locus-tag class description RK93_000060 PF08460 Bacterial SH3 domain RK93_000060 PF05257 CHAP domain RK93_000060 PF01520 N-acetylmuramoyl-L-alanine amidase RK93_000105 PF12822 ECF transporter, substrate-specific component RK93_000120 PF00271 Helicase conserved C-terminal domain RK93_000120 PF00270 DEAD/DEAH box helicase RK93_000125 PF01476 LysM domain RK93_000140 PF00710 Asparaginase, N-terminal RK93_000140 PF17763 Glutaminase/Asparaginase C-terminal domain RK93_000145 PF02224 Cytidylate kinase RK93_000165 PF00575 S1 RNA binding domain RK93_000170 PF01926 50S ribosome-binding GTPase RK93_000170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RK93_000175 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RK93_000175 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RK93_000180 PF00216 Bacterial DNA-binding protein RK93_000195 PF01209 ubiE/COQ5 methyltransferase family RK93_000200 PF00348 Polyprenyl synthetase RK93_000205 PF00334 Nucleoside diphosphate kinase RK93_000215 PF01264 Chorismate synthase RK93_000220 PF01761 3-dehydroquinate synthase RK93_000225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK93_000235 PF08864 UPF0302 domain RK93_000235 PF08858 IDEAL domain RK93_000240 PF07187 Protein of unknown function (DUF1405) RK93_000245 PF04298 Putative neutral zinc metallopeptidase RK93_000250 PF03819 MazG nucleotide pyrophosphohydrolase domain RK93_000255 PF00534 Glycosyl transferases group 1 RK93_000255 PF13439 Glycosyltransferase Family 4 RK93_000260 PF13735 tRNA nucleotidyltransferase domain 2 putative RK93_000260 PF12627 Probable RNA and SrmB- binding site of polymerase A RK93_000260 PF01743 Poly A polymerase head domain RK93_000265 PF02237 Biotin protein ligase C terminal domain RK93_000265 PF08279 HTH domain RK93_000265 PF03099 Biotin/lipoate A/B protein ligase family RK93_000270 PF00929 Exonuclease RK93_000270 PF13307 Helicase C-terminal domain RK93_000275 PF00152 tRNA synthetases class II (D, K and N) RK93_000275 PF01336 OB-fold nucleic acid binding domain RK93_000280 PF07261 Replication initiation and membrane attachment RK93_000285 PF00730 HhH-GPD superfamily base excision DNA repair protein RK93_000285 PF10576 Iron-sulfur binding domain of endonuclease III RK93_000285 PF00633 Helix-hairpin-helix motif RK93_000295 PF00912 Transglycosylase RK93_000295 PF00905 Penicillin binding protein transpeptidase domain RK93_000300 PF03838 Recombination protein U RK93_000320 PF06908 YspA SLOG family RK93_000325 PF05103 DivIVA protein RK93_000335 PF02926 THUMP domain RK93_000335 PF01170 Putative RNA methylase family UPF0020 RK93_000350 PF00350 Dynamin family RK93_000355 PF01367 5'-3' exonuclease, C-terminal SAM fold RK93_000355 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RK93_000360 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RK93_000360 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RK93_000365 PF00291 Pyridoxal-phosphate dependent enzyme RK93_000370 PF13520 Amino acid permease RK93_000375 PF07690 Major Facilitator Superfamily RK93_000380 PF04650 YSIRK type signal peptide RK93_000380 PF01468 GA module RK93_000380 PF07564 Domain of Unknown Function (DUF1542) RK93_000395 PF02592 Putative vitamin uptake transporter RK93_000400 PF10782 Zinc-finger RK93_000405 PF13769 Virulence factor RK93_000405 PF08712 Scaffold protein Nfu/NifU N terminal RK93_000410 PF13769 Virulence factor RK93_000410 PF08712 Scaffold protein Nfu/NifU N terminal RK93_000415 PF06491 Disulphide isomerase RK93_000420 PF00303 Thymidylate synthase RK93_000425 PF00186 Dihydrofolate reductase RK93_000430 PF02645 Uncharacterised protein, DegV family COG1307 RK93_000435 PF01625 Peptide methionine sulfoxide reductase RK93_000440 PF01641 SelR domain RK93_000445 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK93_000450 PF06855 YozE SAM-like fold RK93_000455 PF13180 PDZ domain RK93_000455 PF03572 Peptidase family S41 RK93_000455 PF01471 Putative peptidoglycan binding domain RK93_000465 PF04101 Glycosyltransferase family 28 C-terminal domain RK93_000465 PF03033 Glycosyltransferase family 28 N-terminal domain RK93_000470 PF01569 PAP2 superfamily RK93_000475 PF01797 Transposase IS200 like RK93_000490 PF00486 Transcriptional regulatory protein, C terminal RK93_000490 PF00072 Response regulator receiver domain RK93_000495 PF00512 His Kinase A (phospho-acceptor) domain RK93_000495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_000495 PF18719 ArlS sensor domain RK93_000500 PF00676 Dehydrogenase E1 component RK93_000500 PF16870 2-oxoglutarate dehydrogenase C-terminal RK93_000500 PF02779 Transketolase, pyrimidine binding domain RK93_000505 PF02817 e3 binding domain RK93_000505 PF00364 Biotin-requiring enzyme RK93_000505 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK93_000520 PF08406 CbbQ/NirQ/NorQ C-terminal RK93_000520 PF07728 AAA domain (dynein-related subfamily) RK93_000525 PF00092 von Willebrand factor type A domain RK93_000530 PF05525 Branched-chain amino acid transport protein RK93_000540 PF05816 Toxic anion resistance protein (TelA) RK93_000550 PF00708 Acylphosphatase RK93_000565 PF00313 'Cold-shock' DNA-binding domain RK93_000575 PF00872 Transposase, Mutator family RK93_000585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RK93_000585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK93_000590 PF00842 Alanine racemase, C-terminal domain RK93_000590 PF01168 Alanine racemase, N-terminal domain RK93_000595 PF07687 Peptidase dimerisation domain RK93_000595 PF01546 Peptidase family M20/M25/M40 RK93_000600 PF14602 Hexapeptide repeat of succinyl-transferase RK93_000600 PF00132 Bacterial transferase hexapeptide (six repeats) RK93_000600 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal RK93_000605 PF01113 Dihydrodipicolinate reductase, N-terminus RK93_000605 PF05173 Dihydrodipicolinate reductase, C-terminus RK93_000610 PF00701 Dihydrodipicolinate synthetase family RK93_000615 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK93_000615 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK93_000620 PF00696 Amino acid kinase family RK93_000620 PF01842 ACT domain RK93_000620 PF13840 ACT domain RK93_000625 PF00005 ABC transporter RK93_000625 PF12848 ABC transporter RK93_000630 PF13509 S1 domain RK93_000630 PF17783 CvfB-like winged helix domain RK93_000640 PF12849 PBP superfamily domain RK93_000645 PF00528 Binding-protein-dependent transport system inner membrane component RK93_000650 PF00528 Binding-protein-dependent transport system inner membrane component RK93_000655 PF00005 ABC transporter RK93_000660 PF01895 PhoU domain RK93_000665 PF01432 Peptidase family M3 RK93_000665 PF08439 Oligopeptidase F RK93_000680 PF00528 Binding-protein-dependent transport system inner membrane component RK93_000685 PF00528 Binding-protein-dependent transport system inner membrane component RK93_000690 PF00005 ABC transporter RK93_000695 PF00005 ABC transporter RK93_000710 PF02388 FemAB family RK93_000715 PF02388 FemAB family RK93_000720 PF00290 Tryptophan synthase alpha chain RK93_000725 PF00291 Pyridoxal-phosphate dependent enzyme RK93_000730 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RK93_000735 PF00218 Indole-3-glycerol phosphate synthase RK93_000740 PF00591 Glycosyl transferase family, a/b domain RK93_000745 PF00117 Glutamine amidotransferase class-I RK93_000750 PF04715 Anthranilate synthase component I, N terminal region RK93_000750 PF00425 chorismate binding enzyme RK93_000755 PF05343 M42 glutamyl aminopeptidase RK93_000760 PF02153 Prephenate dehydrogenase RK93_000765 PF11799 impB/mucB/samB family C-terminal domain RK93_000765 PF00817 impB/mucB/samB family RK93_000765 PF11798 IMS family HHH motif RK93_000770 PF01361 Tautomerase enzyme RK93_000775 PF03816 Cell envelope-related transcriptional attenuator domain RK93_000780 PF01625 Peptide methionine sulfoxide reductase RK93_000785 PF09924 Uncharacterised conserved protein (DUF2156) RK93_000785 PF03706 Lysylphosphatidylglycerol synthase TM region RK93_000790 PF01594 AI-2E family transporter RK93_000800 PF00874 PRD domain RK93_000800 PF03123 CAT RNA binding domain RK93_000805 PF01235 Sodium:alanine symporter family RK93_000815 PF03989 DNA gyrase C-terminal domain, beta-propeller RK93_000815 PF00521 DNA gyrase/topoisomerase IV, subunit A RK93_000820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_000820 PF00204 DNA gyrase B RK93_000820 PF01751 Toprim domain RK93_000820 PF00986 DNA gyrase B subunit, carboxyl terminus RK93_000825 PF02660 Glycerol-3-phosphate acyltransferase RK93_000845 PF03061 Thioesterase superfamily RK93_000850 PF00694 Aconitase C-terminal domain RK93_000850 PF00330 Aconitase family (aconitate hydratase) RK93_000860 PF02028 BCCT, betaine/carnitine/choline family transporter RK93_000865 PF01741 Large-conductance mechanosensitive channel, MscL RK93_000870 PF13476 AAA domain RK93_000875 PF00149 Calcineurin-like phosphoesterase RK93_000875 PF12320 Type 5 capsule protein repressor C-terminal domain RK93_000880 PF07301 Protein of unknown function (DUF1453) RK93_000890 PF03672 Uncharacterised protein family (UPF0154) RK93_000895 PF02779 Transketolase, pyrimidine binding domain RK93_000895 PF02780 Transketolase, C-terminal domain RK93_000895 PF00456 Transketolase, thiamine diphosphate binding domain RK93_000900 PF05979 Bacterial protein of unknown function (DUF896) RK93_000910 PF01726 LexA DNA binding domain RK93_000910 PF00717 Peptidase S24-like RK93_000915 PF00188 Cysteine-rich secretory protein family RK93_000925 PF00478 IMP dehydrogenase / GMP reductase domain RK93_000930 PF00253 Ribosomal protein S14p/S29e RK93_000935 PF00471 Ribosomal protein L33 RK93_000940 PF00199 Catalase RK93_000940 PF06628 Catalase-related immune-responsive RK93_000945 PF00324 Amino acid permease RK93_000965 PF00288 GHMP kinases N terminal domain RK93_000965 PF08544 GHMP kinases C terminal RK93_000970 PF00291 Pyridoxal-phosphate dependent enzyme RK93_000975 PF03447 Homoserine dehydrogenase, NAD binding domain RK93_000975 PF00742 Homoserine dehydrogenase RK93_000975 PF01842 ACT domain RK93_000980 PF00696 Amino acid kinase family RK93_000980 PF13840 ACT domain RK93_000995 PF00565 Staphylococcal nuclease homologue RK93_001005 PF00196 Bacterial regulatory proteins, luxR family RK93_001005 PF00072 Response regulator receiver domain RK93_001020 PF00005 ABC transporter RK93_001025 PF13091 PLD-like domain RK93_001025 PF13396 Phospholipase_D-nuclease N-terminal RK93_001135 PF12642 Conjugative transposon protein TcpC RK93_001140 PF02486 Replication initiation factor RK93_001140 PF18106 Rolling Circle replication initiation protein N-terminal domain RK93_001210 PF03951 Glutamine synthetase, beta-Grasp domain RK93_001210 PF00120 Glutamine synthetase, catalytic domain RK93_001215 PF13411 MerR HTH family regulatory protein RK93_001220 PF06838 Methionine gamma-lyase RK93_001230 PF00255 Glutathione peroxidase RK93_001235 PF17209 Hfq protein RK93_001250 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RK93_001250 PF01266 FAD dependent oxidoreductase RK93_001255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK93_001255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK93_001260 PF00230 Major intrinsic protein RK93_001265 PF04309 Glycerol-3-phosphate responsive antiterminator RK93_001270 PF08676 MutL C terminal dimerisation domain RK93_001270 PF01119 DNA mismatch repair protein, C-terminal domain RK93_001275 PF05188 MutS domain II RK93_001275 PF05192 MutS domain III RK93_001275 PF01624 MutS domain I RK93_001275 PF05190 MutS family domain IV RK93_001275 PF00488 MutS domain V RK93_001290 PF00919 Uncharacterized protein family UPF0004 RK93_001290 PF04055 Radical SAM superfamily RK93_001290 PF01938 TRAM domain RK93_001295 PF01910 Thiamine-binding protein RK93_001300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK93_001305 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RK93_001305 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RK93_001305 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RK93_001310 PF13277 YmdB-like protein RK93_001320 PF01966 HD domain RK93_001320 PF12072 Domain of unknown function (DUF3552) RK93_001320 PF00013 KH domain RK93_001325 PF00154 recA bacterial DNA recombination protein RK93_001330 PF00994 Probable molybdopterin binding domain RK93_001330 PF18146 Damage-inducible protein CinA KH domain RK93_001330 PF02464 Competence-damaged protein RK93_001335 PF01066 CDP-alcohol phosphatidyltransferase RK93_001345 PF11868 Protein of unknown function (DUF3388) RK93_001355 PF00675 Insulinase (Peptidase family M16) RK93_001355 PF05193 Peptidase M16 inactive domain RK93_001360 PF05193 Peptidase M16 inactive domain RK93_001365 PF07702 UTRA domain RK93_001365 PF00392 Bacterial regulatory proteins, gntR family RK93_001370 PF17854 FtsK alpha domain RK93_001370 PF09397 Ftsk gamma domain RK93_001370 PF01580 FtsK/SpoIIIE family RK93_001375 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RK93_001375 PF17770 Ribonuclease J C-terminal domain RK93_001375 PF00753 Metallo-beta-lactamase superfamily RK93_001385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RK93_001385 PF00575 S1 RNA binding domain RK93_001385 PF03725 3' exoribonuclease family, domain 2 RK93_001385 PF01138 3' exoribonuclease family, domain 1 RK93_001385 PF00013 KH domain RK93_001390 PF00312 Ribosomal protein S15 RK93_001395 PF01687 Riboflavin kinase RK93_001395 PF06574 FAD synthetase RK93_001400 PF01509 TruB family pseudouridylate synthase (N terminal domain) RK93_001400 PF16198 tRNA pseudouridylate synthase B C-terminal domain RK93_001405 PF02033 Ribosome-binding factor A RK93_001410 PF00009 Elongation factor Tu GTP binding domain RK93_001410 PF11987 Translation-initiation factor 2 RK93_001410 PF04760 Translation initiation factor IF-2, N-terminal region RK93_001415 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RK93_001420 PF04296 Protein of unknown function (DUF448) RK93_001425 PF13184 NusA-like KH domain RK93_001425 PF00575 S1 RNA binding domain RK93_001425 PF08529 NusA N-terminal domain RK93_001430 PF17384 RimP C-terminal SH3 domain RK93_001430 PF02576 RimP N-terminal domain RK93_001440 PF11490 DNA polymerase III polC-type N-terminus II RK93_001440 PF07733 Bacterial DNA polymerase III alpha NTPase domain RK93_001440 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RK93_001440 PF14579 Helix-hairpin-helix motif RK93_001440 PF02811 PHP domain RK93_001440 PF00929 Exonuclease RK93_001440 PF14480 DNA polymerase III polC-type N-terminus I RK93_001445 PF04073 Aminoacyl-tRNA editing domain RK93_001445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK93_001445 PF03129 Anticodon binding domain RK93_001450 PF13180 PDZ domain RK93_001450 PF02163 Peptidase family M50 RK93_001460 PF01255 Putative undecaprenyl diphosphate synthase RK93_001465 PF01765 Ribosome recycling factor RK93_001470 PF00696 Amino acid kinase family RK93_001475 PF00889 Elongation factor TS RK93_001485 PF00318 Ribosomal protein S2 RK93_001495 PF06018 CodY GAF-like domain RK93_001495 PF08222 CodY helix-turn-helix domain RK93_001500 PF07724 AAA domain (Cdc48 subfamily) RK93_001500 PF10431 C-terminal, D2-small domain, of ClpB protein RK93_001500 PF00004 ATPase family associated with various cellular activities (AAA) RK93_001505 PF00227 Proteasome subunit RK93_001510 PF02899 Phage integrase, N-terminal SAM-like domain RK93_001510 PF00589 Phage integrase family RK93_001515 PF01134 Glucose inhibited division protein A RK93_001520 PF01751 Toprim domain RK93_001520 PF01396 Topoisomerase DNA binding C4 zinc finger RK93_001520 PF01131 DNA topoisomerase RK93_001525 PF02481 DNA recombination-mediator protein A RK93_001530 PF02388 FemAB family RK93_001535 PF00872 Transposase, Mutator family RK93_001545 PF05257 CHAP domain RK93_001545 PF01476 LysM domain RK93_001550 PF00549 CoA-ligase RK93_001550 PF02629 CoA binding domain RK93_001555 PF00549 CoA-ligase RK93_001555 PF08442 ATP-grasp domain RK93_001560 PF01351 Ribonuclease HII RK93_001565 PF01926 50S ribosome-binding GTPase RK93_001575 PF01245 Ribosomal protein L19 RK93_001580 PF01746 tRNA (Guanine-1)-methyltransferase RK93_001585 PF05239 PRC-barrel domain RK93_001585 PF01782 RimM N-terminal domain RK93_001590 PF00886 Ribosomal protein S16 RK93_001595 PF02881 SRP54-type protein, helical bundle domain RK93_001595 PF00448 SRP54-type protein, GTPase domain RK93_001595 PF02978 Signal peptide binding domain RK93_001600 PF04297 Putative helix-turn-helix protein, YlxM / p13 like RK93_001605 PF02881 SRP54-type protein, helical bundle domain RK93_001605 PF00448 SRP54-type protein, GTPase domain RK93_001610 PF02463 RecF/RecN/SMC N terminal domain RK93_001610 PF06470 SMC proteins Flexible Hinge Domain RK93_001615 PF14622 Ribonuclease-III-like RK93_001615 PF00035 Double-stranded RNA binding motif RK93_001620 PF00550 Phosphopantetheine attachment site RK93_001635 PF00698 Acyl transferase domain RK93_001640 PF02504 Fatty acid synthesis protein RK93_001645 PF03061 Thioesterase superfamily RK93_001650 PF17191 RecG wedge domain RK93_001650 PF00270 DEAD/DEAH box helicase RK93_001650 PF00271 Helicase conserved C-terminal domain RK93_001655 PF02734 DAK2 domain RK93_001655 PF13684 Dihydroxyacetone kinase family RK93_001660 PF03780 Asp23 