AM378_00010 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM378_00040 SM00344 helix_turn_helix ASNC type AM378_00045 SM00382 ATPases associated with a variety of cellular activities AM378_00050 SM00382 ATPases associated with a variety of cellular activities AM378_00055 SM00938 Nitrogen regulatory protein P-II AM378_00085 SM00862 Transcriptional regulatory protein, C terminal AM378_00110 SM00382 ATPases associated with a variety of cellular activities AM378_00190 SM00382 ATPases associated with a variety of cellular activities AM378_00255 SM00382 ATPases associated with a variety of cellular activities AM378_00265 SM00493 AM378_00265 AM378_00270 SM00387 Histidine kinase-like ATPases AM378_00325 SM00342 helix_turn_helix, arabinose operon control protein AM378_00350 SM00823 Phosphopantetheine attachment site AM378_00385 SM00422 helix_turn_helix, mercury resistance AM378_00395 SM00244 prohibitin homologues AM378_00410 SM00346 helix_turn_helix isocitrate lyase regulation AM378_00490 SM00822 AM378_00490 AM378_00500 SM00382 ATPases associated with a variety of cellular activities AM378_00520 SM01001 AIR carboxylase AM378_00535 SM00840 AM378_00535 AM378_00575 SM00267 diguanylate cyclase AM378_00580 SM00357 Cold shock protein domain AM378_00590 SM00382 ATPases associated with a variety of cellular activities AM378_00620 SM00357 Cold shock protein domain AM378_00640 SM00267 diguanylate cyclase AM378_00650 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_00665 SM00936 Penicillin-binding protein 5, C-terminal domain AM378_00735 SM00382 ATPases associated with a variety of cellular activities AM378_00750 SM00062 Bacterial periplasmic substrate-binding proteins AM378_00760 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_00760 SM01091 Transporter associated domain AM378_00780 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_00825 SM00060 Fibronectin type 3 domain AM378_00825 SM00495 Chitin-binding domain type 3 AM378_00825 SM00636 AM378_00825 AM378_00870 SM01081 Putative carbohydrate binding domain AM378_00915 SM00448 cheY-homologous receiver domain AM378_00915 SM00862 Transcriptional regulatory protein, C terminal AM378_00920 SM00387 Histidine kinase-like ATPases AM378_00920 SM00388 His Kinase A (phosphoacceptor) domain AM378_00970 SM00796 Allophanate hydrolase subunit 1 AM378_00975 SM00797 Allophanate hydrolase subunit 2 AM378_01000 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM378_01000 SM01232 AM378_01000 AM378_01030 SM00861 Transketolase, pyrimidine binding domain AM378_01045 SM00881 CoA binding domain AM378_01170 SM00062 Bacterial periplasmic substrate-binding proteins AM378_01170 SM00073 Histidine Phosphotransfer domain AM378_01170 SM00387 Histidine kinase-like ATPases AM378_01170 SM00388 His Kinase A (phosphoacceptor) domain AM378_01170 SM00448 cheY-homologous receiver domain AM378_01175 SM00421 helix_turn_helix, Lux Regulon AM378_01175 SM00448 cheY-homologous receiver domain AM378_01195 SM00855 Phosphoglycerate mutase family AM378_01230 SM00382 ATPases associated with a variety of cellular activities AM378_01260 SM00382 ATPases associated with a variety of cellular activities AM378_01280 SM00382 ATPases associated with a variety of cellular activities AM378_01310 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_01310 SM00876 Biotin and Thiamin Synthesis associated domain AM378_01330 SM00382 ATPases associated with a variety of cellular activities AM378_01335 SM00487 DEAD-like helicases superfamily AM378_01335 SM00490 helicase superfamily c-terminal domain AM378_01350 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_01355 SM00852 Probable molybdopterin binding domain AM378_01390 SM00382 ATPases associated with a variety of cellular activities AM378_01405 SM00487 DEAD-like helicases superfamily AM378_01405 SM00490 helicase superfamily c-terminal domain AM378_01425 SM00382 ATPases associated with a variety of cellular activities AM378_01445 SM00387 Histidine kinase-like ATPases AM378_01450 SM00421 helix_turn_helix, Lux Regulon AM378_01450 SM00448 cheY-homologous receiver domain AM378_01460 SM00822 AM378_01460 AM378_01500 SM00342 helix_turn_helix, arabinose operon control protein AM378_01505 SM00996 S-adenosyl-L-homocysteine hydrolase AM378_01505 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AM378_01570 SM00382 ATPases associated with a variety of cellular activities AM378_01590 SM00091 PAS domain AM378_01615 SM00062 Bacterial periplasmic substrate-binding proteins AM378_01630 SM01217 AM378_01630 AM378_01660 SM00382 ATPases associated with a variety of cellular activities AM378_01680 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_01695 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM378_01710 SM00507 HNH nucleases AM378_01745 SM00342 helix_turn_helix, arabinose operon control protein AM378_01755 SM00090 RIO-like kinase AM378_01760 SM00642 Alpha-amylase domain AM378_01780 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_01820 SM00382 ATPases associated with a variety of cellular activities AM378_01820 SM00930 AM378_01820 AM378_01855 SM00382 ATPases associated with a variety of cellular activities AM378_01880 SM01276 AM378_01880 AM378_01890 SM00796 Allophanate hydrolase subunit 1 AM378_01890 SM00797 Allophanate hydrolase subunit 2 AM378_01890 SM00878 Biotin carboxylase C-terminal domain AM378_01895 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_01895 SM00895 AM378_01895 AM378_01920 SM00382 ATPases associated with a variety of cellular activities AM378_01960 SM00450 Rhodanese Homology Domain AM378_01970 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_02030 SM00382 ATPases associated with a variety of cellular activities AM378_02080 SM00530 Helix-turn-helix XRE-family like proteins AM378_02120 SM00487 DEAD-like helicases superfamily AM378_02120 SM00488 AM378_02120 AM378_02120 SM00491 AM378_02120 AM378_02125 SM00344 helix_turn_helix ASNC type AM378_02135 SM00382 ATPases associated with a variety of cellular activities AM378_02160 SM00530 Helix-turn-helix XRE-family like proteins AM378_02185 SM00947 Carbonic anhydrase AM378_02195 SM00903 Flavin reductase like domain AM378_02210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM378_02210 SM00091 PAS domain AM378_02210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM378_02220 SM00382 ATPases associated with a variety of cellular activities AM378_02230 SM00062 Bacterial periplasmic substrate-binding proteins AM378_02230 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM378_02290 SM01007 Class II Aldolase and Adducin N-terminal domain AM378_02305 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_02305 SM01134 AM378_02305 AM378_02330 SM00448 cheY-homologous receiver domain AM378_02330 SM00862 Transcriptional regulatory protein, C terminal AM378_02335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_02335 SM00387 Histidine kinase-like ATPases AM378_02335 SM00388 His Kinase A (phosphoacceptor) domain AM378_02340 SM00862 Transcriptional regulatory protein, C terminal AM378_02345 SM00421 helix_turn_helix, Lux Regulon AM378_02375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_02375 SM00387 Histidine kinase-like ATPases AM378_02375 SM00388 His Kinase A (phosphoacceptor) domain AM378_02380 SM00448 cheY-homologous receiver domain AM378_02380 SM00862 Transcriptional regulatory protein, C terminal AM378_02430 SM00421 helix_turn_helix, Lux Regulon AM378_02435 SM00052 Putative diguanylate phosphodiesterase AM378_02460 SM00342 helix_turn_helix, arabinose operon control protein AM378_02470 SM00098 Alkaline phosphatase homologues AM378_02480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM378_02510 SM01116 AM378_02510 AM378_02515 SM00947 Carbonic anhydrase AM378_02530 SM00382 ATPases associated with a variety of cellular activities AM378_02540 SM00852 Probable molybdopterin binding domain AM378_02555 SM00382 ATPases associated with a variety of cellular activities AM378_02590 SM00829 Enoylreductase AM378_02615 SM00354 helix_turn _helix lactose operon repressor AM378_02625 SM00382 ATPases associated with a variety of cellular activities AM378_02640 SM00919 Malic enzyme, NAD binding