locus-tag	class	description
CGP94_00003	COG2501	S4 domain
CGP94_00007	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CGP94_00012	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CGP94_00014	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CGP94_00016	COG0305	Participates in initiation and elongation during chromosome replication
CGP94_00022	COG4863	YycH protein
CGP94_00024	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CGP94_00025	COG0737	Belongs to the 5'-nucleotidase family
CGP94_00034	COG0730	response to heat
CGP94_00035	COG1937	Protein conserved in bacteria
CGP94_00036	COG2210	Belongs to the sulfur carrier protein TusA family
CGP94_00037	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CGP94_00043	COG0655	NAD(P)H dehydrogenase (quinone) activity
CGP94_00046	COG0823	Involved in the tonB-independent uptake of proteins
CGP94_00049	COG1473	amidohydrolase
CGP94_00051	COG1283	sodium-dependent phosphate transmembrane transporter activity
CGP94_00052	COG4716	Myosin-crossreactive antigen
CGP94_00053	COG0697	spore germination
CGP94_00056	COG1620	l-lactate permease
CGP94_00059	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_00060	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_00061	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CGP94_00063	COG2423	ornithine cyclodeaminase activity
CGP94_00064	COG4264	IucA IucC family
CGP94_00065	COG2814	Major facilitator Superfamily
CGP94_00066	COG4264	IucA IucC family
CGP94_00067	COG4264	IucA IucC family
CGP94_00069	COG0019	diaminopimelate decarboxylase activity
CGP94_00070	COG1475	DNA binding
CGP94_00074	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CGP94_00075	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CGP94_00076	COG0438	transferase activity, transferring glycosyl groups
CGP94_00082	COG0813	purine-nucleoside phosphorylase activity
CGP94_00083	COG2814	Major facilitator Superfamily
CGP94_00089	COG3639	organic phosphonate transmembrane transporter activity
CGP94_00093	COG0737	Belongs to the 5'-nucleotidase family
CGP94_00097	COG1012	belongs to the aldehyde dehydrogenase family
CGP94_00097	COG1454	alcohol dehydrogenase
CGP94_00102	COG1086	Polysaccharide biosynthesis protein
CGP94_00104	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CGP94_00110	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CGP94_00112	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CGP94_00113	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CGP94_00115	COG2832	Protein of unknown function (DUF454)
CGP94_00123	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CGP94_00124	COG1960	acyl-CoA dehydrogenase activity
CGP94_00133	COG1114	Component of the transport system for branched-chain amino acids
CGP94_00134	COG1335	isochorismatase
CGP94_00135	COG3961	Belongs to the TPP enzyme family
CGP94_00141	COG1737	Transcriptional regulator
CGP94_00149	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CGP94_00151	COG0405	Gamma-glutamyltransferase
CGP94_00154	COG3842	ATPase activity
CGP94_00156	COG1175	transmembrane transport
CGP94_00157	COG3833	ABC-type maltose transport systems, permease component
CGP94_00158	COG0673	inositol 2-dehydrogenase activity
CGP94_00159	COG0673	inositol 2-dehydrogenase activity
CGP94_00161	COG1755	Isoprenylcysteine carboxyl methyltransferase
CGP94_00171	COG0183	Belongs to the thiolase family
CGP94_00173	COG1960	acyl-CoA dehydrogenase activity
CGP94_00174	COG0318	PFAM AMP-dependent synthetase and ligase
CGP94_00177	COG0747	negative chemotaxis
CGP94_00178	COG3189	MarR family transcriptional regulator
CGP94_00182	COG2190	(PTS) system
CGP94_00182	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CGP94_00182	COG1263	PTS System
CGP94_00183	COG1957	nucleoside hydrolase
CGP94_00186	COG3414	Phosphotransferase system galactitol-specific IIB component
CGP94_00187	COG3775	system Galactitol-specific IIC component
CGP94_00188	COG1063	alcohol dehydrogenase
CGP94_00190	COG1063	alcohol dehydrogenase
CGP94_00191	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CGP94_00192	COG1063	alcohol dehydrogenase
CGP94_00193	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CGP94_00194	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CGP94_00196	COG1063	alcohol dehydrogenase
CGP94_00197	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CGP94_00205	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CGP94_00208	COG2723	6-phospho-beta-galactosidase activity
CGP94_00209	COG2226	methyltransferase
CGP94_00217	COG0739	heme binding
CGP94_00222	COG3942	CHAP domain
CGP94_00222	COG1388	LysM domain
CGP94_00224	COG0842	Transport permease protein
CGP94_00224	COG1511	domain protein
CGP94_00244	COG1114	Component of the transport system for branched-chain amino acids
CGP94_00245	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
CGP94_00246	COG0577	efflux transmembrane transporter activity
CGP94_00247	COG1136	(ABC) transporter
CGP94_00251	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CGP94_00252	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CGP94_00261	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CGP94_00266	COG3037	sugar-specific permease SgaT UlaA
CGP94_00268	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CGP94_00273	COG2271	Major facilitator Superfamily
CGP94_00274	COG0346	lactoylglutathione lyase activity
CGP94_00275	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CGP94_00276	COG0431	NADPH-dependent FMN reductase
CGP94_00278	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CGP94_00279	COG2822	iron ion transport