family, cell envelope-related function RK93_001665 PF00830 Ribosomal L28 family RK93_001675 PF00834 Ribulose-phosphate 3 epimerase family RK93_001680 PF03193 RsgA GTPase RK93_001680 PF16745 RsgA N-terminal domain RK93_001685 PF03793 PASTA domain RK93_001685 PF00069 Protein kinase domain RK93_001695 PF04055 Radical SAM superfamily RK93_001700 PF01029 NusB family RK93_001700 PF01189 16S rRNA methyltransferase RsmB/F RK93_001705 PF00551 Formyl transferase RK93_001705 PF02911 Formyl transferase, C-terminal domain RK93_001710 PF01327 Polypeptide deformylase RK93_001715 PF05154 TM2 domain RK93_001725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RK93_001725 PF04851 Type III restriction enzyme, res subunit RK93_001725 PF17764 3′ DNA-binding domain (3′BD) RK93_001725 PF00271 Helicase conserved C-terminal domain RK93_001725 PF18074 Primosomal protein N C-terminal domain RK93_001730 PF02441 Flavoprotein RK93_001730 PF04127 DNA / pantothenate metabolism flavoprotein RK93_001735 PF01192 RNA polymerase Rpb6 RK93_001740 PF00625 Guanylate kinase RK93_001760 PF00156 Phosphoribosyl transferase domain RK93_001765 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK93_001770 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RK93_001770 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK93_001770 PF02142 MGS-like domain RK93_001775 PF00117 Glutamine amidotransferase class-I RK93_001775 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RK93_001780 PF01979 Amidohydrolase family RK93_001785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK93_001785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK93_001790 PF00860 Permease family RK93_001795 PF00156 Phosphoribosyl transferase domain RK93_001800 PF01479 S4 domain RK93_001800 PF00849 RNA pseudouridylate synthase RK93_001805 PF01252 Signal peptidase (SPase) II RK93_001820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK93_001825 PF08264 Anticodon-binding domain of tRNA RK93_001825 PF06827 Zinc finger found in FPG and IleRS RK93_001825 PF00133 tRNA synthetases class I (I, L, M and V) RK93_001830 PF05103 DivIVA protein RK93_001835 PF01479 S4 domain RK93_001835 PF17774 Putative RNA-binding domain in YlmH RK93_001840 PF02325 YGGT family RK93_001845 PF04472 Cell division protein SepF RK93_001850 PF01168 Alanine racemase, N-terminal domain RK93_001860 PF00091 Tubulin/FtsZ family, GTPase domain RK93_001860 PF12327 FtsZ family, C-terminal domain RK93_001865 PF02491 SHS2 domain inserted in FTSA RK93_001870 PF08478 POTRA domain, FtsQ-type RK93_001870 PF03799 Cell division protein FtsQ RK93_001875 PF08245 Mur ligase middle domain RK93_001875 PF02875 Mur ligase family, glutamate ligase domain RK93_001880 PF00953 Glycosyl transferase family 4 RK93_001890 PF04977 Septum formation initiator RK93_001895 PF01795 MraW methylase family RK93_001900 PF02381 MraZ protein, putative antitoxin-like RK93_001905 PF10079 Bacillithiol biosynthesis BshC RK93_001915 PF13419 Haloacid dehalogenase-like hydrolase RK93_001920 PF05480 Staphylococcus haemolytic protein RK93_001925 PF05480 Staphylococcus haemolytic protein RK93_001950 PF03606 C4-dicarboxylate anaerobic carrier RK93_001955 PF00696 Amino acid kinase family RK93_001960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK93_001960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK93_001965 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_001965 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_001970 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_001970 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_001995 PF07968 Leukocidin/Hemolysin toxin family RK93_002025 PF12199 Extracellular fibrinogen binding protein C terminal RK93_002035 PF16104 Formyl peptide receptor-like 1 inhibitory protein RK93_002055 PF12850 Calcineurin-like phosphoesterase superfamily domain RK93_002060 PF01725 Ham1 family RK93_002065 PF01177 Asp/Glu/Hydantoin racemase RK93_002070 PF13085 2Fe-2S iron-sulfur cluster binding domain RK93_002070 PF13183 4Fe-4S dicluster domain RK93_002075 PF00890 FAD binding domain RK93_002075 PF02910 Fumarate reductase flavoprotein C-term RK93_002080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RK93_002085 PF08459 UvrC Helix-hairpin-helix N-terminal RK93_002085 PF01541 GIY-YIG catalytic domain RK93_002085 PF02151 UvrB/uvrC motif RK93_002095 PF00085 Thioredoxin RK93_002100 PF01713 Smr domain RK93_002100 PF00488 MutS domain V RK93_002105 PF02811 PHP domain RK93_002105 PF14791 DNA polymerase beta thumb RK93_002105 PF14716 Helix-hairpin-helix domain RK93_002115 PF05164 Cell division protein ZapA RK93_002120 PF01351 Ribonuclease HII RK93_002120 PF11858 Domain of unknown function (DUF3378) RK93_002130 PF03483 B3/4 domain RK93_002130 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RK93_002130 PF01588 Putative tRNA binding domain RK93_002130 PF03147 Ferredoxin-fold anticodon binding domain RK93_002130 PF03484 tRNA synthetase B5 domain RK93_002135 PF01409 tRNA synthetases class II core domain (F) RK93_002135 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RK93_002140 PF00588 SpoU rRNA Methylase family RK93_002140 PF08032 RNA 2'-O ribose methyltransferase substrate binding RK93_002150 PF03992 Antibiotic biosynthesis monooxygenase RK93_002155 PF04203 Sortase domain RK93_002160 PF01032 FecCD transport family RK93_002165 PF01497 Periplasmic binding protein RK93_002175 PF05031 Iron Transport-associated domain RK93_002180 PF05031 Iron Transport-associated domain RK93_002180 PF00746 LPXTG cell wall anchor motif RK93_002185 PF00746 LPXTG cell wall anchor motif RK93_002185 PF05031 Iron Transport-associated domain RK93_002185 PF04650 YSIRK type signal peptide RK93_002190 PF01510 N-acetylmuramoyl-L-alanine amidase RK93_002190 PF05257 CHAP domain RK93_002190 PF08460 Bacterial SH3 domain RK93_002210 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK93_002210 PF13457 GW (Gly-Tryp) dipeptide domain RK93_002320 PF04466 Phage terminase large subunit RK93_002320 PF17288 Terminase RNAseH like domain RK93_002360 PF00692 dUTPase RK93_002415 PF00436 Single-strand binding protein family RK93_002485 PF02796 Helix-turn-helix domain of resolvase RK93_002485 PF00239 Resolvase, N terminal domain RK93_002490 PF01783 Ribosomal L32p protein family RK93_002505 PF05636 HIGH Nucleotidyl Transferase RK93_002510 PF01467 Cytidylyltransferase-like RK93_002525 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) RK93_002530 PF03009 Glycerophosphoryl diester phosphodiesterase family RK93_002535 PF06133 Control of competence regulator ComK, YlbF/YmcA RK93_002555 PF01040 UbiA prenyltransferase family RK93_002560 PF02628 Cytochrome oxidase assembly protein RK93_002565 PF00682 HMGL-like RK93_002565 PF02436 Conserved carboxylase domain RK93_002565 PF00364 Biotin-requiring enzyme RK93_002565 PF00289 Biotin carboxylase, N-terminal domain RK93_002565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK93_002565 PF02785 Biotin carboxylase C-terminal domain RK93_002570 PF01098 Cell cycle protein RK93_002575 PF07408 Protein of unknown function (DUF1507) RK93_002600 PF00459 Inositol monophosphatase family RK93_002605 PF06335 Protein of unknown function (DUF1054) RK93_002610 PF01566 Natural resistance-associated macrophage protein RK93_002625 PF13416 Bacterial extracellular solute-binding protein RK93_002630 PF00528 Binding-protein-dependent transport system inner membrane component RK93_002635 PF00528 Binding-protein-dependent transport system inner membrane component RK93_002640 PF08402 TOBE domain RK93_002640 PF00005 ABC transporter RK93_002650 PF05256 Uncharacterised protein family (UPF0223) RK93_002655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK93_002655 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_002660 PF00364 Biotin-requiring enzyme RK93_002660 PF02817 e3 binding domain RK93_002660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK93_002665 PF02779 Transketolase, pyrimidine binding domain RK93_002665 PF02780 Transketolase, C-terminal domain RK93_002670 PF00676 Dehydrogenase E1 component RK93_002680 PF01327 Polypeptide deformylase RK93_002695 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RK93_002695 PF00753 Metallo-beta-lactamase superfamily RK93_002695 PF17770 Ribonuclease J C-terminal domain RK93_002700 PF02254 TrkA-N domain RK93_002700 PF02080 TrkA-C domain RK93_002705 PF02322 Cytochrome bd terminal oxidase subunit II RK93_002710 PF01654 Cytochrome bd terminal oxidase subunit I RK93_002720 PF05524 PEP-utilising enzyme, N-terminal RK93_002720 PF02896 PEP-utilising enzyme, TIM barrel domain RK93_002720 PF00391 PEP-utilising enzyme, mobile domain RK93_002725 PF00381 PTS HPr component phosphorylation site RK93_002735 PF17785 PUA-like domain RK93_002735 PF10672 S-adenosylmethionine-dependent methyltransferase RK93_002760 PF09819 ABC-type cobalt transport system, permease component RK93_002765 PF00005 ABC transporter RK93_002770 PF02361 Cobalt transport protein RK93_002775 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RK93_002775 PF02843 Phosphoribosylglycinamide synthetase, C domain RK93_002775 PF02844 Phosphoribosylglycinamide synthetase, N domain RK93_002780 PF02142 MGS-like domain RK93_002780 PF01808 AICARFT/IMPCHase bienzyme RK93_002785 PF00551 Formyl transferase RK93_002790 PF00586 AIR synthase related protein, N-terminal domain RK93_002790 PF02769 AIR synthase related protein, C-terminal domain RK93_002795 PF00156 Phosphoribosyl transferase domain RK93_002795 PF13537 Glutamine amidotransferase domain RK93_002800 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RK93_002800 PF02769 AIR synthase related protein, C-terminal domain RK93_002800 PF00586 AIR synthase related protein, N-terminal domain RK93_002810 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RK93_002815 PF01259 SAICAR synthetase RK93_002820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_002820 PF02222 ATP-grasp domain RK93_002820 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RK93_002825 PF00731 AIR carboxylase RK93_002830 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RK93_002830 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RK93_002850 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RK93_002850 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RK93_002855 PF00115 Cytochrome C and Quinol oxidase polypeptide I RK93_002860 PF00510 Cytochrome c oxidase subunit III RK93_002865 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RK93_002870 PF00144 Beta-lactamase RK93_002875 PF03816 Cell envelope-related transcriptional attenuator domain RK93_002880 PF10804 Protein of unknown function (DUF2538) RK93_002885 PF13673 Acetyltransferase (GNAT) domain RK93_002890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK93_002890 PF01510 N-acetylmuramoyl-L-alanine amidase RK93_002890 PF13457 GW (Gly-Tryp) dipeptide domain RK93_002905 PF01757 Acyltransferase family RK93_002910 PF00155 Aminotransferase class I and II RK93_002920 PF14731 Staphopain proregion RK93_002920 PF05543 Staphopain peptidase C47 RK93_002925 PF09023 Staphostatin B RK93_002930 PF00378 Enoyl-CoA hydratase/isomerase RK93_002935 PF00561 alpha/beta hydrolase fold RK93_002940 PF16582 Middle domain of thiamine pyrophosphate RK93_002940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK93_002940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK93_002945 PF00425 chorismate binding enzyme RK93_002955 PF01040 UbiA prenyltransferase family RK93_002960 PF00583 Acetyltransferase (GNAT) family RK93_002965 PF05154 TM2 domain RK93_002975 PF01497 Periplasmic binding protein RK93_002985 PF00534 Glycosyl transferases group 1 RK93_003005 PF00872 Transposase, Mutator family RK93_003010 PF08402 TOBE domain RK93_003010 PF00005 ABC transporter RK93_003045 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) RK93_003050 PF03099 Biotin/lipoate A/B protein ligase family RK93_003050 PF10437 Bacterial lipoate protein ligase C-terminus RK93_003060 PF06338 ComK protein RK93_003075 PF02872 5'-nucleotidase, C-terminal domain RK93_003075 PF00149 Calcineurin-like phosphoesterase RK93_003080 PF02386 Cation transport protein RK93_003085 PF13180 PDZ domain RK93_003090 PF03741 Integral membrane protein TerC family RK93_003095 PF16658 Class II release factor RF3, C-terminal domain RK93_003095 PF00009 Elongation factor Tu GTP binding domain RK93_003095 PF03144 Elongation factor Tu domain 2 RK93_003105 PF02875 Mur ligase family, glutamate ligase domain RK93_003105 PF01225 Mur ligase family, catalytic domain RK93_003105 PF08245 Mur ligase middle domain RK93_003110 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase RK93_003110 PF04101 Glycosyltransferase family 28 C-terminal domain RK93_003115 PF07690 Major Facilitator Superfamily RK93_003130 PF01235 Sodium:alanine symporter family RK93_003135 PF01594 AI-2E family transporter RK93_003145 PF02254 TrkA-N domain RK93_003145 PF02080 TrkA-C domain RK93_003145 PF00999 Sodium/hydrogen exchanger family RK93_003150 PF01769 Divalent cation transporter RK93_003150 PF00571 CBS domain RK93_003150 PF03448 MgtE intracellular N domain RK93_003155 PF00849 RNA pseudouridylate synthase RK93_003160 PF01513 ATP-NAD kinase RK93_003165 PF04607 Region found in RelA / SpoT proteins RK93_003180 PF01152 Bacterial-like globin RK93_003190 PF01432 Peptidase family M3 RK93_003190 PF08439 Oligopeptidase F RK93_003205 PF05389 Negative regulator of genetic competence (MecA) RK93_003210 PF03960 ArsC family RK93_003215 PF00579 tRNA synthetases class I (W and Y) RK93_003220 PF00528 Binding-protein-dependent transport system inner membrane component RK93_003220 PF12911 N-terminal TM domain of oligopeptide transport permease C RK93_003225 PF00528 Binding-protein-dependent transport system inner membrane component RK93_003230 PF00005 ABC transporter RK93_003230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK93_003235 PF00005 ABC transporter RK93_003235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK93_003240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK93_003245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK93_003250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK93_003250 PF00005 ABC transporter RK93_003255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK93_003255 PF00005 ABC transporter RK93_003260 PF12911 N-terminal TM domain of oligopeptide transport permease C RK93_003260 PF00528 Binding-protein-dependent transport system inner membrane component RK93_003265 PF00528 Binding-protein-dependent transport system inner membrane component RK93_003275 PF02801 Beta-ketoacyl synthase, C-terminal domain RK93_003275 PF00109 Beta-ketoacyl synthase, N-terminal domain RK93_003280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RK93_003280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RK93_003290 PF03642 MAP domain RK93_003295 PF01161 Phosphatidylethanolamine-binding protein RK93_003320 PF00004 ATPase family associated with various cellular activities (AAA) RK93_003320 PF02861 Clp amino terminal domain, pathogenicity island component RK93_003320 PF07724 AAA domain (Cdc48 subfamily) RK93_003320 PF10431 C-terminal, D2-small domain, of ClpB protein RK93_003320 PF17871 AAA lid domain RK93_003325 PF01757 Acyltransferase family RK93_003330 PF01883 Iron-sulfur cluster assembly protein RK93_003340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK93_003340 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_003345 PF07457 Protein of unknown function (DUF1516) RK93_003350 PF01557 Fumarylacetoacetate (FAA) hydrolase family RK93_003355 PF13361 UvrD-like helicase C-terminal domain RK93_003355 PF00580 UvrD/REP helicase N-terminal domain RK93_003355 PF12705 PD-(D/E)XK nuclease superfamily RK93_003360 PF12705 PD-(D/E)XK nuclease superfamily RK93_003360 PF13361 UvrD-like helicase C-terminal domain RK93_003365 PF10502 Signal peptidase, peptidase S26 RK93_003370 PF10502 Signal peptidase, peptidase S26 RK93_003375 PF09335 SNARE associated Golgi protein RK93_003380 PF00342 Phosphoglucose isomerase RK93_003385 PF00764 Arginosuccinate synthase RK93_003390 PF00206 Lyase RK93_003390 PF14698 Argininosuccinate lyase C-terminal RK93_003395 PF03009 Glycerophosphoryl diester phosphodiesterase family RK93_003405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RK93_003405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RK93_003410 PF00202 Aminotransferase class-III RK93_003415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RK93_003420 PF00575 S1 RNA binding domain RK93_003425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RK93_003435 PF13244 Domain of unknown function (DUF4040) RK93_003435 PF00361 Proton-conducting membrane transporter RK93_003435 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK93_003440 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RK93_003445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RK93_003450 PF00361 Proton-conducting membrane transporter RK93_003455 PF01899 Na+/H+ ion antiporter subunit RK93_003460 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RK93_003465 PF03334 Na+/H+ antiporter subunit RK93_003475 PF03061 Thioesterase superfamily RK93_003480 PF03553 Na+/H+ antiporter family RK93_003480 PF13726 Na+-H+ antiporter