RK93_000060 SM00287 Bacterial SH3 domain homologues RK93_000060 SM00646 RK93_000060 RK93_000120 SM00487 DEAD-like helicases superfamily RK93_000120 SM00490 helicase superfamily c-terminal domain RK93_000125 SM00257 Lysin motif RK93_000140 SM00870 RK93_000140 RK93_000165 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_000180 SM00411 bacterial (prokaryotic) histone like domain RK93_000205 SM00562 RK93_000205 RK93_000230 SM00028 Tetratricopeptide repeats RK93_000235 SM00914 RK93_000235 RK93_000270 SM00479 RK93_000270 RK93_000270 SM00491 RK93_000270 RK93_000285 SM00478 endonuclease III RK93_000285 SM00525 RK93_000285 RK93_000335 SM00981 RK93_000335 RK93_000355 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RK93_000355 SM00475 5'-3' exonuclease RK93_000360 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RK93_000360 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RK93_000380 SM00844 GA module RK93_000405 SM00932 Scaffold protein Nfu/NifU N terminal RK93_000410 SM00567 E-Z type HEAT repeats RK93_000410 SM00932 Scaffold protein Nfu/NifU N terminal RK93_000455 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RK93_000455 SM00245 tail specific protease RK93_000470 SM00014 Acid phosphatase homologues RK93_000475 SM01321 RK93_000475 RK93_000490 SM00448 cheY-homologous receiver domain RK93_000490 SM00862 Transcriptional regulatory protein, C terminal RK93_000495 SM00387 Histidine kinase-like ATPases RK93_000495 SM00388 His Kinase A (phosphoacceptor) domain RK93_000500 SM00861 Transketolase, pyrimidine binding domain RK93_000525 SM00327 von Willebrand factor (vWF) type A domain RK93_000565 SM00357 Cold shock protein domain RK93_000590 SM01005 Alanine racemase, C-terminal domain RK93_000610 SM01130 RK93_000610 RK93_000615 SM00859 Semialdehyde dehydrogenase, NAD binding domain RK93_000625 SM00382 ATPases associated with a variety of cellular activities RK93_000655 SM00382 ATPases associated with a variety of cellular activities RK93_000690 SM00382 ATPases associated with a variety of cellular activities RK93_000695 SM00382 ATPases associated with a variety of cellular activities RK93_000800 SM01061 CAT RNA binding domain RK93_000815 SM00434 DNA Topoisomerase IV RK93_000820 SM00387 Histidine kinase-like ATPases RK93_000820 SM00433 TopoisomeraseII RK93_000825 SM01207 RK93_000825 RK93_000895 SM00861 Transketolase, pyrimidine binding domain RK93_000925 SM01240 RK93_000925 RK93_000940 SM01060 RK93_000940 RK93_000995 SM00318 Staphylococcal nuclease homologues RK93_001005 SM00421 helix_turn_helix, Lux Regulon RK93_001005 SM00448 cheY-homologous receiver domain RK93_001020 SM00382 ATPases associated with a variety of cellular activities RK93_001025 SM00155 Phospholipase D. Active site motifs. RK93_001210 SM01230 RK93_001210 RK93_001215 SM00422 helix_turn_helix, mercury resistance RK93_001270 SM00853 MutL C terminal dimerisation domain RK93_001270 SM01340 RK93_001270 RK93_001275 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RK93_001275 SM00534 ATPase domain of DNA mismatch repair MUTS family RK93_001290 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_001320 SM00322 K homology RNA-binding domain RK93_001320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RK93_001325 SM00382 ATPases associated with a variety of cellular activities RK93_001330 SM00852 Probable molybdopterin binding domain RK93_001340 SM00530 Helix-turn-helix XRE-family like proteins RK93_001365 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_001365 SM00866 RK93_001365 RK93_001370 SM00382 ATPases associated with a variety of cellular activities RK93_001370 SM00843 RK93_001370 RK93_001375 SM00849 Metallo-beta-lactamase superfamily RK93_001385 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_001385 SM00322 K homology RNA-binding domain RK93_001390 SM01387 RK93_001390 RK93_001395 SM00904 Riboflavin kinase RK93_001425 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_001425 SM00322 K homology RNA-binding domain RK93_001440 SM00479 RK93_001440 RK93_001440 SM00481 DNA polymerase alpha chain like domain RK93_001500 SM00382 ATPases associated with a variety