CSC52_0001 SM00470 ParB-like nuclease domain CSC52_0013 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_0014 SM00257 Lysin motif CSC52_0024 SM00342 helix_turn_helix, arabinose operon control protein CSC52_0030 SM00148 Phospholipase C, catalytic domain (part); domain X CSC52_0038 SM00450 Rhodanese Homology Domain CSC52_0038 SM00849 Metallo-beta-lactamase superfamily CSC52_0039 SM00450 Rhodanese Homology Domain CSC52_0052 SM00387 Histidine kinase-like ATPases CSC52_0052 SM00388 His Kinase A (phosphoacceptor) domain CSC52_0053 SM00448 cheY-homologous receiver domain CSC52_0053 SM00862 Transcriptional regulatory protein, C terminal CSC52_0063 SM00857 Resolvase, N terminal domain CSC52_0064 SM00857 Resolvase, N terminal domain CSC52_0074 SM00650 Ribosomal RNA adenine dimethylases CSC52_0079 SM00450 Rhodanese Homology Domain CSC52_0080 SM00849 Metallo-beta-lactamase superfamily CSC52_0081 SM00450 Rhodanese Homology Domain CSC52_0100 SM00849 Metallo-beta-lactamase superfamily CSC52_0103 SM00091 PAS domain CSC52_0103 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSC52_0103 SM00387 Histidine kinase-like ATPases CSC52_0103 SM00388 His Kinase A (phosphoacceptor) domain CSC52_0104 SM00448 cheY-homologous receiver domain CSC52_0104 SM00862 Transcriptional regulatory protein, C terminal CSC52_0107 SM00788 Adenylosuccinate synthetase CSC52_0110 SM00267 diguanylate cyclase CSC52_0118 SM00434 DNA Topoisomerase IV CSC52_0119 SM00387 Histidine kinase-like ATPases CSC52_0119 SM00433 TopoisomeraseII CSC52_0122 SM00480 DNA polymerase III beta subunit CSC52_0123 SM00382 ATPases associated with a variety of cellular activities CSC52_0123 SM00760 Bacterial dnaA protein helix-turn-helix domain CSC52_0127 SM01228 CSC52_0127 CSC52_0129 SM00470 ParB-like nuclease domain CSC52_0132 SM00530 Helix-turn-helix XRE-family like proteins CSC52_0133 SM00357 Cold shock protein domain CSC52_0136 SM00382 ATPases associated with a variety of cellular activities CSC52_0147 SM00450 Rhodanese Homology Domain CSC52_0149 SM00867 YceI-like domain CSC52_0152 SM00382 ATPases associated with a variety of cellular activities CSC52_0177 SM00903 Flavin reductase like domain CSC52_0181 SM00903 Flavin reductase like domain CSC52_0188 SM00957 SecA DEAD-like domain CSC52_0188 SM00958 SecA preprotein cross-linking domain CSC52_0193 SM00047 Lysozyme subfamily 2 CSC52_0210 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_0211 SM00098 Alkaline phosphatase homologues CSC52_0213 SM00448 cheY-homologous receiver domain CSC52_0213 SM00862 Transcriptional regulatory protein, C terminal CSC52_0214 SM00387 Histidine kinase-like ATPases CSC52_0215 SM00382 ATPases associated with a variety of cellular activities CSC52_0245 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CSC52_0284 SM01266 CSC52_0284 CSC52_0289 SM00899 CSC52_0289 CSC52_0292 SM00382 ATPases associated with a variety of cellular activities CSC52_0292 SM01086 C-terminal, D2-small domain, of ClpB protein CSC52_0313 SM00382 ATPases associated with a variety of cellular activities CSC52_0319 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_0325 SM00382 ATPases associated with a variety of cellular activities CSC52_0330 SM00954 Region found in RelA / SpoT proteins CSC52_0331 SM00422 helix_turn_helix, mercury resistance CSC52_0332 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_0332 SM00895 CSC52_0332 CSC52_0341 SM01208 CSC52_0341 CSC52_0347 SM00487 DEAD-like helicases superfamily CSC52_0347 SM00490 helicase superfamily c-terminal domain CSC52_0373 SM00382 ATPases associated with a variety of cellular activities CSC52_0374 SM00382 ATPases associated with a variety of cellular activities CSC52_0382 SM00382 ATPases associated with a variety of cellular activities CSC52_0389 SM00116 Domain in cystathionine beta-synthase and other proteins. CSC52_0389 SM00382 ATPases associated with a variety of cellular activities CSC52_0402 SM00871 Bacterial transcription activator, effector binding domain CSC52_0407 SM00382 ATPases associated with a variety of cellular activities