family RK93_003485 PF00883 Cytosol aminopeptidase family, catalytic domain RK93_003485 PF02789 Cytosol aminopeptidase family, N-terminal domain RK93_003490 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_003495 PF01521 Iron-sulphur cluster biosynthesis RK93_003500 PF07293 Protein of unknown function (DUF1450) RK93_003505 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_003510 PF07315 Protein of unknown function (DUF1462) RK93_003515 PF01106 NifU-like domain RK93_003520 PF04914 DltD protein RK93_003525 PF00550 Phosphopantetheine attachment site RK93_003530 PF03062 MBOAT, membrane-bound O-acyltransferase family RK93_003535 PF00501 AMP-binding enzyme RK93_003535 PF13193 AMP-binding enzyme C-terminal domain RK93_003550 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_003550 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_003555 PF13344 Haloacid dehalogenase-like hydrolase RK93_003560 PF01934 Protein of unknown function DUF86 RK93_003570 PF06265 Protein of unknown function (DUF1027) RK93_003575 PF04055 Radical SAM superfamily RK93_003575 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RK93_003585 PF01925 Sulfite exporter TauE/SafE RK93_003590 PF01904 Protein of unknown function DUF72 RK93_003600 PF03060 Nitronate monooxygenase RK93_003605 PF01595 Cyclin M transmembrane N-terminal domain RK93_003605 PF00571 CBS domain RK93_003605 PF03471 Transporter associated domain RK93_003625 PF01458 Uncharacterized protein family (UPF0051) RK93_003630 PF01592 NifU-like N terminal domain RK93_003635 PF00266 Aminotransferase class-V RK93_003640 PF01458 Uncharacterized protein family (UPF0051) RK93_003645 PF00005 ABC transporter RK93_003655 PF05532 CsbD-like RK93_003680 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_003685 PF10668 Phage terminase small subunit RK93_003685 PF03592 Terminase small subunit RK93_003780 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_003785 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_003790 PF14659 Phage integrase, N-terminal SAM-like domain RK93_003790 PF00589 Phage integrase family RK93_003795 PF03180 NLPA lipoprotein RK93_003800 PF00528 Binding-protein-dependent transport system inner membrane component RK93_003805 PF09383 NIL domain RK93_003805 PF00005 ABC transporter RK93_003815 PF01751 Toprim domain RK93_003825 PF09234 Domain of unknown function (DUF1963) RK93_003835 PF01597 Glycine cleavage H-protein RK93_003840 PF03960 ArsC family RK93_003845 PF00085 Thioredoxin RK93_003855 PF01487 Type I 3-dehydroquinase RK93_003860 PF02566 OsmC-like protein RK93_003870 PF01810 LysE type translocator RK93_003875 PF00300 Histidine phosphatase superfamily (branch 1) RK93_003915 PF00313 'Cold-shock' DNA-binding domain RK93_003920 PF00565 Staphylococcal nuclease homologue RK93_003940 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_003940 PF17961 Bacterial Ig domain RK93_003940 PF04650 YSIRK type signal peptide RK93_003940 PF00746 LPXTG cell wall anchor motif RK93_003980 PF01797 Transposase IS200 like RK93_003990 PF01668 SmpB protein RK93_003995 PF00773 RNB domain RK93_003995 PF00575 S1 RNA binding domain RK93_003995 PF17876 Cold shock domain RK93_003995 PF08206 Ribonuclease B OB domain RK93_004000 PF12146 Serine aminopeptidase, S33 RK93_004005 PF03840 Preprotein translocase SecG subunit RK93_004015 PF03952 Enolase, N-terminal domain RK93_004015 PF00113 Enolase, C-terminal TIM barrel domain RK93_004020 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RK93_004020 PF01676 Metalloenzyme superfamily RK93_004025 PF00121 Triosephosphate isomerase RK93_004030 PF00162 Phosphoglycerate kinase RK93_004035 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK93_004035 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RK93_004040 PF04198 Putative sugar-binding domain RK93_004055 PF08338 Domain of unknown function (DUF1731) RK93_004055 PF01370 NAD dependent epimerase/dehydratase family RK93_004060 PF00574 Clp protease RK93_004070 PF10298 WhiA N-terminal LAGLIDADG-like domain RK93_004070 PF14527 WhiA LAGLIDADG-like domain RK93_004070 PF02650 WhiA C-terminal HTH domain RK93_004075 PF01933 Uncharacterised protein family UPF0052 RK93_004080 PF03668 P-loop ATPase protein family RK93_004090 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_004100 PF14602 Hexapeptide repeat of succinyl-transferase RK93_004105 PF01790 Prolipoprotein diacylglyceryl transferase RK93_004110 PF02603 HPr Serine kinase N terminus RK93_004110 PF07475 HPr Serine kinase C-terminal domain RK93_004115 PF00005 ABC transporter RK93_004115 PF17755 UvrA DNA-binding domain RK93_004115 PF17760 UvrA interaction domain RK93_004120 PF00271 Helicase conserved C-terminal domain RK93_004120 PF04851 Type III restriction enzyme, res subunit RK93_004120 PF12344 Ultra-violet resistance protein B RK93_004120 PF02151 UvrB/uvrC motif RK93_004120 PF17757 UvrB interaction domain RK93_004135 PF05257 CHAP domain RK93_004135 PF01476 LysM domain RK93_004155 PF01043 SecA preprotein cross-linking domain RK93_004155 PF02810 SEC-C motif RK93_004155 PF07517 SecA DEAD-like domain RK93_004155 PF07516 SecA Wing and Scaffold domain RK93_004160 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RK93_004160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RK93_004170 PF00271 Helicase conserved C-terminal domain RK93_004170 PF04851 Type III restriction enzyme, res subunit RK93_004175 PF02645 Uncharacterised protein, DegV family COG1307 RK93_004180 PF09186 Domain of unknown function (DUF1949) RK93_004180 PF01205 Uncharacterized protein family UPF0029 RK93_004185 PF00953 Glycosyl transferase family 4 RK93_004190 PF00990 Diguanylate cyclase, GGDEF domain RK93_004190 PF07694 5TMR of 5TMR-LYT RK93_004205 PF07687 Peptidase dimerisation domain RK93_004205 PF01546 Peptidase family M20/M25/M40 RK93_004210 PF02595 Glycerate kinase family RK93_004230 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RK93_004230 PF01565 FAD binding domain RK93_004240 PF01497 Periplasmic binding protein RK93_004245 PF00005 ABC transporter RK93_004250 PF01032 FecCD transport family RK93_004255 PF01032 FecCD transport family RK93_004270 PF00268 Ribonucleotide reductase, small chain RK93_004275 PF08343 Ribonucleotide reductase N-terminal RK93_004275 PF02867 Ribonucleotide reductase, barrel domain RK93_004275 PF00317 Ribonucleotide reductase, all-alpha domain RK93_004280 PF07972 NrdI Flavodoxin like RK93_004295 PF14489 QueF-like protein RK93_004305 PF00854 POT family RK93_004315 PF00781 Diacylglycerol kinase catalytic domain RK93_004325 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) RK93_004330 PF00155 Aminotransferase class I and II RK93_004335 PF00528 Binding-protein-dependent transport system inner membrane component RK93_004340 PF00571 CBS domain RK93_004340 PF00005 ABC transporter RK93_004350 PF16326 ABC transporter C-terminal domain RK93_004350 PF00005 ABC transporter RK93_004350 PF12848 ABC transporter RK93_004355 PF00884 Sulfatase RK93_004380 PF04715 Anthranilate synthase component I, N terminal region RK93_004380 PF00425 chorismate binding enzyme RK93_004385 PF00117 Glutamine amidotransferase class-I RK93_004385 PF00591 Glycosyl transferase family, a/b domain RK93_004385 PF02885 Glycosyl transferase family, helical bundle domain RK93_004390 PF06508 Queuosine biosynthesis protein QueC RK93_004395 PF01242 6-pyruvoyl tetrahydropterin synthase RK93_004400 PF04055 Radical SAM superfamily RK93_004420 PF00486 Transcriptional regulatory protein, C terminal RK93_004420 PF00072 Response regulator receiver domain RK93_004425 PF00512 His Kinase A (phospho-acceptor) domain RK93_004425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_004430 PF00535 Glycosyl transferase family 2 RK93_004435 PF00248 Aldo/keto reductase family RK93_004440 PF01595 Cyclin M transmembrane N-terminal domain RK93_004440 PF03471 Transporter associated domain RK93_004440 PF00571 CBS domain RK93_004445 PF01979 Amidohydrolase family RK93_004450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK93_004450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK93_004455 PF00294 pfkB family carbohydrate kinase RK93_004460 PF08220 DeoR-like helix-turn-helix domain RK93_004460 PF00455 DeoR C terminal sensor domain RK93_004465 PF04073 Aminoacyl-tRNA editing domain RK93_004475 PF07690 Major Facilitator Superfamily RK93_004500 PF00939 Sodium:sulfate symporter transmembrane region RK93_004510 PF00248 Aldo/keto reductase family RK93_004515 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK93_004515 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK93_004520 PF01047 MarR family RK93_004525 PF00005 ABC transporter RK93_004525 PF00664 ABC transporter transmembrane region RK93_004530 PF00664 ABC transporter transmembrane region RK93_004530 PF00005 ABC transporter RK93_004535 PF02673 Bacitracin resistance protein BacA RK93_004545 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RK93_004550 PF03641 Possible lysine decarboxylase RK93_004555 PF13302 Acetyltransferase (GNAT) domain RK93_004580 PF04306 Protein of unknown function (DUF456) RK93_004585 PF07690 Major Facilitator Superfamily RK93_004595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK93_004595 PF03466 LysR substrate binding domain RK93_004615 PF01709 Transcriptional regulator RK93_004625 PF02311 AraC-like ligand binding domain RK93_004625 PF12833 Helix-turn-helix domain RK93_004635 PF05257 CHAP domain RK93_004635 PF01476 LysM domain RK93_004640 PF01384 Phosphate transporter family RK93_004645 PF01865 Protein of unknown function DUF47 RK93_004650 PF02687 FtsX-like permease family RK93_004655 PF00005 ABC transporter RK93_004660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_004665 PF00486 Transcriptional regulatory protein, C terminal RK93_004665 PF00072 Response regulator receiver domain RK93_004705 PF03610 PTS system fructose IIA component RK93_004710 PF02734 DAK2 domain RK93_004715 PF02733 Dak1 domain RK93_004720 PF01032 FecCD transport family RK93_004725 PF01032 FecCD transport family RK93_004730 PF00005 ABC transporter RK93_004735 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RK93_004735 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 RK93_004745 PF01773 Na+ dependent nucleoside transporter N-terminus RK93_004745 PF07662 Na+ dependent nucleoside transporter C-terminus RK93_004750 PF00005 ABC transporter RK93_004750 PF00664 ABC transporter transmembrane region RK93_004755 PF00768 D-alanyl-D-alanine carboxypeptidase RK93_004755 PF07943 Penicillin-binding protein 5, C-terminal domain RK93_004760 PF01467 Cytidylyltransferase-like RK93_004765 PF00535 Glycosyl transferase family 2 RK93_004770 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK93_004775 PF01061 ABC-2 type transporter RK93_004780 PF00005 ABC transporter RK93_004785 PF03808 Glycosyl transferase WecB/TagA/CpsF family RK93_004795 PF01325 Iron dependent repressor, N-terminal DNA binding domain RK93_004795 PF18357 Diphteria toxin repressor SH3 domain RK93_004795 PF02742 Iron dependent repressor, metal binding and dimerisation domain RK93_004800 PF00005 ABC transporter RK93_004805 PF00950 ABC 3 transport family RK93_004810 PF01297 Zinc-uptake complex component A periplasmic RK93_004815 PF00999 Sodium/hydrogen exchanger family RK93_004820 PF03334 Na+/H+ antiporter subunit RK93_004825 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RK93_004830 PF01899 Na+/H+ ion antiporter subunit RK93_004835 PF00361 Proton-conducting membrane transporter RK93_004840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RK93_004845 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RK93_004850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK93_004850 PF00361 Proton-conducting membrane transporter RK93_004850 PF13244 Domain of unknown function (DUF4040) RK93_004855 PF00589 Phage integrase family RK93_004880 PF12697 Alpha/beta hydrolase family RK93_004895 PF00561 alpha/beta hydrolase fold RK93_004900 PF13419 Haloacid dehalogenase-like hydrolase RK93_004905 PF01032 FecCD transport family RK93_004910 PF01497 Periplasmic binding protein RK93_004925 PF05746 DALR anticodon binding domain RK93_004925 PF00750 tRNA synthetases class I (R) RK93_004925 PF03485 Arginyl tRNA synthetase N terminal domain RK93_004940 PF08240 Alcohol dehydrogenase GroES-like domain RK93_004940 PF00107 Zinc-binding dehydrogenase RK93_004945 PF08741 YwhD family RK93_004950 PF01966 HD domain RK93_004960 PF03358 NADPH-dependent FMN reductase RK93_004965 PF00248 Aldo/keto reductase family RK93_004990 PF00872 Transposase, Mutator family RK93_005065 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_005065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK93_005070 PF07293 Protein of unknown function (DUF1450) RK93_005075 PF08544 GHMP kinases C terminal RK93_005075 PF00288 GHMP kinases N terminal domain RK93_005085 PF08544 GHMP kinases C terminal RK93_005085 PF00288 GHMP kinases N terminal domain RK93_005090 PF03099 Biotin/lipoate A/B protein ligase family RK93_005095 PF01515 Phosphate acetyl/butaryl transferase RK93_005125 PF04241 Protein of unknown function (DUF423) RK93_005135 PF03167 Uracil DNA glycosylase superfamily RK93_005140 PF08543 Phosphomethylpyrimidine kinase RK93_005145 PF17412 Family of unknown function RK93_005160 PF00108 Thiolase, N-terminal domain RK93_005160 PF02803 Thiolase, C-terminal domain RK93_005165 PF13193 AMP-binding enzyme C-terminal domain RK93_005165 PF00501 AMP-binding enzyme RK93_005175 PF07690 Major Facilitator Superfamily RK93_005185 PF01380 SIS domain RK93_005190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RK93_005195 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RK93_005205 PF02585 GlcNAc-PI de-N-acetylase RK93_005210 PF02649 Type I GTP cyclohydrolase folE2 RK93_005220 PF00534 Glycosyl transferases group 1 RK93_005225 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_005225 PF17210 SdrD B-like domain RK93_005225 PF17961 Bacterial Ig domain RK93_005225 PF00746 LPXTG cell wall anchor motif RK93_005225 PF04650 YSIRK type signal peptide RK93_005230 PF04650 YSIRK type signal peptide RK93_005230 PF17210 SdrD B-like domain RK93_005230 PF00746 LPXTG cell wall anchor motif RK93_005230 PF17961 Bacterial Ig domain RK93_005230 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_005235 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_005235 PF00746 LPXTG cell wall anchor motif RK93_005235 PF17961 Bacterial Ig domain RK93_005235 PF04650 YSIRK type signal peptide RK93_005235 PF17210 SdrD B-like domain RK93_005245 PF03358 NADPH-dependent FMN reductase RK93_005255 PF14437 MafB19-like deaminase RK93_005260 PF01712 Deoxynucleoside kinase RK93_005265 PF01712 Deoxynucleoside kinase RK93_005280 PF01063 Amino-transferase class IV RK93_005285 PF01370 NAD dependent epimerase/dehydratase family RK93_005290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK93_005290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK93_005295 PF01965 DJ-1/PfpI family RK93_005300 PF00155 Aminotransferase class I and II RK93_005305 PF01546 Peptidase family M20/M25/M40 RK93_005305 PF07687 Peptidase dimerisation domain RK93_005310 PF03144 Elongation factor Tu domain 2 RK93_005310 PF03143 Elongation factor Tu C-terminal domain RK93_005310 PF00009 Elongation factor Tu GTP binding domain RK93_005315 PF14492 Elongation Factor G, domain II RK93_005315 PF03144 Elongation factor Tu domain 2 RK93_005315 PF00679 Elongation factor G C-terminus RK93_005315 PF00009 Elongation factor Tu GTP binding domain RK93_005315 PF03764 Elongation factor G, domain IV RK93_005320 PF00177 Ribosomal protein S7p/S5e RK93_005325 PF00164 Ribosomal protein S12/S23 RK93_005330 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RK93_005335 PF00623 RNA polymerase Rpb1, domain 2 RK93_005335 PF05000 RNA polymerase Rpb1, domain 4 RK93_005335 PF04997 RNA polymerase Rpb1, domain 1 RK93_005335 PF04998 RNA polymerase Rpb1, domain 5 RK93_005335 PF04983 RNA polymerase Rpb1, domain 3 RK93_005340 PF10385 RNA polymerase beta subunit external 1 domain RK93_005340 PF04565 RNA polymerase Rpb2, domain 3 RK93_005340 PF04561 RNA polymerase Rpb2, domain 2 RK93_005340 PF04563 RNA polymerase beta subunit RK93_005340 PF04560 RNA polymerase Rpb2, domain 7 RK93_005340 PF00562 RNA polymerase Rpb2, domain 6 RK93_005345 PF05175 Methyltransferase small domain RK93_005350 PF16320 Ribosomal protein L7/L12 dimerisation domain RK93_005350 PF00542 Ribosomal protein L7/L12 C-terminal domain RK93_005355 PF00466 Ribosomal protein L10 RK93_005365 PF00687 Ribosomal protein L1p/L10e family RK93_005370 PF03946 Ribosomal protein L11, N-terminal domain RK93_005370 PF00298 Ribosomal protein L11, RNA binding domain RK93_005375 PF00467 KOW motif RK93_005375 PF02357 Transcription termination factor nusG RK93_005380 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RK93_005385 PF00471 Ribosomal protein L33 RK93_005400 PF08032 RNA 2'-O ribose methyltransferase substrate binding RK93_005400 PF00588 SpoU rRNA Methylase family RK93_005405 PF00636 Ribonuclease III domain RK93_005410 PF09190 DALR domain RK93_005410 PF01406 tRNA synthetases class I (C) catalytic domain RK93_005415 PF00132 Bacterial transferase hexapeptide (six repeats) RK93_005425 PF00749 tRNA synthetases class I (E and