##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM334233v1 #!genome-build-accession NCBI_Assembly:GCA_003342335.1 ##sequence-region MH370387.1 1 41391 ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2267250 MH370387.1 Genbank region 1 41391 . + . ID=id0;Dbxref=taxon:2267250;Is_circular=true;collection-date=2015;country=Denmark: Copenhagen;gbkey=Src;genome=genomic;mol_type=genomic DNA;nat-host=Salmonella enterica serotype Typhimurium LT2 MH370387.1 Genbank CDS 17 1474 . - 0 ID=cds0;Dbxref=SEED:fig|6666666.217928.peg.57,NCBI_GP:AXC42612.1;Name=AXC42612.1;Note=O-antigen conversion%3B label: orf1;gbkey=CDS;product=translocase;protein_id=AXC42612.1;transl_table=11 MH370387.1 Genbank CDS 1464 2396 . - 0 ID=cds1;Dbxref=SEED:fig|6666666.217928.peg.56,NCBI_GP:AXC42613.1;Name=AXC42613.1;Note=O-antigen conversion%3B similar to bacteriophage P22 gtrB%3B label: orf2;gbkey=CDS;product=bactoprenol glycosyl transferase;protein_id=AXC42613.1;transl_table=11 MH370387.1 Genbank CDS 2393 2755 . - 0 ID=cds2;Dbxref=NCBI_GP:AXC42614.1;Name=AXC42614.1;Note=O-antigen conversion%3B similar to bacteriophage P22 gtrA%3B label: orf3;gbkey=CDS;product=translocase;protein_id=AXC42614.1;transl_table=11 MH370387.1 Genbank CDS 3104 4267 . - 0 ID=cds3;Dbxref=SEED:fig|6666666.217928.peg.54,NCBI_GP:AXC42615.1;Name=AXC42615.1;Note=similar to bacteriophage P22 int'%3B label: orf4;gbkey=CDS;product=integrase;protein_id=AXC42615.1;transl_table=11 MH370387.1 Genbank CDS 4144 4494 . - 0 ID=cds4;Dbxref=NCBI_GP:AXC42616.1;Name=AXC42616.1;Note=similar to bacteriophage P22 xis%3B label: orf5;gbkey=CDS;product=excisionase;protein_id=AXC42616.1;transl_table=11 MH370387.1 Genbank CDS 4497 4634 . - 0 ID=cds5;Dbxref=GO:0008863,SEED:fig|6666666.217928.peg.53,NCBI_GP:AXC42617.1;Name=AXC42617.1;Note=selenocysteine-containing protein%3B label: orf6;gbkey=CDS;product=formate dehydrogenase N alpha subunit;protein_id=AXC42617.1;transl_table=11 MH370387.1 Genbank CDS 4706 4990 . - 0 ID=cds6;Dbxref=SEED:fig|6666666.217928.peg.52,NCBI_GP:AXC42618.1;Name=AXC42618.1;Note=label: orf7;gbkey=CDS;product=hypothetical protein;protein_id=AXC42618.1;transl_table=11 MH370387.1 Genbank CDS 4983 5267 . - 0 ID=cds7;Dbxref=SEED:fig|6666666.217928.peg.51,NCBI_GP:AXC42619.1;Name=AXC42619.1;Note=label: orf8;gbkey=CDS;product=hypothetical protein;protein_id=AXC42619.1;transl_table=11 MH370387.1 Genbank CDS 5267 5911 . - 0 ID=cds8;Dbxref=SEED:fig|6666666.217928.peg.50,NCBI_GP:AXC42620.1;Name=AXC42620.1;Note=label: orf9;gbkey=CDS;product=hypothetical protein;protein_id=AXC42620.1;transl_table=11 MH370387.1 Genbank CDS 5898 6131 . - 0 ID=cds9;Dbxref=SEED:fig|6666666.217928.peg.49,NCBI_GP:AXC42621.1;Name=AXC42621.1;Note=label: orf10;gbkey=CDS;product=hypothetical protein;protein_id=AXC42621.1;transl_table=11 MH370387.1 Genbank CDS 6128 6637 . - 0 ID=cds10;Dbxref=SEED:fig|6666666.217928.peg.48,NCBI_GP:AXC42622.1;Name=AXC42622.1;Note=label: orf11;gbkey=CDS;product=eae protein;protein_id=AXC42622.1;transl_table=11 MH370387.1 Genbank CDS 6634 6804 . - 0 ID=cds11;Dbxref=SEED:fig|6666666.217928.peg.47,NCBI_GP:AXC42623.1;Name=AXC42623.1;Note=label: orf12;gbkey=CDS;product=hypothetical protein;protein_id=AXC42623.1;transl_table=11 MH370387.1 Genbank CDS 6815 7108 . - 0 ID=cds12;Dbxref=SEED:fig|6666666.217928.peg.46,NCBI_GP:AXC42624.1;Name=AXC42624.1;Note=similar to bacteriophage P22 abc2%3B label: orf13;gbkey=CDS;product=anti-RecBCD;protein_id=AXC42624.1;transl_table=11 MH370387.1 Genbank CDS 7155 7439 . - 0 ID=cds13;Dbxref=SEED:fig|6666666.217928.peg.45,NCBI_GP:AXC42625.1;Name=AXC42625.1;Note=similar to bacteriophage P22 abc1%3B label: orf14;gbkey=CDS;product=anti-RecBCD;protein_id=AXC42625.1;transl_table=11 MH370387.1 Genbank CDS 7439 8146 . - 0 ID=cds14;Dbxref=SEED:fig|6666666.217928.peg.44,NCBI_GP:AXC42626.1;Name=AXC42626.1;Note=label: orf15;gbkey=CDS;product=putative DNA-binding protein Erf;protein_id=AXC42626.1;transl_table=11 MH370387.1 Genbank CDS 8143 8286 . - 0 ID=cds15;Dbxref=SEED:fig|6666666.217928.peg.43,NCBI_GP:AXC42627.1;Name=AXC42627.1;Note=label: orf16;gbkey=CDS;product=DNA recombinase;protein_id=AXC42627.1;transl_table=11 MH370387.1 Genbank CDS 8276 8464 . - 0 ID=cds16;Dbxref=SEED:fig|6666666.217928.peg.42,NCBI_GP:AXC42628.1;Name=AXC42628.1;Note=similar to bacteriophage P22 kil%3B label: orf17;gbkey=CDS;product=putative kil protein;protein_id=AXC42628.1;transl_table=11 MH370387.1 Genbank CDS 8445 8603 . - 0 ID=cds17;Dbxref=SEED:fig|6666666.217928.peg.41,NCBI_GP:AXC42629.1;Name=AXC42629.1;Note=similar to bacteriophage P22 C3%3B label: orf18;gbkey=CDS;product=putative regulatory C3 protein;protein_id=AXC42629.1;transl_table=11 MH370387.1 Genbank CDS 8688 9002 . - 0 ID=cds18;Dbxref=SEED:fig|6666666.217928.peg.40,NCBI_GP:AXC42630.1;Name=AXC42630.1;Note=similar to Gp17%3B label: orf19;gbkey=CDS;product=superinfection exclusion protein;protein_id=AXC42630.1;transl_table=11 MH370387.1 Genbank CDS 9153 9278 . - 0 ID=cds19;Dbxref=SEED:fig|6666666.217928.peg.39,NCBI_GP:AXC42631.1;Name=AXC42631.1;Note=label: orf20;gbkey=CDS;product=hypothetical protein;protein_id=AXC42631.1;transl_table=11 MH370387.1 Genbank CDS 9278 9565 . - 0 ID=cds20;Dbxref=SEED:fig|6666666.217928.peg.38,NCBI_GP:AXC42632.1;Name=AXC42632.1;Note=label: orf21;gbkey=CDS;product=hypothetical protein;protein_id=AXC42632.1;transl_table=11 MH370387.1 Genbank CDS 9599 10243 . - 0 ID=cds21;Dbxref=SEED:fig|6666666.217928.peg.37,NCBI_GP:AXC42633.1;Name=AXC42633.1;Note=label: orf22;gbkey=CDS;product=pentapeptide repeat family protein;protein_id=AXC42633.1;transl_table=11 MH370387.1 Genbank CDS 10327 10521 . - 0 ID=cds22;Dbxref=SEED:fig|6666666.217928.peg.36,NCBI_GP:AXC42634.1;Name=AXC42634.1;Note=similar to bacteriophage P22 ral%3B label: orf23;gbkey=CDS;product=putative antirestriction ral protein;protein_id=AXC42634.1;transl_table=11 MH370387.1 Genbank CDS 10735 11322 . + 0 ID=cds23;Dbxref=SEED:fig|6666666.217928.peg.35,NCBI_GP:AXC42635.1;Name=AXC42635.1;Note=similar to bacteriophage P22 sieB%3B label: orf24;gbkey=CDS;product=superinfection exclusion protein;protein_id=AXC42635.1;transl_table=11 MH370387.1 Genbank CDS 11335 11637 . - 0 ID=cds24;Dbxref=SEED:fig|6666666.217928.peg.34,NCBI_GP:AXC42636.1;Name=AXC42636.1;Note=similar to bacteriophage P22 Gp24%3B label: orf25;gbkey=CDS;product=antitermination protein;protein_id=AXC42636.1;transl_table=11 MH370387.1 Genbank CDS 12001 12204 . + 0 ID=cds25;Dbxref=SEED:fig|6666666.217928.peg.33,NCBI_GP:AXC42637.1;Name=AXC42637.1;Note=label: orf26;gbkey=CDS;product=hypothetical protein;protein_id=AXC42637.1;transl_table=11 MH370387.1 Genbank CDS 12243 13322 . - 0 ID=cds26;Dbxref=SEED:fig|6666666.217928.peg.32,NCBI_GP:AXC42638.1;Name=AXC42638.1;Note=label: orf27;gbkey=CDS;product=hypothetical protein;protein_id=AXC42638.1;transl_table=11 MH370387.1 Genbank CDS 13487 14176 . - 0 ID=cds27;Dbxref=SEED:fig|6666666.217928.peg.31,NCBI_GP:AXC42639.1;Name=AXC42639.1;Note=similar to Enterobacteria phage HK022 cI%3B label: orf28;gbkey=CDS;product=putative repressor cI protein;protein_id=AXC42639.1;transl_table=11 MH370387.1 Genbank CDS 14287 14502 . + 0 ID=cds28;Dbxref=SEED:fig|6666666.217928.peg.30,NCBI_GP:AXC42640.1;Name=AXC42640.1;Note=similar to Enterobacteria phage HK022 cro%3B label: orf29;gbkey=CDS;product=putative antirepressor cro protein;protein_id=AXC42640.1;transl_table=11 MH370387.1 Genbank CDS 14613 14894 . + 0 ID=cds29;Dbxref=SEED:fig|6666666.217928.peg.29,NCBI_GP:AXC42641.1;Name=AXC42641.1;Note=label: orf30;gbkey=CDS;product=cII;protein_id=AXC42641.1;transl_table=11 MH370387.1 Genbank CDS 14929 15090 . + 0 ID=cds30;Dbxref=SEED:fig|6666666.217928.peg.28,NCBI_GP:AXC42642.1;Name=AXC42642.1;Note=label: orf31;gbkey=CDS;product=hypothetical protein;protein_id=AXC42642.1;transl_table=11 MH370387.1 Genbank CDS 15077 15898 . + 0 ID=cds31;Dbxref=SEED:fig|6666666.217928.peg.27,NCBI_GP:AXC42643.1;Name=AXC42643.1;Note=similar to bacteriophage P22 18%3B label: orf32;gbkey=CDS;product=putative replication protein 18;protein_id=AXC42643.1;transl_table=11 MH370387.1 Genbank