DD548_00005 SM00382 ATPases associated with a variety of cellular activities DD548_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain DD548_00010 SM00480 DNA polymerase III beta subunit DD548_00025 SM00387 Histidine kinase-like ATPases DD548_00025 SM00433 TopoisomeraseII DD548_00030 SM00434 DNA Topoisomerase IV DD548_00075 SM00267 diguanylate cyclase DD548_00095 SM00788 Adenylosuccinate synthetase DD548_00110 SM00448 cheY-homologous receiver domain DD548_00110 SM00862 Transcriptional regulatory protein, C terminal DD548_00115 SM00091 PAS domain DD548_00115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DD548_00115 SM00387 Histidine kinase-like ATPases DD548_00115 SM00388 His Kinase A (phosphoacceptor) domain DD548_00130 SM00849 Metallo-beta-lactamase superfamily DD548_00180 SM00450 Rhodanese Homology Domain DD548_00185 SM00450 Rhodanese Homology Domain DD548_00185 SM00849 Metallo-beta-lactamase superfamily DD548_00260 SM00148 Phospholipase C, catalytic domain (part); domain X DD548_00285 SM00342 helix_turn_helix, arabinose operon control protein DD548_00315 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_00330 SM00257 Lysin motif DD548_00340 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_00400 SM00470 ParB-like nuclease domain DD548_00465 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_00485 SM01133 DD548_00485 DD548_00505 SM00382 ATPases associated with a variety of cellular activities DD548_00510 SM00062 Bacterial periplasmic substrate-binding proteins DD548_00630 SM00984 UDP binding domain DD548_00670 SM00382 ATPases associated with a variety of cellular activities DD548_00730 SM00859 Semialdehyde dehydrogenase, NAD binding domain DD548_00790 SM00487 DEAD-like helicases superfamily DD548_00810 SM00382 ATPases associated with a variety of cellular activities DD548_00850 SM00382 ATPases associated with a variety of cellular activities DD548_00895 SM00342 helix_turn_helix, arabinose operon control protein DD548_00895 SM00448 cheY-homologous receiver domain DD548_00965 SM00882 Coenzyme A transferase DD548_01050 SM00829 Enoylreductase DD548_01060 SM00829 Enoylreductase DD548_01110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DD548_01110 SM00387 Histidine kinase-like ATPases DD548_01115 SM00448 cheY-homologous receiver domain DD548_01115 SM00850 LytTr DNA-binding domain DD548_01130 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_01130 SM00866 DD548_01130 DD548_01180 SM00354 helix_turn _helix lactose operon repressor DD548_01215 SM00382 ATPases associated with a variety of cellular activities DD548_01420 SM00382 ATPases associated with a variety of cellular activities DD548_01455 SM01130 DD548_01455 DD548_01510 SM00506 Appr-1"-p processing enzyme DD548_01555 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_01595 SM00857 Resolvase, N terminal domain DD548_01625 SM00487 DEAD-like helicases superfamily DD548_01625 SM00490 helicase superfamily c-terminal domain DD548_01760 SM00382 ATPases associated with a variety of cellular activities DD548_01765 SM00382 ATPases associated with a variety of cellular activities DD548_01810 SM00382 ATPases associated with a variety of cellular activities DD548_01855 SM00116 Domain in cystathionine beta-synthase and other proteins. DD548_01855 SM00382 ATPases associated with a variety of cellular activities DD548_01935 SM00871 Bacterial transcription activator, effector binding domain DD548_01970 SM00382 ATPases associated with a variety of cellular activities DD548_01975 SM00382 ATPases associated with a variety of cellular activities DD548_02000 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_02000 SM00876 Biotin and Thiamin Synthesis associated domain DD548_02060 SM00855 Phosphoglycerate mutase family DD548_02080 SM00062 Bacterial periplasmic substrate-binding proteins DD548_02080 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DD548_02090 SM00382 ATPases associated with a variety of cellular activities DD548_02175 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DD548_02200 SM00387 Histidine