CGP94_00280	COG2837	iron assimilation
CGP94_00281	COG0672	)-iron permease
CGP94_00282	COG0805	protein transport
CGP94_00283	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CGP94_00285	COG1476	TRANSCRIPTIONal
CGP94_00287	COG1131	(ABC) transporter
CGP94_00293	COG0646	methionine synthase
CGP94_00293	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CGP94_00294	COG0626	cystathionine gamma-synthase activity
CGP94_00295	COG0626	cystathionine gamma-synthase activity
CGP94_00296	COG1475	DNA binding
CGP94_00297	COG0668	transmembrane transport
CGP94_00298	COG4481	Protein conserved in bacteria
CGP94_00299	COG0012	GTP binding
CGP94_00318	COG1823	symporter activity
CGP94_00323	COG2233	PERMEase
CGP94_00331	COG1683	Conserved Protein
CGP94_00332	COG3759	membrane
CGP94_00358	COG0523	cobalamin synthesis protein
CGP94_00359	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CGP94_00361	COG5609	conserved protein (DUF2294)
CGP94_00363	COG1647	Serine aminopeptidase, S33
CGP94_00364	COG0733	neurotransmitter:sodium symporter activity
CGP94_00365	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CGP94_00366	COG0626	cystathionine gamma-synthase activity
CGP94_00368	COG2011	ABC-type metal ion transport system permease component
CGP94_00369	COG1464	Belongs to the NlpA lipoprotein family
CGP94_00376	COG0583	DNA-binding transcription factor activity
CGP94_00377	COG0067	glutamate synthase
CGP94_00377	COG0070	glutamate synthase
CGP94_00377	COG0069	glutamate synthase activity
CGP94_00378	COG0493	'glutamate synthase
CGP94_00380	COG1263	PTS System
CGP94_00380	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CGP94_00381	COG0366	Alpha amylase catalytic
CGP94_00382	COG2188	Transcriptional regulator
CGP94_00384	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CGP94_00385	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CGP94_00387	COG1982	Orn Lys Arg decarboxylase major
CGP94_00389	COG3870	Protein conserved in bacteria
CGP94_00390	COG0470	DNA polymerase III
CGP94_00391	COG1774	PSP1 C-terminal conserved region
CGP94_00393	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CGP94_00395	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CGP94_00397	COG0084	hydrolase, TatD family'
CGP94_00398	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CGP94_00400	COG4466	Protein conserved in bacteria
CGP94_00402	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CGP94_00403	COG0251	oxidation-reduction process
CGP94_00410	COG2244	polysaccharide biosynthetic process
CGP94_00411	COG3956	TIGRFAM MazG family protein
CGP94_00412	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CGP94_00414	COG1098	S1 RNA binding domain
CGP94_00417	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CGP94_00422	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CGP94_00433	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CGP94_00436	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CGP94_00438	COG3880	PFAM UvrB UvrC protein
CGP94_00441	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CGP94_00442	COG4956	integral membrane protein (PIN domain superfamily)
CGP94_00446	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CGP94_00450	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CGP94_00451	COG0250	Participates in transcription elongation, termination and antitermination
CGP94_00456	COG2813	Specifically methylates the guanine in position
CGP94_00458	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CGP94_00464	COG1473	amidohydrolase
CGP94_00470	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CGP94_00471	COG1428	Deoxynucleoside kinase
CGP94_00472	COG1428	Deoxynucleoside kinase
CGP94_00474	COG0561	phosphatase activity
CGP94_00476	COG4932	domain protein
CGP94_00476	COG3266	domain, Protein
CGP94_00482	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CGP94_00503	COG0095	Lipoate-protein ligase
CGP94_00504	COG0083	homoserine kinase activity
CGP94_00508	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CGP94_00513	COG2801	Transposase and inactivated derivatives
CGP94_00516	COG0667	Aldo Keto reductase
CGP94_00517	COG0655	NAD(P)H dehydrogenase (quinone) activity
CGP94_00519	COG1078	dGTPase activity
CGP94_00525	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CGP94_00526	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_00536	COG4974	Belongs to the 'phage' integrase family
CGP94_00545	COG0803	Belongs to the bacterial solute-binding protein 9 family
CGP94_00546	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CGP94_00547	COG1121	(ABC) transporter
CGP94_00548	COG1321	iron dependent repressor
CGP94_00550	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
CGP94_00552	COG1682	transport, permease protein
CGP94_00553	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
CGP94_00555	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CGP94_00556	COG1686	Belongs to the peptidase S11 family
CGP94_00557	COG1132	(ABC) transporter
CGP94_00558	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CGP94_00559	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CGP94_00560	COG1120	ATPase activity
CGP94_00561	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_00562	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_00563	COG2376	Dihydroxyacetone kinase
CGP94_00565	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
CGP94_00568	COG3949	Membrane
CGP94_00575	COG1136	(ABC) transporter
CGP94_00576	COG0577	efflux transmembrane transporter activity
CGP94_00577	COG1392	Phosphate transport regulator
CGP94_00578	COG0306	phosphate transporter
