locus-tag class description AM378_00005 PF13145 PPIC-type PPIASE domain AM378_00020 PF06508 Queuosine biosynthesis protein QueC AM378_00025 PF12793 Sugar transport-related sRNA regulator N-term AM378_00025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_00035 PF00291 Pyridoxal-phosphate dependent enzyme AM378_00040 PF13404 AsnC-type helix-turn-helix domain AM378_00040 PF01037 Lrp/AsnC ligand binding domain AM378_00045 PF00664 ABC transporter transmembrane region AM378_00045 PF00005 ABC transporter AM378_00050 PF00664 ABC transporter transmembrane region AM378_00050 PF00005 ABC transporter AM378_00055 PF00543 Nitrogen regulatory protein P-II AM378_00060 PF00909 Ammonium Transporter Family AM378_00070 PF09619 Type III secretion system lipoprotein chaperone (YscW) AM378_00075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM378_00105 PF00263 Bacterial type II and III secretion system protein AM378_00105 PF03958 Bacterial type II/III secretion system short domain AM378_00110 PF00437 Type II/IV secretion system protein AM378_00115 PF00482 Type II secretion system (T2SS), protein F AM378_00120 PF07963 Prokaryotic N-terminal methylation motif AM378_00120 PF08334 Type II secretion system (T2SS), protein G AM378_00125 PF07963 Prokaryotic N-terminal methylation motif AM378_00130 PF07963 Prokaryotic N-terminal methylation motif AM378_00130 PF02501 Type II secretion system (T2SS), protein I AM378_00135 PF11612 Type II secretion system (T2SS), protein J AM378_00135 PF07963 Prokaryotic N-terminal methylation motif AM378_00140 PF03934 Type II secretion system (T2SS), protein K AM378_00155 PF01478 Type IV leader peptidase family AM378_00155 PF06750 Bacterial Peptidase A24 N-terminal domain AM378_00160 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) AM378_00165 PF18416 N-acetylglucosamine binding protein domain 2 AM378_00165 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AM378_00175 PF05321 Haemolysin expression modulating protein AM378_00180 PF10757 Biofilm formation regulator YbaJ AM378_00190 PF00005 ABC transporter AM378_00195 PF00950 ABC 3 transport family AM378_00200 PF01297 Zinc-uptake complex component A periplasmic AM378_00205 PF00444 Ribosomal protein L36 AM378_00210 PF01197 Ribosomal protein L31 AM378_00215 PF00873 AcrB/AcrD/AcrF family AM378_00220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_00220 PF00529 HlyD membrane-fusion protein of T1SS AM378_00225 PF00440 Bacterial regulatory proteins, tetR family AM378_00225 PF08361 MAATS-type transcriptional repressor, C-terminal region AM378_00230 PF02635 DsrE/DsrF-like family AM378_00235 PF10689 Protein of unknown function (DUF2496) AM378_00245 PF04304 Protein of unknown function (DUF454) AM378_00250 PF00156 Phosphoribosyl transferase domain AM378_00255 PF12170 DNA polymerase III tau subunit V interacting with alpha AM378_00255 PF12169 DNA polymerase III subunits gamma and tau domain III AM378_00255 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AM378_00260 PF02575 YbaB/EbfC DNA-binding family AM378_00265 PF02132 RecR protein AM378_00265 PF13662 Toprim domain AM378_00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_00270 PF00183 Hsp90 protein AM378_00280 PF05191 Adenylate kinase, active site lid AM378_00285 PF17853 GGDEF-like domain AM378_00285 PF05651 Putative sugar diacid recognition AM378_00285 PF13556 PucR C-terminal helix-turn-helix domain AM378_00290 PF02447 GntP family permease AM378_00295 PF02595 Glycerate kinase family AM378_00300 PF00762 Ferrochelatase AM378_00305 PF00294 pfkB family carbohydrate kinase AM378_00310 PF00999 Sodium/hydrogen exchanger family AM378_00310 PF02254 TrkA-N domain AM378_00315 PF07690 Major Facilitator Superfamily AM378_00320 PF02872 5'-nucleotidase, C-terminal domain AM378_00320 PF00149 Calcineurin-like phosphoesterase AM378_00330 PF07690 Major Facilitator Superfamily AM378_00335 PF00975 Thioesterase domain AM378_00340 PF03301 Tryptophan 2,3-dioxygenase AM378_00350 PF00550 Phosphopantetheine attachment site AM378_00350 PF00501 AMP-binding enzyme AM378_00350 PF13193 AMP-binding enzyme C-terminal domain AM378_00350 PF07993 Male sterility protein AM378_00350 PF00668 Condensation domain AM378_00365 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM378_00370 PF04073 Aminoacyl-tRNA editing domain AM378_00375 PF01963 TraB family AM378_00380 PF00403 Heavy-metal-associated domain AM378_00385 PF13411 MerR HTH family regulatory protein AM378_00390 PF01957 NfeD-like C-terminal, partner-binding AM378_00395 PF16200 C-terminal region of band_7 AM378_00395 PF01145 SPFH domain / Band 7 family AM378_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_00400 PF03466 LysR substrate binding domain AM378_00405 PF04115 Ureidoglycolate lyase AM378_00410 PF09339 IclR helix-turn-helix domain AM378_00410 PF01614 Bacterial transcriptional regulator AM378_00415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_00415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_00415 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_00420 PF01261 Xylose isomerase-like TIM barrel AM378_00425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM378_00425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM378_00430 PF07690 Major Facilitator Superfamily AM378_00435 PF02595 Glycerate kinase family AM378_00440 PF07883 Cupin domain AM378_00440 PF05899 Protein of unknown function (DUF861) AM378_00450 PF01546 Peptidase family M20/M25/M40 AM378_00455 PF02615 Malate/L-lactate dehydrogenase AM378_00460 PF02629 CoA binding domain AM378_00460 PF00549 CoA-ligase AM378_00465 PF06545 Protein of unknown function (DUF1116) AM378_00470 PF11392 Protein of unknown function (DUF2877) AM378_00475 PF00696 Amino acid kinase family AM378_00485 PF00085 Thioredoxin AM378_00490 PF00106 short chain dehydrogenase AM378_00495 PF13472 GDSL-like Lipase/Acylhydrolase family AM378_00500 PF00005 ABC transporter AM378_00510 PF00083 Sugar (and other) transporter AM378_00515 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AM378_00515 PF02222 ATP-grasp domain AM378_00520 PF00731 AIR carboxylase AM378_00525 PF00149 Calcineurin-like phosphoesterase AM378_00530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM378_00535 PF01406 tRNA synthetases class I (C) catalytic domain AM378_00535 PF09190 DALR domain AM378_00545 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AM378_00545 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AM378_00570 PF03358 NADPH-dependent FMN reductase AM378_00575 PF00990 Diguanylate cyclase, GGDEF domain AM378_00580 PF00313 'Cold-shock' DNA-binding domain AM378_00590 PF00005 ABC transporter AM378_00595 PF00528 Binding-protein-dependent transport system inner membrane component AM378_00610 PF00296 Luciferase-like monooxygenase AM378_00620 PF00313 'Cold-shock' DNA-binding domain AM378_00625 PF07690 Major Facilitator Superfamily AM378_00630 PF00440 Bacterial regulatory proteins, tetR family AM378_00630 PF17922 Tetracyclin repressor-like, C-terminal domain AM378_00635 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM378_00640 PF05230 MASE2 domain AM378_00640 PF00990 Diguanylate cyclase, GGDEF domain AM378_00645 PF02416 mttA/Hcf106 family AM378_00650 PF04055 Radical SAM superfamily AM378_00650 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AM378_00655 PF03099 Biotin/lipoate A/B protein ligase family AM378_00660 PF04359 Protein of unknown function (DUF493) AM378_00665 PF07943 Penicillin-binding protein 5, C-terminal domain AM378_00665 PF00768 D-alanyl-D-alanine carboxypeptidase AM378_00670 PF03330 Lytic transglycolase AM378_00670 PF05036 Sporulation related domain AM378_00675 PF01098 Cell cycle protein AM378_00680 PF00905 Penicillin binding protein transpeptidase domain AM378_00680 PF03717 Penicillin-binding Protein dimerisation domain AM378_00685 PF02590 Predicted SPOUT methyltransferase AM378_00695 PF01467 Cytidylyltransferase-like AM378_00700 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AM378_00700 PF06144 DNA polymerase III, delta subunit AM378_00705 PF04390 Lipopolysaccharide-assembly AM378_00710 PF13603 Leucyl-tRNA synthetase, Domain 2 AM378_00710 PF08264 Anticodon-binding domain of tRNA AM378_00710 PF00133 tRNA synthetases class I (I, L, M and V) AM378_00715 PF07295 Zinc-ribbon containing domain AM378_00720 PF02525 Flavodoxin-like fold AM378_00725 PF01156 Inosine-uridine preferring nucleoside hydrolase AM378_00735 PF00005 ABC transporter AM378_00740 PF00528 Binding-protein-dependent transport system inner membrane component AM378_00745 PF00528 Binding-protein-dependent transport system inner membrane component AM378_00750 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_00755 PF00795 Carbon-nitrogen hydrolase AM378_00760 PF00571 CBS domain AM378_00760 PF03471 Transporter associated domain AM378_00765 PF02130 Uncharacterized protein family UPF0054 AM378_00770 PF02562 PhoH-like protein AM378_00775 PF03831 PhnA domain AM378_00775 PF08274 PhnA Zinc-Ribbon AM378_00780 PF01938 TRAM domain AM378_00780 PF00919 Uncharacterized protein family UPF0004 AM378_00780 PF04055 Radical SAM superfamily AM378_00785 PF01494 FAD binding domain AM378_00820 PF13537 Glutamine amidotransferase domain AM378_00820 PF00733 Asparagine synthase AM378_00825 PF00704 Glycosyl hydrolases family 18 AM378_00830 PF13344 Haloacid dehalogenase-like hydrolase AM378_00835 PF01047 MarR family AM378_00835 PF00480 ROK family AM378_00840 PF01979 Amidohydrolase family AM378_00845 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AM378_00850 PF00367 phosphotransferase system, EIIB AM378_00850 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM378_00850 PF02378 Phosphotransferase system, EIIC AM378_00855 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AM378_00855 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM378_00860 PF03573 outer membrane porin, OprD family AM378_00865 PF13982 YbfN-like lipoprotein AM378_00870 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AM378_00870 PF03173 Putative carbohydrate binding domain AM378_00870 PF02838 Glycosyl hydrolase family 20, domain 2 AM378_00870 PF00728 Glycosyl hydrolase family 20, catalytic domain AM378_00875 PF01475 Ferric uptake regulator family AM378_00880 PF00258 Flavodoxin AM378_00885 PF01402 Ribbon-helix-helix protein, copG family AM378_00890 PF12697 Alpha/beta hydrolase family AM378_00895 PF17206 SeqA protein N-terminal domain AM378_00895 PF03925 SeqA protein C-terminal domain AM378_00900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM378_00900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM378_00900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM378_00900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM378_00905 PF03551 Transcriptional regulator PadR-like family AM378_00915 PF00072 Response regulator receiver domain AM378_00915 PF00486 Transcriptional regulatory protein, C terminal AM378_00920 PF13493 Domain of unknown function (DUF4118) AM378_00920 PF13492 GAF domain AM378_00920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_00920 PF00512 His Kinase A (phospho-acceptor) domain AM378_00920 PF02702 Osmosensitive K+ channel His kinase sensor domain AM378_00925 PF02669 K+-transporting ATPase, c chain AM378_00935 PF03814 Potassium-transporting ATPase A subunit AM378_00945 PF10725 Protein of unknown function (DUF2517) AM378_00950 PF08349 Protein of unknown function (DUF1722) AM378_00955 PF03441 FAD binding domain of DNA photolyase AM378_00955 PF00875 DNA photolyase AM378_00960 PF02112 cAMP phosphodiesterases class-II AM378_00965 PF01784 NIF3 (NGG1p interacting factor 3) AM378_00970 PF02682 Carboxyltransferase domain, subdomain C and D AM378_00975 PF02626 Carboxyltransferase domain, subdomain A and B AM378_00980 PF03746 LamB/YcsF family AM378_00995 PF01470 Pyroglutamyl peptidase AM378_01000 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM378_01000 PF06827 Zinc finger found in FPG and IleRS AM378_01000 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM378_01005 PF00285 Citrate synthase, C-terminal domain AM378_01010 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM378_01015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AM378_01020 PF00890 FAD binding domain AM378_01020 PF02910 Fumarate reductase flavoprotein C-term AM378_01025 PF13085 2Fe-2S iron-sulfur cluster binding domain AM378_01030 PF02779 Transketolase, pyrimidine binding domain AM378_01030 PF16078 2-oxoglutarate dehydrogenase N-terminus AM378_01030 PF16870 2-oxoglutarate dehydrogenase C-terminal AM378_01030 PF00676 Dehydrogenase E1 component AM378_01035 PF02817 e3 binding domain AM378_01035 PF00364 Biotin-requiring enzyme AM378_01035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM378_01040 PF08442 ATP-grasp domain AM378_01040 PF00549 CoA-ligase AM378_01045 PF00549 CoA-ligase AM378_01045 PF02629 CoA binding domain AM378_01050 PF00149 Calcineurin-like phosphoesterase AM378_01050 PF02872 5'-nucleotidase, C-terminal domain AM378_01055 PF01654 Cytochrome bd terminal oxidase subunit I AM378_01060 PF02322 Cytochrome bd terminal oxidase subunit II AM378_01065 PF08173 Membrane bound YbgT-like protein AM378_01070 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AM378_01075 PF03061 Thioesterase superfamily AM378_01080 PF01618 MotA/TolQ/ExbB proton channel family AM378_01085 PF02472 Biopolymer transport protein ExbD/TolR AM378_01090 PF06519 TolA C-terminal AM378_01090 PF06519 TolA C-terminal AM378_01095 PF04052 TolB amino-terminal domain AM378_01095 PF07676 WD40-like Beta Propeller Repeat AM378_01100 PF00691 OmpA family AM378_01105 PF16331 TolA binding protein trimerisation AM378_01105 PF13174 Tetratricopeptide repeat AM378_01155 PF02445 Quinolinate synthetase A protein AM378_01160 PF04973 Nicotinamide mononucleotide transporter AM378_01165 PF01545 Cation efflux family AM378_01170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_01170 PF00072 Response regulator receiver domain AM378_01170 PF00989 PAS fold AM378_01170 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_01170 PF01627 Hpt domain AM378_01170 PF00512 His Kinase A (phospho-acceptor) domain AM378_01175 PF00196 Bacterial regulatory proteins, luxR family AM378_01175 PF00072 Response regulator receiver domain AM378_01180 PF00793 DAHP synthetase I family AM378_01195 PF00300 Histidine phosphatase superfamily (branch 1) AM378_01205 PF01263 Aldose 1-epimerase AM378_01210 PF08544 GHMP kinases C terminal AM378_01210 PF00288 GHMP kinases N terminal domain AM378_01210 PF10509 Galactokinase galactose-binding signature AM378_01215 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AM378_01215 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AM378_01230 PF00005 ABC transporter AM378_01235 PF03459 TOBE domain AM378_01235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_01240 PF07715 TonB-dependent Receptor Plug Domain AM378_01240 PF00593 TonB dependent receptor AM378_01250 PF05175 Methyltransferase small domain AM378_01255 PF01032 FecCD transport family AM378_01260 PF00005 ABC transporter AM378_01265 PF10766 Multidrug efflux pump-associated protein AcrZ AM378_01275 PF00528 Binding-protein-dependent transport system inner membrane component AM378_01280 PF03459 TOBE domain AM378_01280 PF00005 ABC transporter AM378_01290 PF10282 Lactonase, 7-bladed beta-propeller AM378_01295 PF01161 Phosphatidylethanolamine-binding protein AM378_01305 PF00202 Aminotransferase class-III AM378_01310 PF06968 Biotin and Thiamin Synthesis associated domain AM378_01310 PF04055 Radical SAM superfamily AM378_01315 PF00155 Aminotransferase class I and II AM378_01320 PF08241 Methyltransferase domain AM378_01330 PF09383 NIL domain AM378_01330 PF00005 ABC transporter AM378_01335 PF00271 Helicase conserved C-terminal domain AM378_01335 PF04851 Type III restriction enzyme, res subunit AM378_01335 PF02151 UvrB/uvrC motif AM378_01335 PF12344 Ultra-violet resistance protein B AM378_01335 PF17757 UvrB interaction domain AM378_01340 PF09905 DNA-binding protein VF530 AM378_01345 PF01933 Uncharacterised protein family UPF0052 AM378_01350 PF04055 Radical SAM superfamily AM378_01350 PF06463 Molybdenum Cofactor Synthesis C AM378_01355 PF00994 Probable molybdopterin binding domain AM378_01360 PF01967 MoaC family AM378_01365 PF02597 ThiS family AM378_01370 PF02391 MoaE protein AM378_01375 PF01027 Inhibitor of apoptosis-promoting Bax1 AM378_01390 PF00005 ABC transporter AM378_01395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_01400 PF00440 Bacterial regulatory proteins, tetR family AM378_01400 PF09209 Tetracyclin repressor-like, C-terminal domain AM378_01405 PF00270 DEAD/DEAH box helicase AM378_01405 PF00271 Helicase conserved C-terminal domain AM378_01410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM378_01410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM378_01415 PF01207 Dihydrouridine synthase (Dus) AM378_01425 PF00005 ABC transporter AM378_01425 PF08402 TOBE domain AM378_01430 PF00528 Binding-protein-dependent transport system inner membrane component AM378_01440 PF07690 Major Facilitator Superfamily AM378_01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_01445 PF05231 MASE1 AM378_01445 PF07730 Histidine kinase AM378_01450 PF00072 Response regulator receiver domain AM378_01450 PF00196 Bacterial regulatory proteins, luxR family AM378_01455 PF00797 N-acetyltransferase AM378_01465 PF03466 LysR substrate binding domain AM378_01465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_01475 PF00324 Amino acid permease AM378_01485 PF03466 LysR substrate binding domain AM378_01485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_01490 PF09335 SNARE associated Golgi protein AM378_01495 PF01965 DJ-1/PfpI family AM378_01500 PF12833 Helix-turn-helix domain AM378_01500 PF01965 DJ-1/PfpI family AM378_01505 PF05221 S-adenosyl-L-homocysteine hydrolase AM378_01505 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM378_01510 PF00768 D-alanyl-D-alanine carboxypeptidase AM378_01530 PF05661 Protein of unknown function (DUF808) AM378_01540 PF03180 NLPA lipoprotein AM378_01550 PF00583 Acetyltransferase (GNAT) family AM378_01560 PF04893 Yip1 domain AM378_01570 PF00005 ABC transporter AM378_01580 PF01032 FecCD transport family AM378_01585 PF00667 FAD binding domain AM378_01585 PF00258 Flavodoxin AM378_01585 PF00175 Oxidoreductase NAD-binding domain AM378_01590 PF08447 PAS fold AM378_01590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_01595 PF09330 D-lactate dehydrogenase, membrane binding AM378_01595 PF01565 FAD binding domain AM378_01600 PF00557 Metallopeptidase family M24 AM378_01610 PF07478 D-ala D-ala ligase C-terminus AM378_01610 PF01820 D-ala D-ala ligase N-terminus AM378_01615 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_01620 PF00155 Aminotransferase class I and II AM378_01625 PF03466 LysR substrate binding domain AM378_01625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_01630 PF01915 Glycosyl hydrolase family 3 C-terminal domain AM378_01630 PF00933 Glycosyl hydrolase family 3 N terminal domain AM378_01630 PF14310 Fibronectin type III-like domain AM378_01670 PF00561 alpha/beta hydrolase fold AM378_01675 PF02611 CDP-diacylglycerol pyrophosphatase AM378_01685 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_01685 PF00034 Cytochrome c AM378_01690 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_01690 PF01799 [2Fe-2S] binding domain AM378_01695 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_01705 PF13614 AAA domain AM378_01710 PF01844 HNH endonuclease AM378_01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_01715 PF03466 LysR substrate binding domain AM378_01720 PF07690 Major Facilitator Superfamily AM378_01725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_01725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_01730 PF03992 Antibiotic biosynthesis monooxygenase AM378_01735 PF00892 EamA-like transporter family AM378_01740 PF01810 LysE type translocator AM378_01745 PF02311 AraC-like ligand binding domain AM378_01745 PF12833 Helix-turn-helix domain AM378_01760 PF02806 Alpha amylase, C-terminal all-beta domain AM378_01760 PF00128 Alpha amylase, catalytic domain AM378_01765 PF05643 Putative bacterial lipoprotein (DUF799) AM378_01775 PF03783 Curli production assembly/transport component CsgG AM378_01780 PF00583 Acetyltransferase (GNAT) family AM378_01790 PF01678 Diaminopimelate epimerase AM378_01795 PF07338 Protein of unknown function (DUF1471) AM378_01800 PF07338 Protein of unknown function (DUF1471) AM378_01805 PF00440 Bacterial regulatory proteins, tetR family AM378_01810 PF03180 NLPA lipoprotein AM378_01815 PF00528 Binding-protein-dependent transport system inner membrane component AM378_01820 PF09383 NIL domain AM378_01820 PF00005 ABC transporter AM378_01825 PF00958 GMP synthase C terminal domain AM378_01825 PF03352 Methyladenine glycosylase AM378_01825 PF13302 Acetyltransferase (GNAT) domain AM378_01825 PF13673 Acetyltransferase (GNAT) domain AM378_01825 PF00117 Glutamine amidotransferase class-I AM378_01845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM378_01845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM378_01850 PF00579 tRNA synthetases class I (W and Y) AM378_01855 PF00005 ABC transporter AM378_01865 PF00528 Binding-protein-dependent transport system inner membrane component AM378_01870 PF00528 Binding-protein-dependent transport system inner membrane component AM378_01875 PF07308 Protein of unknown function (DUF1456) AM378_01885 PF01425 Amidase AM378_01890 PF00289 Biotin carboxylase, N-terminal domain AM378_01890 PF00364 Biotin-requiring enzyme AM378_01890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM378_01890 PF02785 Biotin carboxylase C-terminal domain AM378_01895 PF07729 FCD domain AM378_01895 PF00392 Bacterial regulatory proteins, gntR family AM378_01900 PF13458 Periplasmic binding protein AM378_01905 PF02653 Branched-chain amino acid transport system / permease component AM378_01910 PF02653 Branched-chain amino acid transport system / permease component AM378_01915 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM378_01915 PF00005 ABC transporter AM378_01920 PF00005 ABC transporter AM378_01945 PF01494 FAD binding domain AM378_01955 PF03466 LysR substrate binding domain AM378_01955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_01960 PF00581 Rhodanese-like domain AM378_01965 PF00293 NUDIX domain AM378_01970 PF00155 Aminotransferase class I and II AM378_01970 PF00392 Bacterial regulatory proteins, gntR family AM378_01980 PF13417 Glutathione S-transferase, N-terminal domain AM378_01980 PF00043 Glutathione S-transferase, C-terminal domain AM378_01985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM378_01985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_01990 PF07969 Amidohydrolase family AM378_02000 PF00857 Isochorismatase family AM378_02005 PF03466 LysR substrate binding domain AM378_02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_02020 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM378_02025 PF00528 Binding-protein-dependent transport system inner membrane component AM378_02030 PF00005 ABC transporter AM378_02035 PF00528 Binding-protein-dependent transport system inner membrane component AM378_02055 PF00892 EamA-like transporter family AM378_02070 PF07690 Major Facilitator Superfamily AM378_02085 PF13673 Acetyltransferase (GNAT) domain AM378_02090 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AM378_02095 PF00583 Acetyltransferase (GNAT) family AM378_02095 PF13380 CoA binding domain AM378_02095 PF13607 Succinyl-CoA ligase like flavodoxin domain AM378_02100 PF00267 Gram-negative porin AM378_02105 PF13417 Glutathione S-transferase, N-terminal domain AM378_02110 PF02627 Carboxymuconolactone decarboxylase family AM378_02115 PF14552 Tautomerase enzyme AM378_02120 PF13307 Helicase C-terminal domain AM378_02120 PF06733 DEAD_2 AM378_02125 PF01037 Lrp/AsnC ligand binding domain AM378_02130 PF00892 EamA-like transporter family AM378_02135 PF02954 Bacterial regulatory protein, Fis family AM378_02135 PF06506 Propionate catabolism activator AM378_02135 PF00158 Sigma-54 interaction domain AM378_02145 PF00285 Citrate synthase, C-terminal domain AM378_02150 PF03972 MmgE/PrpD family AM378_02155 PF01810 LysE type translocator AM378_02165 PF07690 Major Facilitator Superfamily AM378_02175 PF02885 Glycosyl transferase family, helical bundle domain AM378_02185 PF00484 Carbonic anhydrase AM378_02190 PF07338 Protein of unknown function (DUF1471) AM378_02195 PF01613 Flavin reductase like domain AM378_02200 PF05971 RNA methyltransferase AM378_02210 PF08447 PAS fold AM378_02210 PF13426 PAS domain AM378_02210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_02215 PF00924 Mechanosensitive ion channel AM378_02220 PF00005 ABC transporter AM378_02225 PF00528 Binding-protein-dependent transport system inner membrane component AM378_02230 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_02235 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM378_02240 PF00210 Ferritin-like domain AM378_02245 PF02224 Cytidylate kinase AM378_02250 PF04074 YhcH/YjgK/YiaL AM378_02255 PF00892 EamA-like transporter family AM378_02260 PF13505 Outer membrane protein beta-barrel domain AM378_02265 PF00795 Carbon-nitrogen hydrolase AM378_02270 PF03466 LysR substrate binding domain AM378_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_02280 PF02447 GntP family permease AM378_02285 PF01261 Xylose isomerase-like TIM barrel AM378_02290 PF00596 Class II Aldolase and Adducin N-terminal domain AM378_02295 PF07005 Sugar-binding N-terminal domain AM378_02295 PF17042 Nucleotide-binding C-terminal domain AM378_02300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM378_02300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AM378_02305 PF08220 DeoR-like helix-turn-helix domain AM378_02305 PF00455 DeoR C terminal sensor domain AM378_02315 PF00174 Oxidoreductase molybdopterin binding domain AM378_02320 PF01292 Prokaryotic cytochrome b561 AM378_02330 PF00486 Transcriptional regulatory protein, C terminal AM378_02330 PF00072 Response regulator receiver domain AM378_02335 PF00512 His Kinase A (phospho-acceptor) domain AM378_02335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_02335 PF00672 HAMP domain AM378_02350 PF16449 Fimbrillin MatB AM378_02355 PF18649 EcpB C-terminal domain AM378_02360 PF16967 E-set like domain AM378_02360 PF15976 CS1-pili formation C-terminal AM378_02375 PF00672 HAMP domain AM378_02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_02375 PF18698 Histidine kinase sensor domain AM378_02375 PF00512 His Kinase A (phospho-acceptor) domain AM378_02375 PF00989 PAS fold AM378_02380 PF00072 Response regulator receiver domain AM378_02380 PF00486 Transcriptional regulatory protein, C terminal AM378_02385 PF01292 Prokaryotic cytochrome b561 AM378_02390 PF00174 Oxidoreductase molybdopterin binding domain AM378_02405 PF02028 BCCT, betaine/carnitine/choline family transporter AM378_02410 PF13977 BetI-type transcriptional repressor, C-terminal AM378_02410 PF00440 Bacterial regulatory proteins, tetR family AM378_02415 PF00171 Aldehyde dehydrogenase family AM378_02420 PF05199 GMC oxidoreductase AM378_02420 PF00732 GMC oxidoreductase AM378_02425 PF01645 Conserved region in glutamate synthase AM378_02435 PF00563 EAL domain AM378_02440 PF00419 Fimbrial protein AM378_02445 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_02445 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_02450 PF00577 Outer membrane usher protein AM378_02450 PF13954 PapC N-terminal domain AM378_02450 PF13953 PapC C-terminal domain AM378_02460 PF06445 GyrI-like small molecule binding domain AM378_02460 PF12833 Helix-turn-helix domain AM378_02465 PF06039 Malate:quinone oxidoreductase (Mqo) AM378_02470 PF00245 Alkaline phosphatase AM378_02475 PF00043 Glutathione S-transferase, C-terminal domain AM378_02475 PF02798 Glutathione S-transferase, N-terminal domain AM378_02490 PF00857 Isochorismatase family AM378_02495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_02495 PF03466 LysR substrate binding domain AM378_02510 PF02560 Cyanate lyase C-terminal domain AM378_02515 PF00484 Carbonic anhydrase AM378_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_02520 PF03466 LysR substrate binding domain AM378_02525 PF07690 Major Facilitator Superfamily AM378_02530 PF00005 ABC transporter AM378_02530 PF12848 ABC transporter AM378_02535 PF00899 ThiF family AM378_02540 PF03453 MoeA N-terminal region (domain I and II) AM378_02540 PF03454 MoeA C-terminal region (domain IV) AM378_02540 PF00994 Probable molybdopterin binding domain AM378_02550 PF01112 Asparaginase AM378_02555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_02555 PF00005 ABC transporter AM378_02560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_02565 PF00528 Binding-protein-dependent transport system inner membrane component AM378_02570 PF12911 N-terminal TM domain of oligopeptide transport permease C AM378_02570 PF00528 Binding-protein-dependent transport system inner membrane component AM378_02585 PF00756 Putative esterase AM378_02590 PF08240 Alcohol dehydrogenase GroES-like domain AM378_02590 PF00107 Zinc-binding dehydrogenase AM378_02595 PF03466 LysR substrate binding domain AM378_02595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_02600 PF06779 Uncharacterised MFS-type transporter YbfB AM378_02605 PF01227 GTP cyclohydrolase I AM378_02610 PF04235 Protein of unknown function (DUF418) AM378_02615 PF00356 Bacterial regulatory proteins, lacI family AM378_02620 PF13407 Periplasmic binding protein domain AM378_02625 PF00005 ABC transporter AM378_02630 PF02653 Branched-chain amino acid transport system / permease component AM378_02635 PF02698 DUF218 domain AM378_02640 PF03949 Malic enzyme, NAD binding domain AM378_02640 PF00390 Malic enzyme, N-terminal domain AM378_02645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM378_02645 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AM378_02650 PF04172 LrgB-like family AM378_02655 PF03788 LrgA family AM378_02660 PF07690 Major Facilitator Superfamily AM378_02670 PF01588 Putative tRNA binding domain AM378_02670 PF09334 tRNA synthetases class I (M) AM378_02675 PF10609 NUBPL iron-transfer P-loop NTPase AM378_02680 PF01569 PAP2 superfamily AM378_02685 PF00485 Phosphoribulokinase / Uridine kinase family AM378_02690 PF00692 dUTPase AM378_02695 PF05170 AsmA family AM378_02700 PF03606 C4-dicarboxylate anaerobic carrier AM378_02705 PF03741 Integral membrane protein TerC family AM378_02705 PF03471 Transporter associated domain AM378_02705 PF00571 CBS domain AM378_02710 PF00483 Nucleotidyl transferase AM378_02715 PF00483 Nucleotidyl transferase AM378_02720 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AM378_02720 PF10531 SLBB domain AM378_02720 PF02563 Polysaccharide biosynthesis/export protein AM378_02725 PF01451 Low molecular weight phosphotyrosine protein phosphatase AM378_02730 PF13807 G-rich domain on putative tyrosine kinase AM378_02730 PF13614 AAA domain AM378_02730 PF02706 Chain length determinant protein AM378_02735 PF02348 Cytidylyltransferase AM378_02740 PF03102 NeuB family AM378_02740 PF08666 SAF domain AM378_02745 PF01943 Polysaccharide biosynthesis protein AM378_02750 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_02760 PF00534 Glycosyl transferases group 1 AM378_02760 PF13439 Glycosyltransferase Family 4 AM378_02770 PF00534 Glycosyl transferases group 1 AM378_02770 PF13439 Glycosyltransferase Family 4 AM378_02775 PF00534 Glycosyl transferases group 1 AM378_02775 PF13439 Glycosyltransferase Family 4 AM378_02780 PF01050 Mannose-6-phosphate isomerase AM378_02780 PF00483 Nucleotidyl transferase AM378_02785 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM378_02785 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM378_02785 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM378_02785 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM378_02790 PF02397 Bacterial sugar transferase AM378_02805 PF00005 ABC transporter AM378_02805 PF00664 ABC transporter transmembrane region AM378_02810 PF00529 HlyD membrane-fusion protein of T1SS AM378_02815 PF02321 Outer membrane efflux protein AM378_02830 PF16363 GDP-mannose 4,6 dehydratase AM378_02835 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AM378_02840 PF04321 RmlD substrate binding domain AM378_02845 PF01061 ABC-2 type transporter AM378_02850 PF00005 ABC transporter AM378_02850 PF14524 Wzt C-terminal domain AM378_02870 PF00535 Glycosyl transferase family 2 AM378_02880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AM378_02880 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AM378_02885 PF01502 Phosphoribosyl-AMP cyclohydrolase AM378_02885 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AM378_02890 PF00977 Histidine biosynthesis protein AM378_02895 PF00977 Histidine biosynthesis protein AM378_02900 PF00117 Glutamine amidotransferase class-I AM378_02905 PF00475 Imidazoleglycerol-phosphate dehydratase AM378_02910 PF00155 Aminotransferase class I and II AM378_02915 PF00815 Histidinol dehydrogenase AM378_02920 PF01634 ATP phosphoribosyltransferase AM378_02920 PF08029 HisG, C-terminal domain AM378_02930 PF01370 NAD dependent epimerase/dehydratase family AM378_02935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_02935 PF03466 LysR substrate binding domain AM378_02940 PF00491 Arginase family AM378_02945 PF00474 Sodium:solute symporter family AM378_02950 PF00795 Carbon-nitrogen hydrolase AM378_02950 PF00583 Acetyltransferase (GNAT) family AM378_02955 PF01544 CorA-like Mg2+ transporter protein AM378_02965 PF07995 Glucose / Sorbosone dehydrogenase AM378_02970 PF13417 Glutathione S-transferase, N-terminal domain AM378_02970 PF00043 Glutathione S-transferase, C-terminal domain AM378_02985 PF01053 Cys/Met metabolism PLP-dependent enzyme AM378_02990 PF00571 CBS domain AM378_02990 PF00291 Pyridoxal-phosphate dependent enzyme AM378_02995 PF07943 Penicillin-binding protein 5, C-terminal domain AM378_02995 PF00768 D-alanyl-D-alanine carboxypeptidase AM378_03000 PF00419 Fimbrial protein AM378_03005 PF00419 Fimbrial protein AM378_03015 PF00419 Fimbrial protein AM378_03020 PF00419 Fimbrial protein AM378_03025 PF00577 Outer membrane usher protein AM378_03025 PF13954 PapC N-terminal domain AM378_03025 PF13953 PapC C-terminal domain AM378_03030 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_03030 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_03050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_03050 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM378_03055 PF00072 Response regulator receiver domain AM378_03055 PF00196 Bacterial regulatory proteins, luxR family AM378_03060 PF03313 Serine dehydratase alpha chain AM378_03060 PF03315 Serine dehydratase beta chain AM378_03070 PF08220 DeoR-like helix-turn-helix domain AM378_03070 PF00455 DeoR C terminal sensor domain AM378_03075 PF01791 DeoC/LacD family aldolase AM378_03085 PF01569 PAP2 superfamily AM378_03100 PF03974 Ecotin