CDS 15895 17271 . + 0 ID=cds32;Dbxref=SEED:fig|6666666.217928.peg.26,NCBI_GP:AXC42644.1;Name=AXC42644.1;Note=label: orf33;gbkey=CDS;product=replicative DNA helicase;protein_id=AXC42644.1;transl_table=11 MH370387.1 Genbank CDS 17268 17537 . + 0 ID=cds33;Dbxref=SEED:fig|6666666.217928.peg.25,NCBI_GP:AXC42645.1;Name=AXC42645.1;Note=similar to P22_ORF30%3B label: orf34;gbkey=CDS;product=hypothetical protein;protein_id=AXC42645.1;transl_table=11 MH370387.1 Genbank CDS 17611 18048 . + 0 ID=cds34;Dbxref=SEED:fig|6666666.217928.peg.24,NCBI_GP:AXC42646.1;Name=AXC42646.1;Note=similar to P22 NinB DNA recombination protein%3B label: orf35;gbkey=CDS;product=NinB-like protein;protein_id=AXC42646.1;transl_table=11 MH370387.1 Genbank CDS 18045 18218 . + 0 ID=cds35;Dbxref=NCBI_GP:AXC42647.1;Name=AXC42647.1;Note=similar to P22 NinD%3B label: orf36;gbkey=CDS;product=NinD-like protein;protein_id=AXC42647.1;transl_table=11 MH370387.1 Genbank CDS 18185 18361 . + 0 ID=cds36;Dbxref=SEED:fig|6666666.217928.peg.23,NCBI_GP:AXC42648.1;Name=AXC42648.1;Note=similar to P22 NinE%3B label: orf37;gbkey=CDS;product=NinE;protein_id=AXC42648.1;transl_table=11 MH370387.1 Genbank CDS 18364 18705 . + 0 ID=cds37;Dbxref=SEED:fig|6666666.217928.peg.22,NCBI_GP:AXC42649.1;Name=AXC42649.1;Note=similar to P22 NinX%3B label: orf38;gbkey=CDS;product=NinX;protein_id=AXC42649.1;transl_table=11 MH370387.1 Genbank CDS 18698 18874 . + 0 ID=cds38;Dbxref=SEED:fig|6666666.217928.peg.21,NCBI_GP:AXC42650.1;Name=AXC42650.1;Note=similar to P22 NinF%3B label: orf39;gbkey=CDS;product=NinF;protein_id=AXC42650.1;transl_table=11 MH370387.1 Genbank CDS 18867 19478 . + 0 ID=cds39;Dbxref=SEED:fig|6666666.217928.peg.20,NCBI_GP:AXC42651.1;Name=AXC42651.1;Note=similar to P22 NinG%3B label: orf40%3B NinG rap recombination protein;gbkey=CDS;product=rap recombination protein;protein_id=AXC42651.1;transl_table=11 MH370387.1 Genbank CDS 19475 19699 . + 0 ID=cds40;Dbxref=SEED:fig|6666666.217928.peg.19,NCBI_GP:AXC42652.1;Name=AXC42652.1;Note=similar to P22 NinY%3B label: orf41;gbkey=CDS;product=NinY;protein_id=AXC42652.1;transl_table=11 MH370387.1 Genbank CDS 19696 19899 . + 0 ID=cds41;Dbxref=SEED:fig|6666666.217928.peg.18,NCBI_GP:AXC42653.1;Name=AXC42653.1;Note=similar to P22 NinH%3B label: orf42;gbkey=CDS;product=NinH;protein_id=AXC42653.1;transl_table=11 MH370387.1 Genbank CDS 19880 20059 . + 0 ID=cds42;Dbxref=SEED:fig|6666666.217928.peg.17,NCBI_GP:AXC42654.1;Name=AXC42654.1;Note=similar to P22 NinZ%3B label: orf43;gbkey=CDS;product=NinZ;protein_id=AXC42654.1;transl_table=11 MH370387.1 Genbank CDS 20056 20829 . + 0 ID=cds43;Dbxref=SEED:fig|6666666.217928.peg.16,NCBI_GP:AXC42655.1;Name=AXC42655.1;Note=similar