locus-tag	class	description
SAGV88_00003	COG2501	S4 domain
SAGV88_00007	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
SAGV88_00012	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
SAGV88_00014	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
SAGV88_00016	COG0305	Participates in initiation and elongation during chromosome replication
SAGV88_00021	COG4863	YycH protein
SAGV88_00023	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
SAGV88_00024	COG0737	Belongs to the 5'-nucleotidase family
SAGV88_00031	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SAGV88_00031	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SAGV88_00040	COG2003	Belongs to the UPF0758 family
SAGV88_00058	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
SAGV88_00064	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
SAGV88_00065	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
SAGV88_00069	COG0584	glycerophosphoryl diester phosphodiesterase
SAGV88_00070	COG2030	dehydratase
SAGV88_00075	COG1846	Transcriptional regulator
SAGV88_00075	COG1940	carbohydrate kinase activity
SAGV88_00077	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
SAGV88_00078	COG2210	Belongs to the sulfur carrier protein TusA family
SAGV88_00079	COG1937	Protein conserved in bacteria
SAGV88_00080	COG0730	response to heat
SAGV88_00087	COG2003	Belongs to the UPF0758 family
SAGV88_00099	COG1401	restriction endodeoxyribonuclease activity
SAGV88_00107	COG2814	Major facilitator Superfamily
SAGV88_00112	COG0456	acetyltransferase
SAGV88_00118	COG0823	Involved in the tonB-independent uptake of proteins
SAGV88_00121	COG1473	amidohydrolase
SAGV88_00124	COG1283	sodium-dependent phosphate transmembrane transporter activity
SAGV88_00126	COG4716	Myosin-crossreactive antigen
SAGV88_00128	COG1620	l-lactate permease
SAGV88_00131	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_00132	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_00133	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
SAGV88_00135	COG2423	ornithine cyclodeaminase activity
SAGV88_00136	COG4264	IucA IucC family
SAGV88_00137	COG2814	Major facilitator Superfamily
SAGV88_00138	COG4264	IucA IucC family
SAGV88_00139	COG4264	IucA IucC family
SAGV88_00141	COG0019	diaminopimelate decarboxylase activity
SAGV88_00142	COG1475	DNA binding
SAGV88_00148	COG0438	transferase activity, transferring glycosyl groups
SAGV88_00155	COG0813	purine-nucleoside phosphorylase activity
SAGV88_00156	COG2814	Major facilitator Superfamily
SAGV88_00160	COG3639	organic phosphonate transmembrane transporter activity
SAGV88_00164	COG0737	Belongs to the 5'-nucleotidase family
SAGV88_00167	COG1012	belongs to the aldehyde dehydrogenase family
SAGV88_00167	COG1454	alcohol dehydrogenase
SAGV88_00173	COG1086	Polysaccharide biosynthesis protein
SAGV88_00175	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
SAGV88_00181	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
SAGV88_00183	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
SAGV88_00184	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
SAGV88_00186	COG2832	Protein of unknown function (DUF454)
SAGV88_00195	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
SAGV88_00196	COG1960	acyl-CoA dehydrogenase activity
SAGV88_00197	COG5609	conserved protein (DUF2294)
SAGV88_00207	COG1114	Component of the transport system for branched-chain amino acids
SAGV88_00208	COG1335	isochorismatase
SAGV88_00209	COG3961	Belongs to the TPP enzyme family
SAGV88_00215	COG1737	Transcriptional regulator
SAGV88_00219	COG0601	transmembrane transport
SAGV88_00220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
SAGV88_00223	COG0405	Gamma-glutamyltransferase
SAGV88_00229	COG3842	ATPase activity
SAGV88_00233	COG3833	ABC-type maltose transport systems, permease component
SAGV88_00234	COG0673	inositol 2-dehydrogenase activity
SAGV88_00235	COG0673	inositol 2-dehydrogenase activity
SAGV88_00237	COG1755	Isoprenylcysteine carboxyl methyltransferase
SAGV88_00252	COG0183	Belongs to the thiolase family
SAGV88_00254	COG1960	acyl-CoA dehydrogenase activity
SAGV88_00255	COG0318	PFAM AMP-dependent synthetase and ligase
SAGV88_00259	COG0747	negative chemotaxis
SAGV88_00260	COG3189	MarR family transcriptional regulator
SAGV88_00266	COG1263	PTS System
SAGV88_00266	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
SAGV88_00266	COG2190	(PTS) system
SAGV88_00267	COG1957	nucleoside hydrolase
SAGV88_00271	COG3414	Phosphotransferase system galactitol-specific IIB component
SAGV88_00272	COG3775	system Galactitol-specific IIC component
SAGV88_00273	COG1063	alcohol dehydrogenase
SAGV88_00275	COG1063	alcohol dehydrogenase
SAGV88_00277	COG1063	alcohol dehydrogenase
SAGV88_00278	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
SAGV88_00281	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
SAGV88_00283	COG1063	alcohol dehydrogenase
SAGV88_00284	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
SAGV88_00292	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
SAGV88_00293	COG2190	(PTS) system
SAGV88_00293	COG1263	PTS System
SAGV88_00293	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
SAGV88_00294	COG2723	6-phospho-beta-galactosidase activity
SAGV88_00296	COG2226	methyltransferase
SAGV88_00301	COG1609	Transcriptional regulator
SAGV88_00308	COG1131	(ABC) transporter
SAGV88_00312	COG3942	CHAP domain
SAGV88_00312	COG1388	LysM domain
SAGV88_00344	COG1114	Component of the transport system for branched-chain amino acids
SAGV88_00346	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
SAGV88_00347	COG0577	efflux transmembrane transporter activity
SAGV88_00352	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
SAGV88_00353	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
SAGV88_00358	COG3314	Sporulation integral membrane protein YlbJ
