locus-tag class description DD548_00005 PF08299 Bacterial dnaA protein helix-turn-helix DD548_00005 PF00308 Bacterial dnaA protein DD548_00005 PF11638 DnaA N-terminal domain DD548_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DD548_00010 PF02767 DNA polymerase III beta subunit, central domain DD548_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DD548_00020 PF02463 RecF/RecN/SMC N terminal domain DD548_00025 PF00204 DNA gyrase B DD548_00025 PF00986 DNA gyrase B subunit, carboxyl terminus DD548_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_00025 PF01751 Toprim domain DD548_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A DD548_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller DD548_00035 PF01256 Carbohydrate kinase DD548_00040 PF00221 Aromatic amino acid lyase DD548_00050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DD548_00050 PF02403 Seryl-tRNA synthetase N-terminal domain DD548_00065 PF00561 alpha/beta hydrolase fold DD548_00075 PF01368 DHH family DD548_00075 PF02272 DHHA1 domain DD548_00080 PF03948 Ribosomal protein L9, C-terminal domain DD548_00080 PF01281 Ribosomal protein L9, N-terminal domain DD548_00085 PF03796 DnaB-like helicase C terminal domain DD548_00085 PF00772 DnaB-like helicase N terminal domain DD548_00095 PF00709 Adenylosuccinate synthetase DD548_00110 PF00486 Transcriptional regulatory protein, C terminal DD548_00110 PF00072 Response regulator receiver domain DD548_00115 PF13426 PAS domain DD548_00115 PF00672 HAMP domain DD548_00115 PF00512 His Kinase A (phospho-acceptor) domain DD548_00115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_00120 PF07435 YycH protein DD548_00130 PF00753 Metallo-beta-lactamase superfamily DD548_00135 PF02872 5'-nucleotidase, C-terminal domain DD548_00135 PF00149 Calcineurin-like phosphoesterase DD548_00140 PF02590 Predicted SPOUT methyltransferase DD548_00160 PF01207 Dihydrouridine synthase (Dus) DD548_00170 PF01925 Sulfite exporter TauE/SafE DD548_00175 PF02583 Metal-sensitive transcriptional repressor DD548_00180 PF13686 DsrE/DsrF/DrsH-like family DD548_00185 PF00753 Metallo-beta-lactamase superfamily DD548_00205 PF01207 Dihydrouridine synthase (Dus) DD548_00225 PF03358 NADPH-dependent FMN reductase DD548_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DD548_00240 PF03466 LysR substrate binding domain DD548_00260 PF00388 Phosphatidylinositol-specific phospholipase C, X domain DD548_00265 PF04507 Csa1 family DD548_00270 PF04507 Csa1 family DD548_00275 PF04507 Csa1 family DD548_00280 PF04507 Csa1 family DD548_00285 PF12833 Helix-turn-helix domain DD548_00290 PF07687 Peptidase dimerisation domain DD548_00290 PF01546 Peptidase family M20/M25/M40 DD548_00295 PF07690 Major Facilitator Superfamily DD548_00300 PF02690 Na+/Pi-cotransporter DD548_00305 PF06100 MCRA family DD548_00310 PF00892 EamA-like transporter family DD548_00315 PF00155 Aminotransferase class I and II DD548_00315 PF00392 Bacterial regulatory proteins, gntR family DD548_00325 PF02652 L-lactate permease DD548_00330 PF04650 YSIRK type signal peptide DD548_00330 PF03373 Octapeptide repeat DD548_00330 PF01476 LysM domain DD548_00330 PF00746 LPXTG cell wall anchor motif DD548_00330 PF02216 B domain DD548_00345 PF01032 FecCD transport family DD548_00350 PF01032 FecCD transport family DD548_00355 PF01497 Periplasmic binding protein DD548_00360 PF00291 Pyridoxal-phosphate dependent enzyme DD548_00365 PF02423 Ornithine cyclodeaminase/mu-crystallin family DD548_00370 PF06276 Ferric iron reductase FhuF-like transporter DD548_00370 PF04183 IucA / IucC family DD548_00375 PF00083 Sugar (and other) transporter DD548_00375 PF07690 Major Facilitator Superfamily DD548_00380 PF04183 IucA / IucC family DD548_00380 PF06276 Ferric iron reductase FhuF-like transporter DD548_00385 PF06276 Ferric iron reductase FhuF-like transporter DD548_00385 PF04183 IucA / IucC family DD548_00390 PF03328 HpcH/HpaI aldolase/citrate lyase family DD548_00395 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DD548_00395 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DD548_00400 PF02195 ParB-like nuclease domain DD548_00430 PF01370 NAD dependent epimerase/dehydratase family DD548_00435 PF02397 Bacterial sugar transferase DD548_00440 PF00534 Glycosyl transferases group 1 DD548_00455 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DD548_00455 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DD548_00465 PF07702 UTRA domain DD548_00465 PF00392 Bacterial regulatory proteins, gntR family DD548_00475 PF01048 Phosphorylase superfamily DD548_00480 PF07690 Major Facilitator Superfamily DD548_00485 PF01791 DeoC/LacD family aldolase DD548_00490 PF01676 Metalloenzyme superfamily DD548_00495 PF00528 Binding-protein-dependent transport system inner membrane component DD548_00500 PF00528 Binding-protein-dependent transport system inner membrane component DD548_00505 PF00005 ABC transporter DD548_00520 PF00149 Calcineurin-like phosphoesterase DD548_00520 PF02872 5'-nucleotidase, C-terminal domain DD548_00530 PF02486 Replication initiation factor DD548_00535 PF02486 Replication initiation factor DD548_00555 PF00171 Aldehyde dehydrogenase family DD548_00555 PF00465 Iron-containing alcohol dehydrogenase DD548_00560 PF02706 Chain length determinant protein DD548_00565 PF13614 AAA domain DD548_00575 PF02719 Polysaccharide biosynthesis protein DD548_00580 PF02719 Polysaccharide biosynthesis protein DD548_00580 PF08485 Polysaccharide biosynthesis protein C-terminal DD548_00585 PF01370 NAD dependent epimerase/dehydratase family DD548_00590 PF02350 UDP-N-acetylglucosamine 2-epimerase DD548_00595 PF00132 Bacterial transferase hexapeptide (six repeats) DD548_00620 PF02397 Bacterial sugar transferase DD548_00630 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DD548_00630 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DD548_00630 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DD548_00635 PF02350 UDP-N-acetylglucosamine 2-epimerase DD548_00640 PF03992 Antibiotic biosynthesis monooxygenase DD548_00645 PF04304 Protein of unknown function (DUF454) DD548_00650 PF00171 Aldehyde dehydrogenase family DD548_00655 PF01545 Cation efflux family DD548_00655 PF16916 Dimerisation domain of Zinc Transporter DD548_00670 PF00005 ABC transporter DD548_00680 PF00528 Binding-protein-dependent transport system inner membrane component DD548_00685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DD548_00685 PF02770 Acyl-CoA dehydrogenase, middle domain DD548_00685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DD548_00690 PF10057 Uncharacterized conserved protein (DUF2294) DD548_00695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_00695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_00705 PF00501 AMP-binding enzyme DD548_00705 PF00975 Thioesterase domain DD548_00705 PF00550 Phosphopantetheine attachment site DD548_00705 PF13193 AMP-binding enzyme C-terminal domain DD548_00705 PF00668 Condensation domain DD548_00720 PF00696 Amino acid kinase family DD548_00725 PF01960 ArgJ family DD548_00730 PF02774 Semialdehyde dehydrogenase, dimerisation domain DD548_00730 PF01118 Semialdehyde dehydrogenase, NAD binding domain DD548_00735 PF00202 Aminotransferase class-III DD548_00740 PF05525 Branched-chain amino acid transport protein DD548_00745 PF00857 Isochorismatase family DD548_00750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DD548_00750 PF00205 Thiamine pyrophosphate enzyme, central domain DD548_00750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DD548_00760 PF02378 Phosphotransferase system, EIIC DD548_00760 PF00367 phosphotransferase system, EIIB DD548_00760 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DD548_00775 PF00367 phosphotransferase system, EIIB DD548_00775 PF02378 Phosphotransferase system, EIIC DD548_00780 PF01380 SIS domain DD548_00780 PF01418 Helix-turn-helix domain, rpiR family DD548_00790 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DD548_00790 PF18766 SWI2/SNF2 ATPase DD548_00790 PF12008 Type I restriction and modification enzyme - subunit R C terminal DD548_00810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DD548_00810 PF00005 ABC transporter DD548_00820 PF00528 Binding-protein-dependent transport system inner membrane component DD548_00820 PF12911 N-terminal TM domain of oligopeptide transport permease C DD548_00835 PF04507 Csa1 family DD548_00840 PF02525 Flavodoxin-like fold DD548_00845 PF01551 Peptidase family M23 DD548_00845 PF08460 Bacterial SH3 domain DD548_00850 PF03459 TOBE domain DD548_00850 PF17912 MalK OB fold domain DD548_00850 PF00005 ABC transporter DD548_00860 PF00528 Binding-protein-dependent transport system inner membrane component DD548_00865 PF00528 Binding-protein-dependent transport system inner membrane component DD548_00870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DD548_00870 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DD548_00875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DD548_00875 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DD548_00885 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DD548_00890 PF07690 Major Facilitator Superfamily DD548_00910 PF02901 Pyruvate formate lyase-like DD548_00910 PF01228 Glycine radical DD548_00915 PF04055 Radical SAM superfamily DD548_00935 PF04022 Staphylocoagulase repeat DD548_00935 PF08764 Staphylococcus aureus coagulase DD548_00945 PF00108 Thiolase, N-terminal domain DD548_00945 PF02803 Thiolase, C-terminal domain DD548_00950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DD548_00950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DD548_00955 PF02770 Acyl-CoA dehydrogenase, middle domain DD548_00955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DD548_00955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DD548_00960 PF00501 AMP-binding enzyme DD548_00960 PF13193 AMP-binding enzyme C-terminal domain DD548_00965 PF01144 Coenzyme A transferase DD548_00975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DD548_00980 PF04343 Protein of unknown function, DUF488 DD548_00995 PF00970 Oxidoreductase FAD-binding domain DD548_00995 PF00042 Globin DD548_00995 PF00175 Oxidoreductase NAD-binding domain DD548_01005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DD548_01005 PF00056 lactate/malate dehydrogenase, NAD binding domain DD548_01015 PF00367 phosphotransferase system, EIIB DD548_01015 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DD548_01015 PF02378 Phosphotransferase system, EIIC DD548_01020 PF01156 Inosine-uridine preferring nucleoside hydrolase DD548_01040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DD548_01045 PF03611 PTS system sugar-specific permease component DD548_01050 PF00107 Zinc-binding dehydrogenase DD548_01050 PF08240 Alcohol dehydrogenase GroES-like domain DD548_01060 PF00107 Zinc-binding dehydrogenase DD548_01060 PF08240 Alcohol dehydrogenase GroES-like domain DD548_01065 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DD548_01070 PF00107 Zinc-binding dehydrogenase DD548_01070 PF08240 Alcohol dehydrogenase GroES-like domain DD548_01075 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DD548_01080 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DD548_01085 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DD548_01090 PF00107 Zinc-binding dehydrogenase DD548_01090 PF08240 Alcohol dehydrogenase GroES-like domain DD548_01095 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DD548_01100 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 DD548_01100 PF00535 Glycosyl transferase family 2 DD548_01105 PF01814 Hemerythrin HHE cation binding domain DD548_01105 PF04405 Domain of Unknown function (DUF542) DD548_01110 PF07694 5TMR of 5TMR-LYT DD548_01110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_01110 PF06580 Histidine kinase DD548_01115 PF04397 LytTr DNA-binding domain DD548_01115 PF00072 Response regulator receiver domain DD548_01120 PF03788 LrgA family DD548_01125 PF04172 LrgB-like family DD548_01130 PF00392 Bacterial regulatory proteins, gntR family DD548_01130 PF00155 Aminotransferase class I and II DD548_01140 PF02378 Phosphotransferase system, EIIC DD548_01140 PF00367 phosphotransferase system, EIIB DD548_01140 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DD548_01145 PF00232 Glycosyl hydrolase family 1 DD548_01155 PF13649 Methyltransferase domain DD548_01165 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DD548_01165 PF00294 pfkB family carbohydrate kinase DD548_01170 PF05025 RbsD / FucU transport protein family DD548_01175 PF06800 Sugar transport protein DD548_01180 PF00356 Bacterial regulatory proteins, lacI family DD548_01180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DD548_01200 PF07690 Major Facilitator Superfamily DD548_01205 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family DD548_01210 PF01551 Peptidase family M23 DD548_01215 PF00005 ABC transporter DD548_01245 PF01476 LysM domain DD548_01245 PF05257 CHAP domain DD548_01250 PF06013 Proteins of 100 residues with WXG DD548_01260 PF10661 WXG100 protein secretion system (Wss), protein EssA DD548_01265 PF08817 WXG100 protein secretion system (Wss), protein YukD DD548_01270 PF10140 WXG100 protein secretion system (Wss), protein YukC DD548_01275 PF12538 DNA transporter DD548_01275 PF01580 FtsK/SpoIIIE family DD548_01285 PF06013 Proteins of 100 residues with WXG DD548_01300 PF14449 Pre-toxin TG DD548_01395 PF05525 Branched-chain amino acid transport protein DD548_01405 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DD548_01415 PF02687 FtsX-like permease family DD548_01420 PF00005 ABC transporter DD548_01440 PF04227 Indigoidine synthase A like protein DD548_01445 PF07662 Na+ dependent nucleoside transporter C-terminus DD548_01445 PF01773 Na+ dependent nucleoside transporter N-terminus DD548_01450 PF00474 Sodium:solute symporter family DD548_01455 PF00701 Dihydrodipicolinate synthetase family DD548_01460 PF00480 ROK family DD548_01465 PF01380 SIS domain DD548_01465 PF01418 Helix-turn-helix domain, rpiR family DD548_01470 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DD548_01480 PF04650 YSIRK type signal peptide DD548_01490 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DD548_01500 PF00296 Luciferase-like monooxygenase DD548_01505 PF01597 Glycine cleavage H-protein DD548_01510 PF01661 Macro domain DD548_01520 PF10437 Bacterial lipoate protein ligase C-terminus DD548_01520 PF03099 Biotin/lipoate A/B protein ligase family DD548_01525 PF16363 GDP-mannose 4,6 dehydratase DD548_01530 PF03611 PTS system sugar-specific permease component DD548_01540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DD548_01545 PF00874 PRD domain DD548_01545 PF03123 CAT RNA binding domain DD548_01560 PF13610 DDE domain DD548_01585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DD548_01585 PF03466 LysR substrate binding domain DD548_01590 PF03601 Conserved hypothetical protein 698 DD548_01595 PF02796 Helix-turn-helix domain of resolvase DD548_01595 PF00239 Resolvase, N terminal domain DD548_01605 PF07732 Multicopper oxidase DD548_01605 PF07731 Multicopper oxidase DD548_01615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DD548_01615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DD548_01615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DD548_01615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DD548_01620 PF00293 NUDIX domain DD548_01630 PF04507 Csa1 family DD548_01635 PF04507 Csa1 family DD548_01660 PF04507 Csa1 family DD548_01685 PF00106 short chain dehydrogenase DD548_01710 PF02627 Carboxymuconolactone decarboxylase family DD548_01715 PF03806 AbgT putative transporter family DD548_01740 PF10100 Staphylopine dehydrogenase DD548_01745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DD548_01750 PF00528 Binding-protein-dependent transport system inner membrane component DD548_01755 PF12911 N-terminal TM domain of oligopeptide transport permease C DD548_01755 PF00528 Binding-protein-dependent transport system inner membrane component DD548_01760 PF00005 ABC transporter DD548_01765 PF00005 ABC transporter DD548_01770 PF07690 Major Facilitator Superfamily DD548_01780 PF01645 Conserved region in glutamate synthase DD548_01785 PF06998 Protein of unknown function (DUF1307) DD548_01800 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DD548_01805 PF05343 M42 glutamyl aminopeptidase DD548_01810 PF00005 ABC transporter DD548_01815 PF03649 Uncharacterised protein family (UPF0014) DD548_01820 PF07690 Major Facilitator Superfamily DD548_01825 PF00135 Carboxylesterase family DD548_01830 PF13520 Amino acid permease DD548_01840 PF08818 Domain of unknown function (DU1801) DD548_01855 PF00005 ABC transporter DD548_01855 PF00571 CBS domain DD548_01860 PF00528 Binding-protein-dependent transport system inner membrane component DD548_01865 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DD548_01870 PF00528 Binding-protein-dependent transport system inner membrane