domain AM378_02640 SM01274 AM378_02640 AM378_02680 SM00014 Acid phosphatase homologues AM378_02705 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_02705 SM01091 Transporter associated domain AM378_02725 SM00226 Low molecular weight phosphatase family AM378_02740 SM00858 AM378_02740 AM378_02805 SM00382 ATPases associated with a variety of cellular activities AM378_02850 SM00382 ATPases associated with a variety of cellular activities AM378_02880 SM01350 AM378_02880 AM378_02990 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_02995 SM00936 Penicillin-binding protein 5, C-terminal domain AM378_03055 SM00421 helix_turn_helix, Lux Regulon AM378_03070 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_03070 SM01134 AM378_03070 AM378_03075 SM01133 AM378_03075 AM378_03085 SM00014 Acid phosphatase homologues AM378_03135 SM00248 ankyrin repeats AM378_03220 SM00382 ATPases associated with a variety of cellular activities AM378_03255 SM00062 Bacterial periplasmic substrate-binding proteins AM378_03255 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM378_03270 SM00062 Bacterial periplasmic substrate-binding proteins AM378_03270 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM378_03275 SM00382 ATPases associated with a variety of cellular activities AM378_03290 SM00644 AM378_03290 AM378_03365 SM00382 ATPases associated with a variety of cellular activities AM378_03370 SM00357 Cold shock protein domain AM378_03380 SM00382 ATPases associated with a variety of cellular activities AM378_03380 SM01086 C-terminal, D2-small domain, of ClpB protein AM378_03385 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_03395 SM00382 ATPases associated with a variety of cellular activities AM378_03400 SM00382 ATPases associated with a variety of cellular activities AM378_03410 SM00344 helix_turn_helix ASNC type AM378_03415 SM00843 AM378_03415 AM378_03425 SM00382 ATPases associated with a variety of cellular activities AM378_03465 SM00870 AM378_03465 AM378_03485 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_03490 SM00411 bacterial (prokaryotic) histone like domain AM378_03495 SM00849 Metallo-beta-lactamase superfamily AM378_03500 SM00382 ATPases associated with a variety of cellular activities AM378_03510 SM01150 AM378_03510 AM378_03515 SM00357 Cold shock protein domain AM378_03520 SM00357 Cold shock protein domain AM378_03580 SM00849 Metallo-beta-lactamase superfamily AM378_03605 SM00267 diguanylate cyclase AM378_03615 SM00382 ATPases associated with a variety of cellular activities AM378_03630 SM00062 Bacterial periplasmic substrate-binding proteins AM378_03655 SM00981 AM378_03655 AM378_03660 SM00382 ATPases associated with a variety of cellular activities AM378_03685 SM00825 Beta-ketoacyl synthase AM378_03740 SM00851 MGS-like domain AM378_03750 SM00881 CoA binding domain AM378_03755 SM00992 Hemimethylated DNA-binding protein YccV like AM378_03760 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AM378_03805 SM00862 Transcriptional regulatory protein, C terminal AM378_03810 SM00421 helix_turn_helix, Lux Regulon AM378_03845 SM00422 helix_turn_helix, mercury resistance AM378_03865 SM00477 DNA/RNA non-specific endonuclease AM378_03865 SM00892 DNA/RNA non-specific endonuclease AM378_03885 SM00530 Helix-turn-helix XRE-family like proteins AM378_03955 SM00421 helix_turn_helix, Lux Regulon AM378_03985 SM01130 AM378_03985 AM378_03990 SM00342 helix_turn_helix, arabinose operon control protein AM378_04035 SM00421 helix_turn_helix, Lux Regulon AM378_04035 SM00448 cheY-homologous receiver domain AM378_04040 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM378_04040 SM00465 GIY-YIG type nucleases (URI domain) AM378_04105 SM00382 ATPases associated with a variety of cellular activities AM378_04115 SM00465 GIY-YIG type nucleases (URI domain) AM378_04135 SM01091 Transporter associated domain AM378_04180 SM00917 LeuA allosteric (dimerisation) domain AM378_04185 SM00342 helix_turn_helix, arabinose operon control protein AM378_04190 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM378_04235 SM00450 Rhodanese Homology Domain AM378_04240 SM00867 YceI-like domain AM378_04255 SM00829 Enoylreductase AM378_04265 SM00421 helix_turn_helix, Lux Regulon AM378_04300 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_04310 SM00363 S4 RNA-binding domain AM378_04340 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM378_04345 SM00822 AM378_04345 AM378_04355 SM00825 Beta-ketoacyl synthase AM378_04395 SM00529 Helix-turn-helix diphteria tox regulatory element AM378_04405 SM00822 AM378_04405 AM378_04415 SM00062 Bacterial periplasmic substrate-binding proteins AM378_04465 SM01321 AM378_04465 AM378_04485 SM00342 helix_turn_helix, arabinose operon control protein AM378_04515 SM00481 DNA polymerase alpha chain like domain AM378_04535 SM00479 AM378_04535 AM378_04610 SM00448 cheY-homologous receiver domain AM378_04615 SM00387 Histidine kinase-like ATPases AM378_04620 SM01133 AM378_04620 AM378_04630 SM00382 ATPases associated with a variety of cellular activities AM378_04655 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_04655 SM00895 AM378_04655 AM378_04695 SM00354 helix_turn _helix lactose operon repressor AM378_04700 SM01038 Beta galactosidase small chain AM378_04715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM378_04760 SM00421 helix_turn_helix, Lux Regulon AM378_04810 SM01400 AM378_04810 AM378_04830 SM00937 AM378_04830 AM378_04865 SM00487 DEAD-like helicases superfamily AM378_04865 SM00490 helicase superfamily c-terminal domain AM378_04865 SM00982 AM378_04865 AM378_04865 SM01058 CarD-like/TRCF domain AM378_04880 SM00382 ATPases associated with a variety of cellular activities AM378_04930 SM00382 ATPases associated with a variety of cellular activities AM378_04960 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AM378_04965 SM00387 Histidine kinase-like ATPases AM378_04965 SM00388 His Kinase A (phosphoacceptor) domain AM378_04970 SM00448 cheY-homologous receiver domain AM378_04970 SM00862 Transcriptional regulatory protein, C terminal AM378_04980 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_04980 SM00866 AM378_04980 AM378_04985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_05035 SM01329 AM378_05035 AM378_05115 SM00357 Cold shock protein domain AM378_05150 SM00530 Helix-turn-helix XRE-family like proteins AM378_05160 SM01230 AM378_05160 AM378_05200 SM00830 Chorismate mutase type II AM378_05220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_05220 SM00866 AM378_05220 AM378_05235 SM00354 helix_turn _helix lactose operon repressor AM378_05240 SM00640 Glycosyl hydrolases family 32 AM378_05275 SM01022 AM378_05275 AM378_05290 SM00972 Spore Coat Protein U domain AM378_05305 SM00972 Spore Coat Protein U domain AM378_05310 SM00972 Spore Coat Protein U domain AM378_05315 SM00972 Spore Coat Protein U domain AM378_05335 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM378_05340 SM00945 ProQ/FINO family AM378_05345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM378_05345 SM00245 tail specific protease AM378_05365 SM00346 helix_turn_helix isocitrate lyase regulation AM378_05380 SM00382 ATPases associated with a variety of cellular activities AM378_05390 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_05390 SM00866 AM378_05390 AM378_05445 SM00382 ATPases associated with a variety of cellular activities AM378_05505 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM378_05530 SM00873 B3/4 domain AM378_05530 SM00874 tRNA synthetase B5 domain AM378_05530 SM00896 Ferredoxin-fold anticodon binding domain AM378_05535 SM00411 bacterial (prokaryotic) histone like domain AM378_05555 SM00382 ATPases associated with a variety of cellular activities AM378_05605 SM00052 Putative diguanylate phosphodiesterase AM378_05615 SM00382 ATPases associated with a variety of cellular activities AM378_05705 SM00382 ATPases associated with a variety of cellular activities AM378_05790 SM00354 helix_turn _helix lactose operon repressor AM378_05815 SM00479 AM378_05815 AM378_05885 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_05910 SM00363 S4 RNA-binding domain AM378_05930 SM01130 AM378_05930 