SAGV88_00363	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SAGV88_00369	COG3037	sugar-specific permease SgaT UlaA
SAGV88_00371	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
SAGV88_00372	COG3711	transcriptional antiterminator
SAGV88_00378	COG0346	lactoylglutathione lyase activity
SAGV88_00379	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SAGV88_00380	COG0431	NADPH-dependent FMN reductase
SAGV88_00383	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
SAGV88_00384	COG2822	iron ion transport
SAGV88_00386	COG0672	)-iron permease
SAGV88_00387	COG0805	protein transport
SAGV88_00388	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
SAGV88_00390	COG1476	TRANSCRIPTIONal
SAGV88_00392	COG1131	(ABC) transporter
SAGV88_00396	COG3226	Transcriptional regulator
SAGV88_00400	COG2226	methyltransferase
SAGV88_00402	COG0456	acetyltransferase
SAGV88_00404	COG2378	regulation of single-species biofilm formation
SAGV88_00416	COG0626	cystathionine gamma-synthase activity
SAGV88_00417	COG0626	cystathionine gamma-synthase activity
SAGV88_00419	COG1475	DNA binding
SAGV88_00420	COG0668	transmembrane transport
SAGV88_00421	COG4481	Protein conserved in bacteria
SAGV88_00422	COG0012	GTP binding
SAGV88_00443	COG1823	symporter activity
SAGV88_00449	COG2233	PERMEase
SAGV88_00452	COG0582	viral genome integration into host DNA
SAGV88_00459	COG0791	NLP P60 protein
SAGV88_00459	COG0741	lytic transglycosylase activity
SAGV88_00469	COG2946	Replication initiation factor
SAGV88_00470	COG1674	ftsk spoiiie
SAGV88_00476	COG3328	transposase activity
SAGV88_00481	COG3759	membrane
SAGV88_00516	COG0523	cobalamin synthesis protein
SAGV88_00524	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SAGV88_00526	COG5609	conserved protein (DUF2294)
SAGV88_00529	COG1647	Serine aminopeptidase, S33
SAGV88_00531	COG0733	neurotransmitter:sodium symporter activity
SAGV88_00532	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
SAGV88_00533	COG0626	cystathionine gamma-synthase activity
SAGV88_00535	COG2011	ABC-type metal ion transport system permease component
SAGV88_00536	COG1464	Belongs to the NlpA lipoprotein family
SAGV88_00544	COG0583	DNA-binding transcription factor activity
SAGV88_00545	COG0067	glutamate synthase
SAGV88_00545	COG0070	glutamate synthase
SAGV88_00545	COG0069	glutamate synthase activity
SAGV88_00546	COG0493	'glutamate synthase
SAGV88_00548	COG1263	PTS System
SAGV88_00548	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
SAGV88_00549	COG0366	Alpha amylase catalytic
SAGV88_00550	COG2188	Transcriptional regulator
SAGV88_00552	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
SAGV88_00565	COG1982	Orn Lys Arg decarboxylase major
SAGV88_00567	COG3870	Protein conserved in bacteria
SAGV88_00568	COG0470	DNA polymerase III
SAGV88_00569	COG1774	PSP1 C-terminal conserved region
SAGV88_00571	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
SAGV88_00573	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
SAGV88_00576	COG0084	hydrolase, TatD family'
SAGV88_00577	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
SAGV88_00579	COG4466	Protein conserved in bacteria
SAGV88_00581	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
SAGV88_00582	COG0251	oxidation-reduction process
SAGV88_00591	COG2244	polysaccharide biosynthetic process
SAGV88_00592	COG3956	TIGRFAM MazG family protein
SAGV88_00593	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
SAGV88_00595	COG1098	S1 RNA binding domain
SAGV88_00599	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SAGV88_00604	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
SAGV88_00618	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
SAGV88_00621	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
SAGV88_00623	COG3880	PFAM UvrB UvrC protein
SAGV88_00626	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
SAGV88_00627	COG4956	integral membrane protein (PIN domain superfamily)
SAGV88_00631	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
SAGV88_00641	COG2813	Specifically methylates the guanine in position
SAGV88_00649	COG1473	amidohydrolase
SAGV88_00656	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
SAGV88_00657	COG1428	Deoxynucleoside kinase
SAGV88_00658	COG1428	Deoxynucleoside kinase
SAGV88_00660	COG0561	phosphatase activity
SAGV88_00668	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
SAGV88_00671	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
SAGV88_00692	COG0095	Lipoate-protein ligase
SAGV88_00693	COG0083	homoserine kinase activity
SAGV88_00697	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
SAGV88_00708	COG0667	Aldo Keto reductase
SAGV88_00709	COG0655	NAD(P)H dehydrogenase (quinone) activity
SAGV88_00711	COG1078	dGTPase activity
SAGV88_00719	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
SAGV88_00720	COG4139	cobalamin transport
SAGV88_00731	COG4974	Belongs to the 'phage' integrase family
SAGV88_00742	COG0803	Belongs to the bacterial solute-binding protein 9 family
SAGV88_00743	COG1108	ABC-type Mn2 Zn2 transport systems permease components
SAGV88_00744	COG1121	(ABC) transporter
SAGV88_00745	COG1321	iron dependent repressor
SAGV88_00747	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
SAGV88_00749	COG1682	transport, permease protein
SAGV88_00750	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
SAGV88_00751	COG1216	Glycosyl transferase, family 2
SAGV88_00752	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
SAGV88_00753	COG1686	Belongs to the peptidase S11 family
SAGV88_00754	COG1132	(ABC) transporter
SAGV88_00756	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
SAGV88_00757	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
SAGV88_00758	COG1120	ATPase activity
SAGV88_00759	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_00760	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_00761	COG2376	Dihydroxyacetone kinase
