LOCUS HG315669 7648 bp RNA circular PHG 04-JUN-2014 DEFINITION Stenotrophomonas phage phiSMA6 proviral complete genome. ACCESSION HG315669 VERSION HG315669.1 KEYWORDS complete genome. SOURCE Stenotrophomonas phage phiSMA6 ORGANISM Stenotrophomonas phage phiSMA6 Viruses; Monodnaviria; Loebvirae; Hofneiviricota; Faserviricetes; Tubulavirales; Inoviridae; Scuticavirus. REFERENCE 1 AUTHORS Petrova,M., Shcherbatova,N., Kurakov,A. and Mindlin,S. TITLE Genomic characterization and integrative properties of phiSMA6 and phiSMA7, two novel filamentous bacteriophages of Stenotrophomonas maltophilia JOURNAL Arch. Virol. 159 (6), 1293-1303 (2014) PUBMED 24327089 REFERENCE 2 (bases 1 to 7648) AUTHORS Mindlin,S.Z. TITLE Direct Submission JOURNAL Submitted (17-MAY-2013) Mindlin S.Z., molecular genetics of microorganisms, Institute of Molecular genetics Russian Academy of Sciences, 2 Kurchatov sq, 123182 Moscow, RUSSIA FEATURES Location/Qualifiers source 1..7648 /organism="Stenotrophomonas phage phiSMA6" /proviral /mol_type="genomic RNA" /host="Stenotrophomonas maltophilia str. Khak84" /db_xref="taxon:1346893" /identified_by="Petrova M and Mindlin S" gene 1..1056 /gene="rstA" CDS 1..1056 /gene="rstA" /codon_start=1 /transl_table=11 /product="phage replication protein" /protein_id="CDF76784.1" /db_xref="GOA:S0F3F7" /db_xref="InterPro:IPR003491" /db_xref="UniProtKB/TrEMBL:S0F3F7" /translation="MAVDRARFRMAVEGGAGGFSPLSPGEKGQRAAAEIGPGSNTGQK GQQDAIIDYLTIVVPLSALEEVNCKKLDLLLFRIFGFRGEVVAGAIREKNWNFYEQSA VLIDRENEVVGRVGIGGKKSTVCLSLTGMGCKWIRDWARVYKQCSMLDAKITRVDCAH DDYEGERLDVHALREVAAQGGFTEGGCPPRHRFISDEGHNTGCTLYVGGKGHKELCVY EKGKAEGLPSSRWVRAEVRLYGKHMEIPLDVLLNPGAYLRGSYSALQDLIKGVCTRLR TIRKHVEVSAEAMVLWMERQVGPALSVLRGAFGDSWSDFCEARIVRDGHPGRFRGIAK GDALHRFVREELCPSAA" CDS 1038..1316 /note="ORF92" /codon_start=1 /transl_table=11 /product="single-stranded DNA binding protein" /protein_id="CDF76785.1" /db_xref="GOA:S0F2M9" /db_xref="InterPro:IPR003512" /db_xref="InterPro:IPR012340" /db_xref="UniProtKB/TrEMBL:S0F2M9" /translation="MPICRVKSAAVEERHNSKTNTINRSQTVGLDLGNGFELPFRVGL GSRPPYTPGEYDIDPQSFALSQYGDLVLKRYVDLVPLQAKAAAAPAKP" CDS 1320..1523 /note="ORF67" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76786.1" /db_xref="UniProtKB/TrEMBL:S0F2M5" /translation="MAVLIPACREADLDTAAGTCTAVIWIPQPALLPELPIEDAQAIG AKIALLWAVAYVFRLIRKKIEQS" CDS 1435..3327 /note="ORF630" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76787.1" /db_xref="UniProtKB/TrEMBL:S0F309" /translation="MHRPSAQRSRCCGLSRTCSGSFARKSNSPRRTHAQDVQRPEGQG CRAGGCRHRRAGFGSGLRVGWWWRGRGPGGHVHQRRARPGRSDRGCCAVGAGRHQGLQ VGAPRDVTATGGQGRLPPPGLLTPWIGQGAWDGRVDLAVRMARGLRDHLRGLQLMRWV ARVFASAFIRRVAVLLVAALVGWCFSGRAHAAACASYTDQCTEGAAKQGALAWGGAQS KCVAVAGPNGRAGGNVSSKKSEGAGRGYFTVKAECLLNGNVVTYVEPAPPAEQGQWFY TQSCDAQPSYTGTGPWGSGGSAKNGSLGCRNGCDGIWQTNADASKTWTPLGNTCPDDE KKTCETYGDGYYWNSLLKVCEPPEGKCQGGGRPNSLGQCAPEPCPEGMAQQADGTCKK KDNECPAGQVRSPDGKCLPGDGQCAKGEVRGQDGTCKKDADNDGNPDPVNEDSFSGGD DCSAPPSCSGSPIMCGQARIQWRIDCNTRKNRNIAGGTCASMPICTGEKCDAMEYSAL LMQWRSACALEKMAQGNGNGGGDNGDTKAIRDALTGTGGAVTTAPDRPSSDVWAPRSG TPVKPDTGGYGWGRTCPQPPSFEVFGNVIQINTAPLCNWLILGGYFVMGLAALASLRI IASRDA" CDS 3330..3641 /note="ORF103" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76788.1" /db_xref="UniProtKB/TrEMBL:S0F3R9" /translation="MPMLISTLLTALAALFRSKWGPWVAEAMVWLGLSWATNEFLVQP WIDQMEQAMRAGTPGGEFGALVIAYAGLMKFDVACTMIASAVTAKFAVGAAKTFLTKR A" CDS 3643..4845 /note="ORF400" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76789.1" /db_xref="InterPro:IPR008900" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:S0F3F8" /translation="MPIELFTGQPGNGKTALMMERLVAEAKAASRPIFAAGIDGLDPG LATVLDDPRHWNNKDADGNYIVPDGSLIFVDEAWKWFGHLHDATRQQTPRHVLELAEH RHRGLDFVWTTQQPNQLYPFVRGLIGSHAHVVRRFGTKMLDVYRWGELNEEIKSLAKR DMAQRTTRLLPSQVFGQYKSAEVHTIKARIPFKVMLLPVLAIAAIVFAYLAYTSLRPS SFAGGEGKEGTQSASADAAPSPFRPAGAKEDAPRWPTAAAYAKDHLPRISTMPWTAPV FDERQARSDPQLVCMSSLEGLDAQGVRQEASCRCLTEQGTAYELSQPECRTLARNGPV YNPYRERSEERSTQRIEDLERSRPGVATTSAGGVAQHVERSMGTFPESPSYRSDSYMT TAPGPNKL" CDS 4890..5468 /note="ORF192" /codon_start=1 /transl_table=11 /product="trbP-related" /protein_id="CDF76790.1" /db_xref="InterPro:IPR008875" /db_xref="UniProtKB/TrEMBL:S0F2N7" /translation="MTGDHVAKVIYGGYVPGLSEAGRVAFPLFALVMAYNLAQPGADV GKSVRRLALWGAIAQPVHALAFGYWLPLNILLTFGVCAAAVYAACQRNWIVLAFAAVV LPAFVDYQWAGVAFVLLAWLGFRTGRLLLTLVAFAPLCAFNGNLWALVAIPAALGLSH TAWSVPRGRWTFYGYYVAHLACLGLLAPILRP" CDS complement(6031..6369) /note="ORF112" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76791.1" /db_xref="InterPro:IPR021077" /db_xref="UniProtKB/TrEMBL:S0F2N2" /translation="MRDRKLTGPWAGFSFKGGRLVTPEGRELEPQDLAWLSLTAAQAQ EWRRMMESSRAIDKPRNPLSFNAASVVNLSDALAQRRKKRSPGAMAGPDAEPPAAVLP VPGPKRRQRV" CDS