kinase-like ATPases DD548_02205 SM00421 helix_turn_helix, Lux Regulon DD548_02205 SM00448 cheY-homologous receiver domain DD548_02210 SM00422 helix_turn_helix, mercury resistance DD548_02230 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_02255 SM00342 helix_turn_helix, arabinose operon control protein DD548_02310 SM00829 Enoylreductase DD548_02345 SM00850 LytTr DNA-binding domain DD548_02350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DD548_02350 SM00387 Histidine kinase-like ATPases DD548_02350 SM00388 His Kinase A (phosphoacceptor) domain DD548_02355 SM00448 cheY-homologous receiver domain DD548_02355 SM00862 Transcriptional regulatory protein, C terminal DD548_02365 SM00382 ATPases associated with a variety of cellular activities DD548_02380 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_02470 SM00382 ATPases associated with a variety of cellular activities DD548_02625 SM00420 helix_turn_helix, Deoxyribose operon repressor DD548_02640 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DD548_02640 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DD548_02655 SM00047 Lysozyme subfamily 2 DD548_02705 SM00342 helix_turn_helix, arabinose operon control protein DD548_02745 SM00988 UreE urease accessory protein, N-terminal domain DD548_02815 SM00382 ATPases associated with a variety of cellular activities DD548_02825 SM00852 Probable molybdopterin binding domain DD548_02835 SM00852 Probable molybdopterin binding domain DD548_02860 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_02885 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_02945 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DD548_02945 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DD548_02945 SM00493 DD548_02945 DD548_02960 SM01403 DD548_02960 DD548_02980 SM01382 DD548_02980 DD548_02980 SM01383 DD548_02980 DD548_02995 SM00322 K homology RNA-binding domain DD548_03015 SM01374 DD548_03015 DD548_03020 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DD548_03075 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_03095 SM00662 RNA polymerases D DD548_03105 SM00382 ATPases associated with a variety of cellular activities DD548_03110 SM00382 ATPases associated with a variety of cellular activities DD548_03150 SM00382 ATPases associated with a variety of cellular activities DD548_03205 SM00422 helix_turn_helix, mercury resistance DD548_03235 SM00420 helix_turn_helix, Deoxyribose operon repressor DD548_03235 SM01134 DD548_03235 DD548_03255 SM01133 DD548_03255 DD548_03280 SM00829 Enoylreductase DD548_03285 SM00829 Enoylreductase DD548_03515 SM00382 ATPases associated with a variety of cellular activities DD548_03560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DD548_03600 SM01133 DD548_03600 DD548_03610 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DD548_03685 SM00357 Cold shock protein domain DD548_03685 SM00382 ATPases associated with a variety of cellular activities DD548_03685 SM00959 Rho termination factor, N-terminal domain DD548_03705 SM00937 DD548_03705 DD548_03720 SM00226 Low molecular weight phosphatase family DD548_03780 SM00382 ATPases associated with a variety of cellular activities DD548_03865 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DD548_03870 SM00155 Phospholipase D. Active site motifs. DD548_03905 SM00487 DEAD-like helicases superfamily DD548_03905 SM00490 helicase superfamily c-terminal domain DD548_03910 SM00448 cheY-homologous receiver domain DD548_03910 SM00862 Transcriptional regulatory protein, C terminal DD548_03915 SM00387 Histidine kinase-like ATPases DD548_03915 SM00388 His Kinase A (phosphoacceptor) domain DD548_03960 SM01005 Alanine racemase, C-terminal domain DD548_03980 SM00331 Sigma factor PP2C-like phosphatases DD548_03980 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DD548_04000 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_04000 SM00732 Likely ribonuclease with RNase H fold. DD548_04005 SM00731 SprT homologues. DD548_04055 SM01329 DD548_04055 DD548_04060 SM00917 LeuA allosteric (dimerisation) domain