to P22 Q%3B label: orf44;gbkey=CDS;product=putative antitermination protein Q;protein_id=AXC42655.1;transl_table=11 MH370387.1 Genbank CDS 21260 21463 . + 0 ID=cds44;Dbxref=SEED:fig|6666666.217928.peg.15,NCBI_GP:AXC42656.1;Name=AXC42656.1;Note=label: orf45;gbkey=CDS;product=classII holin;protein_id=AXC42656.1;transl_table=11 MH370387.1 Genbank CDS 21468 21938 . + 0 ID=cds45;Dbxref=SEED:fig|6666666.217928.peg.14,NCBI_GP:AXC42657.1;Name=AXC42657.1;Note=label: orf46;gbkey=CDS;product=lysozyme;protein_id=AXC42657.1;transl_table=11 MH370387.1 Genbank CDS 21935 22402 . + 0 ID=cds46;Dbxref=SEED:fig|6666666.217928.peg.13,NCBI_GP:AXC42658.1;Name=AXC42658.1;Note=similar to endopeptidase%3B label: orf47;gbkey=CDS;product=outer membrane lytic protein Rz;protein_id=AXC42658.1;transl_table=11 MH370387.1 Genbank CDS 22615 23145 . + 0 ID=cds47;Dbxref=SEED:fig|6666666.217928.peg.12,NCBI_GP:AXC42659.1;Name=AXC42659.1;Note=label: orf48;gbkey=CDS;product=hypothetical protein;protein_id=AXC42659.1;transl_table=11 MH370387.1 Genbank CDS 23254 23610 . + 0 ID=cds48;Dbxref=SEED:fig|6666666.217928.peg.11,NCBI_GP:AXC42660.1;Name=AXC42660.1;Note=label: orf49;gbkey=CDS;product=hypothetical protein;protein_id=AXC42660.1;transl_table=11 MH370387.1 Genbank CDS 23614 24003 . + 0 ID=cds49;Dbxref=SEED:fig|6666666.217928.peg.10,NCBI_GP:AXC42661.1;Name=AXC42661.1;Note=label: orf50;gbkey=CDS;product=hypothetical protein;protein_id=AXC42661.1;transl_table=11 MH370387.1 Genbank CDS 24003 24407 . + 0 ID=cds50;Dbxref=SEED:fig|6666666.217928.peg.9,NCBI_GP:AXC42662.1;Name=AXC42662.1;Note=label: orf51;gbkey=CDS;product=tail fibers protein;protein_id=AXC42662.1;transl_table=11 MH370387.1 Genbank CDS 24411 24899 . + 0 ID=cds51;Dbxref=SEED:fig|6666666.217928.peg.8,NCBI_GP:AXC42663.1;Name=AXC42663.1;Note=similar to bacteriophage P22 gp3%3B label: orf52;gbkey=CDS;product=terminase small subunit;protein_id=AXC42663.1;transl_table=11 MH370387.1 Genbank CDS 24877 26376 . + 0 ID=cds52;Dbxref=SEED:fig|6666666.217928.peg.7,NCBI_GP:AXC42664.1;Name=AXC42664.1;Note=similar to bacteriophage P22 gp2%3B label: orf53;gbkey=CDS;product=terminase large subunit;protein_id=AXC42664.1;transl_table=11 MH370387.1 Genbank CDS 26376 28553 . + 0 ID=cds53;Dbxref=SEED:fig|6666666.217928.peg.6,NCBI_GP:AXC42665.1;Name=AXC42665.1;Note=label: orf54;gbkey=CDS;product=portal protein;protein_id=AXC42665.1;transl_table=11 MH370387.1 Genbank CDS 28567 29478 . + 0 ID=cds54;Dbxref=SEED:fig|6666666.217928.peg.5,NCBI_GP:AXC42666.1;Name=AXC42666.1;Note=label: orf55;gbkey=CDS;product=capsid and scaffold protein;protein_id=AXC42666.1;transl_table=11 MH370387.1 Genbank CDS 29478 30770 . + 0 