complement(6372..6818) /note="ORF148" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76792.1" /db_xref="GOA:S0F314" /db_xref="InterPro:IPR010982" /db_xref="InterPro:IPR021096" /db_xref="UniProtKB/TrEMBL:S0F314" /translation="MRSIDLLLDKAREKCERPSDRALAEKLRVTASAVSKWRKGGVIT EMHATALAAIAGLDGEIVVRVMEEQAETPAQRRVWRSVLDRLSAAAAVLMLVVFAAPG AARAKAIDSQGSSGSDQPHSVYYVRIILGWLARLLPLPRHLLWHGA" CDS 6952..7212 /note="ORF86" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="CDF76793.1" /db_xref="UniProtKB/TrEMBL:S0F3S0" /translation="MIDPFIAFVLLAAIVAVSIGSAKLVSWCLDRRGESARRSAREAA IVAEACAELAATGWTAEDEASFQAIRGQQLVFLKHLQEVRHG" ORIGIN 1 atggccgttg atcgcgctcg cttcaggatg gctgtcgagg gcggggcagg gggcttttcc 61 ccgctttcgc ccggtgaaaa ggggcagcgg gcggcggcgg agattggccc ggggagtaac 121 acgggccaaa agggtcagca agacgcaatc atcgactacc tgaccattgt ggtcccgctc 181 tccgcccttg aggaagtgaa ctgcaagaag ctcgacctct tgctgttccg catcttcggt 241 ttccgtggcg aagttgttgc cggtgcgatt cgtgagaaga actggaactt ctacgagcag 301 tcggcggtgc tgatcgaccg ggaaaacgag gtggttggtc gtgtcggcat cggcggcaag 361 aagagcaccg tatgcctgag cctcaccggt atgggttgca aatggattcg tgactgggcg 421 cgcgtctaca agcagtgctc catgcttgat gccaagatca cccgcgttga ctgcgcgcac 481 gatgactacg agggcgaacg cctggacgtg catgcgctcc gcgaggtagc agctcaaggt 541 ggtttcactg aaggcggatg cccgccgcgc caccgcttca tttccgatga aggccacaac 601 accggctgca cgctttatgt cggcggaaaa ggccacaagg aactgtgcgt atacgagaag 661 gggaaggccg agggcctgcc gtcttcgcgc tgggtgcgcg cggaagttcg cctgtacggc 721 aagcacatgg aaatcccgct ggatgtgctg ttgaacccgg gcgcgtacct gcggggttct 781 tacagcgcgt tgcaggacct catcaagggc gtgtgcactc gactgcgcac gatccgcaag 841 catgtcgaag tatctgccga ggcaatggtg ctctggatgg agcgtcaggt cggcccggcc 901 ctcagtgttc tgcgcggagc gttcggagat tcatggtccg acttctgcga ggcccgcatc 961 gtccgtgacg gtcaccccgg acgttttcgc ggtattgcca agggtgacgc actccatcgt 1021 ttcgtgaggg aagaactatg cccatctgcc gcgtgaagtc cgctgccgtc gaagagcggc 1081 acaacagcaa gaccaacacc atcaatcgtt cgcagaccgt tggcctcgac ctgggcaacg 1141 gattcgaact gccgttccgt gtcggcctcg gctcgcgccc gccgtatacg ccgggtgagt 1201 acgacattga cccgcagtcc ttcgcactga gccagtacgg cgatctggtg ttgaagcgtt 1261 acgtggacct cgttccgctg caggcgaagg ccgcagccgc accggcgaag ccgtaagcca 1321 tggccgtgct gatccccgct tgccgcgaag ccgacctcga cacggccgcg gggacctgca 1381 cggctgtgat ctggattcct cagccggcac tgctgccgga actgccgatt gaggatgcac 1441 aggccatcgg cgcaaagatc gcgctgctgt gggctgtcgc gtacgtgttc cggctcattc 1501 gcaagaaaat cgaacagtcc taggaggaca catgcacaag atgttcaacg ccctgaaggg 1561 caagggtgcc gcgctggcgg ctgtcggcac cgccgcgctg gcttcggctc