Q), catalytic domain RK93_005435 PF18073 Rubredoxin metal binding domain RK93_005440 PF00004 ATPase family associated with various cellular activities (AAA) RK93_005440 PF07724 AAA domain (Cdc48 subfamily) RK93_005440 PF17871 AAA lid domain RK93_005440 PF02861 Clp amino terminal domain, pathogenicity island component RK93_005440 PF10431 C-terminal, D2-small domain, of ClpB protein RK93_005445 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain RK93_005450 PF02151 UvrB/uvrC motif RK93_005455 PF17727 CtsR C-terminal dimerization domain RK93_005455 PF05848 CtsR N-terminal HTH domain RK93_005460 PF01773 Na+ dependent nucleoside transporter N-terminus RK93_005460 PF07662 Na+ dependent nucleoside transporter C-terminus RK93_005465 PF01174 SNO glutamine amidotransferase family RK93_005470 PF01680 SOR/SNZ family RK93_005475 PF00155 Aminotransferase class I and II RK93_005475 PF00392 Bacterial regulatory proteins, gntR family RK93_005540 PF01336 OB-fold nucleic acid binding domain RK93_005540 PF00152 tRNA synthetases class II (D, K and N) RK93_005550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RK93_005555 PF02152 Dihydroneopterin aldolase RK93_005560 PF00809 Pterin binding enzyme RK93_005565 PF00291 Pyridoxal-phosphate dependent enzyme RK93_005570 PF01430 Hsp33 protein RK93_005575 PF00004 ATPase family associated with various cellular activities (AAA) RK93_005575 PF17862 AAA+ lid domain RK93_005575 PF06480 FtsH Extracellular RK93_005575 PF01434 Peptidase family M41 RK93_005585 PF11734 TilS substrate C-terminal domain RK93_005585 PF01171 PP-loop family RK93_005590 PF00575 S1 RNA binding domain RK93_005600 PF01479 S4 domain RK93_005605 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK93_005605 PF03819 MazG nucleotide pyrophosphohydrolase domain RK93_005610 PF14667 Polysaccharide biosynthesis C-terminal domain RK93_005610 PF01943 Polysaccharide biosynthesis protein RK93_005615 PF00271 Helicase conserved C-terminal domain RK93_005615 PF00270 DEAD/DEAH box helicase RK93_005615 PF03461 TRCF domain RK93_005615 PF17757 UvrB interaction domain RK93_005615 PF02559 CarD-like/TRCF domain RK93_005620 PF01195 Peptidyl-tRNA hydrolase RK93_005625 PF01386 Ribosomal L25p family RK93_005625 PF14693 Ribosomal protein TL5, C-terminal domain RK93_005635 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RK93_005635 PF14572 Phosphoribosyl synthetase-associated domain RK93_005640 PF00132 Bacterial transferase hexapeptide (six repeats) RK93_005640 PF00483 Nucleotidyl transferase RK93_005650 PF04026 SpoVG RK93_005655 PF01042 Endoribonuclease L-PSP RK93_005660 PF09182 Bacterial purine repressor, N-terminal RK93_005660 PF00156 Phosphoribosyl transferase domain RK93_005665 PF00288 GHMP kinases N terminal domain RK93_005665 PF08544 GHMP kinases C terminal RK93_005670 PF06257 Biofilm formation stimulator VEG RK93_005675 PF00398 Ribosomal RNA adenine dimethylase RK93_005680 PF01751 Toprim domain RK93_005680 PF13331 Domain of unknown function (DUF4093) RK93_005685 PF01026 TatD related DNase RK93_005690 PF08264 Anticodon-binding domain of tRNA RK93_005690 PF01588 Putative tRNA binding domain RK93_005690 PF09334 tRNA synthetases class I (M) RK93_005695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK93_005700 PF01541 GIY-YIG catalytic domain RK93_005705 PF05175 Methyltransferase small domain RK93_005710 PF06156 Initiation control protein YabA RK93_005715 PF04468 PSP1 C-terminal conserved region RK93_005720 PF09115 DNA polymerase III, delta subunit, C terminal RK93_005725 PF06153 Cyclic-di-AMP receptor RK93_005730 PF02223 Thymidylate kinase RK93_005735 PF01276 Orn/Lys/Arg decarboxylase, major domain RK93_005735 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RK93_005765 PF02132 RecR protein RK93_005765 PF13662 Toprim domain RK93_005770 PF02575 YbaB/EbfC DNA-binding family RK93_005775 PF12169 DNA polymerase III subunits gamma and tau domain III RK93_005795 PF00392 Bacterial regulatory proteins, gntR family RK93_005795 PF07702 UTRA domain RK93_005800 PF16657 Maltogenic Amylase, C-terminal domain RK93_005800 PF00128 Alpha amylase, catalytic domain RK93_005805 PF00367 phosphotransferase system, EIIB RK93_005805 PF02378 Phosphotransferase system, EIIC RK93_005815 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_005815 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RK93_005820 PF01493 GXGXG motif RK93_005820 PF00310 Glutamine amidotransferases class-II RK93_005820 PF01645 Conserved region in glutamate synthase RK93_005820 PF04898 Glutamate synthase central domain RK93_005825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK93_005825 PF03466 LysR substrate binding domain RK93_005855 PF01476 LysM domain RK93_005855 PF05257 CHAP domain RK93_005860 PF03180 NLPA lipoprotein RK93_005865 PF00528 Binding-protein-dependent transport system inner membrane component RK93_005870 PF00005 ABC transporter RK93_005870 PF09383 NIL domain RK93_005875 PF01053 Cys/Met metabolism PLP-dependent enzyme RK93_005880 PF00291 Pyridoxal-phosphate dependent enzyme RK93_005885 PF00209 Sodium:neurotransmitter symporter family RK93_005895 PF12146 Serine aminopeptidase, S33 RK93_005910 PF10057 Uncharacterized conserved protein (DUF2294) RK93_005915 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) RK93_005920 PF00361 Proton-conducting membrane transporter RK93_005920 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RK93_005940 PF17063 Phenol-soluble modulin alpha 4 peptide RK93_005945 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK93_005945 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK93_005970 PF04507 Csa1 family RK93_005975 PF04507 Csa1 family RK93_005980 PF04507 Csa1 family RK93_005985 PF04507 Csa1 family RK93_005990 PF04507 Csa1 family RK93_005995 PF04507 Csa1 family RK93_006000 PF04507 Csa1 family RK93_006010 PF04507 Csa1 family RK93_006015 PF04507 Csa1 family RK93_006030 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006030 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006040 PF12161 HsdM N-terminal domain RK93_006040 PF02384 N-6 DNA Methylase RK93_006050 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006050 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006055 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006055 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006060 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006060 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006065 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006065 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006070 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006070 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006075 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006075 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006085 PF00872 Transposase, Mutator family RK93_006100 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006100 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006105 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_006105 PF09199 Staphylococcal superantigen-like OB-fold domain RK93_006115 PF06993 Protein of unknown function (DUF1304) RK93_006160 PF00872 Transposase, Mutator family RK93_006165 PF02463 RecF/RecN/SMC N terminal domain RK93_006170 PF00580 UvrD/REP helicase N-terminal domain RK93_006170 PF13361 UvrD-like helicase C-terminal domain RK93_006195 PF18106 Rolling Circle replication initiation protein N-terminal domain RK93_006195 PF02486 Replication initiation factor RK93_006240 PF00877 NlpC/P60 family RK93_006260 PF00009 Elongation factor Tu GTP binding domain RK93_006260 PF03764 Elongation factor G, domain IV RK93_006260 PF14492 Elongation Factor G, domain II RK93_006260 PF00679 Elongation factor G C-terminus RK93_006300 PF00589 Phage integrase family RK93_006300 PF14659 Phage integrase, N-terminal SAM-like domain RK93_006305 PF00117 Glutamine amidotransferase class-I RK93_006305 PF00958 GMP synthase C terminal domain RK93_006310 PF00571 CBS domain RK93_006310 PF00478 IMP dehydrogenase / GMP reductase domain RK93_006315 PF00860 Permease family RK93_006325 PF11181 Heat induced stress protein YflT RK93_006350 PF00375 Sodium:dicarboxylate symporter family RK93_006355 PF00881 Nitroreductase family RK93_006360 PF10417 C-terminal domain of 1-Cys peroxiredoxin RK93_006360 PF00578 AhpC/TSA family RK93_006365 PF13192 Thioredoxin domain RK93_006365 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_006425 PF00589 Phage integrase family RK93_006425 PF02899 Phage integrase, N-terminal SAM-like domain RK93_006450 PF10668 Phage terminase small subunit RK93_006450 PF03592 Terminase small subunit RK93_006525 PF02899 Phage integrase, N-terminal SAM-like domain RK93_006525 PF00589 Phage integrase family RK93_006535 PF01084 Ribosomal protein S18 RK93_006540 PF00436 Single-strand binding protein family RK93_006545 PF01250 Ribosomal protein S6 RK93_006560 PF01926 50S ribosome-binding GTPase RK93_006560 PF06071 Protein of unknown function (DUF933) RK93_006565 PF06107 Bacterial protein of unknown function (DUF951) RK93_006570 PF00924 Mechanosensitive ion channel RK93_006575 PF17762 HTH domain found in ParB protein RK93_006575 PF02195 ParB-like nuclease domain RK93_006585 PF01053 Cys/Met metabolism PLP-dependent enzyme RK93_006590 PF01053 Cys/Met metabolism PLP-dependent enzyme RK93_006595 PF02574 Homocysteine S-methyltransferase RK93_006595 PF02219 Methylenetetrahydrofolate reductase RK93_006600 PF08267 Cobalamin-independent synthase, N-terminal domain RK93_006600 PF01717 Cobalamin-independent synthase, Catalytic domain RK93_006610 PF02803 Thiolase, C-terminal domain RK93_006610 PF00108 Thiolase, N-terminal domain RK93_006615 PF06772 Bacterial low temperature requirement A protein (LtrA) RK93_006625 PF00005 ABC transporter RK93_006635 PF01381 Helix-turn-helix RK93_006645 PF02416 mttA/Hcf106 family RK93_006650 PF00902 Sec-independent protein translocase protein (TatC) RK93_006655 PF03239 Iron permease FTR1 family RK93_006660 PF04261 Dyp-type peroxidase family RK93_006665 PF09375 Imelysin RK93_006670 PF13302 Acetyltransferase (GNAT) domain RK93_006680 PF03601 Conserved hypothetical protein 698 RK93_006685 PF03358 NADPH-dependent FMN reductase RK93_006690 PF00296 Luciferase-like monooxygenase RK93_006695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK93_006700 PF07690 Major Facilitator Superfamily RK93_006710 PF01554 MatE RK93_006725 PF03123 CAT RNA binding domain RK93_006725 PF00874 PRD domain RK93_006730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK93_006740 PF03611 PTS system sugar-specific permease component RK93_006750 PF03099 Biotin/lipoate A/B protein ligase family RK93_006750 PF10437 Bacterial lipoate protein ligase C-terminus RK93_006760 PF01661 Macro domain RK93_006765 PF01597 Glycine cleavage H-protein RK93_006770 PF00296 Luciferase-like monooxygenase RK93_006780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RK93_006790 PF04650 YSIRK type signal peptide RK93_006800 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RK93_006805 PF01418 Helix-turn-helix domain, rpiR family RK93_006805 PF01380 SIS domain RK93_006810 PF00480 ROK family RK93_006815 PF00701 Dihydrodipicolinate synthetase family RK93_006820 PF00474 Sodium:solute symporter family RK93_006825 PF01773 Na+ dependent nucleoside transporter N-terminus RK93_006825 PF07662 Na+ dependent nucleoside transporter C-terminus RK93_006830 PF04227 Indigoidine synthase A like protein RK93_006850 PF00005 ABC transporter RK93_006855 PF02687 FtsX-like permease family RK93_006865 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RK93_006875 PF05525 Branched-chain amino acid transport protein RK93_006970 PF00872 Transposase, Mutator family RK93_006980 PF14449 Pre-toxin TG RK93_006995 PF06013 Proteins of 100 residues with WXG RK93_007005 PF01580 FtsK/SpoIIIE family RK93_007005 PF12538 DNA transporter RK93_007010 PF10140 WXG100 protein secretion system (Wss), protein YukC RK93_007015 PF08817 WXG100 protein secretion system (Wss), protein YukD RK93_007020 PF10661 WXG100 protein secretion system (Wss), protein EssA RK93_007030 PF06013 Proteins of 100 residues with WXG RK93_007035 PF01476 LysM domain RK93_007035 PF05257 CHAP domain RK93_007065 PF00005 ABC transporter RK93_007070 PF01551 Peptidase family M23 RK93_007075 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family RK93_007080 PF07690 Major Facilitator Superfamily RK93_007100 PF00356 Bacterial regulatory proteins, lacI family RK93_007100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RK93_007105 PF06800 Sugar transport protein RK93_007110 PF05025 RbsD / FucU transport protein family RK93_007115 PF00294 pfkB family carbohydrate kinase RK93_007115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RK93_007125 PF13649 Methyltransferase domain RK93_007135 PF00232 Glycosyl hydrolase family 1 RK93_007140 PF02378 Phosphotransferase system, EIIC RK93_007140 PF00367 phosphotransferase system, EIIB RK93_007140 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK93_007150 PF00155 Aminotransferase class I and II RK93_007150 PF00392 Bacterial regulatory proteins, gntR family RK93_007155 PF04172 LrgB-like family RK93_007160 PF03788 LrgA family RK93_007165 PF04397 LytTr DNA-binding domain RK93_007165 PF00072 Response regulator receiver domain RK93_007170 PF06580 Histidine kinase RK93_007170 PF07694 5TMR of 5TMR-LYT RK93_007170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_007175 PF04405 Domain of Unknown function (DUF542) RK93_007175 PF01814 Hemerythrin HHE cation binding domain RK93_007180 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 RK93_007180 PF00535 Glycosyl transferase family 2 RK93_007185 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK93_007190 PF00107 Zinc-binding dehydrogenase RK93_007190 PF08240 Alcohol dehydrogenase GroES-like domain RK93_007195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RK93_007200 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK93_007205 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK93_007210 PF00107 Zinc-binding dehydrogenase RK93_007210 PF08240 Alcohol dehydrogenase GroES-like domain RK93_007215 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RK93_007230 PF00107 Zinc-binding dehydrogenase RK93_007230 PF08240 Alcohol dehydrogenase GroES-like domain RK93_007235 PF03611 PTS system sugar-specific permease component RK93_007240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK93_007260 PF01156 Inosine-uridine preferring nucleoside hydrolase RK93_007265 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK93_007265 PF02378 Phosphotransferase system, EIIC RK93_007265 PF00367 phosphotransferase system, EIIB RK93_007275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RK93_007275 PF00056 lactate/malate dehydrogenase, NAD binding domain RK93_007285 PF00175 Oxidoreductase NAD-binding domain RK93_007285 PF00042 Globin RK93_007285 PF00970 Oxidoreductase FAD-binding domain RK93_007300 PF04343 Protein of unknown function, DUF488 RK93_007305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK93_007315 PF01144 Coenzyme A transferase RK93_007320 PF00501 AMP-binding enzyme RK93_007320 PF13193 AMP-binding enzyme C-terminal domain RK93_007325 PF02770 Acyl-CoA dehydrogenase, middle domain RK93_007325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK93_007325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK93_007330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RK93_007330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RK93_007335 PF00108 Thiolase, N-terminal domain RK93_007335 PF02803 Thiolase, C-terminal domain RK93_007345 PF08764 Staphylococcus aureus coagulase RK93_007345 PF04022 Staphylocoagulase repeat RK93_007365 PF04055 Radical SAM superfamily RK93_007370 PF02901 Pyruvate formate lyase-like RK93_007370 PF01228 Glycine radical RK93_007390 PF07690 Major Facilitator Superfamily RK93_007395 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family RK93_007405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK93_007405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK93_007410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RK93_007410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RK93_007415 PF00528 Binding-protein-dependent transport system inner membrane component RK93_007420 PF00528 Binding-protein-dependent transport system inner membrane component RK93_007430 PF17912 MalK OB fold domain RK93_007430 PF03459 TOBE domain RK93_007430 PF00005 ABC transporter RK93_007435 PF01551 Peptidase family M23 RK93_007435 PF08460 Bacterial SH3 domain RK93_007440 PF02525 Flavodoxin-like fold RK93_007445 PF04507 Csa1 family RK93_007460 PF12911 N-terminal TM domain of oligopeptide transport permease C RK93_007460 PF00528 Binding-protein-dependent transport system inner membrane component RK93_007470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RK93_007470 PF00005 ABC transporter RK93_007490 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RK93_007490 PF18766 SWI2/SNF2 ATPase RK93_007490 PF12008 Type I restriction and modification enzyme - subunit R C terminal RK93_007500 PF01380 SIS domain RK93_007500 PF01418 Helix-turn-helix domain, rpiR family RK93_007505 PF02378 