SAGV88_00763	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
SAGV88_00766	COG3949	Membrane
SAGV88_00770	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
SAGV88_00773	COG1136	(ABC) transporter
SAGV88_00774	COG0577	efflux transmembrane transporter activity
SAGV88_00775	COG1392	Phosphate transport regulator
SAGV88_00776	COG0306	phosphate transporter
SAGV88_00777	COG1388	LysM domain
SAGV88_00777	COG3942	CHAP domain
SAGV88_00779	COG1917	Cupin 2, conserved barrel domain protein
SAGV88_00779	COG4977	sequence-specific DNA binding
SAGV88_00785	COG0583	DNA-binding transcription factor activity
SAGV88_00786	COG2814	Major facilitator Superfamily
SAGV88_00787	COG2839	Protein conserved in bacteria
SAGV88_00794	COG1611	Belongs to the LOG family
SAGV88_00798	COG4988	ABC transporter
SAGV88_00799	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
SAGV88_00803	COG4989	oxidoreductase activity
SAGV88_00805	COG0471	metal ion transport
SAGV88_00806	COG0415	Belongs to the DNA photolyase family
SAGV88_00814	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
SAGV88_00815	COG1349	DNA-binding transcription factor activity
SAGV88_00816	COG1105	Belongs to the carbohydrate kinase PfkB family
SAGV88_00817	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
SAGV88_00817	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
SAGV88_00817	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
SAGV88_00818	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
SAGV88_00819	COG1253	flavin adenine dinucleotide binding
SAGV88_00820	COG0656	L-ascorbic acid biosynthetic process
SAGV88_00821	COG0463	Glycosyl transferase, family 2
SAGV88_00828	COG0720	synthase
SAGV88_00831	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
SAGV88_00831	COG0512	Glutamine amidotransferase of anthranilate synthase
SAGV88_00832	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
SAGV88_00839	COG0488	(ABC) transporter
SAGV88_00840	COG0514	ATP-dependent DNA helicase (RecQ)
SAGV88_00841	COG1125	glycine betaine transport
SAGV88_00841	COG0517	IMP dehydrogenase activity
SAGV88_00842	COG1174	glycine betaine transport
SAGV88_00848	COG3104	oligopeptide transport
SAGV88_00853	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SAGV88_00855	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_00856	COG4605	iron ion homeostasis
SAGV88_00857	COG4604	ABC transporter, ATP-binding protein
SAGV88_00858	COG4607	ABC-type enterochelin transport system periplasmic component
SAGV88_00869	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SAGV88_00870	COG1739	Uncharacterized protein family UPF0029
SAGV88_00873	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
SAGV88_00875	COG1040	competence protein
SAGV88_00880	COG3942	CHAP domain
SAGV88_00880	COG1388	LysM domain
SAGV88_00893	COG0391	Required for morphogenesis under gluconeogenic growth conditions
SAGV88_00907	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
SAGV88_00908	COG1647	Serine aminopeptidase, S33
SAGV88_00909	COG0557	exoribonuclease II activity
SAGV88_00925	COG1278	Cold shock
SAGV88_00933	COG0406	alpha-ribazole phosphatase activity
SAGV88_00934	COG1279	arginine transmembrane transporter activity
SAGV88_00940	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
SAGV88_00941	COG1393	Belongs to the ArsC family
SAGV88_00944	COG3878	Protein conserved in bacteria
SAGV88_00946	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
SAGV88_00949	COG2011	ABC-type metal ion transport system permease component
SAGV88_00950	COG1464	Belongs to the NlpA lipoprotein family
SAGV88_00951	COG0582	viral genome integration into host DNA
SAGV88_00970	COG3728	DNA packaging
SAGV88_00970	COG5484	DNA packaging
SAGV88_00976	COG0396	ATPase activity
SAGV88_00977	COG0719	Fe-S assembly protein
SAGV88_00979	COG0822	iron-sulfur transferase activity
SAGV88_00984	COG1253	flavin adenine dinucleotide binding
SAGV88_00986	COG1801	Protein of unknown function DUF72
SAGV88_00987	COG0730	response to heat
SAGV88_00990	COG4470	Protein conserved in bacteria
SAGV88_00992	COG2445	Protein of unknown function DUF86
SAGV88_00998	COG1696	Membrane protein involved in D-alanine export
SAGV88_01000	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
SAGV88_01001	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
SAGV88_01002	COG4837	Protein of unknown function (DUF1462)
SAGV88_01003	COG1252	NADH dehydrogenase
SAGV88_01005	COG0316	Belongs to the HesB IscA family
SAGV88_01007	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
SAGV88_01009	COG2056	Na+-H+ antiporter family
SAGV88_01010	COG2050	protein possibly involved in aromatic compounds catabolism
SAGV88_01021	COG1098	S1 RNA binding domain
SAGV88_01022	COG1902	pentaerythritol trinitrate reductase activity
SAGV88_01025	COG0584	glycerophosphoryl diester phosphodiesterase
SAGV88_01030	COG0398	Pfam SNARE associated Golgi protein
SAGV88_01038	COG0561	phosphatase activity
SAGV88_01047	COG1881	PFAM PEBP family protein
SAGV88_01053	COG0601	transmembrane transport
SAGV88_01054	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
SAGV88_01055	COG0444	Belongs to the ABC transporter superfamily
SAGV88_01056	COG4608	Belongs to the ABC transporter superfamily
SAGV88_01057	COG4166	transmembrane transport
SAGV88_01058	COG0747	negative chemotaxis
SAGV88_01059	COG0444	Belongs to the ABC transporter superfamily
SAGV88_01060	COG4608	Belongs to the ABC transporter superfamily
SAGV88_01061	COG0601	transmembrane transport
SAGV88_01062	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
SAGV88_01068	COG1164	Oligoendopeptidase f
SAGV88_01070	COG2346	COG2346, Truncated hemoglobins
SAGV88_01073	COG2357	RelA SpoT domain protein
SAGV88_01075	COG0564	pseudouridine synthase activity
SAGV88_01076	COG2239	Acts as a magnesium transporter
SAGV88_01077	COG0569	domain protein