AM378_05940 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM378_05980 SM00530 Helix-turn-helix XRE-family like proteins AM378_05995 SM00478 endonuclease III AM378_05995 SM00525 AM378_05995 AM378_06005 SM00900 AM378_06005 AM378_06015 SM00342 helix_turn_helix, arabinose operon control protein AM378_06060 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_06060 SM01134 AM378_06060 AM378_06085 SM00354 helix_turn _helix lactose operon repressor AM378_06180 SM00422 helix_turn_helix, mercury resistance AM378_06190 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_06190 SM00382 ATPases associated with a variety of cellular activities AM378_06240 SM00965 Secretin and TonB N terminus short domain AM378_06265 SM00382 ATPases associated with a variety of cellular activities AM378_06280 SM00823 Phosphopantetheine attachment site AM378_06285 SM00823 Phosphopantetheine attachment site AM378_06340 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_06350 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM378_06390 SM00382 ATPases associated with a variety of cellular activities AM378_06405 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM378_06430 SM00822 AM378_06430 AM378_06435 SM00849 Metallo-beta-lactamase superfamily AM378_06440 SM00342 helix_turn_helix, arabinose operon control protein AM378_06460 SM00342 helix_turn_helix, arabinose operon control protein AM378_06485 SM00835 Cupin AM378_06500 SM01061 CAT RNA binding domain AM378_06525 SM00235 Zinc-dependent metalloprotease AM378_06580 SM00342 helix_turn_helix, arabinose operon control protein AM378_06605 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_06635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM378_06635 SM00319 Homologues of the ligand binding domain of Tar AM378_06680 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_06680 SM01134 AM378_06680 AM378_06745 SM00849 Metallo-beta-lactamase superfamily AM378_06750 SM00829 Enoylreductase AM378_06760 SM00382 ATPases associated with a variety of cellular activities AM378_06765 SM00062 Bacterial periplasmic substrate-binding proteins AM378_06775 SM00052 Putative diguanylate phosphodiesterase AM378_06775 SM00267 diguanylate cyclase AM378_06780 SM00235 Zinc-dependent metalloprotease AM378_06795 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_06795 SM00895 AM378_06795 AM378_06810 SM00903 Flavin reductase like domain AM378_06835 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_06890 SM00422 helix_turn_helix, mercury resistance AM378_06895 SM01192 AM378_06895 AM378_06895 SM01193 AM378_06895 AM378_06905 SM01131 AM378_06905 AM378_06910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM378_06910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM378_06910 SM00091 PAS domain AM378_06910 SM00267 diguanylate cyclase AM378_06915 SM00342 helix_turn_helix, arabinose operon control protein AM378_06930 SM00342 helix_turn_helix, arabinose operon control protein AM378_06935 SM00155 Phospholipase D. Active site motifs. AM378_06965 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_06970 SM00822 AM378_06970 AM378_06975 SM00822 AM378_06975 AM378_06980 SM00849 Metallo-beta-lactamase superfamily AM378_06985 SM00342 helix_turn_helix, arabinose operon control protein AM378_07005 SM00354 helix_turn _helix lactose operon repressor AM378_07075 SM00823 Phosphopantetheine attachment site AM378_07075 SM00824 Thioesterase AM378_07080 SM00923 MbtH-like protein AM378_07100 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM378_07160 SM00530 Helix-turn-helix XRE-family like proteins AM378_07180 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AM378_07225 SM00267 diguanylate cyclase AM378_07240 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_07240 SM00895 AM378_07240 AM378_07255 SM01130 AM378_07255 AM378_07270 SM00342 helix_turn_helix, arabinose operon control protein AM378_07285 SM00382 ATPases associated with a variety of cellular activities AM378_07345 SM00342 helix_turn_helix, arabinose operon control protein AM378_07405 SM00382 ATPases associated with a variety of cellular activities AM378_07410 SM00382 ATPases associated with a variety of cellular activities AM378_07430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM378_07470 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_07500 SM00563 Phosphate acyltransferases AM378_07525 SM00100 Cyclic nucleotide-monophosphate binding domain AM378_07525 SM00419 helix_turn_helix, cAMP Regulatory protein AM378_07540 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AM378_07540 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AM378_07575 SM00448 cheY-homologous receiver domain AM378_07575 SM00862 Transcriptional regulatory protein, C terminal AM378_07580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_07580 SM00387 Histidine kinase-like ATPases AM378_07580 SM00388 His Kinase A (phosphoacceptor) domain AM378_07600 SM00020 Trypsin-like serine protease AM378_07605 SM00382 ATPases associated with a variety of cellular activities AM378_07605 SM00487 DEAD-like helicases superfamily AM378_07605 SM00490 helicase superfamily c-terminal domain AM378_07605 SM00847 Helicase associated domain (HA2) Add an annotation AM378_07665 SM00890 Domain of unknown function AM378_07715 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM378_07725 SM00091 PAS domain AM378_07725 SM00382 ATPases associated with a variety of cellular activities AM378_07760 SM00382 ATPases associated with a variety of cellular activities AM378_07765 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM378_07795 SM00382 ATPases associated with a variety of cellular activities AM378_07800 SM00382 ATPases associated with a variety of cellular activities AM378_07825 SM00936 Penicillin-binding protein 5, C-terminal domain AM378_07845 SM00357 Cold shock protein domain AM378_07845 SM00955 AM378_07845 AM378_07905 SM00912 haemagglutination activity domain AM378_07930 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_07930 SM01134 AM378_07930 AM378_07945 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM378_07960 SM00028 Tetratricopeptide repeats AM378_07970 SM00822 AM378_07970 AM378_07985 SM00382 ATPases associated with a variety of cellular activities AM378_08005 SM00861 Transketolase, pyrimidine binding domain AM378_08015 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_08015 SM01134 AM378_08015 AM378_08020 SM00014 Acid phosphatase homologues AM378_08040 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM378_08040 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM378_08040 SM00493 AM378_08040 AM378_08055 SM00822 AM378_08055 AM378_08065 SM00363 S4 RNA-binding domain AM378_08085 SM00481 DNA polymerase alpha chain like domain AM378_08120 SM00749 bacterial OsmY and nodulation domain AM378_08185 SM00354 helix_turn _helix lactose operon repressor AM378_08200 SM00829 Enoylreductase AM378_08210 SM00382 ATPases associated with a variety of cellular activities AM378_08245 SM00155 Phospholipase D. Active site motifs. AM378_08255 SM00382 ATPases associated with a variety of cellular activities AM378_08260 SM00382 ATPases associated with a variety of cellular activities AM378_08300 SM00528 Domain in histone-like proteins of HNS family AM378_08310 SM00984 UDP binding domain AM378_08320 SM00448 cheY-homologous receiver domain AM378_08385 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AM378_08385 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AM378_08385 SM00493 AM378_08385 AM378_08390 SM00450 Rhodanese Homology Domain AM378_08410 SM00870 AM378_08410 AM378_08420 SM00636 AM378_08420 AM378_08440 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM378_08455 SM00763 PrkA AAA domain AM378_08510 SM01005 Alanine racemase, C-terminal domain AM378_08535 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_08585 SM00341 Helicase and RNase D C-terminal AM378_08585 SM00474 3'-5' exonuclease AM378_08605 SM00487 DEAD-like helicases superfamily AM378_08605 SM00491 AM378_08605 AM378_08645 SM00364 Leucine-rich repeats, bacterial type AM378_08645 SM00369 Leucine-rich repeats, typical (most populated) subfamily AM378_08655 SM00257 Lysin motif AM378_08665 SM00382 ATPases