AM378_03105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_03105 PF03466 LysR substrate binding domain AM378_03110 PF07005 Sugar-binding N-terminal domain AM378_03110 PF17042 Nucleotide-binding C-terminal domain AM378_03115 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM378_03155 PF07022 Bacteriophage CI repressor helix-turn-helix domain AM378_03155 PF16452 Bacteriophage CI repressor C-terminal domain AM378_03165 PF06892 Phage regulatory protein CII (CP76) AM378_03185 PF06826 Predicted Permease Membrane Region AM378_03185 PF02080 TrkA-C domain AM378_03190 PF11045 Putative inner membrane protein of Enterobacteriaceae AM378_03195 PF00462 Glutaredoxin AM378_03200 PF07214 Protein of unknown function (DUF1418) AM378_03205 PF18030 RimK PreATP-grasp domain AM378_03205 PF08443 RimK-like ATP-grasp domain AM378_03210 PF10722 Putative bacterial sensory transduction regulator AM378_03215 PF13416 Bacterial extracellular solute-binding protein AM378_03220 PF00005 ABC transporter AM378_03220 PF08402 TOBE domain AM378_03225 PF00528 Binding-protein-dependent transport system inner membrane component AM378_03230 PF00528 Binding-protein-dependent transport system inner membrane component AM378_03235 PF10767 Protein of unknown function (DUF2593) AM378_03240 PF05958 tRNA (Uracil-5-)-methyltransferase AM378_03245 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AM378_03255 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_03260 PF00528 Binding-protein-dependent transport system inner membrane component AM378_03265 PF00528 Binding-protein-dependent transport system inner membrane component AM378_03270 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_03275 PF00005 ABC transporter AM378_03280 PF12883 Protein of unknown function (DUF3828) AM378_03285 PF01906 Putative heavy-metal-binding AM378_03290 PF01510 N-acetylmuramoyl-L-alanine amidase AM378_03295 PF01370 NAD dependent epimerase/dehydratase family AM378_03300 PF13460 NAD(P)H-binding AM378_03300 PF11066 Protein of unknown function (DUF2867) AM378_03310 PF01418 Helix-turn-helix domain, rpiR family AM378_03310 PF01380 SIS domain AM378_03315 PF00367 phosphotransferase system, EIIB AM378_03315 PF02378 Phosphotransferase system, EIIC AM378_03315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM378_03320 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AM378_03325 PF01212 Beta-eliminating lyase AM378_03330 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_03330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_03330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_03335 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_03335 PF00970 Oxidoreductase FAD-binding domain AM378_03335 PF00175 Oxidoreductase NAD-binding domain AM378_03340 PF03063 Prismane/CO dehydrogenase family AM378_03345 PF03956 Lysine exporter LysO AM378_03350 PF11398 Protein of unknown function (DUF2813) AM378_03355 PF04393 Protein of unknown function (DUF535) AM378_03360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_03365 PF00005 ABC transporter AM378_03365 PF02687 FtsX-like permease family AM378_03365 PF12704 MacB-like periplasmic core domain AM378_03370 PF00313 'Cold-shock' DNA-binding domain AM378_03375 PF02617 ATP-dependent Clp protease adaptor protein ClpS AM378_03380 PF00004 ATPase family associated with various cellular activities (AAA) AM378_03380 PF07724 AAA domain (Cdc48 subfamily) AM378_03380 PF10431 C-terminal, D2-small domain, of ClpB protein AM378_03380 PF02861 Clp amino terminal domain, pathogenicity island component AM378_03380 PF17871 AAA lid domain AM378_03385 PF01176 Translation initiation factor 1A / IF-1 AM378_03390 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AM378_03395 PF00664 ABC transporter transmembrane region AM378_03395 PF00005 ABC transporter AM378_03400 PF00664 ABC transporter transmembrane region AM378_03400 PF00005 ABC transporter AM378_03405 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_03410 PF01037 Lrp/AsnC ligand binding domain AM378_03415 PF01580 FtsK/SpoIIIE family AM378_03415 PF17854 FtsK alpha domain AM378_03415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AM378_03415 PF09397 Ftsk gamma domain AM378_03420 PF03548 Outer membrane lipoprotein carrier protein LolA AM378_03425 PF16193 AAA C-terminal domain AM378_03425 PF12002 MgsA AAA+ ATPase C terminal AM378_03425 PF00004 ATPase family associated with various cellular activities (AAA) AM378_03430 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM378_03430 PF02403 Seryl-tRNA synthetase N-terminal domain AM378_03440 PF07690 Major Facilitator Superfamily AM378_03445 PF04055 Radical SAM superfamily AM378_03450 PF02901 Pyruvate formate lyase-like AM378_03450 PF01228 Glycine radical AM378_03455 PF01226 Formate/nitrite transporter AM378_03460 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AM378_03460 PF18381 YcaO cyclodehydratase C-terminal domain AM378_03465 PF17763 Glutaminase/Asparaginase C-terminal domain AM378_03465 PF00710 Asparaginase, N-terminal AM378_03470 PF00266 Aminotransferase class-V AM378_03475 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM378_03480 PF02224 Cytidylate kinase AM378_03485 PF00575 S1 RNA binding domain AM378_03490 PF00216 Bacterial DNA-binding protein AM378_03495 PF03772 Competence protein AM378_03495 PF00753 Metallo-beta-lactamase superfamily AM378_03500 PF00005 ABC transporter AM378_03500 PF00664 ABC transporter transmembrane region AM378_03505 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AM378_03510 PF07063 Domain of unknown function (DUF1338) AM378_03515 PF00313 'Cold-shock' DNA-binding domain AM378_03520 PF00313 'Cold-shock' DNA-binding domain AM378_03525 PF06224 Winged helix DNA-binding domain AM378_03530 PF03966 Trm112p-like protein AM378_03535 PF02348 Cytidylyltransferase AM378_03540 PF01636 Phosphotransferase enzyme family AM378_03545 PF02698 DUF218 domain AM378_03555 PF17193 MukF C-terminal domain AM378_03555 PF03882 MukF winged-helix domain AM378_03555 PF17192 MukF middle domain AM378_03560 PF04288 MukE-like family AM378_03565 PF16330 MukB hinge domain AM378_03565 PF04310 MukB N-terminal AM378_03570 PF03734 L,D-transpeptidase catalytic domain AM378_03570 PF01471 Putative peptidoglycan binding domain AM378_03575 PF05951 Bacterial protein of unknown function (DUF882) AM378_03580 PF00753 Metallo-beta-lactamase superfamily AM378_03585 PF00155 Aminotransferase class I and II AM378_03590 PF00267 Gram-negative porin AM378_03595 PF01336 OB-fold nucleic acid binding domain AM378_03595 PF00152 tRNA synthetases class II (D, K and N) AM378_03600 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AM378_03600 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AM378_03605 PF00990 Diguanylate cyclase, GGDEF domain AM378_03605 PF05230 MASE2 domain AM378_03610 PF01433 Peptidase family M1 domain AM378_03610 PF11940 Domain of unknown function (DUF3458) Ig-like fold AM378_03610 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AM378_03615 PF00005 ABC transporter AM378_03620 PF00528 Binding-protein-dependent transport system inner membrane component AM378_03625 PF00296 Luciferase-like monooxygenase AM378_03630 PF09084 NMT1/THI5 like AM378_03635 PF03358 NADPH-dependent FMN reductase AM378_03640 PF01180 Dihydroorotate dehydrogenase AM378_03645 PF07126 Cell-division protein ZapC AM378_03650 PF03476 MOSC N-terminal beta barrel domain AM378_03650 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_03650 PF03473 MOSC domain AM378_03655 PF02926 THUMP domain AM378_03655 PF10672 S-adenosylmethionine-dependent methyltransferase AM378_03655 PF01170 Putative RNA methylase family UPF0020 AM378_03660 PF00005 ABC transporter AM378_03660 PF12848 ABC transporter AM378_03660 PF16326 ABC transporter C-terminal domain AM378_03665 PF04403 Paraquat-inducible protein A AM378_03670 PF02470 MlaD protein AM378_03675 PF03886 ABC-type transport auxiliary lipoprotein component AM378_03680 PF04957 Ribosome modulation factor AM378_03685 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_03685 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_03695 PF07977 FabA-like domain AM378_03700 PF05362 Lon protease (S16) C-terminal proteolytic domain AM378_03700 PF13654 AAA domain AM378_03705 PF17414 MatP C-terminal ribbon-helix-helix domain AM378_03705 PF06303 MatP N-terminal domain AM378_03710 PF00691 OmpA family AM378_03710 PF01389 OmpA-like transmembrane domain AM378_03715 PF03846 Cell division inhibitor SulA AM378_03720 PF04994 TfoX C-terminal domain AM378_03720 PF04993 TfoX N-terminal domain AM378_03725 PF12805 FUSC-like inner membrane protein yccS AM378_03730 PF03733 Inner membrane component domain AM378_03735 PF12462 DNA helicase IV / RNA helicase N terminal AM378_03735 PF13361 UvrD-like helicase C-terminal domain AM378_03735 PF00580 UvrD/REP helicase N-terminal domain AM378_03740 PF02142 MGS-like domain AM378_03745 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AM378_03750 PF13380 CoA binding domain AM378_03755 PF08755 Hemimethylated DNA-binding protein YccV like AM378_03760 PF10672 S-adenosylmethionine-dependent methyltransferase AM378_03760 PF17785 PUA-like domain AM378_03770 PF01757 Acyltransferase family AM378_03775 PF00708 Acylphosphatase AM378_03780 PF04358 DsrC like protein AM378_03785 PF01027 Inhibitor of apoptosis-promoting Bax1 AM378_03810 PF00072 Response regulator receiver domain AM378_03810 PF00196 Bacterial regulatory proteins, luxR family AM378_03820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_03820 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_03825 PF13953 PapC C-terminal domain AM378_03825 PF00577 Outer membrane usher protein AM378_03825 PF13954 PapC N-terminal domain AM378_03840 PF03466 LysR substrate binding domain AM378_03840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_03845 PF09278 MerR, DNA binding AM378_03845 PF00376 MerR family regulatory protein AM378_03855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_03860 PF00873 AcrB/AcrD/AcrF family AM378_03865 PF01223 DNA/RNA non-specific endonuclease AM378_03870 PF02386 Cation transport protein AM378_03880 PF03358 NADPH-dependent FMN reductase AM378_03895 PF00324 Amino acid permease AM378_03905 PF09335 SNARE associated Golgi protein AM378_03910 PF07690 Major Facilitator Superfamily AM378_03930 PF00378 Enoyl-CoA hydratase/isomerase AM378_03935 PF07690 Major Facilitator Superfamily AM378_03940 PF00155 Aminotransferase class I and II AM378_03945 PF02803 Thiolase, C-terminal domain AM378_03945 PF00108 Thiolase, N-terminal domain AM378_03950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM378_03950 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM378_03950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM378_03955 PF00196 Bacterial regulatory proteins, luxR family AM378_03955 PF03472 Autoinducer binding domain AM378_03960 PF00582 Universal stress protein family AM378_03970 PF02615 Malate/L-lactate dehydrogenase AM378_03975 PF13520 Amino acid permease AM378_03980 PF00171 Aldehyde dehydrogenase family AM378_03985 PF00701 Dihydrodipicolinate synthetase family AM378_03995 PF05544 Proline racemase AM378_04000 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM378_04000 PF01266 FAD dependent oxidoreductase AM378_04010 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_04010 PF04324 BFD-like [2Fe-2S] binding domain AM378_04025 PF06942 GlpM protein AM378_04030 PF10769 Protein of unknown function (DUF2594) AM378_04035 PF00196 Bacterial regulatory proteins, luxR family AM378_04035 PF00072 Response regulator receiver domain AM378_04040 PF01541 GIY-YIG catalytic domain AM378_04040 PF02151 UvrB/uvrC motif AM378_04040 PF08459 UvrC Helix-hairpin-helix N-terminal AM378_04045 PF01066 CDP-alcohol phosphatidyltransferase AM378_04065 PF03605 Anaerobic c4-dicarboxylate membrane transporter AM378_04095 PF00083 Sugar (and other) transporter AM378_04095 PF08946 Osmosensory transporter coiled coil AM378_04100 PF02321 Outer membrane efflux protein AM378_04105 PF00005 ABC transporter AM378_04105 PF12704 MacB-like periplasmic core domain AM378_04105 PF02687 FtsX-like permease family AM378_04110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_04130 PF10777 Inner membrane protein YlaC AM378_04135 PF02080 TrkA-C domain AM378_04135 PF03471 Transporter associated domain AM378_04135 PF00999 Sodium/hydrogen exchanger family AM378_04150 PF01757 Acyltransferase family AM378_04155 PF04349 Periplasmic glucan biosynthesis protein, MdoG AM378_04160 PF00535 Glycosyl transferase family 2 AM378_04165 PF07119 Protein of unknown function (DUF1375) AM378_04175 PF13984 MsyB protein AM378_04180 PF08502 LeuA allosteric (dimerisation) domain AM378_04180 PF00682 HMGL-like AM378_04185 PF12833 Helix-turn-helix domain AM378_04185 PF02311 AraC-like ligand binding domain AM378_04195 PF04143 Sulphur transport AM378_04205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_04210 PF00854 POT family AM378_04215 PF00083 Sugar (and other) transporter AM378_04215 PF07690 Major Facilitator Superfamily AM378_04225 PF03279 Bacterial lipid A biosynthesis acyltransferase AM378_04240 PF04264 YceI-like domain AM378_04245 PF01292 Prokaryotic cytochrome b561 AM378_04250 PF01594 AI-2E family transporter AM378_04270 PF01266 FAD dependent oxidoreductase AM378_04275 PF13991 BssS protein family AM378_04285 PF06183 DinI-like family AM378_04290 PF01979 Amidohydrolase family AM378_04295 PF03992 Antibiotic biosynthesis monooxygenase AM378_04300 PF00575 S1 RNA binding domain AM378_04300 PF10150 Ribonuclease E/G family AM378_04300 PF12111 Polyribonucleotide phosphorylase C terminal AM378_04310 PF00849 RNA pseudouridylate synthase AM378_04310 PF01479 S4 domain AM378_04315 PF02545 Maf-like protein AM378_04320 PF02620 Large ribosomal RNA subunit accumulation protein YceD AM378_04325 PF01783 Ribosomal L32p protein family AM378_04330 PF02504 Fatty acid synthesis protein AM378_04335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM378_04335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM378_04340 PF00698 Acyl transferase domain AM378_04350 PF00550 Phosphopantetheine attachment site AM378_04355 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_04355 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_04360 PF01063 Amino-transferase class IV AM378_04365 PF02618 YceG-like family AM378_04370 PF02223 Thymidylate kinase AM378_04375 PF09115 DNA polymerase III, delta subunit, C terminal AM378_04380 PF01026 TatD related DNase AM378_04385 PF02378 Phosphotransferase system, EIIC AM378_04385 PF00367 phosphotransferase system, EIIB AM378_04395 PF01325 Iron dependent repressor, N-terminal DNA binding domain AM378_04395 PF02742 Iron dependent repressor, metal binding and dimerisation domain AM378_04400 PF01566 Natural resistance-associated macrophage protein AM378_04410 PF01638 HxlR-like helix-turn-helix AM378_04420 PF01230 HIT domain AM378_04425 PF07233 Protein of unknown function (DUF1425) AM378_04430 PF13036 Peptidoglycan-synthase activator LpoB AM378_04430 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AM378_04435 PF01636 Phosphotransferase enzyme family AM378_04440 PF00933 Glycosyl hydrolase family 3 N terminal domain AM378_04445 PF05728 Uncharacterised protein family (UPF0227) AM378_04450 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_04455 PF05433 Glycine zipper 2TM domain AM378_04465 PF01797 Transposase IS200 like AM378_04475 PF00873 AcrB/AcrD/AcrF family AM378_04480 PF13533 Biotin-lipoyl like AM378_04485 PF06445 GyrI-like small molecule binding domain AM378_04485 PF12833 Helix-turn-helix domain AM378_04505 PF00854 POT family AM378_04510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM378_04515 PF02811 PHP domain AM378_04520 PF02613 Nitrate reductase delta subunit AM378_04525 PF04391 Protein of unknown function (DUF533) AM378_04530 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM378_04530 PF00326 Prolyl oligopeptidase family AM378_04535 PF00929 Exonuclease AM378_04540 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM378_04545 PF00561 alpha/beta hydrolase fold AM378_04550 PF06440 DNA polymerase III, theta subunit AM378_04555 PF00210 Ferritin-like domain AM378_04560 PF04234 CopC domain AM378_04565 PF05425 Copper resistance protein D AM378_04570 PF10709 Protein of unknown function (DUF2511) AM378_04590 PF12241 Trans-2-enoyl-CoA reductase catalytic region AM378_04590 PF07055 Enoyl reductase FAD binding domain AM378_04590 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AM378_04610 PF00072 Response regulator receiver domain AM378_04615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_04615 PF00989 PAS fold AM378_04615 PF17203 Single cache domain 3 AM378_04615 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AM378_04625 PF13407 Periplasmic binding protein domain AM378_04630 PF00005 ABC transporter AM378_04635 PF02653 Branched-chain amino acid transport system / permease component AM378_04640 PF13407 Periplasmic binding protein domain AM378_04650 PF01266 FAD dependent oxidoreductase AM378_04655 PF00392 Bacterial regulatory proteins, gntR family AM378_04655 PF07729 FCD domain AM378_04665 PF16868 NMT1-like family AM378_04670 PF03180 NLPA lipoprotein AM378_04680 PF00582 Universal stress protein family AM378_04685 PF01204 Trehalase AM378_04695 PF00356 Bacterial regulatory proteins, lacI family AM378_04700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM378_04700 PF02929 Beta galactosidase small chain AM378_04700 PF00703 Glycosyl hydrolases family 2 AM378_04700 PF16353 Domain of unknown function(DUF4981) AM378_04700 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM378_04705 PF04074 YhcH/YjgK/YiaL AM378_04710 PF13520 Amino acid permease AM378_04715 PF01022 Bacterial regulatory protein, arsR family AM378_04725 PF00574 Clp protease AM378_04735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_04745 PF00577 Outer membrane usher protein AM378_04745 PF13953 PapC C-terminal domain AM378_04745 PF13954 PapC N-terminal domain AM378_04750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_04750 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_04790 PF01926 50S ribosome-binding GTPase AM378_04790 PF06071 Protein of unknown function (DUF933) AM378_04795 PF00916 Sulfate permease family AM378_04795 PF01740 STAS domain AM378_04800 PF01195 Peptidyl-tRNA hydrolase AM378_04805 PF10762 Protein of unknown function (DUF2583) AM378_04810 PF14572 Phosphoribosyl synthetase-associated domain AM378_04810 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AM378_04815 PF08544 GHMP kinases C terminal AM378_04815 PF00288 GHMP kinases N terminal domain AM378_04820 PF03550 Outer membrane lipoprotein LolB AM378_04825 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AM378_04825 PF01488 Shikimate / quinate 5-dehydrogenase AM378_04825 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AM378_04830 PF00472 RF-1 domain AM378_04830 PF03462 PCRF domain AM378_04835 PF13847 Methyltransferase domain AM378_04835 PF17827 PrmC N-terminal domain AM378_04840 PF04247 Invasion gene expression up-regulator, SirB AM378_04845 PF13369 Transglutaminase-like superfamily AM378_04850 PF00793 DAHP synthetase I family AM378_04855 PF01740 STAS domain AM378_04855 PF00916 Sulfate permease family AM378_04860 PF03928 Haem-degrading AM378_04865 PF02559 CarD-like/TRCF domain AM378_04865 PF00270 DEAD/DEAH box helicase AM378_04865 PF00271 Helicase conserved C-terminal domain AM378_04865 PF17757 UvrB interaction domain AM378_04865 PF03461 TRCF domain AM378_04875 PF02687 FtsX-like permease family AM378_04875 PF12704 MacB-like periplasmic core domain AM378_04880 PF00005 ABC transporter AM378_04885 PF02687 FtsX-like permease family AM378_04885 PF12704 MacB-like periplasmic core domain AM378_04890 PF00480 ROK family AM378_04895 PF02146 Sir2 family AM378_04900 PF13416 Bacterial extracellular solute-binding protein AM378_04910 PF02056 Family 4 glycosyl hydrolase AM378_04910 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM378_04915 PF02378 Phosphotransferase system, EIIC AM378_04915 PF00367 phosphotransferase system, EIIB AM378_04920 PF00528 Binding-protein-dependent transport system inner membrane component AM378_04925 PF00528 Binding-protein-dependent transport system inner membrane component AM378_04930 PF08402 TOBE domain AM378_04930 PF00005 ABC transporter AM378_04935 PF01546 Peptidase family M20/M25/M40 AM378_04935 PF07687 Peptidase dimerisation domain AM378_04955 PF02615 Malate/L-lactate dehydrogenase AM378_04960 PF08007 Cupin superfamily protein AM378_04965 PF08918 PhoQ Sensor AM378_04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_04970 PF00486 Transcriptional regulatory protein, C terminal AM378_04970 PF00072 Response regulator receiver domain AM378_04975 PF03747 ADP-ribosylglycohydrolase AM378_04980 PF07702 UTRA domain AM378_04980 PF00392 Bacterial regulatory proteins, gntR family AM378_04985 PF00155 Aminotransferase class I and II AM378_04985 PF00392 Bacterial regulatory proteins, gntR family AM378_04995 PF13302 Acetyltransferase (GNAT) domain AM378_05000 PF08328 Adenylosuccinate lyase C-terminal AM378_05000 PF00206 Lyase AM378_05005 PF04356 Protein of unknown function (DUF489) AM378_05010 PF02705 K+ potassium transporter AM378_05020 PF00293 NUDIX domain AM378_05030 PF00849 RNA pseudouridylate synthase AM378_05035 PF00180 Isocitrate/isopropylmalate dehydrogenase AM378_05040 PF00582 Universal stress protein family AM378_05045 PF06004 Bacterial protein of unknown function (DUF903) AM378_05050 PF06004 Bacterial protein of unknown function (DUF903) AM378_05055 PF06519 TolA C-terminal AM378_05070 PF01594 AI-2E family transporter AM378_05105 PF13599 Pentapeptide repeats (9 copies) AM378_05115 PF00313 'Cold-shock' DNA-binding domain AM378_05125 PF00857 Isochorismatase family AM378_05130 PF00582 Universal stress protein family AM378_05140 PF01266 FAD dependent oxidoreductase AM378_05145 PF00171 Aldehyde dehydrogenase family AM378_05150 PF07883 Cupin domain AM378_05150 PF01381 Helix-turn-helix AM378_05155 PF07722 Peptidase C26 AM378_05160 PF00120 Glutamine synthetase, catalytic domain AM378_05170 PF00324 Amino acid permease AM378_05175 PF00892 EamA-like transporter family AM378_05185 PF03502 Nucleoside-specific channel-forming protein, Tsx AM378_05200 PF01817 Chorismate mutase type II AM378_05215 PF01979 Amidohydrolase family AM378_05220 PF00392 Bacterial regulatory proteins, gntR family AM378_05220 PF07702 UTRA domain AM378_05225 PF01979 Amidohydrolase family AM378_05230 PF05962 HutD AM378_05235 PF00356 Bacterial regulatory proteins, lacI family AM378_05235 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM378_05240 PF00251 Glycosyl hydrolases family 32 N-terminal domain AM378_05240 PF08244 Glycosyl hydrolases family 32 C terminal AM378_05245 PF01306 LacY proton/sugar symporter AM378_05250 PF00083 Sugar (and other) transporter AM378_05255 PF01293 Phosphoenolpyruvate carboxykinase AM378_05260 PF03390 2-hydroxycarboxylate transporter family AM378_05285 PF07351 Protein of unknown function (DUF1480) AM378_05320 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AM378_05320 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AM378_05320 PF01189 16S rRNA methyltransferase RsmB/F AM378_05325 PF02470 MlaD protein AM378_05330 PF04403 Paraquat-inducible protein A AM378_05335 PF13185 GAF domain AM378_05340 PF17516 ProQ C-terminal domain AM378_05340 PF04352 ProQ/FINO family AM378_05345 PF11818 C-terminal domain of tail specific protease (DUF3340) AM378_05345 PF00595 PDZ domain AM378_05345 PF03572 Peptidase family S41 AM378_05345 PF17804 Tail specific protease N-terminal domain AM378_05350 PF01435 Peptidase family M48 AM378_05360 PF07690 Major Facilitator Superfamily AM378_05365 PF01614 Bacterial transcriptional regulator AM378_05365 PF09339 IclR helix-turn-helix domain AM378_05370 PF00528 Binding-protein-dependent transport system inner membrane component AM378_05375 PF00528 Binding-protein-dependent transport system inner membrane component AM378_05380 PF08402 TOBE domain AM378_05380 PF00005 ABC transporter AM378_05385 PF01547 Bacterial extracellular solute-binding protein AM378_05390 PF07702 UTRA domain AM378_05390 PF00392 Bacterial regulatory proteins, gntR family AM378_05395 PF00266 Aminotransferase class-V AM378_05410 PF04307 LexA-binding, inner membrane-associated putative hydrolase AM378_05415 PF13419 Haloacid dehalogenase-like hydrolase AM378_05425 PF14002 YniB-like protein AM378_05435 PF00950 ABC 3 transport family AM378_05440 PF00950 ABC 3 transport family AM378_05445 PF00005 ABC transporter AM378_05450 PF01297 Zinc-uptake complex component A periplasmic AM378_05455 PF11080 Endoribonuclease GhoS AM378_05460 PF01464 Transglycosylase SLT domain AM378_05465 PF13618 Gluconate 2-dehydrogenase subunit 3 AM378_05470 PF00732 GMC oxidoreductase AM378_05470 PF05199 GMC oxidoreductase AM378_05475 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_05475 PF00034 Cytochrome c AM378_05490 PF01914 MarC family integral membrane protein AM378_05505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM378_05505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM378_05505 PF02824 TGS domain AM378_05505 PF03129 Anticodon binding domain AM378_05510 PF05198 Translation initiation factor IF-3, N-terminal domain AM378_05510 PF00707 Translation initiation factor IF-3, C-terminal domain AM378_05515 PF01632 Ribosomal protein L35 AM378_05520 PF00453 Ribosomal protein L20 AM378_05525 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AM378_05525 PF01409 tRNA synthetases class II core domain (F) AM378_05530 PF03147 Ferredoxin-fold anticodon binding domain AM378_05530 PF01588 Putative tRNA binding domain AM378_05530 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AM378_05530 PF03483 B3/4 domain AM378_05530 PF03484 tRNA synthetase B5 domain AM378_05535 PF00216 Bacterial DNA-binding protein AM378_05545 PF01032 FecCD transport family AM378_05550 PF00255 Glutathione peroxidase AM378_05555 PF00005 ABC transporter AM378_05560 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM378_05565 PF00535 Glycosyl transferase family 2 AM378_05570 PF00551 Formyl transferase AM378_05570 PF01370 NAD dependent epimerase/dehydratase family AM378_05570 PF02911 Formyl transferase, C-terminal domain AM378_05575 PF01522 Polysaccharide deacetylase AM378_05580 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AM378_05585 PF00892 EamA-like transporter family AM378_05595 PF00877 NlpC/P60 family AM378_05600 PF03099 Biotin/lipoate A/B protein ligase family AM378_05600 PF10437 Bacterial lipoate protein ligase C-terminus AM378_05610 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AM378_05615 PF00005 ABC transporter AM378_05620 PF01032 FecCD transport family AM378_05625 PF01497 Periplasmic binding protein AM378_05630 PF05171 Haemin-degrading HemS.ChuX domain AM378_05635 PF07715 TonB-dependent Receptor Plug Domain AM378_05635 PF00593 TonB dependent receptor AM378_05640 PF10636 Hemin uptake protein hemP AM378_05645 PF00255 Glutathione peroxidase AM378_05650 PF00793 DAHP synthetase I family AM378_05655 PF03618 Kinase/pyrophosphorylase AM378_05665 PF00391 PEP-utilising enzyme, mobile domain AM378_05665 PF02896 PEP-utilising enzyme, TIM barrel domain AM378_05665 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AM378_05675 PF01594 AI-2E family transporter AM378_05680 PF02913 FAD linked oxidases, C-terminal domain AM378_05680 PF13183 4Fe-4S dicluster domain AM378_05680 PF01565 FAD binding domain AM378_05685 PF03061 Thioesterase superfamily AM378_05695 PF01521 Iron-sulphur cluster biosynthesis AM378_05700 PF01458 Uncharacterized protein family (UPF0051) AM378_05705 PF00005 ABC transporter AM378_05710 PF01458 Uncharacterized protein family (UPF0051) AM378_05715 PF00266 Aminotransferase class-V AM378_05720 PF02657 Fe-S metabolism associated domain AM378_05725 PF17969 L,D-transpeptidase C-terminal domain AM378_05725 PF01476 LysM domain AM378_05725 PF03734 L,D-transpeptidase catalytic domain AM378_05730 PF04728 Lipoprotein leucine-zipper AM378_05735 PF02887 Pyruvate kinase, alpha/beta domain AM378_05735 PF00224 Pyruvate kinase, barrel domain AM378_05760 PF01554 MatE AM378_05765 PF00677 Lumazine binding domain AM378_05780 PF07690 Major Facilitator Superfamily AM378_05785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_05785 PF03466 LysR substrate binding domain AM378_05790 PF00356 Bacterial regulatory proteins, lacI family AM378_05800 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM378_05800 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM378_05805 PF00877 NlpC/P60 family AM378_05810 PF00462 Glutaredoxin AM378_05815 PF00929 Exonuclease AM378_05820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_05825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM378_05830 PF00440 Bacterial regulatory proteins, tetR family AM378_05830 PF16925 Tetracyclin repressor-like, C-terminal domain AM378_05835 PF00884 Sulfatase AM378_05835 PF08019 Phosphoethanolamine transferase EptA/EptB AM378_05845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_05845 PF03466 LysR substrate binding domain AM378_05850 PF06945 Protein of unknown function (DUF1289) AM378_05855 PF00248 Aldo/keto reductase family AM378_05860 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM378_05865 PF00080 Copper/zinc superoxide dismutase (SODC) AM378_05870 PF04632 Fusaric acid resistance protein family AM378_05875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_05875 PF00529 HlyD membrane-fusion protein of T1SS AM378_05880 PF07869 Protein of unknown function (DUF1656) AM378_05885 PF01047 MarR family AM378_05890 PF05433 Glycine zipper 2TM domain AM378_05895 PF03702 Anhydro-N-acetylmuramic acid kinase AM378_05905 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AM378_05905 PF01243 Pyridoxamine 5'-phosphate oxidase AM378_05910 PF01479 S4 domain AM378_05910 PF00579 tRNA synthetases class I (W and Y) AM378_05920 PF08543 Phosphomethylpyrimidine kinase AM378_05925 PF02798 Glutathione S-transferase, N-terminal domain AM378_05925 PF00043 Glutathione S-transferase, C-terminal domain AM378_05930 PF00701 Dihydrodipicolinate synthetase family AM378_05935 PF11656 YjbD family (DUF3811) AM378_05940 PF01966 HD domain AM378_05960 PF01042 Endoribonuclease L-PSP AM378_05965 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AM378_05975 PF03594 Benzoate membrane transport protein AM378_05980 PF07883 Cupin domain AM378_05980 PF01381 Helix-turn-helix AM378_05985 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM378_05985 PF00326 Prolyl oligopeptidase family AM378_05990 PF00854 POT family AM378_05995 PF00730 HhH-GPD superfamily base excision DNA repair protein AM378_05995 PF00633 Helix-hairpin-helix motif AM378_05995 PF10576 Iron-sulfur binding domain of endonuclease III AM378_06000 PF02508 Rnf-Nqr subunit, membrane protein AM378_06005 PF04205 FMN-binding domain AM378_06010 PF03116 NQR2, RnfD, RnfE family AM378_06015 PF12833 Helix-turn-helix domain AM378_06015 PF06445 GyrI-like small molecule binding domain AM378_06020 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM378_06020 PF12838 4Fe-4S dicluster domain AM378_06020 PF13375 RnfC Barrel sandwich hybrid domain AM378_06020 PF10531 SLBB domain AM378_06025 PF04060 Putative Fe-S cluster AM378_06030 PF02508 Rnf-Nqr subunit, membrane protein AM378_06035 PF10754 Protein of unknown function (DUF2569) AM378_06040 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM378_06040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_06045 PF13593 SBF-like CPA transporter family (DUF4137) AM378_06055 PF00962 Adenosine/AMP deaminase AM378_06060 PF00455 DeoR C terminal sensor domain AM378_06060 PF08220 DeoR-like helix-turn-helix domain AM378_06065 PF00293 NUDIX domain AM378_06075 PF00155 Aminotransferase class I and II AM378_06080 PF00367 phosphotransferase system, EIIB AM378_06080 PF02378 Phosphotransferase system, EIIC AM378_06085 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM378_06085 PF00356 Bacterial regulatory proteins, lacI family AM378_06090 PF03466 LysR substrate binding domain AM378_06090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06095 PF00144 Beta-lactamase AM378_06100 PF03466 LysR substrate binding domain AM378_06100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06105 PF00144 Beta-lactamase AM378_06110 PF06097 Bacterial protein of unknown function (DUF945) AM378_06115 PF01238 Phosphomannose isomerase type I AM378_06125 PF10415 Fumarase C C-terminus AM378_06125 PF00206 Lyase AM378_06130 PF08279 HTH domain AM378_06130 PF13280 WYL domain AM378_06140 PF05472 DNA replication terminus site-binding protein (Ter protein) AM378_06145 PF00933 Glycosyl hydrolase family 3 N terminal domain AM378_06145 PF01915 Glycosyl hydrolase family 3 C-terminal domain AM378_06155 PF07690 Major Facilitator Superfamily AM378_06160 PF03466 LysR substrate binding domain AM378_06160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06165 PF00480 ROK family AM378_06180 PF09278 MerR, DNA binding AM378_06180 PF00376 MerR family regulatory protein AM378_06185 PF00654 Voltage gated chloride channel AM378_06190 PF00005 ABC transporter AM378_06190 PF00571 CBS domain AM378_06195 PF00528 Binding-protein-dependent transport system inner membrane component AM378_06200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM378_06205 PF00528 Binding-protein-dependent transport system inner membrane component AM378_06210 PF07690 Major Facilitator Superfamily AM378_06215 PF06649 Protein of unknown function (DUF1161) AM378_06220 PF06932 Protein of unknown function (DUF1283) AM378_06225 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AM378_06230 PF00106 short chain dehydrogenase AM378_06240 PF00593 TonB dependent receptor AM378_06240 PF07660 Secretin and TonB N terminus short domain AM378_06240 PF07715 TonB-dependent Receptor Plug Domain AM378_06245 PF16220 Domain of unknown function (DUF4880) AM378_06245 PF04773 FecR protein AM378_06250 PF08281 Sigma-70, region 4 AM378_06250 PF04542 Sigma-70 region 2 AM378_06255 PF01979 Amidohydrolase family AM378_06260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_06260 PF00529 HlyD membrane-fusion protein of T1SS AM378_06265 PF00005 ABC transporter AM378_06265 PF00664 ABC transporter transmembrane region AM378_06265 PF03412 Peptidase C39 family AM378_06280 PF00668 Condensation domain AM378_06280 PF00550 Phosphopantetheine attachment site AM378_06280 PF00501 AMP-binding enzyme AM378_06280 PF13193 AMP-binding enzyme C-terminal domain AM378_06285 PF00550 Phosphopantetheine attachment site AM378_06285 PF00668 Condensation domain AM378_06285 PF13193 AMP-binding enzyme C-terminal domain AM378_06285 PF00501 AMP-binding enzyme AM378_06305 PF01432 Peptidase family M3 AM378_06310 PF07690 Major Facilitator Superfamily AM378_06315 PF00857 Isochorismatase family AM378_06320 PF17645 Arylmalonate decarboxylase AM378_06325 PF00561 alpha/beta hydrolase fold AM378_06330 PF01494 FAD binding domain AM378_06340 PF12802 MarR