SAGV88_01077	COG0475	glutathione-regulated potassium exporter activity
SAGV88_01079	COG0628	permease
SAGV88_01080	COG1115	amino acid carrier protein
SAGV88_01088	COG0861	Integral membrane protein TerC family
SAGV88_01091	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
SAGV88_01092	COG0737	Belongs to the 5'-nucleotidase family
SAGV88_01093	COG4903	ComK protein
SAGV88_01096	COG4873	Protein conserved in bacteria
SAGV88_01107	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
SAGV88_01109	COG2314	TM2 domain
SAGV88_01110	COG0456	acetyltransferase
SAGV88_01111	COG1575	Belongs to the MenA family. Type 1 subfamily
SAGV88_01112	COG1169	isochorismate synthase
SAGV88_01114	COG2267	carboxylic ester hydrolase activity
SAGV88_01121	COG0436	Aminotransferase
SAGV88_01122	COG3594	Acyltransferase
SAGV88_01129	COG1316	TRANSCRIPTIONal
SAGV88_01130	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
SAGV88_01137	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
SAGV88_01140	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
SAGV88_01146	COG0138	bifunctional purine biosynthesis protein purh
SAGV88_01148	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
SAGV88_01149	COG4172	Belongs to the ABC transporter superfamily
SAGV88_01150	COG4721	ABC-type cobalt transport system, permease component
SAGV88_01153	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
SAGV88_01160	COG1271	oxidase subunit
SAGV88_01161	COG1294	oxidase, subunit
SAGV88_01162	COG0569	domain protein
SAGV88_01176	COG1176	ABC-type spermidine putrescine transport system, permease component I
SAGV88_01177	COG1177	transmembrane transport
SAGV88_01178	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
SAGV88_01184	COG0483	inositol monophosphate 1-phosphatase activity
SAGV88_01186	COG1217	gtp-binding protein TYPA
SAGV88_01188	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
SAGV88_01190	COG0772	Belongs to the SEDS family
SAGV88_01196	COG3679	Belongs to the UPF0342 family
SAGV88_01200	COG0742	ribosomal rna small subunit methyltransferase
SAGV88_01226	COG1484	DNA-dependent DNA replication
SAGV88_01247	COG1783	phage Terminase large subunit
SAGV88_01272	COG5632	N-Acetylmuramoyl-L-alanine amidase
SAGV88_01272	COG1388	LysM domain
SAGV88_01280	COG4509	Sortase family
SAGV88_01283	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
SAGV88_01289	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
SAGV88_01289	COG1796	DNA polymerase
SAGV88_01295	COG2009	succinate dehydrogenase
SAGV88_01296	COG1053	succinate dehydrogenase
SAGV88_01297	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
SAGV88_01320	COG1288	antiporter activity
SAGV88_01327	COG1011	Hydrolase
SAGV88_01332	COG4839	cell division protein FtsL
SAGV88_01333	COG0768	penicillin binding
SAGV88_01336	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
SAGV88_01337	COG0849	cell division
SAGV88_01340	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
SAGV88_01342	COG0762	integral membrane protein
SAGV88_01343	COG2302	S4 RNA-binding domain
SAGV88_01344	COG3599	regulation of cell shape
SAGV88_01346	COG2514	catechol 2,3-dioxygenase activity
SAGV88_01350	COG0564	pseudouridine synthase activity
SAGV88_01352	COG2233	PERMEase
SAGV88_01362	COG1293	RNA-binding protein homologous to eukaryotic snRNP
SAGV88_01365	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
SAGV88_01366	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
SAGV88_01369	COG2314	TM2 domain
SAGV88_01372	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
SAGV88_01372	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
SAGV88_01374	COG0631	protein serine/threonine phosphatase activity
SAGV88_01377	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
SAGV88_01381	COG1302	Protein conserved in bacteria
SAGV88_01383	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
SAGV88_01390	COG1196	nuclear chromosome segregation
SAGV88_01391	COG0552	protein localization to endoplasmic reticulum
SAGV88_01393	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
SAGV88_01407	COG0758	DNA mediated transformation
SAGV88_01426	COG0195	Participates in both transcription termination and antitermination
SAGV88_01427	COG2740	Nucleic-acid-binding protein implicated in transcription termination
SAGV88_01432	COG0196	riboflavin kinase activity
SAGV88_01437	COG2188	Transcriptional regulator
SAGV88_01438	COG0612	Peptidase, M16
SAGV88_01439	COG0612	Peptidase, M16
SAGV88_01440	COG0300	oxidoreductase activity
SAGV88_01444	COG1058	Belongs to the CinA family
SAGV88_01444	COG1546	Belongs to the CinA family
SAGV88_01448	COG1692	metallophosphoesterase
SAGV88_01449	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
SAGV88_01449	COG0674	pyruvate-flavodoxin oxidoreductase activity
SAGV88_01450	COG1013	pyruvate-flavodoxin oxidoreductase activity
SAGV88_01457	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
SAGV88_01458	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
SAGV88_01463	COG1923	regulation of RNA biosynthetic process
SAGV88_01465	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
SAGV88_01466	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
SAGV88_01467	COG0789	Transcriptional regulator
SAGV88_01497	COG2197	response regulator
SAGV88_01499	COG1525	nuclease
SAGV88_01502	COG0527	aspartate kinase activity
SAGV88_01503	COG0460	homoserine dehydrogenase
SAGV88_01504	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
SAGV88_01508	COG0833	amino acid
SAGV88_01516	COG2340	Cysteine-rich secretory protein family
SAGV88_01524	COG4846	Membrane protein involved in cytochrome C biogenesis
SAGV88_01528	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
SAGV88_01531	COG0824	Thioesterase
SAGV88_01537	COG1115	amino acid carrier protein
SAGV88_01540	COG0628	permease
SAGV88_01541	COG0392	lysyltransferase activity