Phosphotransferase system, EIIC RK93_007505 PF00367 phosphotransferase system, EIIB RK93_007520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK93_007520 PF02378 Phosphotransferase system, EIIC RK93_007520 PF00367 phosphotransferase system, EIIB RK93_007530 PF00205 Thiamine pyrophosphate enzyme, central domain RK93_007530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK93_007530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK93_007535 PF00857 Isochorismatase family RK93_007540 PF05525 Branched-chain amino acid transport protein RK93_007545 PF00202 Aminotransferase class-III RK93_007550 PF02774 Semialdehyde dehydrogenase, dimerisation domain RK93_007550 PF01118 Semialdehyde dehydrogenase, NAD binding domain RK93_007555 PF01960 ArgJ family RK93_007560 PF00696 Amino acid kinase family RK93_007575 PF00501 AMP-binding enzyme RK93_007575 PF00668 Condensation domain RK93_007575 PF00550 Phosphopantetheine attachment site RK93_007575 PF00975 Thioesterase domain RK93_007575 PF13193 AMP-binding enzyme C-terminal domain RK93_007585 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_007585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_007590 PF10057 Uncharacterized conserved protein (DUF2294) RK93_007595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RK93_007595 PF02770 Acyl-CoA dehydrogenase, middle domain RK93_007595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK93_007600 PF00528 Binding-protein-dependent transport system inner membrane component RK93_007610 PF00005 ABC transporter RK93_007625 PF01545 Cation efflux family RK93_007625 PF16916 Dimerisation domain of Zinc Transporter RK93_007630 PF00171 Aldehyde dehydrogenase family RK93_007635 PF04304 Protein of unknown function (DUF454) RK93_007640 PF03992 Antibiotic biosynthesis monooxygenase RK93_007645 PF02350 UDP-N-acetylglucosamine 2-epimerase RK93_007650 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RK93_007650 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RK93_007650 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RK93_007660 PF02397 Bacterial sugar transferase RK93_007685 PF00132 Bacterial transferase hexapeptide (six repeats) RK93_007690 PF02350 UDP-N-acetylglucosamine 2-epimerase RK93_007695 PF01370 NAD dependent epimerase/dehydratase family RK93_007700 PF08485 Polysaccharide biosynthesis protein C-terminal RK93_007700 PF02719 Polysaccharide biosynthesis protein RK93_007715 PF13614 AAA domain RK93_007720 PF02706 Chain length determinant protein RK93_007725 PF00465 Iron-containing alcohol dehydrogenase RK93_007725 PF00171 Aldehyde dehydrogenase family RK93_007750 PF02486 Replication initiation factor RK93_007755 PF02486 Replication initiation factor RK93_007765 PF00149 Calcineurin-like phosphoesterase RK93_007765 PF02872 5'-nucleotidase, C-terminal domain RK93_007780 PF00005 ABC transporter RK93_007785 PF00528 Binding-protein-dependent transport system inner membrane component RK93_007790 PF00528 Binding-protein-dependent transport system inner membrane component RK93_007795 PF01676 Metalloenzyme superfamily RK93_007800 PF01791 DeoC/LacD family aldolase RK93_007805 PF07690 Major Facilitator Superfamily RK93_007810 PF01048 Phosphorylase superfamily RK93_007820 PF07702 UTRA domain RK93_007820 PF00392 Bacterial regulatory proteins, gntR family RK93_007830 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RK93_007830 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RK93_007845 PF00534 Glycosyl transferases group 1 RK93_007850 PF02397 Bacterial sugar transferase RK93_007855 PF01370 NAD dependent epimerase/dehydratase family RK93_007885 PF02195 ParB-like nuclease domain RK93_007890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RK93_007890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RK93_007895 PF03328 HpcH/HpaI aldolase/citrate lyase family RK93_007900 PF06276 Ferric iron reductase FhuF-like transporter RK93_007900 PF04183 IucA / IucC family RK93_007905 PF04183 IucA / IucC family RK93_007905 PF06276 Ferric iron reductase FhuF-like transporter RK93_007910 PF00083 Sugar (and other) transporter RK93_007910 PF07690 Major Facilitator Superfamily RK93_007915 PF04183 IucA / IucC family RK93_007915 PF06276 Ferric iron reductase FhuF-like transporter RK93_007920 PF02423 Ornithine cyclodeaminase/mu-crystallin family RK93_007925 PF00291 Pyridoxal-phosphate dependent enzyme RK93_007930 PF01497 Periplasmic binding protein RK93_007935 PF01032 FecCD transport family RK93_007940 PF01032 FecCD transport family RK93_007955 PF02216 B domain RK93_007955 PF04650 YSIRK type signal peptide RK93_007955 PF03373 Octapeptide repeat RK93_007955 PF01476 LysM domain RK93_007955 PF00746 LPXTG cell wall anchor motif RK93_007960 PF02652 L-lactate permease RK93_007970 PF00155 Aminotransferase class I and II RK93_007970 PF00392 Bacterial regulatory proteins, gntR family RK93_007975 PF00892 EamA-like transporter family RK93_007980 PF06100 MCRA family RK93_007985 PF02690 Na+/Pi-cotransporter RK93_007990 PF07690 Major Facilitator Superfamily RK93_007995 PF01546 Peptidase family M20/M25/M40 RK93_007995 PF07687 Peptidase dimerisation domain RK93_008000 PF12833 Helix-turn-helix domain RK93_008005 PF04507 Csa1 family RK93_008010 PF04507 Csa1 family RK93_008015 PF04507 Csa1 family RK93_008020 PF00388 Phosphatidylinositol-specific phospholipase C, X domain RK93_008040 PF03466 LysR substrate binding domain RK93_008040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK93_008055 PF03358 NADPH-dependent FMN reductase RK93_008075 PF01207 Dihydrouridine synthase (Dus) RK93_008095 PF13401 AAA domain RK93_008100 PF09299 Mu transposase, C-terminal RK93_008100 PF00665 Integrase core domain RK93_008105 PF02796 Helix-turn-helix domain of resolvase RK93_008105 PF00239 Resolvase, N terminal domain RK93_008110 PF03965 Penicillinase repressor RK93_008115 PF00905 Penicillin binding protein transpeptidase domain RK93_008115 PF05569 BlaR1 peptidase M56 RK93_008120 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RK93_008135 PF00753 Metallo-beta-lactamase superfamily RK93_008140 PF13686 DsrE/DsrF/DrsH-like family RK93_008145 PF02583 Metal-sensitive transcriptional repressor RK93_008150 PF01925 Sulfite exporter TauE/SafE RK93_008160 PF01207 Dihydrouridine synthase (Dus) RK93_008190 PF00069 Protein kinase domain RK93_008190 PF00211 Adenylate and Guanylate cyclase catalytic domain RK93_008250 PF00905 Penicillin binding protein transpeptidase domain RK93_008250 PF05569 BlaR1 peptidase M56 RK93_008255 PF05223 NTF2-like N-terminal transpeptidase domain RK93_008255 PF03717 Penicillin-binding Protein dimerisation domain RK93_008255 PF00905 Penicillin binding protein transpeptidase domain RK93_008260 PF01575 MaoC like domain RK93_008265 PF03009 Glycerophosphoryl diester phosphodiesterase family RK93_008270 PF13610 DDE domain RK93_008275 PF07827 KNTase C-terminal domain RK93_008280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK93_008285 PF01076 Plasmid recombination enzyme RK93_008290 PF01446 Replication protein RK93_008295 PF01446 Replication protein RK93_008300 PF13610 DDE domain RK93_008315 PF02590 Predicted SPOUT methyltransferase RK93_008320 PF02872 5'-nucleotidase, C-terminal domain RK93_008320 PF00149 Calcineurin-like phosphoesterase RK93_008330 PF00753 Metallo-beta-lactamase superfamily RK93_008340 PF07435 YycH protein RK93_008345 PF00672 HAMP domain RK93_008345 PF13426 PAS domain RK93_008345 PF00512 His Kinase A (phospho-acceptor) domain RK93_008345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_008350 PF00486 Transcriptional regulatory protein, C terminal RK93_008350 PF00072 Response regulator receiver domain RK93_008365 PF00709 Adenylosuccinate synthetase RK93_008375 PF00772 DnaB-like helicase N terminal domain RK93_008375 PF03796 DnaB-like helicase C terminal domain RK93_008380 PF03948 Ribosomal protein L9, C-terminal domain RK93_008380 PF01281 Ribosomal protein L9, N-terminal domain RK93_008385 PF01368 DHH family RK93_008385 PF02272 DHHA1 domain RK93_008395 PF00561 alpha/beta hydrolase fold RK93_008410 PF02403 Seryl-tRNA synthetase N-terminal domain RK93_008410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK93_008420 PF00221 Aromatic amino acid lyase RK93_008425 PF01256 Carbohydrate kinase RK93_008430 PF03989 DNA gyrase C-terminal domain, beta-propeller RK93_008430 PF00521 DNA gyrase/topoisomerase IV, subunit A RK93_008435 PF00204 DNA gyrase B RK93_008435 PF00986 DNA gyrase B subunit, carboxyl terminus RK93_008435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_008435 PF01751 Toprim domain RK93_008440 PF02463 RecF/RecN/SMC N terminal domain RK93_008450 PF02768 DNA polymerase III beta subunit, C-terminal domain RK93_008450 PF00712 DNA polymerase III beta subunit, N-terminal domain RK93_008450 PF02767 DNA polymerase III beta subunit, central domain RK93_008455 PF11638 DnaA N-terminal domain RK93_008455 PF08299 Bacterial dnaA protein helix-turn-helix RK93_008455 PF00308 Bacterial dnaA protein RK93_008460 PF00468 Ribosomal protein L34 RK93_008465 PF00825 Ribonuclease P RK93_008470 PF01926 50S ribosome-binding GTPase RK93_008470 PF12631 MnmE helical domain RK93_008470 PF10396 GTP-binding protein TrmE N-terminus RK93_008475 PF01134 Glucose inhibited division protein A RK93_008475 PF13932 GidA associated domain RK93_008480 PF02527 rRNA small subunit methyltransferase G RK93_008485 PF02195 ParB-like nuclease domain RK93_008485 PF17762 HTH domain found in ParB protein RK93_008510 PF00313 'Cold-shock' DNA-binding domain RK93_008540 PF02687 FtsX-like permease family RK93_008545 PF00005 ABC transporter RK93_008555 PF00797 N-acetyltransferase RK93_008560 PF03824 High-affinity nickel-transport protein RK93_008570 PF00892 EamA-like transporter family RK93_008575 PF00939 Sodium:sulfate symporter transmembrane region RK93_008595 PF01470 Pyroglutamyl peptidase RK93_008605 PF08450 SMP-30/Gluconolactonase/LRE-like region RK93_008610 PF04264 YceI-like domain RK93_008620 PF07155 ECF-type riboflavin transporter, S component RK93_008625 PF12558 ATP-binding cassette cobalt transporter RK93_008625 PF00005 ABC transporter RK93_008645 PF13393 Histidyl-tRNA synthetase RK93_008650 PF01634 ATP phosphoribosyltransferase RK93_008655 PF00815 Histidinol dehydrogenase RK93_008660 PF00155 Aminotransferase class I and II RK93_008665 PF00475 Imidazoleglycerol-phosphate dehydratase RK93_008670 PF00117 Glutamine amidotransferase class-I RK93_008675 PF00977 Histidine biosynthesis protein RK93_008680 PF00977 Histidine biosynthesis protein RK93_008685 PF01502 Phosphoribosyl-AMP cyclohydrolase RK93_008685 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RK93_008695 PF04650 YSIRK type signal peptide RK93_008705 PF01757 Acyltransferase family RK93_008710 PF01522 Polysaccharide deacetylase RK93_008720 PF00535 Glycosyl transferase family 2 RK93_008725 PF00440 Bacterial regulatory proteins, tetR family RK93_008725 PF18665 Tetracyclin repressor-like, C-terminal domain RK93_008730 PF02706 Chain length determinant protein RK93_008735 PF13614 AAA domain RK93_008750 PF01641 SelR domain RK93_008750 PF01625 Peptide methionine sulfoxide reductase RK93_008755 PF01613 Flavin reductase like domain RK93_008775 PF01613 Flavin reductase like domain RK93_008780 PF00746 LPXTG cell wall anchor motif RK93_008780 PF00746 LPXTG cell wall anchor motif RK93_008785 PF00344 SecY translocase RK93_008790 PF16993 Accessory Sec system protein Asp1 RK93_008795 PF16929 Accessory Sec system GspB-transporter RK93_008800 PF15432 Accessory Sec secretory system ASP3 RK93_008805 PF07516 SecA Wing and Scaffold domain RK93_008805 PF07517 SecA DEAD-like domain RK93_008805 PF01043 SecA preprotein cross-linking domain RK93_008810 PF00534 Glycosyl transferases group 1 RK93_008820 PF01468 GA module RK93_008825 PF00550 Phosphopantetheine attachment site RK93_008825 PF00857 Isochorismatase family RK93_008830 PF05257 CHAP domain RK93_008830 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK93_008835 PF01061 ABC-2 type transporter RK93_008840 PF01238 Phosphomannose isomerase type I RK93_008845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK93_008845 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK93_008845 PF02378 Phosphotransferase system, EIIC RK93_008850 PF08279 HTH domain RK93_008850 PF00874 PRD domain RK93_008850 PF05043 Mga helix-turn-helix domain RK93_008850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK93_008865 PF07504 Fungalysin/Thermolysin Propeptide Motif RK93_008865 PF01447 Thermolysin metallopeptidase, catalytic domain RK93_008865 PF03413 Peptidase propeptide and YPEB domain RK93_008865 PF02868 Thermolysin metallopeptidase, alpha-helical domain RK93_008870 PF01316 Arginine repressor, DNA binding domain RK93_008870 PF02863 Arginine repressor, C-terminal domain RK93_008885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RK93_008885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RK93_008890 PF13520 Amino acid permease RK93_008895 PF00696 Amino acid kinase family RK93_008900 PF13545 Crp-like helix-turn-helix domain RK93_008900 PF00027 Cyclic nucleotide-binding domain RK93_008905 PF00746 LPXTG cell wall anchor motif RK93_008905 PF04650 YSIRK type signal peptide RK93_008905 PF17961 Bacterial Ig domain RK93_008905 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_008915 PF01047 MarR family RK93_008925 PF00245 Alkaline phosphatase RK93_008935 PF00072 Response regulator receiver domain RK93_008935 PF00486 Transcriptional regulatory protein, C terminal RK93_008940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_008945 PF00005 ABC transporter RK93_008970 PF00255 Glutathione peroxidase RK93_008980 PF00175 Oxidoreductase NAD-binding domain RK93_008980 PF00258 Flavodoxin RK93_008980 PF00667 FAD binding domain RK93_008985 PF14824 Sirohaem biosynthesis protein central RK93_008995 PF03600 Citrate transporter RK93_009000 PF03477 ATP cone domain RK93_009000 PF13597 Anaerobic ribonucleoside-triphosphate reductase RK93_009020 PF02028 BCCT, betaine/carnitine/choline family transporter RK93_009045 PF05199 GMC oxidoreductase RK93_009045 PF00732 GMC oxidoreductase RK93_009060 PF00501 AMP-binding enzyme RK93_009060 PF13193 AMP-binding enzyme C-terminal domain RK93_009070 PF06039 Malate:quinone oxidoreductase (Mqo) RK93_009075 PF00274 Fructose-bisphosphate aldolase class-I RK93_009085 PF00202 Aminotransferase class-III RK93_009090 PF13520 Amino acid permease RK93_009100 PF00056 lactate/malate dehydrogenase, NAD binding domain RK93_009100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RK93_009105 PF03306 Alpha-acetolactate decarboxylase RK93_009110 PF02558 Ketopantoate reductase PanE/ApbA RK93_009110 PF08546 Ketopantoate reductase PanE/ApbA C terminal RK93_009115 PF02548 Ketopantoate hydroxymethyltransferase RK93_009120 PF02569 Pantoate-beta-alanine ligase RK93_009125 PF02261 Aspartate decarboxylase RK93_009150 PF02677 Epoxyqueuosine reductase QueH RK93_009160 PF01180 Dihydroorotate dehydrogenase RK93_009200 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK93_009200 PF07683 Cobalamin synthesis protein cobW C-terminal domain RK93_009205 PF00561 alpha/beta hydrolase fold RK93_009215 PF00106 short chain dehydrogenase RK93_009220 PF00440 Bacterial regulatory proteins, tetR family RK93_009240 PF05979 Bacterial protein of unknown function (DUF896) RK93_009265 PF01464 Transglycosylase SLT domain RK93_009275 PF01757 Acyltransferase family RK93_009290 PF01593 Flavin containing amine oxidoreductase RK93_009295 PF00535 Glycosyl transferase family 2 RK93_009305 PF01593 Flavin containing amine oxidoreductase RK93_009310 PF00155 Aminotransferase class I and II RK93_009315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_009315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_009320 PF00403 Heavy-metal-associated domain RK93_009325 PF00403 Heavy-metal-associated domain RK93_009335 PF14602 Hexapeptide repeat of succinyl-transferase RK93_009335 PF12464 Maltose acetyltransferase RK93_009335 PF00132 Bacterial transferase hexapeptide (six repeats) RK93_009340 PF00171 Aldehyde dehydrogenase family RK93_009355 PF03176 MMPL family RK93_009365 PF07670 Nucleoside recognition RK93_009365 PF17910 FeoB cytosolic helical domain RK93_009365 PF07664 Ferrous iron transport protein B C terminus RK93_009365 PF02421 Ferrous iron transport protein B RK93_009375 PF17871 AAA lid domain RK93_009375 PF00004 ATPase family associated with various cellular activities (AAA) RK93_009375 PF07724 AAA domain (Cdc48 subfamily) RK93_009375 PF10431 C-terminal, D2-small domain, of ClpB protein RK93_009380 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RK93_009380 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RK93_009385 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal RK93_009385 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal RK93_009390 PF00368 Hydroxymethylglutaryl-coenzyme A reductase RK93_009410 PF05257 CHAP domain RK93_009420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK93_009420 PF03466 LysR substrate binding domain RK93_009425 PF03788 LrgA family RK93_009430 PF04172 LrgB-like family RK93_009435 PF00205 Thiamine pyrophosphate enzyme, central domain