family AM378_06345 PF01799 [2Fe-2S] binding domain AM378_06345 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_06350 PF00034 Cytochrome c AM378_06350 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_06350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_06355 PF00561 alpha/beta hydrolase fold AM378_06360 PF03466 LysR substrate binding domain AM378_06360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06385 PF00529 HlyD membrane-fusion protein of T1SS AM378_06385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_06390 PF00664 ABC transporter transmembrane region AM378_06390 PF00005 ABC transporter AM378_06390 PF03412 Peptidase C39 family AM378_06395 PF03576 Peptidase family S58 AM378_06405 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_06410 PF01799 [2Fe-2S] binding domain AM378_06410 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_06415 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_06415 PF00034 Cytochrome c AM378_06420 PF01810 LysE type translocator AM378_06425 PF03466 LysR substrate binding domain AM378_06425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06430 PF00106 short chain dehydrogenase AM378_06435 PF00753 Metallo-beta-lactamase superfamily AM378_06445 PF01810 LysE type translocator AM378_06455 PF00171 Aldehyde dehydrogenase family AM378_06470 PF00962 Adenosine/AMP deaminase AM378_06475 PF01156 Inosine-uridine preferring nucleoside hydrolase AM378_06485 PF00190 Cupin AM378_06490 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM378_06490 PF00367 phosphotransferase system, EIIB AM378_06490 PF02378 Phosphotransferase system, EIIC AM378_06495 PF00232 Glycosyl hydrolase family 1 AM378_06500 PF03123 CAT RNA binding domain AM378_06500 PF00874 PRD domain AM378_06505 PF03466 LysR substrate binding domain AM378_06505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06520 PF02974 Protease inhibitor Inh AM378_06525 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM378_06525 PF00413 Matrixin AM378_06525 PF08548 Peptidase M10 serralysin C terminal AM378_06535 PF00561 alpha/beta hydrolase fold AM378_06570 PF02567 Phenazine biosynthesis-like protein AM378_06580 PF12833 Helix-turn-helix domain AM378_06600 PF07690 Major Facilitator Superfamily AM378_06610 PF15940 Family of unknown function AM378_06615 PF00905 Penicillin binding protein transpeptidase domain AM378_06615 PF03717 Penicillin-binding Protein dimerisation domain AM378_06620 PF03717 Penicillin-binding Protein dimerisation domain AM378_06620 PF00905 Penicillin binding protein transpeptidase domain AM378_06635 PF00672 HAMP domain AM378_06635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_06635 PF02203 Tar ligand binding domain homologue AM378_06640 PF05433 Glycine zipper 2TM domain AM378_06655 PF10766 Multidrug efflux pump-associated protein AcrZ AM378_06660 PF03466 LysR substrate binding domain AM378_06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06665 PF00144 Beta-lactamase AM378_06670 PF07690 Major Facilitator Superfamily AM378_06680 PF08220 DeoR-like helix-turn-helix domain AM378_06680 PF00455 DeoR C terminal sensor domain AM378_06685 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM378_06685 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_06690 PF07690 Major Facilitator Superfamily AM378_06715 PF07977 FabA-like domain AM378_06720 PF03350 Uncharacterized protein family, UPF0114 AM378_06735 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AM378_06735 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_06735 PF10518 TAT (twin-arginine translocation) pathway signal sequence AM378_06740 PF01925 Sulfite exporter TauE/SafE AM378_06745 PF00753 Metallo-beta-lactamase superfamily AM378_06745 PF04273 Putative phosphatase (DUF442) AM378_06750 PF00107 Zinc-binding dehydrogenase AM378_06750 PF08240 Alcohol dehydrogenase GroES-like domain AM378_06755 PF00171 Aldehyde dehydrogenase family AM378_06760 PF01590 GAF domain AM378_06760 PF02954 Bacterial regulatory protein, Fis family AM378_06760 PF00158 Sigma-54 interaction domain AM378_06765 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_06770 PF07690 Major Facilitator Superfamily AM378_06775 PF00563 EAL domain AM378_06775 PF00990 Diguanylate cyclase, GGDEF domain AM378_06775 PF03707 Bacterial signalling protein N terminal repeat AM378_06780 PF08548 Peptidase M10 serralysin C terminal AM378_06780 PF00413 Matrixin AM378_06780 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM378_06785 PF02974 Protease inhibitor Inh AM378_06795 PF07729 FCD domain AM378_06795 PF00392 Bacterial regulatory proteins, gntR family AM378_06805 PF12697 Alpha/beta hydrolase family AM378_06810 PF01613 Flavin reductase like domain AM378_06815 PF00296 Luciferase-like monooxygenase AM378_06820 PF00171 Aldehyde dehydrogenase family AM378_06825 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AM378_06830 PF00675 Insulinase (Peptidase family M16) AM378_06840 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AM378_06845 PF03070 TENA/THI-4/PQQC family AM378_06850 PF12706 Beta-lactamase superfamily domain AM378_06855 PF08042 PqqA family AM378_06860 PF01244 Membrane dipeptidase (Peptidase family M19) AM378_06865 PF11008 Protein of unknown function (DUF2846) AM378_06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06870 PF03466 LysR substrate binding domain AM378_06875 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM378_06880 PF00202 Aminotransferase class-III AM378_06885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM378_06885 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_06890 PF13411 MerR HTH family regulatory protein AM378_06895 PF00113 Enolase, C-terminal TIM barrel domain AM378_06895 PF03952 Enolase, N-terminal domain AM378_06905 PF01368 DHH family AM378_06905 PF02833 DHHA2 domain AM378_06910 PF00563 EAL domain AM378_06910 PF00990 Diguanylate cyclase, GGDEF domain AM378_06910 PF05231 MASE1 AM378_06910 PF08448 PAS fold AM378_06910 PF13426 PAS domain AM378_06910 PF08447 PAS fold AM378_06935 PF13091 PLD-like domain AM378_06940 PF13460 NAD(P)H-binding AM378_06945 PF03466 LysR substrate binding domain AM378_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_06950 PF13533 Biotin-lipoyl like AM378_06970 PF00106 short chain dehydrogenase AM378_06975 PF00106 short chain dehydrogenase AM378_06980 PF12706 Beta-lactamase superfamily domain AM378_06985 PF12833 Helix-turn-helix domain AM378_06985 PF12852 Cupin AM378_06990 PF01261 Xylose isomerase-like TIM barrel AM378_06995 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM378_06995 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_07000 PF13407 Periplasmic binding protein domain AM378_07005 PF00356 Bacterial regulatory proteins, lacI family AM378_07020 PF04229 GrpB protein AM378_07020 PF13673 Acetyltransferase (GNAT) domain AM378_07030 PF04073 Aminoacyl-tRNA editing domain AM378_07040 PF07995 Glucose / Sorbosone dehydrogenase AM378_07060 PF02525 Flavodoxin-like fold AM378_07065 PF01638 HxlR-like helix-turn-helix AM378_07070 PF05977 Transmembrane secretion effector AM378_07075 PF00975 Thioesterase domain AM378_07075 PF00550 Phosphopantetheine attachment site AM378_07075 PF00668 Condensation domain AM378_07075 PF13193 AMP-binding enzyme C-terminal domain AM378_07075 PF00501 AMP-binding enzyme AM378_07080 PF03621 MbtH-like protein AM378_07085 PF00756 Putative esterase AM378_07085 PF11806 Domain of unknown function (DUF3327) AM378_07090 PF07715 TonB-dependent Receptor Plug Domain AM378_07090 PF00593 TonB dependent receptor AM378_07095 PF08348 YheO-like PAS domain AM378_07095 PF13309 HTH domain AM378_07100 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM378_07100 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM378_07105 PF13193 AMP-binding enzyme C-terminal domain AM378_07105 PF00501 AMP-binding enzyme AM378_07110 PF01965 DJ-1/PfpI family AM378_07120 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AM378_07120 PF02321 Outer membrane efflux protein AM378_07125 PF00873 AcrB/AcrD/AcrF family AM378_07130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_07130 PF00529 HlyD membrane-fusion protein of T1SS AM378_07140 PF04371 Porphyromonas-type peptidyl-arginine deiminase AM378_07145 PF03466 LysR substrate binding domain AM378_07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_07160 PF01381 Helix-turn-helix AM378_07160 PF08671 Anti-repressor SinI AM378_07170 PF00881 Nitroreductase family AM378_07175 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_07175 PF00034 Cytochrome c AM378_07175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_07180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_07180 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_07180 PF00034 Cytochrome c AM378_07185 PF01799 [2Fe-2S] binding domain AM378_07185 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_07190 PF01380 SIS domain AM378_07190 PF01418 Helix-turn-helix domain, rpiR family AM378_07195 PF00232 Glycosyl hydrolase family 1 AM378_07200 PF01494 FAD binding domain AM378_07205 PF07690 Major Facilitator Superfamily AM378_07210 PF00291 Pyridoxal-phosphate dependent enzyme AM378_07220 PF07237 Protein of unknown function (DUF1428) AM378_07225 PF00990 Diguanylate cyclase, GGDEF domain AM378_07250 PF00171 Aldehyde dehydrogenase family AM378_07255 PF00701 Dihydrodipicolinate synthetase family AM378_07260 PF00892 EamA-like transporter family AM378_07265 PF00083 Sugar (and other) transporter AM378_07280 PF00924 Mechanosensitive ion channel AM378_07280 PF12795 Mechanosensitive ion channel porin domain AM378_07280 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM378_07285 PF00005 ABC transporter AM378_07285 PF12848 ABC transporter AM378_07290 PF13977 BetI-type transcriptional repressor, C-terminal AM378_07290 PF00440 Bacterial regulatory proteins, tetR family AM378_07295 PF00873 AcrB/AcrD/AcrF family AM378_07300 PF00459 Inositol monophosphatase family AM378_07305 PF01545 Cation efflux family AM378_07305 PF16916 Dimerisation domain of Zinc Transporter AM378_07315 PF00571 CBS domain AM378_07315 PF01769 Divalent cation transporter AM378_07315 PF03448 MgtE intracellular N domain AM378_07320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_07325 PF00561 alpha/beta hydrolase fold AM378_07340 PF00892 EamA-like transporter family AM378_07350 PF00171 Aldehyde dehydrogenase family AM378_07355 PF07859 alpha/beta hydrolase fold AM378_07360 PF00561 alpha/beta hydrolase fold AM378_07375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_07375 PF03466 LysR substrate binding domain AM378_07390 PF03466 LysR substrate binding domain AM378_07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_07395 PF02653 Branched-chain amino acid transport system / permease component AM378_07400 PF02653 Branched-chain amino acid transport system / permease component AM378_07400 PF11862 Domain of unknown function (DUF3382) AM378_07405 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM378_07405 PF00005 ABC transporter AM378_07410 PF00005 ABC transporter AM378_07415 PF13458 Periplasmic binding protein AM378_07425 PF07687 Peptidase dimerisation domain AM378_07425 PF01546 Peptidase family M20/M25/M40 AM378_07445 PF01384 Phosphate transporter family AM378_07450 PF03976 Polyphosphate kinase 2 (PPK2) AM378_07455 PF00293 NUDIX domain AM378_07460 PF00768 D-alanyl-D-alanine carboxypeptidase AM378_07465 PF00296 Luciferase-like monooxygenase AM378_07470 PF00155 Aminotransferase class I and II AM378_07470 PF00392 Bacterial regulatory proteins, gntR family AM378_07480 PF00117 Glutamine amidotransferase class-I AM378_07485 PF08543 Phosphomethylpyrimidine kinase AM378_07490 PF07317 Flagellar regulator YcgR AM378_07490 PF07238 PilZ domain AM378_07505 PF01380 SIS domain AM378_07510 PF01116 Fructose-bisphosphate aldolase class-II AM378_07520 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM378_07520 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM378_07525 PF13545 Crp-like helix-turn-helix domain AM378_07525 PF00027 Cyclic nucleotide-binding domain AM378_07530 PF00582 Universal stress protein family AM378_07535 PF02233 NAD(P) transhydrogenase beta subunit AM378_07540 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AM378_07540 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AM378_07540 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AM378_07545 PF07338 Protein of unknown function (DUF1471) AM378_07550 PF13520 Amino acid permease AM378_07575 PF00486 Transcriptional regulatory protein, C terminal AM378_07575 PF00072 Response regulator receiver domain AM378_07580 PF00672 HAMP domain AM378_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_07580 PF00512 His Kinase A (phospho-acceptor) domain AM378_07585 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AM378_07590 PF00561 alpha/beta hydrolase fold AM378_07600 PF00089 Trypsin AM378_07605 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AM378_07605 PF04408 Helicase associated domain (HA2) AM378_07605 PF11898 Domain of unknown function (DUF3418) AM378_07605 PF00270 DEAD/DEAH box helicase AM378_07605 PF00271 Helicase conserved C-terminal domain AM378_07610 PF02525 Flavodoxin-like fold AM378_07620 PF07027 Protein of unknown function (DUF1318) AM378_07625 PF13617 YnbE-like lipoprotein AM378_07630 PF11739 Dicarboxylate transport AM378_07645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM378_07645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM378_07650 PF03724 META domain AM378_07655 PF03891 Domain of unknown function (DUF333) AM378_07660 PF00893 Small Multidrug Resistance protein AM378_07665 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AM378_07665 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AM378_07665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_07665 PF10371 Domain of unknown function AM378_07665 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AM378_07670 PF01171 PP-loop family AM378_07680 PF01544 CorA-like Mg2+ transporter protein AM378_07700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_07710 PF00246 Zinc carboxypeptidase AM378_07715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM378_07715 PF13378 Enolase C-terminal domain-like AM378_07720 PF08534 Redoxin AM378_07725 PF18024 Helix-turn-helix domain AM378_07725 PF00158 Sigma-54 interaction domain AM378_07730 PF05128 Domain of unknown function (DUF697) AM378_07735 PF04317 YcjX-like family, DUF463 AM378_07740 PF09584 Phage shock protein PspD (Phageshock_PspD) AM378_07745 PF04024 PspC domain AM378_07750 PF06667 Phage shock protein B AM378_07755 PF04012 PspA/IM30 family AM378_07760 PF02954 Bacterial regulatory protein, Fis family AM378_07760 PF00158 Sigma-54 interaction domain AM378_07765 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM378_07765 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM378_07770 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_07775 PF02649 Type I GTP cyclohydrolase folE2 AM378_07780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_07785 PF00528 Binding-protein-dependent transport system inner membrane component AM378_07790 PF00528 Binding-protein-dependent transport system inner membrane component AM378_07790 PF12911 N-terminal TM domain of oligopeptide transport permease C AM378_07795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_07795 PF00005 ABC transporter AM378_07800 PF00005 ABC transporter AM378_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_07820 PF03466 LysR substrate binding domain AM378_07825 PF00768 D-alanyl-D-alanine carboxypeptidase AM378_07825 PF07943 Penicillin-binding protein 5, C-terminal domain AM378_07830 PF00384 Molybdopterin oxidoreductase AM378_07835 PF03466 LysR substrate binding domain AM378_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_07840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_07845 PF00773 RNB domain AM378_07845 PF08206 Ribonuclease B OB domain AM378_07845 PF00575 S1 RNA binding domain AM378_07850 PF07690 Major Facilitator Superfamily AM378_07855 PF07687 Peptidase dimerisation domain AM378_07855 PF01546 Peptidase family M20/M25/M40 AM378_07860 PF02554 Carbon starvation protein CstA AM378_07860 PF13722 5TM C-terminal transporter carbon starvation CstA AM378_07880 PF05594 Haemagluttinin repeat AM378_07880 PF13332 Hemagglutinin repeat AM378_07880 PF05860 haemagglutination activity domain AM378_07880 PF15526 Novel toxin 21 AM378_07880 PF04829 Pre-toxin domain with VENN motif AM378_07905 PF04829 Pre-toxin domain with VENN motif AM378_07905 PF04829 Pre-toxin domain with VENN motif AM378_07905 PF05860 haemagglutination activity domain AM378_07905 PF13332 Hemagglutinin repeat AM378_07905 PF05860 haemagglutination activity domain AM378_07905 PF13332 Hemagglutinin repeat AM378_07910 PF08479 POTRA domain, ShlB-type AM378_07910 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM378_07910 PF17287 POTRA domain AM378_07915 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM378_07920 PF04055 Radical SAM superfamily AM378_07930 PF08220 DeoR-like helix-turn-helix domain AM378_07930 PF00455 DeoR C terminal sensor domain AM378_07935 PF05433 Glycine zipper 2TM domain AM378_07940 PF01253 Translation initiation factor SUI1 AM378_07945 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM378_07960 PF18073 Rubredoxin metal binding domain AM378_07965 PF06305 Lipopolysaccharide assembly protein A domain AM378_07975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_07975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_07980 PF02653 Branched-chain amino acid transport system / permease component AM378_07985 PF00005 ABC transporter AM378_07995 PF13407 Periplasmic binding protein domain AM378_08005 PF02779 Transketolase, pyrimidine binding domain AM378_08005 PF02780 Transketolase, C-terminal domain AM378_08010 PF00456 Transketolase, thiamine diphosphate binding domain AM378_08015 PF00455 DeoR C terminal sensor domain AM378_08015 PF08220 DeoR-like helix-turn-helix domain AM378_08020 PF01569 PAP2 superfamily AM378_08025 PF00925 GTP cyclohydrolase II AM378_08030 PF00694 Aconitase C-terminal domain AM378_08030 PF00330 Aconitase family (aconitate hydratase) AM378_08035 PF03466 LysR substrate binding domain AM378_08035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_08040 PF08272 Topoisomerase I zinc-ribbon-like AM378_08040 PF01131 DNA topoisomerase AM378_08040 PF01751 Toprim domain AM378_08040 PF01396 Topoisomerase DNA binding C4 zinc finger AM378_08045 PF10692 Protein of unknown function (DUF2498) AM378_08050 PF08496 Peptidase family S49 N-terminal AM378_08050 PF01343 Peptidase family S49 AM378_08055 PF00106 short chain dehydrogenase AM378_08060 PF12557 Cob(I)alamin adenosyltransferase N terminal AM378_08060 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AM378_08065 PF01479 S4 domain AM378_08065 PF00849 RNA pseudouridylate synthase AM378_08070 PF00561 alpha/beta hydrolase fold AM378_08080 PF01300 Telomere recombination AM378_08085 PF02811 PHP domain AM378_08090 PF04715 Anthranilate synthase component I, N terminal region AM378_08090 PF00425 chorismate binding enzyme AM378_08095 PF00117 Glutamine amidotransferase class-I AM378_08100 PF02885 Glycosyl transferase family, helical bundle domain AM378_08100 PF00591 Glycosyl transferase family, a/b domain AM378_08105 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AM378_08105 PF00218 Indole-3-glycerol phosphate synthase AM378_08110 PF00291 Pyridoxal-phosphate dependent enzyme AM378_08115 PF00290 Tryptophan synthase alpha chain AM378_08125 PF03922 OmpW family AM378_08130 PF03692 Putative zinc- or iron-chelating domain AM378_08140 PF01740 STAS domain AM378_08140 PF00916 Sulfate permease family AM378_08145 PF04279 Intracellular septation protein A AM378_08150 PF03061 Thioesterase superfamily AM378_08155 PF03544 Gram-negative bacterial TonB protein C-terminal AM378_08160 PF02677 Epoxyqueuosine reductase QueH AM378_08165 PF03795 YCII-related domain AM378_08175 PF03466 LysR substrate binding domain AM378_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_08185 PF00356 Bacterial regulatory proteins, lacI family AM378_08190 PF07385 D-lyxose isomerase AM378_08200 PF08240 Alcohol dehydrogenase GroES-like domain AM378_08200 PF00107 Zinc-binding dehydrogenase AM378_08205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_08205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_08210 PF00005 ABC transporter AM378_08215 PF02653 Branched-chain amino acid transport system / permease component AM378_08220 PF13407 Periplasmic binding protein domain AM378_08225 PF00440 Bacterial regulatory proteins, tetR family AM378_08230 PF07690 Major Facilitator Superfamily AM378_08235 PF00210 Ferritin-like domain AM378_08245 PF13396 Phospholipase_D-nuclease N-terminal AM378_08245 PF13091 PLD-like domain AM378_08250 PF04269 Protein of unknown function, DUF440 AM378_08255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_08255 PF00005 ABC transporter AM378_08260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_08260 PF00005 ABC transporter AM378_08265 PF12911 N-terminal TM domain of oligopeptide transport permease C AM378_08265 PF00528 Binding-protein-dependent transport system inner membrane component AM378_08270 PF00528 Binding-protein-dependent transport system inner membrane component AM378_08275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_08280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_08285 PF01914 MarC family integral membrane protein AM378_08290 PF00171 Aldehyde dehydrogenase family AM378_08290 PF00465 Iron-containing alcohol dehydrogenase AM378_08295 PF00265 Thymidine kinase AM378_08300 PF00816 H-NS histone family AM378_08305 PF01370 NAD dependent epimerase/dehydratase family AM378_08310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM378_08310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM378_08310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM378_08315 PF00483 Nucleotidyl transferase AM378_08320 PF00072 Response regulator receiver domain AM378_08325 PF01734 Patatin-like phospholipase AM378_08330 PF02810 SEC-C motif AM378_08335 PF01842 ACT domain AM378_08335 PF00551 Formyl transferase AM378_08365 PF03641 Possible lysine decarboxylase AM378_08370 PF03372 Endonuclease/Exonuclease/phosphatase family AM378_08375 PF00293 NUDIX domain AM378_08380 PF07383 Protein of unknown function (DUF1496) AM378_08385 PF01131 DNA topoisomerase AM378_08385 PF01751 Toprim domain AM378_08395 PF02769 AIR synthase related protein, C-terminal domain AM378_08395 PF00586 AIR synthase related protein, N-terminal domain AM378_08400 PF00881 Nitroreductase family AM378_08405 PF01343 Peptidase family S49 AM378_08410 PF00710 Asparaginase, N-terminal AM378_08410 PF17763 Glutaminase/Asparaginase C-terminal domain AM378_08415 PF00857 Isochorismatase family AM378_08420 PF00704 Glycosyl hydrolases family 18 AM378_08420 PF00041 Fibronectin type III domain AM378_08425 PF07023 Protein of unknown function (DUF1315) AM378_08430 PF01641 SelR domain AM378_08440 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM378_08440 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM378_08445 PF01263 Aldose 1-epimerase AM378_08450 PF06629 MltA-interacting protein MipA AM378_08455 PF08298 PrkA AAA domain AM378_08455 PF06798 PrkA serine protein kinase C-terminal domain AM378_08460 PF04285 Protein of unknown function (DUF444) AM378_08480 PF10753 Toxin GhoT_OrtT AM378_08505 PF07690 Major Facilitator Superfamily AM378_08510 PF00842 Alanine racemase, C-terminal domain AM378_08510 PF01168 Alanine racemase, N-terminal domain AM378_08515 PF01266 FAD dependent oxidoreductase AM378_08525 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AM378_08530 PF04293 SpoVR like protein AM378_08535 PF00392 Bacterial regulatory proteins, gntR family AM378_08535 PF07840 FadR C-terminal domain AM378_08540 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AM378_08545 PF02600 Disulfide bond formation protein DsbB AM378_08550 PF03692 Putative zinc- or iron-chelating domain AM378_08555 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM378_08560 PF13406 Transglycosylase SLT domain AM378_08565 PF05166 YcgL domain AM378_08570 PF03775 Septum formation inhibitor MinC, C-terminal domain AM378_08570 PF05209 Septum formation inhibitor MinC, N-terminal domain AM378_08575 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AM378_08580 PF03776 Septum formation topological specificity factor MinE AM378_08585 PF01612 3'-5' exonuclease AM378_08585 PF00570 HRDC domain AM378_08590 PF00501 AMP-binding enzyme AM378_08590 PF13193 AMP-binding enzyme C-terminal domain AM378_08595 PF03843 Outer membrane lipoprotein Slp family AM378_08600 PF00814 Glycoprotease family AM378_08605 PF04851 Type III restriction enzyme, res subunit AM378_08605 PF13307 Helicase C-terminal domain AM378_08610 PF01042 Endoribonuclease L-PSP AM378_08615 PF00893 Small Multidrug Resistance protein AM378_08620 PF00893 Small Multidrug Resistance protein AM378_08625 PF01081 KDPG and KHG aldolase AM378_08630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AM378_08630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AM378_08635 PF01418 Helix-turn-helix domain, rpiR family AM378_08635 PF01380 SIS domain AM378_08640 PF00224 Pyruvate kinase, barrel domain AM378_08640 PF02887 Pyruvate kinase, alpha/beta domain AM378_08650 PF03279 Bacterial lipid A biosynthesis acyltransferase AM378_08655 PF01551 Peptidase family M23 AM378_08655 PF08525 Opacity-associated protein A N-terminal motif AM378_08655 PF01476 LysM domain AM378_08660 PF01297 Zinc-uptake complex component A periplasmic AM378_08665 PF00005 ABC transporter AM378_08670 PF00950 ABC 3 transport family AM378_08675 PF17864 RuvB AAA lid domain AM378_08675 PF05491 RuvB C-terminal winged helix domain AM378_08675 PF05496 Holliday junction DNA helicase RuvB P-loop domain AM378_08680 PF01330 RuvA N terminal domain AM378_08680 PF07499 RuvA, C-terminal domain AM378_08685 PF02075 Crossover junction endodeoxyribonuclease RuvC AM378_08690 PF01709 Transcriptional regulator AM378_08695 PF00293 NUDIX domain AM378_08700 PF01336 OB-fold nucleic acid binding domain AM378_08700 PF00152 tRNA synthetases class II (D, K and N) AM378_08700 PF02938 GAD domain AM378_08710 PF00857 Isochorismatase family AM378_08715 PF01904 Protein of unknown function DUF72 AM378_08720 PF01124 MAPEG family AM378_08725 PF13649 Methyltransferase domain AM378_08730 PF08003 Protein of unknown function (DUF1698) AM378_08735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_08735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM378_08745 PF03932 CutC family AM378_08750 PF00155 Aminotransferase class I and II AM378_08755 PF06185 YecM protein AM378_08760 PF00750 tRNA synthetases class I (R) AM378_08760 PF05746 DALR anticodon binding domain AM378_08760 PF03485 Arginyl tRNA synthetase N terminal domain AM378_08765 PF03023 Lipid II flippase MurJ AM378_08770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_08775 PF04337 Protein of unknown function, DUF480 AM378_08780 PF13302 Acetyltransferase (GNAT) domain AM378_08785 PF07690 Major Facilitator Superfamily AM378_08795 PF04399 Glutaredoxin 2, C terminal domain AM378_08795 PF13417 Glutathione S-transferase, N-terminal domain AM378_08800 PF03109 ABC1 family AM378_08805 PF07273 Protein of unknown function (DUF1439) AM378_08810 PF13995 YebF-like protein AM378_08820 PF07130 YebG protein AM378_08825 PF03880 DbpA RNA binding domain AM378_08825 PF00271 Helicase conserved C-terminal domain AM378_08825 PF00270 DEAD/DEAH box helicase AM378_08830 PF00313 'Cold-shock' DNA-binding domain AM378_08835 PF02222 ATP-grasp domain AM378_08840 PF03701 Uncharacterised protein family (UPF0181) AM378_08845 PF00535 Glycosyl transferase family 2 AM378_08850 PF00425 chorismate binding enzyme AM378_08850 PF04715 Anthranilate synthase component I, N terminal region AM378_08855 PF00293 NUDIX domain AM378_08860 PF03313 Serine dehydratase alpha chain AM378_08860 PF03315 Serine dehydratase beta chain AM378_08865 PF12792 CSS motif domain associated with EAL AM378_08865 PF00563 EAL domain AM378_08870 PF03471 Transporter associated domain AM378_08870 PF03741 Integral membrane protein TerC family AM378_08875 PF03830 PTS system sorbose subfamily IIB component AM378_08875 PF03610 PTS system fructose IIA component AM378_08880 PF03609 PTS system sorbose-specific iic component AM378_08885 PF03613 PTS system mannose/fructose/sorbose family IID component AM378_08890 PF06173 Protein of unknown function (DUF986) AM378_08895 PF02659 Putative manganese efflux pump AM378_08900 PF13847 Methyltransferase domain AM378_08910 PF00313 'Cold-shock' DNA-binding domain AM378_08915 PF10736 Protein of unknown function (DUF2627) AM378_08920 PF12706 Beta-lactamase superfamily domain AM378_08930 PF00324 Amino acid permease AM378_08945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_08950 PF13974 YebO-like protein AM378_08960 PF13996 YobH-like protein AM378_08965 PF10964 Protein of unknown function (DUF2766) AM378_08970 PF13993 YccJ-like protein AM378_08975 PF12833 Helix-turn-helix domain AM378_08985 PF05726 Pirin C-terminal cupin domain AM378_08985 PF02678 Pirin AM378_08990 PF01476 LysM domain AM378_08990 PF04972 BON domain AM378_08995 PF07358 Protein of unknown function (DUF1482) AM378_09010 PF00267 Gram-negative porin AM378_09015 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AM378_09020 PF04996 Succinylarginine dihydrolase AM378_09025 PF00171 Aldehyde dehydrogenase family AM378_09030 PF04958 Arginine N-succinyltransferase beta subunit AM378_09035 PF00202 Aminotransferase class-III AM378_09040 PF07859 alpha/beta hydrolase fold AM378_09045 PF00155 Aminotransferase class I and II AM378_09045 PF00392 Bacterial regulatory proteins, gntR family AM378_09050 PF01654 Cytochrome bd terminal oxidase subunit I AM378_09055 PF02322 Cytochrome bd terminal oxidase subunit II AM378_09105 PF01370 NAD dependent epimerase/dehydratase family AM378_09110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AM378_09110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AM378_09115 PF02665 Nitrate reductase gamma subunit AM378_09120 PF02613 Nitrate reductase delta subunit AM378_09125 PF13247 4Fe-4S dicluster domain AM378_09125 PF14711 Respiratory nitrate reductase beta C-terminal AM378_09130 PF00384 Molybdopterin oxidoreductase AM378_09130 PF01568 Molydopterin dinucleotide binding domain AM378_09130 PF14710 Respiratory nitrate reductase alpha N-terminal AM378_09140 PF00535 Glycosyl transferase family 2 AM378_09145 PF00534 Glycosyl transferases group 1 AM378_09170 PF13807 G-rich domain on putative tyrosine kinase AM378_09170 PF02706 Chain length determinant protein AM378_09170 PF13614 AAA domain AM378_09175 PF02563 Polysaccharide biosynthesis/export protein AM378_09175 PF10531 SLBB domain AM378_09175 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AM378_09180 PF00953 Glycosyl transferase family 4 AM378_09185 PF01370 NAD dependent epimerase/dehydratase family AM378_09190 PF00486 Transcriptional regulatory protein, C terminal AM378_09190 PF18500 CadC C-terminal domain 1 AM378_09195 PF07690 Major Facilitator Superfamily AM378_09200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_09200 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM378_09200 PF00672 HAMP domain AM378_09200 PF07730 Histidine kinase AM378_09205 PF00072 Response regulator receiver domain AM378_09205 PF00196 Bacterial regulatory proteins, luxR family AM378_09210 PF11924 Inverse autotransporter, beta-domain AM378_09225 PF00005 ABC transporter AM378_09225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_09230 PF00005 ABC transporter AM378_09230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_09235 PF00528 Binding-protein-dependent transport system inner membrane component AM378_09235 PF12911 N-terminal TM domain of oligopeptide transport permease C AM378_09240 PF00528 Binding-protein-dependent transport system inner membrane component AM378_09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_09250 PF03466 LysR substrate binding domain AM378_09255 PF04752 ChaC-like protein AM378_09260 PF06150 ChaB AM378_09265 PF08021 Siderophore-interacting FAD-binding domain AM378_09265 PF04954 Siderophore-interacting protein AM378_09270 PF01699 Sodium/calcium exchanger protein AM378_09280 PF04606 Ogr/Delta-like zinc finger AM378_09325 PF02413 Caudovirales tail fibre assembly protein, lambda gpK AM378_09330 PF07484 Phage Tail Collar Domain AM378_09330 PF03335 Phage tail fibre repeat AM378_09330 PF08400 Prophage tail fibre N-terminal AM378_09430 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system AM378_09440 PF05840 Bacteriophage replication gene A protein (GPA) AM378_09480 PF02899 Phage integrase, N-terminal SAM-like domain AM378_09480 PF00589 Phage integrase family AM378_09485 PF02562 PhoH-like protein AM378_09490 PF04261 Dyp-type peroxidase family AM378_09495 PF09375 Imelysin AM378_09495 PF13473 Cupredoxin-like domain AM378_09500 PF03239 Iron permease FTR1 family AM378_09505 PF00474 Sodium:solute symporter family AM378_09510 PF01619 Proline dehydrogenase AM378_09510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AM378_09510 PF14850 DNA-binding domain of Proline dehydrogenase AM378_09510 PF00171 Aldehyde dehydrogenase family AM378_09530 PF00291 Pyridoxal-phosphate dependent enzyme AM378_09535 PF02899 Phage integrase, N-terminal SAM-like domain AM378_09540 PF04539 Sigma-70 region 3 AM378_09540 PF04542 Sigma-70 region 2 AM378_09540 PF04545 Sigma-70, region 4 AM378_09545 PF00700 Bacterial flagellin C-terminal helical region AM378_09545 PF00669 Bacterial flagellin N-terminal helical region AM378_09555 PF07196 Flagellin hook IN motif AM378_09555 PF07195 Flagellar hook-associated protein 2 C-terminus AM378_09555 PF02465 Flagellar hook-associated protein 2 N-terminus AM378_09560 PF02561 Flagellar protein FliS AM378_09565 PF05400 Flagellar protein FliT AM378_09585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_09585 PF03466 LysR substrate binding domain AM378_09590 PF02525 Flavodoxin-like fold AM378_09600 PF02049 Flagellar hook-basal body complex protein FliE AM378_09605 PF01514 Secretory protein of YscJ/FliF family AM378_09605 PF08345 Flagellar M-ring protein C-terminal AM378_09610 PF01706 FliG C-terminal domain AM378_09610 PF14841 FliG middle domain AM378_09610 PF14842 FliG N-terminal domain AM378_09615 PF02108 Flagellar assembly protein FliH AM378_09620 PF18269 T3SS EscN ATPase C-terminal domain AM378_09620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM378_09625 PF02050 Flagellar FliJ protein AM378_09630 PF02120 Flagellar hook-length control protein FliK AM378_09635 PF03748 Flagellar basal body-associated protein FliL AM378_09640 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AM378_09640 PF02154 Flagellar motor switch protein FliM AM378_09645 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AM378_09645 PF16973 Flagellar motor switch protein FliN N-terminal AM378_09650 PF04347 Flagellar biosynthesis protein, FliO