component DD548_01875 PF07690 Major Facilitator Superfamily DD548_01880 PF08546 Ketopantoate reductase PanE/ApbA C terminal DD548_01880 PF02558 Ketopantoate reductase PanE/ApbA DD548_01895 PF00144 Beta-lactamase DD548_01905 PF13520 Amino acid permease DD548_01915 PF00999 Sodium/hydrogen exchanger family DD548_01920 PF00324 Amino acid permease DD548_01940 PF07690 Major Facilitator Superfamily DD548_01970 PF04954 Siderophore-interacting protein DD548_01970 PF08021 Siderophore-interacting FAD-binding domain DD548_01970 PF00664 ABC transporter transmembrane region DD548_01970 PF00005 ABC transporter DD548_01975 PF00664 ABC transporter transmembrane region DD548_01975 PF00005 ABC transporter DD548_01995 PF00202 Aminotransferase class-III DD548_02000 PF06968 Biotin and Thiamin Synthesis associated domain DD548_02000 PF04055 Radical SAM superfamily DD548_02005 PF00155 Aminotransferase class I and II DD548_02010 PF03744 6-carboxyhexanoate--CoA ligase DD548_02020 PF07968 Leukocidin/Hemolysin toxin family DD548_02025 PF07968 Leukocidin/Hemolysin toxin family DD548_02030 PF07968 Leukocidin/Hemolysin toxin family DD548_02045 PF11621 C3 binding domain 4 of IgG-bind protein SBI DD548_02045 PF02216 B domain DD548_02055 PF01545 Cation efflux family DD548_02055 PF16916 Dimerisation domain of Zinc Transporter DD548_02060 PF00300 Histidine phosphatase superfamily (branch 1) DD548_02075 PF07690 Major Facilitator Superfamily DD548_02080 PF00497 Bacterial extracellular solute-binding proteins, family 3 DD548_02085 PF00528 Binding-protein-dependent transport system inner membrane component DD548_02090 PF00005 ABC transporter DD548_02095 PF02388 FemAB family DD548_02120 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DD548_02130 PF01297 Zinc-uptake complex component A periplasmic DD548_02130 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DD548_02145 PF01226 Formate/nitrite transporter DD548_02150 PF00583 Acetyltransferase (GNAT) family DD548_02160 PF04324 BFD-like [2Fe-2S] binding domain DD548_02160 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DD548_02160 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_02160 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DD548_02160 PF18267 Rubredoxin NAD+ reductase C-terminal domain DD548_02165 PF00355 Rieske [2Fe-2S] domain DD548_02170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DD548_02175 PF14710 Respiratory nitrate reductase alpha N-terminal DD548_02175 PF01568 Molydopterin dinucleotide binding domain DD548_02175 PF00384 Molybdopterin oxidoreductase DD548_02180 PF14711 Respiratory nitrate reductase beta C-terminal DD548_02180 PF13247 4Fe-4S dicluster domain DD548_02190 PF02665 Nitrate reductase gamma subunit DD548_02200 PF07730 Histidine kinase DD548_02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_02205 PF00072 Response regulator receiver domain DD548_02205 PF00196 Bacterial regulatory proteins, luxR family DD548_02210 PF13411 MerR HTH family regulatory protein DD548_02210 PF07739 TipAS antibiotic-recognition domain DD548_02220 PF07690 Major Facilitator Superfamily DD548_02225 PF00011 Hsp20/alpha crystallin family DD548_02230 PF01047 MarR family DD548_02240 PF00375 Sodium:dicarboxylate symporter family DD548_02250 PF16242 Pyridoxamine 5'-phosphate oxidase like DD548_02265 PF02378 Phosphotransferase system, EIIC DD548_02265 PF00367 phosphotransferase system, EIIB DD548_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_02305 PF00583 Acetyltransferase (GNAT) family DD548_02310 PF08240 Alcohol dehydrogenase GroES-like domain DD548_02310 PF00107 Zinc-binding dehydrogenase DD548_02315 PF13673 Acetyltransferase (GNAT) domain DD548_02325 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DD548_02330 PF02652 L-lactate permease DD548_02335 PF06039 Malate:quinone oxidoreductase (Mqo) DD548_02345 PF04397 LytTr DNA-binding domain DD548_02350 PF00512 His Kinase A (phospho-acceptor) domain DD548_02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_02350 PF00672 HAMP domain DD548_02355 PF00072 Response regulator receiver domain DD548_02355 PF00486 Transcriptional regulatory protein, C terminal DD548_02360 PF02687 FtsX-like permease family DD548_02365 PF00005 ABC transporter DD548_02380 PF12802 MarR family DD548_02400 PF07690 Major Facilitator Superfamily DD548_02415 PF07690 Major Facilitator Superfamily DD548_02425 PF00934 PE family DD548_02425 PF07859 alpha/beta hydrolase fold DD548_02440 PF01544 CorA-like Mg2+ transporter protein DD548_02445 PF01070 FMN-dependent dehydrogenase DD548_02450 PF03616 Sodium/glutamate symporter DD548_02460 PF02245 Methylpurine-DNA glycosylase (MPG) DD548_02465 PF05656 Protein of unknown function (DUF805) DD548_02470 PF00005 ABC transporter DD548_02470 PF13732 Domain of unknown function (DUF4162) DD548_02485 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DD548_02495 PF03473 MOSC domain DD548_02495 PF03475 3-alpha domain DD548_02500 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DD548_02510 PF00491 Arginase family DD548_02515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DD548_02520 PF03466 LysR substrate binding domain DD548_02520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DD548_02525 PF17392 Urocanase C-terminal domain DD548_02525 PF01175 Urocanase Rossmann-like domain DD548_02525 PF17391 Urocanase N-terminal domain DD548_02530 PF01979 Amidohydrolase family DD548_02535 PF01546 Peptidase family M20/M25/M40 DD548_02535 PF07687 Peptidase dimerisation domain DD548_02560 PF01418 Helix-turn-helix domain, rpiR family DD548_02560 PF01380 SIS domain DD548_02565 PF02378 Phosphotransferase system, EIIC DD548_02565 PF00367 phosphotransferase system, EIIB DD548_02575 PF01758 Sodium Bile acid symporter family DD548_02580 PF13419 Haloacid dehalogenase-like hydrolase DD548_02600 PF00324 Amino acid permease DD548_02615 PF02517 CPBP intramembrane metalloprotease DD548_02635 PF03816 Cell envelope-related transcriptional attenuator domain DD548_02640 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DD548_02640 PF12838 4Fe-4S dicluster domain DD548_02640 PF00384 Molybdopterin oxidoreductase DD548_02640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DD548_02640 PF01568 Molydopterin dinucleotide binding domain DD548_02655 PF13457 GW (Gly-Tryp) dipeptide domain DD548_02655 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DD548_02660 PF01494 FAD binding domain DD548_02665 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_02665 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_02675 PF05257 CHAP domain DD548_02685 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain DD548_02685 PF02558 Ketopantoate reductase PanE/ApbA DD548_02690 PF03553 Na+/H+ antiporter family DD548_02700 PF05257 CHAP domain DD548_02730 PF01774 UreD urease accessory protein DD548_02735 PF02492 CobW/HypB/UreG, nucleotide-binding domain DD548_02740 PF01730 UreF DD548_02745 PF02814 UreE urease accessory protein, N-terminal domain DD548_02745 PF05194 UreE urease accessory protein, C-terminal domain DD548_02755 PF00699 Urease beta subunit DD548_02760 PF00547 Urease, gamma subunit DD548_02765 PF03253 Urea transporter DD548_02770 PF02770 Acyl-CoA dehydrogenase, middle domain DD548_02770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DD548_02770 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DD548_02785 PF01156 Inosine-uridine preferring nucleoside hydrolase DD548_02790 PF02632 BioY family DD548_02800 PF02634 FdhD/NarQ family DD548_02810 PF00528 Binding-protein-dependent transport system inner membrane component DD548_02815 PF00005 ABC transporter DD548_02815 PF03459 TOBE domain DD548_02820 PF00899 ThiF family DD548_02825 PF00994 Probable molybdopterin binding domain DD548_02830 PF01967 MoaC family DD548_02835 PF00994 Probable molybdopterin binding domain DD548_02835 PF03454 MoeA C-terminal region (domain IV) DD548_02835 PF03453 MoeA N-terminal region (domain I and II) DD548_02840 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DD548_02845 PF02391 MoaE protein DD548_02850 PF02597 ThiS family DD548_02855 PF12804 MobA-like NTP transferase domain DD548_02860 PF04055 Radical SAM superfamily DD548_02860 PF06463 Molybdenum Cofactor Synthesis C DD548_02875 PF01047 MarR family DD548_02885 PF01047 MarR family DD548_02900 PF02388 FemAB family DD548_02905 PF00873 AcrB/AcrD/AcrF family DD548_02930 PF06800 Sugar transport protein DD548_02945 PF01751 Toprim domain DD548_02945 PF01131 DNA topoisomerase DD548_02950 PF00860 Permease family DD548_02960 PF00338 Ribosomal protein S10p/S20e DD548_02965 PF00297 Ribosomal protein L3 DD548_02970 PF00573 Ribosomal protein L4/L1 family DD548_02975 PF00276 Ribosomal protein L23 DD548_02980 PF00181 Ribosomal Proteins L2, RNA binding domain DD548_02980 PF03947 Ribosomal Proteins L2, C-terminal domain DD548_02985 PF00203 Ribosomal protein S19 DD548_02990 PF00237 Ribosomal protein L22p/L17e DD548_02995 PF07650 KH domain DD548_02995 PF00189 Ribosomal protein S3, C-terminal domain DD548_03000 PF00252 Ribosomal protein L16p/L10e DD548_03005 PF00831 Ribosomal L29 protein DD548_03010 PF00366 Ribosomal protein S17 DD548_03015 PF00238 Ribosomal protein L14p/L23e DD548_03020 PF00467 KOW motif DD548_03020 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DD548_03025 PF00281 Ribosomal protein L5 DD548_03025 PF00673 ribosomal L5P family C-terminus DD548_03030 PF00253 Ribosomal protein S14p/S29e DD548_03035 PF00410 Ribosomal protein S8 DD548_03040 PF00347 Ribosomal protein L6 DD548_03045 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DD548_03050 PF00333 Ribosomal protein S5, N-terminal domain DD548_03050 PF03719 Ribosomal protein S5, C-terminal domain DD548_03055 PF00327 Ribosomal protein L30p/L7e DD548_03060 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DD548_03065 PF00344 SecY translocase DD548_03070 PF05191 Adenylate kinase, active site lid DD548_03075 PF01176 Translation initiation factor 1A / IF-1 DD548_03080 PF00444 Ribosomal protein L36 DD548_03085 PF00416 Ribosomal protein S13/S18 DD548_03090 PF00411 Ribosomal protein S11 DD548_03095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DD548_03095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DD548_03095 PF01000 RNA polymerase Rpb3/RpoA insert domain DD548_03100 PF01196 Ribosomal protein L17 DD548_03105 PF00005 ABC transporter DD548_03110 PF00005 ABC transporter DD548_03115 PF02361 Cobalt transport protein DD548_03120 PF01416 tRNA pseudouridine synthase DD548_03125 PF00572 Ribosomal protein L13 DD548_03130 PF00380 Ribosomal protein S9/S16 DD548_03150 PF10431 C-terminal, D2-small domain, of ClpB protein DD548_03150 PF17871 AAA lid domain DD548_03150 PF07724 AAA domain (Cdc48 subfamily) DD548_03150 PF00004 ATPase family associated with various cellular activities (AAA) DD548_03150 PF02861 Clp amino terminal domain, pathogenicity island component DD548_03170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DD548_03170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DD548_03170 PF00205 Thiamine pyrophosphate enzyme, central domain DD548_03175 PF03306 Alpha-acetolactate decarboxylase DD548_03185 PF05116 Sucrose-6F-phosphate phosphohydrolase DD548_03195 PF02278 Polysaccharide lyase family 8, super-sandwich domain DD548_03195 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DD548_03195 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DD548_03205 PF13411 MerR HTH family regulatory protein DD548_03210 PF00248 Aldo/keto reductase family DD548_03230 PF02146 Sir2 family DD548_03235 PF08220 DeoR-like helix-turn-helix domain DD548_03235 PF00455 DeoR C terminal sensor domain DD548_03240 PF02502 Ribose/Galactose Isomerase DD548_03245 PF02502 Ribose/Galactose Isomerase DD548_03250 PF00294 pfkB family carbohydrate kinase DD548_03255 PF01791 DeoC/LacD family aldolase DD548_03260 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DD548_03265 PF02378 Phosphotransferase system, EIIC DD548_03265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DD548_03270 PF00232 Glycosyl hydrolase family 1 DD548_03280 PF16884 N-terminal domain of oxidoreductase DD548_03280 PF00107 Zinc-binding dehydrogenase DD548_03285 PF08240 Alcohol dehydrogenase GroES-like domain DD548_03285 PF00107 Zinc-binding dehydrogenase DD548_03290 PF02028 BCCT, betaine/carnitine/choline family transporter DD548_03305 PF03780 Asp23 family, cell envelope-related function DD548_03320 PF05977 Transmembrane secretion effector DD548_03325 PF04183 IucA / IucC family DD548_03325 PF06276 Ferric iron reductase FhuF-like transporter DD548_03330 PF01168 Alanine racemase, N-terminal domain DD548_03340 PF01497 Periplasmic binding protein DD548_03345 PF01032 FecCD transport family DD548_03350 PF01032 FecCD transport family DD548_03365 PF04307 LexA-binding, inner membrane-associated putative hydrolase DD548_03370 PF01704 UTP--glucose-1-phosphate uridylyltransferase DD548_03375 PF03006 Haemolysin-III related DD548_03380 PF07690 Major Facilitator Superfamily DD548_03385 PF17080 Multidrug Resistance efflux pump DD548_03390 PF07690 Major Facilitator Superfamily DD548_03395 PF10609 NUBPL iron-transfer P-loop NTPase DD548_03465 PF00491 Arginase family DD548_03470 PF02457 DisA bacterial checkpoint controller nucleotide-binding DD548_03480 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DD548_03480 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DD548_03480 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DD548_03480 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DD548_03485 PF01468 GA module DD548_03485 PF07564 Domain of Unknown Function (DUF1542) DD548_03490 PF01232 Mannitol dehydrogenase Rossmann domain DD548_03490 PF08125 Mannitol dehydrogenase C-terminal domain DD548_03495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DD548_03500 PF00874 PRD domain DD548_03500 PF08279 HTH domain DD548_03500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DD548_03500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DD548_03500 PF05043 Mga helix-turn-helix domain DD548_03505 PF02378 Phosphotransferase system, EIIC DD548_03505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DD548_03510 PF01380 SIS domain DD548_03515 PF00005 ABC transporter DD548_03535 PF02796 Helix-turn-helix domain of resolvase DD548_03535 PF00239 Resolvase, N terminal domain DD548_03555 PF16916 Dimerisation domain of Zinc Transporter DD548_03555 PF01545 Cation efflux family DD548_03560 PF01022 Bacterial regulatory protein, arsR family DD548_03565 PF13460 NAD(P)H-binding DD548_03570 PF01238 Phosphomannose isomerase type I DD548_03590 PF00210 Ferritin-like domain DD548_03595 PF01048 Phosphorylase superfamily DD548_03600 PF01791 DeoC/LacD family aldolase DD548_03610 PF02885 Glycosyl transferase family, helical bundle domain DD548_03610 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DD548_03610 PF00591 Glycosyl transferase family, a/b domain DD548_03620 PF02664 S-Ribosylhomocysteinase (LuxS) DD548_03640 PF03630 Fumble DD548_03650 PF05066 HB1, ASXL, restriction endonuclease HTH domain DD548_03655 PF06418 CTP synthase N-terminus DD548_03655 PF00117 Glutamine amidotransferase class-I DD548_03665 PF01116 Fructose-bisphosphate aldolase class-II DD548_03670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DD548_03680 PF00171 Aldehyde dehydrogenase family DD548_03685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DD548_03685 PF07498 Rho termination factor, N-terminal domain DD548_03685 PF07497 Rho termination factor, RNA-binding domain DD548_03690 PF01197 Ribosomal protein L31 DD548_03700 PF00265 Thymidine kinase DD548_03705 PF00472 RF-1 domain DD548_03705 PF03462 PCRF domain DD548_03710 PF17827 PrmC N-terminal domain DD548_03710 PF05175 Methyltransferase small domain DD548_03715 PF03481 Putative GTP-binding controlling metal-binding DD548_03715 PF01300 Telomere recombination DD548_03720 PF01451 Low molecular weight phosphotyrosine protein phosphatase DD548_03725 PF04260 Protein of unknown function (DUF436) DD548_03730 PF00464 Serine hydroxymethyltransferase DD548_03740 PF02350 UDP-N-acetylglucosamine 2-epimerase DD548_03750 PF00119 ATP synthase A chain DD548_03755 PF00137 ATP synthase subunit C DD548_03760 PF00430 ATP synthase B/B' CF(0) DD548_03765 PF00213 ATP synthase delta (OSCP) subunit DD548_03770 PF02874 ATP synthase alpha/beta family, beta-barrel domain DD548_03770 PF00306 ATP synthase alpha/beta chain, C terminal domain DD548_03770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DD548_03775 PF00231 ATP synthase DD548_03780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DD548_03780 PF02874 ATP synthase alpha/beta family, beta-barrel domain DD548_03785 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DD548_03785 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DD548_03800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DD548_03805 PF07977 FabA-like domain DD548_03815 PF00436 Single-strand binding protein family DD548_03820 PF06737 Transglycosylase-like domain