RK93_009435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK93_009435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK93_009440 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RK93_009440 PF00367 phosphotransferase system, EIIB RK93_009440 PF02378 Phosphotransferase system, EIIC RK93_009455 PF07859 alpha/beta hydrolase fold RK93_009455 PF00934 PE family RK93_009460 PF00892 EamA-like transporter family RK93_009475 PF03315 Serine dehydratase beta chain RK93_009475 PF01842 ACT domain RK93_009480 PF03313 Serine dehydratase alpha chain RK93_009500 PF04203 Sortase domain RK93_009510 PF00005 ABC transporter RK93_009520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_009520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_009525 PF00881 Nitroreductase family RK93_009530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK93_009540 PF01047 MarR family RK93_009545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK93_009550 PF01738 Dienelactone hydrolase family RK93_009560 PF06874 Firmicute fructose-1,6-bisphosphatase RK93_009570 PF00005 ABC transporter RK93_009585 PF01047 MarR family RK93_009590 PF07690 Major Facilitator Superfamily RK93_009600 PF09335 SNARE associated Golgi protein RK93_009605 PF07690 Major Facilitator Superfamily RK93_009615 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RK93_009620 PF04607 Region found in RelA / SpoT proteins RK93_009625 PF13411 MerR HTH family regulatory protein RK93_009630 PF07729 FCD domain RK93_009630 PF00392 Bacterial regulatory proteins, gntR family RK93_009635 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RK93_009635 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RK93_009640 PF02447 GntP family permease RK93_009655 PF17961 Bacterial Ig domain RK93_009655 PF04650 YSIRK type signal peptide RK93_009655 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_009655 PF00746 LPXTG cell wall anchor motif RK93_009655 PF02986 Fibronectin binding repeat RK93_009660 PF04650 YSIRK type signal peptide RK93_009660 PF00746 LPXTG cell wall anchor motif RK93_009660 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RK93_009660 PF17961 Bacterial Ig domain RK93_009660 PF02986 Fibronectin binding repeat RK93_009665 PF00483 Nucleotidyl transferase RK93_009675 PF13463 Winged helix DNA-binding domain RK93_009710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK93_009710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK93_009710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK93_009710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK93_009715 PF00293 NUDIX domain RK93_009730 PF04507 Csa1 family RK93_009735 PF04507 Csa1 family RK93_009760 PF04507 Csa1 family RK93_009785 PF00106 short chain dehydrogenase RK93_009810 PF02627 Carboxymuconolactone decarboxylase family RK93_009815 PF03806 AbgT putative transporter family RK93_009840 PF10100 Staphylopine dehydrogenase RK93_009845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RK93_009850 PF00528 Binding-protein-dependent transport system inner membrane component RK93_009855 PF12911 N-terminal TM domain of oligopeptide transport permease C RK93_009855 PF00528 Binding-protein-dependent transport system inner membrane component RK93_009860 PF00005 ABC transporter RK93_009865 PF00005 ABC transporter RK93_009870 PF07690 Major Facilitator Superfamily RK93_009880 PF01645 Conserved region in glutamate synthase RK93_009885 PF06998 Protein of unknown function (DUF1307) RK93_009900 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RK93_009905 PF05343 M42 glutamyl aminopeptidase RK93_009910 PF00005 ABC transporter RK93_009915 PF03649 Uncharacterised protein family (UPF0014) RK93_009920 PF07690 Major Facilitator Superfamily RK93_009925 PF00135 Carboxylesterase family RK93_009930 PF13520 Amino acid permease RK93_009940 PF08818 Domain of unknown function (DU1801) RK93_009955 PF00571 CBS domain RK93_009955 PF00005 ABC transporter RK93_009960 PF00528 Binding-protein-dependent transport system inner membrane component RK93_009965 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RK93_009970 PF00528 Binding-protein-dependent transport system inner membrane component RK93_009975 PF07690 Major Facilitator Superfamily RK93_009980 PF02558 Ketopantoate reductase PanE/ApbA RK93_009980 PF08546 Ketopantoate reductase PanE/ApbA C terminal RK93_009995 PF00144 Beta-lactamase RK93_010005 PF13520 Amino acid permease RK93_010015 PF00999 Sodium/hydrogen exchanger family RK93_010020 PF00324 Amino acid permease RK93_010040 PF07690 Major Facilitator Superfamily RK93_010050 PF02595 Glycerate kinase family RK93_010070 PF04954 Siderophore-interacting protein RK93_010070 PF08021 Siderophore-interacting FAD-binding domain RK93_010070 PF00005 ABC transporter RK93_010070 PF00664 ABC transporter transmembrane region RK93_010075 PF00005 ABC transporter RK93_010075 PF00664 ABC transporter transmembrane region RK93_010095 PF00202 Aminotransferase class-III RK93_010100 PF04055 Radical SAM superfamily RK93_010100 PF06968 Biotin and Thiamin Synthesis associated domain RK93_010105 PF00155 Aminotransferase class I and II RK93_010110 PF03744 6-carboxyhexanoate--CoA ligase RK93_010120 PF07968 Leukocidin/Hemolysin toxin family RK93_010125 PF07968 Leukocidin/Hemolysin toxin family RK93_010130 PF07968 Leukocidin/Hemolysin toxin family RK93_010145 PF11621 C3 binding domain 4 of IgG-bind protein SBI RK93_010145 PF02216 B domain RK93_010155 PF16916 Dimerisation domain of Zinc Transporter RK93_010155 PF01545 Cation efflux family RK93_010160 PF00300 Histidine phosphatase superfamily (branch 1) RK93_010175 PF07690 Major Facilitator Superfamily RK93_010180 PF00497 Bacterial extracellular solute-binding proteins, family 3 RK93_010185 PF00528 Binding-protein-dependent transport system inner membrane component RK93_010190 PF00005 ABC transporter RK93_010195 PF02388 FemAB family RK93_010220 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system RK93_010230 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RK93_010230 PF01297 Zinc-uptake complex component A periplasmic RK93_010245 PF01226 Formate/nitrite transporter RK93_010250 PF00583 Acetyltransferase (GNAT) family RK93_010260 PF04324 BFD-like [2Fe-2S] binding domain RK93_010260 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RK93_010260 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RK93_010260 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_010260 PF18267 Rubredoxin NAD+ reductase C-terminal domain RK93_010265 PF00355 Rieske [2Fe-2S] domain RK93_010270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RK93_010275 PF14710 Respiratory nitrate reductase alpha N-terminal RK93_010275 PF01568 Molydopterin dinucleotide binding domain RK93_010275 PF00384 Molybdopterin oxidoreductase RK93_010280 PF14711 Respiratory nitrate reductase beta C-terminal RK93_010280 PF13247 4Fe-4S dicluster domain RK93_010290 PF02665 Nitrate reductase gamma subunit RK93_010300 PF07730 Histidine kinase RK93_010300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_010305 PF00196 Bacterial regulatory proteins, luxR family RK93_010305 PF00072 Response regulator receiver domain RK93_010310 PF07739 TipAS antibiotic-recognition domain RK93_010310 PF13411 MerR HTH family regulatory protein RK93_010320 PF07690 Major Facilitator Superfamily RK93_010325 PF00011 Hsp20/alpha crystallin family RK93_010330 PF01047 MarR family RK93_010340 PF00375 Sodium:dicarboxylate symporter family RK93_010350 PF16242 Pyridoxamine 5'-phosphate oxidase like RK93_010365 PF02378 Phosphotransferase system, EIIC RK93_010365 PF00367 phosphotransferase system, EIIB RK93_010400 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_010405 PF00583 Acetyltransferase (GNAT) family RK93_010410 PF00107 Zinc-binding dehydrogenase RK93_010410 PF08240 Alcohol dehydrogenase GroES-like domain RK93_010415 PF13673 Acetyltransferase (GNAT) domain RK93_010425 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RK93_010430 PF02652 L-lactate permease RK93_010435 PF06039 Malate:quinone oxidoreductase (Mqo) RK93_010445 PF04397 LytTr DNA-binding domain RK93_010450 PF00672 HAMP domain RK93_010450 PF00512 His Kinase A (phospho-acceptor) domain RK93_010450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_010455 PF00072 Response regulator receiver domain RK93_010455 PF00486 Transcriptional regulatory protein, C terminal RK93_010460 PF02687 FtsX-like permease family RK93_010465 PF00005 ABC transporter RK93_010480 PF12802 MarR family RK93_010500 PF07690 Major Facilitator Superfamily RK93_010515 PF07690 Major Facilitator Superfamily RK93_010525 PF00934 PE family RK93_010525 PF07859 alpha/beta hydrolase fold RK93_010540 PF01544 CorA-like Mg2+ transporter protein RK93_010545 PF01070 FMN-dependent dehydrogenase RK93_010550 PF03616 Sodium/glutamate symporter RK93_010560 PF02245 Methylpurine-DNA glycosylase (MPG) RK93_010565 PF05656 Protein of unknown function (DUF805) RK93_010570 PF13732 Domain of unknown function (DUF4162) RK93_010570 PF00005 ABC transporter RK93_010585 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RK93_010595 PF03475 3-alpha domain RK93_010595 PF03473 MOSC domain RK93_010600 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RK93_010610 PF00491 Arginase family RK93_010615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RK93_010620 PF03466 LysR substrate binding domain RK93_010620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RK93_010625 PF17391 Urocanase N-terminal domain RK93_010625 PF17392 Urocanase C-terminal domain RK93_010625 PF01175 Urocanase Rossmann-like domain RK93_010630 PF01979 Amidohydrolase family RK93_010635 PF07687 Peptidase dimerisation domain RK93_010635 PF01546 Peptidase family M20/M25/M40 RK93_010660 PF01418 Helix-turn-helix domain, rpiR family RK93_010660 PF01380 SIS domain RK93_010665 PF00367 phosphotransferase system, EIIB RK93_010665 PF02378 Phosphotransferase system, EIIC RK93_010675 PF01758 Sodium Bile acid symporter family RK93_010680 PF13419 Haloacid dehalogenase-like hydrolase RK93_010700 PF00324 Amino acid permease RK93_010715 PF02517 CPBP intramembrane metalloprotease RK93_010735 PF03816 Cell envelope-related transcriptional attenuator domain RK93_010740 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RK93_010740 PF12838 4Fe-4S dicluster domain RK93_010740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RK93_010740 PF00384 Molybdopterin oxidoreductase RK93_010740 PF01568 Molydopterin dinucleotide binding domain RK93_010755 PF13457 GW (Gly-Tryp) dipeptide domain RK93_010755 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK93_010760 PF01494 FAD binding domain RK93_010765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_010765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_010775 PF05257 CHAP domain RK93_010785 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain RK93_010785 PF02558 Ketopantoate reductase PanE/ApbA RK93_010790 PF03553 Na+/H+ antiporter family RK93_010800 PF05257 CHAP domain RK93_010830 PF01774 UreD urease accessory protein RK93_010835 PF02492 CobW/HypB/UreG, nucleotide-binding domain RK93_010840 PF01730 UreF RK93_010845 PF02814 UreE urease accessory protein, N-terminal domain RK93_010845 PF05194 UreE urease accessory protein, C-terminal domain RK93_010850 PF01979 Amidohydrolase family RK93_010850 PF00449 Urease alpha-subunit, N-terminal domain RK93_010855 PF00699 Urease beta subunit RK93_010860 PF00547 Urease, gamma subunit RK93_010865 PF03253 Urea transporter RK93_010870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RK93_010870 PF02770 Acyl-CoA dehydrogenase, middle domain RK93_010870 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RK93_010880 PF01156 Inosine-uridine preferring nucleoside hydrolase RK93_010885 PF02632 BioY family RK93_010895 PF02634 FdhD/NarQ family RK93_010905 PF00528 Binding-protein-dependent transport system inner membrane component RK93_010910 PF03459 TOBE domain RK93_010910 PF00005 ABC transporter RK93_010915 PF00899 ThiF family RK93_010920 PF00994 Probable molybdopterin binding domain RK93_010925 PF01967 MoaC family RK93_010930 PF03453 MoeA N-terminal region (domain I and II) RK93_010930 PF03454 MoeA C-terminal region (domain IV) RK93_010930 PF00994 Probable molybdopterin binding domain RK93_010935 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RK93_010940 PF02391 MoaE protein RK93_010945 PF02597 ThiS family RK93_010950 PF12804 MobA-like NTP transferase domain RK93_010955 PF06463 Molybdenum Cofactor Synthesis C RK93_010955 PF04055 Radical SAM superfamily RK93_010980 PF01047 MarR family RK93_010990 PF01047 MarR family RK93_011005 PF02388 FemAB family RK93_011010 PF00873 AcrB/AcrD/AcrF family RK93_011035 PF06800 Sugar transport protein RK93_011050 PF01751 Toprim domain RK93_011050 PF01131 DNA topoisomerase RK93_011055 PF00860 Permease family RK93_011065 PF00338 Ribosomal protein S10p/S20e RK93_011070 PF00297 Ribosomal protein L3 RK93_011075 PF00573 Ribosomal protein L4/L1 family RK93_011080 PF00276 Ribosomal protein L23 RK93_011085 PF00181 Ribosomal Proteins L2, RNA binding domain RK93_011085 PF03947 Ribosomal Proteins L2, C-terminal domain RK93_011090 PF00203 Ribosomal protein S19 RK93_011095 PF00237 Ribosomal protein L22p/L17e RK93_011100 PF07650 KH domain RK93_011100 PF00189 Ribosomal protein S3, C-terminal domain RK93_011105 PF00252 Ribosomal protein L16p/L10e RK93_011110 PF00831 Ribosomal L29 protein RK93_011115 PF00366 Ribosomal protein S17 RK93_011120 PF00238 Ribosomal protein L14p/L23e RK93_011125 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RK93_011125 PF00467 KOW motif RK93_011130 PF00281 Ribosomal protein L5 RK93_011130 PF00673 ribosomal L5P family C-terminus RK93_011135 PF00253 Ribosomal protein S14p/S29e RK93_011140 PF00410 Ribosomal protein S8 RK93_011145 PF00347 Ribosomal protein L6 RK93_011150 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RK93_011155 PF03719 Ribosomal protein S5, C-terminal domain RK93_011155 PF00333 Ribosomal protein S5, N-terminal domain RK93_011160 PF00327 Ribosomal protein L30p/L7e RK93_011165 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RK93_011170 PF00344 SecY translocase RK93_011175 PF05191 Adenylate kinase, active site lid RK93_011180 PF01176 Translation initiation factor 1A / IF-1 RK93_011185 PF00444 Ribosomal protein L36 RK93_011190 PF00416 Ribosomal protein S13/S18 RK93_011195 PF00411 Ribosomal protein S11 RK93_011200 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RK93_011200 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RK93_011200 PF01000 RNA polymerase Rpb3/RpoA insert domain RK93_011205 PF01196 Ribosomal protein L17 RK93_011210 PF00005 ABC transporter RK93_011215 PF00005 ABC transporter RK93_011220 PF02361 Cobalt transport protein RK93_011225 PF01416 tRNA pseudouridine synthase RK93_011230 PF00572 Ribosomal protein L13 RK93_011235 PF00380 Ribosomal protein S9/S16 RK93_011260 PF00872 Transposase, Mutator family RK93_011265 PF00004 ATPase family associated with various cellular activities (AAA) RK93_011265 PF02861 Clp amino terminal domain, pathogenicity island component RK93_011265 PF10431 C-terminal, D2-small domain, of ClpB protein RK93_011265 PF17871 AAA lid domain RK93_011265 PF07724 AAA domain (Cdc48 subfamily) RK93_011285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK93_011285 PF00205 Thiamine pyrophosphate enzyme, central domain RK93_011285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK93_011290 PF03306 Alpha-acetolactate decarboxylase RK93_011300 PF05116 Sucrose-6F-phosphate phosphohydrolase RK93_011310 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RK93_011310 PF02278 Polysaccharide lyase family 8, super-sandwich domain RK93_011310 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RK93_011320 PF13411 MerR HTH family regulatory protein RK93_011325 PF00248 Aldo/keto reductase family RK93_011345 PF02146 Sir2 family RK93_011350 PF08220 DeoR-like helix-turn-helix domain RK93_011350 PF00455 DeoR C terminal sensor domain RK93_011355 PF02502 Ribose/Galactose Isomerase RK93_011360 PF02502 Ribose/Galactose Isomerase RK93_011365 PF00294 pfkB family carbohydrate kinase RK93_011370 PF01791 DeoC/LacD family aldolase RK93_011375 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RK93_011380 PF02378 Phosphotransferase system, EIIC RK93_011380 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK93_011385 PF00232 Glycosyl hydrolase family 1 RK93_011395 PF16884 N-terminal domain of oxidoreductase RK93_011395 PF00107 Zinc-binding dehydrogenase RK93_011400 PF00107 Zinc-binding dehydrogenase RK93_011400 PF08240 Alcohol dehydrogenase GroES-like domain RK93_011405 PF02028 BCCT, betaine/carnitine/choline family transporter RK93_011420 PF03780 Asp23 family, cell envelope-related function RK93_011435 PF05977 Transmembrane secretion effector RK93_011440 PF04183 IucA / IucC family RK93_011440 PF06276 Ferric iron reductase FhuF-like transporter RK93_011455 PF01497 Periplasmic binding protein RK93_011460 PF01032 FecCD transport family RK93_011465 PF01032 FecCD transport family RK93_011480 PF04307 LexA-binding, inner membrane-associated putative hydrolase RK93_011485 PF01704 UTP--glucose-1-phosphate uridylyltransferase RK93_011490 PF03006 Haemolysin-III related RK93_011495 PF07690 Major Facilitator Superfamily RK93_011500 PF17080 