associated with a variety of cellular activities AM378_08675 SM00382 ATPases associated with a variety of cellular activities AM378_08680 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM378_08705 SM00834 Putative regulatory protein AM378_08760 SM00836 DALR anticodon binding domain AM378_08760 SM01016 Arginyl tRNA synthetase N terminal dom AM378_08815 SM01022 AM378_08815 AM378_08825 SM00487 DEAD-like helicases superfamily AM378_08825 SM00490 helicase superfamily c-terminal domain AM378_08830 SM00357 Cold shock protein domain AM378_08865 SM00052 Putative diguanylate phosphodiesterase AM378_08870 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_08870 SM01091 Transporter associated domain AM378_08910 SM00357 Cold shock protein domain AM378_08920 SM00849 Metallo-beta-lactamase superfamily AM378_08975 SM00342 helix_turn_helix, arabinose operon control protein AM378_08990 SM00257 Lysin motif AM378_08990 SM00749 bacterial OsmY and nodulation domain AM378_09045 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_09100 SM00849 Metallo-beta-lactamase superfamily AM378_09130 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM378_09190 SM00862 Transcriptional regulatory protein, C terminal AM378_09200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_09200 SM00387 Histidine kinase-like ATPases AM378_09205 SM00421 helix_turn_helix, Lux Regulon AM378_09205 SM00448 cheY-homologous receiver domain AM378_09225 SM00382 ATPases associated with a variety of cellular activities AM378_09230 SM00382 ATPases associated with a variety of cellular activities AM378_09475 SM00530 Helix-turn-helix XRE-family like proteins AM378_09515 SM00382 ATPases associated with a variety of cellular activities AM378_09525 SM00062 Bacterial periplasmic substrate-binding proteins AM378_09525 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM378_09570 SM00342 helix_turn_helix, arabinose operon control protein AM378_09620 SM00382 ATPases associated with a variety of cellular activities AM378_09690 SM00047 Lysozyme subfamily 2 AM378_09735 SM00858 AM378_09735 AM378_09780 SM00448 cheY-homologous receiver domain AM378_09785 SM00448 cheY-homologous receiver domain AM378_09790 SM00138 Methyltransferase, chemotaxis proteins AM378_09795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM378_09795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_09795 SM00319 Homologues of the ligand binding domain of Tar AM378_09800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM378_09800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_09800 SM00319 Homologues of the ligand binding domain of Tar AM378_09805 SM00260 Two component signalling adaptor domain AM378_09810 SM00073 Histidine Phosphotransfer domain AM378_09810 SM00260 Two component signalling adaptor domain AM378_09810 SM00387 Histidine kinase-like ATPases AM378_09810 SM01231 AM378_09810 AM378_09850 SM00829 Enoylreductase AM378_09985 SM00331 Sigma factor PP2C-like phosphatases AM378_09985 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AM378_10015 SM00382 ATPases associated with a variety of cellular activities AM378_10015 SM01086 C-terminal, D2-small domain, of ClpB protein AM378_10030 SM00871 Bacterial transcription activator, effector binding domain AM378_10055 SM00342 helix_turn_helix, arabinose operon control protein AM378_10060 SM00354 helix_turn _helix lactose operon repressor AM378_10090 SM00342 helix_turn_helix, arabinose operon control protein AM378_10115 SM00965 Secretin and TonB N terminus short domain AM378_10170 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AM378_10195 SM00831 Cation transporter/ATPase, N-terminus AM378_10230 SM00421 helix_turn_helix, Lux Regulon AM378_10245 SM00357 Cold shock protein domain AM378_10260 SM00829 Enoylreductase AM378_10305 SM00267 diguanylate cyclase AM378_10450 SM00823 Phosphopantetheine attachment site AM378_10460 SM00564 beta-propeller repeat AM378_10475 SM00421 helix_turn_helix, Lux Regulon AM378_10560 SM00346 helix_turn_helix isocitrate lyase regulation AM378_10565 SM00882 Coenzyme A transferase AM378_10570 SM00882 Coenzyme A transferase AM378_10580 SM00998 Adenylosuccinate lyase C-terminus AM378_10615 SM00564 beta-propeller repeat AM378_10635 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM378_10640 SM00342 helix_turn_helix, arabinose operon control protein AM378_10660 SM00382 ATPases associated with a variety of cellular activities AM378_10690 SM00062 Bacterial periplasmic substrate-binding proteins AM378_10725 SM00530 Helix-turn-helix XRE-family like proteins AM378_10840 SM00764 Citrate lyase ligase C-terminal domain AM378_10845 SM00448 cheY-homologous receiver domain AM378_10850 SM01038 Beta galactosidase small chain AM378_10865 SM00342 helix_turn_helix, arabinose operon control protein AM378_10880 SM00421 helix_turn_helix, Lux Regulon AM378_10890 SM00382 ATPases associated with a variety of cellular activities AM378_10915 SM00646 AM378_10915 AM378_10950 SM00235 Zinc-dependent metalloprotease AM378_11000 SM00382 ATPases associated with a variety of cellular activities AM378_11005 SM00382 ATPases associated with a variety of cellular activities AM378_11075 SM00822 AM378_11075 AM378_11165 SM00354 helix_turn _helix lactose operon repressor AM378_11170 SM01007 Class II Aldolase and Adducin N-terminal domain AM378_11190 SM00382 ATPases associated with a variety of cellular activities AM378_11200 SM00829 Enoylreductase AM378_11215 SM00062 Bacterial periplasmic substrate-binding proteins AM378_11230 SM00644 AM378_11230 AM378_11255 SM00479 AM378_11255 AM378_11270 SM01230 AM378_11270 AM378_11275 SM00530 Helix-turn-helix XRE-family like proteins AM378_11280 SM00382 ATPases associated with a variety of cellular activities AM378_11300 SM00382 ATPases associated with a variety of cellular activities AM378_11310 SM00267 diguanylate cyclase AM378_11335 SM00518 AP endonuclease family 2 AM378_11390 SM00841 Elongation factor P, C-terminal AM378_11390 SM01185 AM378_11390 AM378_11410 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM378_11415 SM00014 Acid phosphatase homologues AM378_11430 SM00052 Putative diguanylate phosphodiesterase AM378_11450 SM00382 ATPases associated with a variety of cellular activities AM378_11465 SM00363 S4 RNA-binding domain AM378_11470 SM00487 DEAD-like helicases superfamily AM378_11470 SM00490 helicase superfamily c-terminal domain AM378_11530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM378_11545 SM00387 Histidine kinase-like ATPases AM378_11545 SM00388 His Kinase A (phosphoacceptor) domain AM378_11550 SM00421 helix_turn_helix, Lux Regulon AM378_11550 SM00448 cheY-homologous receiver domain AM378_11605 SM00387 Histidine kinase-like ATPases AM378_11610 SM00421 helix_turn_helix, Lux Regulon AM378_11610 SM00448 cheY-homologous receiver domain AM378_11615 SM00387 Histidine kinase-like ATPases AM378_11615 SM00388 His Kinase A (phosphoacceptor) domain AM378_11615 SM00448 cheY-homologous receiver domain AM378_11620 SM00434 DNA Topoisomerase IV AM378_11660 SM00852 Probable molybdopterin binding domain AM378_11675 SM01060 AM378_11675 AM378_11685 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM378_11715 SM00822 AM378_11715 AM378_11720 SM00354 helix_turn _helix lactose operon repressor AM378_11775 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM378_11775 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AM378_11780 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AM378_11815 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM378_11860 SM00861 Transketolase, pyrimidine binding domain AM378_11885 SM00354 helix_turn _helix lactose operon repressor AM378_11905 SM00905 Dihydroneopterin aldolase AM378_11915 SM00382 ATPases associated with a variety of cellular activities AM378_11930 SM00062 Bacterial periplasmic substrate-binding proteins AM378_11975 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM378_11985 SM00342 helix_turn_helix, arabinose operon control protein AM378_11995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_11995 SM00387 Histidine kinase-like ATPases AM378_11995 SM00388 His Kinase A (phosphoacceptor) domain AM378_12000 SM00448 cheY-homologous receiver