CSC52_0408 SM00382 ATPases associated with a variety of cellular activities CSC52_0411 SM00729 Elongator protein 3, MiaB family, Radical SAM CSC52_0411 SM00876 Biotin and Thiamin Synthesis associated domain CSC52_0420 SM00855 Phosphoglycerate mutase family CSC52_0422 SM00062 Bacterial periplasmic substrate-binding proteins CSC52_0422 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CSC52_0424 SM00382 ATPases associated with a variety of cellular activities CSC52_0439 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CSC52_0444 SM00387 Histidine kinase-like ATPases CSC52_0445 SM00421 helix_turn_helix, Lux Regulon CSC52_0445 SM00448 cheY-homologous receiver domain CSC52_0446 SM00422 helix_turn_helix, mercury resistance CSC52_0450 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_0455 SM00342 helix_turn_helix, arabinose operon control protein CSC52_0465 SM00829 Enoylreductase CSC52_0473 SM00850 LytTr DNA-binding domain CSC52_0474 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSC52_0474 SM00387 Histidine kinase-like ATPases CSC52_0474 SM00388 His Kinase A (phosphoacceptor) domain CSC52_0475 SM00448 cheY-homologous receiver domain CSC52_0475 SM00862 Transcriptional regulatory protein, C terminal CSC52_0477 SM00382 ATPases associated with a variety of cellular activities CSC52_0479 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_0494 SM00382 ATPases associated with a variety of cellular activities CSC52_0527 SM00420 helix_turn_helix, Deoxyribose operon repressor CSC52_0530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CSC52_0530 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CSC52_0533 SM00047 Lysozyme subfamily 2 CSC52_0541 SM00342 helix_turn_helix, arabinose operon control protein CSC52_0548 SM00988 UreE urease accessory protein, N-terminal domain CSC52_0561 SM00382 ATPases associated with a variety of cellular activities CSC52_0563 SM00852 Probable molybdopterin binding domain CSC52_0565 SM00852 Probable molybdopterin binding domain CSC52_0573 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_0583 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CSC52_0583 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CSC52_0583 SM00493 CSC52_0583 CSC52_0586 SM01403 CSC52_0586 CSC52_0590 SM01382 CSC52_0590 CSC52_0590 SM01383 CSC52_0590 CSC52_0593 SM00322 K homology RNA-binding domain CSC52_0597 SM01374 CSC52_0597 CSC52_0598 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CSC52_0609 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_0613 SM00662 RNA polymerases D CSC52_0615 SM00382 ATPases associated with a variety of cellular activities CSC52_0616 SM00382 ATPases associated with a variety of cellular activities CSC52_0635 SM00422 helix_turn_helix, mercury resistance CSC52_0639 SM00420 helix_turn_helix, Deoxyribose operon repressor CSC52_0639 SM01134 CSC52_0639 CSC52_0643 SM01133 CSC52_0643 CSC52_0654 SM00530 Helix-turn-helix XRE-family like proteins CSC52_0666 SM00482 DNA polymerase A domain CSC52_0685 SM00990 CSC52_0685 CSC52_0721 SM00287 Bacterial SH3 domain homologues CSC52_0721 SM00646 CSC52_0721 CSC52_0724 SM00829 Enoylreductase CSC52_0725 SM00829 Enoylreductase CSC52_0766 SM00382 ATPases associated with a variety of cellular activities CSC52_0772 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSC52_0780 SM01133 CSC52_0780 CSC52_0781 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CSC52_0796 SM00357 Cold shock protein domain CSC52_0796 SM00382 ATPases associated with a variety of cellular activities CSC52_0796 SM00959 Rho termination factor, N-terminal domain CSC52_0799 SM00937 CSC52_0799 CSC52_0802 SM00226 Low molecular weight phosphatase family CSC52_0814 SM00382 ATPases associated with a variety of cellular activities CSC52_0828 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSC52_0829 SM00155 Phospholipase D. Active site motifs. CSC52_0837 SM00487 DEAD-like helicases superfamily CSC52_0837 SM00490 helicase superfamily c-terminal domain CSC52_0840 SM00448 cheY-homologous receiver domain CSC52_0840 SM00862 Transcriptional