42428.1;Name=AXC42428.1;Note=label: orf45;gbkey=CDS;product=hypothetical protein;protein_id=AXC42428.1;transl_table=11 MH370385.1 Genbank CDS 32187 33611 . - 0 ID=cds45;Dbxref=SEED:fig|6666666.177679.peg.22,NCBI_GP:AXC42429.1;Name=AXC42429.1;Note=belongs to family DUF2800 (IPR021229)%3B label: orf46;gbkey=CDS;product=hypothetical protein;protein_id=AXC42429.1;transl_table=11 MH370385.1 Genbank CDS 33608 33955 . - 0 ID=cds46;Dbxref=SEED:fig|6666666.177679.peg.23,NCBI_GP:AXC42430.1;Name=AXC42430.1;Note=label: orf47;gbkey=CDS;product=hypothetical protein;protein_id=AXC42430.1;transl_table=11 MH370385.1 Genbank CDS 33952 34224 . - 0 ID=cds47;Dbxref=SEED:fig|6666666.177679.peg.24,NCBI_GP:AXC42431.1;Name=AXC42431.1;Note=label: orf48;gbkey=CDS;product=hypothetical protein;protein_id=AXC42431.1;transl_table=11 MH370385.1 Genbank CDS 34221 34610 . - 0 ID=cds48;Dbxref=SEED:fig|6666666.177679.peg.25,NCBI_GP:AXC42432.1;Name=AXC42432.1;Note=similarity to PDB:4QYB%3B belongs to NinX family (IPR019701)%3B label: orf49;gbkey=CDS;product=NinX-like protein;protein_id=AXC42432.1;transl_table=11 MH370385.1 Genbank CDS 34654 35190 . - 0 ID=cds49;Dbxref=SEED:fig|6666666.177679.peg.26,NCBI_GP:AXC42433.1;Name=AXC42433.1;Note=label: orf50;gbkey=CDS;product=hypothetical protein;protein_id=AXC42433.1;transl_table=11 MH370385.1 Genbank CDS 35324 35542 . + 0 ID=cds50;Dbxref=SEED:fig|6666666.177679.peg.27,NCBI_GP:AXC42434.1;Name=AXC42434.1;Note=label: orf51;gbkey=CDS;product=putative DNA-binding protein;protein_id=AXC42434.1;transl_table=11 MH370385.1 Genbank CDS 35555 37741 . - 0 ID=cds51;Dbxref=SEED:fig|6666666.177679.peg.28,NCBI_GP:AXC42435.1;Name=AXC42435.1;Note=label: orf52;gbkey=CDS;product=putative replicative helicase-primase;protein_id=AXC42435.1;transl_table=11 MH370385.1 Genbank CDS 37798 38031 . - 0 ID=cds52;Dbxref=SEED:fig|6666666.177679.peg.29,NCBI_GP:AXC42436.1;Name=AXC42436.1;Note=label: orf53;gbkey=CDS;product=putative uvsX-like protein;protein_id=AXC42436.1;transl_table=11 MH370385.1 Genbank CDS 38028 38198 . - 0 ID=cds53;Dbxref=SEED:fig|6666666.177679.peg.30,NCBI_GP:AXC42437.1;Name=AXC42437.1;Note=label: orf54;gbkey=CDS;product=putative DNA-binding protein;protein_id=AXC42437.1;transl_table=11 MH370385.1 Genbank CDS 38790 39077 . + 0 ID=cds54;Dbxref=SEED:fig|6666666.177679.peg.31,NCBI_GP:AXC42438.1;Name=AXC42438.1;Note=label: orf55;gbkey=CDS;product=non-conserved hypothetical protein;protein_id=AXC42438.1;transl_table=11 MH370385.1 Genbank CDS 39198 39479 . + 0 ID=cds55;Dbxref=SEED:fig|6666666.177679.peg.32,NCBI_GP:AXC42439.1;Name=AXC42439.1;Note=label: orf56;gbkey=CDS;product=hypothetical protein;protein_id=AXC42439.1;transl_table=11 MH370385.1 Genbank CDS 39476 39679 . + 0 ID=cds56;Dbxref=SEED:fig|6666666.177679.peg.33,NCBI_GP:AXC42440.1;Name=AXC42440.1;Note=label: orf57;gbkey=CDS;product=hypothetical protein;protein_id=AXC42440.1;transl_table=11 MH370385.1 Genbank CDS 39682 40053 . + 0 ID=cds57;Dbxref=SEED:fig|6666666.177679.peg.34,NCBI_GP:AXC42441.1;Name=AXC42441.1;Note=label: orf58;gbkey=CDS;product=hypothetical protein;protein_id=AXC42441.1;transl_table=11 MH370385.1 Genbank CDS 40132 40413 . + 0 ID=cds58;Dbxref=SEED:fig|6666666.177679.peg.35,NCBI_GP:AXC42442.1;Name=AXC42442.1;Note=label: orf59;gbkey=CDS;product=hypothetical protein;protein_id=AXC42442.1;transl_table=11 MH370385.1 Genbank CDS 40415 40705 . + 0 ID=cds59;Dbxref=SEED:fig|6666666.177679.peg.36,NCBI_GP:AXC42443.1;Name=AXC42443.1;Note=label: orf60;gbkey=CDS;product=putative holin;protein_id=AXC42443.1;transl_table=11 MH370385.1 Genbank CDS 40683 41201 . + 0 ID=cds60;Dbxref=SEED:fig|6666666.177679.peg.37,NCBI_GP:AXC42444.1;Name=AXC42444.1;Note=HNH nuclease (IPR003615)%3B similar to SPO1 HNH homing nuclease (PDB:1U3E)%3B label: orf61;gbkey=CDS;product=putative HNH homing endonuclease;protein_id=AXC42444.1;transl_table=11 MH370385.1 Genbank CDS 41189 41671 . + 0 ID=cds61;Dbxref=SEED:fig|6666666.177679.peg.38,NCBI_GP:AXC42445.1;Name=AXC42445.1;Note=similar to endolysins from other Jersevirinae members%3B label: orf62;gbkey=CDS;product=putative endolysin;protein_id=AXC42445.1;transl_table=11 MH370385.1 Genbank CDS 41855 42004 . + 0 ID=cds62;Dbxref=SEED:fig|6666666.177679.peg.39,NCBI_GP:AXC42446.1;Name=AXC42446.1;Note=label: orf63;gbkey=CDS;product=hypothetical protein;protein_id=AXC42446.1;transl_table=11 MH370385.1 Genbank CDS 42001 42156 . + 0 ID=cds63;Dbxref=SEED:fig|6666666.177679.peg.40,NCBI_GP:AXC42447.1;Name=AXC42447.1;Note=label: orf64;gbkey=CDS;product=hypothetical protein;protein_id=AXC42447.1;transl_table=11 MH370385.1 Genbank CDS 42153 42506 . + 0 ID=cds64;Dbxref=SEED:fig|6666666.177679.peg.41,NCBI_GP:AXC42448.1;Name=AXC42448.1;Note=label: orf65;gbkey=CDS;product=hypothetical protein;protein_id=AXC42448.1;transl_table=11 MH370385.1 Genbank CDS 42506 42805 . + 0 ID=cds65;Dbxref=SEED:fig|6666666.177679.peg.42,NCBI_GP:AXC42449.1;Name=AXC42449.1;Note=label: orf66;gbkey=CDS;product=hypothetical protein;protein_id=AXC42449.1;transl_table=11 MH370385.1 Genbank CDS 42822 43052 . + 0 ID=cds66;Dbxref=SEED:fig|6666666.177679.peg.43,NCBI_GP:AXC42450.1;Name=AXC42450.1;Note=label: orf67;gbkey=CDS;product=hypothetical protein;protein_id=AXC42450.1;transl_table=11 ###