domain AM378_12000 SM00862 Transcriptional regulatory protein, C terminal AM378_12035 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_12065 SM00450 Rhodanese Homology Domain AM378_12070 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_12100 SM00825 Beta-ketoacyl synthase AM378_12140 SM00463 Small MutS-related domain AM378_12145 SM00855 Phosphoglycerate mutase family AM378_12215 SM00382 ATPases associated with a variety of cellular activities AM378_12235 SM00342 helix_turn_helix, arabinose operon control protein AM378_12250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM378_12250 SM00091 PAS domain AM378_12250 SM00421 helix_turn_helix, Lux Regulon AM378_12345 SM00387 Histidine kinase-like ATPases AM378_12350 SM00448 cheY-homologous receiver domain AM378_12350 SM00850 LytTr DNA-binding domain AM378_12500 SM00382 ATPases associated with a variety of cellular activities AM378_12570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AM378_12570 SM00292 breast cancer carboxy-terminal domain AM378_12570 SM00532 Ligase N family AM378_12575 SM00771 ZipA, C-terminal domain (FtsZ-binding) AM378_12605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_12605 SM00387 Histidine kinase-like ATPases AM378_12605 SM00388 His Kinase A (phosphoacceptor) domain AM378_12610 SM00448 cheY-homologous receiver domain AM378_12610 SM00862 Transcriptional regulatory protein, C terminal AM378_12620 SM00382 ATPases associated with a variety of cellular activities AM378_12665 SM00646 AM378_12665 AM378_12710 SM00919 Malic enzyme, NAD binding domain AM378_12710 SM01274 AM378_12710 AM378_12730 SM00495 Chitin-binding domain type 3 AM378_12730 SM00636 AM378_12730 AM378_12750 SM00861 Transketolase, pyrimidine binding domain AM378_12760 SM01276 AM378_12760 AM378_12765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_12765 SM00387 Histidine kinase-like ATPases AM378_12770 SM00421 helix_turn_helix, Lux Regulon AM378_12770 SM00448 cheY-homologous receiver domain AM378_12795 SM00421 helix_turn_helix, Lux Regulon AM378_12845 SM01130 AM378_12845 AM378_12890 SM00344 helix_turn_helix ASNC type AM378_12985 SM00912 haemagglutination activity domain AM378_13005 SM00382 ATPases associated with a variety of cellular activities AM378_13035 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_13035 SM00924 MgtE intracellular N domain AM378_13040 SM00052 Putative diguanylate phosphodiesterase AM378_13040 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AM378_13040 SM00091 PAS domain AM378_13040 SM00267 diguanylate cyclase AM378_13050 SM00342 helix_turn_helix, arabinose operon control protein AM378_13050 SM00478 endonuclease III AM378_13050 SM01009 AlkA N-terminal domain AM378_13095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_13095 SM00387 Histidine kinase-like ATPases AM378_13095 SM00388 His Kinase A (phosphoacceptor) domain AM378_13100 SM00448 cheY-homologous receiver domain AM378_13100 SM00862 Transcriptional regulatory protein, C terminal AM378_13125 SM00046 Diacylglycerol kinase catalytic domain (presumed) AM378_13130 SM01133 AM378_13130 AM378_13165 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_13165 SM01134 AM378_13165 AM378_13170 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_13220 SM00363 S4 RNA-binding domain AM378_13225 SM00869 Autotransporter beta-domain AM378_13235 SM00421 helix_turn_helix, Lux Regulon AM378_13235 SM00448 cheY-homologous receiver domain AM378_13240 SM00387 Histidine kinase-like ATPases AM378_13240 SM00388 His Kinase A (phosphoacceptor) domain AM378_13240 SM00448 cheY-homologous receiver domain AM378_13260 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_13260 SM01240 AM378_13260 AM378_13285 SM00354 helix_turn _helix lactose operon repressor AM378_13315 SM00564 beta-propeller repeat AM378_13335 SM00530 Helix-turn-helix XRE-family like proteins AM378_13340 SM00028 Tetratricopeptide repeats AM378_13350 SM00562 AM378_13350 AM378_13380 SM00271 DnaJ molecular chaperone homology domain AM378_13470 SM00382 ATPases associated with a variety of cellular activities AM378_13500 SM00938 Nitrogen regulatory protein P-II AM378_13510 SM00382 ATPases associated with a variety of cellular activities AM378_13510 SM00448 cheY-homologous receiver domain AM378_13520 SM00387 Histidine kinase-like ATPases AM378_13520 SM00388 His Kinase A (phosphoacceptor) domain AM378_13525 SM01211 AM378_13525 AM378_13530 SM00062 Bacterial periplasmic substrate-binding proteins AM378_13595 SM00358 Double-stranded RNA binding motif AM378_13595 SM00535 Ribonuclease III family AM378_13645 SM00487 DEAD-like helicases superfamily AM378_13645 SM00490 helicase superfamily c-terminal domain AM378_13650 SM00248 ankyrin repeats AM378_13665 SM00986 Uracil DNA glycosylase superfamily AM378_13665 SM00987 UreE urease accessory protein, C-terminal domain AM378_13755 SM00778 Zinc-binding domain of primase-helicase AM378_13755 SM00885 D5 N terminal like AM378_13895 SM00463 Small MutS-related domain AM378_13945 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_13990 SM00822 AM378_13990 AM378_13995 SM00849 Metallo-beta-lactamase superfamily AM378_14010 SM00091 PAS domain AM378_14010 SM00387 Histidine kinase-like ATPases AM378_14015 SM00448 cheY-homologous receiver domain AM378_14020 SM00382 ATPases associated with a variety of cellular activities AM378_14055 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_14075 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM378_14085 SM01144 AM378_14085 AM378_14090 SM00881 CoA binding domain AM378_14095 SM00155 Phospholipase D. Active site motifs. AM378_14140 SM00382 ATPases associated with a variety of cellular activities AM378_14140 SM00930 AM378_14140 AM378_14180 SM01322 AM378_14180 AM378_14200 SM00977 TilS substrate C-terminal domain AM378_14220 SM00862 Transcriptional regulatory protein, C terminal AM378_14245 SM00481 DNA polymerase alpha chain like domain AM378_14275 SM00935 Outer membrane protein (OmpH-like) AM378_14285 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM378_14330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM378_14360 SM01359 AM378_14360 AM378_14360 SM01360 AM378_14360 AM378_14390 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM378_14390 SM00475 5'-3' exonuclease AM378_14430 SM00925 MltA specific insert domain AM378_14450 SM00646 AM378_14450 AM378_14510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM378_14520 SM00927 DNA mismatch repair enzyme MutH AM378_14545 SM00563 Phosphate acyltransferases AM378_14560 SM00354 helix_turn _helix lactose operon repressor AM378_14570 SM00530 Helix-turn-helix XRE-family like proteins AM378_14590 SM00849 Metallo-beta-lactamase superfamily AM378_14605 SM00382 ATPases associated with a variety of cellular activities AM378_14635 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_14635 SM01134 AM378_14635 AM378_14650 SM00382 ATPases associated with a variety of cellular activities AM378_14660 SM00421 helix_turn_helix, Lux Regulon AM378_14665 SM00421 helix_turn_helix, Lux Regulon AM378_14705 SM00825 Beta-ketoacyl synthase AM378_14715 SM00382 ATPases associated with a variety of cellular activities AM378_14725 SM00382 ATPases associated with a variety of cellular activities AM378_14785 SM00382 ATPases associated with a variety of cellular activities AM378_14790 SM00342 helix_turn_helix, arabinose operon control protein AM378_14790 SM00871 Bacterial transcription activator, effector binding domain AM378_14795 SM00257 Lysin motif AM378_14875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_14875 SM00387 Histidine kinase-like ATPases AM378_14875 SM00388 His Kinase A (phosphoacceptor) domain AM378_14880 SM00448 cheY-homologous receiver domain AM378_14880 SM00862 Transcriptional regulatory protein, C terminal AM378_14950 SM00382 ATPases associated with a variety of cellular activities AM378_14960 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_14960 SM01134 AM378_14960 AM378_14985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_14985 SM00895 AM378_14985 AM378_15010 SM00829 Enoylreductase AM378_15040 SM01011 Aminopeptidase P, N-terminal domain AM378_15090 SM00346 helix_turn_helix isocitrate lyase