locus-tag	class	description
phi_676Z_ORF085	COG0584	glycerophosphoryl diester phosphodiesterase
phi_676Z_ORF110	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
phi_676Z_ORF111	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
phi_676Z_dhlA	COG1201	RNA secondary structure unwinding
phi_676Z_dhlB	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
phi_676Z_nrdI	COG1780	Probably involved in ribonucleotide reductase function
phi_676Z_rec	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
phi_676Z_rncA	COG0420	3'-5' exonuclease activity
phi_676Z_rncB	COG0419	ATPase involved in DNA repair
phi_676Z_tgl	COG1388	LysM domain
phi_676Z_tmpD	COG1705	Flagellar rod assembly protein muramidase FlgJ
phi_676Z_tmpD	COG3942	CHAP domain
phi_676Z_trf	COG0776	regulation of translation