regulatory protein, C terminal CSC52_0841 SM00387 Histidine kinase-like ATPases CSC52_0841 SM00388 His Kinase A (phosphoacceptor) domain CSC52_0849 SM01005 Alanine racemase, C-terminal domain CSC52_0852 SM00331 Sigma factor PP2C-like phosphatases CSC52_0852 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CSC52_0856 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_0856 SM00732 Likely ribonuclease with RNase H fold. CSC52_0857 SM00731 SprT homologues. CSC52_0866 SM01329 CSC52_0866 CSC52_0867 SM00917 LeuA allosteric (dimerisation) domain CSC52_0876 SM00534 ATPase domain of DNA mismatch repair MUTS family CSC52_0878 SM00382 ATPases associated with a variety of cellular activities CSC52_0879 SM00881 CoA binding domain CSC52_0883 SM00354 helix_turn _helix lactose operon repressor CSC52_0884 SM00640 Glycosyl hydrolases family 32 CSC52_0886 SM00448 cheY-homologous receiver domain CSC52_0886 SM00850 LytTr DNA-binding domain CSC52_0888 SM00794 Staphylococcal AgrD protein CSC52_0889 SM00793 Accessory gene regulator B CSC52_0895 SM00883 Chaperonin 10 Kd subunit CSC52_0907 SM00910 CSC52_0907 CSC52_0908 SM00530 Helix-turn-helix XRE-family like proteins CSC52_0937 SM00507 HNH nucleases CSC52_0962 SM00287 Bacterial SH3 domain homologues CSC52_0971 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_0972 SM00382 ATPases associated with a variety of cellular activities CSC52_0974 SM00382 ATPases associated with a variety of cellular activities CSC52_0986 SM01131 CSC52_0986 CSC52_0988 SM00710 Parallel beta-helix repeats CSC52_0998 SM00998 Adenylosuccinate lyase C-terminus CSC52_1002 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSC52_1002 SM00292 breast cancer carboxy-terminal domain CSC52_1002 SM00532 Ligase N family CSC52_1008 SM00845 GatB domain CSC52_1010 SM00046 Diacylglycerol kinase catalytic domain (presumed) CSC52_1014 SM00479 CSC52_1014 CSC52_1023 SM00387 Histidine kinase-like ATPases CSC52_1024 SM00421 helix_turn_helix, Lux Regulon CSC52_1024 SM00448 cheY-homologous receiver domain CSC52_1027 SM00226 Low molecular weight phosphatase family CSC52_1040 SM00478 endonuclease III CSC52_1042 SM00382 ATPases associated with a variety of cellular activities CSC52_1083 SM00062 Bacterial periplasmic substrate-binding proteins CSC52_1084 SM00382 ATPases associated with a variety of cellular activities CSC52_1093 SM00421 helix_turn_helix, Lux Regulon CSC52_1093 SM00448 cheY-homologous receiver domain CSC52_1094 SM00530 Helix-turn-helix XRE-family like proteins CSC52_1099 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSC52_1104 SM00382 ATPases associated with a variety of cellular activities CSC52_1153 SM00894 Excalibur calcium-binding domain CSC52_1157 SM01234 CSC52_1157 CSC52_1176 SM00047 Lysozyme subfamily 2 CSC52_1188 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_1190 SM00729 Elongator protein 3, MiaB family, Radical SAM CSC52_1193 SM00450 Rhodanese Homology Domain CSC52_1197 SM00363 S4 RNA-binding domain CSC52_1203 SM00849 Metallo-beta-lactamase superfamily CSC52_1209 SM00843 CSC52_1209 CSC52_1213 SM00830 Chorismate mutase type II CSC52_1214 SM00354 helix_turn _helix lactose operon repressor CSC52_1219 SM00725 NEAr Transporter domain CSC52_1221 SM00363 S4 RNA-binding domain CSC52_1222 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSC52_1223 SM00563 Phosphate acyltransferases CSC52_1230 SM00363 S4 RNA-binding domain CSC52_1230 SM01390 CSC52_1230 CSC52_1231 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CSC52_1235 SM00981 CSC52_1235 CSC52_1241 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CSC52_1241 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CSC52_1243 SM00849 Metallo-beta-lactamase superfamily CSC52_1245 SM00116 Domain in cystathionine beta-synthase and other proteins. CSC52_1247 SM00481 DNA polymerase alpha chain like domain CSC52_1248 SM00919 Malic enzyme, NAD binding domain CSC52_1248 SM01274 CSC52_1248 CSC52_1255 SM01329 CSC52_1255 CSC52_1256 SM00448 cheY-homologous receiver domain CSC52_1256 SM00862 Transcriptional regulatory