regulation AM378_15095 SM00382 ATPases associated with a variety of cellular activities AM378_15135 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM378_15145 SM01007 Class II Aldolase and Adducin N-terminal domain AM378_15195 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AM378_15200 SM00382 ATPases associated with a variety of cellular activities AM378_15225 SM00861 Transketolase, pyrimidine binding domain AM378_15280 SM00346 helix_turn_helix isocitrate lyase regulation AM378_15285 SM00822 AM378_15285 AM378_15355 SM00382 ATPases associated with a variety of cellular activities AM378_15370 SM00487 DEAD-like helicases superfamily AM378_15370 SM00490 helicase superfamily c-terminal domain AM378_15370 SM00847 Helicase associated domain (HA2) Add an annotation AM378_15410 SM00387 Histidine kinase-like ATPases AM378_15410 SM00388 His Kinase A (phosphoacceptor) domain AM378_15415 SM00448 cheY-homologous receiver domain AM378_15415 SM00862 Transcriptional regulatory protein, C terminal AM378_15445 SM00382 ATPases associated with a variety of cellular activities AM378_15450 SM00947 Carbonic anhydrase AM378_15505 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_15505 SM00895 AM378_15505 AM378_15540 SM00342 helix_turn_helix, arabinose operon control protein AM378_15550 SM00731 SprT homologues. AM378_15575 SM00732 Likely ribonuclease with RNase H fold. AM378_15580 SM00382 ATPases associated with a variety of cellular activities AM378_15600 SM01152 AM378_15600 AM378_15610 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_15640 SM00478 endonuclease III AM378_15640 SM00525 AM378_15640 AM378_15665 SM00421 helix_turn_helix, Lux Regulon AM378_15715 SM00862 Transcriptional regulatory protein, C terminal AM378_15725 SM00862 Transcriptional regulatory protein, C terminal AM378_15750 SM00421 helix_turn_helix, Lux Regulon AM378_15760 SM00530 Helix-turn-helix XRE-family like proteins AM378_15825 SM00640 Glycosyl hydrolases family 32 AM378_15830 SM00354 helix_turn _helix lactose operon repressor AM378_15855 SM00342 helix_turn_helix, arabinose operon control protein AM378_15875 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_15880 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_15880 SM00866 AM378_15880 AM378_15915 SM00563 Phosphate acyltransferases AM378_15920 SM00434 DNA Topoisomerase IV AM378_15940 SM00387 Histidine kinase-like ATPases AM378_15940 SM00433 TopoisomeraseII AM378_15970 SM00091 PAS domain AM378_15980 SM01120 AM378_15980 AM378_16010 SM00098 Alkaline phosphatase homologues AM378_16035 SM01118 AM378_16035 AM378_16040 SM00287 Bacterial SH3 domain homologues AM378_16055 SM00905 Dihydroneopterin aldolase AM378_16060 SM01207 AM378_16060 AM378_16075 SM00400 zinc finger AM378_16075 SM00493 AM378_16075 AM378_16075 SM00766 DNA primase DnaG DnaB-binding AM378_16270 SM00479 AM378_16270 AM378_16350 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_16355 SM00382 ATPases associated with a variety of cellular activities AM378_16395 SM00858 AM378_16395 AM378_16410 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_16410 SM00895 AM378_16410 AM378_16495 SM00749 bacterial OsmY and nodulation domain AM378_16510 SM00073 Histidine Phosphotransfer domain AM378_16510 SM00091 PAS domain AM378_16510 SM00387 Histidine kinase-like ATPases AM378_16510 SM00388 His Kinase A (phosphoacceptor) domain AM378_16510 SM00448 cheY-homologous receiver domain AM378_16515 SM00014 Acid phosphatase homologues AM378_16520 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_16580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM378_16585 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM378_16620 SM00382 ATPases associated with a variety of cellular activities AM378_16630 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_16650 SM00382 ATPases associated with a variety of cellular activities AM378_16750 SM00342 helix_turn_helix, arabinose operon control protein AM378_16765 SM00530 Helix-turn-helix XRE-family like proteins AM378_16850 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_16875 SM00052 Putative diguanylate phosphodiesterase AM378_16875 SM00267 diguanylate cyclase AM378_16880 SM00829 Enoylreductase AM378_16905 SM00878 Biotin carboxylase C-terminal domain AM378_16955 SM00823 Phosphopantetheine attachment site AM378_16955 SM00824 Thioesterase AM378_17025 SM00829 Enoylreductase AM378_17030 SM01266 AM378_17030 AM378_17050 SM00344 helix_turn_helix ASNC type AM378_17055 SM00062 Bacterial periplasmic substrate-binding proteins AM378_17060 SM01005 Alanine racemase, C-terminal domain AM378_17065 SM00382 ATPases associated with a variety of cellular activities AM378_17070 SM00829 Enoylreductase AM378_17085 SM01266 AM378_17085 AM378_17115 SM00563 Phosphate acyltransferases AM378_17135 SM00354 helix_turn _helix lactose operon repressor AM378_17155 SM00382 ATPases associated with a variety of cellular activities AM378_17215 SM00912 haemagglutination activity domain AM378_17225 SM00382 ATPases associated with a variety of cellular activities AM378_17250 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_17250 SM00866 AM378_17250 AM378_17255 SM01018 B12 binding domain AM378_17260 SM00346 helix_turn_helix isocitrate lyase regulation AM378_17395 SM00422 helix_turn_helix, mercury resistance AM378_17410 SM00662 RNA polymerases D AM378_17415 SM00363 S4 RNA-binding domain AM378_17415 SM01390 AM378_17415 AM378_17480 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM378_17485 SM01374 AM378_17485 AM378_17505 SM00322 K homology RNA-binding domain AM378_17520 SM01382 AM378_17520 AM378_17520 SM01383 AM378_17520 AM378_17540 SM01403 AM378_17540 AM378_17560 SM00838 Elongation factor G C-terminus AM378_17560 SM00889 Elongation factor G, domain IV AM378_17615 SM00354 helix_turn _helix lactose operon repressor AM378_17640 SM00382 ATPases associated with a variety of cellular activities AM378_17655 SM00382 ATPases associated with a variety of cellular activities AM378_17660 SM00062 Bacterial periplasmic substrate-binding proteins AM378_17695 SM00100 Cyclic nucleotide-monophosphate binding domain AM378_17695 SM00419 helix_turn_helix, cAMP Regulatory protein AM378_17730 SM00448 cheY-homologous receiver domain AM378_17730 SM00850 LytTr DNA-binding domain AM378_17735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AM378_17760 SM00354 helix_turn _helix lactose operon repressor AM378_17875 SM00363 S4 RNA-binding domain AM378_17900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_17900 SM00387 Histidine kinase-like ATPases AM378_17900 SM00388 His Kinase A (phosphoacceptor) domain AM378_17905 SM00448 cheY-homologous receiver domain AM378_17905 SM00862 Transcriptional regulatory protein, C terminal AM378_17915 SM00271 DnaJ molecular chaperone homology domain AM378_17925 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_17925 SM00732 Likely ribonuclease with RNase H fold. AM378_17930 SM00899 AM378_17930 AM378_17975 SM00421 helix_turn_helix, Lux Regulon AM378_17980 SM01007 Class II Aldolase and Adducin N-terminal domain AM378_17990 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AM378_18015 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_18015 SM01134 AM378_18015 AM378_18020 SM00450 Rhodanese Homology Domain AM378_18030 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_18030 SM01134 AM378_18030 AM378_18055 SM00642 Alpha-amylase domain AM378_18060 SM00642 Alpha-amylase domain AM378_18065 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM378_18085 SM00354 helix_turn _helix lactose operon repressor AM378_18170 SM00382 ATPases associated with a variety of cellular activities AM378_18215 SM00421 helix_turn_helix, Lux Regulon AM378_18225 SM00829 Enoylreductase AM378_18240 SM00823 Phosphopantetheine attachment site AM378_18245 SM00822 AM378_18245 AM378_18245 SM00825 Beta-ketoacyl synthase AM378_18245 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AM378_18260 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_18305 SM00822 AM378_18305 AM378_18335 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AM378_18345 SM00382 ATPases associated with a variety of cellular activities AM378_18395 SM01022 AM378_18395 