DD548_04110 SM00534 ATPase domain of DNA mismatch repair MUTS family DD548_04120 SM00382 ATPases associated with a variety of cellular activities DD548_04125 SM00881 CoA binding domain DD548_04145 SM00354 helix_turn _helix lactose operon repressor DD548_04150 SM00640 Glycosyl hydrolases family 32 DD548_04165 SM00448 cheY-homologous receiver domain DD548_04165 SM00850 LytTr DNA-binding domain DD548_04175 SM00794 Staphylococcal AgrD protein DD548_04180 SM00793 Accessory gene regulator B DD548_04210 SM00883 Chaperonin 10 Kd subunit DD548_04225 SM00530 Helix-turn-helix XRE-family like proteins DD548_04230 SM00530 Helix-turn-helix XRE-family like proteins DD548_04260 SM00942 Primase C terminal 1 (PriCT-1) DD548_04390 SM00910 DD548_04390 DD548_04395 SM00530 Helix-turn-helix XRE-family like proteins DD548_04405 SM01040 BRO family, N-terminal domain DD548_04565 SM00507 HNH nucleases DD548_04625 SM00635 Bacterial Ig-like domain 2 DD548_04705 SM00287 Bacterial SH3 domain homologues DD548_04755 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_04760 SM00382 ATPases associated with a variety of cellular activities DD548_04770 SM00382 ATPases associated with a variety of cellular activities DD548_04875 SM01131 DD548_04875 DD548_04885 SM00710 Parallel beta-helix repeats DD548_04945 SM00998 Adenylosuccinate lyase C-terminus DD548_04965 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DD548_04965 SM00292 breast cancer carboxy-terminal domain DD548_04965 SM00532 Ligase N family DD548_04990 SM00845 GatB domain DD548_05005 SM00046 Diacylglycerol kinase catalytic domain (presumed) DD548_05025 SM00479 DD548_05025 DD548_05095 SM00387 Histidine kinase-like ATPases DD548_05100 SM00421 helix_turn_helix, Lux Regulon DD548_05100 SM00448 cheY-homologous receiver domain DD548_05115 SM00226 Low molecular weight phosphatase family DD548_05155 SM00530 Helix-turn-helix XRE-family like proteins DD548_05420 SM00047 Lysozyme subfamily 2 DD548_05440 SM00287 Bacterial SH3 domain homologues DD548_05440 SM00644 DD548_05440 DD548_05500 SM00478 endonuclease III DD548_05510 SM00382 ATPases associated with a variety of cellular activities DD548_05710 SM00062 Bacterial periplasmic substrate-binding proteins DD548_05715 SM00382 ATPases associated with a variety of cellular activities DD548_05770 SM00421 helix_turn_helix, Lux Regulon DD548_05770 SM00448 cheY-homologous receiver domain DD548_05775 SM00530 Helix-turn-helix XRE-family like proteins DD548_05810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DD548_05840 SM00382 ATPases associated with a variety of cellular activities DD548_05975 SM01260 DD548_05975 DD548_05990 SM00382 ATPases associated with a variety of cellular activities DD548_06145 SM00894 Excalibur calcium-binding domain DD548_06165 SM01234 DD548_06165 DD548_06180 SM01321 DD548_06180 DD548_06255 SM00047 Lysozyme subfamily 2 DD548_06260 SM00226 Low molecular weight phosphatase family DD548_06270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DD548_06325 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_06335 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_06350 SM00450 Rhodanese Homology Domain DD548_06370 SM00363 S4 RNA-binding domain DD548_06405 SM00849 Metallo-beta-lactamase superfamily DD548_06435 SM00843 DD548_06435 DD548_06460 SM00830 Chorismate mutase type II DD548_06470 SM00354 helix_turn _helix lactose operon repressor DD548_06500 SM00725 NEAr Transporter domain DD548_06515 SM00363 S4 RNA-binding domain DD548_06520 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DD548_06525 SM00563 Phosphate acyltransferases DD548_06570 SM00363 S4 RNA-binding domain DD548_06570 SM01390 DD548_06570 DD548_06580 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DD548_06600 SM00981 DD548_06600 DD548_06630 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DD548_06630 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DD548_06645 SM00849 Metallo-beta-lactamase superfamily DD548_06655 SM00116 Domain in cystathionine beta-synthase and other proteins. DD548_06670 SM00481 DNA polymerase