of cellular activities RK93_001500 SM01086 C-terminal, D2-small domain, of ClpB protein RK93_001520 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RK93_001520 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RK93_001520 SM00493 RK93_001520 RK93_001545 SM00257 Lysin motif RK93_001550 SM00881 CoA binding domain RK93_001595 SM00382 ATPases associated with a variety of cellular activities RK93_001595 SM00962 SRP54-type protein, GTPase domain RK93_001595 SM00963 SRP54-type protein, helical bundle domain RK93_001605 SM00382 ATPases associated with a variety of cellular activities RK93_001605 SM00962 SRP54-type protein, GTPase domain RK93_001605 SM00963 SRP54-type protein, helical bundle domain RK93_001610 SM00968 SMC proteins Flexible Hinge Domain RK93_001615 SM00358 Double-stranded RNA binding motif RK93_001615 SM00535 Ribonuclease III family RK93_001630 SM00822 RK93_001630 RK93_001635 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RK93_001650 SM00487 DEAD-like helicases superfamily RK93_001650 SM00490 helicase superfamily c-terminal domain RK93_001655 SM01120 RK93_001655 RK93_001655 SM01121 RK93_001655 RK93_001670 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain RK93_001685 SM00220 Serine/Threonine protein kinases, catalytic domain RK93_001685 SM00740 RK93_001685 RK93_001690 SM00331 Sigma factor PP2C-like phosphatases RK93_001690 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RK93_001725 SM00487 DEAD-like helicases superfamily RK93_001725 SM00490 helicase superfamily c-terminal domain RK93_001735 SM01409 RK93_001735 RK93_001740 SM00072 Guanylate kinase homologues. RK93_001765 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RK93_001770 SM00851 MGS-like domain RK93_001770 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RK93_001770 SM01209 RK93_001770 RK93_001775 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RK93_001800 SM00363 S4 RNA-binding domain RK93_001835 SM00363 S4 RNA-binding domain RK93_001860 SM00864 Tubulin/FtsZ family, GTPase domain RK93_001860 SM00865 Tubulin/FtsZ family, C-terminal domain RK93_001865 SM00842 Cell division protein FtsA RK93_001885 SM00740 RK93_001885 RK93_002085 SM00465 GIY-YIG type nucleases (URI domain) RK93_002100 SM00463 Small MutS-related domain RK93_002100 SM00533 DNA-binding domain of DNA mismatch repair MUTS family RK93_002100 SM00534 ATPase domain of DNA mismatch repair MUTS family RK93_002105 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RK93_002105 SM00481 DNA polymerase alpha chain like domain RK93_002105 SM00483 DNA polymerase X family RK93_002130 SM00873 B3/4 domain RK93_002130 SM00874 tRNA synthetase B5 domain RK93_002130 SM00896 Ferredoxin-fold anticodon binding domain RK93_002140 SM00967 RNA 2'-O ribose methyltransferase substrate binding RK93_002175 SM00725 NEAr Transporter domain RK93_002180 SM00725 NEAr Transporter domain RK93_002185 SM00725 NEAr Transporter domain RK93_002190 SM00287 Bacterial SH3 domain homologues RK93_002190 SM00644 RK93_002190 RK93_002210 SM00047 Lysozyme subfamily 2 RK93_002470 SM00530 Helix-turn-helix XRE-family like proteins RK93_002475 SM00530 Helix-turn-helix XRE-family like proteins RK93_002485 SM00857 Resolvase, N terminal domain RK93_002565 SM00878 Biotin carboxylase C-terminal domain RK93_002590 SM00838 Elongation factor G C-terminus RK93_002640 SM00382 ATPases associated with a variety of cellular activities RK93_002645 SM00530 Helix-turn-helix XRE-family like proteins RK93_002665 SM00861 Transketolase, pyrimidine binding domain RK93_002695 SM00849 Metallo-beta-lactamase superfamily RK93_002765 SM00382 ATPases associated with a variety of cellular activities RK93_002775 SM01209 RK93_002775 RK93_002775 SM01210 RK93_002775 RK93_002780 SM00798 AICARFT/IMPCHase bienzyme RK93_002780 SM00851 MGS-like domain RK93_002805 SM01211 RK93_002805 RK93_002825 SM01001 AIR carboxylase RK93_002890 SM00047 Lysozyme subfamily 2 RK93_002890 SM00644 RK93_002890 RK93_002900 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_003055 SM00914 RK93_003055 RK93_003085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RK93_003150 SM00116 Domain