AM378_18415 SM00387 Histidine kinase-like ATPases AM378_18415 SM00388 His Kinase A (phosphoacceptor) domain AM378_18415 SM00448 cheY-homologous receiver domain AM378_18425 SM00869 Autotransporter beta-domain AM378_18430 SM00869 Autotransporter beta-domain AM378_18450 SM00052 Putative diguanylate phosphodiesterase AM378_18450 SM00091 PAS domain AM378_18450 SM00267 diguanylate cyclase AM378_18480 SM00052 Putative diguanylate phosphodiesterase AM378_18490 SM00421 helix_turn_helix, Lux Regulon AM378_18550 SM00382 ATPases associated with a variety of cellular activities AM378_18665 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM378_18705 SM00487 DEAD-like helicases superfamily AM378_18705 SM00490 helicase superfamily c-terminal domain AM378_18710 SM00354 helix_turn _helix lactose operon repressor AM378_18725 SM00382 ATPases associated with a variety of cellular activities AM378_18725 SM01086 C-terminal, D2-small domain, of ClpB protein AM378_18810 SM00448 cheY-homologous receiver domain AM378_18810 SM00862 Transcriptional regulatory protein, C terminal AM378_18815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_18815 SM00387 Histidine kinase-like ATPases AM378_18815 SM00388 His Kinase A (phosphoacceptor) domain AM378_18835 SM00971 Serine acetyltransferase, N-terminal AM378_18855 SM00450 Rhodanese Homology Domain AM378_18875 SM00829 Enoylreductase AM378_18960 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AM378_18960 SM01232 AM378_18960 AM378_19030 SM00072 Guanylate kinase homologues. AM378_19035 SM01409 AM378_19035 AM378_19040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM378_19040 SM00954 Region found in RelA / SpoT proteins AM378_19050 SM00487 DEAD-like helicases superfamily AM378_19050 SM00490 helicase superfamily c-terminal domain AM378_19095 SM01230 AM378_19095 AM378_19100 SM00091 PAS domain AM378_19100 SM00387 Histidine kinase-like ATPases AM378_19100 SM00388 His Kinase A (phosphoacceptor) domain AM378_19105 SM00382 ATPases associated with a variety of cellular activities AM378_19105 SM00448 cheY-homologous receiver domain AM378_19110 SM00729 Elongator protein 3, MiaB family, Radical SAM AM378_19135 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AM378_19135 SM00474 3'-5' exonuclease AM378_19135 SM00475 5'-3' exonuclease AM378_19135 SM00482 DNA polymerase A domain AM378_19140 SM00563 Phosphate acyltransferases AM378_19190 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_19190 SM00895 AM378_19190 AM378_19200 SM00354 helix_turn _helix lactose operon repressor AM378_19220 SM00382 ATPases associated with a variety of cellular activities AM378_19235 SM00382 ATPases associated with a variety of cellular activities AM378_19240 SM00327 von Willebrand factor (vWF) type A domain AM378_19250 SM00344 helix_turn_helix ASNC type AM378_19260 SM01228 AM378_19260 AM378_19305 SM00382 ATPases associated with a variety of cellular activities AM378_19340 SM00382 ATPases associated with a variety of cellular activities AM378_19350 SM00062 Bacterial periplasmic substrate-binding proteins AM378_19410 SM01234 AM378_19410 AM378_19425 SM00382 ATPases associated with a variety of cellular activities AM378_19425 SM00760 Bacterial dnaA protein helix-turn-helix domain AM378_19430 SM00480 DNA polymerase III beta subunit AM378_19440 SM00387 Histidine kinase-like ATPases AM378_19440 SM00433 TopoisomeraseII AM378_19505 SM00642 Alpha-amylase domain AM378_19530 SM00354 helix_turn _helix lactose operon repressor AM378_19550 SM00869 Autotransporter beta-domain AM378_19605 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_19625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM378_19625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_19625 SM01358 AM378_19625 AM378_19635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AM378_19710 SM00342 helix_turn_helix, arabinose operon control protein AM378_19820 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM378_19825 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_19840 SM00421 helix_turn_helix, Lux Regulon AM378_19840 SM00448 cheY-homologous receiver domain AM378_19845 SM00387 Histidine kinase-like ATPases AM378_19875 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AM378_19875 SM00636 AM378_19875 AM378_19895 SM00382 ATPases associated with a variety of cellular activities AM378_19900 SM00382 ATPases associated with a variety of cellular activities AM378_19945 SM00028 Tetratricopeptide repeats AM378_19950 SM00052 Putative diguanylate phosphodiesterase AM378_19950 SM00267 diguanylate cyclase AM378_19980 SM00487 DEAD-like helicases superfamily AM378_19980 SM00490 helicase superfamily c-terminal domain AM378_19990 SM00357 Cold shock protein domain AM378_19990 SM00382 ATPases associated with a variety of cellular activities AM378_19990 SM00959 Rho termination factor, N-terminal domain AM378_20010 SM00984 UDP binding domain AM378_20115 SM01219 AM378_20115 AM378_20180 SM00341 Helicase and RNase D C-terminal AM378_20180 SM00487 DEAD-like helicases superfamily AM378_20180 SM00490 helicase superfamily c-terminal domain AM378_20180 SM00956 AM378_20180 AM378_20270 SM00235 Zinc-dependent metalloprotease AM378_20300 SM00382 ATPases associated with a variety of cellular activities AM378_20300 SM00962 SRP54-type protein, GTPase domain AM378_20300 SM00963 SRP54-type protein, helical bundle domain AM378_20305 SM00382 ATPases associated with a variety of cellular activities AM378_20350 SM00382 ATPases associated with a variety of cellular activities AM378_20355 SM00382 ATPases associated with a variety of cellular activities AM378_20380 SM00382 ATPases associated with a variety of cellular activities AM378_20475 SM01004 Delta-aminolevulinic acid dehydratase AM378_20480 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AM378_20480 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM378_20605 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AM378_20605 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AM378_20610 SM00649 Ribosomal protein L11/L12 AM378_20635 SM00663 RNA polymerase I subunit A N-terminus AM378_20650 SM00387 Histidine kinase-like ATPases AM378_20665 SM00876 Biotin and Thiamin Synthesis associated domain AM378_20720 SM00411 bacterial (prokaryotic) histone like domain AM378_20730 SM01209 AM378_20730 AM378_20730 SM01210 AM378_20730 AM378_20735 SM00798 AICARFT/IMPCHase bienzyme AM378_20735 SM00851 MGS-like domain AM378_20805 SM00823 Phosphopantetheine attachment site AM378_20825 SM00923 MbtH-like protein AM378_20830 SM00824 Thioesterase AM378_20905 SM00883 Chaperonin 10 Kd subunit AM378_20925 SM00841 Elongation factor P, C-terminal AM378_20925 SM01185 AM378_20925 AM378_20990 SM00479 AM378_20990 AM378_21025 SM00257 Lysin motif AM378_21025 SM00646 AM378_21025 AM378_21030 SM00853 MutL C terminal dimerisation domain AM378_21030 SM01340 AM378_21030 AM378_21050 SM00244 prohibitin homologues AM378_21055 SM00244 prohibitin homologues AM378_21065 SM00788 Adenylosuccinate synthetase AM378_21075 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_21075 SM00357 Cold shock protein domain AM378_21075 SM00955 AM378_21075 AM378_21080 SM00967 RNA 2'-O ribose methyltransferase substrate binding AM378_21180 SM00116 Domain in cystathionine beta-synthase and other proteins. AM378_21180 SM01091 Transporter associated domain AM378_21210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AM378_21210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_21280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_21280 SM00387 Histidine kinase-like ATPases AM378_21280 SM00388 His Kinase A (phosphoacceptor) domain AM378_21285 SM00448 cheY-homologous receiver domain AM378_21285 SM00862 Transcriptional regulatory protein, C terminal AM378_21300 SM01103 AM378_21300 AM378_21310 SM00382 ATPases associated with a variety of cellular activities AM378_21345 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_21365 SM01387 AM378_21365 AM378_21375 SM00316 Ribosomal protein S1-like RNA-binding domain AM378_21375 SM00322 K homology RNA-binding domain AM378_21380 SM00028 Tetratricopeptide repeats AM378_21390 SM00487 DEAD-like helicases superfamily AM378_21390 SM00490 