AM378_09655 PF00813 FliP family AM378_09660 PF01313 Bacterial export proteins, family 3 AM378_09665 PF01311 Bacterial export proteins, family 1 AM378_09675 PF00669 Bacterial flagellin N-terminal helical region AM378_09680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM378_09680 PF00460 Flagella basal body rod protein AM378_09690 PF10135 Rod binding protein AM378_09690 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AM378_09695 PF02119 Flagellar P-ring protein AM378_09700 PF02107 Flagellar L-ring protein AM378_09705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM378_09705 PF00460 Flagella basal body rod protein AM378_09710 PF00460 Flagella basal body rod protein AM378_09710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM378_09715 PF00460 Flagella basal body rod protein AM378_09715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM378_09715 PF07559 Flagellar basal body protein FlaE AM378_09720 PF13860 FlgD Ig-like domain AM378_09720 PF03963 Flagellar hook capping protein - N-terminal region AM378_09720 PF13861 FlgD Tudor-like domain AM378_09725 PF00460 Flagella basal body rod protein AM378_09725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AM378_09730 PF00460 Flagella basal body rod protein AM378_09735 PF17656 FlgA N-terminal domain AM378_09735 PF13144 Chaperone for flagella basal body P-ring formation AM378_09740 PF04316 Anti-sigma-28 factor, FlgM AM378_09745 PF05130 FlgN protein AM378_09765 PF00771 FHIPEP family AM378_09770 PF01312 FlhB HrpN YscU SpaS Family AM378_09775 PF04344 Chemotaxis phosphatase, CheZ AM378_09780 PF00072 Response regulator receiver domain AM378_09785 PF01339 CheB methylesterase AM378_09785 PF00072 Response regulator receiver domain AM378_09790 PF03705 CheR methyltransferase, all-alpha domain AM378_09790 PF01739 CheR methyltransferase, SAM binding domain AM378_09795 PF02203 Tar ligand binding domain homologue AM378_09795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_09795 PF00672 HAMP domain AM378_09800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_09800 PF02203 Tar ligand binding domain homologue AM378_09800 PF00672 HAMP domain AM378_09805 PF01584 CheW-like domain AM378_09810 PF02895 Signal transducing histidine kinase, homodimeric domain AM378_09810 PF09078 CheY binding AM378_09810 PF01584 CheW-like domain AM378_09810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_09810 PF01627 Hpt domain AM378_09815 PF13677 Membrane MotB of proton-channel complex MotA/MotB AM378_09815 PF00691 OmpA family AM378_09820 PF01618 MotA/TolQ/ExbB proton channel family AM378_09825 PF05280 Flagellar transcriptional activator (FlhC) AM378_09830 PF05247 Flagellar transcriptional activator (FlhD) AM378_09840 PF05321 Haemolysin expression modulating protein AM378_09845 PF00582 Universal stress protein family AM378_09850 PF00107 Zinc-binding dehydrogenase AM378_09850 PF16884 N-terminal domain of oxidoreductase AM378_09855 PF01470 Pyroglutamyl peptidase AM378_09860 PF03466 LysR substrate binding domain AM378_09860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_09865 PF16671 Actin cross-linking domain AM378_09865 PF04717 Type VI secretion system, phage-baseplate injector AM378_09915 PF00691 OmpA family AM378_09915 PF13677 Membrane MotB of proton-channel complex MotA/MotB AM378_09955 PF05638 Type VI secretion system effector, Hcp AM378_10015 PF17871 AAA lid domain AM378_10015 PF00004 ATPase family associated with various cellular activities (AAA) AM378_10015 PF07724 AAA domain (Cdc48 subfamily) AM378_10015 PF10431 C-terminal, D2-small domain, of ClpB protein AM378_10025 PF04717 Type VI secretion system, phage-baseplate injector AM378_10030 PF06445 GyrI-like small molecule binding domain AM378_10035 PF03301 Tryptophan 2,3-dioxygenase AM378_10040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM378_10040 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_10045 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AM378_10045 PF03625 Domain of unknown function DUF302 AM378_10050 PF04224 Protein of unknown function, DUF417 AM378_10055 PF12833 Helix-turn-helix domain AM378_10055 PF12852 Cupin AM378_10060 PF00356 Bacterial regulatory proteins, lacI family AM378_10065 PF07690 Major Facilitator Superfamily AM378_10070 PF00106 short chain dehydrogenase AM378_10080 PF01024 Colicin pore forming domain AM378_10085 PF00857 Isochorismatase family AM378_10090 PF01965 DJ-1/PfpI family AM378_10090 PF12833 Helix-turn-helix domain AM378_10095 PF11798 IMS family HHH motif AM378_10095 PF00817 impB/mucB/samB family AM378_10095 PF11799 impB/mucB/samB family C-terminal domain AM378_10095 PF13438 Domain of unknown function (DUF4113) AM378_10105 PF16220 Domain of unknown function (DUF4880) AM378_10105 PF04773 FecR protein AM378_10110 PF08281 Sigma-70, region 4 AM378_10110 PF04542 Sigma-70 region 2 AM378_10115 PF07715 TonB-dependent Receptor Plug Domain AM378_10115 PF00593 TonB dependent receptor AM378_10120 PF00717 Peptidase S24-like AM378_10145 PF02634 FdhD/NarQ family AM378_10150 PF01062 Bestrophin, RFP-TM, chloride channel AM378_10155 PF04261 Dyp-type peroxidase family AM378_10160 PF03960 ArsC family AM378_10165 PF02040 Arsenical pump membrane protein AM378_10170 PF01022 Bacterial regulatory protein, arsR family AM378_10175 PF04107 Glutamate-cysteine ligase family 2(GCS2) AM378_10195 PF00689 Cation transporting ATPase, C-terminus AM378_10195 PF00690 Cation transporter/ATPase, N-terminus AM378_10200 PF02308 MgtC family AM378_10210 PF02515 CoA-transferase family III AM378_10215 PF03466 LysR substrate binding domain AM378_10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10220 PF00282 Pyridoxal-dependent decarboxylase conserved domain AM378_10230 PF00196 Bacterial regulatory proteins, luxR family AM378_10235 PF10781 Dextransucrase DSRB AM378_10245 PF00313 'Cold-shock' DNA-binding domain AM378_10260 PF16197 Ketoacyl-synthetase C-terminal extension AM378_10260 PF00698 Acyl transferase domain AM378_10260 PF00550 Phosphopantetheine attachment site AM378_10260 PF08240 Alcohol dehydrogenase GroES-like domain AM378_10260 PF00107 Zinc-binding dehydrogenase AM378_10260 PF14765 Polyketide synthase dehydratase AM378_10260 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_10260 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_10260 PF08659 KR domain AM378_10270 PF03466 LysR substrate binding domain AM378_10270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10275 PF06078 Bacterial protein of unknown function (DUF937) AM378_10280 PF04226 Transglycosylase associated protein AM378_10290 PF03279 Bacterial lipid A biosynthesis acyltransferase AM378_10295 PF06983 3-demethylubiquinone-9 3-methyltransferase AM378_10305 PF00360 Phytochrome region AM378_10305 PF00990 Diguanylate cyclase, GGDEF domain AM378_10305 PF01590 GAF domain AM378_10305 PF00563 EAL domain AM378_10315 PF01575 MaoC like domain AM378_10315 PF00171 Aldehyde dehydrogenase family AM378_10320 PF05138 Phenylacetic acid catabolic protein AM378_10325 PF06243 Phenylacetic acid degradation B AM378_10330 PF05138 Phenylacetic acid catabolic protein AM378_10335 PF01883 Iron-sulfur cluster assembly protein AM378_10340 PF00970 Oxidoreductase FAD-binding domain AM378_10340 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_10340 PF00175 Oxidoreductase NAD-binding domain AM378_10345 PF00378 Enoyl-CoA hydratase/isomerase AM378_10350 PF00378 Enoyl-CoA hydratase/isomerase AM378_10355 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AM378_10355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM378_10355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM378_10360 PF03061 Thioesterase superfamily AM378_10365 PF00108 Thiolase, N-terminal domain AM378_10365 PF02803 Thiolase, C-terminal domain AM378_10370 PF00501 AMP-binding enzyme AM378_10370 PF14535 AMP-binding enzyme C-terminal domain AM378_10375 PF07848 PaaX-like protein AM378_10375 PF08223 PaaX-like protein C-terminal domain AM378_10380 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_10385 PF00324 Amino acid permease AM378_10405 PF03466 LysR substrate binding domain AM378_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10410 PF02798 Glutathione S-transferase, N-terminal domain AM378_10425 PF00171 Aldehyde dehydrogenase family AM378_10440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10440 PF03466 LysR substrate binding domain AM378_10445 PF00248 Aldo/keto reductase family AM378_10450 PF00668 Condensation domain AM378_10450 PF00550 Phosphopantetheine attachment site AM378_10450 PF13193 AMP-binding enzyme C-terminal domain AM378_10450 PF00501 AMP-binding enzyme AM378_10450 PF00975 Thioesterase domain AM378_10455 PF00593 TonB dependent receptor AM378_10455 PF07715 TonB-dependent Receptor Plug Domain AM378_10460 PF01011 PQQ enzyme repeat AM378_10495 PF00419 Fimbrial protein AM378_10505 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_10505 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_10510 PF13953 PapC C-terminal domain AM378_10510 PF13954 PapC N-terminal domain AM378_10510 PF00577 Outer membrane usher protein AM378_10515 PF00419 Fimbrial protein AM378_10520 PF00419 Fimbrial protein AM378_10530 PF01554 MatE AM378_10560 PF09339 IclR helix-turn-helix domain AM378_10560 PF01614 Bacterial transcriptional regulator AM378_10565 PF01144 Coenzyme A transferase AM378_10570 PF01144 Coenzyme A transferase AM378_10575 PF00108 Thiolase, N-terminal domain AM378_10575 PF02803 Thiolase, C-terminal domain AM378_10580 PF00206 Lyase AM378_10580 PF10397 Adenylosuccinate lyase C-terminus AM378_10585 PF12146 Serine aminopeptidase, S33 AM378_10590 PF03466 LysR substrate binding domain AM378_10590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10595 PF00775 Dioxygenase AM378_10600 PF00775 Dioxygenase AM378_10600 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AM378_10610 PF07690 Major Facilitator Superfamily AM378_10615 PF01011 PQQ enzyme repeat AM378_10625 PF06167 Glucose-regulated metallo-peptidase M90 AM378_10635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM378_10635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM378_10640 PF01965 DJ-1/PfpI family AM378_10640 PF12833 Helix-turn-helix domain AM378_10650 PF00296 Luciferase-like monooxygenase AM378_10655 PF03070 TENA/THI-4/PQQC family AM378_10660 PF00005 ABC transporter AM378_10665 PF00528 Binding-protein-dependent transport system inner membrane component AM378_10670 PF09084 NMT1/THI5 like AM378_10675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10675 PF03466 LysR substrate binding domain AM378_10685 PF00248 Aldo/keto reductase family AM378_10695 PF00884 Sulfatase AM378_10700 PF01048 Phosphorylase superfamily AM378_10700 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AM378_10705 PF03466 LysR substrate binding domain AM378_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10715 PF04657 Putative inner membrane exporter, YdcZ AM378_10720 PF00583 Acetyltransferase (GNAT) family AM378_10725 PF08671 Anti-repressor SinI AM378_10725 PF01381 Helix-turn-helix AM378_10730 PF11115 Protein of unknown function (DUF2623) AM378_10740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10740 PF03466 LysR substrate binding domain AM378_10750 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM378_10770 PF02272 DHHA1 domain AM378_10770 PF01411 tRNA synthetases class II (A) AM378_10770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM378_10775 PF03466 LysR substrate binding domain AM378_10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10780 PF13532 2OG-Fe(II) oxygenase superfamily AM378_10785 PF00892 EamA-like transporter family AM378_10795 PF00425 chorismate binding enzyme AM378_10805 PF00328 Histidine phosphatase superfamily (branch 2) AM378_10810 PF00939 Sodium:sulfate symporter transmembrane region AM378_10815 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AM378_10820 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase AM378_10825 PF04223 Citrate lyase, alpha subunit (CitF) AM378_10830 PF03328 HpcH/HpaI aldolase/citrate lyase family AM378_10835 PF06857 Malonate decarboxylase delta subunit (MdcD) AM378_10840 PF08218 Citrate lyase ligase C-terminal domain AM378_10845 PF12431 Transcriptional regulator AM378_10845 PF00072 Response regulator receiver domain AM378_10850 PF16353 Domain of unknown function(DUF4981) AM378_10850 PF00703 Glycosyl hydrolases family 2 AM378_10850 PF02837 Glycosyl hydrolases family 2, sugar binding domain AM378_10850 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AM378_10850 PF02929 Beta galactosidase small chain AM378_10860 PF00106 short chain dehydrogenase AM378_10865 PF12833 Helix-turn-helix domain AM378_10865 PF06719 AraC-type transcriptional regulator N-terminus AM378_10875 PF03466 LysR substrate binding domain AM378_10875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_10880 PF00196 Bacterial regulatory proteins, luxR family AM378_10880 PF03472 Autoinducer binding domain AM378_10885 PF01965 DJ-1/PfpI family AM378_10890 PF00005 ABC transporter AM378_10910 PF07690 Major Facilitator Superfamily AM378_10915 PF01520 N-acetylmuramoyl-L-alanine amidase AM378_10920 PF00267 Gram-negative porin AM378_10925 PF00561 alpha/beta hydrolase fold AM378_10930 PF00171 Aldehyde dehydrogenase family AM378_10935 PF00141 Peroxidase AM378_10950 PF00413 Matrixin AM378_10950 PF08548 Peptidase M10 serralysin C terminal AM378_10950 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM378_10955 PF03060 Nitronate monooxygenase AM378_10970 PF00561 alpha/beta hydrolase fold AM378_10975 PF00083 Sugar (and other) transporter AM378_10980 PF07690 Major Facilitator Superfamily AM378_11000 PF00005 ABC transporter AM378_11005 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM378_11005 PF00005 ABC transporter AM378_11010 PF11862 Domain of unknown function (DUF3382) AM378_11010 PF02653 Branched-chain amino acid transport system / permease component AM378_11015 PF02653 Branched-chain amino acid transport system / permease component AM378_11020 PF13458 Periplasmic binding protein AM378_11045 PF07690 Major Facilitator Superfamily AM378_11055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11055 PF03466 LysR substrate binding domain AM378_11060 PF01219 Prokaryotic diacylglycerol kinase AM378_11070 PF00501 AMP-binding enzyme AM378_11075 PF01370 NAD dependent epimerase/dehydratase family AM378_11075 PF00391 PEP-utilising enzyme, mobile domain AM378_11080 PF00550 Phosphopantetheine attachment site AM378_11085 PF00155 Aminotransferase class I and II AM378_11105 PF01943 Polysaccharide biosynthesis protein AM378_11115 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AM378_11120 PF03739 Lipopolysaccharide export system permease LptF/LptG AM378_11140 PF00144 Beta-lactamase AM378_11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11145 PF03466 LysR substrate binding domain AM378_11160 PF07693 KAP family P-loop domain AM378_11165 PF00356 Bacterial regulatory proteins, lacI family AM378_11170 PF00596 Class II Aldolase and Adducin N-terminal domain AM378_11175 PF01261 Xylose isomerase-like TIM barrel AM378_11180 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_11180 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_11185 PF02653 Branched-chain amino acid transport system / permease component AM378_11190 PF00005 ABC transporter AM378_11195 PF13407 Periplasmic binding protein domain AM378_11200 PF00107 Zinc-binding dehydrogenase AM378_11200 PF08240 Alcohol dehydrogenase GroES-like domain AM378_11205 PF03466 LysR substrate binding domain AM378_11205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11210 PF01546 Peptidase family M20/M25/M40 AM378_11210 PF07687 Peptidase dimerisation domain AM378_11215 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_11220 PF04363 Protein of unknown function (DUF496) AM378_11225 PF04632 Fusaric acid resistance protein family AM378_11230 PF01510 N-acetylmuramoyl-L-alanine amidase AM378_11255 PF08411 Exonuclease C-terminal AM378_11255 PF00929 Exonuclease AM378_11260 PF13520 Amino acid permease AM378_11270 PF00120 Glutamine synthetase, catalytic domain AM378_11275 PF01381 Helix-turn-helix AM378_11275 PF07883 Cupin domain AM378_11280 PF00005 ABC transporter AM378_11285 PF02653 Branched-chain amino acid transport system / permease component AM378_11290 PF07715 TonB-dependent Receptor Plug Domain AM378_11290 PF00593 TonB dependent receptor AM378_11300 PF00005 ABC transporter AM378_11305 PF01032 FecCD transport family AM378_11310 PF03707 Bacterial signalling protein N terminal repeat AM378_11310 PF00563 EAL domain AM378_11310 PF00990 Diguanylate cyclase, GGDEF domain AM378_11315 PF00324 Amino acid permease AM378_11320 PF03466 LysR substrate binding domain AM378_11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11330 PF03601 Conserved hypothetical protein 698 AM378_11335 PF01261 Xylose isomerase-like TIM barrel AM378_11340 PF02378 Phosphotransferase system, EIIC AM378_11340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM378_11345 PF00294 pfkB family carbohydrate kinase AM378_11350 PF00381 PTS HPr component phosphorylation site AM378_11350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM378_11360 PF00293 NUDIX domain AM378_11365 PF03264 NapC/NirT cytochrome c family, N-terminal region AM378_11370 PF00384 Molybdopterin oxidoreductase AM378_11370 PF01568 Molydopterin dinucleotide binding domain AM378_11370 PF18364 Molybdopterin oxidoreductase N-terminal domain AM378_11375 PF07690 Major Facilitator Superfamily AM378_11380 PF03692 Putative zinc- or iron-chelating domain AM378_11385 PF03222 Tryptophan/tyrosine permease family AM378_11390 PF08207 Elongation factor P (EF-P) KOW-like domain AM378_11390 PF09285 Elongation factor P, C-terminal AM378_11390 PF01132 Elongation factor P (EF-P) OB domain AM378_11395 PF03786 D-mannonate dehydratase (UxuA) AM378_11400 PF08125 Mannitol dehydrogenase C-terminal domain AM378_11400 PF01232 Mannitol dehydrogenase Rossmann domain AM378_11410 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM378_11410 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM378_11415 PF01569 PAP2 superfamily AM378_11425 PF00877 NlpC/P60 family AM378_11430 PF12792 CSS motif domain associated with EAL AM378_11430 PF00563 EAL domain AM378_11435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_11440 PF00528 Binding-protein-dependent transport system inner membrane component AM378_11445 PF00528 Binding-protein-dependent transport system inner membrane component AM378_11445 PF12911 N-terminal TM domain of oligopeptide transport permease C AM378_11450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_11450 PF00005 ABC transporter AM378_11455 PF13989 YejG-like protein AM378_11460 PF07690 Major Facilitator Superfamily AM378_11465 PF00849 RNA pseudouridylate synthase AM378_11465 PF01479 S4 domain AM378_11470 PF04851 Type III restriction enzyme, res subunit AM378_11470 PF00271 Helicase conserved C-terminal domain AM378_11475 PF01386 Ribosomal L25p family AM378_11480 PF04245 37-kD nucleoid-associated bacterial protein AM378_11485 PF07208 Protein of unknown function (DUF1414) AM378_11490 PF11893 Domain of unknown function (DUF3413) AM378_11490 PF00884 Sulfatase AM378_11500 PF01494 FAD binding domain AM378_11505 PF02798 Glutathione S-transferase, N-terminal domain AM378_11505 PF14497 Glutathione S-transferase, C-terminal domain AM378_11510 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM378_11515 PF07883 Cupin domain AM378_11520 PF07690 Major Facilitator Superfamily AM378_11525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11525 PF03466 LysR substrate binding domain AM378_11530 PF01568 Molydopterin dinucleotide binding domain AM378_11530 PF00384 Molybdopterin oxidoreductase AM378_11530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM378_11535 PF03916 Polysulphide reductase, NrfD AM378_11540 PF13247 4Fe-4S dicluster domain AM378_11545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_11545 PF00512 His Kinase A (phospho-acceptor) domain AM378_11550 PF00196 Bacterial regulatory proteins, luxR family AM378_11550 PF00072 Response regulator receiver domain AM378_11555 PF06183 DinI-like family AM378_11570 PF04355 SmpA / OmlA family AM378_11585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_11590 PF00267 Gram-negative porin AM378_11595 PF13811 Domain of unknown function (DUF4186) AM378_11600 PF07690 Major Facilitator Superfamily AM378_11605 PF01627 Hpt domain AM378_11605 PF16359 RcsD-ABL domain AM378_11605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_11610 PF00072 Response regulator receiver domain AM378_11610 PF00196 Bacterial regulatory proteins, luxR family AM378_11615 PF09456 RcsC Alpha-Beta-Loop (ABL) AM378_11615 PF00072 Response regulator receiver domain AM378_11615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_11615 PF00512 His Kinase A (phospho-acceptor) domain AM378_11620 PF03989 DNA gyrase C-terminal domain, beta-propeller AM378_11620 PF00521 DNA gyrase/topoisomerase IV, subunit A AM378_11630 PF02867 Ribonucleotide reductase, barrel domain AM378_11630 PF00317 Ribonucleotide reductase, all-alpha domain AM378_11630 PF03477 ATP cone domain AM378_11635 PF00268 Ribonucleotide reductase, small chain AM378_11640 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_11645 PF01848 Hok/gef family AM378_11660 PF00994 Probable molybdopterin binding domain AM378_11665 PF03222 Tryptophan/tyrosine permease family AM378_11670 PF07437 YfaZ precursor AM378_11675 PF06628 Catalase-related immune-responsive AM378_11675 PF00199 Catalase AM378_11680 PF00501 AMP-binding enzyme AM378_11680 PF13193 AMP-binding enzyme C-terminal domain AM378_11685 PF13378 Enolase C-terminal domain-like AM378_11690 PF00378 Enoyl-CoA hydratase/isomerase AM378_11695 PF12697 Alpha/beta hydrolase family AM378_11700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_11700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_11700 PF16582 Middle domain of thiamine pyrophosphate AM378_11705 PF05957 Bacterial protein of unknown function (DUF883) AM378_11710 PF08240 Alcohol dehydrogenase GroES-like domain AM378_11710 PF00107 Zinc-binding dehydrogenase AM378_11715 PF00106 short chain dehydrogenase AM378_11720 PF00356 Bacterial regulatory proteins, lacI family AM378_11725 PF06496 Protein of unknown function (DUF1097) AM378_11735 PF03466 LysR substrate binding domain AM378_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11740 PF00361 Proton-conducting membrane transporter AM378_11745 PF00361 Proton-conducting membrane transporter AM378_11750 PF00361 Proton-conducting membrane transporter AM378_11750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AM378_11755 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AM378_11760 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AM378_11765 PF12838 4Fe-4S dicluster domain AM378_11770 PF00146 NADH dehydrogenase AM378_11775 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM378_11775 PF01568 Molydopterin dinucleotide binding domain AM378_11775 PF00384 Molybdopterin oxidoreductase AM378_11775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM378_11780 PF10531 SLBB domain AM378_11780 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM378_11780 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AM378_11790 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AM378_11790 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AM378_11795 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AM378_11800 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AM378_11805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_11805 PF03466 LysR substrate binding domain AM378_11810 PF00155 Aminotransferase class I and II AM378_11820 PF03600 Citrate transporter AM378_11820 PF02080 TrkA-C domain AM378_11825 PF13419 Haloacid dehalogenase-like hydrolase AM378_11830 PF03887 YfbU domain AM378_11835 PF04217 Protein of unknown function, DUF412 AM378_11840 PF00871 Acetokinase family AM378_11845 PF01515 Phosphate acetyl/butaryl transferase AM378_11845 PF07085 DRTGG domain AM378_11860 PF02780 Transketolase, C-terminal domain AM378_11860 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM378_11860 PF02779 Transketolase, pyrimidine binding domain AM378_11865 PF00456 Transketolase, thiamine diphosphate binding domain AM378_11870 PF03611 PTS system sugar-specific permease component AM378_11880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM378_11885 PF00356 Bacterial regulatory proteins, lacI family AM378_11890 PF00293 NUDIX domain AM378_11895 PF12850 Calcineurin-like phosphoesterase superfamily domain AM378_11900 PF00043 Glutathione S-transferase, C-terminal domain AM378_11900 PF02798 Glutathione S-transferase, N-terminal domain AM378_11905 PF02152 Dihydroneopterin aldolase AM378_11910 PF08338 Domain of unknown function (DUF1731) AM378_11910 PF01370 NAD dependent epimerase/dehydratase family AM378_11915 PF00005 ABC transporter AM378_11920 PF00528 Binding-protein-dependent transport system inner membrane component AM378_11925 PF00528 Binding-protein-dependent transport system inner membrane component AM378_11930 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_11935 PF02441 Flavoprotein AM378_11940 PF00156 Phosphoribosyl transferase domain AM378_11945 PF02674 Colicin V production protein AM378_11950 PF05036 Sporulation related domain AM378_11955 PF08245 Mur ligase middle domain AM378_11955 PF02875 Mur ligase family, glutamate ligase domain AM378_11960 PF01039 Carboxyl transferase domain AM378_11960 PF17848 Acetyl-coA carboxylase zinc finger domain AM378_11965 PF09335 SNARE associated Golgi protein AM378_11970 PF01416 tRNA pseudouridine synthase AM378_11975 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM378_11975 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM378_11980 PF11890 Domain of unknown function (DUF3410) AM378_11980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM378_11980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM378_11990 PF00892 EamA-like transporter family AM378_11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_11995 PF00512 His Kinase A (phospho-acceptor) domain AM378_11995 PF08521 Two-component sensor kinase N-terminal AM378_12000 PF00486 Transcriptional regulatory protein, C terminal AM378_12000 PF00072 Response regulator receiver domain AM378_12020 PF01970 Tripartite tricarboxylate transporter TctA family AM378_12025 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_12035 PF00155 Aminotransferase class I and II AM378_12040 PF00578 AhpC/TSA family AM378_12050 PF11412 Disulphide bond corrector protein DsbC AM378_12050 PF02683 Cytochrome C biogenesis protein transmembrane region AM378_12070 PF00155 Aminotransferase class I and II AM378_12070 PF00392 Bacterial regulatory proteins, gntR family AM378_12080 PF01546 Peptidase family M20/M25/M40 AM378_12080 PF07687 Peptidase dimerisation domain AM378_12085 PF03600 Citrate transporter AM378_12090 PF02424 ApbE family AM378_12100 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_12100 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_12105 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AM378_12105 PF01266 FAD dependent oxidoreductase AM378_12110 PF08891 YfcL protein AM378_12115 PF04315 Elongation factor P hydroxylase AM378_12120 PF01925 Sulfite exporter TauE/SafE AM378_12125 PF03411 Penicillin-insensitive murein endopeptidase AM378_12130 PF01264 Chorismate synthase AM378_12135 PF05175 Methyltransferase small domain AM378_12140 PF01713 Smr domain AM378_12145 PF00300 Histidine phosphatase superfamily (branch 1) AM378_12150 PF00378 Enoyl-CoA hydratase/isomerase AM378_12150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM378_12150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM378_12155 PF00108 Thiolase, N-terminal domain AM378_12155 PF02803 Thiolase, C-terminal domain AM378_12160 PF04175 Protein of unknown function (DUF406) AM378_12165 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AM378_12170 PF04333 MlaA lipoprotein AM378_12175 PF03918 Cytochrome C biogenesis protein AM378_12180 PF03918 Cytochrome C biogenesis protein AM378_12185 PF08534 Redoxin AM378_12190 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AM378_12190 PF01578 Cytochrome C assembly protein AM378_12195 PF03100 CcmE AM378_12200 PF04995 Heme exporter protein D (CcmD) AM378_12205 PF01578 Cytochrome C assembly protein AM378_12210 PF03379 CcmB protein AM378_12215 PF00005 ABC transporter AM378_12220 PF01226 Formate/nitrite transporter AM378_12230 PF10282 Lactonase, 7-bladed beta-propeller AM378_12235 PF06445 GyrI-like small molecule binding domain AM378_12235 PF12833 Helix-turn-helix domain AM378_12250 PF00072 Response regulator receiver domain AM378_12250 PF00196 Bacterial regulatory proteins, luxR family AM378_12260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_12260 PF03466 LysR substrate binding domain AM378_12270 PF00892 EamA-like transporter family AM378_12285 PF13406 Transglycosylase SLT domain AM378_12300 PF00535 Glycosyl transferase family 2 AM378_12305 PF01522 Polysaccharide deacetylase AM378_12305 PF14883 Hypothetical glycosyl hydrolase family 13 AM378_12325 PF01292 Prokaryotic cytochrome b561 AM378_12330 PF00155 Aminotransferase class I and II AM378_12340 PF07350 Protein of unknown function (DUF1479) AM378_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_12345 PF07694 5TMR of 5TMR-LYT AM378_12345 PF06580 Histidine kinase AM378_12350 PF00072 Response regulator receiver domain AM378_12350 PF04397 LytTr DNA-binding domain AM378_12355 PF10697 Protein of unknown function (DUF2502) AM378_12360 PF07690 Major Facilitator Superfamily AM378_12365 PF02685 Glucokinase AM378_12370 PF00654 Voltage gated chloride channel AM378_12375 PF01177 Asp/Glu/Hydantoin racemase AM378_12385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_12385 PF03466 LysR substrate binding domain AM378_12390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_12390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_12390 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_12395 PF00248 Aldo/keto reductase family AM378_12400 PF10697 Protein of unknown function (DUF2502) AM378_12405 PF01566 Natural resistance-associated macrophage protein AM378_12410 PF07662 Na+ dependent nucleoside transporter C-terminus AM378_12410 PF01773 Na+ dependent nucleoside transporter N-terminus AM378_12410 PF07670 Nucleoside recognition AM378_12420 PF00419 Fimbrial protein AM378_12425 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_12425 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_12430 PF13954 PapC N-terminal domain AM378_12430 PF13953 PapC C-terminal domain AM378_12430 PF00577 Outer membrane usher protein AM378_12455 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM378_12485 PF01497 Periplasmic binding protein AM378_12490 PF01032 FecCD transport family AM378_12495 PF01032 FecCD transport family AM378_12500 PF00005 ABC transporter AM378_12505 PF11806 Domain of unknown function (DUF3327) AM378_12505 PF00756 Putative esterase AM378_12510 PF00593 TonB dependent receptor AM378_12510 PF07715 TonB-dependent Receptor Plug Domain AM378_12515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_12520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_12520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_12520 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_12525 PF03306 Alpha-acetolactate decarboxylase AM378_12530 PF03466 LysR substrate binding domain AM378_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_12535 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AM378_12540 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AM378_12555 PF03466 LysR substrate binding domain AM378_12555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_12560 PF13593 SBF-like CPA transporter family (DUF4137) AM378_12565 PF12843 Putative quorum-sensing-regulated virulence factor AM378_12570 PF00533 BRCA1 C Terminus (BRCT) domain AM378_12570 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AM378_12570 PF12826 Helix-hairpin-helix motif AM378_12570 PF03120 NAD-dependent DNA ligase OB-fold domain AM378_12570 PF01653 NAD-dependent DNA ligase adenylation domain AM378_12575 PF04354 ZipA, C-terminal FtsZ-binding domain AM378_12585 PF00291 Pyridoxal-phosphate dependent enzyme AM378_12590 PF00381 PTS HPr component phosphorylation site AM378_12595 PF02896 PEP-utilising enzyme, TIM barrel domain AM378_12595 PF05524 PEP-utilising enzyme, N-terminal AM378_12595 PF00391 PEP-utilising enzyme, mobile domain AM378_12600 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM378_12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_12605 PF00672 HAMP domain AM378_12605 PF16527 Two-component sensor protein CpxA, periplasmic domain AM378_12605 PF00512 His Kinase A (phospho-acceptor) domain AM378_12610 PF00486 Transcriptional regulatory protein, C terminal AM378_12610 PF00072 Response regulator receiver domain AM378_12615 PF00291 Pyridoxal-phosphate dependent enzyme AM378_12620 PF00005 ABC transporter AM378_12625 PF00528 Binding-protein-dependent transport system inner membrane component AM378_12630 PF00528 Binding-protein-dependent transport system inner membrane component AM378_12640 PF04261 Dyp-type peroxidase family AM378_12645 PF06572 Protein of unknown function (DUF1131) AM378_12650 PF11143 Protein of unknown function (DUF2919) AM378_12655 PF04076 Bacterial OB fold (BOF) protein AM378_12660 PF00583 Acetyltransferase (GNAT) family AM378_12665 PF01520 N-acetylmuramoyl-L-alanine amidase AM378_12670 PF01218 Coproporphyrinogen III oxidase AM378_12675 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AM378_12680 PF07715 TonB-dependent Receptor Plug Domain AM378_12680 PF00593 TonB dependent receptor AM378_12685 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AM378_12685 PF00326 Prolyl oligopeptidase family AM378_12700 PF00324 Amino acid permease AM378_12705 PF02574 Homocysteine S-methyltransferase AM378_12710 PF01515 Phosphate acetyl/butaryl transferase AM378_12710 PF03949 Malic enzyme, NAD binding domain AM378_12710 PF00390 Malic enzyme, N-terminal domain AM378_12730 PF00704 Glycosyl hydrolases family 18 AM378_12735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_12735 PF03466 LysR substrate binding domain AM378_12740 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AM378_12740 PF18416 N-acetylglucosamine binding protein domain 2 AM378_12745 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM378_12750 PF02779 Transketolase, pyrimidine binding domain AM378_12750 PF02780 Transketolase, C-terminal domain AM378_12750 PF00456 Transketolase, thiamine diphosphate binding domain AM378_12755 PF00293 NUDIX domain AM378_12765 PF07730 Histidine kinase AM378_12765 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AM378_12765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_12765 PF00672 HAMP domain AM378_12770 PF00196 Bacterial regulatory proteins, luxR family AM378_12770 PF00072 Response regulator receiver domain AM378_12780 