CGP94_00579	COG3942	CHAP domain
CGP94_00579	COG1388	LysM domain
CGP94_00581	COG4977	sequence-specific DNA binding
CGP94_00581	COG1917	Cupin 2, conserved barrel domain protein
CGP94_00586	COG0583	DNA-binding transcription factor activity
CGP94_00588	COG2839	Protein conserved in bacteria
CGP94_00594	COG1611	Belongs to the LOG family
CGP94_00598	COG4988	ABC transporter
CGP94_00599	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CGP94_00600	COG1846	Transcriptional regulator
CGP94_00601	COG0523	cobalamin synthesis protein
CGP94_00602	COG4989	oxidoreductase activity
CGP94_00604	COG0471	metal ion transport
CGP94_00611	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CGP94_00612	COG1349	DNA-binding transcription factor activity
CGP94_00613	COG1105	Belongs to the carbohydrate kinase PfkB family
CGP94_00614	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CGP94_00614	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CGP94_00614	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CGP94_00615	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CGP94_00616	COG1253	flavin adenine dinucleotide binding
CGP94_00617	COG0656	L-ascorbic acid biosynthetic process
CGP94_00618	COG0463	Glycosyl transferase, family 2
CGP94_00625	COG0720	synthase
CGP94_00627	COG0512	Glutamine amidotransferase of anthranilate synthase
CGP94_00627	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CGP94_00628	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CGP94_00633	COG0488	(ABC) transporter
CGP94_00634	COG0514	ATP-dependent DNA helicase (RecQ)
CGP94_00635	COG0517	IMP dehydrogenase activity
CGP94_00635	COG1125	glycine betaine transport
CGP94_00636	COG1174	glycine betaine transport
CGP94_00640	COG3104	oligopeptide transport
CGP94_00644	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CGP94_00645	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CGP94_00646	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_00647	COG4605	iron ion homeostasis
CGP94_00648	COG4604	ABC transporter, ATP-binding protein
CGP94_00649	COG4607	ABC-type enterochelin transport system periplasmic component
CGP94_00660	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CGP94_00661	COG1739	Uncharacterized protein family UPF0029
CGP94_00663	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CGP94_00664	COG1040	competence protein
CGP94_00668	COG1388	LysM domain
CGP94_00668	COG3942	CHAP domain
CGP94_00679	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CGP94_00683	COG0281	malic enzyme
CGP94_00693	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CGP94_00694	COG1647	Serine aminopeptidase, S33
CGP94_00695	COG0557	exoribonuclease II activity
CGP94_00706	COG1278	Cold shock
CGP94_00714	COG0406	alpha-ribazole phosphatase activity
CGP94_00715	COG1279	arginine transmembrane transporter activity
CGP94_00720	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CGP94_00721	COG1393	Belongs to the ArsC family
CGP94_00724	COG3878	Protein conserved in bacteria
CGP94_00725	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CGP94_00728	COG2011	ABC-type metal ion transport system permease component
CGP94_00729	COG1464	Belongs to the NlpA lipoprotein family
CGP94_00732	COG0396	ATPase activity
CGP94_00733	COG0719	Fe-S assembly protein
CGP94_00735	COG0822	iron-sulfur transferase activity
CGP94_00742	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CGP94_00759	COG1484	DNA-dependent DNA replication
CGP94_00802	COG1388	LysM domain
CGP94_00802	COG0860	N-Acetylmuramoyl-L-alanine amidase
CGP94_00804	COG2801	Transposase and inactivated derivatives
CGP94_00807	COG1253	flavin adenine dinucleotide binding
CGP94_00809	COG1801	Protein of unknown function DUF72
CGP94_00810	COG0730	response to heat
CGP94_00813	COG4470	Protein conserved in bacteria
CGP94_00815	COG2445	Protein of unknown function DUF86
CGP94_00820	COG1696	Membrane protein involved in D-alanine export
CGP94_00822	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
CGP94_00823	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CGP94_00824	COG4837	Protein of unknown function (DUF1462)
CGP94_00825	COG1252	NADH dehydrogenase
CGP94_00827	COG0316	Belongs to the HesB IscA family
CGP94_00829	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CGP94_00830	COG2056	Na+-H+ antiporter family
CGP94_00831	COG2050	protein possibly involved in aromatic compounds catabolism
CGP94_00842	COG1098	S1 RNA binding domain
CGP94_00843	COG1902	pentaerythritol trinitrate reductase activity
CGP94_00846	COG0584	glycerophosphoryl diester phosphodiesterase
CGP94_00850	COG0398	Pfam SNARE associated Golgi protein
CGP94_00854	COG1074	ATP-dependent DNA helicase activity
CGP94_00858	COG0561	phosphatase activity
CGP94_00867	COG1881	PFAM PEBP family protein
CGP94_00873	COG0601	transmembrane transport
CGP94_00874	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CGP94_00875	COG0444	Belongs to the ABC transporter superfamily
CGP94_00876	COG4608	Belongs to the ABC transporter superfamily
CGP94_00877	COG4166	transmembrane transport
CGP94_00878	COG0747	negative chemotaxis
CGP94_00879	COG0444	Belongs to the ABC transporter superfamily
CGP94_00880	COG4608	Belongs to the ABC transporter superfamily
CGP94_00881	COG0601	transmembrane transport
CGP94_00882	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CGP94_00887	COG1164	Oligoendopeptidase f
CGP94_00889	COG2346	COG2346, Truncated hemoglobins
CGP94_00892	COG2357	RelA SpoT domain protein
CGP94_00894	COG0564	pseudouridine synthase activity
CGP94_00895	COG2239	Acts as a magnesium transporter
CGP94_00896	COG0569	domain protein
CGP94_00896	COG0475	glutathione-regulated potassium exporter activity
CGP94_00898	COG0628	permease
CGP94_00899	COG1115	amino acid carrier protein
CGP94_00907	COG0861	Integral membrane protein TerC family
CGP94_00909	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CGP94_00910	COG0737	Belongs to the 5'-nucleotidase family
CGP94_00913	COG4903	ComK protein
CGP94_00916	COG4873	Protein conserved in bacteria
CGP94_00926	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CGP94_00928	COG2314	TM2 domain
CGP94_00930	COG1575	Belongs to the MenA family. Type 1 subfamily
CGP94_00931	COG1169	isochorismate synthase
CGP94_00933	COG2267	carboxylic ester hydrolase activity
CGP94_00937	COG3591	Belongs to the peptidase S1B family
CGP94_00938	COG0436	Aminotransferase
CGP94_00939	COG3594	Acyltransferase
CGP94_00942	COG2153	protein acetylation
CGP94_00944	COG1316	TRANSCRIPTIONal
CGP94_00952	COG2801	Transposase and inactivated derivatives
CGP94_00954	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CGP94_00957	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CGP94_00965	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CGP94_00966	COG4172	Belongs to the ABC transporter superfamily
CGP94_00967	COG4721	ABC-type cobalt transport system, permease component
CGP94_00970	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CGP94_00975	COG2801	Transposase and inactivated derivatives
CGP94_00976	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CGP94_00977	COG1271	oxidase subunit
CGP94_00978	COG1294	oxidase, subunit
CGP94_00979	COG0569	domain protein
CGP94_00991	COG1176	ABC-type spermidine putrescine transport system, permease component I
CGP94_00992	COG1177	transmembrane transport
CGP94_00993	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CGP94_00998	COG0483	inositol monophosphate 1-phosphatase activity
CGP94_01001	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CGP94_01003	COG0772	Belongs to the SEDS family
CGP94_01004	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CGP94_01010	COG3679	Belongs to the UPF0342 family
CGP94_01014	COG0742	ribosomal rna small subunit methyltransferase
CGP94_01025	COG4509	Sortase family
CGP94_01027	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CGP94_01033	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CGP94_01033	COG1796	DNA polymerase
CGP94_01037	COG2009	succinate dehydrogenase
CGP94_01038	COG1053	succinate dehydrogenase
CGP94_01039	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CGP94_01057	COG1288	antiporter activity
CGP94_01064	COG1011	Hydrolase
CGP94_01069	COG4839	cell division protein FtsL
CGP94_01073	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CGP94_01074	COG0849	cell division
CGP94_01075	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CGP94_01077	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CGP94_01079	COG0762	integral membrane protein
CGP94_01080	COG2302	S4 RNA-binding domain
CGP94_01081	COG3599	regulation of cell shape
CGP94_01083	COG2514	catechol 2,3-dioxygenase activity
CGP94_01088	COG0564	pseudouridine synthase activity
CGP94_01090	COG2233	PERMEase
CGP94_01103	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CGP94_01104	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CGP94_01106	COG2314	TM2 domain
CGP94_01109	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CGP94_01109	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CGP94_01111	COG0631	protein serine/threonine phosphatase activity
CGP94_01114	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CGP94_01117	COG1302	Protein conserved in bacteria
CGP94_01126	COG1196	nuclear chromosome segregation
CGP94_01127	COG0552	protein localization to endoplasmic reticulum
CGP94_01129	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CGP94_01140	COG1388	LysM domain
CGP94_01140	COG1388	LysM domain
CGP94_01141	COG2348	transferase activity, transferring amino-acyl groups
CGP94_01142	COG0758	DNA mediated transformation
CGP94_01159	COG0195	Participates in both transcription termination and antitermination
CGP94_01160	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CGP94_01165	COG0196	riboflavin kinase activity
CGP94_01170	COG2188	Transcriptional regulator
CGP94_01171	COG0612	Peptidase, M16
CGP94_01172	COG0612	Peptidase, M16
CGP94_01173	COG0300	oxidoreductase activity
CGP94_01177	COG1546	Belongs to the CinA family
CGP94_01177	COG1058	Belongs to the CinA family
CGP94_01181	COG1692	metallophosphoesterase
CGP94_01182	COG0674	pyruvate-flavodoxin oxidoreductase activity
CGP94_01182	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CGP94_01183	COG1013	pyruvate-flavodoxin oxidoreductase activity
CGP94_01190	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CGP94_01191	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CGP94_01196	COG1923	regulation of RNA biosynthetic process
CGP94_01200	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CGP94_01201	COG0789	Transcriptional regulator
CGP94_01231	COG1595	DNA-templated transcription, initiation
CGP94_01263	COG1131	(ABC) transporter
CGP94_01267	COG2197	response regulator
CGP94_01269	COG1525	nuclease
CGP94_01272	COG0527	aspartate kinase activity
CGP94_01273	COG0460	homoserine dehydrogenase
CGP94_01274	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CGP94_01278	COG0833	amino acid
CGP94_01283	COG2340	Cysteine-rich secretory protein family
CGP94_01289	COG4846	Membrane protein involved in cytochrome C biogenesis
CGP94_01293	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CGP94_01295	COG0824	Thioesterase