in cystathionine beta-synthase and other proteins. RK93_003150 SM00924 MgtE intracellular N domain RK93_003165 SM00954 Region found in RelA / SpoT proteins RK93_003175 SM01118 RK93_003175 RK93_003230 SM00382 ATPases associated with a variety of cellular activities RK93_003235 SM00382 ATPases associated with a variety of cellular activities RK93_003250 SM00382 ATPases associated with a variety of cellular activities RK93_003255 SM00382 ATPases associated with a variety of cellular activities RK93_003275 SM00825 Beta-ketoacyl synthase RK93_003320 SM00382 ATPases associated with a variety of cellular activities RK93_003320 SM01086 C-terminal, D2-small domain, of ClpB protein RK93_003405 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RK93_003420 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_003430 SM01298 RK93_003430 RK93_003575 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_003645 SM00382 ATPases associated with a variety of cellular activities RK93_003735 SM00942 Primase C terminal 1 (PriCT-1) RK93_003760 SM00530 Helix-turn-helix XRE-family like proteins RK93_003765 SM00530 Helix-turn-helix XRE-family like proteins RK93_003805 SM00382 ATPases associated with a variety of cellular activities RK93_003805 SM00930 RK93_003805 RK93_003815 SM00493 RK93_003815 RK93_003875 SM00855 Phosphoglycerate mutase family RK93_003915 SM00357 Cold shock protein domain RK93_003920 SM00318 Staphylococcal nuclease homologues RK93_003980 SM01321 RK93_003980 RK93_003995 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_003995 SM00357 Cold shock protein domain RK93_003995 SM00955 RK93_003995 RK93_004015 SM01192 RK93_004015 RK93_004015 SM01193 RK93_004015 RK93_004035 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK93_004095 SM00028 Tetratricopeptide repeats RK93_004120 SM00487 DEAD-like helicases superfamily RK93_004120 SM00490 helicase superfamily c-terminal domain RK93_004135 SM00257 Lysin motif RK93_004155 SM00957 SecA DEAD-like domain RK93_004155 SM00958 SecA preprotein cross-linking domain RK93_004170 SM00487 DEAD-like helicases superfamily RK93_004170 SM00490 helicase superfamily c-terminal domain RK93_004190 SM00267 diguanylate cyclase RK93_004245 SM00382 ATPases associated with a variety of cellular activities RK93_004315 SM00046 Diacylglycerol kinase catalytic domain (presumed) RK93_004340 SM00382 ATPases associated with a variety of cellular activities RK93_004350 SM00382 ATPases associated with a variety of cellular activities RK93_004360 SM00797 Allophanate hydrolase subunit 2 RK93_004365 SM00796 Allophanate hydrolase subunit 1 RK93_004420 SM00448 cheY-homologous receiver domain RK93_004420 SM00862 Transcriptional regulatory protein, C terminal RK93_004425 SM00387 Histidine kinase-like ATPases RK93_004425 SM00388 His Kinase A (phosphoacceptor) domain RK93_004440 SM01091 Transporter associated domain RK93_004460 SM00420 helix_turn_helix, Deoxyribose operon repressor RK93_004460 SM01134 RK93_004460 RK93_004515 SM00833 Cobalamin synthesis protein cobW C-terminal domain RK93_004520 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_004525 SM00382 ATPases associated with a variety of cellular activities RK93_004530 SM00382 ATPases associated with a variety of cellular activities RK93_004625 SM00342 helix_turn_helix, arabinose operon control protein RK93_004635 SM00257 Lysin motif RK93_004655 SM00382 ATPases associated with a variety of cellular activities RK93_004660 SM00387 Histidine kinase-like ATPases RK93_004665 SM00448 cheY-homologous receiver domain RK93_004665 SM00862 Transcriptional regulatory protein, C terminal RK93_004710 SM01120 RK93_004710 RK93_004730 SM00382 ATPases associated with a variety of cellular activities RK93_004750 SM00382 ATPases associated with a variety of cellular activities RK93_004780 SM00382 ATPases associated with a variety of cellular activities RK93_004795 SM00529 Helix-turn-helix diphteria tox regulatory element RK93_004795 SM00899 RK93_004795 RK93_004800 SM00382 ATPases associated with a variety of cellular activities RK93_004915 SM00478 endonuclease III RK93_004925 SM00836 DALR anticodon binding