alpha chain like domain DD548_06675 SM00919 Malic enzyme, NAD binding domain DD548_06675 SM01274 DD548_06675 DD548_06715 SM01329 DD548_06715 DD548_06725 SM00448 cheY-homologous receiver domain DD548_06725 SM00862 Transcriptional regulatory protein, C terminal DD548_06730 SM00387 Histidine kinase-like ATPases DD548_06730 SM00388 His Kinase A (phosphoacceptor) domain DD548_06740 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DD548_06740 SM00474 3'-5' exonuclease DD548_06740 SM00475 5'-3' exonuclease DD548_06740 SM00482 DNA polymerase A domain DD548_06745 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DD548_06745 SM01232 DD548_06745 DD548_06755 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DD548_06780 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DD548_06830 SM00382 ATPases associated with a variety of cellular activities DD548_06830 SM00994 ClpX C4-type zinc finger DD548_06830 SM01086 C-terminal, D2-small domain, of ClpB protein DD548_06860 SM01004 Delta-aminolevulinic acid dehydratase DD548_06965 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DD548_06970 SM00382 ATPases associated with a variety of cellular activities DD548_06985 SM01323 DD548_06985 DD548_07005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DD548_07005 SM00954 Region found in RelA / SpoT proteins DD548_07015 SM00287 Bacterial SH3 domain homologues DD548_07015 SM00646 DD548_07015 DD548_07045 SM00382 ATPases associated with a variety of cellular activities DD548_07080 SM00028 Tetratricopeptide repeats DD548_07085 SM00382 ATPases associated with a variety of cellular activities DD548_07090 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DD548_07100 SM00732 Likely ribonuclease with RNase H fold. DD548_07140 SM00797 Allophanate hydrolase subunit 2 DD548_07200 SM01103 DD548_07200 DD548_07210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DD548_07225 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DD548_07235 SM00849 Metallo-beta-lactamase superfamily DD548_07250 SM00838 Elongation factor G C-terminus DD548_07260 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_07280 SM00271 DnaJ molecular chaperone homology domain DD548_07295 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_07355 SM00116 Domain in cystathionine beta-synthase and other proteins. DD548_07365 SM00400 zinc finger DD548_07365 SM00493 DD548_07365 DD548_07385 SM00487 DEAD-like helicases superfamily DD548_07385 SM00490 helicase superfamily c-terminal domain DD548_07390 SM00518 AP endonuclease family 2 DD548_07395 SM00382 ATPases associated with a variety of cellular activities DD548_07450 SM00849 Metallo-beta-lactamase superfamily DD548_07510 SM00450 Rhodanese Homology Domain DD548_07535 SM00841 Elongation factor P, C-terminal DD548_07535 SM01185 DD548_07535 DD548_07545 SM00878 Biotin carboxylase C-terminal domain DD548_07595 SM00861 Transketolase, pyrimidine binding domain DD548_07625 SM01350 DD548_07625 DD548_07640 SM00354 helix_turn _helix lactose operon repressor DD548_07645 SM00642 Alpha-amylase domain DD548_07650 SM00342 helix_turn_helix, arabinose operon control protein DD548_07650 SM00871 Bacterial transcription activator, effector binding domain DD548_07715 SM00363 S4 RNA-binding domain DD548_07720 SM00448 cheY-homologous receiver domain DD548_07720 SM00862 Transcriptional regulatory protein, C terminal DD548_07725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DD548_07725 SM00387 Histidine kinase-like ATPases DD548_07725 SM00388 His Kinase A (phosphoacceptor) domain DD548_07780 SM00487 DEAD-like helicases superfamily DD548_07780 SM00490 helicase superfamily c-terminal domain DD548_07785 SM00257 Lysin motif DD548_07800 SM00870 DD548_07800 DD548_07825 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_07840 SM00411 bacterial (prokaryotic) histone like domain DD548_07865 SM00562 DD548_07865 DD548_07890 SM00028 Tetratricopeptide repeats DD548_07895 SM00914 DD548_07895 DD548_07930 SM00479 DD548_07930 DD548_07930 SM00491 DD548_07930 DD548_07945 SM00478 endonuclease III DD548_07945 SM00525 