cggccttcgc 1621 gtcgggtggt ggtggcgtgg acgtgggccc ggtggtcacg tccatcaacg gcgcgctcgg 1681 cccggtcggt cagatcgggg ctgctgtgct gttggtgctg gtaggcatca aggtctacaa 1741 gtgggtgcgc cgcgcgatgt aacggcaacc ggggggcagg gccgactccc tccccccggt 1801 cttctaacgc cctggatagg gcagggggct tgggatggaa gggtggattt ggctgtgcgc 1861 atggctcgtg gcttgcgcga tcatcttcgt ggacttcaac tgatgcgctg ggtggcacgc 1921 gtgtttgctt ccgcgttcat tcggcgagta gcggtactcc tcgttgctgc gcttgtcggc 1981 tggtgcttct cagggcgtgc gcatgccgcc gcgtgtgctt cctacaccga ccaatgcacc 2041 gaaggtgcag ctaaacaggg cgcgttagca tggggcgggg cgcagtcgaa gtgtgtagcg 2101 gtggccgggc cgaatggccg cgcgggcgga aacgtgtcga gtaagaagtc ggaaggcgct 2161 ggcagggggt acttcactgt caaggcggaa tgcctcttga acggtaacgt tgtgacctac 2221 gttgagcctg cgccgccagc tgagcagggg cagtggtttt acacgcagtc atgtgatgca 2281 cagccttcat ataccggcac tggtccatgg ggcagcggtg gttcagcgaa gaatggcagc 2341 ctcggttgcc gcaatggctg tgacggcatc tggcaaacca acgcagatgc ctccaagacg 2401 tggacgccac ttggtaacac ttgcccagat gatgagaaga agacatgcga aacctacggc 2461 gacggctact actggaactc gttgctgaag gtttgtgagc cgcctgaggg gaaatgccag 2521 ggcggtggcc gtccaaattc gttgggtcaa tgcgctcccg agccgtgccc cgagggcatg 2581 gcgcagcaag ccgatggaac gtgcaagaag aaggataacg agtgccctgc gggtcaggtc 2641 cgttcacctg atggtaagtg ccttcccggc gacggccagt gtgcaaaggg tgaggtgcgc 2701 ggccaggacg ggacctgcaa gaaggacgcc gacaacgacg gcaatcccga tccagtgaat 2761 gaggattcat tcagtggggg cgacgactgt agcgcgccac catcgtgcag tggctcgccg 2821 atcatgtgcg gtcaggcgcg cattcaatgg cgcatcgatt gcaacacgcg caagaaccgc 2881 aacatcgccg ggggtacttg tgcgtccatg ccgatctgta cgggcgagaa gtgcgacgcg 2941 atggagtatt ccgcgctgtt gatgcagtgg cggtcagcct gcgcgttgga aaagatggcg 3001 cagggtaacg gcaatggtgg tggtgataac ggagacacca aggcgattcg tgacgcactc 3061 accggcactg gtggggcagt cacaacggcg ccggatcggc ctagctccga cgtatgggcg 3121 ccgcgcagcg gcacgccggt caagcctgat acgggcggat acggctgggg gcgtacgtgc 3181 ccgcagccgc ccagcttcga agtgttcgga aatgtcatcc agatcaacac agcaccgctc 3241 tgcaactggc tgattctcgg gggctacttc gtgatggggc tcgccgcgct ggcctcgctt 3301 cgcatcatcg catctaggga cgcttgatca tgccaatgct catcagcaca ttgctgaccg 3361 cgcttgcagc gctgttccgt tccaagtggg gcccatgggt cgctgaagcc atggtgtggc 3421 tgggcttgtc ctgggcaacc aacgaattct tggtgcagcc atggattgat cagatggaac 3481 aggcgatgcg cgcaggtacg cccggcggcg agttcggcgc gctggtcatt gcttacgcgg 3541 gactcatgaa gttcgacgtg gcctgcacca tgattgcctc ggcggtgacc gcgaagttcg 3601 ccgtgggggc tgcaaaaacg