domain RK93_004925 SM01016 Arginyl tRNA synthetase N terminal dom RK93_004940 SM00829 Enoylreductase RK93_004950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RK93_005135 SM00986 Uracil DNA glycosylase superfamily RK93_005135 SM00987 UreE urease accessory protein, C-terminal domain RK93_005190 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RK93_005315 SM00838 Elongation factor G C-terminus RK93_005315 SM00889 Elongation factor G, domain IV RK93_005335 SM00663 RNA polymerase I subunit A N-terminus RK93_005370 SM00649 Ribosomal protein L11/L12 RK93_005375 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RK93_005375 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RK93_005400 SM00967 RNA 2'-O ribose methyltransferase substrate binding RK93_005405 SM00535 Ribonuclease III family RK93_005410 SM00840 RK93_005410 RK93_005430 SM00670 Large family of predicted nucleotide-binding domains RK93_005435 SM00382 ATPases associated with a variety of cellular activities RK93_005440 SM00382 ATPases associated with a variety of cellular activities RK93_005440 SM01086 C-terminal, D2-small domain, of ClpB protein RK93_005475 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_005555 SM00905 Dihydroneopterin aldolase RK93_005575 SM00382 ATPases associated with a variety of cellular activities RK93_005585 SM00977 TilS substrate C-terminal domain RK93_005590 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_005600 SM00363 S4 RNA-binding domain RK93_005615 SM00487 DEAD-like helicases superfamily RK93_005615 SM00490 helicase superfamily c-terminal domain RK93_005615 SM00982 RK93_005615 RK93_005615 SM01058 CarD-like/TRCF domain RK93_005635 SM01400 RK93_005635 RK93_005675 SM00650 Ribosomal RNA adenine dimethylases RK93_005680 SM00493 RK93_005680 RK93_005700 SM00465 GIY-YIG type nucleases (URI domain) RK93_005765 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RK93_005765 SM00493 RK93_005765 RK93_005775 SM00382 ATPases associated with a variety of cellular activities RK93_005795 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_005795 SM00866 RK93_005795 RK93_005800 SM00642 Alpha-amylase domain RK93_005855 SM00257 Lysin motif RK93_005870 SM00382 ATPases associated with a variety of cellular activities RK93_005870 SM00930 RK93_005870 RK93_005900 SM00014 Acid phosphatase homologues RK93_005945 SM00833 Cobalamin synthesis protein cobW C-terminal domain RK93_006195 SM00530 Helix-turn-helix XRE-family like proteins RK93_006260 SM00889 Elongation factor G, domain IV RK93_006270 SM00530 Helix-turn-helix XRE-family like proteins RK93_006310 SM00116 Domain in cystathionine beta-synthase and other proteins. RK93_006310 SM01240 RK93_006310 RK93_006385 SM00855 Phosphoglycerate mutase family RK93_006490 SM00885 D5 N terminal like RK93_006515 SM00530 Helix-turn-helix XRE-family like proteins RK93_006520 SM00530 Helix-turn-helix XRE-family like proteins RK93_006575 SM00470 ParB-like nuclease domain RK93_006625 SM00382 ATPases associated with a variety of cellular activities RK93_006635 SM00530 Helix-turn-helix XRE-family like proteins RK93_006715 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_006760 SM00506 Appr-1"-p processing enzyme RK93_006815 SM01130 RK93_006815 RK93_006850 SM00382 ATPases associated with a variety of cellular activities RK93_007065 SM00382 ATPases associated with a variety of cellular activities RK93_007100 SM00354 helix_turn _helix lactose operon repressor RK93_007150 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_007150 SM00866 RK93_007150 RK93_007165 SM00448 cheY-homologous receiver domain RK93_007165 SM00850 LytTr DNA-binding domain RK93_007170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RK93_007170 SM00387 Histidine kinase-like ATPases RK93_007230 SM00829 Enoylreductase RK93_007315 SM00882 Coenzyme A transferase RK93_007385 SM00342 helix_turn_helix, arabinose operon control protein RK93_007385 SM00448 cheY-homologous receiver domain RK93_007430 SM00382 ATPases associated with a variety of cellular activities RK93_007470 SM00382 ATPases associated with a variety of cellular activities RK93_007490 SM00487 