DD548_03825 PF03070 TENA/THI-4/PQQC family DD548_03830 PF08543 Phosphomethylpyrimidine kinase DD548_03835 PF02110 Hydroxyethylthiazole kinase family DD548_03840 PF02581 Thiamine monophosphate synthase DD548_03845 PF02096 60Kd inner membrane protein DD548_03865 PF01966 HD domain DD548_03870 PF13396 Phospholipase_D-nuclease N-terminal DD548_03870 PF13091 PLD-like domain DD548_03875 PF02583 Metal-sensitive transcriptional repressor DD548_03890 PF01098 Cell cycle protein DD548_03895 PF07478 D-ala D-ala ligase C-terminus DD548_03895 PF01820 D-ala D-ala ligase N-terminus DD548_03900 PF02875 Mur ligase family, glutamate ligase domain DD548_03900 PF08245 Mur ligase middle domain DD548_03900 PF01225 Mur ligase family, catalytic domain DD548_03905 PF00271 Helicase conserved C-terminal domain DD548_03905 PF00270 DEAD/DEAH box helicase DD548_03910 PF00486 Transcriptional regulatory protein, C terminal DD548_03910 PF00072 Response regulator receiver domain DD548_03915 PF00512 His Kinase A (phospho-acceptor) domain DD548_03915 PF13493 Domain of unknown function (DUF4118) DD548_03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_03915 PF02702 Osmosensitive K+ channel His kinase sensor domain DD548_03925 PF03814 Potassium-transporting ATPase A subunit DD548_03935 PF02669 K+-transporting ATPase, c chain DD548_03945 PF03703 Bacterial PH domain DD548_03955 PF01648 4'-phosphopantetheinyl transferase superfamily DD548_03960 PF00842 Alanine racemase, C-terminal domain DD548_03960 PF01168 Alanine racemase, N-terminal domain DD548_03970 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DD548_03980 PF07228 Stage II sporulation protein E (SpoIIE) DD548_03980 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain DD548_03985 PF01740 STAS domain DD548_03990 PF13581 Histidine kinase-like ATPase domain DD548_03995 PF04545 Sigma-70, region 4 DD548_03995 PF04542 Sigma-70 region 2 DD548_03995 PF04539 Sigma-70 region 3 DD548_04000 PF17674 HHH domain DD548_04000 PF00575 S1 RNA binding domain DD548_04000 PF09371 Tex-like protein N-terminal domain DD548_04000 PF16921 Tex protein YqgF-like domain DD548_04005 PF10263 SprT-like family DD548_04005 PF17283 SprT-like zinc ribbon domain DD548_04040 PF00291 Pyridoxal-phosphate dependent enzyme DD548_04040 PF00585 C-terminal regulatory domain of Threonine dehydratase DD548_04045 PF00694 Aconitase C-terminal domain DD548_04050 PF00330 Aconitase family (aconitate hydratase) DD548_04055 PF00180 Isocitrate/isopropylmalate dehydrogenase DD548_04060 PF00682 HMGL-like DD548_04060 PF08502 LeuA allosteric (dimerisation) domain DD548_04065 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DD548_04065 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DD548_04075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DD548_04075 PF00205 Thiamine pyrophosphate enzyme, central domain DD548_04075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DD548_04080 PF00920 Dehydratase family DD548_04090 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DD548_04095 PF00814 Glycoprotease family DD548_04100 PF00583 Acetyltransferase (GNAT) family DD548_04105 PF00814 Glycoprotease family DD548_04110 PF05192 MutS domain III DD548_04110 PF05190 MutS family domain IV DD548_04110 PF05188 MutS domain II DD548_04110 PF01624 MutS domain I DD548_04110 PF00488 MutS domain V DD548_04120 PF00005 ABC transporter DD548_04120 PF12848 ABC transporter DD548_04120 PF16326 ABC transporter C-terminal domain DD548_04125 PF06971 Putative DNA-binding protein N-terminus DD548_04125 PF02629 CoA binding domain DD548_04130 PF04143 Sulphur transport DD548_04135 PF01206 Sulfurtransferase TusA DD548_04140 PF00909 Ammonium Transporter Family DD548_04145 PF13407 Periplasmic binding protein domain DD548_04145 PF00356 Bacterial regulatory proteins, lacI family DD548_04150 PF00251 Glycosyl hydrolases family 32 N-terminal domain DD548_04150 PF08244 Glycosyl hydrolases family 32 C terminal DD548_04155 PF00294 pfkB family carbohydrate kinase DD548_04165 PF00072 Response regulator receiver domain DD548_04165 PF04397 LytTr DNA-binding domain DD548_04180 PF04647 Accessory gene regulator B DD548_04185 PF05372 Delta lysin family DD548_04190 PF00795 Carbon-nitrogen hydrolase DD548_04205 PF02517 CPBP intramembrane metalloprotease DD548_04210 PF00166 Chaperonin 10 Kd subunit DD548_04215 PF00118 TCP-1/cpn60 chaperonin family DD548_04220 PF00589 Phage integrase family DD548_04220 PF14659 Phage integrase, N-terminal SAM-like domain DD548_04305 PF10668 Phage terminase small subunit DD548_04305 PF03592 Terminase small subunit DD548_04335 PF02386 Cation transport protein DD548_04340 PF01497 Periplasmic binding protein DD548_04345 PF04072 Leucine carboxyl methyltransferase DD548_04350 PF07687 Peptidase dimerisation domain DD548_04350 PF01546 Peptidase family M20/M25/M40 DD548_04355 PF07968 Leukocidin/Hemolysin toxin family DD548_04360 PF07968 Leukocidin/Hemolysin toxin family DD548_04395 PF00717 Peptidase S24-like DD548_04395 PF01726 LexA DNA binding domain DD548_04470 PF01695 IstB-like ATP binding protein DD548_04585 PF04860 Phage portal protein DD548_04640 PF04225 Opacity-associated protein A LysM-like domain DD548_04640 PF01551 Peptidase family M23 DD548_04685 PF05257 CHAP domain DD548_04685 PF08460 Bacterial SH3 domain DD548_04685 PF01510 N-acetylmuramoyl-L-alanine amidase DD548_04690 PF02821 Staphylokinase/Streptokinase family DD548_04705 PF05257 CHAP domain DD548_04705 PF01520 N-acetylmuramoyl-L-alanine amidase DD548_04705 PF08460 Bacterial SH3 domain DD548_04710 PF11546 Staphylococcal complement inhibitor SCIN DD548_04730 PF03372 Endonuclease/Exonuclease/phosphatase family DD548_04735 PF03642 MAP domain DD548_04755 PF00392 Bacterial regulatory proteins, gntR family DD548_04760 PF00005 ABC transporter DD548_04770 PF00005 ABC transporter DD548_04820 PF00589 Phage integrase family DD548_04820 PF02899 Phage integrase, N-terminal SAM-like domain DD548_04825 PF02899 Phage integrase, N-terminal SAM-like domain DD548_04825 PF00589 Phage integrase family DD548_04840 PF08863 YolD-like protein DD548_04845 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DD548_04850 PF00905 Penicillin binding protein transpeptidase domain DD548_04850 PF05569 BlaR1 peptidase M56 DD548_04855 PF03965 Penicillinase repressor DD548_04860 PF10282 Lactonase, 7-bladed beta-propeller DD548_04865 PF00171 Aldehyde dehydrogenase family DD548_04875 PF01368 DHH family DD548_04875 PF02833 DHHA2 domain DD548_04880 PF00857 Isochorismatase family DD548_04890 PF00939 Sodium:sulfate symporter transmembrane region DD548_04900 PF01842 ACT domain DD548_04900 PF00800 Prephenate dehydratase DD548_04905 PF02898 Nitric oxide synthase, oxygenase domain DD548_04910 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DD548_04910 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DD548_04910 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DD548_04915 PF02540 NAD synthase DD548_04920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DD548_04925 PF14044 NETI protein DD548_04935 PF14731 Staphopain proregion DD548_04935 PF05543 Staphopain peptidase C47 DD548_04945 PF10397 Adenylosuccinate lyase C-terminus DD548_04945 PF00206 Lyase DD548_04950 PF01371 Trp repressor protein DD548_04955 PF01884 PcrB family DD548_04960 PF13361 UvrD-like helicase C-terminal domain DD548_04960 PF00580 UvrD/REP helicase N-terminal domain DD548_04965 PF03120 NAD-dependent DNA ligase OB-fold domain DD548_04965 PF00533 BRCA1 C Terminus (BRCT) domain DD548_04965 PF01653 NAD-dependent DNA ligase adenylation domain DD548_04965 PF12826 Helix-hairpin-helix motif DD548_04965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DD548_04970 PF07537 CamS sex pheromone cAM373 precursor DD548_04975 PF00474 Sodium:solute symporter family DD548_04980 PF02686 Glu-tRNAGln amidotransferase C subunit DD548_04985 PF01425 Amidase DD548_04990 PF02934 GatB/GatE catalytic domain DD548_04990 PF02637 GatB domain DD548_05005 PF00781 Diacylglycerol kinase catalytic domain DD548_05010 PF05958 tRNA (Uracil-5-)-methyltransferase DD548_05020 PF11799 impB/mucB/samB family C-terminal domain DD548_05020 PF00817 impB/mucB/samB family DD548_05035 PF00210 Ferritin-like domain DD548_05040 PF08353 Domain of unknown function (DUF1727) DD548_05040 PF08245 Mur ligase middle domain DD548_05045 PF07685 CobB/CobQ-like glutamine amidotransferase domain DD548_05065 PF06081 Aromatic acid exporter family member 1 DD548_05080 PF00557 Metallopeptidase family M24 DD548_05095 PF07730 Histidine kinase DD548_05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_05100 PF00196 Bacterial regulatory proteins, luxR family DD548_05100 PF00072 Response regulator receiver domain DD548_05105 PF03631 Virulence factor BrkB DD548_05115 PF01451 Low molecular weight phosphotyrosine protein phosphatase DD548_05120 PF06569 Protein of unknown function (DUF1128) DD548_05125 PF02073 Thermophilic metalloprotease (M29) DD548_05130 PF03061 Thioesterase superfamily DD548_05135 PF08756 YfkB-like domain DD548_05135 PF04055 Radical SAM superfamily DD548_05140 PF02899 Phage integrase, N-terminal SAM-like domain DD548_05140 PF00589 Phage integrase family DD548_05225 PF01695 IstB-like ATP binding protein DD548_05275 PF00692 dUTPase DD548_05420 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DD548_05420 PF13457 GW (Gly-Tryp) dipeptide domain DD548_05440 PF01510 N-acetylmuramoyl-L-alanine amidase DD548_05440 PF05257 CHAP domain DD548_05440 PF08460 Bacterial SH3 domain DD548_05460 PF01965 DJ-1/PfpI family DD548_05465 PF00912 Transglycosylase DD548_05470 PF02631 RecX family DD548_05480 PF00005 ABC transporter DD548_05480 PF01476 LysM domain DD548_05495 PF04307 LexA-binding, inner membrane-associated putative hydrolase DD548_05500 PF00730 HhH-GPD superfamily base excision DNA repair protein DD548_05500 PF14815 NUDIX domain DD548_05500 PF00633 Helix-hairpin-helix motif DD548_05505 PF04167 Protein of unknown function (DUF402) DD548_05510 PF00664 ABC transporter transmembrane region DD548_05510 PF00005 ABC transporter DD548_05520 PF06081 Aromatic acid exporter family member 1 DD548_05525 PF00202 Aminotransferase class-III DD548_05530 PF00578 AhpC/TSA family DD548_05535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_05535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_05540 PF01475 Ferric uptake regulator family DD548_05710 PF00528 Binding-protein-dependent transport system inner membrane component DD548_05715 PF00005 ABC transporter DD548_05720 PF08331 Domain of unknown function (DUF1730) DD548_05725 PF00588 SpoU rRNA Methylase family DD548_05755 PF10415 Fumarase C C-terminus DD548_05755 PF00206 Lyase DD548_05760 PF00849 RNA pseudouridylate synthase DD548_05760 PF01479 S4 domain DD548_05765 PF07730 Histidine kinase DD548_05765 PF13185 GAF domain DD548_05770 PF00072 Response regulator receiver domain DD548_05770 PF00196 Bacterial regulatory proteins, luxR family DD548_05780 PF04286 Protein of unknown function (DUF445) DD548_05785 PF06133 Control of competence regulator ComK, YlbF/YmcA DD548_05800 PF00149 Calcineurin-like phosphoesterase DD548_05810 PF01966 HD domain DD548_05815 PF00639 PPIC-type PPIASE domain DD548_05835 PF01230 HIT domain DD548_05840 PF00005 ABC transporter DD548_05860 PF01208 Uroporphyrinogen decarboxylase (URO-D) DD548_05945 PF07968 Leukocidin/Hemolysin toxin family DD548_05950 PF07968 Leukocidin/Hemolysin toxin family DD548_05965 PF02052 Gallidermin DD548_05970 PF14028 Lantibiotic biosynthesis dehydratase C-term DD548_05970 PF04738 Lantibiotic dehydratase, N terminus DD548_05975 PF05147 Lanthionine synthetase C-like protein DD548_05980 PF02441 Flavoprotein DD548_05985 PF00082 Subtilase family DD548_05990 PF00005 ABC transporter DD548_06015 PF00089 Trypsin DD548_06020 PF00089 Trypsin DD548_06025 PF00089 Trypsin DD548_06040 PF00089 Trypsin DD548_06055 PF02384 N-6 DNA Methylase DD548_06055 PF12161 HsdM N-terminal domain DD548_06155 PF00501 AMP-binding enzyme DD548_06155 PF13193 AMP-binding enzyme C-terminal domain DD548_06165 PF01809 Putative membrane protein insertion efficiency factor DD548_06175 PF00326 Prolyl oligopeptidase family DD548_06180 PF01797 Transposase IS200 like DD548_06185 PF01293 Phosphoenolpyruvate carboxykinase DD548_06190 PF00438 S-adenosylmethionine synthetase, N-terminal domain DD548_06190 PF02773 S-adenosylmethionine synthetase, C-terminal domain DD548_06190 PF02772 S-adenosylmethionine synthetase, central domain DD548_06200 PF00248 Aldo/keto reductase family DD548_06210 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DD548_06215 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DD548_06225 PF00923 Transaldolase/Fructose-6-phosphate aldolase DD548_06245 PF04542 Sigma-70 region 2 DD548_06245 PF00196 Bacterial regulatory proteins, luxR family DD548_06255 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DD548_06255 PF13457 GW (Gly-Tryp) dipeptide domain DD548_06260 PF01451 Low molecular weight phosphotyrosine protein phosphatase DD548_06265 PF02040 Arsenical pump membrane protein DD548_06270 PF01022 Bacterial regulatory protein, arsR family DD548_06280 PF01872 RibD C-terminal domain DD548_06280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DD548_06285 PF00677 Lumazine binding domain DD548_06290 PF00925 GTP cyclohydrolase II DD548_06290 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DD548_06295 PF00885 6,7-dimethyl-8-ribityllumazine synthase DD548_06300 PF01619 Proline dehydrogenase DD548_06315 PF12146 Serine aminopeptidase, S33 DD548_06325 PF01047 MarR family DD548_06330 PF06962 Putative rRNA methylase DD548_06335 PF04055 Radical SAM superfamily DD548_06335 PF16199 Radical_SAM C-terminal domain DD548_06340 PF07690 Major Facilitator Superfamily DD548_06345 PF08264 Anticodon-binding domain of tRNA DD548_06345 PF13603 Leucyl-tRNA synthetase, Domain 2 DD548_06345 PF09334 tRNA synthetases class I (M) DD548_06345 PF00133 tRNA synthetases class I (I, L, M and V) DD548_06355 PF07564 Domain of Unknown Function (DUF1542) DD548_06355 PF01468 GA module DD548_06355 PF04650 YSIRK type signal peptide DD548_06365 PF01943 Polysaccharide biosynthesis protein DD548_06365 PF14667 Polysaccharide biosynthesis C-terminal domain DD548_06370 PF00849 RNA pseudouridylate synthase DD548_06370 PF01479 S4 domain DD548_06385 PF01546 Peptidase family M20/M25/M40 DD548_06390 PF01063 Amino-transferase class IV DD548_06395 PF01636 Phosphotransferase enzyme family DD548_06400 PF02390 Putative methyltransferase DD548_06405 PF00753 Metallo-beta-lactamase superfamily DD548_06415 PF05343 M42 glutamyl aminopeptidase DD548_06420 PF00085 Thioredoxin DD548_06425 PF07285 Protein of unknown function (DUF1444) DD548_06430 PF14794 Domain of unknown function (DUF4479) DD548_06430 PF01588 Putative tRNA binding domain DD548_06435 PF09397 Ftsk gamma domain DD548_06435 PF17854 FtsK alpha domain DD548_06435 PF01580 FtsK/SpoIIIE family DD548_06440 PF01225 Mur ligase family, catalytic domain DD548_06440 PF02875 Mur ligase family, glutamate ligase domain DD548_06440 PF08245 Mur ligase middle domain DD548_06445 PF06103 Bacterial protein of unknown function (DUF948) DD548_06460 PF01817 Chorismate mutase type II DD548_06460 PF00793 DAHP synthetase I family DD548_06470 PF00356 Bacterial regulatory proteins, lacI family DD548_06475 PF00850 Histone deacetylase domain DD548_06480 PF00583 Acetyltransferase (GNAT) family DD548_06485 PF00501 AMP-binding enzyme DD548_06485 PF13193 AMP-binding enzyme C-terminal domain DD548_06490 PF01268 Formate--tetrahydrofolate ligase DD548_06500 PF04650 YSIRK type signal peptide DD548_06500 PF05031 Iron Transport-associated domain DD548_06510 PF00912 Transglycosylase DD548_06510 PF00905 Penicillin binding protein transpeptidase domain DD548_06515 PF00579 tRNA synthetases class I (W and Y) DD548_06515 PF01479 S4 domain DD548_06520 PF13180 PDZ domain DD548_06525 PF01553 Acyltransferase DD548_06530 PF02378 Phosphotransferase system, EIIC DD548_06530 PF00367 phosphotransferase system, EIIB DD548_06545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_06545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_06545 PF01842 ACT domain DD548_06550 PF00266 Aminotransferase class-V DD548_06555 PF02566 OsmC-like protein DD548_06560 PF03009 Glycerophosphoryl diester phosphodiesterase family DD548_06570 PF00163 Ribosomal protein S4/S9 N-terminal domain DD548_06570 PF01479 S4 domain DD548_06580 PF13185 GAF domain DD548_06585 PF06160 Septation ring formation regulator, EzrA DD548_06595 PF00266 Aminotransferase class-V DD548_06600 PF02926 THUMP domain DD548_06600 PF02568 Thiamine biosynthesis protein (ThiI) DD548_06605 PF01925 Sulfite exporter TauE/SafE DD548_06610 PF08534 Redoxin DD548_06615 PF02384 N-6 DNA Methylase DD548_06620 PF00871 Acetokinase family DD548_06625 PF00582 Universal stress protein family DD548_06630 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DD548_06630 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DD548_06640 PF01321 Creatinase/Prolidase N-terminal domain DD548_06640 PF00557 Metallopeptidase family M24 DD548_06655 PF03061 Thioesterase superfamily DD548_06655 PF00571 CBS domain DD548_06655 PF07085 DRTGG domain DD548_06655 PF00392 Bacterial regulatory proteins, gntR family DD548_06665 PF02272 DHHA1 domain DD548_06665 PF01368 DHH family DD548_06670 PF07733 Bacterial DNA polymerase III alpha NTPase domain DD548_06670 PF01336 OB-fold nucleic acid binding domain DD548_06670 PF02811 PHP domain DD548_06670 PF14579 Helix-hairpin-helix motif DD548_06670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DD548_06675 PF00390 Malic enzyme, N-terminal domain DD548_06675 PF03949 Malic enzyme, NAD binding domain DD548_06680 PF17848 Acetyl-coA carboxylase zinc finger domain DD548_06680 PF01039 Carboxyl transferase domain DD548_06685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DD548_06690 PF00365 Phosphofructokinase DD548_06695 PF02887 Pyruvate kinase, alpha/beta domain DD548_06695 PF00224 Pyruvate kinase, barrel domain DD548_06695 PF00391 PEP-utilising enzyme, mobile domain DD548_06705 PF00324 Amino acid permease DD548_06710 PF00285 Citrate synthase, C-terminal domain DD548_06715 PF00180 Isocitrate/isopropylmalate dehydrogenase DD548_06725 PF00072 Response regulator receiver domain DD548_06725 PF00486 Transcriptional regulatory protein, C terminal DD548_06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_06730 PF00512 His Kinase A (phospho-acceptor) domain DD548_06730 PF00989 PAS fold DD548_06730 PF16736 Single Cache-like DD548_06740 PF00476 DNA polymerase family A DD548_06740 PF01367 5'-3' exonuclease, C-terminal SAM fold DD548_06740 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DD548_06745 PF06827 Zinc finger found in FPG and IleRS DD548_06745 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DD548_06745 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DD548_06750 PF01121 Dephospho-CoA kinase DD548_06755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DD548_06755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DD548_06760 PF03477 ATP cone domain DD548_06770 PF01695 IstB-like ATP binding protein DD548_06770 PF07319 Primosomal protein DnaI N-terminus DD548_06780 PF02824 TGS domain DD548_06780 PF03129 Anticodon binding domain DD548_06780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DD548_06780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DD548_06785 PF00324 Amino acid permease DD548_06790 PF05198 Translation initiation factor IF-3, N-terminal domain DD548_06790 PF00707 Translation initiation factor IF-3, C-terminal domain DD548_06795 PF01632 Ribosomal protein L35 DD548_06800 PF00453 Ribosomal protein L20 DD548_06825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DD548_06825 PF05697 Bacterial trigger factor protein (TF) DD548_06825 PF05698 Bacterial trigger factor protein (TF) C-terminus DD548_06830 PF06689 ClpX C4-type zinc finger DD548_06830 PF10431 C-terminal, D2-small domain, of ClpB protein DD548_06830 PF07724 AAA domain (Cdc48 subfamily) DD548_06835 PF01926 50S ribosome-binding GTPase DD548_06840 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DD548_06840 PF01488 Shikimate / quinate 5-dehydrogenase DD548_06840 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DD548_06845 PF01578 Cytochrome C assembly protein DD548_06850 PF03900 Porphobilinogen deaminase, C-terminal domain DD548_06850 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DD548_06860 PF00490 Delta-aminolevulinic acid dehydratase DD548_06865 PF00202 Aminotransferase class-III DD548_06880 PF03352 Methyladenine glycosylase DD548_06885 PF00133 tRNA synthetases class I (I, L, M and V) DD548_06885 PF08264 Anticodon-binding domain of tRNA DD548_06885 PF10458 Valyl tRNA synthetase tRNA binding arm DD548_06890 PF02875 Mur ligase family, glutamate ligase domain DD548_06890 PF08245 Mur ligase middle domain DD548_06900 PF06750 Bacterial Peptidase A24 N-terminal domain DD548_06900 PF01478 Type IV leader peptidase family DD548_06905 PF04002 RadC-like JAB domain DD548_06940 PF00829 Ribosomal prokaryotic L21 protein DD548_06945 PF04327 Cysteine protease Prp DD548_06950 PF01016 Ribosomal L27 protein DD548_06955 PF09269 Domain of unknown function (DUF1967) DD548_06955 PF01018 GTP1/OBG DD548_06955 PF01926 50S ribosome-binding GTPase DD548_06965 PF07499 RuvA, C-terminal domain DD548_06965 PF01330 RuvA N terminal domain DD548_06970 PF05496 Holliday junction DNA helicase RuvB P-loop domain DD548_06970 PF05491 RuvB C-terminal winged helix domain DD548_06970 PF17864 RuvB AAA lid domain DD548_06975 PF02547 Queuosine biosynthesis protein DD548_06980 PF01702 Queuine tRNA-ribosyltransferase DD548_06985 PF02699 Preprotein translocase subunit DD548_06990 PF07549 SecD/SecF GG Motif DD548_06990 PF02355 Protein export membrane protein DD548_06995 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DD548_06995 PF17768 RecJ OB domain DD548_06995 PF01368 DHH family DD548_06995 PF02272 DHHA1 domain DD548_07000 PF00156 Phosphoribosyl transferase domain DD548_07005 PF13291 ACT domain DD548_07005 PF04607 Region found in RelA / SpoT proteins DD548_07005 PF02824 TGS domain DD548_07010 PF02580 D-Tyr-tRNA(Tyr) deacylase DD548_07015 PF01520 N-acetylmuramoyl-L-alanine amidase DD548_07015 PF08239 Bacterial SH3 domain DD548_07020 PF13393 Histidyl-tRNA synthetase DD548_07020 PF03129 Anticodon binding domain DD548_07025 PF01336 OB-fold nucleic acid binding domain DD548_07025 PF02938 GAD domain DD548_07025 PF00152 tRNA synthetases class II (D, K and N) DD548_07040 PF00899 ThiF family DD548_07045 PF05496 Holliday junction DNA helicase RuvB P-loop domain DD548_07045 PF16193 AAA C-terminal domain DD548_07045 PF12002 MgsA AAA+ ATPase C terminal DD548_07050 PF02082 Transcriptional regulator DD548_07055 PF05532 CsbD-like DD548_07065 PF00296 Luciferase-like monooxygenase DD548_07070 PF00266 Aminotransferase class-V DD548_07085 PF13538 UvrD-like helicase C-terminal domain DD548_07085 PF14490 Helix-hairpin-helix containing domain DD548_07085 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DD548_07090 PF02272 DHHA1 domain DD548_07090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DD548_07090 PF01411 tRNA synthetases class II (A) DD548_07095 PF06135 IreB regulatory phosphoprotein DD548_07100 PF03652 Holliday junction resolvase DD548_07105 PF06949 Protein of unknown function (DUF1292) DD548_07125 PF00485 Phosphoribulokinase / Uridine kinase family DD548_07130 PF01272 Transcription elongation factor, GreA/GreB, C-term DD548_07130 PF03449 Transcription elongation factor, N-terminal DD548_07140 PF02626 Carboxyltransferase domain, subdomain A and B DD548_07145 PF00364 Biotin-requiring enzyme DD548_07155 PF03746 LamB/YcsF family DD548_07160 PF01566 Natural resistance-associated macrophage protein DD548_07165 PF12728 Helix-turn-helix domain DD548_07165 PF02661 Fic/DOC family DD548_07170 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_07180 PF01048 Phosphorylase superfamily DD548_07190 PF01926 50S ribosome-binding GTPase DD548_07195 PF08501 Shikimate dehydrogenase substrate binding domain DD548_07195 PF01488 Shikimate / quinate 5-dehydrogenase DD548_07195 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DD548_07200 PF01985 CRS1 / YhbY (CRM) domain DD548_07205 PF01467 Cytidylyltransferase-like DD548_07210 PF01966 HD domain DD548_07220 PF13649 Methyltransferase domain DD548_07230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DD548_07235 PF13567 Domain of unknown function (DUF4131) DD548_07235 PF00753 Metallo-beta-lactamase superfamily DD548_07235 PF03772 Competence protein DD548_07240 PF06144 DNA polymerase III, delta subunit DD548_07245 PF01649 Ribosomal protein S20 DD548_07250 PF00679 Elongation factor G C-terminus DD548_07250 PF00009 Elongation factor Tu GTP binding domain DD548_07250 PF03144 Elongation factor Tu domain 2 DD548_07250 PF06421 GTP-binding protein LepA C-terminus DD548_07260 PF06969 HemN C-terminal domain DD548_07260 PF04055 Radical SAM superfamily DD548_07265 PF01628 HrcA protein C terminal domain DD548_07270 PF01025 GrpE DD548_07275 PF00012 Hsp70 protein DD548_07280 PF00684 DnaJ central domain DD548_07280 PF01556 DnaJ C terminal domain DD548_07280 PF00226 DnaJ domain DD548_07290 PF04452 RNA methyltransferase DD548_07295 PF00919 Uncharacterized protein family UPF0004 DD548_07295 PF01938 TRAM domain DD548_07295 PF04055 Radical SAM superfamily DD548_07300 PF01165 Ribosomal protein S21 DD548_07305 PF01957 NfeD-like C-terminal, partner-binding DD548_07305 PF01972 Serine dehydrogenase proteinase DD548_07310 PF12127 SigmaW regulon antibacterial DD548_07320 PF02562 PhoH-like protein DD548_07325 PF02130 Uncharacterized protein family UPF0054 DD548_07335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DD548_07340 PF01926 50S ribosome-binding GTPase DD548_07340 PF07650 KH domain DD548_07345 PF02565 Recombination protein O C terminal DD548_07345 PF11967 Recombination protein O N terminal DD548_07350 PF03129 Anticodon binding domain DD548_07350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DD548_07355 PF08279 HTH domain DD548_07355 PF00571 CBS domain DD548_07360 PF03618 Kinase/pyrophosphorylase DD548_07365 PF00772 DnaB-like helicase N terminal domain DD548_07365 PF01807 CHC2 zinc finger DD548_07365 PF08275 DNA primase catalytic core, N-terminal domain DD548_07370 PF04545 Sigma-70, region 4 DD548_07370 PF04539 Sigma-70 region 3 DD548_07370 PF03979 Sigma-70 factor, region 1.1 DD548_07370 PF04542 Sigma-70 region 2 DD548_07370 PF00140 Sigma-70 factor, region 1.2 DD548_07375 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DD548_07380 PF01784 NIF3 (NGG1p interacting factor 3) DD548_07385 PF00271 Helicase conserved C-terminal domain DD548_07385 PF00270 DEAD/DEAH box helicase DD548_07390 PF01261 Xylose isomerase-like TIM barrel DD548_07395 PF00005 ABC transporter DD548_07400 PF00950 ABC 3 transport family DD548_07405 PF01475 Ferric uptake regulator family DD548_07410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DD548_07410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DD548_07420 PF00471 Ribosomal protein L33 DD548_07425 PF01812 5-formyltetrahydrofolate cyclo-ligase family DD548_07435 PF06014 Bacterial protein of unknown function (DUF910) DD548_07440 PF00480 ROK family DD548_07445 PF01910 Thiamine-binding protein DD548_07450 PF00753 Metallo-beta-lactamase superfamily DD548_07455 PF00437 Type II/IV secretion system protein DD548_07460 PF00482 Type II secretion system (T2SS), protein F DD548_07465 PF07963 Prokaryotic N-terminal methylation motif DD548_07490 PF01202 Shikimate kinase DD548_07495 PF01571 Aminomethyltransferase folate-binding domain DD548_07495 PF08669 Glycine cleavage T-protein C-terminal barrel domain DD548_07500 PF02347 Glycine cleavage system P-protein DD548_07505 PF00266 Aminotransferase class-V DD548_07510 PF00581 Rhodanese-like domain DD548_07515 PF03099 Biotin/lipoate A/B protein ligase family DD548_07530 PF00557 Metallopeptidase family M24 DD548_07530 PF01321 Creatinase/Prolidase N-terminal domain DD548_07535 PF08207 Elongation factor P (EF-P) KOW-like domain DD548_07535 PF09285 Elongation factor P, C-terminal DD548_07535 PF01132 Elongation factor P (EF-P) OB domain DD548_07540 PF00364 Biotin-requiring enzyme DD548_07545 PF02785 Biotin carboxylase C-terminal domain DD548_07545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DD548_07545 PF00289 Biotin carboxylase, N-terminal domain DD548_07550 PF03780 Asp23 family, cell envelope-related function DD548_07555 PF01029 NusB family DD548_07560 PF13742 OB-fold nucleic acid binding domain DD548_07560 PF02601 Exonuclease VII, large subunit DD548_07565 PF02609 Exonuclease VII small subunit DD548_07570 PF00348 Polyprenyl synthetase DD548_07575 PF02863 Arginine repressor, C-terminal domain DD548_07575 PF01316 Arginine repressor, DNA binding domain DD548_07580 PF13476 AAA domain DD548_07585 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_07585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DD548_07590 PF00676 Dehydrogenase E1 component DD548_07595 PF02779 Transketolase, pyrimidine binding domain DD548_07595 PF02780 Transketolase, C-terminal domain DD548_07600 PF02817 e3 binding domain DD548_07600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DD548_07600 PF00364 Biotin-requiring enzyme DD548_07605 PF06491 Disulphide isomerase DD548_07610 PF06081 Aromatic acid exporter family member 1 DD548_07610 PF11728 Putative aromatic acid exporter C-terminal domain DD548_07620 PF01546 Peptidase family M20/M25/M40 DD548_07620 PF07687 Peptidase dimerisation domain DD548_07625 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DD548_07625 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DD548_07640 PF00356 Bacterial regulatory proteins, lacI family DD548_07645 PF00128 Alpha amylase, catalytic domain DD548_07645 PF16657 Maltogenic Amylase, C-terminal domain DD548_07655 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DD548_07655 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DD548_07660 PF12706 Beta-lactamase superfamily domain DD548_07665 PF03807 NADP oxidoreductase coenzyme F420-dependent DD548_07665 PF14748 Pyrroline-5-carboxylate reductase dimerisation DD548_07670 PF00106 short chain dehydrogenase DD548_07680 PF00248 Aldo/keto reductase family DD548_07685 PF00293 NUDIX domain DD548_07690 PF01475 Ferric uptake regulator family DD548_07695 PF02899 Phage integrase, N-terminal SAM-like domain DD548_07695 PF00589 Phage integrase family DD548_07705 PF02616 Segregation and condensation protein ScpA DD548_07710 PF04079 Segregation and condensation complex subunit ScpB DD548_07715 PF01479 S4 domain DD548_07715 PF00849 RNA pseudouridylate synthase DD548_07720 PF00072 Response regulator receiver domain DD548_07720 PF00486 Transcriptional regulatory protein, C terminal DD548_07725 PF00672 HAMP domain DD548_07725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_07725 PF18698 Histidine kinase sensor domain DD548_07725 PF00512 His Kinase A (phospho-acceptor) domain DD548_07765 PF12822 ECF transporter, substrate-specific component DD548_07780 PF00271 Helicase conserved C-terminal domain DD548_07780 PF00270 DEAD/DEAH box helicase DD548_07785 PF01476 LysM domain DD548_07800 PF00710 Asparaginase, N-terminal DD548_07800 PF17763 Glutaminase/Asparaginase C-terminal domain DD548_07805 PF02224 Cytidylate kinase DD548_07825 PF00575 S1 RNA binding domain DD548_07830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DD548_07830 PF01926 50S ribosome-binding GTPase DD548_07835 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DD548_07835 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DD548_07840 PF00216 Bacterial DNA-binding protein DD548_07855 PF01209 ubiE/COQ5 methyltransferase family DD548_07860 PF00348 Polyprenyl synthetase DD548_07865 PF00334 Nucleoside diphosphate kinase DD548_07875 PF01264 Chorismate synthase DD548_07880 PF01761 3-dehydroquinate synthase DD548_07885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DD548_07895 PF08858 IDEAL domain DD548_07895 PF08864 UPF0302 domain DD548_07900 PF07187 Protein of unknown function (DUF1405) DD548_07905 PF04298 Putative neutral zinc metallopeptidase DD548_07910 PF03819 MazG nucleotide pyrophosphohydrolase domain DD548_07915 PF00534 Glycosyl transferases group 1 DD548_07915 PF13439 Glycosyltransferase Family 4 DD548_07920 PF13735 tRNA nucleotidyltransferase domain 2 putative DD548_07920 PF01743 Poly A polymerase head domain DD548_07920 PF12627 Probable RNA and SrmB- binding site of polymerase A DD548_07925 PF08279 HTH domain DD548_07925 PF03099 Biotin/lipoate A/B protein ligase family DD548_07925 PF02237 Biotin protein ligase C terminal domain DD548_07930 PF13307 Helicase C-terminal domain DD548_07930 PF00929 Exonuclease DD548_07935 PF00152 tRNA synthetases class II (D, K and N) DD548_07935 PF01336 OB-fold nucleic acid binding domain DD548_07940 PF07261 Replication initiation and membrane attachment DD548_07945 PF00730 HhH-GPD superfamily base excision DNA repair protein DD548_07945 PF00633 Helix-hairpin-helix motif DD548_07945 PF10576 Iron-sulfur binding domain of endonuclease III DD548_07955 PF00912 Transglycosylase DD548_07955 PF00905 Penicillin binding protein transpeptidase domain DD548_07960 PF03838 Recombination protein U DD548_07980 PF06908 YspA SLOG family DD548_07985 PF05103 DivIVA protein DD548_07995 PF02926 THUMP domain DD548_07995 PF01170 Putative RNA methylase family UPF0020 DD548_08010 PF00350 Dynamin family DD548_08015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DD548_08015 PF01367 5'-3' exonuclease, C-terminal SAM fold DD548_08020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DD548_08020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DD548_08025 PF00291 Pyridoxal-phosphate dependent enzyme DD548_08030 PF13520 Amino acid permease DD548_08035 PF07690 Major Facilitator Superfamily DD548_08055 PF02592 Putative vitamin uptake transporter DD548_08060 PF10782 Zinc-finger DD548_08065 PF13769 Virulence factor DD548_08065 PF08712 Scaffold protein Nfu/NifU N terminal DD548_08070 PF13769 Virulence factor DD548_08070 PF08712 Scaffold protein Nfu/NifU N terminal DD548_08075 PF06491 Disulphide isomerase DD548_08080 PF00303 Thymidylate synthase DD548_08085 PF00186 Dihydrofolate reductase DD548_08090 PF02645 Uncharacterised protein, DegV family COG1307 DD548_08095 PF01625 Peptide methionine sulfoxide reductase DD548_08100 PF01641 SelR domain DD548_08105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DD548_08110 PF06855 YozE SAM-like fold DD548_08115 PF01471 Putative peptidoglycan binding domain DD548_08115 PF03572 Peptidase family S41 DD548_08115 PF13180 PDZ domain DD548_08125 PF04101 Glycosyltransferase family 28 C-terminal domain DD548_08125 PF03033 Glycosyltransferase family 28 N-terminal domain DD548_08130 PF01569 PAP2 superfamily DD548_08145 PF00486 Transcriptional regulatory protein, C terminal DD548_08145 PF00072 Response regulator receiver domain DD548_08150 PF18719 ArlS sensor domain DD548_08150 PF00512 His Kinase A (phospho-acceptor) domain DD548_08150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_08155 PF16870 2-oxoglutarate dehydrogenase C-terminal DD548_08155 PF02779 Transketolase, pyrimidine binding domain DD548_08155 PF00676 Dehydrogenase E1 component DD548_08160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DD548_08160 PF00364 Biotin-requiring enzyme DD548_08160 PF02817 e3 binding domain DD548_08175 PF07728 AAA domain (dynein-related subfamily) DD548_08175 PF08406 CbbQ/NirQ/NorQ C-terminal DD548_08180 PF00092 von Willebrand factor type A domain DD548_08185 PF05525 Branched-chain amino acid transport protein DD548_08195 PF05816 Toxic anion resistance protein (TelA) DD548_08205 PF00708 Acylphosphatase DD548_08220 PF00313 'Cold-shock' DNA-binding domain DD548_08230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DD548_08230 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DD548_08235 PF00842 Alanine racemase, C-terminal domain DD548_08235 PF01168 Alanine racemase, N-terminal domain DD548_08240 PF01546 Peptidase family M20/M25/M40 DD548_08240 PF07687 Peptidase dimerisation domain DD548_08245 PF14602 Hexapeptide repeat of succinyl-transferase DD548_08245 PF00132 Bacterial transferase hexapeptide (six repeats) DD548_08245 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DD548_08250 PF01113 Dihydrodipicolinate reductase, N-terminus DD548_08250 PF05173 Dihydrodipicolinate reductase, C-terminus DD548_08255 PF00701 Dihydrodipicolinate synthetase family DD548_08260 PF02774 Semialdehyde dehydrogenase, dimerisation domain DD548_08260 PF01118 Semialdehyde dehydrogenase, NAD binding domain DD548_08265 PF01842 ACT domain DD548_08265 PF13840 ACT domain DD548_08265 PF00696 Amino acid kinase family DD548_08270 PF00005 ABC transporter DD548_08270 PF12848 ABC transporter DD548_08275 PF17783 CvfB-like winged helix domain DD548_08275 PF13509 S1 domain DD548_08285 PF12849 PBP superfamily domain DD548_08290 PF00528 Binding-protein-dependent transport system inner membrane component DD548_08295 PF00528 Binding-protein-dependent transport system inner membrane component DD548_08300 PF00005 ABC transporter DD548_08305 PF01895 PhoU domain DD548_08310 PF08439 Oligopeptidase F DD548_08310 PF01432 Peptidase family M3 DD548_08325 PF00528 Binding-protein-dependent transport system inner membrane component DD548_08330 PF00528 Binding-protein-dependent transport system inner membrane component DD548_08335 PF00005 ABC transporter DD548_08340 PF00005 ABC transporter DD548_08360 PF02388 FemAB family DD548_08365 PF02388 FemAB family DD548_08370 PF00290 Tryptophan synthase alpha chain DD548_08375 PF00291 Pyridoxal-phosphate dependent enzyme DD548_08380 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DD548_08385 PF00218 Indole-3-glycerol phosphate synthase DD548_08390 PF00591 Glycosyl transferase family, a/b domain DD548_08395 PF00117 Glutamine amidotransferase class-I DD548_08400 PF04715 Anthranilate synthase component I, N terminal region DD548_08400 PF00425 chorismate binding enzyme DD548_08405 PF05343 M42 glutamyl aminopeptidase DD548_08410 PF02153 Prephenate dehydrogenase DD548_08415 PF11798 IMS family HHH motif DD548_08415 PF11799 impB/mucB/samB family C-terminal domain DD548_08415 PF00817 impB/mucB/samB family DD548_08420 PF01361 Tautomerase enzyme DD548_08425 PF03816 Cell envelope-related transcriptional attenuator domain DD548_08430 PF01625 Peptide methionine sulfoxide reductase DD548_08435 PF03706 Lysylphosphatidylglycerol synthase TM region DD548_08435 PF09924 Uncharacterised conserved protein (DUF2156) DD548_08440 PF01594 AI-2E family transporter DD548_08450 PF00874 PRD domain DD548_08450 PF03123 CAT RNA binding domain DD548_08455 PF01235 Sodium:alanine symporter family DD548_08465 PF03989 DNA gyrase C-terminal domain, beta-propeller DD548_08465 PF00521 DNA gyrase/topoisomerase IV, subunit A DD548_08470 PF01751 Toprim domain DD548_08470 PF00204 DNA gyrase B DD548_08470 PF00986 DNA gyrase B subunit, carboxyl terminus DD548_08470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_08475 PF02660 Glycerol-3-phosphate acyltransferase DD548_08495 PF03061 Thioesterase superfamily DD548_08500 PF00694 Aconitase C-terminal domain DD548_08500 PF00330 Aconitase family (aconitate hydratase) DD548_08510 PF02028 BCCT, betaine/carnitine/choline family transporter DD548_08515 PF01741 Large-conductance mechanosensitive channel, MscL DD548_08520 PF13476 AAA domain DD548_08525 PF12320 Type 5 capsule protein repressor C-terminal domain DD548_08525 PF00149 Calcineurin-like phosphoesterase DD548_08530 PF07301 Protein of unknown function (DUF1453) DD548_08540 PF03672 Uncharacterised protein family (UPF0154) DD548_08545 PF02779 Transketolase, pyrimidine binding domain DD548_08545 PF02780 Transketolase, C-terminal domain DD548_08545 PF00456 Transketolase, thiamine diphosphate binding domain DD548_08550 PF05979 Bacterial protein of unknown function (DUF896) DD548_08560 PF00717 Peptidase S24-like DD548_08560 PF01726 LexA DNA binding domain DD548_08565 PF00188 Cysteine-rich secretory protein family DD548_08575 PF00478 IMP dehydrogenase / GMP reductase domain DD548_08580 PF00253 Ribosomal protein S14p/S29e DD548_08585 PF00471 Ribosomal protein L33 DD548_08590 PF00199 Catalase DD548_08590 PF06628 Catalase-related immune-responsive DD548_08595 PF00324 Amino acid permease DD548_08615 PF08544 GHMP kinases C terminal DD548_08615 PF00288 GHMP kinases N terminal domain DD548_08620 PF00291 Pyridoxal-phosphate dependent enzyme DD548_08625 PF01842 ACT domain DD548_08625 PF00742 Homoserine dehydrogenase DD548_08625 PF03447 Homoserine dehydrogenase, NAD binding domain DD548_08630 PF13840 ACT domain DD548_08630 PF00696 Amino acid kinase family DD548_08645 PF00565 Staphylococcal nuclease homologue DD548_08655 PF00072 Response regulator receiver domain DD548_08655 PF00196 Bacterial regulatory proteins, luxR family DD548_08670 PF00005 ABC transporter DD548_08675 PF13091 PLD-like domain DD548_08675 PF13396 Phospholipase_D-nuclease N-terminal DD548_08785 PF00120 Glutamine synthetase, catalytic domain DD548_08785 PF03951 Glutamine synthetase, beta-Grasp domain DD548_08790 PF13411 MerR HTH family regulatory protein DD548_08795 PF06838 Methionine gamma-lyase DD548_08805 PF00255 Glutathione peroxidase DD548_08810 PF17209 Hfq protein DD548_08825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DD548_08825 PF01266 FAD dependent oxidoreductase DD548_08830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DD548_08830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DD548_08835 PF00230 Major intrinsic protein DD548_08840 PF04309 Glycerol-3-phosphate responsive antiterminator DD548_08845 PF01119 DNA mismatch repair protein, C-terminal domain DD548_08845 PF08676 MutL C terminal dimerisation domain DD548_08850 PF00488 MutS domain V DD548_08850 PF05190 MutS family domain IV DD548_08850 PF05192 MutS domain III DD548_08850 PF05188 MutS domain II DD548_08850 PF01624 MutS domain I DD548_08865 PF01938 TRAM domain DD548_08865 PF00919 Uncharacterized protein family UPF0004 DD548_08865 PF04055 Radical SAM superfamily DD548_08870 PF01910 Thiamine-binding protein DD548_08875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DD548_08880 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DD548_08880 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DD548_08880 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DD548_08885 PF13277 YmdB-like protein DD548_08895 PF12072 Domain of unknown function (DUF3552) DD548_08895 PF00013 KH domain DD548_08895 PF01966 HD domain DD548_08900 PF00154 recA bacterial DNA recombination protein DD548_08905 PF00994 Probable molybdopterin binding domain DD548_08905 PF18146 Damage-inducible protein CinA KH domain DD548_08905 PF02464 Competence-damaged protein DD548_08910 PF01066 CDP-alcohol phosphatidyltransferase DD548_08920 PF11868 Protein of unknown function (DUF3388) DD548_08930 PF00675 Insulinase (Peptidase family M16) DD548_08930 PF05193 Peptidase M16 inactive domain DD548_08935 PF05193 Peptidase M16 inactive domain DD548_08940 PF00392 Bacterial regulatory proteins, gntR family DD548_08940 PF07702 UTRA domain DD548_08945 PF17854 FtsK alpha domain DD548_08945 PF09397 Ftsk gamma domain DD548_08945 PF01580 FtsK/SpoIIIE family DD548_08950 PF17770 Ribonuclease J C-terminal domain DD548_08950 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DD548_08950 PF00753 Metallo-beta-lactamase superfamily DD548_08960 PF00575 S1 RNA binding domain DD548_08960 PF03725 3' exoribonuclease family, domain 2 DD548_08960 PF01138 3' exoribonuclease family, domain 1 DD548_08960 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DD548_08960 PF00013 KH domain DD548_08965 PF00312 Ribosomal protein S15 DD548_08970 PF01687 Riboflavin kinase DD548_08970 PF06574 FAD synthetase DD548_08975 PF16198 tRNA pseudouridylate synthase B C-terminal domain DD548_08975 PF01509 TruB family pseudouridylate synthase (N terminal domain) DD548_08980 PF02033 Ribosome-binding factor A DD548_08985 PF04760 Translation initiation factor IF-2, N-terminal region DD548_08985 PF00009 Elongation factor Tu GTP binding domain DD548_08985 PF11987 Translation-initiation factor 2 DD548_08990 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DD548_08995 PF04296 Protein of unknown function (DUF448) DD548_09000 PF00575 S1 RNA binding domain DD548_09000 PF08529 NusA N-terminal domain DD548_09000 PF13184 NusA-like KH domain DD548_09005 PF02576 RimP N-terminal domain DD548_09005 PF17384 RimP C-terminal SH3 domain DD548_09015 PF14480 DNA polymerase III polC-type N-terminus I DD548_09015 PF00929 Exonuclease DD548_09015 PF02811 PHP domain DD548_09015 PF14579 Helix-hairpin-helix motif DD548_09015 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DD548_09015 PF11490 DNA polymerase III polC-type N-terminus II DD548_09015 PF07733 Bacterial DNA polymerase III alpha NTPase domain DD548_09020 PF04073 Aminoacyl-tRNA editing domain DD548_09020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DD548_09020 PF03129 Anticodon binding domain DD548_09025 PF13180 PDZ domain DD548_09025 PF02163 Peptidase family M50 DD548_09035 PF01255 Putative undecaprenyl diphosphate synthase DD548_09040 PF01765 Ribosome recycling factor DD548_09045 PF00696 Amino acid kinase family DD548_09050 PF00889 Elongation factor TS DD548_09060 PF00318 Ribosomal protein S2 DD548_09070 PF08222 CodY helix-turn-helix domain DD548_09070 PF06018 CodY GAF-like domain DD548_09075 PF00004 ATPase family associated with various cellular activities (AAA) DD548_09075 PF07724 AAA domain (Cdc48 subfamily) DD548_09075 PF10431 C-terminal, D2-small domain, of ClpB protein DD548_09080 PF00227 Proteasome subunit DD548_09085 PF00589 Phage integrase family DD548_09085 PF02899 Phage integrase, N-terminal SAM-like domain DD548_09090 PF01134 Glucose inhibited division protein A DD548_09095 PF01131 DNA topoisomerase DD548_09095 PF01396 Topoisomerase DNA binding C4 zinc finger DD548_09095 PF01751 Toprim domain DD548_09100 PF02481 DNA recombination-mediator protein A DD548_09105 PF02388 FemAB family DD548_09110 PF01476 LysM domain DD548_09110 PF05257 CHAP domain DD548_09115 PF02629 CoA binding domain DD548_09115 PF00549 CoA-ligase DD548_09120 PF00549 CoA-ligase DD548_09120 PF08442 ATP-grasp domain DD548_09125 PF01351 Ribonuclease HII DD548_09130 PF01926 50S ribosome-binding GTPase DD548_09140 PF01245 Ribosomal protein L19 DD548_09145 PF01746 tRNA (Guanine-1)-methyltransferase DD548_09150 PF05239 PRC-barrel domain DD548_09150 PF01782 RimM N-terminal domain DD548_09155 PF00886 Ribosomal protein S16 DD548_09160 PF02978 Signal peptide binding domain DD548_09160 PF02881 SRP54-type protein, helical bundle domain DD548_09160 PF00448 SRP54-type protein, GTPase domain DD548_09165 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DD548_09170 PF02881 SRP54-type protein, helical bundle domain DD548_09170 PF00448 SRP54-type protein, GTPase domain DD548_09175 PF06470 SMC proteins Flexible Hinge Domain DD548_09175 PF02463 RecF/RecN/SMC N terminal domain DD548_09180 PF00035 Double-stranded RNA binding motif DD548_09180 PF14622 Ribonuclease-III-like DD548_09185 PF00550 Phosphopantetheine attachment site DD548_09200 PF00698 Acyl transferase domain DD548_09205 PF02504 Fatty acid synthesis protein DD548_09210 PF03061 Thioesterase superfamily DD548_09215 PF00270 DEAD/DEAH box helicase DD548_09215 PF17191 RecG wedge domain DD548_09215 PF00271 Helicase conserved C-terminal domain DD548_09220 PF02734 DAK2 domain DD548_09220 PF13684 Dihydroxyacetone kinase family DD548_09225 PF03780 Asp23 family, cell envelope-related function DD548_09230 PF00830 Ribosomal L28 family DD548_09240 PF00834 Ribulose-phosphate 3 epimerase family DD548_09245 PF16745 RsgA N-terminal domain DD548_09245 PF03193 RsgA GTPase DD548_09250 PF00069 Protein kinase domain DD548_09250 PF03793 PASTA domain DD548_09260 PF04055 Radical SAM superfamily DD548_09265 PF01189 16S rRNA methyltransferase RsmB/F DD548_09265 PF01029 NusB family DD548_09270 PF02911 Formyl transferase, C-terminal domain DD548_09270 PF00551 Formyl transferase DD548_09275 PF01327 Polypeptide deformylase DD548_09280 PF05154 TM2 domain DD548_09290 PF18074 Primosomal protein N C-terminal domain DD548_09290 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DD548_09290 PF04851 Type III restriction enzyme, res subunit DD548_09290 PF17764 3′ DNA-binding domain (3′BD) DD548_09290 PF00271 Helicase conserved C-terminal domain DD548_09295 PF02441 Flavoprotein DD548_09295 PF04127 DNA / pantothenate metabolism flavoprotein DD548_09300 PF01192 RNA polymerase Rpb6 DD548_09305 PF00625 Guanylate kinase DD548_09325 PF00156 Phosphoribosyl transferase domain DD548_09330 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DD548_09335 PF02142 MGS-like domain DD548_09335 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DD548_09335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DD548_09340 PF00117 Glutamine amidotransferase class-I DD548_09340 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DD548_09345 PF01979 Amidohydrolase family DD548_09350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DD548_09350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DD548_09355 PF00860 Permease family DD548_09360 PF00156 Phosphoribosyl transferase domain DD548_09365 PF01479 S4 domain DD548_09365 PF00849 RNA pseudouridylate synthase DD548_09370 PF01252 Signal peptidase (SPase) II DD548_09385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DD548_09390 PF08264 Anticodon-binding domain of tRNA DD548_09390 PF06827 Zinc finger found in FPG and IleRS DD548_09390 PF00133 tRNA synthetases class I (I, L, M and V) DD548_09395 PF05103 DivIVA protein DD548_09400 PF17774 Putative RNA-binding domain in YlmH DD548_09400 PF01479 S4 domain DD548_09405 PF02325 YGGT family DD548_09410 PF04472 Cell division protein SepF DD548_09415 PF01168 Alanine racemase, N-terminal domain DD548_09425 PF12327 FtsZ family, C-terminal domain DD548_09425 PF00091 Tubulin/FtsZ family, GTPase domain DD548_09430 PF02491 SHS2 domain inserted in FTSA DD548_09435 PF08478 POTRA domain, FtsQ-type DD548_09435 PF03799 Cell division protein FtsQ DD548_09440 PF08245 Mur ligase middle domain DD548_09440 PF02875 Mur ligase family, glutamate ligase domain DD548_09445 PF00953 Glycosyl transferase family 4 DD548_09455 PF04977 Septum formation initiator DD548_09460 PF01795 MraW methylase family DD548_09465 PF02381 MraZ protein, putative antitoxin-like DD548_09470 PF10079 Bacillithiol biosynthesis BshC DD548_09480 PF13419 Haloacid dehalogenase-like hydrolase DD548_09485 PF05480 Staphylococcus haemolytic protein DD548_09490 PF05480 Staphylococcus haemolytic protein DD548_09515 PF03606 C4-dicarboxylate anaerobic carrier DD548_09520 PF00696 Amino acid kinase family DD548_09525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DD548_09525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DD548_09530 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_09530 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_09535 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_09535 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_09555 PF07968 Leukocidin/Hemolysin toxin family DD548_09585 PF12199 Extracellular fibrinogen binding protein C terminal DD548_09595 PF16104 Formyl peptide receptor-like 1 inhibitory protein DD548_09615 PF12850 Calcineurin-like phosphoesterase superfamily domain DD548_09620 PF01725 Ham1 family DD548_09625 PF01177 Asp/Glu/Hydantoin racemase DD548_09630 PF13085 2Fe-2S iron-sulfur cluster binding domain DD548_09630 PF13183 4Fe-4S dicluster domain DD548_09635 PF02910 Fumarate reductase flavoprotein C-term DD548_09635 PF00890 FAD binding domain DD548_09640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DD548_09645 PF02151 UvrB/uvrC motif DD548_09645 PF08459 UvrC Helix-hairpin-helix N-terminal DD548_09645 PF01541 GIY-YIG catalytic domain DD548_09655 PF00085 Thioredoxin DD548_09660 PF01713 Smr domain DD548_09660 PF00488 MutS domain V DD548_09665 PF14791 DNA polymerase beta thumb DD548_09665 PF14716 Helix-hairpin-helix domain DD548_09665 PF02811 PHP domain DD548_09675 PF05164 Cell division protein ZapA DD548_09680 PF11858 Domain of unknown function (DUF3378) DD548_09680 PF01351 Ribonuclease HII DD548_09690 PF03147 Ferredoxin-fold anticodon binding domain DD548_09690 PF03483 B3/4 domain DD548_09690 PF01588 Putative tRNA binding domain DD548_09690 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DD548_09690 PF03484 tRNA synthetase B5 domain DD548_09695 PF01409 tRNA synthetases class II core domain (F) DD548_09695 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DD548_09700 PF00588 SpoU rRNA Methylase family DD548_09700 PF08032 RNA 2'-O ribose methyltransferase substrate binding DD548_09710 PF03992 Antibiotic biosynthesis monooxygenase DD548_09715 PF04203 Sortase domain DD548_09720 PF01032 FecCD transport family DD548_09725 PF01497 Periplasmic binding protein DD548_09735 PF05031 Iron Transport-associated domain DD548_09740 PF05031 Iron Transport-associated domain DD548_09740 PF00746 LPXTG cell wall anchor motif DD548_09745 PF05031 Iron Transport-associated domain DD548_09745 PF00746 LPXTG cell wall anchor motif DD548_09745 PF04650 YSIRK type signal peptide DD548_09750 PF01783 Ribosomal L32p protein family DD548_09765 PF05636 HIGH Nucleotidyl Transferase DD548_09770 PF01467 Cytidylyltransferase-like DD548_09785 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DD548_09790 PF03009 Glycerophosphoryl diester phosphodiesterase family DD548_09795 PF06133 Control of competence regulator ComK, YlbF/YmcA DD548_09815 PF01040 UbiA prenyltransferase family DD548_09820 PF02628 Cytochrome oxidase assembly protein DD548_09825 PF02436 Conserved carboxylase domain DD548_09825 PF02785 Biotin carboxylase C-terminal domain DD548_09825 PF00289 Biotin carboxylase, N-terminal domain DD548_09825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DD548_09825 PF00364 Biotin-requiring enzyme DD548_09825 PF00682 HMGL-like DD548_09830 PF01098 Cell cycle protein DD548_09835 PF07408 Protein of unknown function (DUF1507) DD548_09860 PF00459 Inositol monophosphatase family DD548_09865 PF06335 Protein of unknown function (DUF1054) DD548_09870 PF01566 Natural resistance-associated macrophage protein DD548_09885 PF13416 Bacterial extracellular solute-binding protein DD548_09890 PF00528 Binding-protein-dependent transport system inner membrane component DD548_09895 PF00528 Binding-protein-dependent transport system inner membrane component DD548_09900 PF08402 TOBE domain DD548_09900 PF00005 ABC transporter DD548_09910 PF05256 Uncharacterised protein family (UPF0223) DD548_09915 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_09915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DD548_09920 PF02817 e3 binding domain DD548_09920 PF00364 Biotin-requiring enzyme DD548_09920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DD548_09925 PF02779 Transketolase, pyrimidine binding domain DD548_09925 PF02780 Transketolase, C-terminal domain DD548_09930 PF00676 Dehydrogenase E1 component DD548_09940 PF01327 Polypeptide deformylase DD548_09955 PF00753 Metallo-beta-lactamase superfamily DD548_09955 PF17770 Ribonuclease J C-terminal domain DD548_09955 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DD548_09960 PF02080 TrkA-C domain DD548_09960 PF02254 TrkA-N domain DD548_09965 PF02322 Cytochrome bd terminal oxidase subunit II DD548_09970 PF01654 Cytochrome bd terminal oxidase subunit I DD548_09980 PF02896 PEP-utilising enzyme, TIM barrel domain DD548_09980 PF05524 PEP-utilising enzyme, N-terminal DD548_09980 PF00391 PEP-utilising enzyme, mobile domain DD548_09985 PF00381 PTS HPr component phosphorylation site DD548_09995 PF10672 S-adenosylmethionine-dependent methyltransferase DD548_09995 PF17785 PUA-like domain DD548_10020 PF09819 ABC-type cobalt transport system, permease component DD548_10025 PF00005 ABC transporter DD548_10030 PF02361 Cobalt transport protein DD548_10035 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DD548_10035 PF02843 Phosphoribosylglycinamide synthetase, C domain DD548_10035 PF02844 Phosphoribosylglycinamide synthetase, N domain DD548_10040 PF02142 MGS-like domain DD548_10040 PF01808 AICARFT/IMPCHase bienzyme DD548_10045 PF00551 Formyl transferase DD548_10050 PF02769 AIR synthase related protein, C-terminal domain DD548_10050 PF00586 AIR synthase related protein, N-terminal domain DD548_10055 PF13537 Glutamine amidotransferase domain DD548_10055 PF00156 Phosphoribosyl transferase domain DD548_10060 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DD548_10060 PF00586 AIR synthase related protein, N-terminal domain DD548_10060 PF02769 AIR synthase related protein, C-terminal domain DD548_10070 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase DD548_10075 PF01259 SAICAR synthetase DD548_10080 PF02222 ATP-grasp domain DD548_10080 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DD548_10080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_10085 PF00731 AIR carboxylase DD548_10090 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DD548_10090 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DD548_10105 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DD548_10105 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DD548_10110 PF00115 Cytochrome C and Quinol oxidase polypeptide I DD548_10115 PF00510 Cytochrome c oxidase subunit III DD548_10120 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DD548_10125 PF00144 Beta-lactamase DD548_10130 PF03816 Cell envelope-related transcriptional attenuator domain DD548_10135 PF10804 Protein of unknown function (DUF2538) DD548_10140 PF13673 Acetyltransferase (GNAT) domain DD548_10145 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DD548_10145 PF01510 N-acetylmuramoyl-L-alanine amidase DD548_10145 PF13457 GW (Gly-Tryp) dipeptide domain DD548_10160 PF01757 Acyltransferase family DD548_10165 PF00155 Aminotransferase class I and II DD548_10175 PF14731 Staphopain proregion DD548_10175 PF05543 Staphopain peptidase C47 DD548_10180 PF09023 Staphostatin B DD548_10185 PF00378 Enoyl-CoA hydratase/isomerase DD548_10190 PF00561 alpha/beta hydrolase fold DD548_10195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DD548_10195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DD548_10195 PF16582 Middle domain of thiamine pyrophosphate DD548_10200 PF00425 chorismate binding enzyme DD548_10210 PF01040 UbiA prenyltransferase family DD548_10215 PF00583 Acetyltransferase (GNAT) family DD548_10220 PF05154 TM2 domain DD548_10230 PF01497 Periplasmic binding protein DD548_10240 PF00534 Glycosyl transferases group 1 DD548_10255 PF00005 ABC transporter DD548_10255 PF02687 FtsX-like permease family DD548_10255 PF12704 MacB-like periplasmic core domain DD548_10290 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) DD548_10295 PF03099 Biotin/lipoate A/B protein ligase family DD548_10295 PF10437 Bacterial lipoate protein ligase C-terminus DD548_10305 PF06338 ComK protein DD548_10320 PF00149 Calcineurin-like phosphoesterase DD548_10320 PF02872 5'-nucleotidase, C-terminal domain DD548_10325 PF02386 Cation transport protein DD548_10330 PF13180 PDZ domain DD548_10335 PF03741 Integral membrane protein TerC family DD548_10340 PF00009 Elongation factor Tu GTP binding domain DD548_10340 PF03144 Elongation factor Tu domain 2 DD548_10340 PF16658 Class II release factor RF3, C-terminal domain DD548_10350 PF01225 Mur ligase family, catalytic domain DD548_10350 PF02875 Mur ligase family, glutamate ligase domain DD548_10350 PF08245 Mur ligase middle domain DD548_10355 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase DD548_10355 PF04101 Glycosyltransferase family 28 C-terminal domain DD548_10360 PF07690 Major Facilitator Superfamily DD548_10375 PF01235 Sodium:alanine symporter family DD548_10380 PF01594 AI-2E family transporter DD548_10395 PF00571 CBS domain DD548_10395 PF01769 Divalent cation transporter DD548_10395 PF03448 MgtE intracellular N domain DD548_10400 PF00849 RNA pseudouridylate synthase DD548_10405 PF01513 ATP-NAD kinase DD548_10410 PF04607 Region found in RelA / SpoT proteins DD548_10425 PF01152 Bacterial-like globin DD548_10435 PF01432 Peptidase family M3 DD548_10435 PF08439 Oligopeptidase F DD548_10445 PF05389 Negative regulator of genetic competence (MecA) DD548_10450 PF03960 ArsC family DD548_10455 PF00579 tRNA synthetases class I (W and Y) DD548_10460 PF00528 Binding-protein-dependent transport system inner membrane component DD548_10460 PF12911 N-terminal TM domain of oligopeptide transport permease C DD548_10465 PF00528 Binding-protein-dependent transport system inner membrane component DD548_10470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DD548_10470 PF00005 ABC transporter DD548_10475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DD548_10475 PF00005 ABC transporter DD548_10480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DD548_10485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DD548_10490 PF00005 ABC transporter DD548_10490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DD548_10495 PF00005 ABC transporter DD548_10495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DD548_10500 PF00528 Binding-protein-dependent transport system inner membrane component DD548_10500 PF12911 N-terminal TM domain of oligopeptide transport permease C DD548_10505 PF00528 Binding-protein-dependent transport system inner membrane component DD548_10515 PF02801 Beta-ketoacyl synthase, C-terminal domain DD548_10515 PF00109 Beta-ketoacyl synthase, N-terminal domain DD548_10520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DD548_10520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DD548_10530 PF03642 MAP domain DD548_10535 PF01161 Phosphatidylethanolamine-binding protein DD548_10560 PF00004 ATPase family associated with various cellular activities (AAA) DD548_10560 PF07724 AAA domain (Cdc48 subfamily) DD548_10560 PF17871 AAA lid domain DD548_10560 PF02861 Clp amino terminal domain, pathogenicity island component DD548_10560 PF10431 C-terminal, D2-small domain, of ClpB protein DD548_10565 PF01757 Acyltransferase family DD548_10570 PF01883 Iron-sulfur cluster assembly protein DD548_10580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DD548_10580 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_10585 PF07457 Protein of unknown function (DUF1516) DD548_10590 PF01557 Fumarylacetoacetate (FAA) hydrolase family DD548_10595 PF00580 UvrD/REP helicase N-terminal domain DD548_10595 PF12705 PD-(D/E)XK nuclease superfamily DD548_10595 PF13361 UvrD-like helicase C-terminal domain DD548_10600 PF12705 PD-(D/E)XK nuclease superfamily DD548_10600 PF13361 UvrD-like helicase C-terminal domain DD548_10605 PF10502 Signal peptidase, peptidase S26 DD548_10610 PF10502 Signal peptidase, peptidase S26 DD548_10615 PF09335 SNARE associated Golgi protein DD548_10620 PF00342 Phosphoglucose isomerase DD548_10625 PF00764 Arginosuccinate synthase DD548_10630 PF14698 Argininosuccinate lyase C-terminal DD548_10630 PF00206 Lyase DD548_10635 PF03009 Glycerophosphoryl diester phosphodiesterase family DD548_10645 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DD548_10645 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DD548_10650 PF00202 Aminotransferase class-III DD548_10655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DD548_10660 PF00575 S1 RNA binding domain DD548_10665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DD548_10675 PF00361 Proton-conducting membrane transporter DD548_10675 PF13244 Domain of unknown function (DUF4040) DD548_10675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DD548_10680 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DD548_10685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DD548_10690 PF00361 Proton-conducting membrane transporter DD548_10695 PF01899 Na+/H+ ion antiporter subunit DD548_10700 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DD548_10705 PF03334 Na+/H+ antiporter subunit DD548_10715 PF03061 Thioesterase superfamily DD548_10720 PF03553 Na+/H+ antiporter family DD548_10720 PF13726 Na+-H+ antiporter family DD548_10725 PF02789 Cytosol aminopeptidase family, N-terminal domain DD548_10725 PF00883 Cytosol aminopeptidase family, catalytic domain DD548_10730 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_10735 PF01521 Iron-sulphur cluster biosynthesis DD548_10740 PF07293 Protein of unknown function (DUF1450) DD548_10745 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_10750 PF07315 Protein of unknown function (DUF1462) DD548_10755 PF01106 NifU-like domain DD548_10760 PF04914 DltD protein DD548_10765 PF00550 Phosphopantetheine attachment site DD548_10770 PF03062 MBOAT, membrane-bound O-acyltransferase family DD548_10775 PF00501 AMP-binding enzyme DD548_10775 PF13193 AMP-binding enzyme C-terminal domain DD548_10790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_10790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_10795 PF13344 Haloacid dehalogenase-like hydrolase DD548_10800 PF01934 Protein of unknown function DUF86 DD548_10810 PF06265 Protein of unknown function (DUF1027) DD548_10815 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DD548_10815 PF04055 Radical SAM superfamily DD548_10825 PF01925 Sulfite exporter TauE/SafE DD548_10830 PF01904 Protein of unknown function DUF72 DD548_10840 PF03060 Nitronate monooxygenase DD548_10845 PF03471 Transporter associated domain DD548_10845 PF01595 Cyclin M transmembrane N-terminal domain DD548_10845 PF00571 CBS domain DD548_10865 PF01458 Uncharacterized protein family (UPF0051) DD548_10870 PF01592 NifU-like N terminal domain DD548_10875 PF00266 Aminotransferase class-V DD548_10880 PF01458 Uncharacterized protein family (UPF0051) DD548_10885 PF00005 ABC transporter DD548_10895 PF05532 CsbD-like DD548_10900 PF03180 NLPA lipoprotein DD548_10905 PF00528 Binding-protein-dependent transport system inner membrane component DD548_10910 PF00005 ABC transporter DD548_10910 PF09383 NIL domain DD548_10920 PF01751 Toprim domain DD548_10930 PF09234 Domain of unknown function (DUF1963) DD548_10940 PF01597 Glycine cleavage H-protein DD548_10945 PF03960 ArsC family DD548_10950 PF00085 Thioredoxin DD548_10960 PF01487 Type I 3-dehydroquinase DD548_10965 PF02566 OsmC-like protein DD548_10975 PF01810 LysE type translocator DD548_10980 PF00300 Histidine phosphatase superfamily (branch 1) DD548_11020 PF00313 'Cold-shock' DNA-binding domain DD548_11025 PF00565 Staphylococcal nuclease homologue DD548_11045 PF04650 YSIRK type signal peptide DD548_11045 PF00746 LPXTG cell wall anchor motif DD548_11045 PF17961 Bacterial Ig domain DD548_11045 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_11090 PF01668 SmpB protein DD548_11095 PF17876 Cold shock domain DD548_11095 PF00575 S1 RNA binding domain DD548_11095 PF00773 RNB domain DD548_11095 PF08206 Ribonuclease B OB domain DD548_11100 PF12146 Serine aminopeptidase, S33 DD548_11105 PF03840 Preprotein translocase SecG subunit DD548_11115 PF03952 Enolase, N-terminal domain DD548_11115 PF00113 Enolase, C-terminal TIM barrel domain DD548_11120 PF01676 Metalloenzyme superfamily DD548_11120 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DD548_11125 PF00121 Triosephosphate isomerase DD548_11130 PF00162 Phosphoglycerate kinase DD548_11135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DD548_11135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DD548_11140 PF04198 Putative sugar-binding domain DD548_11150 PF08338 Domain of unknown function (DUF1731) DD548_11150 PF01370 NAD dependent epimerase/dehydratase family DD548_11155 PF00574 Clp protease DD548_11165 PF02650 WhiA C-terminal HTH domain DD548_11165 PF14527 WhiA LAGLIDADG-like domain DD548_11165 PF10298 WhiA N-terminal LAGLIDADG-like domain DD548_11170 PF01933 Uncharacterised protein family UPF0052 DD548_11175 PF03668 P-loop ATPase protein family DD548_11185 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_11195 PF14602 Hexapeptide repeat of succinyl-transferase DD548_11200 PF01790 Prolipoprotein diacylglyceryl transferase DD548_11205 PF02603 HPr Serine kinase N terminus DD548_11205 PF07475 HPr Serine kinase C-terminal domain DD548_11210 PF17755 UvrA DNA-binding domain DD548_11210 PF17760 UvrA interaction domain DD548_11210 PF00005 ABC transporter DD548_11215 PF12344 Ultra-violet resistance protein B DD548_11215 PF02151 UvrB/uvrC motif DD548_11215 PF04851 Type III restriction enzyme, res subunit DD548_11215 PF00271 Helicase conserved C-terminal domain DD548_11215 PF17757 UvrB interaction domain DD548_11230 PF01476 LysM domain DD548_11230 PF05257 CHAP domain DD548_11250 PF07516 SecA Wing and Scaffold domain DD548_11250 PF07517 SecA DEAD-like domain DD548_11250 PF02810 SEC-C motif DD548_11250 PF01043 SecA preprotein cross-linking domain DD548_11255 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DD548_11255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DD548_11265 PF00271 Helicase conserved C-terminal domain DD548_11265 PF04851 Type III restriction enzyme, res subunit DD548_11270 PF02645 Uncharacterised protein, DegV family COG1307 DD548_11275 PF01205 Uncharacterized protein family UPF0029 DD548_11275 PF09186 Domain of unknown function (DUF1949) DD548_11280 PF00953 Glycosyl transferase family 4 DD548_11285 PF00990 Diguanylate cyclase, GGDEF domain DD548_11285 PF07694 5TMR of 5TMR-LYT DD548_11300 PF07687 Peptidase dimerisation domain DD548_11300 PF01546 Peptidase family M20/M25/M40 DD548_11305 PF02595 Glycerate kinase family DD548_11325 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DD548_11325 PF01565 FAD binding domain DD548_11335 PF01497 Periplasmic binding protein DD548_11340 PF00005 ABC transporter DD548_11345 PF01032 FecCD transport family DD548_11350 PF01032 FecCD transport family DD548_11365 PF00268 Ribonucleotide reductase, small chain DD548_11370 PF02867 Ribonucleotide reductase, barrel domain DD548_11370 PF00317 Ribonucleotide reductase, all-alpha domain DD548_11370 PF08343 Ribonucleotide reductase N-terminal DD548_11375 PF07972 NrdI Flavodoxin like DD548_11390 PF14489 QueF-like protein DD548_11400 PF00854 POT family DD548_11410 PF00781 Diacylglycerol kinase catalytic domain DD548_11420 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DD548_11425 PF00155 Aminotransferase class I and II DD548_11430 PF00528 Binding-protein-dependent transport system inner membrane component DD548_11435 PF00005 ABC transporter DD548_11435 PF00571 CBS domain DD548_11440 PF00270 DEAD/DEAH box helicase DD548_11440 PF16124 RecQ zinc-binding DD548_11440 PF09382 RQC domain DD548_11440 PF00271 Helicase conserved C-terminal domain DD548_11440 PF00570 HRDC domain DD548_11445 PF00005 ABC transporter DD548_11445 PF16326 ABC transporter C-terminal domain DD548_11445 PF12848 ABC transporter DD548_11450 PF00884 Sulfatase DD548_11475 PF04715 Anthranilate synthase component I, N terminal region DD548_11475 PF00425 chorismate binding enzyme DD548_11480 PF00117 Glutamine amidotransferase class-I DD548_11480 PF02885 Glycosyl transferase family, helical bundle domain DD548_11480 PF00591 Glycosyl transferase family, a/b domain DD548_11485 PF06508 Queuosine biosynthesis protein QueC DD548_11490 PF01242 6-pyruvoyl tetrahydropterin synthase DD548_11495 PF04055 Radical SAM superfamily DD548_11515 PF00486 Transcriptional regulatory protein, C terminal DD548_11515 PF00072 Response regulator receiver domain DD548_11520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_11520 PF00512 His Kinase A (phospho-acceptor) domain DD548_11525 PF00535 Glycosyl transferase family 2 DD548_11530 PF00248 Aldo/keto reductase family DD548_11535 PF03471 Transporter associated domain DD548_11535 PF00571 CBS domain DD548_11535 PF01595 Cyclin M transmembrane N-terminal domain DD548_11540 PF01979 Amidohydrolase family DD548_11545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DD548_11545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DD548_11550 PF00294 pfkB family carbohydrate kinase DD548_11555 PF00455 DeoR C terminal sensor domain DD548_11555 PF08220 DeoR-like helix-turn-helix domain DD548_11560 PF04073 Aminoacyl-tRNA editing domain DD548_11570 PF07690 Major Facilitator Superfamily DD548_11595 PF00939 Sodium:sulfate symporter transmembrane region DD548_11605 PF00248 Aldo/keto reductase family DD548_11610 PF07683 Cobalamin synthesis protein cobW C-terminal domain DD548_11610 PF02492 CobW/HypB/UreG, nucleotide-binding domain DD548_11615 PF01047 MarR family DD548_11620 PF00005 ABC transporter DD548_11620 PF00664 ABC transporter transmembrane region DD548_11625 PF00664 ABC transporter transmembrane region DD548_11625 PF00005 ABC transporter DD548_11630 PF02673 Bacitracin resistance protein BacA DD548_11640 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DD548_11645 PF03641 Possible lysine decarboxylase DD548_11650 PF13302 Acetyltransferase (GNAT) domain DD548_11675 PF04306 Protein of unknown function (DUF456) DD548_11680 PF07690 Major Facilitator Superfamily DD548_11685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DD548_11685 PF03466 LysR substrate binding domain DD548_11705 PF01709 Transcriptional regulator DD548_11715 PF02311 AraC-like ligand binding domain DD548_11715 PF12833 Helix-turn-helix domain DD548_11730 PF01476 LysM domain DD548_11730 PF05257 CHAP domain DD548_11735 PF01384 Phosphate transporter family DD548_11740 PF01865 Protein of unknown function DUF47 DD548_11745 PF02687 FtsX-like permease family DD548_11750 PF00005 ABC transporter DD548_11755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_11760 PF00486 Transcriptional regulatory protein, C terminal DD548_11760 PF00072 Response regulator receiver domain DD548_11800 PF03610 PTS system fructose IIA component DD548_11805 PF02734 DAK2 domain DD548_11810 PF02733 Dak1 domain DD548_11815 PF01032 FecCD transport family DD548_11820 PF01032 FecCD transport family DD548_11825 PF00005 ABC transporter DD548_11830 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DD548_11830 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DD548_11840 PF01773 Na+ dependent nucleoside transporter N-terminus DD548_11840 PF07662 Na+ dependent nucleoside transporter C-terminus DD548_11845 PF00005 ABC transporter DD548_11845 PF00664 ABC transporter transmembrane region DD548_11850 PF07943 Penicillin-binding protein 5, C-terminal domain DD548_11850 PF00768 D-alanyl-D-alanine carboxypeptidase DD548_11855 PF01467 Cytidylyltransferase-like DD548_11860 PF00535 Glycosyl transferase family 2 DD548_11865 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DD548_11870 PF01061 ABC-2 type transporter DD548_11875 PF00005 ABC transporter DD548_11880 PF03808 Glycosyl transferase WecB/TagA/CpsF family DD548_11890 PF01325 Iron dependent repressor, N-terminal DNA binding domain DD548_11890 PF02742 Iron dependent repressor, metal binding and dimerisation domain DD548_11890 PF18357 Diphteria toxin repressor SH3 domain DD548_11895 PF00005 ABC transporter DD548_11900 PF00950 ABC 3 transport family DD548_11905 PF01297 Zinc-uptake complex component A periplasmic DD548_11910 PF00999 Sodium/hydrogen exchanger family DD548_11915 PF03334 Na+/H+ antiporter subunit DD548_11920 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DD548_11925 PF01899 Na+/H+ ion antiporter subunit DD548_11930 PF00361 Proton-conducting membrane transporter DD548_11935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DD548_11940 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DD548_11945 PF13244 Domain of unknown function (DUF4040) DD548_11945 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DD548_11945 PF00361 Proton-conducting membrane transporter DD548_11950 PF00589 Phage integrase family DD548_11990 PF00561 alpha/beta hydrolase fold DD548_11995 PF13419 Haloacid dehalogenase-like hydrolase DD548_12000 PF01032 FecCD transport family DD548_12005 PF01497 Periplasmic binding protein DD548_12020 PF00750 tRNA synthetases class I (R) DD548_12020 PF05746 DALR anticodon binding domain DD548_12020 PF03485 Arginyl tRNA synthetase N terminal domain DD548_12035 PF08240 Alcohol dehydrogenase GroES-like domain DD548_12035 PF00107 Zinc-binding dehydrogenase DD548_12040 PF08741 YwhD family DD548_12045 PF01966 HD domain DD548_12055 PF03358 NADPH-dependent FMN reductase DD548_12060 PF00248 Aldo/keto reductase family DD548_12150 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_12150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DD548_12155 PF07293 Protein of unknown function (DUF1450) DD548_12160 PF00288 GHMP kinases N terminal domain DD548_12160 PF08544 GHMP kinases C terminal DD548_12170 PF00288 GHMP kinases N terminal domain DD548_12170 PF08544 GHMP kinases C terminal DD548_12175 PF03099 Biotin/lipoate A/B protein ligase family DD548_12180 PF01515 Phosphate acetyl/butaryl transferase DD548_12210 PF04241 Protein of unknown function (DUF423) DD548_12220 PF03167 Uracil DNA glycosylase superfamily DD548_12225 PF08543 Phosphomethylpyrimidine kinase DD548_12230 PF17412 Family of unknown function DD548_12245 PF00108 Thiolase, N-terminal domain DD548_12245 PF02803 Thiolase, C-terminal domain DD548_12250 PF13193 AMP-binding enzyme C-terminal domain DD548_12250 PF00501 AMP-binding enzyme DD548_12260 PF07690 Major Facilitator Superfamily DD548_12270 PF01380 SIS domain DD548_12275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DD548_12280 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DD548_12290 PF02585 GlcNAc-PI de-N-acetylase DD548_12295 PF02649 Type I GTP cyclohydrolase folE2 DD548_12305 PF00534 Glycosyl transferases group 1 DD548_12310 PF17210 SdrD B-like domain DD548_12310 PF17961 Bacterial Ig domain DD548_12310 PF04650 YSIRK type signal peptide DD548_12310 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_12310 PF00746 LPXTG cell wall anchor motif DD548_12315 PF17210 SdrD B-like domain DD548_12315 PF17961 Bacterial Ig domain DD548_12315 PF00746 LPXTG cell wall anchor motif DD548_12315 PF04650 YSIRK type signal peptide DD548_12315 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_12320 PF04650 YSIRK type signal peptide DD548_12320 PF00746 LPXTG cell wall anchor motif DD548_12320 PF17961 Bacterial Ig domain DD548_12320 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_12320 PF17210 SdrD B-like domain DD548_12330 PF03358 NADPH-dependent FMN reductase DD548_12340 PF14437 MafB19-like deaminase DD548_12345 PF01712 Deoxynucleoside kinase DD548_12350 PF01712 Deoxynucleoside kinase DD548_12365 PF01063 Amino-transferase class IV DD548_12370 PF01370 NAD dependent epimerase/dehydratase family DD548_12375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DD548_12375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DD548_12380 PF01965 DJ-1/PfpI family DD548_12385 PF00155 Aminotransferase class I and II DD548_12390 PF01546 Peptidase family M20/M25/M40 DD548_12390 PF07687 Peptidase dimerisation domain DD548_12395 PF03143 Elongation factor Tu C-terminal domain DD548_12395 PF03144 Elongation factor Tu domain 2 DD548_12395 PF00009 Elongation factor Tu GTP binding domain DD548_12400 PF00009 Elongation factor Tu GTP binding domain DD548_12400 PF00679 Elongation factor G C-terminus DD548_12400 PF03764 Elongation factor G, domain IV DD548_12400 PF03144 Elongation factor Tu domain 2 DD548_12400 PF14492 Elongation Factor G, domain II DD548_12405 PF00177 Ribosomal protein S7p/S5e DD548_12410 PF00164 Ribosomal protein S12/S23 DD548_12415 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DD548_12420 PF04997 RNA polymerase Rpb1, domain 1 DD548_12420 PF00623 RNA polymerase Rpb1, domain 2 DD548_12420 PF05000 RNA polymerase Rpb1, domain 4 DD548_12420 PF04983 RNA polymerase Rpb1, domain 3 DD548_12420 PF04998 RNA polymerase Rpb1, domain 5 DD548_12425 PF04563 RNA polymerase beta subunit DD548_12425 PF04561 RNA polymerase Rpb2, domain 2 DD548_12425 PF04560 RNA polymerase Rpb2, domain 7 DD548_12425 PF04565 RNA polymerase Rpb2, domain 3 DD548_12425 PF10385 RNA polymerase beta subunit external 1 domain DD548_12425 PF00562 RNA polymerase Rpb2, domain 6 DD548_12430 PF05175 Methyltransferase small domain DD548_12435 PF00542 Ribosomal protein L7/L12 C-terminal domain DD548_12435 PF16320 Ribosomal protein L7/L12 dimerisation domain DD548_12440 PF00466 Ribosomal protein L10 DD548_12450 PF00687 Ribosomal protein L1p/L10e family DD548_12455 PF03946 Ribosomal protein L11, N-terminal domain DD548_12455 PF00298 Ribosomal protein L11, RNA binding domain DD548_12460 PF00467 KOW motif DD548_12460 PF02357 Transcription termination factor nusG DD548_12465 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DD548_12470 PF00471 Ribosomal protein L33 DD548_12485 PF08032 RNA 2'-O ribose methyltransferase substrate binding DD548_12485 PF00588 SpoU rRNA Methylase family DD548_12490 PF00636 Ribonuclease III domain DD548_12495 PF09190 DALR domain DD548_12495 PF01406 tRNA synthetases class I (C) catalytic domain DD548_12500 PF00132 Bacterial transferase hexapeptide (six repeats) DD548_12510 PF00749 tRNA synthetases class I (E and Q), catalytic domain DD548_12520 PF18073 Rubredoxin metal binding domain DD548_12525 PF00004 ATPase family associated with various cellular activities (AAA) DD548_12525 PF07724 AAA domain (Cdc48 subfamily) DD548_12525 PF17871 AAA lid domain DD548_12525 PF02861 Clp amino terminal domain, pathogenicity island component DD548_12525 PF10431 C-terminal, D2-small domain, of ClpB protein DD548_12530 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DD548_12535 PF02151 UvrB/uvrC motif DD548_12540 PF05848 CtsR N-terminal HTH domain DD548_12540 PF17727 CtsR C-terminal dimerization domain DD548_12545 PF07662 Na+ dependent nucleoside transporter C-terminus DD548_12545 PF01773 Na+ dependent nucleoside transporter N-terminus DD548_12550 PF01174 SNO glutamine amidotransferase family DD548_12555 PF01680 SOR/SNZ family DD548_12560 PF00155 Aminotransferase class I and II DD548_12560 PF00392 Bacterial regulatory proteins, gntR family DD548_12645 PF00152 tRNA synthetases class II (D, K and N) DD548_12645 PF01336 OB-fold nucleic acid binding domain DD548_12655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DD548_12660 PF02152 Dihydroneopterin aldolase DD548_12665 PF00809 Pterin binding enzyme DD548_12670 PF00291 Pyridoxal-phosphate dependent enzyme DD548_12675 PF01430 Hsp33 protein DD548_12680 PF01434 Peptidase family M41 DD548_12680 PF06480 FtsH Extracellular DD548_12680 PF17862 AAA+ lid domain DD548_12680 PF00004 ATPase family associated with various cellular activities (AAA) DD548_12690 PF01171 PP-loop family DD548_12690 PF11734 TilS substrate C-terminal domain DD548_12695 PF00575 S1 RNA binding domain DD548_12705 PF01479 S4 domain DD548_12710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DD548_12710 PF03819 MazG nucleotide pyrophosphohydrolase domain DD548_12715 PF14667 Polysaccharide biosynthesis C-terminal domain DD548_12715 PF01943 Polysaccharide biosynthesis protein DD548_12720 PF00271 Helicase conserved C-terminal domain DD548_12720 PF03461 TRCF domain DD548_12720 PF00270 DEAD/DEAH box helicase DD548_12720 PF17757 UvrB interaction domain DD548_12720 PF02559 CarD-like/TRCF domain DD548_12725 PF01195 Peptidyl-tRNA hydrolase DD548_12730 PF14693 Ribosomal protein TL5, C-terminal domain DD548_12730 PF01386 Ribosomal L25p family DD548_12740 PF14572 Phosphoribosyl synthetase-associated domain DD548_12740 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DD548_12745 PF00132 Bacterial transferase hexapeptide (six repeats) DD548_12745 PF00483 Nucleotidyl transferase DD548_12755 PF04026 SpoVG DD548_12760 PF01042 Endoribonuclease L-PSP DD548_12765 PF09182 Bacterial purine repressor, N-terminal DD548_12765 PF00156 Phosphoribosyl transferase domain DD548_12770 PF08544 GHMP kinases C terminal DD548_12770 PF00288 GHMP kinases N terminal domain DD548_12775 PF06257 Biofilm formation stimulator VEG DD548_12780 PF00398 Ribosomal RNA adenine dimethylase DD548_12785 PF01751 Toprim domain DD548_12785 PF13331 Domain of unknown function (DUF4093) DD548_12790 PF01026 TatD related DNase DD548_12795 PF08264 Anticodon-binding domain of tRNA DD548_12795 PF01588 Putative tRNA binding domain DD548_12795 PF09334 tRNA synthetases class I (M) DD548_12800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DD548_12805 PF01541 GIY-YIG catalytic domain DD548_12810 PF05175 Methyltransferase small domain DD548_12815 PF06156 Initiation control protein YabA DD548_12820 PF04468 PSP1 C-terminal conserved region DD548_12825 PF09115 DNA polymerase III, delta subunit, C terminal DD548_12830 PF06153 Cyclic-di-AMP receptor DD548_12835 PF02223 Thymidylate kinase DD548_12840 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DD548_12840 PF01276 Orn/Lys/Arg decarboxylase, major domain DD548_12865 PF02132 RecR protein DD548_12865 PF13662 Toprim domain DD548_12870 PF02575 YbaB/EbfC DNA-binding family DD548_12875 PF12169 DNA polymerase III subunits gamma and tau domain III DD548_12895 PF00392 Bacterial regulatory proteins, gntR family DD548_12895 PF07702 UTRA domain DD548_12900 PF16657 Maltogenic Amylase, C-terminal domain DD548_12900 PF00128 Alpha amylase, catalytic domain DD548_12905 PF02378 Phosphotransferase system, EIIC DD548_12905 PF00367 phosphotransferase system, EIIB DD548_12915 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_12915 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DD548_12920 PF01645 Conserved region in glutamate synthase DD548_12920 PF04898 Glutamate synthase central domain DD548_12920 PF00310 Glutamine amidotransferases class-II DD548_12920 PF01493 GXGXG motif DD548_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DD548_12925 PF03466 LysR substrate binding domain DD548_12955 PF01476 LysM domain DD548_12955 PF05257 CHAP domain DD548_12960 PF03180 NLPA lipoprotein DD548_12965 PF00528 Binding-protein-dependent transport system inner membrane component DD548_12970 PF00005 ABC transporter DD548_12970 PF09383 NIL domain DD548_12975 PF01053 Cys/Met metabolism PLP-dependent enzyme DD548_12980 PF00291 Pyridoxal-phosphate dependent enzyme DD548_12985 PF00209 Sodium:neurotransmitter symporter family DD548_12995 PF12146 Serine aminopeptidase, S33 DD548_13010 PF10057 Uncharacterized conserved protein (DUF2294) DD548_13015 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) DD548_13020 PF00361 Proton-conducting membrane transporter DD548_13020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DD548_13040 PF17063 Phenol-soluble modulin alpha 4 peptide DD548_13045 PF02492 CobW/HypB/UreG, nucleotide-binding domain DD548_13045 PF07683 Cobalamin synthesis protein cobW C-terminal domain DD548_13070 PF04507 Csa1 family DD548_13075 PF04507 Csa1 family DD548_13080 PF04507 Csa1 family DD548_13085 PF04507 Csa1 family DD548_13090 PF04507 Csa1 family DD548_13095 PF04507 Csa1 family DD548_13100 PF04507 Csa1 family DD548_13110 PF04507 Csa1 family DD548_13125 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13125 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13135 PF12161 HsdM N-terminal domain DD548_13135 PF02384 N-6 DNA Methylase DD548_13145 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13145 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13150 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13150 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13155 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13155 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13160 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13160 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13165 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13165 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13170 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13170 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13175 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13175 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13175 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13175 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13185 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13185 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13190 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13190 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13195 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain DD548_13195 PF09199 Staphylococcal superantigen-like OB-fold domain DD548_13205 PF06993 Protein of unknown function (DUF1304) DD548_13235 PF00958 GMP synthase C terminal domain DD548_13235 PF00117 Glutamine amidotransferase class-I DD548_13240 PF00478 IMP dehydrogenase / GMP reductase domain DD548_13240 PF00571 CBS domain DD548_13245 PF00860 Permease family DD548_13255 PF11181 Heat induced stress protein YflT DD548_13280 PF00375 Sodium:dicarboxylate symporter family DD548_13285 PF00881 Nitroreductase family DD548_13290 PF00578 AhpC/TSA family DD548_13290 PF10417 C-terminal domain of 1-Cys peroxiredoxin DD548_13295 PF07992 Pyridine nucleotide-disulphide oxidoreductase DD548_13295 PF13192 Thioredoxin domain DD548_13355 PF02899 Phage integrase, N-terminal SAM-like domain DD548_13355 PF00589 Phage integrase family DD548_13365 PF01084 Ribosomal protein S18 DD548_13370 PF00436 Single-strand binding protein family DD548_13375 PF01250 Ribosomal protein S6 DD548_13390 PF06071 Protein of unknown function (DUF933) DD548_13390 PF01926 50S ribosome-binding GTPase DD548_13395 PF06107 Bacterial protein of unknown function (DUF951) DD548_13400 PF00924 Mechanosensitive ion channel DD548_13405 PF02195 ParB-like nuclease domain DD548_13405 PF17762 HTH domain found in ParB protein DD548_13415 PF01053 Cys/Met metabolism PLP-dependent enzyme DD548_13420 PF01053 Cys/Met metabolism PLP-dependent enzyme DD548_13425 PF02219 Methylenetetrahydrofolate reductase DD548_13425 PF02574 Homocysteine S-methyltransferase DD548_13430 PF01717 Cobalamin-independent synthase, Catalytic domain DD548_13430 PF08267 Cobalamin-independent synthase, N-terminal domain DD548_13440 PF00108 Thiolase, N-terminal domain DD548_13440 PF02803 Thiolase, C-terminal domain DD548_13455 PF00005 ABC transporter DD548_13465 PF01381 Helix-turn-helix DD548_13475 PF02416 mttA/Hcf106 family DD548_13480 PF00902 Sec-independent protein translocase protein (TatC) DD548_13485 PF03239 Iron permease FTR1 family DD548_13490 PF04261 Dyp-type peroxidase family DD548_13495 PF09375 Imelysin DD548_13500 PF13302 Acetyltransferase (GNAT) domain DD548_13510 PF03601 Conserved hypothetical protein 698 DD548_13515 PF03358 NADPH-dependent FMN reductase DD548_13520 PF00296 Luciferase-like monooxygenase DD548_13525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DD548_13530 PF07690 Major Facilitator Superfamily DD548_13545 PF13610 DDE domain DD548_13580 PF01076 Plasmid recombination enzyme DD548_13585 PF01076 Plasmid recombination enzyme DD548_13590 PF01076 Plasmid recombination enzyme DD548_13595 PF00005 ABC transporter DD548_13595 PF02687 FtsX-like permease family DD548_13595 PF12704 MacB-like periplasmic core domain DD548_13615 PF01451 Low molecular weight phosphotyrosine protein phosphatase DD548_13620 PF02040 Arsenical pump membrane protein DD548_13625 PF01022 Bacterial regulatory protein, arsR family DD548_13640 PF13610 DDE domain DD548_13650 PF01022 Bacterial regulatory protein, arsR family DD548_13655 PF00403 Heavy-metal-associated domain DD548_13690 PF00746 LPXTG cell wall anchor motif DD548_13690 PF17041 E domain DD548_13690 PF04650 YSIRK type signal peptide DD548_13690 PF07501 G5 domain DD548_13695 PF13463 Winged helix DNA-binding domain DD548_13705 PF00483 Nucleotidyl transferase DD548_13710 PF04650 YSIRK type signal peptide DD548_13710 PF00746 LPXTG cell wall anchor motif DD548_13710 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_13710 PF17961 Bacterial Ig domain DD548_13710 PF02986 Fibronectin binding repeat DD548_13715 PF00746 LPXTG cell wall anchor motif DD548_13715 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_13715 PF04650 YSIRK type signal peptide DD548_13715 PF17961 Bacterial Ig domain DD548_13715 PF02986 Fibronectin binding repeat DD548_13730 PF02447 GntP family permease DD548_13735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DD548_13735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DD548_13740 PF07729 FCD domain DD548_13740 PF00392 Bacterial regulatory proteins, gntR family DD548_13745 PF13411 MerR HTH family regulatory protein DD548_13750 PF04607 Region found in RelA / SpoT proteins DD548_13755 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) DD548_13765 PF07690 Major Facilitator Superfamily DD548_13770 PF09335 SNARE associated Golgi protein DD548_13780 PF07690 Major Facilitator Superfamily DD548_13785 PF01047 MarR family DD548_13800 PF00005 ABC transporter DD548_13810 PF06874 Firmicute fructose-1,6-bisphosphatase DD548_13820 PF01738 Dienelactone hydrolase family DD548_13825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DD548_13830 PF01047 MarR family DD548_13840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DD548_13845 PF00881 Nitroreductase family DD548_13850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_13850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_13860 PF00005 ABC transporter DD548_13870 PF04203 Sortase domain DD548_13890 PF03313 Serine dehydratase alpha chain DD548_13895 PF01842 ACT domain DD548_13895 PF03315 Serine dehydratase beta chain DD548_13910 PF00892 EamA-like transporter family DD548_13915 PF00934 PE family DD548_13915 PF07859 alpha/beta hydrolase fold DD548_13935 PF02378 Phosphotransferase system, EIIC DD548_13935 PF00367 phosphotransferase system, EIIB DD548_13935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DD548_13940 PF00205 Thiamine pyrophosphate enzyme, central domain DD548_13940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DD548_13940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DD548_13945 PF04172 LrgB-like family DD548_13950 PF03788 LrgA family DD548_13955 PF03466 LysR substrate binding domain DD548_13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DD548_13965 PF05257 CHAP domain DD548_13985 PF00368 Hydroxymethylglutaryl-coenzyme A reductase DD548_13990 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DD548_13990 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DD548_13995 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DD548_13995 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DD548_14010 PF07664 Ferrous iron transport protein B C terminus DD548_14010 PF17910 FeoB cytosolic helical domain DD548_14010 PF02421 Ferrous iron transport protein B DD548_14010 PF07670 Nucleoside recognition DD548_14020 PF03176 MMPL family DD548_14035 PF00171 Aldehyde dehydrogenase family DD548_14040 PF12464 Maltose acetyltransferase DD548_14040 PF14602 Hexapeptide repeat of succinyl-transferase DD548_14040 PF00132 Bacterial transferase hexapeptide (six repeats) DD548_14050 PF00403 Heavy-metal-associated domain DD548_14055 PF00403 Heavy-metal-associated domain DD548_14060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DD548_14060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DD548_14065 PF00155 Aminotransferase class I and II DD548_14070 PF01593 Flavin containing amine oxidoreductase DD548_14080 PF00535 Glycosyl transferase family 2 DD548_14085 PF01593 Flavin containing amine oxidoreductase DD548_14100 PF01757 Acyltransferase family DD548_14110 PF01464 Transglycosylase SLT domain DD548_14135 PF05979 Bacterial protein of unknown function (DUF896) DD548_14155 PF00440 Bacterial regulatory proteins, tetR family DD548_14160 PF00106 short chain dehydrogenase DD548_14170 PF00561 alpha/beta hydrolase fold DD548_14175 PF07683 Cobalamin synthesis protein cobW C-terminal domain DD548_14175 PF02492 CobW/HypB/UreG, nucleotide-binding domain DD548_14215 PF01180 Dihydroorotate dehydrogenase DD548_14225 PF02677 Epoxyqueuosine reductase QueH DD548_14250 PF02261 Aspartate decarboxylase DD548_14255 PF02569 Pantoate-beta-alanine ligase DD548_14260 PF02548 Ketopantoate hydroxymethyltransferase DD548_14265 PF08546 Ketopantoate reductase PanE/ApbA C terminal DD548_14265 PF02558 Ketopantoate reductase PanE/ApbA DD548_14270 PF03306 Alpha-acetolactate decarboxylase DD548_14275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DD548_14275 PF00056 lactate/malate dehydrogenase, NAD binding domain DD548_14285 PF13520 Amino acid permease DD548_14290 PF00202 Aminotransferase class-III DD548_14300 PF00274 Fructose-bisphosphate aldolase class-I DD548_14305 PF06039 Malate:quinone oxidoreductase (Mqo) DD548_14315 PF13193 AMP-binding enzyme C-terminal domain DD548_14315 PF00501 AMP-binding enzyme DD548_14330 PF05199 GMC oxidoreductase DD548_14330 PF00732 GMC oxidoreductase DD548_14355 PF02028 BCCT, betaine/carnitine/choline family transporter DD548_14375 PF03477 ATP cone domain DD548_14375 PF13597 Anaerobic ribonucleoside-triphosphate reductase DD548_14380 PF03600 Citrate transporter DD548_14390 PF14824 Sirohaem biosynthesis protein central DD548_14395 PF00667 FAD binding domain DD548_14395 PF00258 Flavodoxin DD548_14395 PF00175 Oxidoreductase NAD-binding domain DD548_14405 PF00255 Glutathione peroxidase DD548_14430 PF00005 ABC transporter DD548_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DD548_14440 PF00486 Transcriptional regulatory protein, C terminal DD548_14440 PF00072 Response regulator receiver domain DD548_14450 PF00245 Alkaline phosphatase DD548_14460 PF01047 MarR family DD548_14470 PF00746 LPXTG cell wall anchor motif DD548_14470 PF04650 YSIRK type signal peptide DD548_14470 PF10425 C-terminus of bacterial fibrinogen-binding adhesin DD548_14470 PF17961 Bacterial Ig domain DD548_14475 PF00027 Cyclic nucleotide-binding domain DD548_14475 PF13545 Crp-like helix-turn-helix domain DD548_14480 PF00696 Amino acid kinase family DD548_14485 PF13520 Amino acid permease DD548_14490 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DD548_14490 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DD548_14505 PF01316 Arginine repressor, DNA binding domain DD548_14505 PF02863 Arginine repressor, C-terminal domain DD548_14510 PF03413 Peptidase propeptide and YPEB domain DD548_14510 PF02868 Thermolysin metallopeptidase, alpha-helical domain DD548_14510 PF01447 Thermolysin metallopeptidase, catalytic domain DD548_14510 PF07504 Fungalysin/Thermolysin Propeptide Motif DD548_14525 PF08279 HTH domain DD548_14525 PF05043 Mga helix-turn-helix domain DD548_14525 PF00874 PRD domain DD548_14525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DD548_14530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DD548_14530 PF02378 Phosphotransferase system, EIIC DD548_14530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DD548_14535 PF01238 Phosphomannose isomerase type I DD548_14540 PF01061 ABC-2 type transporter DD548_14545 PF05257 CHAP domain DD548_14545 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DD548_14550 PF00857 Isochorismatase family DD548_14550 PF00550 Phosphopantetheine attachment site DD548_14555 PF01468 GA module DD548_14565 PF00534 Glycosyl transferases group 1 DD548_14570 PF01043 SecA preprotein cross-linking domain DD548_14570 PF07516 SecA Wing and Scaffold domain DD548_14570 PF07517 SecA DEAD-like domain DD548_14575 PF15432 Accessory Sec secretory system ASP3 DD548_14580 PF16929 Accessory Sec system GspB-transporter DD548_14585 PF16993 Accessory Sec system protein Asp1 DD548_14590 PF00344 SecY translocase DD548_14595 PF00746 LPXTG cell wall anchor motif DD548_14600 PF01613 Flavin reductase like domain DD548_14620 PF01613 Flavin reductase like domain DD548_14625 PF01641 SelR domain DD548_14625 PF01625 Peptide methionine sulfoxide reductase DD548_14640 PF13614 AAA domain DD548_14645 PF02706 Chain length determinant protein DD548_14650 PF00440 Bacterial regulatory proteins, tetR family DD548_14650 PF18665 Tetracyclin repressor-like, C-terminal domain DD548_14655 PF00535 Glycosyl transferase family 2 DD548_14665 PF01522 Polysaccharide deacetylase DD548_14670 PF01757 Acyltransferase family DD548_14675 PF04650 YSIRK type signal peptide DD548_14685 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DD548_14685 PF01502 Phosphoribosyl-AMP cyclohydrolase DD548_14690 PF00977 Histidine biosynthesis protein DD548_14695 PF00977 Histidine biosynthesis protein DD548_14700 PF00117 Glutamine amidotransferase class-I DD548_14705 PF00475 Imidazoleglycerol-phosphate dehydratase DD548_14710 PF00155 Aminotransferase class I and II DD548_14715 PF00815 Histidinol dehydrogenase DD548_14720 PF01634 ATP phosphoribosyltransferase DD548_14725 PF13393 Histidyl-tRNA synthetase DD548_14745 PF00005 ABC transporter DD548_14745 PF12558 ATP-binding cassette cobalt transporter DD548_14750 PF07155 ECF-type riboflavin transporter, S component DD548_14760 PF04264 YceI-like domain DD548_14765 PF08450 SMP-30/Gluconolactonase/LRE-like region DD548_14775 PF01470 Pyroglutamyl peptidase DD548_14795 PF00939 Sodium:sulfate symporter transmembrane region DD548_14800 PF00892 EamA-like transporter family DD548_14810 PF03824 High-affinity nickel-transport protein DD548_14815 PF00797 N-acetyltransferase DD548_14825 PF00005 ABC transporter DD548_14830 PF02687 FtsX-like permease family DD548_14865 PF00313 'Cold-shock' DNA-binding domain DD548_14885 PF02195 ParB-like nuclease domain DD548_14885 PF17762 HTH domain found in ParB protein DD548_14890 PF02527 rRNA small subunit methyltransferase G DD548_14895 PF01134 Glucose inhibited division protein A DD548_14895 PF13932 GidA associated domain DD548_14900 PF10396 GTP-binding protein TrmE N-terminus DD548_14900 PF12631 MnmE helical domain DD548_14900 PF01926 50S ribosome-binding GTPase DD548_14905 PF00825 Ribonuclease P DD548_14910 PF00468 Ribosomal protein L34