DD548_07945 DD548_07995 SM00981 DD548_07995 DD548_08015 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DD548_08015 SM00475 5'-3' exonuclease DD548_08020 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DD548_08020 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DD548_08065 SM00932 Scaffold protein Nfu/NifU N terminal DD548_08070 SM00567 E-Z type HEAT repeats DD548_08070 SM00932 Scaffold protein Nfu/NifU N terminal DD548_08115 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DD548_08115 SM00245 tail specific protease DD548_08130 SM00014 Acid phosphatase homologues DD548_08145 SM00448 cheY-homologous receiver domain DD548_08145 SM00862 Transcriptional regulatory protein, C terminal DD548_08150 SM00387 Histidine kinase-like ATPases DD548_08150 SM00388 His Kinase A (phosphoacceptor) domain DD548_08155 SM00861 Transketolase, pyrimidine binding domain DD548_08180 SM00327 von Willebrand factor (vWF) type A domain DD548_08220 SM00357 Cold shock protein domain DD548_08235 SM01005 Alanine racemase, C-terminal domain DD548_08255 SM01130 DD548_08255 DD548_08260 SM00859 Semialdehyde dehydrogenase, NAD binding domain DD548_08270 SM00382 ATPases associated with a variety of cellular activities DD548_08300 SM00382 ATPases associated with a variety of cellular activities DD548_08335 SM00382 ATPases associated with a variety of cellular activities DD548_08340 SM00382 ATPases associated with a variety of cellular activities DD548_08450 SM01061 CAT RNA binding domain DD548_08465 SM00434 DNA Topoisomerase IV DD548_08470 SM00387 Histidine kinase-like ATPases DD548_08470 SM00433 TopoisomeraseII DD548_08475 SM01207 DD548_08475 DD548_08545 SM00861 Transketolase, pyrimidine binding domain DD548_08575 SM01240 DD548_08575 DD548_08590 SM01060 DD548_08590 DD548_08645 SM00318 Staphylococcal nuclease homologues DD548_08655 SM00421 helix_turn_helix, Lux Regulon DD548_08655 SM00448 cheY-homologous receiver domain DD548_08670 SM00382 ATPases associated with a variety of cellular activities DD548_08675 SM00155 Phospholipase D. Active site motifs. DD548_08785 SM01230 DD548_08785 DD548_08790 SM00422 helix_turn_helix, mercury resistance DD548_08845 SM00853 MutL C terminal dimerisation domain DD548_08845 SM01340 DD548_08845 DD548_08850 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DD548_08850 SM00534 ATPase domain of DNA mismatch repair MUTS family DD548_08865 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_08895 SM00322 K homology RNA-binding domain DD548_08895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DD548_08900 SM00382 ATPases associated with a variety of cellular activities DD548_08905 SM00852 Probable molybdopterin binding domain DD548_08915 SM00530 Helix-turn-helix XRE-family like proteins DD548_08940 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_08940 SM00866 DD548_08940 DD548_08945 SM00382 ATPases associated with a variety of cellular activities DD548_08945 SM00843 DD548_08945 DD548_08950 SM00849 Metallo-beta-lactamase superfamily DD548_08960 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_08960 SM00322 K homology RNA-binding domain DD548_08965 SM01387 DD548_08965 DD548_08970 SM00904 Riboflavin kinase DD548_09000 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_09000 SM00322 K homology RNA-binding domain DD548_09015 SM00479 DD548_09015 DD548_09015 SM00481 DNA polymerase alpha chain like domain DD548_09075 SM00382 ATPases associated with a variety of cellular activities DD548_09075 SM01086 C-terminal, D2-small domain, of ClpB protein DD548_09095 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DD548_09095 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DD548_09095 SM00493 DD548_09095 DD548_09110 SM00257 Lysin motif DD548_09115 SM00881 CoA binding domain DD548_09160 SM00382 ATPases associated with a variety of cellular activities DD548_09160 SM00962 SRP54-type protein, GTPase domain DD548_09160 SM00963 SRP54-type protein, helical bundle domain DD548_09170 SM00382 ATPases associated with a variety of cellular activities DD548_09170 SM00962 