protein, C terminal CSC52_1257 SM00387 Histidine kinase-like ATPases CSC52_1257 SM00388 His Kinase A (phosphoacceptor) domain CSC52_1260 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CSC52_1260 SM00474 3'-5' exonuclease CSC52_1260 SM00475 5'-3' exonuclease CSC52_1260 SM00482 DNA polymerase A domain CSC52_1261 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CSC52_1261 SM01232 CSC52_1261 CSC52_1263 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CSC52_1267 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSC52_1275 SM00382 ATPases associated with a variety of cellular activities CSC52_1275 SM00994 ClpX C4-type zinc finger CSC52_1275 SM01086 C-terminal, D2-small domain, of ClpB protein CSC52_1281 SM01004 Delta-aminolevulinic acid dehydratase CSC52_1297 SM00650 Ribosomal RNA adenine dimethylases CSC52_1309 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSC52_1310 SM00382 ATPases associated with a variety of cellular activities CSC52_1313 SM01323 CSC52_1313 CSC52_1317 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSC52_1317 SM00954 Region found in RelA / SpoT proteins CSC52_1319 SM00287 Bacterial SH3 domain homologues CSC52_1319 SM00646 CSC52_1319 CSC52_1323 SM00382 ATPases associated with a variety of cellular activities CSC52_1329 SM00028 Tetratricopeptide repeats CSC52_1330 SM00382 ATPases associated with a variety of cellular activities CSC52_1331 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CSC52_1333 SM00732 Likely ribonuclease with RNase H fold. CSC52_1340 SM00796 Allophanate hydrolase subunit 1 CSC52_1341 SM00797 Allophanate hydrolase subunit 2 CSC52_1343 SM00878 Biotin carboxylase C-terminal domain CSC52_1357 SM01103 CSC52_1357 CSC52_1359 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSC52_1362 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSC52_1364 SM00849 Metallo-beta-lactamase superfamily CSC52_1367 SM00838 Elongation factor G C-terminus CSC52_1368 SM00729 Elongator protein 3, MiaB family, Radical SAM CSC52_1372 SM00271 DnaJ molecular chaperone homology domain CSC52_1375 SM00729 Elongator protein 3, MiaB family, Radical SAM CSC52_1387 SM00116 Domain in cystathionine beta-synthase and other proteins. CSC52_1389 SM00400 zinc finger CSC52_1389 SM00493 CSC52_1389 CSC52_1393 SM00487 DEAD-like helicases superfamily CSC52_1393 SM00490 helicase superfamily c-terminal domain CSC52_1394 SM00518 AP endonuclease family 2 CSC52_1395 SM00382 ATPases associated with a variety of cellular activities CSC52_1406 SM00849 Metallo-beta-lactamase superfamily CSC52_1417 SM00450 Rhodanese Homology Domain CSC52_1422 SM00841 Elongation factor P, C-terminal CSC52_1422 SM01185 CSC52_1422 CSC52_1424 SM00878 Biotin carboxylase C-terminal domain CSC52_1434 SM00861 Transketolase, pyrimidine binding domain CSC52_1440 SM01350 CSC52_1440 CSC52_1443 SM00354 helix_turn _helix lactose operon repressor CSC52_1444 SM00642 Alpha-amylase domain CSC52_1445 SM00342 helix_turn_helix, arabinose operon control protein CSC52_1445 SM00871 Bacterial transcription activator, effector binding domain CSC52_1459 SM00363 S4 RNA-binding domain CSC52_1460 SM00448 cheY-homologous receiver domain CSC52_1460 SM00862 Transcriptional regulatory protein, C terminal CSC52_1461 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CSC52_1461 SM00387 Histidine kinase-like ATPases CSC52_1461 SM00388 His Kinase A (phosphoacceptor) domain CSC52_1470 SM00479 CSC52_1470 CSC52_1471 SM00530 Helix-turn-helix XRE-family like proteins CSC52_1506 SM00990 CSC52_1506 CSC52_1507 SM00487 DEAD-like helicases superfamily CSC52_1509 SM00507 HNH nucleases CSC52_1520 SM00635 Bacterial Ig-like domain 2 CSC52_1543 SM00287 Bacterial SH3 domain homologues CSC52_1553 SM00487 DEAD-like helicases superfamily CSC52_1553 SM00490 helicase superfamily c-terminal domain CSC52_1554 SM00257 Lysin motif CSC52_1556 SM00870 CSC52_1556 CSC52_1558 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_1561 SM00411 bacterial (prokaryotic) histone like domain CSC52_1565 SM00562 CSC52_1565 CSC52_1570 SM00028 Tetratricopeptide