DEAD-like helicases superfamily RK93_007550 SM00859 Semialdehyde dehydrogenase, NAD binding domain RK93_007610 SM00382 ATPases associated with a variety of cellular activities RK93_007650 SM00984 UDP binding domain RK93_007775 SM00062 Bacterial periplasmic substrate-binding proteins RK93_007780 SM00382 ATPases associated with a variety of cellular activities RK93_007800 SM01133 RK93_007800 RK93_007820 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_007865 SM00822 RK93_007865 RK93_007885 SM00470 ParB-like nuclease domain RK93_007945 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_007955 SM00257 Lysin motif RK93_007970 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_008000 SM00342 helix_turn_helix, arabinose operon control protein RK93_008020 SM00148 Phospholipase C, catalytic domain (part); domain X RK93_008105 SM00857 Resolvase, N terminal domain RK93_008135 SM00450 Rhodanese Homology Domain RK93_008135 SM00849 Metallo-beta-lactamase superfamily RK93_008140 SM00450 Rhodanese Homology Domain RK93_008190 SM00220 Serine/Threonine protein kinases, catalytic domain RK93_008210 SM00857 Resolvase, N terminal domain RK93_008215 SM00857 Resolvase, N terminal domain RK93_008330 SM00849 Metallo-beta-lactamase superfamily RK93_008345 SM00091 PAS domain RK93_008345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RK93_008345 SM00387 Histidine kinase-like ATPases RK93_008345 SM00388 His Kinase A (phosphoacceptor) domain RK93_008350 SM00448 cheY-homologous receiver domain RK93_008350 SM00862 Transcriptional regulatory protein, C terminal RK93_008365 SM00788 Adenylosuccinate synthetase RK93_008385 SM00267 diguanylate cyclase RK93_008430 SM00434 DNA Topoisomerase IV RK93_008435 SM00387 Histidine kinase-like ATPases RK93_008435 SM00433 TopoisomeraseII RK93_008450 SM00480 DNA polymerase III beta subunit RK93_008455 SM00382 ATPases associated with a variety of cellular activities RK93_008455 SM00760 Bacterial dnaA protein helix-turn-helix domain RK93_008475 SM01228 RK93_008475 RK93_008485 SM00470 ParB-like nuclease domain RK93_008505 SM00530 Helix-turn-helix XRE-family like proteins RK93_008510 SM00357 Cold shock protein domain RK93_008545 SM00382 ATPases associated with a variety of cellular activities RK93_008610 SM00867 YceI-like domain RK93_008625 SM00382 ATPases associated with a variety of cellular activities RK93_008755 SM00903 Flavin reductase like domain RK93_008775 SM00903 Flavin reductase like domain RK93_008805 SM00957 SecA DEAD-like domain RK93_008805 SM00958 SecA preprotein cross-linking domain RK93_008830 SM00047 Lysozyme subfamily 2 RK93_008915 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_008925 SM00098 Alkaline phosphatase homologues RK93_008935 SM00448 cheY-homologous receiver domain RK93_008935 SM00862 Transcriptional regulatory protein, C terminal RK93_008940 SM00387 Histidine kinase-like ATPases RK93_008945 SM00382 ATPases associated with a variety of cellular activities RK93_009130 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RK93_009335 SM01266 RK93_009335 RK93_009360 SM00899 RK93_009360 RK93_009375 SM00382 ATPases associated with a variety of cellular activities RK93_009375 SM01086 C-terminal, D2-small domain, of ClpB protein RK93_009510 SM00382 ATPases associated with a variety of cellular activities RK93_009540 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_009570 SM00382 ATPases associated with a variety of cellular activities RK93_009585 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_009620 SM00954 Region found in RelA / SpoT proteins RK93_009625 SM00422 helix_turn_helix, mercury resistance RK93_009630 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_009630 SM00895 RK93_009630 RK93_009725 SM00487 DEAD-like helicases superfamily RK93_009725 SM00490 helicase superfamily c-terminal domain RK93_009860 SM00382 ATPases associated with a variety of cellular activities RK93_009865 SM00382 ATPases associated with a variety of cellular activities RK93_009910 SM00382 ATPases associated with a variety of cellular activities RK93_009955 SM00116 Domain in cystathionine beta-synthase and other