Multidrug Resistance efflux pump RK93_011505 PF07690 Major Facilitator Superfamily RK93_011510 PF10609 NUBPL iron-transfer P-loop NTPase RK93_011580 PF00491 Arginase family RK93_011585 PF02457 DisA bacterial checkpoint controller nucleotide-binding RK93_011595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RK93_011595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RK93_011595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RK93_011595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RK93_011600 PF01468 GA module RK93_011600 PF07564 Domain of Unknown Function (DUF1542) RK93_011605 PF08125 Mannitol dehydrogenase C-terminal domain RK93_011605 PF01232 Mannitol dehydrogenase Rossmann domain RK93_011610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK93_011615 PF08279 HTH domain RK93_011615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK93_011615 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RK93_011615 PF00874 PRD domain RK93_011615 PF05043 Mga helix-turn-helix domain RK93_011620 PF02378 Phosphotransferase system, EIIC RK93_011620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RK93_011625 PF01380 SIS domain RK93_011630 PF00005 ABC transporter RK93_011650 PF00239 Resolvase, N terminal domain RK93_011650 PF02796 Helix-turn-helix domain of resolvase RK93_011665 PF16916 Dimerisation domain of Zinc Transporter RK93_011665 PF01545 Cation efflux family RK93_011670 PF01022 Bacterial regulatory protein, arsR family RK93_011675 PF13460 NAD(P)H-binding RK93_011680 PF01238 Phosphomannose isomerase type I RK93_011700 PF00210 Ferritin-like domain RK93_011705 PF01048 Phosphorylase superfamily RK93_011710 PF01791 DeoC/LacD family aldolase RK93_011720 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RK93_011720 PF02885 Glycosyl transferase family, helical bundle domain RK93_011720 PF00591 Glycosyl transferase family, a/b domain RK93_011730 PF02664 S-Ribosylhomocysteinase (LuxS) RK93_011750 PF03630 Fumble RK93_011760 PF05066 HB1, ASXL, restriction endonuclease HTH domain RK93_011765 PF00117 Glutamine amidotransferase class-I RK93_011765 PF06418 CTP synthase N-terminus RK93_011775 PF01116 Fructose-bisphosphate aldolase class-II RK93_011780 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK93_011790 PF00171 Aldehyde dehydrogenase family RK93_011795 PF07498 Rho termination factor, N-terminal domain RK93_011795 PF07497 Rho termination factor, RNA-binding domain RK93_011795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK93_011800 PF01197 Ribosomal protein L31 RK93_011810 PF00265 Thymidine kinase RK93_011815 PF03462 PCRF domain RK93_011815 PF00472 RF-1 domain RK93_011820 PF17827 PrmC N-terminal domain RK93_011820 PF05175 Methyltransferase small domain RK93_011825 PF01300 Telomere recombination RK93_011825 PF03481 Putative GTP-binding controlling metal-binding RK93_011830 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK93_011835 PF04260 Protein of unknown function (DUF436) RK93_011840 PF00464 Serine hydroxymethyltransferase RK93_011850 PF02350 UDP-N-acetylglucosamine 2-epimerase RK93_011860 PF00119 ATP synthase A chain RK93_011865 PF00137 ATP synthase subunit C RK93_011870 PF00430 ATP synthase B/B' CF(0) RK93_011875 PF00213 ATP synthase delta (OSCP) subunit RK93_011880 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK93_011880 PF00306 ATP synthase alpha/beta chain, C terminal domain RK93_011880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK93_011885 PF00231 ATP synthase RK93_011890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RK93_011890 PF02874 ATP synthase alpha/beta family, beta-barrel domain RK93_011895 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RK93_011895 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RK93_011910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RK93_011915 PF07977 FabA-like domain RK93_011925 PF00436 Single-strand binding protein family RK93_011930 PF06737 Transglycosylase-like domain RK93_011935 PF03070 TENA/THI-4/PQQC family RK93_011940 PF08543 Phosphomethylpyrimidine kinase RK93_011945 PF02110 Hydroxyethylthiazole kinase family RK93_011950 PF02581 Thiamine monophosphate synthase RK93_011955 PF02096 60Kd inner membrane protein RK93_011975 PF01966 HD domain RK93_011980 PF13091 PLD-like domain RK93_011980 PF13396 Phospholipase_D-nuclease N-terminal RK93_011985 PF02583 Metal-sensitive transcriptional repressor RK93_012000 PF01098 Cell cycle protein RK93_012005 PF07478 D-ala D-ala ligase C-terminus RK93_012005 PF01820 D-ala D-ala ligase N-terminus RK93_012010 PF08245 Mur ligase middle domain RK93_012010 PF02875 Mur ligase family, glutamate ligase domain RK93_012010 PF01225 Mur ligase family, catalytic domain RK93_012015 PF00270 DEAD/DEAH box helicase RK93_012015 PF00271 Helicase conserved C-terminal domain RK93_012020 PF00072 Response regulator receiver domain RK93_012020 PF00486 Transcriptional regulatory protein, C terminal RK93_012025 PF02702 Osmosensitive K+ channel His kinase sensor domain RK93_012025 PF00512 His Kinase A (phospho-acceptor) domain RK93_012025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_012025 PF13493 Domain of unknown function (DUF4118) RK93_012035 PF03814 Potassium-transporting ATPase A subunit RK93_012045 PF02669 K+-transporting ATPase, c chain RK93_012055 PF03703 Bacterial PH domain RK93_012065 PF01648 4'-phosphopantetheinyl transferase superfamily RK93_012070 PF01168 Alanine racemase, N-terminal domain RK93_012070 PF00842 Alanine racemase, C-terminal domain RK93_012080 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RK93_012095 PF01740 STAS domain RK93_012100 PF13581 Histidine kinase-like ATPase domain RK93_012105 PF04542 Sigma-70 region 2 RK93_012105 PF04539 Sigma-70 region 3 RK93_012105 PF04545 Sigma-70, region 4 RK93_012110 PF16921 Tex protein YqgF-like domain RK93_012110 PF09371 Tex-like protein N-terminal domain RK93_012110 PF00575 S1 RNA binding domain RK93_012110 PF17674 HHH domain RK93_012115 PF10263 SprT-like family RK93_012115 PF17283 SprT-like zinc ribbon domain RK93_012150 PF00585 C-terminal regulatory domain of Threonine dehydratase RK93_012150 PF00291 Pyridoxal-phosphate dependent enzyme RK93_012155 PF00694 Aconitase C-terminal domain RK93_012160 PF00330 Aconitase family (aconitate hydratase) RK93_012165 PF00180 Isocitrate/isopropylmalate dehydrogenase RK93_012170 PF08502 LeuA allosteric (dimerisation) domain RK93_012170 PF00682 HMGL-like RK93_012175 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RK93_012175 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RK93_012185 PF00205 Thiamine pyrophosphate enzyme, central domain RK93_012185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RK93_012185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RK93_012190 PF00920 Dehydratase family RK93_012200 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RK93_012205 PF00814 Glycoprotease family RK93_012210 PF00583 Acetyltransferase (GNAT) family RK93_012215 PF00814 Glycoprotease family RK93_012220 PF00488 MutS domain V RK93_012220 PF05192 MutS domain III RK93_012220 PF05188 MutS domain II RK93_012220 PF05190 MutS family domain IV RK93_012220 PF01624 MutS domain I RK93_012230 PF00005 ABC transporter RK93_012230 PF16326 ABC transporter C-terminal domain RK93_012230 PF12848 ABC transporter RK93_012235 PF06971 Putative DNA-binding protein N-terminus RK93_012235 PF02629 CoA binding domain RK93_012240 PF04143 Sulphur transport RK93_012245 PF01206 Sulfurtransferase TusA RK93_012250 PF00909 Ammonium Transporter Family RK93_012255 PF13407 Periplasmic binding protein domain RK93_012255 PF00356 Bacterial regulatory proteins, lacI family RK93_012260 PF08244 Glycosyl hydrolases family 32 C terminal RK93_012260 PF00251 Glycosyl hydrolases family 32 N-terminal domain RK93_012265 PF00294 pfkB family carbohydrate kinase RK93_012275 PF00072 Response regulator receiver domain RK93_012275 PF04397 LytTr DNA-binding domain RK93_012290 PF04647 Accessory gene regulator B RK93_012295 PF05372 Delta lysin family RK93_012300 PF00795 Carbon-nitrogen hydrolase RK93_012315 PF02517 CPBP intramembrane metalloprotease RK93_012320 PF00166 Chaperonin 10 Kd subunit RK93_012325 PF00118 TCP-1/cpn60 chaperonin family RK93_012340 PF03592 Terminase small subunit RK93_012340 PF10668 Phage terminase small subunit RK93_012360 PF02386 Cation transport protein RK93_012370 PF04072 Leucine carboxyl methyltransferase RK93_012375 PF07687 Peptidase dimerisation domain RK93_012375 PF01546 Peptidase family M20/M25/M40 RK93_012380 PF07968 Leukocidin/Hemolysin toxin family RK93_012385 PF07968 Leukocidin/Hemolysin toxin family RK93_012390 PF03372 Endonuclease/Exonuclease/phosphatase family RK93_012480 PF00436 Single-strand binding protein family RK93_012505 PF01695 IstB-like ATP binding protein RK93_012645 PF04860 Phage portal protein RK93_012700 PF04225 Opacity-associated protein A LysM-like domain RK93_012700 PF01551 Peptidase family M23 RK93_012730 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_012750 PF01510 N-acetylmuramoyl-L-alanine amidase RK93_012750 PF05257 CHAP domain RK93_012750 PF08460 Bacterial SH3 domain RK93_012755 PF02821 Staphylokinase/Streptokinase family RK93_012775 PF05257 CHAP domain RK93_012775 PF08460 Bacterial SH3 domain RK93_012775 PF01520 N-acetylmuramoyl-L-alanine amidase RK93_012780 PF11546 Staphylococcal complement inhibitor SCIN RK93_012800 PF03372 Endonuclease/Exonuclease/phosphatase family RK93_012805 PF03642 MAP domain RK93_012810 PF03642 MAP domain RK93_012830 PF00392 Bacterial regulatory proteins, gntR family RK93_012835 PF00005 ABC transporter RK93_012845 PF00005 ABC transporter RK93_012895 PF10282 Lactonase, 7-bladed beta-propeller RK93_012900 PF00171 Aldehyde dehydrogenase family RK93_012910 PF02833 DHHA2 domain RK93_012910 PF01368 DHH family RK93_012915 PF00857 Isochorismatase family RK93_012925 PF00939 Sodium:sulfate symporter transmembrane region RK93_012935 PF00800 Prephenate dehydratase RK93_012935 PF01842 ACT domain RK93_012940 PF02898 Nitric oxide synthase, oxygenase domain RK93_012945 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RK93_012945 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain RK93_012945 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RK93_012950 PF02540 NAD synthase RK93_012955 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) RK93_012960 PF14044 NETI protein RK93_012970 PF05543 Staphopain peptidase C47 RK93_012970 PF14731 Staphopain proregion RK93_012980 PF10397 Adenylosuccinate lyase C-terminus RK93_012980 PF00206 Lyase RK93_012985 PF01371 Trp repressor protein RK93_012990 PF01884 PcrB family RK93_012995 PF00580 UvrD/REP helicase N-terminal domain RK93_012995 PF13361 UvrD-like helicase C-terminal domain RK93_013000 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RK93_013000 PF12826 Helix-hairpin-helix motif RK93_013000 PF01653 NAD-dependent DNA ligase adenylation domain RK93_013000 PF00533 BRCA1 C Terminus (BRCT) domain RK93_013000 PF03120 NAD-dependent DNA ligase OB-fold domain RK93_013005 PF07537 CamS sex pheromone cAM373 precursor RK93_013010 PF00474 Sodium:solute symporter family RK93_013015 PF02686 Glu-tRNAGln amidotransferase C subunit RK93_013020 PF01425 Amidase RK93_013025 PF02934 GatB/GatE catalytic domain RK93_013025 PF02637 GatB domain RK93_013040 PF00781 Diacylglycerol kinase catalytic domain RK93_013045 PF05958 tRNA (Uracil-5-)-methyltransferase RK93_013055 PF00817 impB/mucB/samB family RK93_013055 PF11799 impB/mucB/samB family C-terminal domain RK93_013070 PF00210 Ferritin-like domain RK93_013075 PF08353 Domain of unknown function (DUF1727) RK93_013075 PF08245 Mur ligase middle domain RK93_013080 PF07685 CobB/CobQ-like glutamine amidotransferase domain RK93_013100 PF06081 Aromatic acid exporter family member 1 RK93_013110 PF00557 Metallopeptidase family M24 RK93_013125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_013125 PF07730 Histidine kinase RK93_013130 PF00196 Bacterial regulatory proteins, luxR family RK93_013130 PF00072 Response regulator receiver domain RK93_013135 PF03631 Virulence factor BrkB RK93_013145 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK93_013150 PF06569 Protein of unknown function (DUF1128) RK93_013155 PF02073 Thermophilic metalloprotease (M29) RK93_013160 PF03061 Thioesterase superfamily RK93_013165 PF08756 YfkB-like domain RK93_013165 PF04055 Radical SAM superfamily RK93_013175 PF01965 DJ-1/PfpI family RK93_013180 PF00912 Transglycosylase RK93_013185 PF02631 RecX family RK93_013195 PF01476 LysM domain RK93_013195 PF00005 ABC transporter RK93_013210 PF04307 LexA-binding, inner membrane-associated putative hydrolase RK93_013215 PF00633 Helix-hairpin-helix motif RK93_013215 PF00730 HhH-GPD superfamily base excision DNA repair protein RK93_013215 PF14815 NUDIX domain RK93_013220 PF04167 Protein of unknown function (DUF402) RK93_013225 PF00664 ABC transporter transmembrane region RK93_013225 PF00005 ABC transporter RK93_013235 PF06081 Aromatic acid exporter family member 1 RK93_013240 PF00202 Aminotransferase class-III RK93_013245 PF00578 AhpC/TSA family RK93_013250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_013250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_013255 PF01475 Ferric uptake regulator family RK93_013430 PF00528 Binding-protein-dependent transport system inner membrane component RK93_013435 PF00005 ABC transporter RK93_013440 PF08331 Domain of unknown function (DUF1730) RK93_013445 PF00588 SpoU rRNA Methylase family RK93_013475 PF10415 Fumarase C C-terminus RK93_013475 PF00206 Lyase RK93_013480 PF01479 S4 domain RK93_013480 PF00849 RNA pseudouridylate synthase RK93_013485 PF07730 Histidine kinase RK93_013485 PF13185 GAF domain RK93_013490 PF00072 Response regulator receiver domain RK93_013490 PF00196 Bacterial regulatory proteins, luxR family RK93_013500 PF04286 Protein of unknown function (DUF445) RK93_013505 PF06133 Control of competence regulator ComK, YlbF/YmcA RK93_013520 PF00149 Calcineurin-like phosphoesterase RK93_013530 PF01966 HD domain RK93_013535 PF00639 PPIC-type PPIASE domain RK93_013555 PF01230 HIT domain RK93_013560 PF00005 ABC transporter RK93_013580 PF01208 Uroporphyrinogen decarboxylase (URO-D) RK93_013665 PF07968 Leukocidin/Hemolysin toxin family RK93_013670 PF07968 Leukocidin/Hemolysin toxin family RK93_013685 PF02052 Gallidermin RK93_013690 PF14028 Lantibiotic biosynthesis dehydratase C-term RK93_013690 PF04738 Lantibiotic dehydratase, N terminus RK93_013695 PF05147 Lanthionine synthetase C-like protein RK93_013700 PF02441 Flavoprotein RK93_013705 PF00082 Subtilase family RK93_013710 PF00005 ABC transporter RK93_013735 PF00089 Trypsin RK93_013740 PF00089 Trypsin RK93_013745 PF00089 Trypsin RK93_013760 PF00089 Trypsin RK93_013775 PF12161 HsdM N-terminal domain RK93_013775 PF02384 N-6 DNA Methylase RK93_013870 PF00501 AMP-binding enzyme RK93_013870 PF13193 AMP-binding enzyme C-terminal domain RK93_013880 PF01809 Putative membrane protein insertion efficiency factor RK93_013890 PF00326 Prolyl oligopeptidase family RK93_013895 PF01797 Transposase IS200 like RK93_013900 PF01293 Phosphoenolpyruvate carboxykinase RK93_013905 PF00438 S-adenosylmethionine synthetase, N-terminal domain RK93_013905 PF02772 S-adenosylmethionine synthetase, central domain RK93_013905 PF02773 S-adenosylmethionine synthetase, C-terminal domain RK93_013915 PF00248 Aldo/keto reductase family RK93_013925 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RK93_013930 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RK93_013940 PF00923 Transaldolase/Fructose-6-phosphate aldolase RK93_013960 PF00196 Bacterial regulatory proteins, luxR family RK93_013960 PF04542 Sigma-70 region 2 RK93_013970 PF13457 GW (Gly-Tryp) dipeptide domain RK93_013970 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RK93_013975 PF01451 Low molecular weight phosphotyrosine protein phosphatase RK93_013980 PF02040 Arsenical pump membrane protein RK93_013985 PF01022 Bacterial regulatory protein, arsR family RK93_013995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK93_013995 PF01872 RibD C-terminal domain RK93_014000 PF00677 Lumazine binding domain RK93_014005 PF00925 GTP cyclohydrolase II RK93_014005 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RK93_014010 PF00885 6,7-dimethyl-8-ribityllumazine synthase RK93_014015 PF01619 Proline dehydrogenase RK93_014030 PF12146 Serine aminopeptidase, S33 RK93_014040 PF00872 Transposase, Mutator family RK93_014045 PF01047 MarR family RK93_014050 PF06962 Putative rRNA methylase RK93_014055 PF16199 Radical_SAM C-terminal domain RK93_014055 PF04055 Radical SAM superfamily RK93_014060 PF07690 Major Facilitator Superfamily RK93_014065 PF00133 tRNA synthetases class I (I, L, M and V) RK93_014065 PF09334 tRNA synthetases class I (M) RK93_014065 PF08264 Anticodon-binding domain of tRNA RK93_014065 PF13603 Leucyl-tRNA synthetase, Domain 2 RK93_014075 PF01468 GA module RK93_014075 PF04650 YSIRK type signal peptide RK93_014075 PF07564 Domain of Unknown Function (DUF1542) RK93_014085 PF14667 Polysaccharide biosynthesis C-terminal domain RK93_014085 PF01943 Polysaccharide biosynthesis protein RK93_014090 PF00849 RNA pseudouridylate synthase RK93_014090 PF01479 S4 domain RK93_014100 PF01546 