ID=cds55;Dbxref=SEED:fig|6666666.217928.peg.4,NCBI_GP:AXC42667.1;Name=AXC42667.1;Note=label: orf56;gbkey=CDS;product=capsid protein;protein_id=AXC42667.1;transl_table=11 MH370387.1 Genbank CDS 30811 31371 . + 0 ID=cds56;Dbxref=SEED:fig|6666666.217928.peg.3,NCBI_GP:AXC42668.1;Name=AXC42668.1;Note=label: orf57;gbkey=CDS;product=hypothetical protein;protein_id=AXC42668.1;transl_table=11 MH370387.1 Genbank CDS 31355 31855 . + 0 ID=cds57;Dbxref=SEED:fig|6666666.217928.peg.2,NCBI_GP:AXC42669.1;Name=AXC42669.1;Note=label: orf58;gbkey=CDS;product=DNA stabilizator;protein_id=AXC42669.1;transl_table=11 MH370387.1 Genbank CDS 31815 33233 . + 0 ID=cds58;Dbxref=SEED:fig|6666666.217928.peg.1,NCBI_GP:AXC42670.1;Name=AXC42670.1;Note=label: orf59;gbkey=CDS;product=DNA stabilizator;protein_id=AXC42670.1;transl_table=11 MH370387.1 Genbank CDS 33237 33938 . + 0 ID=cds59;Dbxref=NCBI_GP:AXC42671.1;Name=AXC42671.1;Note=similar to bacteriophage P22 gp26%3B label: orf60;gbkey=CDS;product=packaged DNA stabilization protein;protein_id=AXC42671.1;transl_table=11 MH370387.1 Genbank CDS 33938 34393 . + 0 ID=cds60;Dbxref=NCBI_GP:AXC42672.1;Name=AXC42672.1;Note=similar to bacteriophage HK620 and P22 gp14%3B label: orf61;gbkey=CDS;product=head assembly protein;protein_id=AXC42672.1;transl_table=11 MH370387.1 Genbank CDS 34396 35085 . + 0 ID=cds61;Dbxref=SEED:fig|6666666.217928.peg.63,NCBI_GP:AXC42673.1;Name=AXC42673.1;Note=label: orf62;gbkey=CDS;product=DNA transfer protein;protein_id=AXC42673.1;transl_table=11 MH370387.1 Genbank sequence_alteration 34577 34577 . + . ID=id1;Note=label: SNP with regards to phage ST104;gbkey=variation MH370387.1 Genbank CDS 35096 36532 . + 0 ID=cds62;Dbxref=SEED:fig|6666666.217928.peg.62,NCBI_GP:AXC42674.1;Name=AXC42674.1;Note=label: orf63;gbkey=CDS;product=DNA transfer protein;protein_id=AXC42674.1;transl_table=11 MH370387.1 Genbank CDS 36532 38508 . + 0 ID=cds63;Dbxref=SEED:fig|6666666.217928.peg.61,NCBI_GP:AXC42675.1;Name=AXC42675.1;Note=label: orf64;gbkey=CDS;product=DNA transfer protein;protein_id=AXC42675.1;transl_table=11 MH370387.1 Genbank CDS 38641 38940 . + 0 ID=cds64;Dbxref=SEED:fig|6666666.217928.peg.60,NCBI_GP:AXC42676.1;Name=AXC42676.1;Note=label: orf65;gbkey=CDS;product=putative lipoprotein;protein_id=AXC42676.1;transl_table=11 MH370387.1 Genbank CDS 38961 39209 . - 0 ID=cds65;Dbxref=SEED:fig|6666666.217928.peg.59,NCBI_GP:AXC42677.1;Name=AXC42677.1;Note=label: orf66;gbkey=CDS;product=regulatory Mnt;protein_id=AXC42677.1;transl_table=11 MH370387.1 Genbank CDS 39345 41348 . + 0 ID=cds66;Dbxref=SEED:fig|6666666.217928.peg.58,NCBI_GP:AXC42678.1;Name=AXC42678.1;Note=label: orf67;gbkey=CDS;product=tail spike protein;protein_id=AXC42678.1;transl_table=11 ###