proteins. RK93_009955 SM00382 ATPases associated with a variety of cellular activities RK93_010035 SM00871 Bacterial transcription activator, effector binding domain RK93_010070 SM00382 ATPases associated with a variety of cellular activities RK93_010075 SM00382 ATPases associated with a variety of cellular activities RK93_010100 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_010100 SM00876 Biotin and Thiamin Synthesis associated domain RK93_010160 SM00855 Phosphoglycerate mutase family RK93_010180 SM00062 Bacterial periplasmic substrate-binding proteins RK93_010180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RK93_010190 SM00382 ATPases associated with a variety of cellular activities RK93_010275 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RK93_010300 SM00387 Histidine kinase-like ATPases RK93_010305 SM00421 helix_turn_helix, Lux Regulon RK93_010305 SM00448 cheY-homologous receiver domain RK93_010310 SM00422 helix_turn_helix, mercury resistance RK93_010330 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_010355 SM00342 helix_turn_helix, arabinose operon control protein RK93_010410 SM00829 Enoylreductase RK93_010445 SM00850 LytTr DNA-binding domain RK93_010450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RK93_010450 SM00387 Histidine kinase-like ATPases RK93_010450 SM00388 His Kinase A (phosphoacceptor) domain RK93_010455 SM00448 cheY-homologous receiver domain RK93_010455 SM00862 Transcriptional regulatory protein, C terminal RK93_010465 SM00382 ATPases associated with a variety of cellular activities RK93_010480 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_010570 SM00382 ATPases associated with a variety of cellular activities RK93_010725 SM00420 helix_turn_helix, Deoxyribose operon repressor RK93_010740 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RK93_010740 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RK93_010755 SM00047 Lysozyme subfamily 2 RK93_010805 SM00342 helix_turn_helix, arabinose operon control protein RK93_010845 SM00988 UreE urease accessory protein, N-terminal domain RK93_010910 SM00382 ATPases associated with a variety of cellular activities RK93_010920 SM00852 Probable molybdopterin binding domain RK93_010930 SM00852 Probable molybdopterin binding domain RK93_010955 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_010990 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_011050 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RK93_011050 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RK93_011050 SM00493 RK93_011050 RK93_011065 SM01403 RK93_011065 RK93_011085 SM01382 RK93_011085 RK93_011085 SM01383 RK93_011085 RK93_011100 SM00322 K homology RNA-binding domain RK93_011120 SM01374 RK93_011120 RK93_011125 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RK93_011180 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_011200 SM00662 RNA polymerases D RK93_011210 SM00382 ATPases associated with a variety of cellular activities RK93_011215 SM00382 ATPases associated with a variety of cellular activities RK93_011265 SM00382 ATPases associated with a variety of cellular activities RK93_011320 SM00422 helix_turn_helix, mercury resistance RK93_011350 SM00420 helix_turn_helix, Deoxyribose operon repressor RK93_011350 SM01134 RK93_011350 RK93_011370 SM01133 RK93_011370 RK93_011395 SM00829 Enoylreductase RK93_011400 SM00829 Enoylreductase RK93_011630 SM00382 ATPases associated with a variety of cellular activities RK93_011670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RK93_011710 SM01133 RK93_011710 RK93_011720 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RK93_011795 SM00357 Cold shock protein domain RK93_011795 SM00382 ATPases associated with a variety of cellular activities RK93_011795 SM00959 Rho termination factor, N-terminal domain RK93_011815 SM00937 RK93_011815 RK93_011830 SM00226 Low molecular weight phosphatase family RK93_011890 SM00382 ATPases associated with a variety of cellular activities RK93_011975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RK93_011980 SM00155 Phospholipase D. Active site motifs. RK93_012015 SM00487 