SAGV88_01541	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
SAGV88_01545	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
SAGV88_01547	COG1363	Peptidase, m42
SAGV88_01548	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
SAGV88_01549	COG0512	Glutamine amidotransferase of anthranilate synthase
SAGV88_01559	COG0561	phosphatase activity
SAGV88_01567	COG0704	Plays a role in the regulation of phosphate uptake
SAGV88_01569	COG0581	inorganic phosphate transmembrane transporter activity
SAGV88_01570	COG0573	inorganic phosphate transmembrane transporter activity
SAGV88_01576	COG0488	(ABC) transporter
SAGV88_01579	COG0527	aspartate kinase activity
SAGV88_01580	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
SAGV88_01599	COG4548	von Willebrand factor, type A
SAGV88_01600	COG0714	Associated with various cellular activities
SAGV88_01609	COG0671	phosphoesterase, PA-phosphatase related
SAGV88_01621	COG1413	lyase activity
SAGV88_01622	COG1413	lyase activity
SAGV88_01625	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
SAGV88_01631	COG0531	amino acid
SAGV88_01634	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SAGV88_01635	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
SAGV88_01638	COG0116	Belongs to the methyltransferase superfamily
SAGV88_01644	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
SAGV88_01644	COG4499	WXG100 protein secretion system (Wss), protein YukC
SAGV88_01646	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
SAGV88_01647	COG3935	DnaD domain protein
SAGV88_01652	COG0438	transferase activity, transferring glycosyl groups
SAGV88_01653	COG1694	Mazg nucleotide pyrophosphohydrolase
SAGV88_01654	COG2738	Putative neutral zinc metallopeptidase
SAGV88_01655	COG4347	Protein of unknown function (DUF1405)
SAGV88_01662	COG0142	geranyltranstransferase activity
SAGV88_01674	COG0492	ferredoxin-NADP+ reductase activity
SAGV88_01677	COG0514	ATP-dependent DNA helicase (RecQ)
SAGV88_01679	COG1141	Ferredoxin
SAGV88_01688	COG1388	LysM domain
SAGV88_01688	COG0860	N-Acetylmuramoyl-L-alanine amidase
SAGV88_01698	COG3953	SLT domain
SAGV88_01698	COG5280	Phage tail tape measure protein TP901
SAGV88_01744	COG3645	SOS response
SAGV88_01744	COG3646	Phage regulatory protein
SAGV88_01751	COG0582	viral genome integration into host DNA
SAGV88_01754	COG5002	protein histidine kinase activity
SAGV88_01755	COG0745	RESPONSE REGULATOR receiver
SAGV88_01756	COG1187	pseudouridine synthase activity
SAGV88_01761	COG0735	belongs to the Fur family
SAGV88_01762	COG0494	nUDIX hydrolase
SAGV88_01763	COG0667	Aldo Keto reductase
SAGV88_01765	COG4221	oxidoreductase activity
SAGV88_01769	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
SAGV88_01772	COG0366	Alpha amylase catalytic
SAGV88_01773	COG1609	Transcriptional regulator
SAGV88_01776	COG2195	Cleaves the N-terminal amino acid of tripeptides
SAGV88_01778	COG4129	membrane
SAGV88_01780	COG0508	dehydrogenase complex catalyzes the overall conversion of
SAGV88_01781	COG0022	dehydrogenase e1 component
SAGV88_01782	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
SAGV88_01783	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
SAGV88_01784	COG0497	DNA recombination
SAGV88_01790	COG1302	Protein conserved in bacteria
SAGV88_01791	COG0439	Biotin carboxylase
SAGV88_01792	COG0511	ligase activity, forming carbon-carbon bonds
SAGV88_01794	COG0006	proline dipeptidase activity
SAGV88_01797	COG0095	Lipoate-protein ligase
SAGV88_01798	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
SAGV88_01807	COG4537	Required for transformation and DNA binding
SAGV88_01808	COG1459	type II secretion system
SAGV88_01809	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
SAGV88_01810	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
SAGV88_01811	COG0011	TIGRFAM Protein of
SAGV88_01812	COG1940	carbohydrate kinase activity
SAGV88_01814	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
SAGV88_01816	COG0768	penicillin binding
SAGV88_01819	COG1108	ABC-type Mn2 Zn2 transport systems permease components
SAGV88_01820	COG1121	(ABC) transporter
SAGV88_01822	COG0513	Belongs to the DEAD box helicase family
SAGV88_01824	COG2384	SAM-dependent methyltransferase
SAGV88_01828	COG0517	IMP dehydrogenase activity
SAGV88_01832	COG0295	cytidine deaminase activity
SAGV88_01835	COG1702	phosphate starvation-inducible protein PhoH
SAGV88_01839	COG1030	water channel activity
SAGV88_01841	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SAGV88_01842	COG1385	rRNA (uridine-N3-)-methyltransferase activity
SAGV88_01848	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SAGV88_01851	COG1466	dna polymerase III delta subunit
SAGV88_01852	COG2333	competence protein COMEC
SAGV88_01852	COG0658	competence protein
SAGV88_01853	COG2131	deaminase
SAGV88_01856	COG2226	methyltransferase
SAGV88_01857	COG0799	negative regulation of ribosome biogenesis
SAGV88_01858	COG1713	HD superfamily hydrolase involved in NAD metabolism
SAGV88_01860	COG1534	Rna-binding protein
SAGV88_01862	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
SAGV88_01863	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
SAGV88_01868	COG3177	Filamentation induced by cAMP protein fic
SAGV88_01869	COG1914	H( )-stimulated, divalent metal cation uptake system
SAGV88_01871	COG0439	Biotin carboxylase
SAGV88_01872	COG0511	ligase activity, forming carbon-carbon bonds
SAGV88_01873	COG1984	allophanate hydrolase subunit 2
SAGV88_01874	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
SAGV88_01877	COG0826	peptidase U32
SAGV88_01878	COG0826	peptidase U32
SAGV88_01884	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
SAGV88_01888	COG1104	cysteine desulfurase activity
SAGV88_01889	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SAGV88_01893	COG1959	2 iron, 2 sulfur cluster binding