ttcctgacga agcgggcctg acatgcctat cgaactcttc 3661 accggtcagc cgggcaatgg caaaacggcg ctgatgatgg aacggcttgt cgctgaggcg 3721 aaggccgcaa gtcgtccaat ttttgcggcg ggcatcgatg gccttgaccc gggccttgcg 3781 actgttctgg acgatccgcg ccactggaac aacaaggatg cggacgggaa ttacattgtt 3841 cctgatggct cgctcatctt cgtggatgaa gcgtggaagt ggttcggcca cctgcatgac 3901 gccactcgcc aacagacgcc gcgtcacgtg ctcgaactgg ctgagcatcg acatcgcggc 3961 ctggacttcg tatggacgac tcagcagccg aaccagctgt atccattcgt gcgcggtctg 4021 atcggatcgc atgcgcatgt ggttcgccgc ttcggcacaa agatgctcga tgtctatcgc 4081 tggggtgagt tgaacgaaga aatcaagtcg ctggcgaagc gcgacatggc gcagcgcacg 4141 acccggttgc tgccctcgca ggtcttcggt caatacaagt ccgctgaggt acacacgatc 4201 aaggcccgca ttcccttcaa ggtgatgctg ttgccggtgc tggcgattgc tgccatcgtt 4261 ttcgcctatc tggcatacac gtcgcttcgt ccctcaagct tcgccggtgg cgaggggaaa 4321 gaggggacgc aatcggcgtc agccgatgcg gccccttcgc ccttccgacc agcgggagcc 4381 aaggaagatg cgccgcgttg gccgactgcc gctgcatatg ccaaggatca cctgccgcgc 4441 atcagcacca tgccctggac agcgccggtc tttgatgagc ggcaggcacg ttcggatccg 4501 cagttggtgt gtatgtcgtc gctggaaggg ctggatgcgc agggcgttcg acaggaggcc 4561 agctgcaggt gtctgacgga gcagggcacc gcatatgagt tgagccagcc agaatgccgc 4621 acgctggctc gaaacgggcc ggtctataac ccgtaccgcg agcgctcaga ggaacgcagt 4681 acccagcgga ttgaggacct tgaacgatct cggccgggcg tagcaaccac gagtgccgga 4741 ggtgttgctc agcacgttga acgttcgatg ggcacgtttc cagagtcgcc gtcctatcga 4801 tctgattcct acatgaccac ggcgccgggg ccgaacaagc tgtgaccagt agcgcgcgcg 4861 aactgttgaa gtggctggcc gtcatcctta tgactgggga tcacgtcgcc aaggtgatat 4921 acggcgggta cgtgcctgga ctcagcgaag cggggcgggt ggccttcccg cttttcgcac 4981 tggtgatggc ctacaacctc gcgcagcccg gtgctgatgt aggcaagtcc gtgcggaggc 5041 tcgccctgtg gggcgccatc gcacagccgg tccacgcgct ggcgttcggc tactggttgc 5101 cgctgaacat cctgctcacc ttcggcgtgt gtgctgcggc ggtctacgcg gcctgccagc 5161 gtaactggat cgtcctggcg ttcgccgcgg tggtgctgcc ggcgttcgtg gactaccagt 5221 gggccggggt ggctttcgtg ctgctggcat ggctgggatt ccgcacagga cgtttgttac 5281 tgactttggt cgcgttcgcg cctctgtgtg ccttcaacgg caacctgtgg gcgctggtag 5341 ccattcccgc ggccttgggg ctatcgcaca cggcgtggtc cgtcccgcgc ggtcggtgga 5401 ccttctacgg ttattacgtc gcccaccttg cgtgcctagg gctgttggcg cctatactgc 5461 ggccatgagc ctgcgccgat acctcgacat tcactattgg gtcgctcgat ggatggaccg 5521 ggcgttcgcg cgagagcgag gccgtaaggc gtagctcatc aagggcaggg tgcgccgggt 5581 acgttctccc agccgcctgg gatccggcga aatgcgattc cattgatgca tcggagctca 5641 tctgtgtgcg ctggcgtgtc cgaacggcca gctcgggcgc gtttggcggc aatctctgca 5701 agctctctac gcgcacggat ttcagcgatc atcacctgac ggctggcatc agtatctgcc 5761 tgtgatggct cgatcggtgc ggctgcgtcg gatgtttctg cggccgccat gaatcgcgta 5821 ttccaggcgt ctccggtctt caggtgtagc cagatgccag caccagcccc gcccagtagc 5881 aggacggccc acattccgag ccatgggaac tcccatcggc ggcgtgggat cggttgaagg 5941 tactccggtc gttcgcgttc catacggccc ccaatgcgtc ctgcgcgcat tgtagccggg 6001 gtgtaggggc agcgccccta cggaagcgcc tcacacgcgc tggcggcgtt tcggccccgg 6061 taccggcagg actgctgcag gcggctcggc gtcgggtcca gccatcgccc cgggtgaccg 6121 ctttttccgg cgctgtgcca aggcatcgga gaggttcacc acgctagcgg cgttgaagga 6181 caagggattc cggggcttgt cgatcgcgcg gctgctctcc atcatccgac gccattcctg 6241 cgcttgcgca gcggtgagcg acagccaggc cagatcctgc ggttccaact cgcggccctc 6301 gggtgtgacc agtcggccac ccttaaacga aaaaccggcc caagggccgg tcagtttccg 6361 atcacgcacg atcaggctcc atgccagagt aggtgccggg gcagcggcaa gagacgtgcc 6421 agccacccca agatgatccg aacataatat acagaatgcg gctgatcgga gccggaagag 6481 ccttgtgaat caatggcttt agcgcgtgct gcgcctggtg ctgcgaacac taccagcatc 6541 agcactgccg ccgccgcgct taacctgtcc agcactgagc gccagaccct acgctgagcg 6601 ggggtctcgg cctgttcctc catcactcgc acgacgatct cgccatccag accagcgatg 6661 gcggccagcg cagttgcgtg catttccgtg atcactccgc ccttgcgcca cttcgatacg 6721 gcgcttgcgg tcacgcgcaa tttctccgcc aaagctctgt ccgacgggcg ttcgcacttc 6781 tcgcgggcct tgtctagcag taggtcgatg cttcgcatgt ggagtaccag ttgacacggg 6841 gatcaattgt gagtttatat cgccccgcgt cagctggtag ttgatgcccc gccaccggca 6901 ccccaaggtc gctggcgggt tcccttgggg gcttggggta ggggaagagg gatgatcgat 6961 ccgttcattg ccttcgtgct gctggcggcc atcgtggccg tatccattgg cagcgccaaa 7021 ctcgtttcgt ggtgcctcga ccggcgcggg gagtctgccc gtcgcagtgc acgcgaagcg 7081 gccatcgtcg ccgaggcatg cgccgaactg gccgccaccg gctggactgc tgaagacgaa 7141 gcctcgttcc aagccattcg gggccagcag ctcgtcttcc tgaagcatct acaggaggtg 7201 cgtcatggtt aaggtccttc tcttcagcgc agtgctgttc ggtgctgtcg ccatactcaa 7261 ggatgagctg tatttcgccg tggtttcagc tctcttgggc ttgctcgcgt acggattcca 7321 ggctgcggag gatcgctcca atggccgttg atcagttccg cgagttcctc cgcgatccgt 7381 tcgttgtctc cgtgctgggc ggcgtcctgc ttaccggcct ctattggtcg ctggtgctcg 7441 cgctgcgtgc gaagggggcg ggcaatggcc gctgagtgct tggtcatcac caaggcggat 7501 tgggatcagc tgatgcagct gttcgccgga atgttcctgc tgctcgcctt ctgcgccgtg 7561 ttctcgccgt tcgatctgca ttcgtgggag taccgcgtgc gccgctatct gcgtcgccgt 7621 cgcattgcgc gcattcggga gtccgttc //