Peptidase family M20/M25/M40 RK93_014105 PF01063 Amino-transferase class IV RK93_014110 PF01636 Phosphotransferase enzyme family RK93_014115 PF02390 Putative methyltransferase RK93_014125 PF00872 Transposase, Mutator family RK93_014130 PF00753 Metallo-beta-lactamase superfamily RK93_014140 PF05343 M42 glutamyl aminopeptidase RK93_014145 PF00085 Thioredoxin RK93_014150 PF07285 Protein of unknown function (DUF1444) RK93_014155 PF14794 Domain of unknown function (DUF4479) RK93_014155 PF01588 Putative tRNA binding domain RK93_014160 PF09397 Ftsk gamma domain RK93_014160 PF17854 FtsK alpha domain RK93_014160 PF01580 FtsK/SpoIIIE family RK93_014165 PF01225 Mur ligase family, catalytic domain RK93_014165 PF02875 Mur ligase family, glutamate ligase domain RK93_014165 PF08245 Mur ligase middle domain RK93_014170 PF06103 Bacterial protein of unknown function (DUF948) RK93_014185 PF00793 DAHP synthetase I family RK93_014185 PF01817 Chorismate mutase type II RK93_014195 PF00356 Bacterial regulatory proteins, lacI family RK93_014200 PF00850 Histone deacetylase domain RK93_014205 PF00583 Acetyltransferase (GNAT) family RK93_014210 PF13193 AMP-binding enzyme C-terminal domain RK93_014210 PF00501 AMP-binding enzyme RK93_014215 PF01268 Formate--tetrahydrofolate ligase RK93_014225 PF05031 Iron Transport-associated domain RK93_014225 PF04650 YSIRK type signal peptide RK93_014235 PF00912 Transglycosylase RK93_014235 PF00905 Penicillin binding protein transpeptidase domain RK93_014240 PF01479 S4 domain RK93_014240 PF00579 tRNA synthetases class I (W and Y) RK93_014245 PF13180 PDZ domain RK93_014250 PF01553 Acyltransferase RK93_014255 PF00367 phosphotransferase system, EIIB RK93_014255 PF02378 Phosphotransferase system, EIIC RK93_014270 PF01842 ACT domain RK93_014270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RK93_014270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RK93_014275 PF00266 Aminotransferase class-V RK93_014280 PF02566 OsmC-like protein RK93_014285 PF03009 Glycerophosphoryl diester phosphodiesterase family RK93_014295 PF00163 Ribosomal protein S4/S9 N-terminal domain RK93_014295 PF01479 S4 domain RK93_014305 PF13185 GAF domain RK93_014310 PF06160 Septation ring formation regulator, EzrA RK93_014320 PF00266 Aminotransferase class-V RK93_014325 PF02568 Thiamine biosynthesis protein (ThiI) RK93_014325 PF02926 THUMP domain RK93_014330 PF01925 Sulfite exporter TauE/SafE RK93_014335 PF08534 Redoxin RK93_014340 PF02384 N-6 DNA Methylase RK93_014345 PF00871 Acetokinase family RK93_014350 PF00582 Universal stress protein family RK93_014355 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RK93_014355 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RK93_014365 PF01321 Creatinase/Prolidase N-terminal domain RK93_014365 PF00557 Metallopeptidase family M24 RK93_014380 PF00392 Bacterial regulatory proteins, gntR family RK93_014380 PF00571 CBS domain RK93_014380 PF03061 Thioesterase superfamily RK93_014380 PF07085 DRTGG domain RK93_014390 PF02272 DHHA1 domain RK93_014390 PF01368 DHH family RK93_014395 PF01336 OB-fold nucleic acid binding domain RK93_014395 PF02811 PHP domain RK93_014395 PF07733 Bacterial DNA polymerase III alpha NTPase domain RK93_014395 PF14579 Helix-hairpin-helix motif RK93_014395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RK93_014400 PF00390 Malic enzyme, N-terminal domain RK93_014400 PF03949 Malic enzyme, NAD binding domain RK93_014405 PF17848 Acetyl-coA carboxylase zinc finger domain RK93_014405 PF01039 Carboxyl transferase domain RK93_014410 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RK93_014415 PF00365 Phosphofructokinase RK93_014420 PF00391 PEP-utilising enzyme, mobile domain RK93_014420 PF00224 Pyruvate kinase, barrel domain RK93_014420 PF02887 Pyruvate kinase, alpha/beta domain RK93_014430 PF00324 Amino acid permease RK93_014435 PF00285 Citrate synthase, C-terminal domain RK93_014440 PF00180 Isocitrate/isopropylmalate dehydrogenase RK93_014450 PF00072 Response regulator receiver domain RK93_014450 PF00486 Transcriptional regulatory protein, C terminal RK93_014455 PF16736 Single Cache-like RK93_014455 PF00512 His Kinase A (phospho-acceptor) domain RK93_014455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_014455 PF00989 PAS fold RK93_014465 PF01367 5'-3' exonuclease, C-terminal SAM fold RK93_014465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RK93_014465 PF00476 DNA polymerase family A RK93_014470 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RK93_014470 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RK93_014470 PF06827 Zinc finger found in FPG and IleRS RK93_014475 PF01121 Dephospho-CoA kinase RK93_014480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK93_014480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RK93_014485 PF03477 ATP cone domain RK93_014495 PF01695 IstB-like ATP binding protein RK93_014495 PF07319 Primosomal protein DnaI N-terminus RK93_014505 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK93_014505 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RK93_014505 PF03129 Anticodon binding domain RK93_014505 PF02824 TGS domain RK93_014510 PF00324 Amino acid permease RK93_014515 PF05198 Translation initiation factor IF-3, N-terminal domain RK93_014515 PF00707 Translation initiation factor IF-3, C-terminal domain RK93_014520 PF01632 Ribosomal protein L35 RK93_014525 PF00453 Ribosomal protein L20 RK93_014550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RK93_014550 PF05697 Bacterial trigger factor protein (TF) RK93_014550 PF05698 Bacterial trigger factor protein (TF) C-terminus RK93_014555 PF10431 C-terminal, D2-small domain, of ClpB protein RK93_014555 PF07724 AAA domain (Cdc48 subfamily) RK93_014555 PF06689 ClpX C4-type zinc finger RK93_014560 PF01926 50S ribosome-binding GTPase RK93_014565 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RK93_014565 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RK93_014565 PF01488 Shikimate / quinate 5-dehydrogenase RK93_014570 PF01578 Cytochrome C assembly protein RK93_014575 PF03900 Porphobilinogen deaminase, C-terminal domain RK93_014575 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RK93_014585 PF00490 Delta-aminolevulinic acid dehydratase RK93_014590 PF00202 Aminotransferase class-III RK93_014605 PF03352 Methyladenine glycosylase RK93_014610 PF10458 Valyl tRNA synthetase tRNA binding arm RK93_014610 PF08264 Anticodon-binding domain of tRNA RK93_014610 PF00133 tRNA synthetases class I (I, L, M and V) RK93_014615 PF02875 Mur ligase family, glutamate ligase domain RK93_014615 PF08245 Mur ligase middle domain RK93_014625 PF06750 Bacterial Peptidase A24 N-terminal domain RK93_014625 PF01478 Type IV leader peptidase family RK93_014630 PF04002 RadC-like JAB domain RK93_014665 PF00829 Ribosomal prokaryotic L21 protein RK93_014670 PF04327 Cysteine protease Prp RK93_014675 PF01016 Ribosomal L27 protein RK93_014680 PF01018 GTP1/OBG RK93_014680 PF09269 Domain of unknown function (DUF1967) RK93_014680 PF01926 50S ribosome-binding GTPase RK93_014690 PF01330 RuvA N terminal domain RK93_014690 PF07499 RuvA, C-terminal domain RK93_014695 PF05491 RuvB C-terminal winged helix domain RK93_014695 PF05496 Holliday junction DNA helicase RuvB P-loop domain RK93_014695 PF17864 RuvB AAA lid domain RK93_014700 PF02547 Queuosine biosynthesis protein RK93_014705 PF01702 Queuine tRNA-ribosyltransferase RK93_014710 PF02699 Preprotein translocase subunit RK93_014715 PF02355 Protein export membrane protein RK93_014715 PF07549 SecD/SecF GG Motif RK93_014720 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RK93_014720 PF17768 RecJ OB domain RK93_014720 PF02272 DHHA1 domain RK93_014720 PF01368 DHH family RK93_014725 PF00156 Phosphoribosyl transferase domain RK93_014730 PF02824 TGS domain RK93_014730 PF13291 ACT domain RK93_014730 PF04607 Region found in RelA / SpoT proteins RK93_014735 PF02580 D-Tyr-tRNA(Tyr) deacylase RK93_014740 PF01520 N-acetylmuramoyl-L-alanine amidase RK93_014740 PF08239 Bacterial SH3 domain RK93_014745 PF03129 Anticodon binding domain RK93_014745 PF13393 Histidyl-tRNA synthetase RK93_014750 PF01336 OB-fold nucleic acid binding domain RK93_014750 PF02938 GAD domain RK93_014750 PF00152 tRNA synthetases class II (D, K and N) RK93_014765 PF00899 ThiF family RK93_014770 PF12002 MgsA AAA+ ATPase C terminal RK93_014770 PF05496 Holliday junction DNA helicase RuvB P-loop domain RK93_014770 PF16193 AAA C-terminal domain RK93_014775 PF02082 Transcriptional regulator RK93_014780 PF05532 CsbD-like RK93_014790 PF00296 Luciferase-like monooxygenase RK93_014795 PF00266 Aminotransferase class-V RK93_014810 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain RK93_014810 PF14490 Helix-hairpin-helix containing domain RK93_014810 PF13538 UvrD-like helicase C-terminal domain RK93_014815 PF01411 tRNA synthetases class II (A) RK93_014815 PF02272 DHHA1 domain RK93_014815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RK93_014820 PF06135 IreB regulatory phosphoprotein RK93_014825 PF03652 Holliday junction resolvase RK93_014830 PF06949 Protein of unknown function (DUF1292) RK93_014850 PF00485 Phosphoribulokinase / Uridine kinase family RK93_014855 PF01272 Transcription elongation factor, GreA/GreB, C-term RK93_014855 PF03449 Transcription elongation factor, N-terminal RK93_014860 PF02682 Carboxyltransferase domain, subdomain C and D RK93_014865 PF02626 Carboxyltransferase domain, subdomain A and B RK93_014870 PF00364 Biotin-requiring enzyme RK93_014875 PF00289 Biotin carboxylase, N-terminal domain RK93_014875 PF02785 Biotin carboxylase C-terminal domain RK93_014875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK93_014880 PF03746 LamB/YcsF family RK93_014885 PF01566 Natural resistance-associated macrophage protein RK93_014890 PF12728 Helix-turn-helix domain RK93_014890 PF02661 Fic/DOC family RK93_014895 PF02876 Staphylococcal/Streptococcal toxin, beta-grasp domain RK93_014905 PF01048 Phosphorylase superfamily RK93_014915 PF01926 50S ribosome-binding GTPase RK93_014920 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RK93_014920 PF01488 Shikimate / quinate 5-dehydrogenase RK93_014920 PF08501 Shikimate dehydrogenase substrate binding domain RK93_014925 PF01985 CRS1 / YhbY (CRM) domain RK93_014930 PF01467 Cytidylyltransferase-like RK93_014935 PF01966 HD domain RK93_014945 PF13649 Methyltransferase domain RK93_014955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK93_014960 PF00753 Metallo-beta-lactamase superfamily RK93_014960 PF03772 Competence protein RK93_014960 PF13567 Domain of unknown function (DUF4131) RK93_014965 PF06144 DNA polymerase III, delta subunit RK93_014970 PF01649 Ribosomal protein S20 RK93_014975 PF00679 Elongation factor G C-terminus RK93_014975 PF00009 Elongation factor Tu GTP binding domain RK93_014975 PF03144 Elongation factor Tu domain 2 RK93_014975 PF06421 GTP-binding protein LepA C-terminus RK93_014985 PF04055 Radical SAM superfamily RK93_014985 PF06969 HemN C-terminal domain RK93_014990 PF01628 HrcA protein C terminal domain RK93_014995 PF01025 GrpE RK93_015000 PF00012 Hsp70 protein RK93_015005 PF01556 DnaJ C terminal domain RK93_015005 PF00226 DnaJ domain RK93_015005 PF00684 DnaJ central domain RK93_015015 PF04452 RNA methyltransferase RK93_015020 PF04055 Radical SAM superfamily RK93_015020 PF01938 TRAM domain RK93_015020 PF00919 Uncharacterized protein family UPF0004 RK93_015025 PF01165 Ribosomal protein S21 RK93_015030 PF01972 Serine dehydrogenase proteinase RK93_015030 PF01957 NfeD-like C-terminal, partner-binding RK93_015035 PF12127 SigmaW regulon antibacterial RK93_015045 PF02562 PhoH-like protein RK93_015050 PF02130 Uncharacterized protein family UPF0054 RK93_015060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RK93_015065 PF07650 KH domain RK93_015065 PF01926 50S ribosome-binding GTPase RK93_015070 PF02565 Recombination protein O C terminal RK93_015070 PF11967 Recombination protein O N terminal RK93_015075 PF03129 Anticodon binding domain RK93_015075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RK93_015080 PF00571 CBS domain RK93_015080 PF08279 HTH domain RK93_015085 PF03618 Kinase/pyrophosphorylase RK93_015090 PF00772 DnaB-like helicase N terminal domain RK93_015090 PF08275 DNA primase catalytic core, N-terminal domain RK93_015090 PF01807 CHC2 zinc finger RK93_015095 PF00140 Sigma-70 factor, region 1.2 RK93_015095 PF03979 Sigma-70 factor, region 1.1 RK93_015095 PF04542 Sigma-70 region 2 RK93_015095 PF04539 Sigma-70 region 3 RK93_015095 PF04545 Sigma-70, region 4 RK93_015100 PF04816 tRNA (adenine(22)-N(1))-methyltransferase RK93_015105 PF01784 NIF3 (NGG1p interacting factor 3) RK93_015110 PF00271 Helicase conserved C-terminal domain RK93_015110 PF00270 DEAD/DEAH box helicase RK93_015115 PF01261 Xylose isomerase-like TIM barrel RK93_015120 PF00005 ABC transporter RK93_015125 PF00950 ABC 3 transport family RK93_015130 PF01475 Ferric uptake regulator family RK93_015135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RK93_015135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RK93_015145 PF00471 Ribosomal protein L33 RK93_015150 PF01812 5-formyltetrahydrofolate cyclo-ligase family RK93_015160 PF06014 Bacterial protein of unknown function (DUF910) RK93_015165 PF00480 ROK family RK93_015170 PF01910 Thiamine-binding protein RK93_015175 PF00753 Metallo-beta-lactamase superfamily RK93_015180 PF00437 Type II/IV secretion system protein RK93_015185 PF00482 Type II secretion system (T2SS), protein F RK93_015190 PF07963 Prokaryotic N-terminal methylation motif RK93_015215 PF01202 Shikimate kinase RK93_015220 PF01571 Aminomethyltransferase folate-binding domain RK93_015220 PF08669 Glycine cleavage T-protein C-terminal barrel domain RK93_015225 PF02347 Glycine cleavage system P-protein RK93_015230 PF00266 Aminotransferase class-V RK93_015235 PF00581 Rhodanese-like domain RK93_015240 PF03099 Biotin/lipoate A/B protein ligase family RK93_015255 PF01321 Creatinase/Prolidase N-terminal domain RK93_015255 PF00557 Metallopeptidase family M24 RK93_015260 PF09285 Elongation factor P, C-terminal RK93_015260 PF01132 Elongation factor P (EF-P) OB domain RK93_015260 PF08207 Elongation factor P (EF-P) KOW-like domain RK93_015265 PF00364 Biotin-requiring enzyme RK93_015270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RK93_015270 PF00289 Biotin carboxylase, N-terminal domain RK93_015270 PF02785 Biotin carboxylase C-terminal domain RK93_015275 PF03780 Asp23 family, cell envelope-related function RK93_015280 PF01029 NusB family RK93_015285 PF02601 Exonuclease VII, large subunit RK93_015285 PF13742 OB-fold nucleic acid binding domain RK93_015290 PF02609 Exonuclease VII small subunit RK93_015295 PF00348 Polyprenyl synthetase RK93_015300 PF02863 Arginine repressor, C-terminal domain RK93_015300 PF01316 Arginine repressor, DNA binding domain RK93_015305 PF13476 AAA domain RK93_015310 PF07992 Pyridine nucleotide-disulphide oxidoreductase RK93_015310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RK93_015315 PF00676 Dehydrogenase E1 component RK93_015320 PF02780 Transketolase, C-terminal domain RK93_015320 PF02779 Transketolase, pyrimidine binding domain RK93_015325 PF02817 e3 binding domain RK93_015325 PF00364 Biotin-requiring enzyme RK93_015325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RK93_015330 PF06491 Disulphide isomerase RK93_015335 PF11728 Putative aromatic acid exporter C-terminal domain RK93_015335 PF06081 Aromatic acid exporter family member 1 RK93_015345 PF01546 Peptidase family M20/M25/M40 RK93_015345 PF07687 Peptidase dimerisation domain RK93_015350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RK93_015350 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RK93_015365 PF00356 Bacterial regulatory proteins, lacI family RK93_015370 PF00128 Alpha amylase, catalytic domain RK93_015370 PF16657 Maltogenic Amylase, C-terminal domain RK93_015380 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RK93_015380 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RK93_015385 PF12706 Beta-lactamase superfamily domain RK93_015390 PF03807 NADP oxidoreductase coenzyme F420-dependent RK93_015390 PF14748 Pyrroline-5-carboxylate reductase dimerisation RK93_015395 PF00106 short chain dehydrogenase RK93_015405 PF00248 Aldo/keto reductase family RK93_015410 PF00293 NUDIX domain RK93_015415 PF01475 Ferric uptake regulator family RK93_015420 PF02899 Phage integrase, N-terminal SAM-like domain RK93_015420 PF00589 Phage integrase family RK93_015430 PF02616 Segregation and condensation protein ScpA RK93_015435 PF04079 Segregation and condensation complex subunit ScpB RK93_015440 PF01479 S4 domain RK93_015440 PF00849 RNA pseudouridylate synthase RK93_015445 PF00486 Transcriptional regulatory protein, C terminal RK93_015445 PF00072 Response regulator receiver domain RK93_015450 PF00512 His Kinase A (phospho-acceptor) domain RK93_015450 PF18698 Histidine kinase sensor domain RK93_015450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RK93_015450 PF00672 HAMP domain RK93_015465 PF14659 Phage integrase, N-terminal SAM-like domain RK93_015465 PF00589 Phage integrase family RK93_015495 PF01381 Helix-turn-helix RK93_015605 PF00692 dUTPase RK93_015680 PF00574 Clp protease