DEAD-like helicases superfamily RK93_012015 SM00490 helicase superfamily c-terminal domain RK93_012020 SM00448 cheY-homologous receiver domain RK93_012020 SM00862 Transcriptional regulatory protein, C terminal RK93_012025 SM00387 Histidine kinase-like ATPases RK93_012025 SM00388 His Kinase A (phosphoacceptor) domain RK93_012070 SM01005 Alanine racemase, C-terminal domain RK93_012110 SM00316 Ribosomal protein S1-like RNA-binding domain RK93_012110 SM00732 Likely ribonuclease with RNase H fold. RK93_012115 SM00731 SprT homologues. RK93_012165 SM01329 RK93_012165 RK93_012170 SM00917 LeuA allosteric (dimerisation) domain RK93_012220 SM00534 ATPase domain of DNA mismatch repair MUTS family RK93_012230 SM00382 ATPases associated with a variety of cellular activities RK93_012235 SM00881 CoA binding domain RK93_012255 SM00354 helix_turn _helix lactose operon repressor RK93_012260 SM00640 Glycosyl hydrolases family 32 RK93_012275 SM00448 cheY-homologous receiver domain RK93_012275 SM00850 LytTr DNA-binding domain RK93_012285 SM00794 Staphylococcal AgrD protein RK93_012290 SM00793 Accessory gene regulator B RK93_012320 SM00883 Chaperonin 10 Kd subunit RK93_012415 SM00530 Helix-turn-helix XRE-family like proteins RK93_012625 SM00507 HNH nucleases RK93_012685 SM00635 Bacterial Ig-like domain 2 RK93_012775 SM00287 Bacterial SH3 domain homologues RK93_012830 SM00345 helix_turn_helix gluconate operon transcriptional repressor RK93_012835 SM00382 ATPases associated with a variety of cellular activities RK93_012845 SM00382 ATPases associated with a variety of cellular activities RK93_012910 SM01131 RK93_012910 RK93_012920 SM00710 Parallel beta-helix repeats RK93_012980 SM00998 Adenylosuccinate lyase C-terminus RK93_013000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RK93_013000 SM00292 breast cancer carboxy-terminal domain RK93_013000 SM00532 Ligase N family RK93_013025 SM00845 GatB domain RK93_013040 SM00046 Diacylglycerol kinase catalytic domain (presumed) RK93_013060 SM00479 RK93_013060 RK93_013125 SM00387 Histidine kinase-like ATPases RK93_013130 SM00421 helix_turn_helix, Lux Regulon RK93_013130 SM00448 cheY-homologous receiver domain RK93_013145 SM00226 Low molecular weight phosphatase family RK93_013215 SM00478 endonuclease III RK93_013225 SM00382 ATPases associated with a variety of cellular activities RK93_013430 SM00062 Bacterial periplasmic substrate-binding proteins RK93_013435 SM00382 ATPases associated with a variety of cellular activities RK93_013490 SM00421 helix_turn_helix, Lux Regulon RK93_013490 SM00448 cheY-homologous receiver domain RK93_013495 SM00530 Helix-turn-helix XRE-family like proteins RK93_013530 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RK93_013560 SM00382 ATPases associated with a variety of cellular activities RK93_013695 SM01260 RK93_013695 RK93_013710 SM00382 ATPases associated with a variety of cellular activities RK93_013860 SM00894 Excalibur calcium-binding domain RK93_013880 SM01234 RK93_013880 RK93_013895 SM01321 RK93_013895 RK93_013970 SM00047 Lysozyme subfamily 2 RK93_013975 SM00226 Low molecular weight phosphatase family RK93_013985 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RK93_014045 SM00347 helix_turn_helix multiple antibiotic resistance protein RK93_014055 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_014070 SM00450 Rhodanese Homology Domain RK93_014090 SM00363 S4 RNA-binding domain RK93_014130 SM00849 Metallo-beta-lactamase superfamily RK93_014160 SM00843 RK93_014160 RK93_014185 SM00830 Chorismate mutase type II RK93_014195 SM00354 helix_turn _helix lactose operon repressor RK93_014225 SM00725 NEAr Transporter domain RK93_014240 SM00363 S4 RNA-binding domain RK93_014245 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RK93_014250 SM00563 Phosphate acyltransferases RK93_014295 SM00363 S4 RNA-binding domain RK93_014295 SM01390 RK93_014295 RK93_014305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RK93_014325 SM00981 RK93_014325 RK93_014355 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RK93_014355 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RK93_014370 SM00849 