SRP54-type protein, GTPase domain DD548_09170 SM00963 SRP54-type protein, helical bundle domain DD548_09175 SM00968 SMC proteins Flexible Hinge Domain DD548_09180 SM00358 Double-stranded RNA binding motif DD548_09180 SM00535 Ribonuclease III family DD548_09195 SM00822 DD548_09195 DD548_09200 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DD548_09215 SM00487 DEAD-like helicases superfamily DD548_09215 SM00490 helicase superfamily c-terminal domain DD548_09220 SM01120 DD548_09220 DD548_09220 SM01121 DD548_09220 DD548_09235 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain DD548_09250 SM00220 Serine/Threonine protein kinases, catalytic domain DD548_09250 SM00740 DD548_09250 DD548_09255 SM00331 Sigma factor PP2C-like phosphatases DD548_09255 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DD548_09290 SM00487 DEAD-like helicases superfamily DD548_09290 SM00490 helicase superfamily c-terminal domain DD548_09300 SM01409 DD548_09300 DD548_09305 SM00072 Guanylate kinase homologues. DD548_09330 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DD548_09335 SM00851 MGS-like domain DD548_09335 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DD548_09335 SM01209 DD548_09335 DD548_09340 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DD548_09365 SM00363 S4 RNA-binding domain DD548_09400 SM00363 S4 RNA-binding domain DD548_09425 SM00864 Tubulin/FtsZ family, GTPase domain DD548_09425 SM00865 Tubulin/FtsZ family, C-terminal domain DD548_09430 SM00842 Cell division protein FtsA DD548_09450 SM00740 DD548_09450 DD548_09645 SM00465 GIY-YIG type nucleases (URI domain) DD548_09660 SM00463 Small MutS-related domain DD548_09660 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DD548_09660 SM00534 ATPase domain of DNA mismatch repair MUTS family DD548_09665 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DD548_09665 SM00481 DNA polymerase alpha chain like domain DD548_09665 SM00483 DNA polymerase X family DD548_09690 SM00873 B3/4 domain DD548_09690 SM00874 tRNA synthetase B5 domain DD548_09690 SM00896 Ferredoxin-fold anticodon binding domain DD548_09700 SM00967 RNA 2'-O ribose methyltransferase substrate binding DD548_09735 SM00725 NEAr Transporter domain DD548_09740 SM00725 NEAr Transporter domain DD548_09745 SM00725 NEAr Transporter domain DD548_09825 SM00878 Biotin carboxylase C-terminal domain DD548_09850 SM00838 Elongation factor G C-terminus DD548_09900 SM00382 ATPases associated with a variety of cellular activities DD548_09905 SM00530 Helix-turn-helix XRE-family like proteins DD548_09925 SM00861 Transketolase, pyrimidine binding domain DD548_09955 SM00849 Metallo-beta-lactamase superfamily DD548_10025 SM00382 ATPases associated with a variety of cellular activities DD548_10035 SM01209 DD548_10035 DD548_10035 SM01210 DD548_10035 DD548_10040 SM00798 AICARFT/IMPCHase bienzyme DD548_10040 SM00851 MGS-like domain DD548_10065 SM01211 DD548_10065 DD548_10085 SM01001 AIR carboxylase DD548_10145 SM00047 Lysozyme subfamily 2 DD548_10145 SM00644 DD548_10145 DD548_10155 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_10255 SM00382 ATPases associated with a variety of cellular activities DD548_10300 SM00914 DD548_10300 DD548_10330 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DD548_10395 SM00116 Domain in cystathionine beta-synthase and other proteins. DD548_10395 SM00924 MgtE intracellular N domain DD548_10410 SM00954 Region found in RelA / SpoT proteins DD548_10420 SM01118 DD548_10420 DD548_10470 SM00382 ATPases associated with a variety of cellular activities DD548_10475 SM00382 ATPases associated with a variety of cellular activities DD548_10490 SM00382 ATPases associated with a variety of cellular activities DD548_10495 SM00382 ATPases associated with a variety of cellular activities DD548_10515 SM00825 Beta-ketoacyl synthase DD548_10560 SM00382 ATPases associated with a variety of cellular activities DD548_10560 SM01086 C-terminal, D2-small domain, of ClpB protein DD548_10645 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DD548_10660 