repeats CSC52_1571 SM00914 CSC52_1571 CSC52_1578 SM00479 CSC52_1578 CSC52_1578 SM00491 CSC52_1578 CSC52_1581 SM00478 endonuclease III CSC52_1581 SM00525 CSC52_1581 CSC52_1589 SM00981 CSC52_1589 CSC52_1593 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CSC52_1593 SM00475 5'-3' exonuclease CSC52_1594 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CSC52_1594 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CSC52_1599 SM00844 GA module CSC52_1600 SM00844 GA module CSC52_1605 SM00932 Scaffold protein Nfu/NifU N terminal CSC52_1606 SM00567 E-Z type HEAT repeats CSC52_1606 SM00932 Scaffold protein Nfu/NifU N terminal CSC52_1615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSC52_1615 SM00245 tail specific protease CSC52_1618 SM00014 Acid phosphatase homologues CSC52_1619 SM00448 cheY-homologous receiver domain CSC52_1619 SM00862 Transcriptional regulatory protein, C terminal CSC52_1620 SM00387 Histidine kinase-like ATPases CSC52_1620 SM00388 His Kinase A (phosphoacceptor) domain CSC52_1621 SM00861 Transketolase, pyrimidine binding domain CSC52_1626 SM00327 von Willebrand factor (vWF) type A domain CSC52_1632 SM00357 Cold shock protein domain CSC52_1635 SM01005 Alanine racemase, C-terminal domain CSC52_1639 SM01130 CSC52_1639 CSC52_1640 SM00859 Semialdehyde dehydrogenase, NAD binding domain CSC52_1642 SM00382 ATPases associated with a variety of cellular activities CSC52_1648 SM00382 ATPases associated with a variety of cellular activities CSC52_1655 SM00382 ATPases associated with a variety of cellular activities CSC52_1676 SM01061 CAT RNA binding domain CSC52_1678 SM00434 DNA Topoisomerase IV CSC52_1679 SM00387 Histidine kinase-like ATPases CSC52_1679 SM00433 TopoisomeraseII CSC52_1680 SM01207 CSC52_1680 CSC52_1691 SM00861 Transketolase, pyrimidine binding domain CSC52_1697 SM01240 CSC52_1697 CSC52_1700 SM01060 CSC52_1700 CSC52_1710 SM00318 Staphylococcal nuclease homologues CSC52_1712 SM00421 helix_turn_helix, Lux Regulon CSC52_1712 SM00448 cheY-homologous receiver domain CSC52_1715 SM00382 ATPases associated with a variety of cellular activities CSC52_1716 SM00155 Phospholipase D. Active site motifs. CSC52_1726 SM01230 CSC52_1726 CSC52_1727 SM00422 helix_turn_helix, mercury resistance CSC52_1739 SM00853 MutL C terminal dimerisation domain CSC52_1739 SM01340 CSC52_1739 CSC52_1740 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CSC52_1740 SM00534 ATPase domain of DNA mismatch repair MUTS family CSC52_1743 SM00729 Elongator protein 3, MiaB family, Radical SAM CSC52_1749 SM00322 K homology RNA-binding domain CSC52_1749 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSC52_1750 SM00382 ATPases associated with a variety of cellular activities CSC52_1751 SM00852 Probable molybdopterin binding domain CSC52_1753 SM00530 Helix-turn-helix XRE-family like proteins CSC52_1758 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_1758 SM00866 CSC52_1758 CSC52_1759 SM00382 ATPases associated with a variety of cellular activities CSC52_1759 SM00843 CSC52_1759 CSC52_1760 SM00849 Metallo-beta-lactamase superfamily CSC52_1761 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_1761 SM00322 K homology RNA-binding domain CSC52_1762 SM01387 CSC52_1762 CSC52_1763 SM00904 Riboflavin kinase CSC52_1769 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_1769 SM00322 K homology RNA-binding domain CSC52_1771 SM00479 CSC52_1771 CSC52_1771 SM00481 DNA polymerase alpha chain like domain CSC52_1782 SM00382 ATPases associated with a variety of cellular activities CSC52_1782 SM01086 C-terminal, D2-small domain, of ClpB protein CSC52_1786 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CSC52_1786 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CSC52_1786 SM00493 CSC52_1786 CSC52_1790 SM00257 Lysin motif CSC52_1791 SM00881 CoA binding domain CSC52_1800 SM00382 ATPases associated with a variety of cellular activities CSC52_1800 SM00962 SRP54-type protein, GTPase domain CSC52_1800 SM00963 SRP54-type protein, helical bundle domain CSC52_1802 SM00382 ATPases associated with a variety of cellular activities CSC52_1802 SM00962 SRP54-type protein, GTPase domain CSC52_1802 SM00963 SRP54-type protein, helical bundle domain CSC52_1803 SM00968 SMC proteins Flexible Hinge Domain CSC52_1804 SM00358 Double-stranded RNA binding motif CSC52_1804 SM00535 Ribonuclease III family CSC52_1806 SM00822 CSC52_1806 CSC52_1807 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CSC52_1810 SM00487 DEAD-like helicases superfamily CSC52_1810 SM00490 helicase superfamily c-terminal domain CSC52_1811 SM01120 CSC52_1811 CSC52_1811 SM01121 CSC52_1811 CSC52_1814 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CSC52_1817 SM00220 Serine/Threonine protein kinases, catalytic domain CSC52_1817 SM00740 CSC52_1817 CSC52_1818 SM00331 Sigma factor PP2C-like phosphatases CSC52_1818 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CSC52_1825 SM00487 DEAD-like helicases superfamily CSC52_1825 SM00490 helicase superfamily c-terminal domain CSC52_1827 SM01409 CSC52_1827 CSC52_1828 SM00072 Guanylate kinase homologues. CSC52_1833 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CSC52_1834 SM00851 MGS-like domain CSC52_1834 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CSC52_1834 SM01209 CSC52_1834 CSC52_1835 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CSC52_1840 SM00363 S4 RNA-binding domain CSC52_1846 SM00363 S4 RNA-binding domain CSC52_1851 SM00864 Tubulin/FtsZ family, GTPase domain CSC52_1851 SM00865 Tubulin/FtsZ family, C-terminal domain CSC52_1852 SM00842 Cell division protein FtsA CSC52_1856 SM00740 CSC52_1856 CSC52_1897 SM00465 GIY-YIG type nucleases (URI domain) CSC52_1899 SM00463 Small MutS-related domain CSC52_1899 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CSC52_1899 SM00534 ATPase domain of DNA mismatch repair MUTS family CSC52_1900 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSC52_1900 SM00481 DNA polymerase alpha chain like domain CSC52_1900 SM00483 DNA polymerase X family CSC52_1904 SM00873 B3/4 domain CSC52_1904 SM00874 tRNA synthetase B5 domain CSC52_1904 SM00896 Ferredoxin-fold anticodon binding domain CSC52_1906 SM00967 RNA 2'-O ribose methyltransferase substrate binding CSC52_1912 SM00725 NEAr Transporter domain CSC52_1913 SM00725 NEAr Transporter domain CSC52_1914 SM00725 NEAr Transporter domain CSC52_1928 SM00878 Biotin carboxylase C-terminal domain CSC52_1933 SM00838 Elongation factor G C-terminus CSC52_1943 SM00382 ATPases associated with a variety of cellular activities CSC52_1944 SM00530 Helix-turn-helix XRE-family like proteins CSC52_1948 SM00861 Transketolase, pyrimidine binding domain CSC52_1953 SM00849 Metallo-beta-lactamase superfamily CSC52_1965 SM00382 ATPases associated with a variety of cellular activities CSC52_1967 SM01209 CSC52_1967 CSC52_1967 SM01210 CSC52_1967 CSC52_1968 SM00798 AICARFT/IMPCHase bienzyme CSC52_1968 SM00851 MGS-like domain CSC52_1973 SM01211 CSC52_1973 CSC52_1977 SM01001 AIR carboxylase CSC52_1989 SM00047 Lysozyme subfamily 2 CSC52_1989 SM00644 CSC52_1989 CSC52_1990 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_2008 SM00382 ATPases associated with a variety of cellular activities CSC52_2014 SM00914 CSC52_2014 CSC52_2020 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CSC52_2034 SM00116 Domain in cystathionine beta-synthase and other proteins. CSC52_2034 SM00924 MgtE intracellular N domain CSC52_2037 SM00954 Region found in RelA / SpoT proteins CSC52_2039 SM01118 CSC52_2039 CSC52_2049 SM00382 ATPases associated with a variety of cellular activities CSC52_2050 SM00382 ATPases associated with a variety of cellular activities CSC52_2053 SM00382 ATPases associated with a variety of cellular activities CSC52_2054 SM00382 ATPases associated with a variety of cellular activities CSC52_2058 SM00825 Beta-ketoacyl synthase CSC52_2067 SM00382 ATPases associated with a variety of cellular activities CSC52_2067 SM01086 C-terminal, D2-small domain, of ClpB protein CSC52_2083 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CSC52_2086 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_2088 SM01298 CSC52_2088 CSC52_2118 SM00729 Elongator protein 3, MiaB family, Radical SAM CSC52_2129 SM00646 CSC52_2129 CSC52_2133 SM00047 Lysozyme subfamily 2 CSC52_2185 SM01040 BRO family, N-terminal domain CSC52_2186 SM00530 Helix-turn-helix XRE-family like proteins CSC52_2187 SM00530 Helix-turn-helix XRE-family like proteins CSC52_2197 SM00382 ATPases associated with a variety of cellular activities CSC52_2202 SM00382 ATPases associated with a variety of cellular activities CSC52_2202 SM00930 CSC52_2202 CSC52_2204 SM00493 CSC52_2204 CSC52_2215 SM00855 Phosphoglycerate mutase family CSC52_2222 SM00357 Cold shock protein domain CSC52_2223 SM00318 Staphylococcal nuclease homologues CSC52_2235 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_2235 SM00357 Cold shock protein domain CSC52_2235 SM00955 CSC52_2235 CSC52_2239 SM01192 CSC52_2239 CSC52_2239 SM01193 CSC52_2239 CSC52_2243 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CSC52_2254 SM00028 Tetratricopeptide repeats CSC52_2259 SM00487 DEAD-like helicases superfamily CSC52_2259 SM00490 helicase superfamily c-terminal domain CSC52_2262 SM00257 Lysin motif CSC52_2263 SM00937 CSC52_2263 CSC52_2264 SM00957 SecA DEAD-like domain CSC52_2264 SM00958 SecA preprotein cross-linking domain CSC52_2267 SM00487 DEAD-like helicases superfamily CSC52_2267 SM00490 helicase superfamily c-terminal domain CSC52_2271 SM00267 diguanylate cyclase CSC52_2282 SM00382 ATPases associated with a variety of cellular activities CSC52_2291 SM00046 Diacylglycerol kinase catalytic domain (presumed) CSC52_2295 SM00382 ATPases associated with a variety of cellular activities CSC52_2296 SM00341 Helicase and RNase D C-terminal CSC52_2296 SM00487 DEAD-like helicases superfamily CSC52_2296 SM00490 helicase superfamily c-terminal domain CSC52_2296 SM00956 CSC52_2296 CSC52_2297 SM00382 ATPases associated with a variety of cellular activities CSC52_2299 SM00797 Allophanate hydrolase subunit 2 CSC52_2300 SM00796 Allophanate hydrolase subunit 1 CSC52_2310 SM00448 cheY-homologous receiver domain CSC52_2310 SM00862 Transcriptional regulatory protein, C terminal CSC52_2311 SM00387 Histidine kinase-like ATPases CSC52_2311 SM00388 His Kinase A (phosphoacceptor) domain CSC52_2314 SM01091 Transporter associated domain CSC52_2318 SM00420 helix_turn_helix, Deoxyribose operon repressor CSC52_2318 SM01134 CSC52_2318 CSC52_2328 SM00833 Cobalamin synthesis protein cobW C-terminal domain CSC52_2329 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_2330 SM00382 ATPases associated with a variety of cellular activities CSC52_2331 SM00382 ATPases associated with a variety of cellular activities CSC52_2349 SM00342 helix_turn_helix, arabinose operon control protein CSC52_2351 SM00257 Lysin motif CSC52_2355 SM00382 ATPases associated with a variety of cellular activities CSC52_2356 SM00387 Histidine kinase-like ATPases CSC52_2357 SM00448 cheY-homologous receiver domain CSC52_2357 SM00862 Transcriptional regulatory protein, C terminal CSC52_2365 SM01120 CSC52_2365 CSC52_2369 SM00382 ATPases associated with a variety of cellular activities CSC52_2372 SM00382 ATPases associated with a variety of cellular activities CSC52_2378 SM00382 ATPases associated with a variety of cellular activities CSC52_2381 SM00529 Helix-turn-helix diphteria tox regulatory element CSC52_2381 SM00899 CSC52_2381 CSC52_2382 SM00382 ATPases associated with a variety of cellular activities CSC52_2408 SM00478 endonuclease III CSC52_2409 SM00836 DALR anticodon binding domain CSC52_2409 SM01016 Arginyl tRNA synthetase N terminal dom CSC52_2411 SM00829 Enoylreductase CSC52_2413 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CSC52_2434 SM00986 Uracil DNA glycosylase superfamily CSC52_2434 SM00987 UreE urease accessory protein, C-terminal domain CSC52_2444 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CSC52_2467 SM00838 Elongation factor G C-terminus CSC52_2467 SM00889 Elongation factor G, domain IV CSC52_2471 SM00663 RNA polymerase I subunit A N-terminus CSC52_2477 SM00649 Ribosomal protein L11/L12 CSC52_2478 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CSC52_2478 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CSC52_2483 SM00967 RNA 2'-O ribose methyltransferase substrate binding CSC52_2484 SM00535 Ribonuclease III family CSC52_2485 SM00840 CSC52_2485 CSC52_2488 SM00670 Large family of predicted nucleotide-binding domains CSC52_2489 SM00382 ATPases associated with a variety of cellular activities CSC52_2490 SM00382 ATPases associated with a variety of cellular activities CSC52_2490 SM01086 C-terminal, D2-small domain, of ClpB protein CSC52_2498 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_2517 SM00905 Dihydroneopterin aldolase CSC52_2521 SM00382 ATPases associated with a variety of cellular activities CSC52_2523 SM00977 TilS substrate C-terminal domain CSC52_2524 SM00316 Ribosomal protein S1-like RNA-binding domain CSC52_2526 SM00363 S4 RNA-binding domain CSC52_2529 SM00487 DEAD-like helicases superfamily CSC52_2529 SM00490 helicase superfamily c-terminal domain CSC52_2529 SM00982 CSC52_2529 CSC52_2529 SM01058 CarD-like/TRCF domain CSC52_2532 SM01400 CSC52_2532 CSC52_2540 SM00650 Ribosomal RNA adenine dimethylases CSC52_2541 SM00493 CSC52_2541 CSC52_2545 SM00465 GIY-YIG type nucleases (URI domain) CSC52_2556 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CSC52_2556 SM00493 CSC52_2556 CSC52_2558 SM00382 ATPases associated with a variety of cellular activities CSC52_2560 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_2560 SM00866 CSC52_2560 CSC52_2561 SM00642 Alpha-amylase domain CSC52_2572 SM00257 Lysin motif CSC52_2575 SM00382 ATPases associated with a variety of cellular activities CSC52_2575 SM00930 CSC52_2575 CSC52_2580 SM00014 Acid phosphatase homologues CSC52_2585 SM00833 Cobalamin synthesis protein cobW C-terminal domain CSC52_2621 SM00116 Domain in cystathionine beta-synthase and other proteins. CSC52_2621 SM01240 CSC52_2621 CSC52_2634 SM00855 Phosphoglycerate mutase family CSC52_2650 SM00470 ParB-like nuclease domain CSC52_2659 SM00382 ATPases associated with a variety of cellular activities CSC52_2661 SM00530 Helix-turn-helix XRE-family like proteins CSC52_2678 SM00347 helix_turn_helix multiple antibiotic resistance protein CSC52_2686 SM00506 Appr-1"-p processing enzyme CSC52_2696 SM01130 CSC52_2696 CSC52_2702 SM00382 ATPases associated with a variety of cellular activities CSC52_2733 SM00382 ATPases associated with a variety of cellular activities CSC52_2739 SM00354 helix_turn _helix lactose operon repressor CSC52_2746 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_2746 SM00866 CSC52_2746 CSC52_2749 SM00448 cheY-homologous receiver domain CSC52_2749 SM00850 LytTr DNA-binding domain CSC52_2750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CSC52_2750 SM00387 Histidine kinase-like ATPases CSC52_2761 SM00829 Enoylreductase CSC52_2763 SM00829 Enoylreductase CSC52_2777 SM00882 Coenzyme A transferase CSC52_2790 SM00342 helix_turn_helix, arabinose operon control protein CSC52_2790 SM00448 cheY-homologous receiver domain CSC52_2799 SM00382 ATPases associated with a variety of cellular activities CSC52_2807 SM00382 ATPases associated with a variety of cellular activities CSC52_2808 SM00382 ATPases associated with a variety of cellular activities CSC52_2813 SM00382 ATPases associated with a variety of cellular activities CSC52_2816 SM00487 DEAD-like helicases superfamily CSC52_2826 SM00859 Semialdehyde dehydrogenase, NAD binding domain CSC52_2838 SM00382 ATPases associated with a variety of cellular activities CSC52_2846 SM00984 UDP binding domain CSC52_2862 SM00530 Helix-turn-helix XRE-family like proteins CSC52_2866 SM00062 Bacterial periplasmic substrate-binding proteins CSC52_2867 SM00382 ATPases associated with a variety of cellular activities CSC52_2871 SM01133 CSC52_2871 CSC52_2874 SM00345 helix_turn_helix gluconate operon transcriptional repressor CSC52_2883 SM00822 CSC52_2883 CSC52_2897 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CSC52_2907 SM00857 Resolvase, N terminal domain CSC52_2908 SM00857 Resolvase, N terminal domain