SAGV88_01894	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
SAGV88_01895	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
SAGV88_01904	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
SAGV88_01904	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
SAGV88_01905	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SAGV88_01905	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SAGV88_01907	COG1862	Preprotein translocase
SAGV88_01916	COG2868	ribosomal protein
SAGV88_01924	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
SAGV88_01932	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
SAGV88_01934	COG0285	dihydrofolate synthase activity
SAGV88_01937	COG2818	Glycosylase
SAGV88_01944	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SAGV88_01950	COG4112	unkown
SAGV88_01954	COG0833	amino acid
SAGV88_01956	COG1484	DNA-dependent DNA replication
SAGV88_01962	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SAGV88_01962	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SAGV88_01964	COG5002	protein histidine kinase activity
SAGV88_01965	COG0745	RESPONSE REGULATOR receiver
SAGV88_01968	COG0372	Belongs to the citrate synthase family
SAGV88_01969	COG1113	amino acid transport
SAGV88_01977	COG0281	malic enzyme
SAGV88_01979	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
SAGV88_01980	COG4109	DRTGG domain
SAGV88_01989	COG0827	DNA restriction-modification system
SAGV88_01993	COG1104	cysteine desulfurase activity
SAGV88_01996	COG1956	GAF domain-containing protein
SAGV88_01998	COG0584	glycerophosphoryl diester phosphodiesterase
SAGV88_01999	COG1764	response to oxidative stress
SAGV88_02000	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
SAGV88_02001	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
SAGV88_02004	COG1263	PTS System
SAGV88_02004	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
SAGV88_02005	COG0204	Acyl-transferase
SAGV88_02006	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SAGV88_02012	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
SAGV88_02013	COG0454	-acetyltransferase
SAGV88_02017	COG1605	Chorismate mutase
SAGV88_02017	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
SAGV88_02022	COG1674	ftsk spoiiie
SAGV88_02023	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SAGV88_02025	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
SAGV88_02026	COG1363	Peptidase, m42
SAGV88_02028	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
SAGV88_02031	COG0510	thiamine kinase activity
SAGV88_02035	COG1187	pseudouridine synthase activity
SAGV88_02036	COG2244	polysaccharide biosynthetic process
SAGV88_02037	COG2081	HI0933 family
SAGV88_02041	COG2814	Major facilitator Superfamily
SAGV88_02043	COG1242	4 iron, 4 sulfur cluster binding
SAGV88_02044	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
SAGV88_02045	COG1846	Transcriptional regulator
SAGV88_02051	COG2267	carboxylic ester hydrolase activity
SAGV88_02052	COG0506	proline dehydrogenase activity
SAGV88_02056	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SAGV88_02056	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SAGV88_02060	COG4193	domain, Protein
SAGV88_02060	COG5632	N-Acetylmuramoyl-L-alanine amidase
SAGV88_02060	COG3266	domain, Protein
SAGV88_02066	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
SAGV88_02076	COG0656	L-ascorbic acid biosynthetic process
SAGV88_02082	COG1506	peptidase
SAGV88_02116	COG1131	(ABC) transporter
SAGV88_02130	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
SAGV88_02135	COG1131	(ABC) transporter
SAGV88_02136	COG0537	adenosine 5'-monophosphoramidase activity
SAGV88_02143	COG0420	3'-5' exonuclease activity
SAGV88_02147	COG2197	response regulator
SAGV88_02148	COG2203	Gaf domain
SAGV88_02148	COG4585	Histidine kinase
SAGV88_02149	COG0564	pseudouridine synthase activity
SAGV88_02155	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
SAGV88_02156	COG1126	abc transporter atp-binding protein
SAGV88_02157	COG0765	amino acid transport
SAGV88_02171	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
SAGV88_02172	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
SAGV88_02174	COG4129	membrane
SAGV88_02178	COG1988	membrane-bound metal-dependent
SAGV88_02180	COG1134	teichoic acid transport
SAGV88_02180	COG1388	LysM domain
SAGV88_02187	COG0535	radical SAM domain protein
SAGV88_02188	COG1607	acyl-coa hydrolase
SAGV88_02189	COG2309	aminopeptidase activity
SAGV88_02194	COG1295	ribonuclease BN
SAGV88_02195	COG2197	response regulator
SAGV88_02215	COG4851	CamS sex pheromone cAM373 precursor
SAGV88_02217	COG0210	DNA helicase
SAGV88_02219	COG4496	protein, YerC YecD
SAGV88_02226	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
SAGV88_02228	COG0077	Prephenate dehydratase
SAGV88_02229	COG0471	metal ion transport
SAGV88_02231	COG1335	isochorismatase
SAGV88_02234	COG1012	belongs to the aldehyde dehydrogenase family
SAGV88_02245	COG1131	(ABC) transporter
SAGV88_02248	COG1725	Transcriptional regulator
SAGV88_02262	COG1388	LysM domain
SAGV88_02262	COG0860	N-Acetylmuramoyl-L-alanine amidase
SAGV88_02264	COG1388	LysM domain
SAGV88_02264	COG5632	N-Acetylmuramoyl-L-alanine amidase
SAGV88_02271	COG0739	heme binding
SAGV88_02306	COG1484	DNA-dependent DNA replication
SAGV88_02333	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
SAGV88_02334	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
SAGV88_02335	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
SAGV88_02339	COG5484	DNA packaging
SAGV88_02339	COG3728	DNA packaging
SAGV88_02354	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
SAGV88_02355	COG1621	beta-fructofuranosidase activity
SAGV88_02356	COG1609	Transcriptional regulator
SAGV88_02357	COG0004	ammonium transporteR
SAGV88_02358	COG0425	Belongs to the sulfur carrier protein TusA family
SAGV88_02359	COG2391	methyltransferase activity