PF00873 AcrB/AcrD/AcrF family AM378_12790 PF00583 Acetyltransferase (GNAT) family AM378_12800 PF03960 ArsC family AM378_12805 PF07687 Peptidase dimerisation domain AM378_12805 PF01546 Peptidase family M20/M25/M40 AM378_12810 PF02557 D-alanyl-D-alanine carboxypeptidase AM378_12815 PF13980 Uncharacterised protein family (UPF0370) AM378_12820 PF02230 Phospholipase/Carboxylesterase AM378_12825 PF17176 tRNA-binding domain AM378_12825 PF05127 Helicase AM378_12825 PF08351 Domain of unknown function (DUF1726) AM378_12825 PF13718 GNAT acetyltransferase 2 AM378_12830 PF04228 Putative neutral zinc metallopeptidase AM378_12835 PF01259 SAICAR synthetase AM378_12840 PF06804 NlpB/DapX lipoprotein AM378_12845 PF00701 Dihydrodipicolinate synthetase family AM378_12850 PF01842 ACT domain AM378_12855 PF00578 AhpC/TSA family AM378_12860 PF01594 AI-2E family transporter AM378_12870 PF00593 TonB dependent receptor AM378_12870 PF07715 TonB-dependent Receptor Plug Domain AM378_12890 PF13404 AsnC-type helix-turn-helix domain AM378_12890 PF01037 Lrp/AsnC ligand binding domain AM378_12895 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_12905 PF07720 Tetratricopeptide repeat AM378_12905 PF01435 Peptidase family M48 AM378_12910 PF03960 ArsC family AM378_12915 PF00308 Bacterial dnaA protein AM378_12925 PF04226 Transglycosylase associated protein AM378_12935 PF00860 Permease family AM378_12945 PF02769 AIR synthase related protein, C-terminal domain AM378_12945 PF00586 AIR synthase related protein, N-terminal domain AM378_12950 PF00551 Formyl transferase AM378_12955 PF13302 Acetyltransferase (GNAT) domain AM378_12985 PF04829 Pre-toxin domain with VENN motif AM378_12985 PF05860 haemagglutination activity domain AM378_12985 PF13332 Hemagglutinin repeat AM378_12985 PF05594 Haemagluttinin repeat AM378_12985 PF15526 Novel toxin 21 AM378_12990 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM378_12990 PF17287 POTRA domain AM378_12990 PF08479 POTRA domain, ShlB-type AM378_13005 PF00005 ABC transporter AM378_13010 PF00528 Binding-protein-dependent transport system inner membrane component AM378_13015 PF00528 Binding-protein-dependent transport system inner membrane component AM378_13020 PF02503 Polyphosphate kinase middle domain AM378_13020 PF13090 Polyphosphate kinase C-terminal domain 2 AM378_13020 PF17941 Polyphosphate kinase C-terminal domain 1 AM378_13020 PF13089 Polyphosphate kinase N-terminal domain AM378_13025 PF02541 Ppx/GppA phosphatase family AM378_13035 PF03448 MgtE intracellular N domain AM378_13035 PF01769 Divalent cation transporter AM378_13035 PF00571 CBS domain AM378_13040 PF08447 PAS fold AM378_13040 PF00990 Diguanylate cyclase, GGDEF domain AM378_13040 PF05231 MASE1 AM378_13040 PF00563 EAL domain AM378_13040 PF13426 PAS domain AM378_13040 PF08448 PAS fold AM378_13050 PF06029 AlkA N-terminal domain AM378_13050 PF12833 Helix-turn-helix domain AM378_13050 PF00730 HhH-GPD superfamily base excision DNA repair protein AM378_13050 PF02805 Metal binding domain of Ada AM378_13055 PF00012 Hsp70 protein AM378_13070 PF00248 Aldo/keto reductase family AM378_13075 PF13533 Biotin-lipoyl like AM378_13080 PF00873 AcrB/AcrD/AcrF family AM378_13085 PF00873 AcrB/AcrD/AcrF family AM378_13090 PF07690 Major Facilitator Superfamily AM378_13095 PF00672 HAMP domain AM378_13095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_13095 PF00512 His Kinase A (phospho-acceptor) domain AM378_13100 PF00486 Transcriptional regulatory protein, C terminal AM378_13100 PF00072 Response regulator receiver domain AM378_13115 PF07411 Domain of unknown function (DUF1508) AM378_13125 PF00781 Diacylglycerol kinase catalytic domain AM378_13130 PF01791 DeoC/LacD family aldolase AM378_13140 PF03608 PTS system enzyme II sorbitol-specific factor AM378_13145 PF07663 Sorbitol phosphotransferase enzyme II C-terminus AM378_13145 PF03612 Sorbitol phosphotransferase enzyme II N-terminus AM378_13150 PF03829 PTS system glucitol/sorbitol-specific IIA component AM378_13155 PF00106 short chain dehydrogenase AM378_13160 PF06923 Glucitol operon activator protein (GutM) AM378_13165 PF08220 DeoR-like helix-turn-helix domain AM378_13165 PF00455 DeoR C terminal sensor domain AM378_13170 PF00571 CBS domain AM378_13170 PF01380 SIS domain AM378_13180 PF08543 Phosphomethylpyrimidine kinase AM378_13185 PF02110 Hydroxyethylthiazole kinase family AM378_13200 PF07690 Major Facilitator Superfamily AM378_13205 PF01638 HxlR-like helix-turn-helix AM378_13220 PF01479 S4 domain AM378_13220 PF00849 RNA pseudouridylate synthase AM378_13235 PF00072 Response regulator receiver domain AM378_13235 PF00196 Bacterial regulatory proteins, luxR family AM378_13240 PF01627 Hpt domain AM378_13240 PF00072 Response regulator receiver domain AM378_13240 PF00512 His Kinase A (phospho-acceptor) domain AM378_13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_13240 PF00672 HAMP domain AM378_13240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM378_13250 PF01638 HxlR-like helix-turn-helix AM378_13255 PF00958 GMP synthase C terminal domain AM378_13255 PF02540 NAD synthase AM378_13255 PF00117 Glutamine amidotransferase class-I AM378_13260 PF00571 CBS domain AM378_13260 PF00478 IMP dehydrogenase / GMP reductase domain AM378_13270 PF02601 Exonuclease VII, large subunit AM378_13270 PF13742 OB-fold nucleic acid binding domain AM378_13275 PF16338 Domain of unknown function (DUF4968) AM378_13275 PF13802 Galactose mutarotase-like AM378_13275 PF01055 Glycosyl hydrolases family 31 AM378_13275 PF17137 Domain of unknown function (DUF5110) AM378_13280 PF07690 Major Facilitator Superfamily AM378_13285 PF00356 Bacterial regulatory proteins, lacI family AM378_13290 PF16485 Protealysin propeptide AM378_13290 PF02868 Thermolysin metallopeptidase, alpha-helical domain AM378_13290 PF01447 Thermolysin metallopeptidase, catalytic domain AM378_13300 PF07191 zinc-ribbons AM378_13310 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AM378_13310 PF01926 50S ribosome-binding GTPase AM378_13315 PF13360 PQQ-like domain AM378_13320 PF09976 Tetratricopeptide repeat-like domain AM378_13325 PF13393 Histidyl-tRNA synthetase AM378_13325 PF03129 Anticodon binding domain AM378_13330 PF04551 GcpE protein AM378_13335 PF13464 Domain of unknown function (DUF4115) AM378_13345 PF04055 Radical SAM superfamily AM378_13350 PF00334 Nucleoside diphosphate kinase AM378_13355 PF14581 SseB protein C-terminal domain AM378_13355 PF07179 SseB protein N-terminal domain AM378_13360 PF00883 Cytosol aminopeptidase family, catalytic domain AM378_13360 PF12404 Peptidase AM378_13365 PF04384 Iron-sulphur cluster assembly AM378_13370 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_13375 PF00012 Hsp70 protein AM378_13380 PF00226 DnaJ domain AM378_13380 PF07743 HSCB C-terminal oligomerisation domain AM378_13385 PF01521 Iron-sulphur cluster biosynthesis AM378_13390 PF01592 NifU-like N terminal domain AM378_13395 PF00266 Aminotransferase class-V AM378_13400 PF02082 Transcriptional regulator AM378_13405 PF00588 SpoU rRNA Methylase family AM378_13410 PF00459 Inositol monophosphatase family AM378_13415 PF03824 High-affinity nickel-transport protein AM378_13420 PF06226 Protein of unknown function (DUF1007) AM378_13425 PF00874 PRD domain AM378_13430 PF12832 MFS_1 like family AM378_13435 PF00464 Serine hydroxymethyltransferase AM378_13440 PF00042 Globin AM378_13440 PF00175 Oxidoreductase NAD-binding domain AM378_13440 PF00970 Oxidoreductase FAD-binding domain AM378_13445 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_13445 PF00034 Cytochrome c AM378_13455 PF00171 Aldehyde dehydrogenase family AM378_13460 PF00528 Binding-protein-dependent transport system inner membrane component AM378_13465 PF00528 Binding-protein-dependent transport system inner membrane component AM378_13470 PF00005 ABC transporter AM378_13470 PF08402 TOBE domain AM378_13475 PF13416 Bacterial extracellular solute-binding protein AM378_13480 PF00171 Aldehyde dehydrogenase family AM378_13485 PF03466 LysR substrate binding domain AM378_13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_13500 PF00543 Nitrogen regulatory protein P-II AM378_13505 PF02540 NAD synthase AM378_13505 PF00795 Carbon-nitrogen hydrolase AM378_13510 PF00158 Sigma-54 interaction domain AM378_13510 PF00072 Response regulator receiver domain AM378_13515 PF13942 YfhG lipoprotein AM378_13520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_13520 PF00512 His Kinase A (phospho-acceptor) domain AM378_13525 PF02769 AIR synthase related protein, C-terminal domain AM378_13525 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AM378_13525 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AM378_13530 PF01464 Transglycosylase SLT domain AM378_13530 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_13535 PF14437 MafB19-like deaminase AM378_13550 PF02378 Phosphotransferase system, EIIC AM378_13550 PF00367 phosphotransferase system, EIIB AM378_13555 PF13580 SIS domain AM378_13560 PF01418 Helix-turn-helix domain, rpiR family AM378_13560 PF01380 SIS domain AM378_13565 PF00884 Sulfatase AM378_13570 PF12838 4Fe-4S dicluster domain AM378_13575 PF01648 4'-phosphopantetheinyl transferase superfamily AM378_13580 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AM378_13585 PF02565 Recombination protein O C terminal AM378_13585 PF11967 Recombination protein O N terminal AM378_13590 PF07650 KH domain AM378_13590 PF01926 50S ribosome-binding GTPase AM378_13595 PF14622 Ribonuclease-III-like AM378_13595 PF00035 Double-stranded RNA binding motif AM378_13600 PF10502 Signal peptidase, peptidase S26 AM378_13605 PF06421 GTP-binding protein LepA C-terminus AM378_13605 PF00009 Elongation factor Tu GTP binding domain AM378_13605 PF00679 Elongation factor G C-terminus AM378_13605 PF03144 Elongation factor Tu domain 2 AM378_13620 PF17188 MucB/RseB C-terminal domain AM378_13620 PF03888 MucB/RseB N-terminal domain AM378_13625 PF03873 Anti sigma-E protein RseA, C-terminal domain AM378_13625 PF03872 Anti sigma-E protein RseA, N-terminal domain AM378_13630 PF08281 Sigma-70, region 4 AM378_13630 PF04542 Sigma-70 region 2 AM378_13635 PF02910 Fumarate reductase flavoprotein C-term AM378_13635 PF00890 FAD binding domain AM378_13640 PF05175 Methyltransferase small domain AM378_13645 PF00271 Helicase conserved C-terminal domain AM378_13645 PF00270 DEAD/DEAH box helicase AM378_13650 PF12796 Ankyrin repeats (3 copies) AM378_13660 PF01228 Glycine radical AM378_13665 PF03167 Uracil DNA glycosylase superfamily AM378_13670 PF01025 GrpE AM378_13675 PF01513 ATP-NAD kinase AM378_13680 PF02463 RecF/RecN/SMC N terminal domain AM378_13685 PF04355 SmpA / OmlA family AM378_13690 PF03658 RnfH family Ubiquitin AM378_13695 PF03364 Polyketide cyclase / dehydrase and lipid transport AM378_13700 PF01668 SmpB protein AM378_13710 PF13356 Arm DNA-binding domain AM378_13710 PF00589 Phage integrase family AM378_13720 PF04606 Ogr/Delta-like zinc finger AM378_13750 PF17345 Family of unknown function (DUF5375) AM378_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_13795 PF03466 LysR substrate binding domain AM378_13805 PF07690 Major Facilitator Superfamily AM378_13820 PF01235 Sodium:alanine symporter family AM378_13840 PF10749 Protein of unknown function (DUF2534) AM378_13850 PF13673 Acetyltransferase (GNAT) domain AM378_13860 PF00583 Acetyltransferase (GNAT) family AM378_13865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_13865 PF03466 LysR substrate binding domain AM378_13880 PF14542 GCN5-related N-acetyl-transferase AM378_13885 PF06902 Divergent 4Fe-4S mono-cluster AM378_13890 PF07681 DoxX AM378_13895 PF01713 Smr domain AM378_13905 PF06711 Protein of unknown function (DUF1198) AM378_13910 PF09400 Protein of unknown function (DUF2002) AM378_13915 PF07690 Major Facilitator Superfamily AM378_13920 PF03466 LysR substrate binding domain AM378_13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_13925 PF07690 Major Facilitator Superfamily AM378_13935 PF06392 Acid shock protein repeat AM378_13940 PF05957 Bacterial protein of unknown function (DUF883) AM378_13945 PF00392 Bacterial regulatory proteins, gntR family AM378_13945 PF00155 Aminotransferase class I and II AM378_13950 PF02627 Carboxymuconolactone decarboxylase family AM378_13955 PF00462 Glutaredoxin AM378_13960 PF07972 NrdI Flavodoxin like AM378_13965 PF00317 Ribonucleotide reductase, all-alpha domain AM378_13965 PF08343 Ribonucleotide reductase N-terminal AM378_13965 PF02867 Ribonucleotide reductase, barrel domain AM378_13970 PF00268 Ribonucleotide reductase, small chain AM378_13995 PF00753 Metallo-beta-lactamase superfamily AM378_14000 PF01734 Patatin-like phospholipase AM378_14005 PF03390 2-hydroxycarboxylate transporter family AM378_14010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_14010 PF17203 Single cache domain 3 AM378_14015 PF00072 Response regulator receiver domain AM378_14015 PF12431 Transcriptional regulator AM378_14020 PF00571 CBS domain AM378_14020 PF00005 ABC transporter AM378_14025 PF00528 Binding-protein-dependent transport system inner membrane component AM378_14030 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM378_14035 PF03466 LysR substrate binding domain AM378_14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_14040 PF07690 Major Facilitator Superfamily AM378_14045 PF03591 AzlC protein AM378_14050 PF05437 Branched-chain amino acid transport protein (AzlD) AM378_14055 PF01047 MarR family AM378_14060 PF02321 Outer membrane efflux protein AM378_14065 PF00529 HlyD membrane-fusion protein of T1SS AM378_14065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_14070 PF07690 Major Facilitator Superfamily AM378_14075 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM378_14075 PF00588 SpoU rRNA Methylase family AM378_14080 PF00085 Thioredoxin AM378_14090 PF13607 Succinyl-CoA ligase like flavodoxin domain AM378_14090 PF13380 CoA binding domain AM378_14090 PF00583 Acetyltransferase (GNAT) family AM378_14095 PF13091 PLD-like domain AM378_14100 PF00083 Sugar (and other) transporter AM378_14140 PF09383 NIL domain AM378_14140 PF00005 ABC transporter AM378_14145 PF00528 Binding-protein-dependent transport system inner membrane component AM378_14150 PF03180 NLPA lipoprotein AM378_14155 PF16358 RcsF lipoprotein AM378_14160 PF18389 TrmO C-terminal domain AM378_14160 PF01980 tRNA-methyltransferase O AM378_14165 PF03129 Anticodon binding domain AM378_14165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AM378_14165 PF04073 Aminoacyl-tRNA editing domain AM378_14170 PF04170 NlpE N-terminal domain AM378_14170 PF17185 NlpE C-terminal OB domain AM378_14175 PF00472 RF-1 domain AM378_14180 PF07152 YaeQ protein AM378_14185 PF06786 Uncharacterised protein family (UPF0253) AM378_14190 PF07073 Modulator of Rho-dependent transcription termination (ROF) AM378_14195 PF00034 Cytochrome c AM378_14200 PF11734 TilS substrate C-terminal domain AM378_14200 PF01171 PP-loop family AM378_14200 PF09179 TilS substrate binding domain AM378_14205 PF00854 POT family AM378_14210 PF01276 Orn/Lys/Arg decarboxylase, major domain AM378_14210 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM378_14210 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM378_14215 PF13520 Amino acid permease AM378_14220 PF18500 CadC C-terminal domain 1 AM378_14220 PF00486 Transcriptional regulatory protein, C terminal AM378_14225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_14240 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AM378_14245 PF07733 Bacterial DNA polymerase III alpha NTPase domain AM378_14245 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AM378_14245 PF14579 Helix-hairpin-helix motif AM378_14245 PF01336 OB-fold nucleic acid binding domain AM378_14245 PF02811 PHP domain AM378_14250 PF01351 Ribonuclease HII AM378_14255 PF02684 Lipid-A-disaccharide synthetase AM378_14260 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AM378_14260 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_14265 PF07977 FabA-like domain AM378_14270 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AM378_14270 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_14275 PF03938 Outer membrane protein (OmpH-like) AM378_14280 PF01103 Surface antigen AM378_14280 PF07244 Surface antigen variable number repeat AM378_14285 PF02163 Peptidase family M50 AM378_14285 PF17820 PDZ domain AM378_14295 PF01255 Putative undecaprenyl diphosphate synthase AM378_14300 PF13288 DXP reductoisomerase C-terminal domain AM378_14300 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AM378_14300 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AM378_14305 PF01765 Ribosome recycling factor AM378_14310 PF00696 Amino acid kinase family AM378_14315 PF00889 Elongation factor TS AM378_14320 PF00318 Ribosomal protein S2 AM378_14325 PF00557 Metallopeptidase family M24 AM378_14330 PF01842 ACT domain AM378_14330 PF01909 Nucleotidyltransferase domain AM378_14330 PF01966 HD domain AM378_14330 PF08335 GlnD PII-uridylyltransferase AM378_14335 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AM378_14335 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_14335 PF14602 Hexapeptide repeat of succinyl-transferase AM378_14340 PF11944 Protein of unknown function (DUF3461) AM378_14345 PF00258 Flavodoxin AM378_14350 PF00849 RNA pseudouridylate synthase AM378_14355 PF00912 Transglycosylase AM378_14355 PF00905 Penicillin binding protein transpeptidase domain AM378_14355 PF06832 Penicillin-Binding Protein C-terminus Family AM378_14360 PF01835 MG2 domain AM378_14360 PF17962 Bacterial macroglobulin domain 6 AM378_14360 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AM378_14360 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AM378_14360 PF07703 Alpha-2-macroglobulin bait region domain AM378_14360 PF00207 Alpha-2-macroglobulin family AM378_14360 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AM378_14365 PF04287 tRNA pseudouridine synthase C AM378_14370 PF07690 Major Facilitator Superfamily AM378_14375 PF07348 Syd protein (SUKH-2) AM378_14380 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM378_14380 PF14489 QueF-like protein AM378_14385 PF11892 Domain of unknown function (DUF3412) AM378_14385 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AM378_14385 PF03641 Possible lysine decarboxylase AM378_14390 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM378_14390 PF01367 5'-3' exonuclease, C-terminal SAM fold AM378_14395 PF18125 RlmM ferredoxin-like domain AM378_14395 PF01728 FtsJ-like methyltransferase AM378_14400 PF04241 Protein of unknown function (DUF423) AM378_14405 PF03466 LysR substrate binding domain AM378_14405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_14410 PF06004 Bacterial protein of unknown function (DUF903) AM378_14415 PF00266 Aminotransferase class-V AM378_14420 PF02657 Fe-S metabolism associated domain AM378_14425 PF00899 ThiF family AM378_14430 PF06725 3D domain AM378_14430 PF03562 MltA specific insert domain AM378_14450 PF01520 N-acetylmuramoyl-L-alanine amidase AM378_14450 PF11741 AMIN domain AM378_14455 PF00696 Amino acid kinase family AM378_14455 PF00583 Acetyltransferase (GNAT) family AM378_14460 PF13538 UvrD-like helicase C-terminal domain AM378_14465 PF13361 UvrD-like helicase C-terminal domain AM378_14465 PF12705 PD-(D/E)XK nuclease superfamily AM378_14465 PF00580 UvrD/REP helicase N-terminal domain AM378_14470 PF05193 Peptidase M16 inactive domain AM378_14470 PF16187 Middle or third domain of peptidase_M16 AM378_14470 PF00675 Insulinase (Peptidase family M16) AM378_14475 PF17946 RecC C-terminal domain AM378_14495 PF07963 Prokaryotic N-terminal methylation motif AM378_14500 PF00303 Thymidylate synthase AM378_14505 PF01790 Prolipoprotein diacylglyceryl transferase AM378_14510 PF01590 GAF domain AM378_14510 PF05524 PEP-utilising enzyme, N-terminal AM378_14510 PF00391 PEP-utilising enzyme, mobile domain AM378_14510 PF02896 PEP-utilising enzyme, TIM barrel domain AM378_14515 PF00293 NUDIX domain AM378_14520 PF02976 DNA mismatch repair enzyme MutH AM378_14525 PF03741 Integral membrane protein TerC family AM378_14530 PF06004 Bacterial protein of unknown function (DUF903) AM378_14535 PF00248 Aldo/keto reductase family AM378_14540 PF07690 Major Facilitator Superfamily AM378_14545 PF13193 AMP-binding enzyme C-terminal domain AM378_14545 PF00501 AMP-binding enzyme AM378_14545 PF01553 Acyltransferase AM378_14550 PF00384 Molybdopterin oxidoreductase AM378_14550 PF01568 Molydopterin dinucleotide binding domain AM378_14560 PF00356 Bacterial regulatory proteins, lacI family AM378_14570 PF01381 Helix-turn-helix AM378_14575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AM378_14575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM378_14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_14580 PF03466 LysR substrate binding domain AM378_14585 PF03466 LysR substrate binding domain AM378_14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_14605 PF06472 ABC transporter transmembrane region 2 AM378_14605 PF00005 ABC transporter AM378_14615 PF03613 PTS system mannose/fructose/sorbose family IID component AM378_14620 PF03609 PTS system sorbose-specific iic component AM378_14625 PF03830 PTS system sorbose subfamily IIB component AM378_14630 PF08013 Tagatose 6 phosphate kinase AM378_14635 PF08220 DeoR-like helix-turn-helix domain AM378_14635 PF00455 DeoR C terminal sensor domain AM378_14640 PF07690 Major Facilitator Superfamily AM378_14650 PF00005 ABC transporter AM378_14655 PF00589 Phage integrase family AM378_14660 PF00196 Bacterial regulatory proteins, luxR family AM378_14665 PF00072 Response regulator receiver domain AM378_14665 PF00196 Bacterial regulatory proteins, luxR family AM378_14670 PF00419 Fimbrial protein AM378_14675 PF00419 Fimbrial protein AM378_14680 PF13954 PapC N-terminal domain AM378_14680 PF00577 Outer membrane usher protein AM378_14680 PF13953 PapC C-terminal domain AM378_14685 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_14685 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_14690 PF00419 Fimbrial protein AM378_14695 PF00589 Phage integrase family AM378_14705 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_14705 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_14710 PF02321 Outer membrane efflux protein AM378_14715 PF02687 FtsX-like permease family AM378_14715 PF00005 ABC transporter AM378_14715 PF12704 MacB-like periplasmic core domain AM378_14720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_14725 PF00005 ABC transporter AM378_14725 PF03412 Peptidase C39 family AM378_14725 PF00664 ABC transporter transmembrane region AM378_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_14745 PF03466 LysR substrate binding domain AM378_14750 PF02652 L-lactate permease AM378_14755 PF01070 FMN-dependent dehydrogenase AM378_14760 PF10703 MoaF N-terminal domain AM378_14760 PF17409 MoaF C-terminal domain AM378_14775 PF02028 BCCT, betaine/carnitine/choline family transporter AM378_14780 PF00440 Bacterial regulatory proteins, tetR family AM378_14780 PF13977 BetI-type transcriptional repressor, C-terminal AM378_14785 PF00005 ABC transporter AM378_14785 PF00664 ABC transporter transmembrane region AM378_14790 PF06445 GyrI-like small molecule binding domain AM378_14795 PF01476 LysM domain AM378_14795 PF01551 Peptidase family M23 AM378_14800 PF03729 Short repeat of unknown function (DUF308) AM378_14820 PF00266 Aminotransferase class-V AM378_14830 PF02028 BCCT, betaine/carnitine/choline family transporter AM378_14840 PF00152 tRNA synthetases class II (D, K and N) AM378_14840 PF01336 OB-fold nucleic acid binding domain AM378_14850 PF02272 DHHA1 domain AM378_14850 PF01368 DHH family AM378_14850 PF17768 RecJ OB domain AM378_14855 PF10411 Disulfide bond isomerase protein N-terminus AM378_14855 PF13098 Thioredoxin-like domain AM378_14860 PF02899 Phage integrase, N-terminal SAM-like domain AM378_14860 PF00589 Phage integrase family AM378_14865 PF00258 Flavodoxin AM378_14870 PF06123 Inner membrane protein CreD AM378_14875 PF00672 HAMP domain AM378_14875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_14875 PF00512 His Kinase A (phospho-acceptor) domain AM378_14880 PF00072 Response regulator receiver domain AM378_14880 PF00486 Transcriptional regulatory protein, C terminal AM378_14885 PF07254 Membrane-bound toxin component of toxin-antitoxin system AM378_14890 PF03937 Flavinator of succinate dehydrogenase AM378_14895 PF01571 Aminomethyltransferase folate-binding domain AM378_14905 PF03006 Haemolysin-III related AM378_14925 PF00294 pfkB family carbohydrate kinase AM378_14930 PF00480 ROK family AM378_14935 PF00834 Ribulose-phosphate 3 epimerase family AM378_14940 PF02653 Branched-chain amino acid transport system / permease component AM378_14945 PF02653 Branched-chain amino acid transport system / permease component AM378_14950 PF00005 ABC transporter AM378_14960 PF08220 DeoR-like helix-turn-helix domain AM378_14960 PF00455 DeoR C terminal sensor domain AM378_14965 PF00083 Sugar (and other) transporter AM378_14975 PF01425 Amidase AM378_14985 PF07729 FCD domain AM378_14985 PF00392 Bacterial regulatory proteins, gntR family AM378_15015 PF02347 Glycine cleavage system P-protein AM378_15020 PF01597 Glycine cleavage H-protein AM378_15025 PF01571 Aminomethyltransferase folate-binding domain AM378_15025 PF08669 Glycine cleavage T-protein C-terminal barrel domain AM378_15030 PF01494 FAD binding domain AM378_15035 PF01494 FAD binding domain AM378_15040 PF00557 Metallopeptidase family M24 AM378_15040 PF05195 Aminopeptidase P, N-terminal domain AM378_15045 PF03695 Uncharacterised protein family (UPF0149) AM378_15050 PF05164 Cell division protein ZapA AM378_15060 PF01812 5-formyltetrahydrofolate cyclo-ligase family AM378_15065 PF01842 ACT domain AM378_15065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM378_15065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM378_15070 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AM378_15075 PF03466 LysR substrate binding domain AM378_15075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_15080 PF04402 Protein of unknown function (DUF541) AM378_15085 PF01810 LysE type translocator AM378_15090 PF01614 Bacterial transcriptional regulator AM378_15090 PF09339 IclR helix-turn-helix domain AM378_15095 PF00005 ABC transporter AM378_15100 PF02653 Branched-chain amino acid transport system / permease component AM378_15115 PF02615 Malate/L-lactate dehydrogenase AM378_15120 PF04074 YhcH/YjgK/YiaL AM378_15125 PF07690 Major Facilitator Superfamily AM378_15130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_15130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_15135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM378_15140 PF01261 Xylose isomerase-like TIM barrel AM378_15145 PF00596 Class II Aldolase and Adducin N-terminal domain AM378_15150 PF00849 RNA pseudouridylate synthase AM378_15155 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AM378_15165 PF01717 Cobalamin-independent synthase, Catalytic domain AM378_15165 PF08267 Cobalamin-independent synthase, N-terminal domain AM378_15170 PF07690 Major Facilitator Superfamily AM378_15175 PF05552 Conserved TM helix AM378_15175 PF00924 Mechanosensitive ion channel AM378_15185 PF01116 Fructose-bisphosphate aldolase class-II AM378_15190 PF00162 Phosphoglycerate kinase AM378_15195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AM378_15195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM378_15200 PF00005 ABC transporter AM378_15200 PF08402 TOBE domain AM378_15205 PF00528 Binding-protein-dependent transport system inner membrane component AM378_15220 PF05525 Branched-chain amino acid transport protein AM378_15225 PF00456 Transketolase, thiamine diphosphate binding domain AM378_15225 PF02779 Transketolase, pyrimidine binding domain AM378_15225 PF02780 Transketolase, C-terminal domain AM378_15230 PF01435 Peptidase family M48 AM378_15235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_15235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_15235 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_15240 PF00171 Aldehyde dehydrogenase family AM378_15245 PF03447 Homoserine dehydrogenase, NAD binding domain AM378_15245 PF01958 Domain of unknown function DUF108 AM378_15255 PF00561 alpha/beta hydrolase fold AM378_15270 PF14759 Reductase C-terminal AM378_15270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_15280 PF09339 IclR helix-turn-helix domain AM378_15280 PF01614 Bacterial transcriptional regulator AM378_15290 PF00355 Rieske [2Fe-2S] domain AM378_15300 PF00355 Rieske [2Fe-2S] domain AM378_15305 PF07690 Major Facilitator Superfamily AM378_15310 PF01848 Hok/gef family AM378_15315 PF00491 Arginase family AM378_15320 PF17944 Arginine decarboxylase C-terminal helical extension AM378_15320 PF17810 Arginine decarboxylase helical bundle domain AM378_15320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AM378_15330 PF00438 S-adenosylmethionine synthetase, N-terminal domain AM378_15330 PF02773 S-adenosylmethionine synthetase, C-terminal domain AM378_15330 PF02772 S-adenosylmethionine synthetase, central domain AM378_15345 PF01032 FecCD transport family AM378_15350 PF01497 Periplasmic binding protein AM378_15355 PF00005 ABC transporter AM378_15360 PF07715 TonB-dependent Receptor Plug Domain AM378_15360 PF00593 TonB dependent receptor AM378_15365 PF14814 Bifunctional transglycosylase second domain AM378_15365 PF00905 Penicillin binding protein transpeptidase domain AM378_15365 PF00912 Transglycosylase AM378_15365 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal AM378_15370 PF08482 ATP-dependent helicase C-terminal AM378_15370 PF00271 Helicase conserved C-terminal domain AM378_15370 PF04408 Helicase associated domain (HA2) AM378_15370 PF00270 DEAD/DEAH box helicase AM378_15375 PF02834 LigT like Phosphoesterase AM378_15380 PF17746 SfsA N-terminal OB domain AM378_15380 PF03749 Sugar fermentation stimulation protein RE domain AM378_15390 PF01258 Prokaryotic dksA/traR C4-type zinc finger AM378_15395 PF00749 tRNA synthetases class I (E and Q), catalytic domain AM378_15400 PF12627 Probable RNA and SrmB- binding site of polymerase A AM378_15400 PF12626 Polymerase A arginine-rich C-terminus AM378_15400 PF01743 Poly A polymerase head domain AM378_15405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AM378_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_15410 PF08521 Two-component sensor kinase N-terminal AM378_15410 PF00512 His Kinase A (phospho-acceptor) domain AM378_15415 PF00072 Response regulator receiver domain AM378_15415 PF00486 Transcriptional regulatory protein, C terminal AM378_15420 PF02548 Ketopantoate hydroxymethyltransferase AM378_15425 PF02569 Pantoate-beta-alanine ligase AM378_15430 PF02261 Aspartate decarboxylase AM378_15435 PF01522 Polysaccharide deacetylase AM378_15440 PF01061 ABC-2 type transporter AM378_15445 PF00005 ABC transporter AM378_15450 PF00484 Carbonic anhydrase AM378_15455 PF00156 Phosphoribosyl transferase domain AM378_15460 PF00394 Multicopper oxidase AM378_15460 PF07732 Multicopper oxidase AM378_15460 PF07731 Multicopper oxidase AM378_15460 PF10518 TAT (twin-arginine translocation) pathway signal sequence AM378_15465 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) AM378_15470 PF17284 Spermidine synthase tetramerisation domain AM378_15475 PF02675 S-adenosylmethionine decarboxylase AM378_15480 PF06062 Uncharacterised protein family (UPF0231) AM378_15485 PF11791 Aconitate B N-terminal domain AM378_15485 PF06434 Aconitate hydratase 2 N-terminus AM378_15485 PF00330 Aconitase family (aconitate hydratase) AM378_15490 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_15490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM378_15495 PF02817 e3 binding domain AM378_15495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AM378_15495 PF00364 Biotin-requiring enzyme AM378_15500 PF17831 Pyruvate dehydrogenase E1 component middle domain AM378_15500 PF00456 Transketolase, thiamine diphosphate binding domain AM378_15505 PF00392 Bacterial regulatory proteins, gntR family AM378_15505 PF07729 FCD domain AM378_15510 PF00324 Amino acid permease AM378_15515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_15515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_15515 PF00034 Cytochrome c AM378_15520 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_15520 PF01799 [2Fe-2S] binding domain AM378_15525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AM378_15525 PF00034 Cytochrome c AM378_15525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AM378_15535 PF02625 XdhC and CoxI family AM378_15535 PF13478 XdhC Rossmann domain AM378_15540 PF06445 GyrI-like small molecule binding domain AM378_15540 PF12833 Helix-turn-helix domain AM378_15545 PF05681 Fumarate hydratase (Fumerase) AM378_15545 PF05683 Fumarase C-terminus AM378_15550 PF10263 SprT-like family AM378_15550 PF17283 SprT-like zinc ribbon domain AM378_15555 PF04231 Endonuclease I AM378_15560 PF04452 RNA methyltransferase AM378_15565 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AM378_15565 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AM378_15570 PF02622 Uncharacterized ACR, COG1678 AM378_15575 PF03652 Holliday junction resolvase AM378_15580 PF00437 Type II/IV secretion system protein AM378_15585 PF01168 Alanine racemase, N-terminal domain AM378_15590 PF03807 NADP oxidoreductase coenzyme F420-dependent AM378_15590 PF14748 Pyrroline-5-carboxylate reductase dimerisation AM378_15595 PF02325 YGGT family AM378_15600 PF02594 Uncharacterised ACR, YggU family COG1872 AM378_15605 PF01725 Ham1 family AM378_15610 PF06969 HemN C-terminal domain AM378_15610 PF04055 Radical SAM superfamily AM378_15620 PF11101 Protein of unknown function (DUF2884) AM378_15625 PF04960 Glutaminase AM378_15630 PF04320 Protein with unknown function (DUF469) AM378_15635 PF02390 Putative methyltransferase AM378_15640 PF14815 NUDIX domain AM378_15640 PF00633 Helix-hairpin-helix motif AM378_15640 PF00730 HhH-GPD superfamily base excision DNA repair protein AM378_15645 PF04362 Bacterial Fe(2+) trafficking AM378_15650 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AM378_15650 PF01464 Transglycosylase SLT domain AM378_15655 PF01276 Orn/Lys/Arg decarboxylase, major domain AM378_15655 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM378_15655 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM378_15680 PF00419 Fimbrial protein AM378_15690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_15690 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_15700 PF13954 PapC N-terminal domain AM378_15700 PF00577 Outer membrane usher protein AM378_15700 PF13953 PapC C-terminal domain AM378_15710 PF00419 Fimbrial protein AM378_15730 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM378_15740 PF00756 Putative esterase AM378_15745 PF00583 Acetyltransferase (GNAT) family AM378_15770 PF14489 QueF-like protein AM378_15770 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AM378_15775 PF05506 Domain of unknown