helicase superfamily c-terminal domain AM378_21475 SM00859 Semialdehyde dehydrogenase, NAD binding domain AM378_21490 SM00072 Guanylate kinase homologues. AM378_21500 SM00382 ATPases associated with a variety of cellular activities AM378_21505 SM00382 ATPases associated with a variety of cellular activities AM378_21530 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_21530 SM00866 AM378_21530 AM378_21545 SM00342 helix_turn_helix, arabinose operon control protein AM378_21580 SM00642 Alpha-amylase domain AM378_21590 SM00354 helix_turn _helix lactose operon repressor AM378_21595 SM00831 Cation transporter/ATPase, N-terminus AM378_21605 SM00823 Phosphopantetheine attachment site AM378_21680 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_21680 SM01134 AM378_21680 AM378_21685 SM00421 helix_turn_helix, Lux Regulon AM378_21710 SM01133 AM378_21710 AM378_21730 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_21730 SM01134 AM378_21730 AM378_21740 SM00487 DEAD-like helicases superfamily AM378_21740 SM00490 helicase superfamily c-terminal domain AM378_21760 SM00487 DEAD-like helicases superfamily AM378_21760 SM00490 helicase superfamily c-terminal domain AM378_21775 SM00507 HNH nucleases AM378_21825 SM00833 Cobalamin synthesis protein cobW C-terminal domain AM378_21850 SM00382 ATPases associated with a variety of cellular activities AM378_21860 SM00382 ATPases associated with a variety of cellular activities AM378_21880 SM01230 AM378_21880 AM378_21905 SM00530 Helix-turn-helix XRE-family like proteins AM378_21915 SM00882 Coenzyme A transferase AM378_21920 SM00882 Coenzyme A transferase AM378_21950 SM00342 helix_turn_helix, arabinose operon control protein AM378_21960 SM00342 helix_turn_helix, arabinose operon control protein AM378_21960 SM00871 Bacterial transcription activator, effector binding domain AM378_21980 SM00530 Helix-turn-helix XRE-family like proteins AM378_22005 SM00155 Phospholipase D. Active site motifs. AM378_22040 SM00421 helix_turn_helix, Lux Regulon AM378_22070 SM00421 helix_turn_helix, Lux Regulon AM378_22095 SM00822 AM378_22095 AM378_22105 SM00822 AM378_22105 AM378_22110 SM00347 helix_turn_helix multiple antibiotic resistance protein AM378_22160 SM00342 helix_turn_helix, arabinose operon control protein AM378_22170 SM00903 Flavin reductase like domain AM378_22180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AM378_22180 SM00895 AM378_22180 AM378_22195 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AM378_22240 SM00267 diguanylate cyclase AM378_22295 SM00749 bacterial OsmY and nodulation domain AM378_22325 SM01133 AM378_22325 AM378_22330 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AM378_22360 SM00382 ATPases associated with a variety of cellular activities AM378_22365 SM00530 Helix-turn-helix XRE-family like proteins AM378_22375 SM00829 Enoylreductase AM378_22385 SM00829 Enoylreductase AM378_22400 SM00382 ATPases associated with a variety of cellular activities AM378_22410 SM00267 diguanylate cyclase AM378_22435 SM00855 Phosphoglycerate mutase family AM378_22440 SM00342 helix_turn_helix, arabinose operon control protein AM378_22440 SM00871 Bacterial transcription activator, effector binding domain AM378_22450 SM00448 cheY-homologous receiver domain AM378_22450 SM00862 Transcriptional regulatory protein, C terminal AM378_22495 SM00852 Probable molybdopterin binding domain AM378_22515 SM00271 DnaJ molecular chaperone homology domain AM378_22540 SM00904 Riboflavin kinase AM378_22590 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AM378_22595 SM00851 MGS-like domain AM378_22595 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AM378_22645 SM00650 Ribosomal RNA adenine dimethylases AM378_22665 SM00271 DnaJ molecular chaperone homology domain AM378_22675 SM00487 DEAD-like helicases superfamily AM378_22675 SM00490 helicase superfamily c-terminal domain AM378_22680 SM00486 DNA polymerase type-B family AM378_22705 SM00382 ATPases associated with a variety of cellular activities AM378_22750 SM01329 AM378_22750 AM378_22755 SM00917 LeuA allosteric (dimerisation) domain AM378_22785 SM00354 helix_turn _helix lactose operon repressor AM378_22860 SM00842 Cell division protein FtsA AM378_22865 SM00864 Tubulin/FtsZ family, GTPase domain AM378_22865 SM00865 Tubulin/FtsZ family, C-terminal domain AM378_22885 SM00957 SecA DEAD-like domain AM378_22885 SM00958 SecA preprotein cross-linking domain AM378_22910 SM01240 AM378_22910 AM378_22935 SM00644 AM378_22935 AM378_22980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AM378_22985 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AM378_22990 SM00073 Histidine Phosphotransfer domain AM378_22990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AM378_22990 SM00387 Histidine kinase-like ATPases AM378_22990 SM00388 His Kinase A (phosphoacceptor) domain AM378_22990 SM00448 cheY-homologous receiver domain AM378_23000 SM00954 Region found in RelA / SpoT proteins AM378_23015 SM01192 AM378_23015 AM378_23015 SM01193 AM378_23015 AM378_23110 SM00382 ATPases associated with a variety of cellular activities AM378_23120 SM00062 Bacterial periplasmic substrate-binding proteins AM378_23120 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AM378_23155 SM00257 Lysin motif AM378_23165 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AM378_23165 SM00534 ATPase domain of DNA mismatch repair MUTS family AM378_23190 SM00822 AM378_23190 AM378_23215 SM00342 helix_turn_helix, arabinose operon control protein AM378_23235 SM00382 ATPases associated with a variety of cellular activities AM378_23245 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AM378_23295 SM01091 Transporter associated domain AM378_23305 SM00382 ATPases associated with a variety of cellular activities AM378_23305 SM00962 SRP54-type protein, GTPase domain AM378_23305 SM00963 SRP54-type protein, helical bundle domain AM378_23355 SM00830 Chorismate mutase type II AM378_23360 SM00830 Chorismate mutase type II AM378_23385 SM00363 S4 RNA-binding domain AM378_23395 SM00382 ATPases associated with a variety of cellular activities AM378_23395 SM01086 C-terminal, D2-small domain, of ClpB protein AM378_23440 SM00257 Lysin motif AM378_23445 SM00849 Metallo-beta-lactamase superfamily AM378_23460 SM00479 AM378_23460 AM378_23505 SM01007 Class II Aldolase and Adducin N-terminal domain AM378_23565 SM00900 AM378_23565 AM378_23640 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AM378_23685 SM00778 Zinc-binding domain of primase-helicase AM378_23685 SM00885 D5 N terminal like AM378_23695 SM00479 AM378_23695 AM378_23720 SM00862 Transcriptional regulatory protein, C terminal AM378_23775 SM00421 helix_turn_helix, Lux Regulon AM378_23860 SM00342 helix_turn_helix, arabinose operon control protein AM378_23875 SM00342 helix_turn_helix, arabinose operon control protein AM378_23925 SM00420 helix_turn_helix, Deoxyribose operon repressor AM378_23925 SM01134 AM378_23925 AM378_23980 SM00530 Helix-turn-helix XRE-family like proteins AM378_24035 SM00342 helix_turn_helix, arabinose operon control protein AM378_24060 SM00965 Secretin and TonB N terminus short domain AM378_24070 SM00382 ATPases associated with a variety of cellular activities AM378_24085 SM00346 helix_turn_helix isocitrate lyase regulation AM378_24130 SM01061 CAT RNA binding domain AM378_24145 SM00448 cheY-homologous receiver domain AM378_24145 SM00862 Transcriptional regulatory protein, C terminal AM378_24150 SM00091 PAS domain AM378_24150 SM00387 Histidine kinase-like ATPases AM378_24150 SM00388 His Kinase A (phosphoacceptor) domain AM378_24180 SM00642 Alpha-amylase domain AM378_24210 SM01323 AM378_24210 AM378_24265 SM00861 Transketolase, pyrimidine binding domain AM378_24280 SM00981 AM378_24280 AM378_24285 SM00912 haemagglutination activity domain AM378_24365 SM00382 ATPases associated with a variety of cellular activities AM378_24365 SM00994 ClpX C4-type zinc finger AM378_24365 SM01086 C-terminal, D2-small domain, of ClpB protein AM378_24370 SM00382 ATPases associated with a variety of cellular activities AM378_24370 SM00464 Found in ATP-dependent protease La (LON) AM378_24375 SM00411 bacterial (prokaryotic) histone like domain