Metallo-beta-lactamase superfamily RK93_014380 SM00116 Domain in cystathionine beta-synthase and other proteins. RK93_014395 SM00481 DNA polymerase alpha chain like domain RK93_014400 SM00919 Malic enzyme, NAD binding domain RK93_014400 SM01274 RK93_014400 RK93_014440 SM01329 RK93_014440 RK93_014450 SM00448 cheY-homologous receiver domain RK93_014450 SM00862 Transcriptional regulatory protein, C terminal RK93_014455 SM00387 Histidine kinase-like ATPases RK93_014455 SM00388 His Kinase A (phosphoacceptor) domain RK93_014465 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RK93_014465 SM00474 3'-5' exonuclease RK93_014465 SM00475 5'-3' exonuclease RK93_014465 SM00482 DNA polymerase A domain RK93_014470 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RK93_014470 SM01232 RK93_014470 RK93_014480 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RK93_014505 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RK93_014555 SM00382 ATPases associated with a variety of cellular activities RK93_014555 SM00994 ClpX C4-type zinc finger RK93_014555 SM01086 C-terminal, D2-small domain, of ClpB protein RK93_014585 SM01004 Delta-aminolevulinic acid dehydratase RK93_014690 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RK93_014695 SM00382 ATPases associated with a variety of cellular activities RK93_014710 SM01323 RK93_014710 RK93_014730 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RK93_014730 SM00954 Region found in RelA / SpoT proteins RK93_014740 SM00287 Bacterial SH3 domain homologues RK93_014740 SM00646 RK93_014740 RK93_014770 SM00382 ATPases associated with a variety of cellular activities RK93_014805 SM00028 Tetratricopeptide repeats RK93_014810 SM00382 ATPases associated with a variety of cellular activities RK93_014815 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RK93_014825 SM00732 Likely ribonuclease with RNase H fold. RK93_014860 SM00796 Allophanate hydrolase subunit 1 RK93_014865 SM00797 Allophanate hydrolase subunit 2 RK93_014875 SM00878 Biotin carboxylase C-terminal domain RK93_014925 SM01103 RK93_014925 RK93_014935 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RK93_014950 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RK93_014960 SM00849 Metallo-beta-lactamase superfamily RK93_014975 SM00838 Elongation factor G C-terminus RK93_014985 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_015005 SM00271 DnaJ molecular chaperone homology domain RK93_015020 SM00729 Elongator protein 3, MiaB family, Radical SAM RK93_015080 SM00116 Domain in cystathionine beta-synthase and other proteins. RK93_015090 SM00400 zinc finger RK93_015090 SM00493 RK93_015090 RK93_015110 SM00487 DEAD-like helicases superfamily RK93_015110 SM00490 helicase superfamily c-terminal domain RK93_015115 SM00518 AP endonuclease family 2 RK93_015120 SM00382 ATPases associated with a variety of cellular activities RK93_015175 SM00849 Metallo-beta-lactamase superfamily RK93_015235 SM00450 Rhodanese Homology Domain RK93_015260 SM00841 Elongation factor P, C-terminal RK93_015260 SM01185 RK93_015260 RK93_015270 SM00878 Biotin carboxylase C-terminal domain RK93_015320 SM00861 Transketolase, pyrimidine binding domain RK93_015350 SM01350 RK93_015350 RK93_015365 SM00354 helix_turn _helix lactose operon repressor RK93_015370 SM00642 Alpha-amylase domain RK93_015375 SM00342 helix_turn_helix, arabinose operon control protein RK93_015375 SM00871 Bacterial transcription activator, effector binding domain RK93_015440 SM00363 S4 RNA-binding domain RK93_015445 SM00448 cheY-homologous receiver domain RK93_015445 SM00862 Transcriptional regulatory protein, C terminal RK93_015450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RK93_015450 SM00387 Histidine kinase-like ATPases RK93_015450 SM00388 His Kinase A (phosphoacceptor) domain RK93_015495 SM00530 Helix-turn-helix XRE-family like proteins RK93_015500 SM00530 Helix-turn-helix XRE-family like proteins RK93_015555 SM00482 DNA polymerase A domain RK93_015645 SM00990 RK93_015645 RK93_015650 SM00487 DEAD-like helicases superfamily RK93_015660 SM00507 HNH nucleases RK93_015715 SM00635 Bacterial Ig-like domain 2