function (DUF756) AM378_15775 PF04185 Phosphoesterase family AM378_15785 PF00593 TonB dependent receptor AM378_15785 PF07715 TonB-dependent Receptor Plug Domain AM378_15785 PF07660 Secretin and TonB N terminus short domain AM378_15790 PF03466 LysR substrate binding domain AM378_15790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_15795 PF01546 Peptidase family M20/M25/M40 AM378_15795 PF07687 Peptidase dimerisation domain AM378_15800 PF01546 Peptidase family M20/M25/M40 AM378_15805 PF03806 AbgT putative transporter family AM378_15810 PF00294 pfkB family carbohydrate kinase AM378_15820 PF02378 Phosphotransferase system, EIIC AM378_15820 PF00367 phosphotransferase system, EIIB AM378_15825 PF08244 Glycosyl hydrolases family 32 C terminal AM378_15825 PF00251 Glycosyl hydrolases family 32 N-terminal domain AM378_15830 PF00356 Bacterial regulatory proteins, lacI family AM378_15830 PF13407 Periplasmic binding protein domain AM378_15835 PF02472 Biopolymer transport protein ExbD/TolR AM378_15840 PF01618 MotA/TolQ/ExbB proton channel family AM378_15845 PF01053 Cys/Met metabolism PLP-dependent enzyme AM378_15850 PF09335 SNARE associated Golgi protein AM378_15855 PF06719 AraC-type transcriptional regulator N-terminus AM378_15855 PF12833 Helix-turn-helix domain AM378_15860 PF00465 Iron-containing alcohol dehydrogenase AM378_15865 PF00248 Aldo/keto reductase family AM378_15870 PF01464 Transglycosylase SLT domain AM378_15875 PF11842 Domain of unknown function (DUF3362) AM378_15875 PF08497 Radical SAM N-terminal AM378_15875 PF04055 Radical SAM superfamily AM378_15890 PF00294 pfkB family carbohydrate kinase AM378_15895 PF03825 Nucleoside H+ symporter AM378_15900 PF01048 Phosphorylase superfamily AM378_15905 PF03466 LysR substrate binding domain AM378_15905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_15910 PF07731 Multicopper oxidase AM378_15910 PF07732 Multicopper oxidase AM378_15915 PF01553 Acyltransferase AM378_15920 PF00521 DNA gyrase/topoisomerase IV, subunit A AM378_15920 PF03989 DNA gyrase C-terminal domain, beta-propeller AM378_15925 PF02525 Flavodoxin-like fold AM378_15930 PF03992 Antibiotic biosynthesis monooxygenase AM378_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_15935 PF03466 LysR substrate binding domain AM378_15940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_15940 PF00986 DNA gyrase B subunit, carboxyl terminus AM378_15940 PF00204 DNA gyrase B AM378_15940 PF01751 Toprim domain AM378_15945 PF05728 Uncharacterised protein family (UPF0227) AM378_15950 PF00149 Calcineurin-like phosphoesterase AM378_15955 PF06853 Protein of unknown function (DUF1249) AM378_15960 PF00293 NUDIX domain AM378_15965 PF02321 Outer membrane efflux protein AM378_15970 PF00989 PAS fold AM378_15970 PF00158 Sigma-54 interaction domain AM378_15970 PF02954 Bacterial regulatory protein, Fis family AM378_15975 PF05524 PEP-utilising enzyme, N-terminal AM378_15975 PF03610 PTS system fructose IIA component AM378_15975 PF00391 PEP-utilising enzyme, mobile domain AM378_15975 PF00381 PTS HPr component phosphorylation site AM378_15980 PF02734 DAK2 domain AM378_15985 PF02733 Dak1 domain AM378_15990 PF00465 Iron-containing alcohol dehydrogenase AM378_15995 PF06693 Protein of unknown function (DUF1190) AM378_16000 PF03738 Glutathionylspermidine synthase preATP-grasp AM378_16005 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AM378_16010 PF00245 Alkaline phosphatase AM378_16015 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AM378_16020 PF04380 Membrane fusogenic activity AM378_16025 PF01467 Cytidylyltransferase-like AM378_16025 PF00294 pfkB family carbohydrate kinase AM378_16030 PF08335 GlnD PII-uridylyltransferase AM378_16030 PF03710 Glutamate-ammonia ligase adenylyltransferase AM378_16035 PF01928 CYTH domain AM378_16040 PF08239 Bacterial SH3 domain AM378_16045 PF12627 Probable RNA and SrmB- binding site of polymerase A AM378_16045 PF01743 Poly A polymerase head domain AM378_16045 PF01966 HD domain AM378_16050 PF02673 Bacitracin resistance protein BacA AM378_16055 PF02152 Dihydroneopterin aldolase AM378_16060 PF02660 Glycerol-3-phosphate acyltransferase AM378_16065 PF00814 Glycoprotease family AM378_16070 PF01165 Ribosomal protein S21 AM378_16075 PF10410 DnaB-helicase binding domain of primase AM378_16075 PF01807 CHC2 zinc finger AM378_16075 PF08278 DNA primase DnaG DnaB-binding AM378_16075 PF08275 DNA primase catalytic core, N-terminal domain AM378_16080 PF04539 Sigma-70 region 3 AM378_16080 PF04545 Sigma-70, region 4 AM378_16080 PF04542 Sigma-70 region 2 AM378_16080 PF00140 Sigma-70 factor, region 1.2 AM378_16080 PF03979 Sigma-70 factor, region 1.1 AM378_16080 PF04546 Sigma-70, non-essential region AM378_16085 PF03167 Uracil DNA glycosylase superfamily AM378_16095 PF04606 Ogr/Delta-like zinc finger AM378_16135 PF02413 Caudovirales tail fibre assembly protein, lambda gpK AM378_16140 PF08400 Prophage tail fibre N-terminal AM378_16140 PF07484 Phage Tail Collar Domain AM378_16140 PF03335 Phage tail fibre repeat AM378_16260 PF05840 Bacteriophage replication gene A protein (GPA) AM378_16270 PF00929 Exonuclease AM378_16300 PF06892 Phage regulatory protein CII (CP76) AM378_16310 PF07022 Bacteriophage CI repressor helix-turn-helix domain AM378_16310 PF16452 Bacteriophage CI repressor C-terminal domain AM378_16315 PF02899 Phage integrase, N-terminal SAM-like domain AM378_16315 PF00589 Phage integrase family AM378_16320 PF00583 Acetyltransferase (GNAT) family AM378_16330 PF02798 Glutathione S-transferase, N-terminal domain AM378_16330 PF14834 Glutathione S-transferase, C-terminal domain AM378_16340 PF00171 Aldehyde dehydrogenase family AM378_16345 PF00202 Aminotransferase class-III AM378_16350 PF00155 Aminotransferase class I and II AM378_16350 PF00392 Bacterial regulatory proteins, gntR family AM378_16355 PF16326 ABC transporter C-terminal domain AM378_16355 PF12848 ABC transporter AM378_16355 PF00005 ABC transporter AM378_16360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AM378_16360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_16365 PF05175 Methyltransferase small domain AM378_16370 PF01863 Protein of unknown function DUF45 AM378_16375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_16380 PF00117 Glutamine amidotransferase class-I AM378_16385 PF03741 Integral membrane protein TerC family AM378_16390 PF00375 Sodium:dicarboxylate symporter family AM378_16395 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AM378_16395 PF08666 SAF domain AM378_16400 PF02614 Glucuronate isomerase AM378_16405 PF07690 Major Facilitator Superfamily AM378_16410 PF07729 FCD domain AM378_16410 PF00392 Bacterial regulatory proteins, gntR family AM378_16420 PF09335 SNARE associated Golgi protein AM378_16425 PF13721 SecD export protein N-terminal TM region AM378_16435 PF05957 Bacterial protein of unknown function (DUF883) AM378_16440 PF07332 Putative Actinobacterial Holin-X, holin superfamily III AM378_16445 PF13997 YqjK-like protein AM378_16450 PF07681 DoxX AM378_16455 PF13409 Glutathione S-transferase, N-terminal domain AM378_16460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_16460 PF03466 LysR substrate binding domain AM378_16465 PF02678 Pirin AM378_16465 PF17954 Quercetinase C-terminal cupin domain AM378_16475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM378_16480 PF04348 LppC putative lipoprotein AM378_16485 PF02021 Uncharacterised protein family UPF0102 AM378_16490 PF13580 SIS domain AM378_16495 PF04972 BON domain AM378_16500 PF00912 Transglycosylase AM378_16510 PF18415 Histidine kinase receptor ArcB trans-membrane domain AM378_16510 PF00989 PAS fold AM378_16510 PF01627 Hpt domain AM378_16510 PF00512 His Kinase A (phospho-acceptor) domain AM378_16510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_16510 PF00072 Response regulator receiver domain AM378_16520 PF04055 Radical SAM superfamily AM378_16520 PF16199 Radical_SAM C-terminal domain AM378_16530 PF01493 GXGXG motif AM378_16530 PF01645 Conserved region in glutamate synthase AM378_16530 PF00310 Glutamine amidotransferases class-II AM378_16530 PF04898 Glutamate synthase central domain AM378_16535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AM378_16535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_16545 PF04386 Stringent starvation protein B AM378_16550 PF02798 Glutathione S-transferase, N-terminal domain AM378_16550 PF00043 Glutathione S-transferase, C-terminal domain AM378_16560 PF00380 Ribosomal protein S9/S16 AM378_16565 PF00572 Ribosomal protein L13 AM378_16570 PF03969 AFG1-like ATPase AM378_16575 PF06295 Protein of unknown function (DUF1043) AM378_16580 PF00595 PDZ domain AM378_16580 PF13180 PDZ domain AM378_16585 PF13180 PDZ domain AM378_16590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AM378_16595 PF01722 BolA-like protein AM378_16600 PF13466 STAS domain AM378_16605 PF05494 MlaC protein AM378_16610 PF02470 MlaD protein AM378_16615 PF02405 Permease MlaE AM378_16620 PF00005 ABC transporter AM378_16625 PF01699 Sodium/calcium exchanger protein AM378_16630 PF00571 CBS domain AM378_16630 PF01380 SIS domain AM378_16640 PF06835 Lipopolysaccharide-assembly, LptC-related AM378_16645 PF03968 OstA-like protein AM378_16650 PF00005 ABC transporter AM378_16650 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM378_16655 PF04552 Sigma-54, DNA binding domain AM378_16655 PF00309 Sigma-54 factor, Activator interacting domain (AID) AM378_16655 PF04963 Sigma-54 factor, core binding domain AM378_16660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM378_16665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM378_16670 PF03668 P-loop ATPase protein family AM378_16675 PF00381 PTS HPr component phosphorylation site AM378_16680 PF00874 PRD domain AM378_16680 PF05043 Mga helix-turn-helix domain AM378_16680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM378_16680 PF08279 HTH domain AM378_16690 PF07071 KDGP aldolase AM378_16695 PF03841 L-seryl-tRNA selenium transferase AM378_16700 PF01979 Amidohydrolase family AM378_16730 PF01272 Transcription elongation factor, GreA/GreB, C-term AM378_16730 PF14760 Rnk N-terminus AM378_16740 PF02911 Formyl transferase, C-terminal domain AM378_16740 PF00551 Formyl transferase AM378_16750 PF12833 Helix-turn-helix domain AM378_16750 PF02311 AraC-like ligand binding domain AM378_16755 PF07361 Cytochrome b562 AM378_16760 PF01523 Putative modulator of DNA gyrase AM378_16775 PF04751 Protein of unknown function (DUF615) AM378_16780 PF01337 Barstar (barnase inhibitor) AM378_16785 PF00545 ribonuclease AM378_16790 PF04632 Fusaric acid resistance protein family AM378_16795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AM378_16800 PF07869 Protein of unknown function (DUF1656) AM378_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_16805 PF03466 LysR substrate binding domain AM378_16820 PF01156 Inosine-uridine preferring nucleoside hydrolase AM378_16830 PF02611 CDP-diacylglycerol pyrophosphatase AM378_16835 PF01523 Putative modulator of DNA gyrase AM378_16840 PF00795 Carbon-nitrogen hydrolase AM378_16845 PF13116 Protein of unknown function AM378_16845 PF13502 AsmA-like C-terminal region AM378_16850 PF00575 S1 RNA binding domain AM378_16850 PF10150 Ribonuclease E/G family AM378_16855 PF02545 Maf-like protein AM378_16860 PF04093 rod shape-determining protein MreD AM378_16865 PF04085 rod shape-determining protein MreC AM378_16875 PF17157 Gammaproteobacterial periplasmic sensor domain AM378_16875 PF00563 EAL domain AM378_16875 PF00990 Diguanylate cyclase, GGDEF domain AM378_16880 PF00107 Zinc-binding dehydrogenase AM378_16880 PF08240 Alcohol dehydrogenase GroES-like domain AM378_16885 PF00174 Oxidoreductase molybdopterin binding domain AM378_16890 PF01794 Ferric reductase like transmembrane component AM378_16895 PF01220 Dehydroquinase class II AM378_16900 PF00364 Biotin-requiring enzyme AM378_16905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM378_16905 PF02785 Biotin carboxylase C-terminal domain AM378_16905 PF00289 Biotin carboxylase, N-terminal domain AM378_16910 PF06196 Protein of unknown function (DUF997) AM378_16915 PF00474 Sodium:solute symporter family AM378_16925 PF01207 Dihydrouridine synthase (Dus) AM378_16930 PF02954 Bacterial regulatory protein, Fis family AM378_16945 PF03279 Bacterial lipid A biosynthesis acyltransferase AM378_16950 PF06418 CTP synthase N-terminus AM378_16950 PF00117 Glutamine amidotransferase class-I AM378_16955 PF00501 AMP-binding enzyme AM378_16955 PF00550 Phosphopantetheine attachment site AM378_16955 PF13193 AMP-binding enzyme C-terminal domain AM378_16955 PF00668 Condensation domain AM378_16955 PF00975 Thioesterase domain AM378_16965 PF03788 LrgA family AM378_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_16970 PF03466 LysR substrate binding domain AM378_16975 PF00999 Sodium/hydrogen exchanger family AM378_16980 PF00860 Permease family AM378_16990 PF02798 Glutathione S-transferase, N-terminal domain AM378_16990 PF14497 Glutathione S-transferase, C-terminal domain AM378_17010 PF00436 Single-strand binding protein family AM378_17020 PF17760 UvrA interaction domain AM378_17020 PF17755 UvrA DNA-binding domain AM378_17020 PF00005 ABC transporter AM378_17025 PF00107 Zinc-binding dehydrogenase AM378_17025 PF08240 Alcohol dehydrogenase GroES-like domain AM378_17030 PF14602 Hexapeptide repeat of succinyl-transferase AM378_17030 PF12464 Maltose acetyltransferase AM378_17035 PF04237 YjbR AM378_17040 PF01894 Uncharacterised protein family UPF0047 AM378_17045 PF00155 Aminotransferase class I and II AM378_17050 PF01037 Lrp/AsnC ligand binding domain AM378_17055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_17060 PF00842 Alanine racemase, C-terminal domain AM378_17060 PF01168 Alanine racemase, N-terminal domain AM378_17065 PF00772 DnaB-like helicase N terminal domain AM378_17065 PF03796 DnaB-like helicase C terminal domain AM378_17070 PF08240 Alcohol dehydrogenase GroES-like domain AM378_17070 PF00107 Zinc-binding dehydrogenase AM378_17075 PF09583 Phage shock protein G (Phageshock_PspG) AM378_17080 PF01207 Dihydrouridine synthase (Dus) AM378_17090 PF01475 Ferric uptake regulator family AM378_17095 PF05532 CsbD-like AM378_17100 PF01554 MatE AM378_17105 PF01726 LexA DNA binding domain AM378_17105 PF00717 Peptidase S24-like AM378_17110 PF01219 Prokaryotic diacylglycerol kinase AM378_17115 PF01553 Acyltransferase AM378_17120 PF01040 UbiA prenyltransferase family AM378_17125 PF04345 Chorismate lyase AM378_17130 PF07690 Major Facilitator Superfamily AM378_17130 PF00083 Sugar (and other) transporter AM378_17135 PF00356 Bacterial regulatory proteins, lacI family AM378_17145 PF07148 Maltose operon periplasmic protein precursor (MalM) AM378_17150 PF02264 LamB porin AM378_17155 PF00005 ABC transporter AM378_17155 PF17912 MalK OB fold domain AM378_17160 PF00128 Alpha amylase, catalytic domain AM378_17160 PF16657 Maltogenic Amylase, C-terminal domain AM378_17165 PF01547 Bacterial extracellular solute-binding protein AM378_17170 PF14785 Maltose transport system permease protein MalF P2 domain AM378_17170 PF00528 Binding-protein-dependent transport system inner membrane component AM378_17175 PF00528 Binding-protein-dependent transport system inner membrane component AM378_17180 PF06146 Phosphate-starvation-inducible E AM378_17185 PF14052 Capsule assembly protein Wzi AM378_17190 PF00342 Phosphoglucose isomerase AM378_17200 PF01842 ACT domain AM378_17200 PF00696 Amino acid kinase family AM378_17205 PF01758 Sodium Bile acid symporter family AM378_17210 PF17287 POTRA domain AM378_17210 PF08479 POTRA domain, ShlB-type AM378_17210 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM378_17215 PF05860 haemagglutination activity domain AM378_17215 PF13332 Hemagglutinin repeat AM378_17220 PF02690 Na+/Pi-cotransporter AM378_17225 PF00005 ABC transporter AM378_17225 PF08402 TOBE domain AM378_17250 PF00392 Bacterial regulatory proteins, gntR family AM378_17250 PF07702 UTRA domain AM378_17255 PF02607 B12 binding domain AM378_17255 PF02310 B12 binding domain AM378_17255 PF02965 Vitamin B12 dependent methionine synthase, activation domain AM378_17255 PF02574 Homocysteine S-methyltransferase AM378_17255 PF00809 Pterin binding enzyme AM378_17260 PF09339 IclR helix-turn-helix domain AM378_17260 PF01614 Bacterial transcriptional regulator AM378_17265 PF01202 Shikimate kinase AM378_17270 PF02447 GntP family permease AM378_17275 PF00920 Dehydratase family AM378_17280 PF01081 KDPG and KHG aldolase AM378_17285 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AM378_17290 PF00463 Isocitrate lyase family AM378_17295 PF01274 Malate synthase AM378_17300 PF04204 Homoserine O-succinyltransferase AM378_17335 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_17340 PF01488 Shikimate / quinate 5-dehydrogenase AM378_17340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AM378_17340 PF08501 Shikimate dehydrogenase substrate binding domain AM378_17345 PF01300 Telomere recombination AM378_17350 PF01396 Topoisomerase DNA binding C4 zinc finger AM378_17355 PF04361 Protein of unknown function (DUF494) AM378_17360 PF17782 DprA winged helix domain AM378_17360 PF02481 DNA recombination-mediator protein A AM378_17365 PF01327 Polypeptide deformylase AM378_17370 PF00551 Formyl transferase AM378_17370 PF02911 Formyl transferase, C-terminal domain AM378_17375 PF01029 NusB family AM378_17375 PF01189 16S rRNA methyltransferase RsmB/F AM378_17380 PF02080 TrkA-C domain AM378_17380 PF02254 TrkA-N domain AM378_17385 PF01741 Large-conductance mechanosensitive channel, MscL AM378_17390 PF03889 Alternative ribosome-rescue factor A AM378_17395 PF13411 MerR HTH family regulatory protein AM378_17400 PF09350 Domain of unknown function (DUF1992) AM378_17405 PF01196 Ribosomal protein L17 AM378_17410 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AM378_17410 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AM378_17410 PF01000 RNA polymerase Rpb3/RpoA insert domain AM378_17415 PF00163 Ribosomal protein S4/S9 N-terminal domain AM378_17415 PF01479 S4 domain AM378_17420 PF00411 Ribosomal protein S11 AM378_17425 PF00416 Ribosomal protein S13/S18 AM378_17430 PF00444 Ribosomal protein L36 AM378_17435 PF00344 SecY translocase AM378_17440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AM378_17445 PF00327 Ribosomal protein L30p/L7e AM378_17450 PF03719 Ribosomal protein S5, C-terminal domain AM378_17450 PF00333 Ribosomal protein S5, N-terminal domain AM378_17455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AM378_17460 PF00347 Ribosomal protein L6 AM378_17465 PF00410 Ribosomal protein S8 AM378_17470 PF00253 Ribosomal protein S14p/S29e AM378_17475 PF00673 ribosomal L5P family C-terminus AM378_17475 PF00281 Ribosomal protein L5 AM378_17480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AM378_17480 PF00467 KOW motif AM378_17485 PF00238 Ribosomal protein L14p/L23e AM378_17490 PF00366 Ribosomal protein S17 AM378_17495 PF00831 Ribosomal L29 protein AM378_17500 PF00252 Ribosomal protein L16p/L10e AM378_17505 PF00189 Ribosomal protein S3, C-terminal domain AM378_17505 PF07650 KH domain AM378_17510 PF00237 Ribosomal protein L22p/L17e AM378_17515 PF00203 Ribosomal protein S19 AM378_17520 PF00181 Ribosomal Proteins L2, RNA binding domain AM378_17520 PF03947 Ribosomal Proteins L2, C-terminal domain AM378_17525 PF00276 Ribosomal protein L23 AM378_17530 PF00573 Ribosomal protein L4/L1 family AM378_17535 PF00297 Ribosomal protein L3 AM378_17540 PF00338 Ribosomal protein S10p/S20e AM378_17545 PF00210 Ferritin-like domain AM378_17550 PF04324 BFD-like [2Fe-2S] binding domain AM378_17555 PF03143 Elongation factor Tu C-terminal domain AM378_17555 PF03144 Elongation factor Tu domain 2 AM378_17555 PF00009 Elongation factor Tu GTP binding domain AM378_17560 PF00009 Elongation factor Tu GTP binding domain AM378_17560 PF03144 Elongation factor Tu domain 2 AM378_17560 PF03764 Elongation factor G, domain IV AM378_17560 PF14492 Elongation Factor G, domain II AM378_17560 PF00679 Elongation factor G C-terminus AM378_17565 PF00177 Ribosomal protein S7p/S5e AM378_17570 PF00164 Ribosomal protein S12/S23 AM378_17575 PF04077 DsrH like protein AM378_17580 PF02635 DsrE/DsrF-like family AM378_17585 PF02635 DsrE/DsrF-like family AM378_17590 PF08348 YheO-like PAS domain AM378_17590 PF13309 HTH domain AM378_17595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_17595 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM378_17600 PF04102 SlyX AM378_17605 PF00155 Aminotransferase class I and II AM378_17610 PF03553 Na+/H+ antiporter family AM378_17615 PF00356 Bacterial regulatory proteins, lacI family AM378_17620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_17625 PF09526 Probable metal-binding protein (DUF2387) AM378_17630 PF00999 Sodium/hydrogen exchanger family AM378_17630 PF02254 TrkA-N domain AM378_17635 PF02525 Flavodoxin-like fold AM378_17640 PF12848 ABC transporter AM378_17640 PF00005 ABC transporter AM378_17645 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AM378_17650 PF00528 Binding-protein-dependent transport system inner membrane component AM378_17655 PF00005 ABC transporter AM378_17660 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AM378_17665 PF02567 Phenazine biosynthesis-like protein AM378_17675 PF00561 alpha/beta hydrolase fold AM378_17680 PF06794 Uncharacterised protein family (UPF0270) AM378_17685 PF00485 Phosphoribulokinase / Uridine kinase family AM378_17690 PF02566 OsmC-like protein AM378_17695 PF00027 Cyclic nucleotide-binding domain AM378_17695 PF13545 Crp-like helix-turn-helix domain AM378_17700 PF12805 FUSC-like inner membrane protein yccS AM378_17705 PF00202 Aminotransferase class-III AM378_17710 PF00117 Glutamine amidotransferase class-I AM378_17715 PF05872 Bacterial protein of unknown function (DUF853) AM378_17730 PF00072 Response regulator receiver domain AM378_17730 PF04397 LytTr DNA-binding domain AM378_17735 PF07694 5TMR of 5TMR-LYT AM378_17735 PF06580 Histidine kinase AM378_17740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AM378_17750 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AM378_17755 PF02056 Family 4 glycosyl hydrolase AM378_17755 PF11975 Family 4 glycosyl hydrolase C-terminal domain AM378_17760 PF00356 Bacterial regulatory proteins, lacI family AM378_17765 PF07690 Major Facilitator Superfamily AM378_17770 PF07969 Amidohydrolase family AM378_17775 PF18267 Rubredoxin NAD+ reductase C-terminal domain AM378_17775 PF04324 BFD-like [2Fe-2S] binding domain AM378_17775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM378_17775 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_17775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM378_17780 PF13806 Rieske-like [2Fe-2S] domain AM378_17785 PF01226 Formate/nitrite transporter AM378_17790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM378_17790 PF10414 Sirohaem synthase dimerisation region AM378_17790 PF14824 Sirohaem biosynthesis protein central AM378_17795 PF00579 tRNA synthetases class I (W and Y) AM378_17800 PF13419 Haloacid dehalogenase-like hydrolase AM378_17805 PF00834 Ribulose-phosphate 3 epimerase family AM378_17810 PF02086 D12 class N6 adenine-specific DNA methyltransferase AM378_17815 PF05036 Sporulation related domain AM378_17820 PF01761 3-dehydroquinate synthase AM378_17825 PF01202 Shikimate kinase AM378_17830 PF03958 Bacterial type II/III secretion system short domain AM378_17830 PF00263 Bacterial type II and III secretion system protein AM378_17855 PF00912 Transglycosylase AM378_17855 PF17092 Penicillin-binding protein OB-like domain AM378_17855 PF00905 Penicillin binding protein transpeptidase domain AM378_17860 PF00293 NUDIX domain AM378_17865 PF07095 Intracellular growth attenuator protein IgaA AM378_17870 PF13419 Haloacid dehalogenase-like hydrolase AM378_17875 PF01479 S4 domain AM378_17880 PF01430 Hsp33 protein AM378_17885 PF01293 Phosphoenolpyruvate carboxykinase AM378_17895 PF01850 PIN domain AM378_17900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_17900 PF00672 HAMP domain AM378_17900 PF00512 His Kinase A (phospho-acceptor) domain AM378_17905 PF00486 Transcriptional regulatory protein, C terminal AM378_17905 PF00072 Response regulator receiver domain AM378_17915 PF00226 DnaJ domain AM378_17915 PF01556 DnaJ C terminal domain AM378_17920 PF01272 Transcription elongation factor, GreA/GreB, C-term AM378_17920 PF03449 Transcription elongation factor, N-terminal AM378_17925 PF16921 Tex protein YqgF-like domain AM378_17925 PF00575 S1 RNA binding domain AM378_17925 PF09371 Tex-like protein N-terminal domain AM378_17925 PF17674 HHH domain AM378_17930 PF04023 FeoA domain AM378_17935 PF02421 Ferrous iron transport protein B AM378_17935 PF07664 Ferrous iron transport protein B C terminus AM378_17935 PF07670 Nucleoside recognition AM378_17935 PF17910 FeoB cytosolic helical domain AM378_17940 PF09012 FeoC like transcriptional regulator AM378_17950 PF00561 alpha/beta hydrolase fold AM378_17955 PF00156 Phosphoribosyl transferase domain AM378_17960 PF01106 NifU-like domain AM378_17960 PF01521 Iron-sulphur cluster biosynthesis AM378_17965 PF02446 4-alpha-glucanotransferase AM378_17970 PF00343 Carbohydrate phosphorylase AM378_17975 PF00196 Bacterial regulatory proteins, luxR family AM378_17975 PF17874 MalT-like TPR region AM378_17980 PF00596 Class II Aldolase and Adducin N-terminal domain AM378_17985 PF01261 Xylose isomerase-like TIM barrel AM378_17990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AM378_17995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM378_18000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM378_18005 PF03611 PTS system sugar-specific permease component AM378_18015 PF00455 DeoR C terminal sensor domain AM378_18015 PF08220 DeoR-like helix-turn-helix domain AM378_18020 PF00581 Rhodanese-like domain AM378_18025 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AM378_18025 PF01694 Rhomboid family AM378_18030 PF08220 DeoR-like helix-turn-helix domain AM378_18030 PF00455 DeoR C terminal sensor domain AM378_18035 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AM378_18035 PF01266 FAD dependent oxidoreductase AM378_18040 PF00343 Carbohydrate phosphorylase AM378_18045 PF00534 Glycosyl transferases group 1 AM378_18045 PF08323 Starch synthase catalytic domain AM378_18050 PF00483 Nucleotidyl transferase AM378_18055 PF18390 Glycogen debranching enzyme C-terminal domain AM378_18055 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM378_18055 PF00128 Alpha amylase, catalytic domain AM378_18060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AM378_18060 PF02806 Alpha amylase, C-terminal all-beta domain AM378_18060 PF00128 Alpha amylase, catalytic domain AM378_18065 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM378_18065 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM378_18070 PF01914 MarC family integral membrane protein AM378_18075 PF01202 Shikimate kinase AM378_18080 PF02447 GntP family permease AM378_18085 PF00356 Bacterial regulatory proteins, lacI family AM378_18085 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM378_18090 PF17954 Quercetinase C-terminal cupin domain AM378_18090 PF02678 Pirin AM378_18095 PF00583 Acetyltransferase (GNAT) family AM378_18100 PF03576 Peptidase family S58 AM378_18105 PF01261 Xylose isomerase-like TIM barrel AM378_18110 PF01261 Xylose isomerase-like TIM barrel AM378_18115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AM378_18115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AM378_18120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_18120 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_18120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_18125 PF00294 pfkB family carbohydrate kinase AM378_18145 PF04962 KduI/IolB family AM378_18150 PF00171 Aldehyde dehydrogenase family AM378_18155 PF00083 Sugar (and other) transporter AM378_18165 PF03649 Uncharacterised protein family (UPF0014) AM378_18170 PF00005 ABC transporter AM378_18180 PF00419 Fimbrial protein AM378_18190 PF13954 PapC N-terminal domain AM378_18190 PF13953 PapC C-terminal domain AM378_18190 PF00577 Outer membrane usher protein AM378_18195 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_18195 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_18200 PF00419 Fimbrial protein AM378_18215 PF00196 Bacterial regulatory proteins, luxR family AM378_18220 PF13533 Biotin-lipoyl like AM378_18225 PF16884 N-terminal domain of oxidoreductase AM378_18225 PF00107 Zinc-binding dehydrogenase AM378_18235 PF07690 Major Facilitator Superfamily AM378_18240 PF00501 AMP-binding enzyme AM378_18240 PF13193 AMP-binding enzyme C-terminal domain AM378_18240 PF00668 Condensation domain AM378_18240 PF00550 Phosphopantetheine attachment site AM378_18240 PF00975 Thioesterase domain AM378_18245 PF00550 Phosphopantetheine attachment site AM378_18245 PF00668 Condensation domain AM378_18245 PF16197 Ketoacyl-synthetase C-terminal extension AM378_18245 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_18245 PF00698 Acyl transferase domain AM378_18245 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_18250 PF00668 Condensation domain AM378_18250 PF00501 AMP-binding enzyme AM378_18250 PF00550 Phosphopantetheine attachment site AM378_18250 PF13193 AMP-binding enzyme C-terminal domain AM378_18255 PF00202 Aminotransferase class-III AM378_18255 PF00109 Beta-ketoacyl synthase, N-terminal domain AM378_18255 PF00668 Condensation domain AM378_18255 PF00550 Phosphopantetheine attachment site AM378_18255 PF13193 AMP-binding enzyme C-terminal domain AM378_18255 PF00501 AMP-binding enzyme AM378_18255 PF02801 Beta-ketoacyl synthase, C-terminal domain AM378_18255 PF16197 Ketoacyl-synthetase C-terminal extension AM378_18260 PF00155 Aminotransferase class I and II AM378_18260 PF00392 Bacterial regulatory proteins, gntR family AM378_18265 PF00892 EamA-like transporter family AM378_18285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_18295 PF01384 Phosphate transporter family AM378_18300 PF10625 Universal stress protein B (UspB) AM378_18315 PF00999 Sodium/hydrogen exchanger family AM378_18315 PF02254 TrkA-N domain AM378_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_18325 PF03466 LysR substrate binding domain AM378_18330 PF00582 Universal stress protein family AM378_18335 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AM378_18335 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM378_18345 PF00005 ABC transporter AM378_18350 PF02653 Branched-chain amino acid transport system / permease component AM378_18355 PF02653 Branched-chain amino acid transport system / permease component AM378_18365 PF00571 CBS domain AM378_18365 PF01380 SIS domain AM378_18370 PF04445 Putative SAM-dependent methyltransferase AM378_18375 PF01432 Peptidase family M3 AM378_18385 PF01425 Amidase AM378_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_18390 PF03466 LysR substrate binding domain AM378_18400 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AM378_18405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM378_18405 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_18415 PF00072 Response regulator receiver domain AM378_18415 PF09308 LuxQ, periplasmic AM378_18415 PF00512 His Kinase A (phospho-acceptor) domain AM378_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_18425 PF03797 Autotransporter beta-domain AM378_18425 PF12951 Passenger-associated-transport-repeat AM378_18425 PF00082 Subtilase family AM378_18430 PF00082 Subtilase family AM378_18430 PF03797 Autotransporter beta-domain AM378_18430 PF12951 Passenger-associated-transport-repeat AM378_18445 PF07813 LTXXQ motif family protein AM378_18450 PF00990 Diguanylate cyclase, GGDEF domain AM378_18450 PF00563 EAL domain AM378_18450 PF13426 PAS domain AM378_18455 PF00378 Enoyl-CoA hydratase/isomerase AM378_18460 PF03631 Virulence factor BrkB AM378_18465 PF07690 Major Facilitator Superfamily AM378_18465 PF00083 Sugar (and other) transporter AM378_18470 PF02611 CDP-diacylglycerol pyrophosphatase AM378_18475 PF05170 AsmA family AM378_18480 PF00563 EAL domain AM378_18485 PF00294 pfkB family carbohydrate kinase AM378_18490 PF03472 Autoinducer binding domain AM378_18490 PF00196 Bacterial regulatory proteins, luxR family AM378_18495 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AM378_18495 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AM378_18500 PF03466 LysR substrate binding domain AM378_18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_18515 PF00291 Pyridoxal-phosphate dependent enzyme AM378_18515 PF00585 C-terminal regulatory domain of Threonine dehydratase AM378_18520 PF00920 Dehydratase family AM378_18525 PF01063 Amino-transferase class IV AM378_18535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_18535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_18535 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_18540 PF08046 IlvGEDA operon leader peptide AM378_18550 PF13335 Magnesium chelatase, subunit ChlI C-terminal AM378_18550 PF01078 Magnesium chelatase, subunit ChlI AM378_18555 PF04219 Protein of unknown function, DUF AM378_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_18560 PF03466 LysR substrate binding domain AM378_18600 PF01177 Asp/Glu/Hydantoin racemase AM378_18605 PF07715 TonB-dependent Receptor Plug Domain AM378_18605 PF00593 TonB dependent receptor AM378_18610 PF05958 tRNA (Uracil-5-)-methyltransferase AM378_18615 PF07226 Protein of unknown function (DUF1422) AM378_18620 PF00440 Bacterial regulatory proteins, tetR family AM378_18625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM378_18625 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_18630 PF03466 LysR substrate binding domain AM378_18635 PF00462 Glutaredoxin AM378_18635 PF08534 Redoxin AM378_18640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AM378_18640 PF07992 Pyridine nucleotide-disulphide oxidoreductase AM378_18650 PF14698 Argininosuccinate lyase C-terminal AM378_18650 PF00206 Lyase AM378_18655 PF00764 Arginosuccinate synthase AM378_18660 PF00696 Amino acid kinase family AM378_18665 PF02774 Semialdehyde dehydrogenase, dimerisation domain AM378_18665 PF01118 Semialdehyde dehydrogenase, NAD binding domain AM378_18670 PF07687 Peptidase dimerisation domain AM378_18670 PF01546 Peptidase family M20/M25/M40 AM378_18675 PF00311 Phosphoenolpyruvate carboxylase AM378_18680 PF02219 Methylenetetrahydrofolate reductase AM378_18685 PF03447 Homoserine dehydrogenase, NAD binding domain AM378_18685 PF00742 Homoserine dehydrogenase AM378_18685 PF00696 Amino acid kinase family AM378_18690 PF01053 Cys/Met metabolism PLP-dependent enzyme AM378_18695 PF01340 Met Apo-repressor, MetJ AM378_18700 PF01197 Ribosomal protein L31 AM378_18705 PF18074 Primosomal protein N C-terminal domain AM378_18705 PF17764 3′ DNA-binding domain (3′BD) AM378_18705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AM378_18705 PF00271 Helicase conserved C-terminal domain AM378_18705 PF00270 DEAD/DEAH box helicase AM378_18710 PF00356 Bacterial