CGP94_01298	COG0187	DNA topoisomerase II activity
CGP94_01299	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CGP94_01300	COG1115	amino acid carrier protein
CGP94_01302	COG0628	permease
CGP94_01304	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CGP94_01305	COG1316	TRANSCRIPTIONal
CGP94_01307	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CGP94_01309	COG1363	Peptidase, m42
CGP94_01310	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CGP94_01311	COG0512	Glutamine amidotransferase of anthranilate synthase
CGP94_01318	COG2348	transferase activity, transferring amino-acyl groups
CGP94_01319	COG0561	phosphatase activity
CGP94_01327	COG0704	Plays a role in the regulation of phosphate uptake
CGP94_01329	COG0581	inorganic phosphate transmembrane transporter activity
CGP94_01330	COG0573	inorganic phosphate transmembrane transporter activity
CGP94_01333	COG0488	(ABC) transporter
CGP94_01334	COG0527	aspartate kinase activity
CGP94_01335	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CGP94_01342	COG2808	Putative FMN-binding domain
CGP94_01350	COG4548	von Willebrand factor, type A
CGP94_01359	COG0671	phosphoesterase, PA-phosphatase related
CGP94_01360	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CGP94_01366	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CGP94_01373	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CGP94_01378	COG0531	amino acid
CGP94_01381	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CGP94_01382	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CGP94_01385	COG0116	Belongs to the methyltransferase superfamily
CGP94_01391	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CGP94_01391	COG4499	WXG100 protein secretion system (Wss), protein YukC
CGP94_01393	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CGP94_01394	COG3935	DnaD domain protein
CGP94_01399	COG0438	transferase activity, transferring glycosyl groups
CGP94_01400	COG1694	Mazg nucleotide pyrophosphohydrolase
CGP94_01401	COG2738	Putative neutral zinc metallopeptidase
CGP94_01402	COG4347	Protein of unknown function (DUF1405)
CGP94_01410	COG0142	geranyltranstransferase activity
CGP94_01419	COG0492	ferredoxin-NADP+ reductase activity
CGP94_01421	COG0514	ATP-dependent DNA helicase (RecQ)
CGP94_01423	COG1141	Ferredoxin
CGP94_01432	COG5002	protein histidine kinase activity
CGP94_01433	COG0745	RESPONSE REGULATOR receiver
CGP94_01434	COG1187	pseudouridine synthase activity
CGP94_01439	COG0735	belongs to the Fur family
CGP94_01440	COG0494	nUDIX hydrolase
CGP94_01441	COG0667	Aldo Keto reductase
CGP94_01443	COG4221	oxidoreductase activity
CGP94_01446	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CGP94_01448	COG0366	Alpha amylase catalytic
CGP94_01449	COG1609	Transcriptional regulator
CGP94_01452	COG2195	Cleaves the N-terminal amino acid of tripeptides
CGP94_01454	COG4129	membrane
CGP94_01457	COG0508	dehydrogenase complex catalyzes the overall conversion of
CGP94_01458	COG0022	dehydrogenase e1 component
CGP94_01459	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CGP94_01460	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CGP94_01461	COG0497	DNA recombination
CGP94_01467	COG1302	Protein conserved in bacteria
CGP94_01468	COG0439	Biotin carboxylase
CGP94_01469	COG0511	ligase activity, forming carbon-carbon bonds
CGP94_01471	COG0006	proline dipeptidase activity
CGP94_01474	COG0095	Lipoate-protein ligase
CGP94_01475	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CGP94_01483	COG4537	Required for transformation and DNA binding
CGP94_01484	COG1459	type II secretion system
CGP94_01485	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CGP94_01486	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CGP94_01487	COG0011	TIGRFAM Protein of
CGP94_01488	COG1940	carbohydrate kinase activity
CGP94_01490	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CGP94_01494	COG0735	belongs to the Fur family
CGP94_01495	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CGP94_01496	COG1121	(ABC) transporter
CGP94_01498	COG0513	Belongs to the DEAD box helicase family
CGP94_01500	COG2384	SAM-dependent methyltransferase
CGP94_01501	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CGP94_01504	COG0517	IMP dehydrogenase activity
CGP94_01508	COG0295	cytidine deaminase activity
CGP94_01511	COG1702	phosphate starvation-inducible protein PhoH
CGP94_01514	COG1030	water channel activity
CGP94_01516	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CGP94_01517	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CGP94_01523	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CGP94_01526	COG1466	dna polymerase III delta subunit
CGP94_01527	COG0658	competence protein
CGP94_01527	COG2333	competence protein COMEC
CGP94_01528	COG2131	deaminase
CGP94_01529	COG2183	response to ionizing radiation
CGP94_01530	COG2226	methyltransferase
CGP94_01531	COG0799	negative regulation of ribosome biogenesis
CGP94_01532	COG1713	HD superfamily hydrolase involved in NAD metabolism
CGP94_01534	COG1534	Rna-binding protein
CGP94_01536	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CGP94_01537	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CGP94_01543	COG1914	H( )-stimulated, divalent metal cation uptake system
CGP94_01545	COG0439	Biotin carboxylase
CGP94_01546	COG0511	ligase activity, forming carbon-carbon bonds
CGP94_01547	COG1984	allophanate hydrolase subunit 2
CGP94_01548	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CGP94_01558	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CGP94_01561	COG1104	cysteine desulfurase activity
CGP94_01562	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CGP94_01565	COG1959	2 iron, 2 sulfur cluster binding
CGP94_01566	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CGP94_01567	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CGP94_01574	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CGP94_01574	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CGP94_01575	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CGP94_01575	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CGP94_01576	COG1862	Preprotein translocase
CGP94_01584	COG2868	ribosomal protein
CGP94_01591	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CGP94_01592	COG0285	dihydrofolate synthase activity
CGP94_01594	COG2818	Glycosylase
CGP94_01599	COG0113	porphobilinogen synthase activity
CGP94_01602	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CGP94_01608	COG4112	unkown
CGP94_01612	COG0833	amino acid
CGP94_01614	COG1484	DNA-dependent DNA replication
CGP94_01619	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CGP94_01620	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CGP94_01620	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CGP94_01622	COG5002	protein histidine kinase activity
CGP94_01623	COG0745	RESPONSE REGULATOR receiver
CGP94_01625	COG0372	Belongs to the citrate synthase family
CGP94_01626	COG1113	amino acid transport
CGP94_01631	COG0281	malic enzyme
CGP94_01633	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CGP94_01634	COG4109	DRTGG domain
CGP94_01641	COG0827	DNA restriction-modification system
CGP94_01643	COG0730	response to heat
CGP94_01645	COG1104	cysteine desulfurase activity
CGP94_01647	COG1956	GAF domain-containing protein
CGP94_01649	COG0584	glycerophosphoryl diester phosphodiesterase
CGP94_01650	COG1764	response to oxidative stress
CGP94_01651	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
CGP94_01652	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CGP94_01654	COG1263	PTS System
CGP94_01654	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CGP94_01655	COG0204	Acyl-transferase
CGP94_01656	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CGP94_01663	COG0454	-acetyltransferase
CGP94_01666	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CGP94_01666	COG1605	Chorismate mutase
CGP94_01670	COG1674	ftsk spoiiie
CGP94_01671	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CGP94_01673	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CGP94_01674	COG1363	Peptidase, m42
CGP94_01676	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CGP94_01678	COG2801	Transposase and inactivated derivatives
CGP94_01681	COG0510	thiamine kinase activity
CGP94_01685	COG1187	pseudouridine synthase activity
CGP94_01686	COG2244	polysaccharide biosynthetic process
CGP94_01687	COG2081	HI0933 family
CGP94_01691	COG2814	Major facilitator Superfamily
CGP94_01692	COG1242	4 iron, 4 sulfur cluster binding
CGP94_01693	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CGP94_01694	COG1846	Transcriptional regulator
CGP94_01695	COG2267	carboxylic ester hydrolase activity
CGP94_01700	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CGP94_01700	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CGP94_01705	COG5632	N-Acetylmuramoyl-L-alanine amidase
CGP94_01705	COG3266	domain, Protein
CGP94_01705	COG4193	domain, Protein
CGP94_01711	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CGP94_01715	COG0656	L-ascorbic acid biosynthetic process
CGP94_01719	COG1506	peptidase
CGP94_01720	COG2816	NAD+ diphosphatase activity
CGP94_01735	COG0732	type I restriction modification DNA specificity domain
CGP94_01774	COG1131	(ABC) transporter
CGP94_01775	COG0537	adenosine 5'-monophosphoramidase activity
CGP94_01781	COG0420	3'-5' exonuclease activity
CGP94_01785	COG2197	response regulator
CGP94_01786	COG4585	Histidine kinase
CGP94_01786	COG2203	Gaf domain
CGP94_01787	COG0564	pseudouridine synthase activity
CGP94_01794	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CGP94_01795	COG1126	abc transporter atp-binding protein
CGP94_01796	COG0765	amino acid transport
CGP94_01829	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CGP94_01830	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CGP94_01832	COG4129	membrane
CGP94_01836	COG1988	membrane-bound metal-dependent
CGP94_01838	COG1134	teichoic acid transport
CGP94_01838	COG1388	LysM domain
CGP94_01842	COG2801	Transposase and inactivated derivatives
CGP94_01846	COG0535	radical SAM domain protein
CGP94_01847	COG1607	acyl-coa hydrolase
CGP94_01848	COG2309	aminopeptidase activity
CGP94_01852	COG1295	ribonuclease BN
CGP94_01873	COG2070	2-Nitropropane dioxygenase
CGP94_01875	COG4851	CamS sex pheromone cAM373 precursor
CGP94_01879	COG4496	protein, YerC YecD
CGP94_01886	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CGP94_01888	COG0077	Prephenate dehydratase
CGP94_01891	COG1335	isochorismatase
CGP94_01893	COG1012	belongs to the aldehyde dehydrogenase family
CGP94_01903	COG1131	(ABC) transporter
CGP94_01906	COG1725	Transcriptional regulator
CGP94_01912	COG1388	LysM domain
CGP94_01912	COG0860	N-Acetylmuramoyl-L-alanine amidase
CGP94_01914	COG5632	N-Acetylmuramoyl-L-alanine amidase
CGP94_01914	COG1388	LysM domain
CGP94_01921	COG0739	heme binding
CGP94_01931	COG4695	Portal protein
CGP94_01953	COG0305	Participates in initiation and elongation during chromosome replication
CGP94_01977	COG3568	Endonuclease Exonuclease Phosphatase
CGP94_01982	COG0156	8-amino-7-oxononanoate synthase activity
CGP94_01983	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CGP94_01996	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CGP94_01997	COG1621	beta-fructofuranosidase activity
CGP94_01998	COG1609	Transcriptional regulator
CGP94_01999	COG0004	ammonium transporteR
CGP94_02000	COG0425	Belongs to the sulfur carrier protein TusA family
CGP94_02001	COG2391	methyltransferase activity
CGP94_02003	COG0488	(ABC) transporter
CGP94_02004	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CGP94_02006	COG0456	acetyltransferase
CGP94_02007	COG1214	PFAM Peptidase M22, glycoprotease
CGP94_02008	COG0802	atpase or kinase
CGP94_02010	COG0028	Belongs to the TPP enzyme family
CGP94_02021	COG2183	response to ionizing radiation
CGP94_02022	COG1191	sigma factor activity
CGP94_02024	COG1366	Belongs to the anti-sigma-factor antagonist family
CGP94_02025	COG2208	phosphoserine phosphatase activity
CGP94_02028	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CGP94_02031	COG3428	Bacterial PH domain
CGP94_02036	COG2205	protein histidine kinase activity
CGP94_02037	COG0745	RESPONSE REGULATOR receiver
CGP94_02039	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CGP94_02041	COG0772	Belongs to the SEDS family
CGP94_02044	COG1937	Protein conserved in bacteria
CGP94_02046	COG1418	mRNA catabolic process
CGP94_02053	COG0629	single-stranded DNA binding
CGP94_02067	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CGP94_02072	COG0009	L-threonylcarbamoyladenylate synthase
CGP94_02073	COG2890	protein-(glutamine-N5) methyltransferase activity
CGP94_02077	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CGP94_02086	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CGP94_02095	COG0813	purine-nucleoside phosphorylase activity
CGP94_02096	COG0783	Belongs to the Dps family
CGP94_02100	COG1482	cell wall glycoprotein biosynthetic process
CGP94_02101	COG0702	epimerase
CGP94_02102	COG0640	Transcriptional regulator
CGP94_02106	COG0561	phosphatase activity
CGP94_02107	COG1119	ATPase activity
CGP94_02110	COG3711	transcriptional antiterminator
CGP94_02116	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CGP94_02124	COG0489	protein tyrosine kinase activity
CGP94_02125	COG2814	Major facilitator Superfamily
CGP94_02128	COG1272	protein, Hemolysin III
CGP94_02130	COG1988	membrane-bound metal-dependent
CGP94_02133	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_02134	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CGP94_02135	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
CGP94_02136	COG3457	Alanine racemase
CGP94_02137	COG4264	IucA IucC family
CGP94_02138	COG2814	Major facilitator Superfamily
CGP94_02143	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CGP94_02145	COG2130	NADP-dependent
CGP94_02158	COG0656	L-ascorbic acid biosynthetic process
CGP94_02159	COG0789	Transcriptional regulator
CGP94_02160	COG5492	domain, Protein
CGP94_02161	COG2378	regulation of single-species biofilm formation
CGP94_02162	COG0693	protein deglycase activity
CGP94_02164	COG3527	Alpha-acetolactate decarboxylase
CGP94_02165	COG0028	Belongs to the TPP enzyme family
CGP94_02174	COG2801	Transposase and inactivated derivatives
CGP94_02182	COG0201	protein transport
CGP94_02205	COG2252	PERMEase
CGP94_02212	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CGP94_02223	COG1763	Mo-molybdopterin cofactor biosynthetic process
CGP94_02227	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CGP94_02228	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CGP94_02229	COG4149	molybdate abc transporter
CGP94_02230	COG0725	ABC transporter, periplasmic molybdate-binding protein
CGP94_02233	COG1268	BioY protein
CGP94_02236	COG1960	acyl-CoA dehydrogenase activity
CGP94_02237	COG4413	Urea transporter
CGP94_02250	COG1757	Na H antiporter
CGP94_02266	COG1113	amino acid transport
CGP94_02270	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CGP94_02271	COG0385	Bile acid
CGP94_02273	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CGP94_02273	COG1263	PTS System
CGP94_02274	COG1737	Transcriptional regulator
CGP94_02278	COG1028	Short-chain dehydrogenase reductase Sdr
CGP94_02279	COG1473	amidohydrolase
CGP94_02282	COG0583	DNA-binding transcription factor activity
CGP94_02286	COG2258	MOSC domain
CGP94_02289	COG1668	transmembrane transport
CGP94_02290	COG4152	abc transporter atp-binding protein
CGP94_02291	COG3152	Membrane
CGP94_02293	COG0786	glutamate:sodium symporter activity
CGP94_02295	COG0598	Magnesium transport protein CorA
CGP94_02298	COG0657	acetylesterase activity
CGP94_02300	COG2814	Major facilitator Superfamily
CGP94_02301	COG1566	PFAM secretion protein HlyD family protein
CGP94_02315	COG1620	l-lactate permease
CGP94_02319	COG0604	alcohol dehydrogenase
CGP94_02323	COG1511	domain protein
CGP94_02326	COG1263	PTS System
CGP94_02326	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CGP94_02329	COG3871	stress protein (general stress protein 26)
CGP94_02337	COG0789	Transcriptional regulator
CGP94_02341	COG2181	nitrate reductase activity
CGP94_02343	COG1140	nitrate reductase beta subunit
CGP94_02344	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CGP94_02346	COG2146	nitrite reductase [NAD(P)H] activity
CGP94_02347	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CGP94_02349	COG0454	-acetyltransferase
CGP94_02350	COG2116	formate transmembrane transporter activity
CGP94_02353	COG0803	Belongs to the bacterial solute-binding protein 9 family
CGP94_02353	COG3443	Belongs to the bacterial solute-binding protein 9 family
CGP94_02359	COG1126	abc transporter atp-binding protein
CGP94_02360	COG0765	amino acid transport
CGP94_02361	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CGP94_02362	COG2814	Major facilitator Superfamily
CGP94_02365	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CGP94_02372	COG0156	8-amino-7-oxononanoate synthase activity
CGP94_02374	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CGP94_02375	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CGP94_02376	COG1132	(ABC) transporter
CGP94_02379	COG1929	Belongs to the glycerate kinase type-1 family
CGP94_02381	COG2814	Major facilitator Superfamily
CGP94_02385	COG1113	amino acid transport
CGP94_02387	COG0531	amino acid
CGP94_02390	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CGP94_02392	COG1174	glycine betaine transport
CGP94_02394	COG1174	glycine betaine transport
CGP94_02396	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
CGP94_02397	COG0531	amino acid
CGP94_02398	COG2272	Belongs to the type-B carboxylesterase lipase family
CGP94_02399	COG2814	Major facilitator Superfamily
CGP94_02400	COG0390	transport system, permease component
CGP94_02401	COG4619	ABC transporter
CGP94_02402	COG1363	Peptidase, m42
CGP94_02405	COG4808	Protein conserved in bacteria
CGP94_02406	COG0069	glutamate synthase activity
CGP94_02409	COG1124	(ABC) transporter
CGP94_02411	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CGP94_02412	COG0601	transmembrane transport
CGP94_02413	COG0747	negative chemotaxis
CGP94_02417	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CGP94_02418	COG1028	Short-chain dehydrogenase reductase Sdr
CGP94_02419	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CGP94_02420	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CGP94_02444	COG2946	Replication initiation factor
CGP94_02448	COG0433	COG0433 Predicted ATPase
CGP94_02449	COG1674	ftsk spoiiie
CGP94_02459	COG1070	Carbohydrate kinase
CGP94_02460	COG1802	Transcriptional regulator
CGP94_02461	COG0789	Transcriptional regulator
CGP94_02462	COG2357	RelA SpoT domain protein
CGP94_02463	COG4876	unkown
CGP94_02468	COG0586	Pfam SNARE associated Golgi protein
CGP94_02469	COG2814	Major facilitator Superfamily
CGP94_02470	COG1846	Transcriptional regulator
CGP94_02471	COG1131	(ABC) transporter
CGP94_02474	COG3949	Membrane
CGP94_02475	COG0400	carboxylic ester hydrolase activity
CGP94_02476	COG0346	lactoylglutathione lyase activity
CGP94_02477	COG1846	Transcriptional regulator
CGP94_02479	COG2514	catechol 2,3-dioxygenase activity
CGP94_02482	COG0561	phosphatase activity
CGP94_02483	COG1131	(ABC) transporter
CGP94_02485	COG3764	Sortase (surface protein transpeptidase)
CGP94_02488	COG1760	l-serine dehydratase
CGP94_02489	COG1760	l-serine dehydratase
CGP94_02492	COG0697	spore germination
CGP94_02493	COG0657	acetylesterase activity
CGP94_02497	COG0028	Belongs to the TPP enzyme family
CGP94_02498	COG1346	cytolysis
CGP94_02500	COG0583	DNA-binding transcription factor activity
CGP94_02502	COG3942	CHAP domain
CGP94_02504	COG3425	synthase
CGP94_02506	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CGP94_02511	COG2409	Drug exporters of the RND superfamily
CGP94_02516	COG2217	Heavy metal translocating P-type atpase
CGP94_02520	COG0436	Aminotransferase
CGP94_02550	COG0167	dihydroorotate dehydrogenase activity
CGP94_02561	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CGP94_02562	COG3527	Alpha-acetolactate decarboxylase
CGP94_02564	COG0531	amino acid
CGP94_02570	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CGP94_02575	COG1510	regulation of RNA biosynthetic process
CGP94_02576	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
CGP94_02579	COG2851	Citrate transporter
CGP94_02581	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CGP94_02582	COG0386	Belongs to the glutathione peroxidase family
CGP94_02585	COG1136	(ABC) transporter
CGP94_02586	COG2205	protein histidine kinase activity
CGP94_02587	COG0745	RESPONSE REGULATOR receiver
CGP94_02589	COG1785	Belongs to the alkaline phosphatase family
CGP94_02591	COG1846	Transcriptional regulator
CGP94_02593	COG4932	domain protein
CGP94_02593	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
CGP94_02593	COG4932	domain protein
CGP94_02593	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
CGP94_02598	COG2235	arginine
CGP94_02603	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CGP94_02603	COG3711	transcriptional antiterminator
CGP94_02604	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CGP94_02604	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CGP94_02604	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CGP94_02605	COG1482	cell wall glycoprotein biosynthetic process
CGP94_02607	COG1705	Flagellar rod assembly protein muramidase FlgJ
CGP94_02607	COG3942	CHAP domain
CGP94_02609	COG2801	Transposase and inactivated derivatives
CGP94_02610	COG1535	isochorismatase
CGP94_02610	COG3433	isochorismatase activity
CGP94_02613	COG0438	transferase activity, transferring glycosyl groups
CGP94_02616	COG1073	alpha beta
CGP94_02618	COG0201	protein transport
CGP94_02621	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CGP94_02626	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CGP94_02632	COG1309	transcriptional regulator
CGP94_02633	COG1215	transferase activity, transferring glycosyl groups
CGP94_02644	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CGP94_02655	COG0471	metal ion transport
CGP94_02656	COG2962	Rard protein
CGP94_02658	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CGP94_02661	COG1136	(ABC) transporter
CGP94_02662	COG0577	efflux transmembrane transporter activity
CGP94_02664	COG1278	Cold shock
CGP94_02669	COG1475	DNA binding