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_10670 SM01298 DD548_10670 DD548_10815 SM00729 Elongator protein 3, MiaB family, Radical SAM DD548_10885 SM00382 ATPases associated with a variety of cellular activities DD548_10910 SM00382 ATPases associated with a variety of cellular activities DD548_10910 SM00930 DD548_10910 DD548_10920 SM00493 DD548_10920 DD548_10980 SM00855 Phosphoglycerate mutase family DD548_11020 SM00357 Cold shock protein domain DD548_11025 SM00318 Staphylococcal nuclease homologues DD548_11095 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_11095 SM00357 Cold shock protein domain DD548_11095 SM00955 DD548_11095 DD548_11115 SM01192 DD548_11115 DD548_11115 SM01193 DD548_11115 DD548_11135 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DD548_11190 SM00028 Tetratricopeptide repeats DD548_11215 SM00487 DEAD-like helicases superfamily DD548_11215 SM00490 helicase superfamily c-terminal domain DD548_11230 SM00257 Lysin motif DD548_11250 SM00957 SecA DEAD-like domain DD548_11250 SM00958 SecA preprotein cross-linking domain DD548_11265 SM00487 DEAD-like helicases superfamily DD548_11265 SM00490 helicase superfamily c-terminal domain DD548_11285 SM00267 diguanylate cyclase DD548_11340 SM00382 ATPases associated with a variety of cellular activities DD548_11410 SM00046 Diacylglycerol kinase catalytic domain (presumed) DD548_11435 SM00382 ATPases associated with a variety of cellular activities DD548_11440 SM00341 Helicase and RNase D C-terminal DD548_11440 SM00487 DEAD-like helicases superfamily DD548_11440 SM00490 helicase superfamily c-terminal domain DD548_11440 SM00956 DD548_11440 DD548_11445 SM00382 ATPases associated with a variety of cellular activities DD548_11455 SM00797 Allophanate hydrolase subunit 2 DD548_11460 SM00796 Allophanate hydrolase subunit 1 DD548_11515 SM00448 cheY-homologous receiver domain DD548_11515 SM00862 Transcriptional regulatory protein, C terminal DD548_11520 SM00387 Histidine kinase-like ATPases DD548_11520 SM00388 His Kinase A (phosphoacceptor) domain DD548_11535 SM01091 Transporter associated domain DD548_11555 SM00420 helix_turn_helix, Deoxyribose operon repressor DD548_11555 SM01134 DD548_11555 DD548_11610 SM00833 Cobalamin synthesis protein cobW C-terminal domain DD548_11615 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_11620 SM00382 ATPases associated with a variety of cellular activities DD548_11625 SM00382 ATPases associated with a variety of cellular activities DD548_11715 SM00342 helix_turn_helix, arabinose operon control protein DD548_11730 SM00257 Lysin motif DD548_11750 SM00382 ATPases associated with a variety of cellular activities DD548_11755 SM00387 Histidine kinase-like ATPases DD548_11760 SM00448 cheY-homologous receiver domain DD548_11760 SM00862 Transcriptional regulatory protein, C terminal DD548_11805 SM01120 DD548_11805 DD548_11825 SM00382 ATPases associated with a variety of cellular activities DD548_11845 SM00382 ATPases associated with a variety of cellular activities DD548_11875 SM00382 ATPases associated with a variety of cellular activities DD548_11890 SM00529 Helix-turn-helix diphteria tox regulatory element DD548_11890 SM00899 DD548_11890 DD548_11895 SM00382 ATPases associated with a variety of cellular activities DD548_12010 SM00478 endonuclease III DD548_12020 SM00836 DALR anticodon binding domain DD548_12020 SM01016 Arginyl tRNA synthetase N terminal dom DD548_12035 SM00829 Enoylreductase DD548_12045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DD548_12220 SM00986 Uracil DNA glycosylase superfamily DD548_12220 SM00987 UreE urease accessory protein, C-terminal domain DD548_12275 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DD548_12400 SM00838 Elongation factor G C-terminus DD548_12400 SM00889 Elongation factor G, domain IV DD548_12420 SM00663 RNA polymerase I subunit A N-terminus DD548_12455 SM00649 Ribosomal protein L11/L12 DD548_12460 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DD548_12460 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DD548_12485 SM00967 RNA 2'-O