regulatory proteins, lacI family AM378_18715 PF05036 Sporulation related domain AM378_18720 PF00227 Proteasome subunit AM378_18725 PF00004 ATPase family associated with various cellular activities (AAA) AM378_18725 PF07724 AAA domain (Cdc48 subfamily) AM378_18725 PF10431 C-terminal, D2-small domain, of ClpB protein AM378_18730 PF01040 UbiA prenyltransferase family AM378_18735 PF03737 Aldolase/RraA AM378_18740 PF06005 Cell division protein ZapB AM378_18745 PF00230 Major intrinsic protein AM378_18750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_18750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_18755 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AM378_18760 PF07690 Major Facilitator Superfamily AM378_18770 PF00175 Oxidoreductase NAD-binding domain AM378_18770 PF00970 Oxidoreductase FAD-binding domain AM378_18775 PF05656 Protein of unknown function (DUF805) AM378_18780 PF07305 Protein of unknown function (DUF1454) AM378_18785 PF00121 Triosephosphate isomerase AM378_18795 PF00365 Phosphofructokinase AM378_18800 PF01545 Cation efflux family AM378_18800 PF16916 Dimerisation domain of Zinc Transporter AM378_18805 PF07813 LTXXQ motif family protein AM378_18810 PF00072 Response regulator receiver domain AM378_18810 PF00486 Transcriptional regulatory protein, C terminal AM378_18815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_18815 PF00512 His Kinase A (phospho-acceptor) domain AM378_18815 PF16527 Two-component sensor protein CpxA, periplasmic domain AM378_18815 PF00672 HAMP domain AM378_18820 PF00588 SpoU rRNA Methylase family AM378_18830 PF11769 Protein of unknown function (DUF3313) AM378_18835 PF06426 Serine acetyltransferase, N-terminal AM378_18835 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_18840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AM378_18840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AM378_18845 PF02556 Preprotein translocase subunit SecB AM378_18850 PF00462 Glutaredoxin AM378_18855 PF00581 Rhodanese-like domain AM378_18860 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AM378_18860 PF01676 Metalloenzyme superfamily AM378_18865 PF01551 Peptidase family M23 AM378_18870 PF04748 Divergent polysaccharide deacetylase AM378_18875 PF08240 Alcohol dehydrogenase GroES-like domain AM378_18875 PF00107 Zinc-binding dehydrogenase AM378_18880 PF00155 Aminotransferase class I and II AM378_18885 PF01370 NAD dependent epimerase/dehydratase family AM378_18890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM378_18895 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM378_18900 PF09318 Glycosyl transferase 1 domain A AM378_18900 PF00534 Glycosyl transferases group 1 AM378_18905 PF04932 O-Antigen ligase AM378_18910 PF01501 Glycosyl transferase family 8 AM378_18910 PF00535 Glycosyl transferase family 2 AM378_18925 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AM378_18930 PF00534 Glycosyl transferases group 1 AM378_18930 PF13439 Glycosyltransferase Family 4 AM378_18935 PF00534 Glycosyl transferases group 1 AM378_18935 PF13439 Glycosyltransferase Family 4 AM378_18945 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AM378_18950 PF00535 Glycosyl transferase family 2 AM378_18955 PF01467 Cytidylyltransferase-like AM378_18960 PF06827 Zinc finger found in FPG and IleRS AM378_18960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AM378_18960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AM378_18965 PF00471 Ribosomal protein L33 AM378_18970 PF00830 Ribosomal L28 family AM378_18975 PF04002 RadC-like JAB domain AM378_18980 PF04127 DNA / pantothenate metabolism flavoprotein AM378_18980 PF02441 Flavoprotein AM378_18985 PF00692 dUTPase AM378_18990 PF00440 Bacterial regulatory proteins, tetR family AM378_18995 PF00156 Phosphoribosyl transferase domain AM378_19000 PF01138 3' exoribonuclease family, domain 1 AM378_19000 PF03725 3' exoribonuclease family, domain 2 AM378_19005 PF03755 YicC-like family, N-terminal region AM378_19005 PF08340 Domain of unknown function (DUF1732) AM378_19015 PF07670 Nucleoside recognition AM378_19015 PF01773 Na+ dependent nucleoside transporter N-terminus AM378_19015 PF07662 Na+ dependent nucleoside transporter C-terminus AM378_19025 PF03458 UPF0126 domain AM378_19030 PF00625 Guanylate kinase AM378_19035 PF01192 RNA polymerase Rpb6 AM378_19040 PF04607 Region found in RelA / SpoT proteins AM378_19040 PF02824 TGS domain AM378_19040 PF13291 ACT domain AM378_19045 PF00588 SpoU rRNA Methylase family AM378_19045 PF12105 SpoU, rRNA methylase, C-terminal AM378_19050 PF17191 RecG wedge domain AM378_19050 PF00270 DEAD/DEAH box helicase AM378_19050 PF00271 Helicase conserved C-terminal domain AM378_19055 PF03616 Sodium/glutamate symporter AM378_19060 PF00860 Permease family AM378_19065 PF05170 AsmA family AM378_19070 PF09500 Putative thioesterase (yiiD_Cterm) AM378_19070 PF00583 Acetyltransferase (GNAT) family AM378_19075 PF02580 D-Tyr-tRNA(Tyr) deacylase AM378_19080 PF03631 Virulence factor BrkB AM378_19085 PF13419 Haloacid dehalogenase-like hydrolase AM378_19095 PF03951 Glutamine synthetase, beta-Grasp domain AM378_19095 PF00120 Glutamine synthetase, catalytic domain AM378_19100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_19100 PF00512 His Kinase A (phospho-acceptor) domain AM378_19100 PF00989 PAS fold AM378_19105 PF00158 Sigma-54 interaction domain AM378_19105 PF00072 Response regulator receiver domain AM378_19105 PF02954 Bacterial regulatory protein, Fis family AM378_19110 PF06969 HemN C-terminal domain AM378_19110 PF04055 Radical SAM superfamily AM378_19120 PF04220 Der GTPase activator (YihI) AM378_19130 PF01926 50S ribosome-binding GTPase AM378_19135 PF01367 5'-3' exonuclease, C-terminal SAM fold AM378_19135 PF01612 3'-5' exonuclease AM378_19135 PF00476 DNA polymerase family A AM378_19135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AM378_19140 PF01553 Acyltransferase AM378_19145 PF01323 DSBA-like thioredoxin domain AM378_19150 PF01636 Phosphotransferase enzyme family AM378_19155 PF06288 Protein of unknown function (DUF1040) AM378_19160 PF12804 MobA-like NTP transferase domain AM378_19165 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AM378_19190 PF00392 Bacterial regulatory proteins, gntR family AM378_19190 PF07729 FCD domain AM378_19195 PF07690 Major Facilitator Superfamily AM378_19200 PF00356 Bacterial regulatory proteins, lacI family AM378_19205 PF00294 pfkB family carbohydrate kinase AM378_19210 PF13407 Periplasmic binding protein domain AM378_19215 PF02653 Branched-chain amino acid transport system / permease component AM378_19220 PF00005 ABC transporter AM378_19225 PF05025 RbsD / FucU transport protein family AM378_19230 PF02705 K+ potassium transporter AM378_19235 PF17868 AAA lid domain AM378_19235 PF07728 AAA domain (dynein-related subfamily) AM378_19235 PF12592 Protein of unknown function (DUF3763) AM378_19240 PF05762 VWA domain containing CoxE-like protein AM378_19245 PF03590 Aspartate-ammonia ligase AM378_19250 PF01037 Lrp/AsnC ligand binding domain AM378_19255 PF00258 Flavodoxin AM378_19260 PF01134 Glucose inhibited division protein A AM378_19260 PF13932 GidA associated domain AM378_19265 PF02527 rRNA small subunit methyltransferase G AM378_19270 PF03899 ATP synthase I chain AM378_19275 PF00119 ATP synthase A chain AM378_19280 PF00137 ATP synthase subunit C AM378_19285 PF00430 ATP synthase B/B' CF(0) AM378_19290 PF00213 ATP synthase delta (OSCP) subunit AM378_19295 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM378_19295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM378_19295 PF00306 ATP synthase alpha/beta chain, C terminal domain AM378_19300 PF00231 ATP synthase AM378_19305 PF02874 ATP synthase alpha/beta family, beta-barrel domain AM378_19305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM378_19310 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AM378_19310 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AM378_19315 PF12804 MobA-like NTP transferase domain AM378_19315 PF00132 Bacterial transferase hexapeptide (six repeats) AM378_19320 PF01380 SIS domain AM378_19325 PF12849 PBP superfamily domain AM378_19330 PF00528 Binding-protein-dependent transport system inner membrane component AM378_19335 PF00528 Binding-protein-dependent transport system inner membrane component AM378_19340 PF00005 ABC transporter AM378_19345 PF01895 PhoU domain AM378_19350 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_19355 PF00528 Binding-protein-dependent transport system inner membrane component AM378_19360 PF00528 Binding-protein-dependent transport system inner membrane component AM378_19365 PF13419 Haloacid dehalogenase-like hydrolase AM378_19370 PF00293 NUDIX domain AM378_19375 PF00860 Permease family AM378_19385 PF03358 NADPH-dependent FMN reductase AM378_19390 PF01648 4'-phosphopantetheinyl transferase superfamily AM378_19395 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AM378_19400 PF12631 MnmE helical domain AM378_19400 PF10396 GTP-binding protein TrmE N-terminus AM378_19400 PF01926 50S ribosome-binding GTPase AM378_19405 PF02096 60Kd inner membrane protein AM378_19405 PF14849 YidC periplasmic domain AM378_19410 PF01809 Putative membrane protein insertion efficiency factor AM378_19415 PF00825 Ribonuclease P AM378_19420 PF00468 Ribosomal protein L34 AM378_19425 PF00308 Bacterial dnaA protein AM378_19425 PF08299 Bacterial dnaA protein helix-turn-helix AM378_19425 PF11638 DnaA N-terminal domain AM378_19430 PF00712 DNA polymerase III beta subunit, N-terminal domain AM378_19430 PF02767 DNA polymerase III beta subunit, central domain AM378_19430 PF02768 DNA polymerase III beta subunit, C-terminal domain AM378_19435 PF02463 RecF/RecN/SMC N terminal domain AM378_19440 PF00204 DNA gyrase B AM378_19440 PF00986 DNA gyrase B subunit, carboxyl terminus AM378_19440 PF18053 DNA gyrase B subunit insert domain AM378_19440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_19440 PF01751 Toprim domain AM378_19450 PF02423 Ornithine cyclodeaminase/mu-crystallin family AM378_19455 PF00291 Pyridoxal-phosphate dependent enzyme AM378_19465 PF12566 Protein of unknown function (DUF3748) AM378_19465 PF07676 WD40-like Beta Propeller Repeat AM378_19470 PF07119 Protein of unknown function (DUF1375) AM378_19475 PF00011 Hsp20/alpha crystallin family AM378_19480 PF00011 Hsp20/alpha crystallin family AM378_19485 PF06826 Predicted Permease Membrane Region AM378_19485 PF02080 TrkA-C domain AM378_19500 PF00155 Aminotransferase class I and II AM378_19505 PF00128 Alpha amylase, catalytic domain AM378_19510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AM378_19510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AM378_19515 PF07690 Major Facilitator Superfamily AM378_19520 PF00294 pfkB family carbohydrate kinase AM378_19530 PF00356 Bacterial regulatory proteins, lacI family AM378_19535 PF13488 Glycine zipper AM378_19535 PF00691 OmpA family AM378_19545 PF03352 Methyladenine glycosylase AM378_19550 PF03797 Autotransporter beta-domain AM378_19550 PF00657 GDSL-like Lipase/Acylhydrolase AM378_19555 PF02091 Glycyl-tRNA synthetase alpha subunit AM378_19560 PF02092 Glycyl-tRNA synthetase beta subunit AM378_19560 PF05746 DALR anticodon binding domain AM378_19565 PF11254 Protein of unknown function (DUF3053) AM378_19585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AM378_19585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM378_19585 PF02378 Phosphotransferase system, EIIC AM378_19590 PF08125 Mannitol dehydrogenase C-terminal domain AM378_19590 PF01232 Mannitol dehydrogenase Rossmann domain AM378_19595 PF05068 Mannitol repressor AM378_19605 PF00392 Bacterial regulatory proteins, gntR family AM378_19605 PF00155 Aminotransferase class I and II AM378_19610 PF10928 Protein of unknown function (DUF2810) AM378_19615 PF08241 Methyltransferase domain AM378_19620 PF03473 MOSC domain AM378_19620 PF03475 3-alpha domain AM378_19625 PF00672 HAMP domain AM378_19625 PF02203 Tar ligand binding domain homologue AM378_19625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_19630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AM378_19630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AM378_19635 PF01568 Molydopterin dinucleotide binding domain AM378_19635 PF00384 Molybdopterin oxidoreductase AM378_19635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM378_19640 PF00384 Molybdopterin oxidoreductase AM378_19640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AM378_19640 PF01568 Molydopterin dinucleotide binding domain AM378_19645 PF09163 Formate dehydrogenase N, transmembrane AM378_19645 PF13247 4Fe-4S dicluster domain AM378_19650 PF01292 Prokaryotic cytochrome b561 AM378_19655 PF04216 Protein involved in formate dehydrogenase formation AM378_19665 PF00043 Glutathione S-transferase, C-terminal domain AM378_19665 PF13417 Glutathione S-transferase, N-terminal domain AM378_19670 PF12390 Selenocysteine synthase N terminal AM378_19670 PF03841 L-seryl-tRNA selenium transferase AM378_19675 PF09106 Elongation factor SelB, winged helix AM378_19675 PF09107 Elongation factor SelB, winged helix AM378_19675 PF00009 Elongation factor Tu GTP binding domain AM378_19675 PF03144 Elongation factor Tu domain 2 AM378_19690 PF03466 LysR substrate binding domain AM378_19690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_19700 PF07690 Major Facilitator Superfamily AM378_19705 PF01757 Acyltransferase family AM378_19715 PF00857 Isochorismatase family AM378_19720 PF07969 Amidohydrolase family AM378_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_19735 PF03466 LysR substrate binding domain AM378_19740 PF07690 Major Facilitator Superfamily AM378_19760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_19760 PF03466 LysR substrate binding domain AM378_19770 PF13533 Biotin-lipoyl like AM378_19775 PF02321 Outer membrane efflux protein AM378_19795 PF07690 Major Facilitator Superfamily AM378_19805 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AM378_19805 PF00367 phosphotransferase system, EIIB AM378_19805 PF02378 Phosphotransferase system, EIIC AM378_19810 PF00232 Glycosyl hydrolase family 1 AM378_19815 PF04966 Carbohydrate-selective porin, OprB family AM378_19825 PF01047 MarR family AM378_19830 PF02566 OsmC-like protein AM378_19835 PF08019 Phosphoethanolamine transferase EptA/EptB AM378_19835 PF00884 Sulfatase AM378_19840 PF00196 Bacterial regulatory proteins, luxR family AM378_19840 PF00072 Response regulator receiver domain AM378_19845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_19845 PF07730 Histidine kinase AM378_19845 PF05231 MASE1 AM378_19850 PF07690 Major Facilitator Superfamily AM378_19875 PF08329 Chitinase A, N-terminal domain AM378_19875 PF00704 Glycosyl hydrolases family 18 AM378_19880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_19885 PF00528 Binding-protein-dependent transport system inner membrane component AM378_19890 PF12911 N-terminal TM domain of oligopeptide transport permease C AM378_19890 PF00528 Binding-protein-dependent transport system inner membrane component AM378_19895 PF00005 ABC transporter AM378_19895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_19900 PF00005 ABC transporter AM378_19900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AM378_19905 PF11658 Cellulose biosynthesis protein BcsG AM378_19910 PF11120 Cellulose biosynthesis protein BcsF AM378_19915 PF10995 Cellulose biosynthesis GIL AM378_19925 PF06564 Cellulose biosynthesis protein BcsQ AM378_19930 PF07238 PilZ domain AM378_19930 PF00535 Glycosyl transferase family 2 AM378_19935 PF03170 Bacterial cellulose synthase subunit AM378_19940 PF01270 Glycosyl hydrolases family 8 AM378_19945 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AM378_19950 PF17154 Gammaproteobacterial periplasmic sensor domain AM378_19950 PF00990 Diguanylate cyclase, GGDEF domain AM378_19950 PF00563 EAL domain AM378_19950 PF00672 HAMP domain AM378_19955 PF00375 Sodium:dicarboxylate symporter family AM378_19960 PF05193 Peptidase M16 inactive domain AM378_19960 PF00675 Insulinase (Peptidase family M16) AM378_19970 PF00580 UvrD/REP helicase N-terminal domain AM378_19970 PF13361 UvrD-like helicase C-terminal domain AM378_19975 PF02541 Ppx/GppA phosphatase family AM378_19980 PF00270 DEAD/DEAH box helicase AM378_19980 PF00271 Helicase conserved C-terminal domain AM378_19985 PF00085 Thioredoxin AM378_19990 PF07498 Rho termination factor, N-terminal domain AM378_19990 PF07497 Rho termination factor, RNA-binding domain AM378_19990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AM378_19995 PF00953 Glycosyl transferase family 4 AM378_20000 PF02706 Chain length determinant protein AM378_20005 PF02350 UDP-N-acetylglucosamine 2-epimerase AM378_20010 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AM378_20010 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AM378_20010 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AM378_20015 PF16363 GDP-mannose 4,6 dehydratase AM378_20020 PF00483 Nucleotidyl transferase AM378_20030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AM378_20035 PF01943 Polysaccharide biosynthesis protein AM378_20040 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 AM378_20045 PF06899 WzyE protein, O-antigen assembly polymerase AM378_20050 PF03808 Glycosyl transferase WecB/TagA/CpsF family AM378_20055 PF00324 Amino acid permease AM378_20090 PF07219 HemY protein N-terminus AM378_20090 PF07719 Tetratricopeptide repeat AM378_20095 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AM378_20100 PF02602 Uroporphyrinogen-III synthase HemD AM378_20105 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AM378_20105 PF03900 Porphobilinogen deaminase, C-terminal domain AM378_20110 PF01295 Adenylate cyclase, class-I AM378_20110 PF12633 Adenylate cyclase NT domain AM378_20115 PF01491 Frataxin-like domain AM378_20120 PF13627 Prokaryotic lipoprotein-attachment site AM378_20125 PF01678 Diaminopimelate epimerase AM378_20130 PF04340 Protein of unknown function, DUF484 AM378_20135 PF02899 Phage integrase, N-terminal SAM-like domain AM378_20135 PF00589 Phage integrase family AM378_20140 PF13419 Haloacid dehalogenase-like hydrolase AM378_20145 PF00580 UvrD/REP helicase N-terminal domain AM378_20145 PF13361 UvrD-like helicase C-terminal domain AM378_20160 PF01544 CorA-like Mg2+ transporter protein AM378_20165 PF00892 EamA-like transporter family AM378_20170 PF03061 Thioesterase superfamily AM378_20175 PF02253 Phospholipase A1 AM378_20180 PF00271 Helicase conserved C-terminal domain AM378_20180 PF16124 RecQ zinc-binding AM378_20180 PF09382 RQC domain AM378_20180 PF00570 HRDC domain AM378_20180 PF00270 DEAD/DEAH box helicase AM378_20185 PF01810 LysE type translocator AM378_20190 PF01810 LysE type translocator AM378_20195 PF12146 Serine aminopeptidase, S33 AM378_20205 PF03009 Glycerophosphoryl diester phosphodiesterase family AM378_20210 PF07690 Major Facilitator Superfamily AM378_20220 PF04324 BFD-like [2Fe-2S] binding domain AM378_20220 PF01266 FAD dependent oxidoreductase AM378_20225 PF00890 FAD binding domain AM378_20230 PF02754 Cysteine-rich domain AM378_20230 PF13183 4Fe-4S dicluster domain AM378_20235 PF08786 DcrB AM378_20245 PF02592 Putative vitamin uptake transporter AM378_20250 PF01206 Sulfurtransferase TusA AM378_20265 PF00403 Heavy-metal-associated domain AM378_20270 PF00413 Matrixin AM378_20270 PF08548 Peptidase M10 serralysin C terminal AM378_20270 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AM378_20275 PF02974 Protease inhibitor Inh AM378_20280 PF07947 YhhN family AM378_20290 PF06611 Protein of unknown function (DUF1145) AM378_20300 PF02881 SRP54-type protein, helical bundle domain AM378_20300 PF00448 SRP54-type protein, GTPase domain AM378_20300 PF02881 SRP54-type protein, helical bundle domain AM378_20300 PF00448 SRP54-type protein, GTPase domain AM378_20305 PF00005 ABC transporter AM378_20310 PF02687 FtsX-like permease family AM378_20310 PF18075 FtsX extracellular domain AM378_20315 PF04545 Sigma-70, region 4 AM378_20315 PF04542 Sigma-70 region 2 AM378_20315 PF00140 Sigma-70 factor, region 1.2 AM378_20330 PF12568 Acetyltransferase (GNAT) domain, PanZ AM378_20335 PF13458 Periplasmic binding protein AM378_20340 PF02653 Branched-chain amino acid transport system / permease component AM378_20345 PF02653 Branched-chain amino acid transport system / permease component AM378_20345 PF11862 Domain of unknown function (DUF3382) AM378_20350 PF12399 Branched-chain amino acid ATP-binding cassette transporter AM378_20350 PF00005 ABC transporter AM378_20355 PF00005 ABC transporter AM378_20360 PF00155 Aminotransferase class I and II AM378_20365 PF13416 Bacterial extracellular solute-binding protein AM378_20370 PF00528 Binding-protein-dependent transport system inner membrane component AM378_20375 PF00528 Binding-protein-dependent transport system inner membrane component AM378_20380 PF17912 MalK OB fold domain AM378_20380 PF00005 ABC transporter AM378_20385 PF03009 Glycerophosphoryl diester phosphodiesterase family AM378_20400 PF00892 EamA-like transporter family AM378_20405 PF03466 LysR substrate binding domain AM378_20405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_20410 PF08267 Cobalamin-independent synthase, N-terminal domain AM378_20410 PF01717 Cobalamin-independent synthase, Catalytic domain AM378_20415 PF01738 Dienelactone hydrolase family AM378_20420 PF01048 Phosphorylase superfamily AM378_20430 PF09335 SNARE associated Golgi protein AM378_20435 PF02646 RmuC family AM378_20440 PF01209 ubiE/COQ5 methyltransferase family AM378_20445 PF02036 SCP-2 sterol transfer family AM378_20450 PF03109 ABC1 family AM378_20455 PF02416 mttA/Hcf106 family AM378_20465 PF00902 Sec-independent protein translocase protein (TatC) AM378_20470 PF01026 TatD related DNase AM378_20475 PF00490 Delta-aminolevulinic acid dehydratase AM378_20480 PF02357 Transcription termination factor nusG AM378_20485 PF03575 Peptidase family S51 AM378_20490 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AM378_20495 PF00970 Oxidoreductase FAD-binding domain AM378_20495 PF00175 Oxidoreductase NAD-binding domain AM378_20500 PF02803 Thiolase, C-terminal domain AM378_20500 PF00108 Thiolase, N-terminal domain AM378_20505 PF00378 Enoyl-CoA hydratase/isomerase AM378_20505 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM378_20505 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM378_20510 PF00557 Metallopeptidase family M24 AM378_20515 PF01205 Uncharacterized protein family UPF0029 AM378_20515 PF09186 Domain of unknown function (DUF1949) AM378_20520 PF02386 Cation transport protein AM378_20525 PF12724 Flavodoxin domain AM378_20550 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AM378_20550 PF01565 FAD binding domain AM378_20555 PF03099 Biotin/lipoate A/B protein ligase family AM378_20555 PF02237 Biotin protein ligase C terminal domain AM378_20555 PF08279 HTH domain AM378_20560 PF00485 Phosphoribulokinase / Uridine kinase family AM378_20565 PF13673 Acetyltransferase (GNAT) domain AM378_20595 PF00009 Elongation factor Tu GTP binding domain AM378_20595 PF03144 Elongation factor Tu domain 2 AM378_20595 PF03143 Elongation factor Tu C-terminal domain AM378_20600 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AM378_20605 PF02357 Transcription termination factor nusG AM378_20605 PF00467 KOW motif AM378_20610 PF00298 Ribosomal protein L11, RNA binding domain AM378_20610 PF03946 Ribosomal protein L11, N-terminal domain AM378_20615 PF00687 Ribosomal protein L1p/L10e family AM378_20620 PF00466 Ribosomal protein L10 AM378_20625 PF16320 Ribosomal protein L7/L12 dimerisation domain AM378_20625 PF00542 Ribosomal protein L7/L12 C-terminal domain AM378_20630 PF04561 RNA polymerase Rpb2, domain 2 AM378_20630 PF04565 RNA polymerase Rpb2, domain 3 AM378_20630 PF10385 RNA polymerase beta subunit external 1 domain AM378_20630 PF00562 RNA polymerase Rpb2, domain 6 AM378_20630 PF04560 RNA polymerase Rpb2, domain 7 AM378_20630 PF04563 RNA polymerase beta subunit AM378_20635 PF04983 RNA polymerase Rpb1, domain 3 AM378_20635 PF00623 RNA polymerase Rpb1, domain 2 AM378_20635 PF04997 RNA polymerase Rpb1, domain 1 AM378_20635 PF05000 RNA polymerase Rpb1, domain 4 AM378_20635 PF04998 RNA polymerase Rpb1, domain 5 AM378_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_20650 PF00512 His Kinase A (phospho-acceptor) domain AM378_20665 PF06968 Biotin and Thiamin Synthesis associated domain AM378_20665 PF04055 Radical SAM superfamily AM378_20670 PF05690 Thiazole biosynthesis protein ThiG AM378_20675 PF02597 ThiS family AM378_20680 PF00899 ThiF family AM378_20685 PF02581 Thiamine monophosphate synthase AM378_20690 PF13667 ThiC-associated domain AM378_20690 PF01964 Radical SAM ThiC family AM378_20695 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AM378_20700 PF00293 NUDIX domain AM378_20700 PF09297 NADH pyrophosphatase zinc ribbon domain AM378_20705 PF01208 Uroporphyrinogen decarboxylase (URO-D) AM378_20710 PF04493 Endonuclease V AM378_20715 PF04222 Protein of unknown function (DUF416) AM378_20720 PF00216 Bacterial DNA-binding protein AM378_20725 PF07356 Protein of unknown function (DUF1481) AM378_20730 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AM378_20730 PF02843 Phosphoribosylglycinamide synthetase, C domain AM378_20730 PF02844 Phosphoribosylglycinamide synthetase, N domain AM378_20735 PF01808 AICARFT/IMPCHase bienzyme AM378_20735 PF02142 MGS-like domain AM378_20765 PF00474 Sodium:solute symporter family AM378_20770 PF04341 Protein of unknown function, DUF485 AM378_20775 PF00501 AMP-binding enzyme AM378_20775 PF16177 Acetyl-coenzyme A synthetase N-terminus AM378_20775 PF13193 AMP-binding enzyme C-terminal domain AM378_20780 PF00375 Sodium:dicarboxylate symporter family AM378_20785 PF00975 Thioesterase domain AM378_20785 PF00550 Phosphopantetheine attachment site AM378_20785 PF13193 AMP-binding enzyme C-terminal domain AM378_20785 PF00668 Condensation domain AM378_20785 PF00501 AMP-binding enzyme AM378_20790 PF08242 Methyltransferase domain AM378_20790 PF00550 Phosphopantetheine attachment site AM378_20790 PF00668 Condensation domain AM378_20790 PF00501 AMP-binding enzyme AM378_20795 PF00550 Phosphopantetheine attachment site AM378_20795 PF00501 AMP-binding enzyme AM378_20795 PF00668 Condensation domain AM378_20800 PF07715 TonB-dependent Receptor Plug Domain AM378_20805 PF13193 AMP-binding enzyme C-terminal domain AM378_20805 PF00668 Condensation domain AM378_20805 PF00550 Phosphopantetheine attachment site AM378_20805 PF00975 Thioesterase domain AM378_20805 PF00501 AMP-binding enzyme AM378_20815 PF00593 TonB dependent receptor AM378_20815 PF07715 TonB-dependent Receptor Plug Domain AM378_20820 PF11806 Domain of unknown function (DUF3327) AM378_20820 PF00756 Putative esterase AM378_20830 PF00975 Thioesterase domain AM378_20830 PF00550 Phosphopantetheine attachment site AM378_20830 PF00668 Condensation domain AM378_20830 PF00501 AMP-binding enzyme AM378_20835 PF05977 Transmembrane secretion effector AM378_20840 PF00425 chorismate binding enzyme AM378_20845 PF00501 AMP-binding enzyme AM378_20845 PF13193 AMP-binding enzyme C-terminal domain AM378_20850 PF00857 Isochorismatase family AM378_20850 PF00550 Phosphopantetheine attachment site AM378_20860 PF09997 Predicted membrane protein (DUF2238) AM378_20880 PF02683 Cytochrome C biogenesis protein transmembrane region AM378_20880 PF11412 Disulphide bond corrector protein DsbC AM378_20885 PF03091 CutA1 divalent ion tolerance protein AM378_20890 PF03605 Anaerobic c4-dicarboxylate membrane transporter AM378_20895 PF10415 Fumarase C C-terminus AM378_20895 PF00206 Lyase AM378_20900 PF04186 FxsA cytoplasmic membrane protein AM378_20905 PF00166 Chaperonin 10 Kd subunit AM378_20910 PF00118 TCP-1/cpn60 chaperonin family AM378_20915 PF13698 Domain of unknown function (DUF4156) AM378_20920 PF04055 Radical SAM superfamily AM378_20925 PF08207 Elongation factor P (EF-P) KOW-like domain AM378_20925 PF01132 Elongation factor P (EF-P) OB domain AM378_20925 PF09285 Elongation factor P, C-terminal AM378_20930 PF08085 Entericidin EcnA/B family AM378_20935 PF08085 Entericidin EcnA/B family AM378_20940 PF00893 Small Multidrug Resistance protein AM378_20945 PF08212 Lipocalin-like domain AM378_20950 PF02313 Fumarate reductase subunit D AM378_20955 PF02300 Fumarate reductase subunit C AM378_20960 PF13085 2Fe-2S iron-sulfur cluster binding domain AM378_20960 PF13183 4Fe-4S dicluster domain AM378_20965 PF00890 FAD binding domain AM378_20965 PF02910 Fumarate reductase flavoprotein C-term AM378_20970 PF00152 tRNA synthetases class II (D, K and N) AM378_20975 PF12794 Mechanosensitive ion channel inner membrane domain 1 AM378_20975 PF12795 Mechanosensitive ion channel porin domain AM378_20975 PF00924 Mechanosensitive ion channel AM378_20980 PF02666 Phosphatidylserine decarboxylase AM378_20985 PF03193 RsgA GTPase AM378_20990 PF00929 Exonuclease AM378_21010 PF08331 Domain of unknown function (DUF1730) AM378_21015 PF01256 Carbohydrate kinase AM378_21015 PF03853 YjeF-related protein N-terminus AM378_21020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AM378_21025 PF01520 N-acetylmuramoyl-L-alanine amidase AM378_21030 PF08676 MutL C terminal dimerisation domain AM378_21030 PF01119 DNA mismatch repair protein, C-terminal domain AM378_21040 PF17209 Hfq protein AM378_21045 PF01926 50S ribosome-binding GTPase AM378_21045 PF16360 GTP-binding GTPase Middle Region AM378_21045 PF13167 GTP-binding GTPase N-terminal AM378_21050 PF01145 SPFH domain / Band 7 family AM378_21050 PF12221 Bacterial membrane protein N terminal AM378_21055 PF01145 SPFH domain / Band 7 family AM378_21060 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AM378_21065 PF00709 Adenylosuccinate synthetase AM378_21070 PF02082 Transcriptional regulator AM378_21075 PF17876 Cold shock domain AM378_21075 PF00773 RNB domain AM378_21075 PF08461 Ribonuclease R winged-helix domain AM378_21075 PF08206 Ribonuclease B OB domain AM378_21075 PF00575 S1 RNA binding domain AM378_21080 PF08032 RNA 2'-O ribose methyltransferase substrate binding AM378_21080 PF00588 SpoU rRNA Methylase family AM378_21085 PF18158 Adaptive response protein AidB N-terminal domain AM378_21085 PF02770 Acyl-CoA dehydrogenase, middle domain AM378_21085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM378_21090 PF03994 Domain of Unknown Function (DUF350) AM378_21100 PF07338 Protein of unknown function (DUF1471) AM378_21105 PF00326 Prolyl oligopeptidase family AM378_21120 PF01250 Ribosomal protein S6 AM378_21125 PF00436 Single-strand binding protein family AM378_21130 PF01084 Ribosomal protein S18 AM378_21135 PF03948 Ribosomal protein L9, C-terminal domain AM378_21135 PF01281 Ribosomal protein L9, N-terminal domain AM378_21145 PF08525 Opacity-associated protein A N-terminal motif AM378_21145 PF04225 Opacity-associated protein A LysM-like domain AM378_21150 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AM378_21150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_21155 PF01814 Hemerythrin HHE cation binding domain AM378_21155 PF04405 Domain of Unknown function (DUF542) AM378_21160 PF00149 Calcineurin-like phosphoesterase AM378_21160 PF02872 5'-nucleotidase, C-terminal domain AM378_21165 PF00459 Inositol monophosphatase family AM378_21170 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AM378_21175 PF06526 Protein of unknown function (DUF1107) AM378_21180 PF01595 Cyclin M transmembrane N-terminal domain AM378_21180 PF03471 Transporter associated domain AM378_21180 PF00571 CBS domain AM378_21185 PF01625 Peptide methionine sulfoxide reductase AM378_21190 PF17243 POTRA domain TamA domain 1 AM378_21190 PF07244 Surface antigen variable number repeat AM378_21190 PF01103 Surface antigen AM378_21195 PF04357 TamB, inner membrane protein subunit of TAM complex AM378_21200 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AM378_21205 PF00719 Inorganic pyrophosphatase AM378_21210 PF02203 Tar ligand binding domain homologue AM378_21210 PF00672 HAMP domain AM378_21210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AM378_21215 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AM378_21220 PF01225 Mur ligase family, catalytic domain AM378_21220 PF02875 Mur ligase family, glutamate ligase domain AM378_21220 PF08245 Mur ligase middle domain AM378_21235 PF01316 Arginine repressor, DNA binding domain AM378_21235 PF02863 Arginine repressor, C-terminal domain AM378_21240 PF00056 lactate/malate dehydrogenase, NAD binding domain AM378_21240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AM378_21245 PF13693 Winged helix-turn-helix DNA-binding AM378_21255 PF00348 Polyprenyl synthetase AM378_21260 PF00829 Ribosomal prokaryotic L21 protein AM378_21265 PF01016 Ribosomal L27 protein AM378_21270 PF00892 EamA-like transporter family AM378_21275 PF01018 GTP1/OBG AM378_21275 PF01926 50S ribosome-binding GTPase AM378_21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_21280 PF00672 HAMP domain AM378_21280 PF00512 His Kinase A (phospho-acceptor) domain AM378_21285 PF00486 Transcriptional regulatory protein, C terminal AM378_21285 PF00072 Response regulator receiver domain AM378_21290 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AM378_21295 PF03449 Transcription elongation factor, N-terminal AM378_21295 PF01272 Transcription elongation factor, GreA/GreB, C-term AM378_21300 PF01985 CRS1 / YhbY (CRM) domain AM378_21305 PF01728 FtsJ-like methyltransferase AM378_21310 PF17862 AAA+ lid domain AM378_21310 PF01434 Peptidase family M41 AM378_21310 PF06480 FtsH Extracellular AM378_21310 PF00004 ATPase family associated with various cellular activities (AAA) AM378_21315 PF00809 Pterin binding enzyme AM378_21320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AM378_21320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AM378_21320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AM378_21320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AM378_21325 PF03840 Preprotein translocase SecG subunit AM378_21340 PF02576 RimP N-terminal domain AM378_21340 PF17384 RimP C-terminal SH3 domain AM378_21345 PF13184 NusA-like KH domain AM378_21345 PF08529 NusA N-terminal domain AM378_21345 PF00575 S1 RNA binding domain AM378_21350 PF04760 Translation initiation factor IF-2, N-terminal region AM378_21350 PF08364 Bacterial translation initiation factor IF-2 associated region AM378_21350 PF11987 Translation-initiation factor 2 AM378_21350 PF00009 Elongation factor Tu GTP binding domain AM378_21355 PF02033 Ribosome-binding factor A AM378_21360 PF01509 TruB family pseudouridylate synthase (N terminal domain) AM378_21360 PF16198 tRNA pseudouridylate synthase B C-terminal domain AM378_21360 PF09157 Pseudouridine synthase II TruB, C-terminal AM378_21365 PF00312 Ribosomal protein S15 AM378_21375 PF00013 KH domain AM378_21375 PF00575 S1 RNA binding domain AM378_21375 PF03725 3' exoribonuclease family, domain 2 AM378_21375 PF01138 3' exoribonuclease family, domain 1 AM378_21375 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AM378_21380 