SAGV88_02361	COG0488	(ABC) transporter
SAGV88_02363	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
SAGV88_02365	COG0456	acetyltransferase
SAGV88_02366	COG1214	PFAM Peptidase M22, glycoprotease
SAGV88_02367	COG0802	atpase or kinase
SAGV88_02370	COG0028	Belongs to the TPP enzyme family
SAGV88_02391	COG0456	acetyltransferase
SAGV88_02394	COG2183	response to ionizing radiation
SAGV88_02395	COG1191	sigma factor activity
SAGV88_02397	COG1366	Belongs to the anti-sigma-factor antagonist family
SAGV88_02398	COG2208	phosphoserine phosphatase activity
SAGV88_02404	COG3428	Bacterial PH domain
SAGV88_02411	COG2205	protein histidine kinase activity
SAGV88_02412	COG0745	RESPONSE REGULATOR receiver
SAGV88_02414	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
SAGV88_02416	COG0772	Belongs to the SEDS family
SAGV88_02419	COG1937	Protein conserved in bacteria
SAGV88_02421	COG1418	mRNA catabolic process
SAGV88_02430	COG0629	single-stranded DNA binding
SAGV88_02446	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
SAGV88_02451	COG0009	L-threonylcarbamoyladenylate synthase
SAGV88_02452	COG2890	protein-(glutamine-N5) methyltransferase activity
SAGV88_02456	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
SAGV88_02465	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
SAGV88_02474	COG0813	purine-nucleoside phosphorylase activity
SAGV88_02475	COG0783	Belongs to the Dps family
SAGV88_02480	COG1482	cell wall glycoprotein biosynthetic process
SAGV88_02481	COG0702	epimerase
SAGV88_02482	COG0640	Transcriptional regulator
SAGV88_02491	COG1119	ATPase activity
SAGV88_02494	COG3711	transcriptional antiterminator
SAGV88_02514	COG0489	protein tyrosine kinase activity
SAGV88_02515	COG2814	Major facilitator Superfamily
SAGV88_02518	COG1272	protein, Hemolysin III
SAGV88_02520	COG1988	membrane-bound metal-dependent
SAGV88_02522	COG3314	Sporulation integral membrane protein YlbJ
SAGV88_02523	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_02524	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
SAGV88_02525	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
SAGV88_02526	COG3457	Alanine racemase
SAGV88_02527	COG4264	IucA IucC family
SAGV88_02528	COG2814	Major facilitator Superfamily
SAGV88_02537	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
SAGV88_02540	COG2130	NADP-dependent
SAGV88_02550	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
SAGV88_02553	COG0656	L-ascorbic acid biosynthetic process
SAGV88_02554	COG0789	Transcriptional regulator
SAGV88_02555	COG5492	domain, Protein
SAGV88_02559	COG3527	Alpha-acetolactate decarboxylase
SAGV88_02560	COG0028	Belongs to the TPP enzyme family
SAGV88_02565	COG0542	response to heat
SAGV88_02584	COG0201	protein transport
SAGV88_02607	COG2252	PERMEase
SAGV88_02616	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
SAGV88_02628	COG1763	Mo-molybdopterin cofactor biosynthetic process
SAGV88_02632	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
SAGV88_02634	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
SAGV88_02635	COG4149	molybdate abc transporter
SAGV88_02636	COG0725	ABC transporter, periplasmic molybdate-binding protein
SAGV88_02639	COG1268	BioY protein
SAGV88_02643	COG1960	acyl-CoA dehydrogenase activity
SAGV88_02644	COG4413	Urea transporter
SAGV88_02656	COG3942	CHAP domain
SAGV88_02657	COG1757	Na H antiporter
SAGV88_02661	COG3942	CHAP domain
SAGV88_02678	COG1113	amino acid transport
SAGV88_02682	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
SAGV88_02683	COG0385	Bile acid
SAGV88_02685	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
SAGV88_02685	COG1263	PTS System
SAGV88_02686	COG1737	Transcriptional regulator
SAGV88_02693	COG1028	Short-chain dehydrogenase reductase Sdr
SAGV88_02694	COG1473	amidohydrolase
SAGV88_02697	COG0583	DNA-binding transcription factor activity
SAGV88_02703	COG2258	MOSC domain
SAGV88_02708	COG1668	transmembrane transport
SAGV88_02709	COG4152	abc transporter atp-binding protein
SAGV88_02710	COG3152	Membrane
SAGV88_02713	COG0786	glutamate:sodium symporter activity
SAGV88_02715	COG0598	Magnesium transport protein CorA
SAGV88_02718	COG0657	acetylesterase activity
SAGV88_02720	COG2814	Major facilitator Superfamily
SAGV88_02721	COG1566	PFAM secretion protein HlyD family protein
SAGV88_02723	COG2814	Major facilitator Superfamily
SAGV88_02736	COG1620	l-lactate permease
SAGV88_02740	COG0604	alcohol dehydrogenase
SAGV88_02741	COG0456	acetyltransferase
SAGV88_02746	COG1511	domain protein
SAGV88_02749	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
SAGV88_02749	COG1263	PTS System
SAGV88_02753	COG3871	stress protein (general stress protein 26)
SAGV88_02764	COG0789	Transcriptional regulator
SAGV88_02768	COG2181	nitrate reductase activity
SAGV88_02770	COG1140	nitrate reductase beta subunit
SAGV88_02771	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
SAGV88_02773	COG2146	nitrite reductase [NAD(P)H] activity
SAGV88_02774	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
SAGV88_02776	COG0454	-acetyltransferase
SAGV88_02777	COG2116	formate transmembrane transporter activity
SAGV88_02780	COG3443	Belongs to the bacterial solute-binding protein 9 family
SAGV88_02780	COG0803	Belongs to the bacterial solute-binding protein 9 family
SAGV88_02786	COG1126	abc transporter atp-binding protein
SAGV88_02787	COG0765	amino acid transport
SAGV88_02788	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SAGV88_02789	COG2814	Major facilitator Superfamily
SAGV88_02793	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
SAGV88_02802	COG0156	8-amino-7-oxononanoate synthase activity
SAGV88_02804	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
SAGV88_02805	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
SAGV88_02806	COG1132	(ABC) transporter
SAGV88_02807	COG2375	cellular response to nickel ion