ribose methyltransferase substrate binding DD548_12490 SM00535 Ribonuclease III family DD548_12495 SM00840 DD548_12495 DD548_12515 SM00670 Large family of predicted nucleotide-binding domains DD548_12520 SM00382 ATPases associated with a variety of cellular activities DD548_12525 SM00382 ATPases associated with a variety of cellular activities DD548_12525 SM01086 C-terminal, D2-small domain, of ClpB protein DD548_12560 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_12660 SM00905 Dihydroneopterin aldolase DD548_12680 SM00382 ATPases associated with a variety of cellular activities DD548_12690 SM00977 TilS substrate C-terminal domain DD548_12695 SM00316 Ribosomal protein S1-like RNA-binding domain DD548_12705 SM00363 S4 RNA-binding domain DD548_12720 SM00487 DEAD-like helicases superfamily DD548_12720 SM00490 helicase superfamily c-terminal domain DD548_12720 SM00982 DD548_12720 DD548_12720 SM01058 CarD-like/TRCF domain DD548_12740 SM01400 DD548_12740 DD548_12780 SM00650 Ribosomal RNA adenine dimethylases DD548_12785 SM00493 DD548_12785 DD548_12805 SM00465 GIY-YIG type nucleases (URI domain) DD548_12865 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DD548_12865 SM00493 DD548_12865 DD548_12875 SM00382 ATPases associated with a variety of cellular activities DD548_12895 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_12895 SM00866 DD548_12895 DD548_12900 SM00642 Alpha-amylase domain DD548_12955 SM00257 Lysin motif DD548_12970 SM00382 ATPases associated with a variety of cellular activities DD548_12970 SM00930 DD548_12970 DD548_13000 SM00014 Acid phosphatase homologues DD548_13045 SM00833 Cobalamin synthesis protein cobW C-terminal domain DD548_13240 SM00116 Domain in cystathionine beta-synthase and other proteins. DD548_13240 SM01240 DD548_13240 DD548_13315 SM00855 Phosphoglycerate mutase family DD548_13405 SM00470 ParB-like nuclease domain DD548_13455 SM00382 ATPases associated with a variety of cellular activities DD548_13465 SM00530 Helix-turn-helix XRE-family like proteins DD548_13565 SM00530 Helix-turn-helix XRE-family like proteins DD548_13595 SM00382 ATPases associated with a variety of cellular activities DD548_13615 SM00226 Low molecular weight phosphatase family DD548_13625 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DD548_13650 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DD548_13690 SM01208 DD548_13690 DD548_13740 SM00345 helix_turn_helix gluconate operon transcriptional repressor DD548_13740 SM00895 DD548_13740 DD548_13745 SM00422 helix_turn_helix, mercury resistance DD548_13750 SM00954 Region found in RelA / SpoT proteins DD548_13785 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_13800 SM00382 ATPases associated with a variety of cellular activities DD548_13830 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_13860 SM00382 ATPases associated with a variety of cellular activities DD548_14015 SM00899 DD548_14015 DD548_14040 SM01266 DD548_14040 DD548_14245 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain DD548_14430 SM00382 ATPases associated with a variety of cellular activities DD548_14435 SM00387 Histidine kinase-like ATPases DD548_14440 SM00448 cheY-homologous receiver domain DD548_14440 SM00862 Transcriptional regulatory protein, C terminal DD548_14450 SM00098 Alkaline phosphatase homologues DD548_14460 SM00347 helix_turn_helix multiple antibiotic resistance protein DD548_14545 SM00047 Lysozyme subfamily 2 DD548_14570 SM00957 SecA DEAD-like domain DD548_14570 SM00958 SecA preprotein cross-linking domain DD548_14600 SM00903 Flavin reductase like domain DD548_14620 SM00903 Flavin reductase like domain DD548_14745 SM00382 ATPases associated with a variety of cellular activities DD548_14760 SM00867 YceI-like domain DD548_14770 SM00450 Rhodanese Homology Domain DD548_14825 SM00382 ATPases associated with a variety of cellular activities DD548_14865 SM00357 Cold shock protein domain DD548_14870 SM00530 Helix-turn-helix XRE-family like proteins DD548_14885 SM00470 ParB-like nuclease domain DD548_14895 SM01228 DD548_14895