PF13181 Tetratricopeptide repeat AM378_21380 PF07719 Tetratricopeptide repeat AM378_21390 PF00271 Helicase conserved C-terminal domain AM378_21390 PF00270 DEAD/DEAH box helicase AM378_21390 PF12343 Cold shock protein DEAD box A AM378_21390 PF03880 DbpA RNA binding domain AM378_21395 PF04143 Sulphur transport AM378_21400 PF01206 Sulfurtransferase TusA AM378_21405 PF00296 Luciferase-like monooxygenase AM378_21445 PF13508 Acetyltransferase (GNAT) domain AM378_21450 PF01541 GIY-YIG catalytic domain AM378_21455 PF13520 Amino acid permease AM378_21460 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AM378_21460 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AM378_21460 PF01276 Orn/Lys/Arg decarboxylase, major domain AM378_21475 PF13460 NAD(P)H-binding AM378_21480 PF12706 Beta-lactamase superfamily domain AM378_21495 PF07969 Amidohydrolase family AM378_21500 PF00005 ABC transporter AM378_21505 PF00005 ABC transporter AM378_21510 PF06007 Phosphonate metabolism protein PhnJ AM378_21515 PF05861 Bacterial phosphonate metabolism protein (PhnI) AM378_21520 PF05845 Bacterial phosphonate metabolism protein (PhnH) AM378_21525 PF06754 Phosphonate metabolism protein PhnG AM378_21530 PF00392 Bacterial regulatory proteins, gntR family AM378_21530 PF07702 UTRA domain AM378_21535 PF03773 Predicted permease AM378_21545 PF12833 Helix-turn-helix domain AM378_21545 PF02311 AraC-like ligand binding domain AM378_21550 PF00117 Glutamine amidotransferase class-I AM378_21565 PF13597 Anaerobic ribonucleoside-triphosphate reductase AM378_21565 PF03477 ATP cone domain AM378_21570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_21570 PF03466 LysR substrate binding domain AM378_21575 PF02525 Flavodoxin-like fold AM378_21580 PF11941 Domain of unknown function (DUF3459) AM378_21580 PF00128 Alpha amylase, catalytic domain AM378_21585 PF02378 Phosphotransferase system, EIIC AM378_21585 PF00367 phosphotransferase system, EIIB AM378_21590 PF00356 Bacterial regulatory proteins, lacI family AM378_21595 PF00690 Cation transporter/ATPase, N-terminus AM378_21595 PF00689 Cation transporting ATPase, C-terminus AM378_21600 PF07691 PA14 domain AM378_21600 PF00728 Glycosyl hydrolase family 20, catalytic domain AM378_21600 PF02838 Glycosyl hydrolase family 20, domain 2 AM378_21605 PF07993 Male sterility protein AM378_21605 PF00668 Condensation domain AM378_21605 PF00501 AMP-binding enzyme AM378_21605 PF00550 Phosphopantetheine attachment site AM378_21605 PF13193 AMP-binding enzyme C-terminal domain AM378_21610 PF01042 Endoribonuclease L-PSP AM378_21615 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AM378_21615 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AM378_21620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM378_21620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM378_21625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_21630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AM378_21630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AM378_21635 PF06877 Regulator of ribonuclease activity B AM378_21640 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AM378_21645 PF00732 GMC oxidoreductase AM378_21645 PF05199 GMC oxidoreductase AM378_21650 PF00583 Acetyltransferase (GNAT) family AM378_21655 PF10458 Valyl tRNA synthetase tRNA binding arm AM378_21655 PF00133 tRNA synthetases class I (I, L, M and V) AM378_21655 PF08264 Anticodon-binding domain of tRNA AM378_21660 PF04364 DNA polymerase III chi subunit, HolC AM378_21665 PF00883 Cytosol aminopeptidase family, catalytic domain AM378_21665 PF02789 Cytosol aminopeptidase family, N-terminal domain AM378_21670 PF03739 Lipopolysaccharide export system permease LptF/LptG AM378_21675 PF03739 Lipopolysaccharide export system permease LptF/LptG AM378_21680 PF00455 DeoR C terminal sensor domain AM378_21680 PF08220 DeoR-like helix-turn-helix domain AM378_21685 PF03472 Autoinducer binding domain AM378_21685 PF00196 Bacterial regulatory proteins, luxR family AM378_21690 PF00765 Autoinducer synthase AM378_21700 PF07690 Major Facilitator Superfamily AM378_21705 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AM378_21705 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AM378_21710 PF01791 DeoC/LacD family aldolase AM378_21720 PF02447 GntP family permease AM378_21725 PF01370 NAD dependent epimerase/dehydratase family AM378_21730 PF08220 DeoR-like helix-turn-helix domain AM378_21730 PF00455 DeoR C terminal sensor domain AM378_21740 PF00271 Helicase conserved C-terminal domain AM378_21740 PF08463 EcoEI R protein C-terminal AM378_21740 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AM378_21740 PF04851 Type III restriction enzyme, res subunit AM378_21745 PF02384 N-6 DNA Methylase AM378_21750 PF01420 Type I restriction modification DNA specificity domain AM378_21755 PF08845 Toxin SymE, type I toxin-antitoxin system AM378_21805 PF00232 Glycosyl hydrolase family 1 AM378_21820 PF03466 LysR substrate binding domain AM378_21820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_21825 PF02492 CobW/HypB/UreG, nucleotide-binding domain AM378_21825 PF07683 Cobalamin synthesis protein cobW C-terminal domain AM378_21830 PF04328 Selenoprotein, putative AM378_21835 PF13722 5TM C-terminal transporter carbon starvation CstA AM378_21835 PF02554 Carbon starvation protein CstA AM378_21840 PF03466 LysR substrate binding domain AM378_21840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_21845 PF02308 MgtC family AM378_21850 PF00005 ABC transporter AM378_21855 PF00267 Gram-negative porin AM378_21860 PF00005 ABC transporter AM378_21870 PF00982 Glycosyltransferase family 20 AM378_21880 PF00120 Glutamine synthetase, catalytic domain AM378_21900 PF05973 Phage derived protein Gp49-like (DUF891) AM378_21905 PF01381 Helix-turn-helix AM378_21910 PF03466 LysR substrate binding domain AM378_21910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_21915 PF01144 Coenzyme A transferase AM378_21920 PF01144 Coenzyme A transferase AM378_21925 PF00108 Thiolase, N-terminal domain AM378_21925 PF02803 Thiolase, C-terminal domain AM378_21930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AM378_21930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AM378_21940 PF00106 short chain dehydrogenase AM378_21950 PF02311 AraC-like ligand binding domain AM378_21950 PF12833 Helix-turn-helix domain AM378_21960 PF12833 Helix-turn-helix domain AM378_21960 PF06445 GyrI-like small molecule binding domain AM378_21965 PF17969 L,D-transpeptidase C-terminal domain AM378_21965 PF03734 L,D-transpeptidase catalytic domain AM378_21985 PF02472 Biopolymer transport protein ExbD/TolR AM378_22000 PF01618 MotA/TolQ/ExbB proton channel family AM378_22010 PF03576 Peptidase family S58 AM378_22020 PF00171 Aldehyde dehydrogenase family AM378_22025 PF00202 Aminotransferase class-III AM378_22030 PF03466 LysR substrate binding domain AM378_22030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22035 PF00465 Iron-containing alcohol dehydrogenase AM378_22040 PF00196 Bacterial regulatory proteins, luxR family AM378_22045 PF01266 FAD dependent oxidoreductase AM378_22055 PF12146 Serine aminopeptidase, S33 AM378_22060 PF00850 Histone deacetylase domain AM378_22070 PF00196 Bacterial regulatory proteins, luxR family AM378_22075 PF00884 Sulfatase AM378_22080 PF04055 Radical SAM superfamily AM378_22085 PF00324 Amino acid permease AM378_22100 PF17409 MoaF C-terminal domain AM378_22100 PF10703 MoaF N-terminal domain AM378_22110 PF01047 MarR family AM378_22115 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM378_22120 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM378_22125 PF07282 Putative transposase DNA-binding domain AM378_22125 PF01385 Probable transposase AM378_22125 PF12323 Helix-turn-helix domain AM378_22130 PF00171 Aldehyde dehydrogenase family AM378_22135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_22140 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase AM378_22145 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM378_22150 PF03328 HpcH/HpaI aldolase/citrate lyase family AM378_22155 PF07690 Major Facilitator Superfamily AM378_22165 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AM378_22165 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AM378_22170 PF01613 Flavin reductase like domain AM378_22175 PF00144 Beta-lactamase AM378_22180 PF07729 FCD domain AM378_22180 PF00392 Bacterial regulatory proteins, gntR family AM378_22190 PF01557 Fumarylacetoacetate (FAA) hydrolase family AM378_22195 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AM378_22195 PF13378 Enolase C-terminal domain-like AM378_22200 PF04909 Amidohydrolase AM378_22210 PF05336 L-rhamnose mutarotase AM378_22215 PF07690 Major Facilitator Superfamily AM378_22220 PF07690 Major Facilitator Superfamily AM378_22225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22225 PF03466 LysR substrate binding domain AM378_22235 PF00440 Bacterial regulatory proteins, tetR family AM378_22240 PF00990 Diguanylate cyclase, GGDEF domain AM378_22245 PF07256 Protein of unknown function (DUF1435) AM378_22265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22265 PF03466 LysR substrate binding domain AM378_22270 PF00248 Aldo/keto reductase family AM378_22275 PF08468 Methyltransferase small domain N-terminal AM378_22275 PF05175 Methyltransferase small domain AM378_22280 PF03603 DNA polymerase III psi subunit AM378_22285 PF00583 Acetyltransferase (GNAT) family AM378_22290 PF16658 Class II release factor RF3, C-terminal domain AM378_22290 PF00009 Elongation factor Tu GTP binding domain AM378_22290 PF03144 Elongation factor Tu domain 2 AM378_22295 PF04972 BON domain AM378_22300 PF07043 Protein of unknown function (DUF1328) AM378_22305 PF05532 CsbD-like AM378_22310 PF01734 Patatin-like phospholipase AM378_22315 PF01026 TatD related DNase AM378_22320 PF07662 Na+ dependent nucleoside transporter C-terminus AM378_22320 PF07670 Nucleoside recognition AM378_22320 PF01773 Na+ dependent nucleoside transporter N-terminus AM378_22325 PF01791 DeoC/LacD family aldolase AM378_22330 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AM378_22330 PF02885 Glycosyl transferase family, helical bundle domain AM378_22330 PF00591 Glycosyl transferase family, a/b domain AM378_22335 PF01676 Metalloenzyme superfamily AM378_22340 PF01048 Phosphorylase superfamily AM378_22345 PF07804 HipA-like C-terminal domain AM378_22350 PF10144 Bacterial virulence factor haemolysin AM378_22355 PF18429 Domain of unknown function (DUF5609) AM378_22360 PF18073 Rubredoxin metal binding domain AM378_22365 PF13521 AAA domain AM378_22365 PF01381 Helix-turn-helix AM378_22375 PF00107 Zinc-binding dehydrogenase AM378_22375 PF08240 Alcohol dehydrogenase GroES-like domain AM378_22380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22380 PF03466 LysR substrate binding domain AM378_22385 PF00107 Zinc-binding dehydrogenase AM378_22385 PF16884 N-terminal domain of oxidoreductase AM378_22390 PF00106 short chain dehydrogenase AM378_22400 PF12848 ABC transporter AM378_22400 PF00005 ABC transporter AM378_22405 PF00691 OmpA family AM378_22410 PF00990 Diguanylate cyclase, GGDEF domain AM378_22410 PF17152 Periplasmic sensor domain AM378_22415 PF13689 YfiR/HmsC-like AM378_22420 PF01464 Transglycosylase SLT domain AM378_22420 PF14718 Soluble lytic murein transglycosylase L domain AM378_22425 PF01371 Trp repressor protein AM378_22430 PF01931 Protein of unknown function DUF84 AM378_22435 PF00300 Histidine phosphatase superfamily (branch 1) AM378_22440 PF06445 GyrI-like small molecule binding domain AM378_22440 PF12833 Helix-turn-helix domain AM378_22445 PF05981 CreA protein AM378_22450 PF00486 Transcriptional regulatory protein, C terminal AM378_22450 PF00072 Response regulator receiver domain AM378_22455 PF00588 SpoU rRNA Methylase family AM378_22460 PF08254 Threonine leader peptide AM378_22465 PF00742 Homoserine dehydrogenase AM378_22465 PF03447 Homoserine dehydrogenase, NAD binding domain AM378_22465 PF13840 ACT domain AM378_22465 PF01842 ACT domain AM378_22465 PF00696 Amino acid kinase family AM378_22470 PF08544 GHMP kinases C terminal AM378_22470 PF00288 GHMP kinases N terminal domain AM378_22475 PF00291 Pyridoxal-phosphate dependent enzyme AM378_22475 PF14821 Threonine synthase N terminus AM378_22480 PF03883 Peroxide stress protein YaaA AM378_22485 PF01235 Sodium:alanine symporter family AM378_22490 PF00923 Transaldolase/Fructose-6-phosphate aldolase AM378_22495 PF00994 Probable molybdopterin binding domain AM378_22500 PF07690 Major Facilitator Superfamily AM378_22505 PF01184 GPR1/FUN34/yaaH family AM378_22510 PF00012 Hsp70 protein AM378_22515 PF00226 DnaJ domain AM378_22515 PF00684 DnaJ central domain AM378_22515 PF01556 DnaJ C terminal domain AM378_22520 PF06965 Na+/H+ antiporter 1 AM378_22525 PF03466 LysR substrate binding domain AM378_22525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22530 PF01649 Ribosomal protein S20 AM378_22535 PF10837 Protein of unknown function (DUF2575) AM378_22540 PF06574 FAD synthetase AM378_22540 PF01687 Riboflavin kinase AM378_22545 PF08264 Anticodon-binding domain of tRNA AM378_22545 PF00133 tRNA synthetases class I (I, L, M and V) AM378_22545 PF06827 Zinc finger found in FPG and IleRS AM378_22550 PF01252 Signal peptidase (SPase) II AM378_22555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_22560 PF02401 LytB protein AM378_22565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22565 PF03466 LysR substrate binding domain AM378_22575 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AM378_22585 PF01113 Dihydrodipicolinate reductase, N-terminus AM378_22585 PF05173 Dihydrodipicolinate reductase, C-terminus AM378_22590 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AM378_22590 PF00117 Glutamine amidotransferase class-I AM378_22595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AM378_22595 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM378_22595 PF02142 MGS-like domain AM378_22600 PF02525 Flavodoxin-like fold AM378_22605 PF02254 TrkA-N domain AM378_22605 PF00999 Sodium/hydrogen exchanger family AM378_22610 PF01810 LysE type translocator AM378_22615 PF06738 Putative threonine/serine exporter AM378_22620 PF12821 Threonine/Serine exporter, ThrE AM378_22625 PF00186 Dihydrofolate reductase AM378_22635 PF00149 Calcineurin-like phosphoesterase AM378_22640 PF04379 ApaG domain AM378_22645 PF00398 Ribosomal RNA adenine dimethylase AM378_22650 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AM378_22655 PF00639 PPIC-type PPIASE domain AM378_22655 PF09312 SurA N-terminal domain AM378_22660 PF03968 OstA-like protein AM378_22660 PF04453 LPS transport system D AM378_22665 PF00226 DnaJ domain AM378_22665 PF05099 Tellurite resistance protein TerB AM378_22670 PF00849 RNA pseudouridylate synthase AM378_22675 PF00271 Helicase conserved C-terminal domain AM378_22675 PF12137 RNA polymerase recycling family C-terminal AM378_22675 PF00176 SNF2 family N-terminal domain AM378_22675 PF18339 RapA N-terminal Tudor like domain 1 AM378_22675 PF18337 RapA N-terminal Tudor like domain AM378_22680 PF00136 DNA polymerase family B AM378_22680 PF03104 DNA polymerase family B, exonuclease domain AM378_22685 PF09335 SNARE associated Golgi protein AM378_22690 PF01842 ACT domain AM378_22695 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_22695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_22695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_22705 PF00005 ABC transporter AM378_22710 PF00528 Binding-protein-dependent transport system inner membrane component AM378_22720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_22720 PF12793 Sugar transport-related sRNA regulator N-term AM378_22730 PF07690 Major Facilitator Superfamily AM378_22735 PF00939 Sodium:sulfate symporter transmembrane region AM378_22740 PF00694 Aconitase C-terminal domain AM378_22745 PF00330 Aconitase family (aconitate hydratase) AM378_22750 PF00180 Isocitrate/isopropylmalate dehydrogenase AM378_22755 PF08502 LeuA allosteric (dimerisation) domain AM378_22755 PF00682 HMGL-like AM378_22765 PF03466 LysR substrate binding domain AM378_22765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_22770 PF00501 AMP-binding enzyme AM378_22775 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_22775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_22775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_22780 PF10369 Small subunit of acetolactate synthase AM378_22785 PF00356 Bacterial regulatory proteins, lacI family AM378_22785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AM378_22790 PF06610 L-alanine exporter AM378_22795 PF02381 MraZ protein, putative antitoxin-like AM378_22800 PF01795 MraW methylase family AM378_22805 PF04999 Cell division protein FtsL AM378_22810 PF03717 Penicillin-binding Protein dimerisation domain AM378_22810 PF00905 Penicillin binding protein transpeptidase domain AM378_22815 PF01225 Mur ligase family, catalytic domain AM378_22815 PF02875 Mur ligase family, glutamate ligase domain AM378_22815 PF08245 Mur ligase middle domain AM378_22820 PF08245 Mur ligase middle domain AM378_22820 PF01225 Mur ligase family, catalytic domain AM378_22820 PF02875 Mur ligase family, glutamate ligase domain AM378_22825 PF00953 Glycosyl transferase family 4 AM378_22825 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AM378_22830 PF02875 Mur ligase family, glutamate ligase domain AM378_22830 PF08245 Mur ligase middle domain AM378_22835 PF01098 Cell cycle protein AM378_22840 PF03033 Glycosyltransferase family 28 N-terminal domain AM378_22840 PF04101 Glycosyltransferase family 28 C-terminal domain AM378_22845 PF02875 Mur ligase family, glutamate ligase domain AM378_22845 PF08245 Mur ligase middle domain AM378_22845 PF01225 Mur ligase family, catalytic domain AM378_22850 PF07478 D-ala D-ala ligase C-terminus AM378_22850 PF01820 D-ala D-ala ligase N-terminus AM378_22855 PF03799 Cell division protein FtsQ AM378_22855 PF08478 POTRA domain, FtsQ-type AM378_22860 PF02491 SHS2 domain inserted in FTSA AM378_22865 PF00091 Tubulin/FtsZ family, GTPase domain AM378_22865 PF12327 FtsZ family, C-terminal domain AM378_22870 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AM378_22880 PF06558 Secretion monitor precursor protein (SecM) AM378_22885 PF07516 SecA Wing and Scaffold domain AM378_22885 PF07517 SecA DEAD-like domain AM378_22885 PF01043 SecA preprotein cross-linking domain AM378_22885 PF02810 SEC-C motif AM378_22890 PF00293 NUDIX domain AM378_22895 PF03884 DNA gyrase inhibitor YacG AM378_22900 PF07072 Cell division protein AM378_22905 PF01121 Dephospho-CoA kinase AM378_22910 PF00478 IMP dehydrogenase / GMP reductase domain AM378_22915 PF00482 Type II secretion system (T2SS), protein F AM378_22920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AM378_22920 PF00437 Type II/IV secretion system protein AM378_22925 PF07963 Prokaryotic N-terminal methylation motif AM378_22930 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AM378_22930 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AM378_22935 PF01510 N-acetylmuramoyl-L-alanine amidase AM378_22940 PF17113 Regulatory signalling modulator protein AmpE AM378_22945 PF00202 Aminotransferase class-III AM378_22950 PF00654 Voltage gated chloride channel AM378_22955 PF01521 Iron-sulphur cluster biosynthesis AM378_22965 PF03458 UPF0126 domain AM378_22970 PF01497 Periplasmic binding protein AM378_22975 PF01048 Phosphorylase superfamily AM378_22980 PF13286 Phosphohydrolase-associated domain AM378_22980 PF01966 HD domain AM378_22985 PF00595 PDZ domain AM378_22990 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AM378_22990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_22990 PF00512 His Kinase A (phospho-acceptor) domain AM378_22990 PF01627 Hpt domain AM378_22990 PF00072 Response regulator receiver domain AM378_22990 PF00672 HAMP domain AM378_22995 PF01938 TRAM domain AM378_22995 PF05958 tRNA (Uracil-5-)-methyltransferase AM378_23000 PF02824 TGS domain AM378_23000 PF13291 ACT domain AM378_23000 PF04607 Region found in RelA / SpoT proteins AM378_23005 PF03819 MazG nucleotide pyrophosphohydrolase domain AM378_23010 PF06418 CTP synthase N-terminus AM378_23010 PF00117 Glutamine amidotransferase class-I AM378_23015 PF03952 Enolase, N-terminal domain AM378_23015 PF00113 Enolase, C-terminal TIM barrel domain AM378_23030 PF01053 Cys/Met metabolism PLP-dependent enzyme AM378_23035 PF00324 Amino acid permease AM378_23040 PF00221 Aromatic amino acid lyase AM378_23045 PF01175 Urocanase Rossmann-like domain AM378_23045 PF17392 Urocanase C-terminal domain AM378_23045 PF17391 Urocanase N-terminal domain AM378_23050 PF07690 Major Facilitator Superfamily AM378_23055 PF04055 Radical SAM superfamily AM378_23060 PF01242 6-pyruvoyl tetrahydropterin synthase AM378_23065 PF00258 Flavodoxin AM378_23065 PF00667 FAD binding domain AM378_23065 PF00175 Oxidoreductase NAD-binding domain AM378_23070 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AM378_23070 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AM378_23075 PF01507 Phosphoadenosine phosphosulfate reductase family AM378_23080 PF04389 Peptidase family M28 AM378_23085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AM378_23085 PF14824 Sirohaem biosynthesis protein central AM378_23085 PF10414 Sirohaem synthase dimerisation region AM378_23090 PF01507 Phosphoadenosine phosphosulfate reductase family AM378_23095 PF00009 Elongation factor Tu GTP binding domain AM378_23105 PF12084 Protein of unknown function (DUF3561) AM378_23110 PF00005 ABC transporter AM378_23115 PF00528 Binding-protein-dependent transport system inner membrane component AM378_23120 PF00497 Bacterial extracellular solute-binding proteins, family 3 AM378_23125 PF04977 Septum formation initiator AM378_23130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AM378_23135 PF02542 YgbB family AM378_23140 PF01142 tRNA pseudouridine synthase D (TruD) AM378_23145 PF01975 Survival protein SurE AM378_23155 PF01551 Peptidase family M23 AM378_23155 PF01476 LysM domain AM378_23160 PF04539 Sigma-70 region 3 AM378_23160 PF04545 Sigma-70, region 4 AM378_23160 PF04542 Sigma-70 region 2 AM378_23160 PF00140 Sigma-70 factor, region 1.2 AM378_23165 PF01624 MutS domain I AM378_23165 PF05188 MutS domain II AM378_23165 PF05192 MutS domain III AM378_23165 PF00488 MutS domain V AM378_23165 PF05190 MutS family domain IV AM378_23185 PF00248 Aldo/keto reductase family AM378_23195 PF03466 LysR substrate binding domain AM378_23195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_23200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AM378_23205 PF02378 Phosphotransferase system, EIIC AM378_23210 PF00232 Glycosyl hydrolase family 1 AM378_23215 PF12833 Helix-turn-helix domain AM378_23215 PF07883 Cupin domain AM378_23220 PF04794 YdjC-like protein AM378_23225 PF07690 Major Facilitator Superfamily AM378_23230 PF02464 Competence-damaged protein AM378_23235 PF00154 recA bacterial DNA recombination protein AM378_23240 PF02631 RecX family AM378_23245 PF01411 tRNA synthetases class II (A) AM378_23245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AM378_23245 PF02272 DHHA1 domain AM378_23250 PF02599 Global regulator protein family AM378_23275 PF13419 Haloacid dehalogenase-like hydrolase AM378_23280 PF09335 SNARE associated Golgi protein AM378_23285 PF04262 Glutamate-cysteine ligase AM378_23290 PF02664 S-Ribosylhomocysteinase (LuxS) AM378_23295 PF00571 CBS domain AM378_23295 PF03471 Transporter associated domain AM378_23295 PF01595 Cyclin M transmembrane N-terminal domain AM378_23300 PF01578 Cytochrome C assembly protein AM378_23305 PF02978 Signal peptide binding domain AM378_23305 PF02881 SRP54-type protein, helical bundle domain AM378_23305 PF00448 SRP54-type protein, GTPase domain AM378_23310 PF00886 Ribosomal protein S16 AM378_23315 PF05239 PRC-barrel domain AM378_23315 PF01782 RimM N-terminal domain AM378_23320 PF01746 tRNA (Guanine-1)-methyltransferase AM378_23325 PF01245 Ribosomal protein L19 AM378_23330 PF04606 Ogr/Delta-like zinc finger AM378_23345 PF04338 Protein of unknown function, DUF481 AM378_23350 PF00793 DAHP synthetase I family AM378_23355 PF02153 Prephenate dehydrogenase AM378_23355 PF01817 Chorismate mutase type II AM378_23360 PF00800 Prephenate dehydratase AM378_23360 PF01817 Chorismate mutase type II AM378_23370 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AM378_23375 PF13525 Outer membrane lipoprotein AM378_23385 PF01479 S4 domain AM378_23385 PF00849 RNA pseudouridylate synthase AM378_23395 PF17871 AAA lid domain AM378_23395 PF02861 Clp amino terminal domain, pathogenicity island component AM378_23395 PF00004 ATPase family associated with various cellular activities (AAA) AM378_23395 PF07724 AAA domain (Cdc48 subfamily) AM378_23395 PF10431 C-terminal, D2-small domain, of ClpB protein AM378_23425 PF00248 Aldo/keto reductase family AM378_23430 PF03466 LysR substrate binding domain AM378_23430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_23435 PF03372 Endonuclease/Exonuclease/phosphatase family AM378_23440 PF01476 LysM domain AM378_23440 PF01464 Transglycosylase SLT domain AM378_23445 PF16123 Hydroxyacylglutathione hydrolase C-terminus AM378_23445 PF00753 Metallo-beta-lactamase superfamily AM378_23450 PF08241 Methyltransferase domain AM378_23455 PF00075 RNase H AM378_23460 PF00929 Exonuclease AM378_23470 PF00593 TonB dependent receptor AM378_23470 PF07715 TonB-dependent Receptor Plug Domain AM378_23485 PF00266 Aminotransferase class-V AM378_23490 PF07687 Peptidase dimerisation domain AM378_23490 PF01546 Peptidase family M20/M25/M40 AM378_23495 PF00795 Carbon-nitrogen hydrolase AM378_23500 PF00155 Aminotransferase class I and II AM378_23505 PF00596 Class II Aldolase and Adducin N-terminal domain AM378_23515 PF03079 ARD/ARD' family AM378_23520 PF01008 Initiation factor 2 subunit family AM378_23525 PF01636 Phosphotransferase enzyme family AM378_23530 PF01848 Hok/gef family AM378_23535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AM378_23535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AM378_23535 PF09317 Domain of unknown function (DUF1974) AM378_23540 PF13580 SIS domain AM378_23545 PF13230 Glutamine amidotransferases class-II AM378_23550 PF03734 L,D-transpeptidase catalytic domain AM378_23555 PF11973 NQRA C-terminal domain AM378_23555 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AM378_23560 PF03116 NQR2, RnfD, RnfE family AM378_23565 PF04205 FMN-binding domain AM378_23570 PF02508 Rnf-Nqr subunit, membrane protein AM378_23575 PF02508 Rnf-Nqr subunit, membrane protein AM378_23580 PF00970 Oxidoreductase FAD-binding domain AM378_23580 PF00111 2Fe-2S iron-sulfur cluster binding domain AM378_23580 PF00175 Oxidoreductase NAD-binding domain AM378_23585 PF02424 ApbE family AM378_23590 PF04400 (Na+)-NQR maturation NqrM AM378_23610 PF03009 Glycerophosphoryl diester phosphodiesterase family AM378_23615 PF11798 IMS family HHH motif AM378_23615 PF11799 impB/mucB/samB family C-terminal domain AM378_23615 PF00817 impB/mucB/samB family AM378_23620 PF07687 Peptidase dimerisation domain AM378_23620 PF01546 Peptidase family M20/M25/M40 AM378_23625 PF00156 Phosphoribosyl transferase domain AM378_23635 PF07417 Sigma factor-binding transcriptional regulator Crl AM378_23640 PF01472 PUA domain AM378_23640 PF00696 Amino acid kinase family AM378_23645 PF00171 Aldehyde dehydrogenase family AM378_23655 PF13356 Arm DNA-binding domain AM378_23655 PF00589 Phage integrase family AM378_23680 PF17345 Family of unknown function (DUF5375) AM378_23725 PF00419 Fimbrial protein AM378_23730 PF00419 Fimbrial protein AM378_23735 PF00577 Outer membrane usher protein AM378_23735 PF13953 PapC C-terminal domain AM378_23735 PF13954 PapC N-terminal domain AM378_23740 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AM378_23740 PF02753 Pili assembly chaperone PapD, C-terminal domain AM378_23755 PF00419 Fimbrial protein AM378_23780 PF07690 Major Facilitator Superfamily AM378_23785 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AM378_23790 PF03466 LysR substrate binding domain AM378_23790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_23795 PF05154 TM2 domain AM378_23825 PF01292 Prokaryotic cytochrome b561 AM378_23830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AM378_23835 PF01638 HxlR-like helix-turn-helix AM378_23840 PF02525 Flavodoxin-like fold AM378_23855 PF01323 DSBA-like thioredoxin domain AM378_23860 PF14525 AraC-binding-like domain AM378_23860 PF12833 Helix-turn-helix domain AM378_23865 PF00171 Aldehyde dehydrogenase family AM378_23870 PF01810 LysE type translocator AM378_23875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AM378_23875 PF02805 Metal binding domain of Ada AM378_23875 PF12833 Helix-turn-helix domain AM378_23875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AM378_23880 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA AM378_23885 PF09313 Domain of unknown function (DUF1971) AM378_23885 PF03848 Tellurite resistance protein TehB AM378_23890 PF07759 Protein of unknown function (DUF1615) AM378_23895 PF00205 Thiamine pyrophosphate enzyme, central domain AM378_23895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AM378_23895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AM378_23905 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP AM378_23910 PF10696 Protein of unknown function (DUF2501) AM378_23925 PF00455 DeoR C terminal sensor domain AM378_23925 PF08220 DeoR-like helix-turn-helix domain AM378_23930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AM378_23935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AM378_23935 PF03466 LysR substrate binding domain AM378_23940 PF05726 Pirin C-terminal cupin domain AM378_23940 PF02678 Pirin AM378_23945 PF00857 Isochorismatase family AM378_23960 PF04134 Protein of unknown function, DUF393 AM378_23970 PF13302 Acetyltransferase (GNAT) domain AM378_23975 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) AM378_23985 PF08241 Methyltransferase domain AM378_23990 PF00230 Major intrinsic protein AM378_24020 PF07715 TonB-dependent Receptor Plug Domain AM378_24020 PF00593 TonB dependent receptor AM378_24025 PF00583 Acetyltransferase (GNAT) family AM378_24030 PF01202 Shikimate kinase AM378_24045 PF16362 YaiA protein AM378_24050 PF04542 Sigma-70 region 2 AM378_24050 PF08281 Sigma-70, region 4 AM378_24065 PF06438 Heme-binding protein A (HasA) AM378_24070 PF00005 ABC transporter AM378_24070 PF00664 ABC transporter transmembrane region AM378_24075 PF00529 HlyD membrane-fusion protein of T1SS AM378_24085 PF01614 Bacterial transcriptional regulator AM378_24085 PF09339 IclR helix-turn-helix domain AM378_24100 PF07302 AroM protein AM378_24105 PF06865 Pyrimidine/purine nucleoside phosphorylase AM378_24110 PF04381 Putative exonuclease, RdgC AM378_24115 PF00480 ROK family AM378_24130 PF00874 PRD domain AM378_24130 PF03123 CAT RNA binding domain AM378_24135 PF13476 AAA domain AM378_24140 PF00149 Calcineurin-like phosphoesterase AM378_24140 PF12320 Type 5 capsule protein repressor C-terminal domain AM378_24145 PF00072 Response regulator receiver domain AM378_24145 PF00486 Transcriptional regulatory protein, C terminal AM378_24150 PF11808 Phosphate regulon sensor protein PhoR AM378_24150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AM378_24150 PF00512 His Kinase A (phospho-acceptor) domain AM378_24150 PF00989 PAS fold AM378_24155 PF12849 PBP superfamily domain AM378_24160 PF05525 Branched-chain amino acid transport protein AM378_24165 PF00324 Amino acid permease AM378_24175 PF00924 Mechanosensitive ion channel AM378_24180 PF02903 Alpha amylase, N-terminal ig-like domain AM378_24180 PF00128 Alpha amylase, catalytic domain AM378_24190 PF10417 C-terminal domain of 1-Cys peroxiredoxin AM378_24190 PF00578 AhpC/TSA family AM378_24195 PF04336 Acyl carrier protein phosphodiesterase AM378_24200 PF02547 Queuosine biosynthesis protein AM378_24205 PF01702 Queuine tRNA-ribosyltransferase AM378_24210 PF02699 Preprotein translocase subunit AM378_24215 PF07549 SecD/SecF GG Motif AM378_24215 PF02355 Protein export membrane protein AM378_24215 PF13721 SecD export protein N-terminal TM region AM378_24220 PF07549 SecD/SecF GG Motif AM378_24220 PF02355 Protein export membrane protein AM378_24225 PF11622 Protein of unknown function (DUF3251) AM378_24230 PF03477 ATP cone domain AM378_24235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AM378_24235 PF01872 RibD C-terminal domain AM378_24240 PF00885 6,7-dimethyl-8-ribityllumazine synthase AM378_24245 PF01029 NusB family AM378_24250 PF02769 AIR synthase related protein, C-terminal domain AM378_24250 PF00586 AIR synthase related protein, N-terminal domain AM378_24255 PF04608 Phosphatidylglycerophosphatase A AM378_24260 PF00248 Aldo/keto reductase family AM378_24265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AM378_24265 PF02779 Transketolase, pyrimidine binding domain AM378_24265 PF02780 Transketolase, C-terminal domain AM378_24270 PF00348 Polyprenyl synthetase AM378_24275 PF02609 Exonuclease VII small subunit AM378_24280 PF02568 Thiamine biosynthesis protein (ThiI) AM378_24280 PF02926 THUMP domain AM378_24285 PF04829 Pre-toxin domain with VENN motif AM378_24285 PF05860 haemagglutination activity domain AM378_24285 PF13332 Hemagglutinin repeat AM378_24285 PF13018 Extended Signal Peptide of Type V secretion system AM378_24290 PF08479 POTRA domain, ShlB-type AM378_24290 PF17287 POTRA domain AM378_24290 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AM378_24295 PF01965 DJ-1/PfpI family AM378_24300 PF02558 Ketopantoate reductase PanE/ApbA AM378_24300 PF08546 Ketopantoate reductase PanE/ApbA C terminal AM378_24305 PF04461 Protein of unknown function (DUF520) AM378_24310 PF07690 Major Facilitator Superfamily AM378_24315 PF01040 UbiA prenyltransferase family AM378_24320 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AM378_24325 PF00510 Cytochrome c oxidase subunit III AM378_24330 PF00115 Cytochrome C and Quinol oxidase polypeptide I AM378_24335 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AM378_24335 PF06481 COX Aromatic Rich Motif AM378_24340 PF07690 Major Facilitator Superfamily AM378_24345 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AM378_24345 PF03923 Uncharacterized lipoprotein AM378_24350 PF01722 BolA-like protein AM378_24355 PF05697 Bacterial trigger factor protein (TF) AM378_24355 PF05698 Bacterial trigger factor protein (TF) C-terminus AM378_24355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AM378_24360 PF00574 Clp protease AM378_24365 PF06689 ClpX C4-type zinc finger AM378_24365 PF10431 C-terminal, D2-small domain, of ClpB protein AM378_24365 PF07724 AAA domain (Cdc48 subfamily) AM378_24370 PF05362 Lon protease (S16) C-terminal proteolytic domain AM378_24370 PF00004 ATPase family associated with various cellular activities (AAA) AM378_24370 PF02190 ATP-dependent protease La (LON) substrate-binding domain AM378_24375 PF00216 Bacterial DNA-binding protein