SAGV88_02807	COG1132	(ABC) transporter
SAGV88_02812	COG1929	Belongs to the glycerate kinase type-1 family
SAGV88_02814	COG2814	Major facilitator Superfamily
SAGV88_02818	COG1113	amino acid transport
SAGV88_02820	COG0531	amino acid
SAGV88_02824	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
SAGV88_02826	COG1174	glycine betaine transport
SAGV88_02828	COG1174	glycine betaine transport
SAGV88_02831	COG4430	Bacteriocin-protection, YdeI or OmpD-Associated
SAGV88_02832	COG0531	amino acid
SAGV88_02833	COG2272	Belongs to the type-B carboxylesterase lipase family
SAGV88_02834	COG2814	Major facilitator Superfamily
SAGV88_02836	COG0390	transport system, permease component
SAGV88_02837	COG4619	ABC transporter
SAGV88_02838	COG1363	Peptidase, m42
SAGV88_02841	COG4808	Protein conserved in bacteria
SAGV88_02842	COG0069	glutamate synthase activity
SAGV88_02846	COG1124	(ABC) transporter
SAGV88_02847	COG0444	Belongs to the ABC transporter superfamily
SAGV88_02848	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
SAGV88_02849	COG0601	transmembrane transport
SAGV88_02850	COG0747	negative chemotaxis
SAGV88_02856	COG1028	Short-chain dehydrogenase reductase Sdr
SAGV88_02857	COG1028	Short-chain dehydrogenase reductase Sdr
SAGV88_02858	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
SAGV88_02859	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
SAGV88_02870	COG0494	nUDIX hydrolase
SAGV88_02877	COG1846	Transcriptional regulator
SAGV88_02878	COG1846	Transcriptional regulator
SAGV88_02886	COG1070	Carbohydrate kinase
SAGV88_02887	COG1802	Transcriptional regulator
SAGV88_02888	COG0789	Transcriptional regulator
SAGV88_02889	COG2357	RelA SpoT domain protein
SAGV88_02890	COG4876	unkown
SAGV88_02892	COG2271	Major facilitator Superfamily
SAGV88_02895	COG0586	Pfam SNARE associated Golgi protein
SAGV88_02896	COG2814	Major facilitator Superfamily
SAGV88_02897	COG1846	Transcriptional regulator
SAGV88_02898	COG1131	(ABC) transporter
SAGV88_02901	COG3949	Membrane
SAGV88_02902	COG0400	carboxylic ester hydrolase activity
SAGV88_02903	COG0346	lactoylglutathione lyase activity
SAGV88_02904	COG1846	Transcriptional regulator
SAGV88_02906	COG2514	catechol 2,3-dioxygenase activity
SAGV88_02909	COG0561	phosphatase activity
SAGV88_02910	COG1131	(ABC) transporter
SAGV88_02912	COG3764	Sortase (surface protein transpeptidase)
SAGV88_02915	COG1760	l-serine dehydratase
SAGV88_02916	COG1760	l-serine dehydratase
SAGV88_02919	COG0697	spore germination
SAGV88_02920	COG0657	acetylesterase activity
SAGV88_02925	COG0028	Belongs to the TPP enzyme family
SAGV88_02928	COG0583	DNA-binding transcription factor activity
SAGV88_02930	COG3942	CHAP domain
SAGV88_02934	COG3425	synthase
SAGV88_02935	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
SAGV88_02936	COG0542	response to heat
SAGV88_02941	COG2409	Drug exporters of the RND superfamily
SAGV88_02951	COG0436	Aminotransferase
SAGV88_02976	COG2826	transposase and inactivated derivatives, IS30 family
SAGV88_02980	COG3682	Transcriptional regulator
SAGV88_02988	COG1674	ftsk spoiiie
SAGV88_02989	COG0433	COG0433 Predicted ATPase
SAGV88_02993	COG2946	Replication initiation factor
SAGV88_03000	COG3001	Fructosamine kinase
SAGV88_03001	COG0167	dihydroorotate dehydrogenase activity
SAGV88_03011	COG3527	Alpha-acetolactate decarboxylase
SAGV88_03013	COG0531	amino acid
SAGV88_03020	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
SAGV88_03024	COG1012	belongs to the aldehyde dehydrogenase family
SAGV88_03025	COG1510	regulation of RNA biosynthetic process
SAGV88_03026	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
SAGV88_03029	COG2851	Citrate transporter
SAGV88_03032	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
SAGV88_03033	COG0386	Belongs to the glutathione peroxidase family
SAGV88_03037	COG1136	(ABC) transporter
SAGV88_03038	COG2205	protein histidine kinase activity
SAGV88_03039	COG0745	RESPONSE REGULATOR receiver
SAGV88_03041	COG1785	Belongs to the alkaline phosphatase family
SAGV88_03043	COG1846	Transcriptional regulator
SAGV88_03051	COG1438	arginine binding
SAGV88_03058	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
SAGV88_03058	COG3711	transcriptional antiterminator
SAGV88_03059	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
SAGV88_03059	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
SAGV88_03059	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
SAGV88_03060	COG1482	cell wall glycoprotein biosynthetic process
SAGV88_03062	COG3942	CHAP domain
SAGV88_03062	COG1705	Flagellar rod assembly protein muramidase FlgJ
SAGV88_03063	COG3433	isochorismatase activity
SAGV88_03063	COG1535	isochorismatase
SAGV88_03066	COG0438	transferase activity, transferring glycosyl groups
SAGV88_03074	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SAGV88_03079	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SAGV88_03100	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SAGV88_03116	COG0471	metal ion transport
SAGV88_03117	COG2962	Rard protein
SAGV88_03120	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
SAGV88_03124	COG1136	(ABC) transporter
SAGV88_03125	COG0577	efflux transmembrane transporter activity
SAGV88_03132	COG1404	Belongs to the peptidase S8 family
SAGV88_03133	COG1278	Cold shock
SAGV88_03138	COG1475	DNA binding
SAGV88_03209	COG1073	alpha beta
SAGV88_03254	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
SAGV88_03255	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
SAGV88_03322	COG0646	methionine synthase
SAGV88_03322	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
SAGV88_03341	COG3328	transposase activity
SAGV88_03438	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SAGV88_03583	COG1131	(ABC) transporter
SAGV88_03690	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
SAGV88_03839	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria