locus-tag class description JDY60_00060 PF01473 Putative cell wall binding repeat JDY60_00060 PF01510 N-acetylmuramoyl-L-alanine amidase JDY60_00080 PF00005 ABC transporter JDY60_00080 PF00664 ABC transporter transmembrane region JDY60_00085 PF00005 ABC transporter JDY60_00085 PF00664 ABC transporter transmembrane region JDY60_00105 PF00830 Ribosomal L28 family JDY60_00110 PF03780 Asp23 family, cell envelope-related function JDY60_00115 PF02734 DAK2 domain JDY60_00115 PF13684 Dihydroxyacetone kinase family JDY60_00135 PF00005 ABC transporter JDY60_00145 PF07730 Histidine kinase JDY60_00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_00150 PF00072 Response regulator receiver domain JDY60_00150 PF00196 Bacterial regulatory proteins, luxR family JDY60_00155 PF00164 Ribosomal protein S12/S23 JDY60_00160 PF00177 Ribosomal protein S7p/S5e JDY60_00165 PF14492 Elongation Factor G, domain II JDY60_00165 PF03144 Elongation factor Tu domain 2 JDY60_00165 PF03764 Elongation factor G, domain IV JDY60_00165 PF00679 Elongation factor G C-terminus JDY60_00165 PF00009 Elongation factor Tu GTP binding domain JDY60_00170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDY60_00170 PF00205 Thiamine pyrophosphate enzyme, central domain JDY60_00170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDY60_00175 PF10369 Small subunit of acetolactate synthase JDY60_00175 PF01842 ACT domain JDY60_00180 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JDY60_00180 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JDY60_00185 PF00585 C-terminal regulatory domain of Threonine dehydratase JDY60_00185 PF00291 Pyridoxal-phosphate dependent enzyme JDY60_00200 PF00005 ABC transporter JDY60_00205 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_00215 PF02673 Bacitracin resistance protein BacA JDY60_00220 PF00440 Bacterial regulatory proteins, tetR family JDY60_00230 PF00817 impB/mucB/samB family JDY60_00230 PF11798 IMS family HHH motif JDY60_00230 PF11799 impB/mucB/samB family C-terminal domain JDY60_00235 PF02901 Pyruvate formate lyase-like JDY60_00235 PF01228 Glycine radical JDY60_00245 PF07724 AAA domain (Cdc48 subfamily) JDY60_00245 PF00004 ATPase family associated with various cellular activities (AAA) JDY60_00245 PF17871 AAA lid domain JDY60_00245 PF10431 C-terminal, D2-small domain, of ClpB protein JDY60_00250 PF02664 S-Ribosylhomocysteinase (LuxS) JDY60_00255 PF08903 Domain of unknown function (DUF1846) JDY60_00260 PF00128 Alpha amylase, catalytic domain JDY60_00260 PF16657 Maltogenic Amylase, C-terminal domain JDY60_00265 PF12905 Endo-alpha-N-acetylgalactosaminidase JDY60_00265 PF00754 F5/8 type C domain JDY60_00265 PF18080 Galactose mutarotase-like fold domain JDY60_00265 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal JDY60_00265 PF17451 Glycosyl hydrolase 101 beta sandwich domain JDY60_00265 PF04650 YSIRK type signal peptide JDY60_00265 PF17974 Galactose-binding domain-like JDY60_00270 PF00255 Glutathione peroxidase JDY60_00290 PF01795 MraW methylase family JDY60_00300 PF03793 PASTA domain JDY60_00300 PF03717 Penicillin-binding Protein dimerisation domain JDY60_00300 PF00905 Penicillin binding protein transpeptidase domain JDY60_00305 PF00953 Glycosyl transferase family 4 JDY60_00305 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JDY60_00310 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal JDY60_00310 PF17974 Galactose-binding domain-like JDY60_00310 PF18080 Galactose mutarotase-like fold domain JDY60_00310 PF00754 F5/8 type C domain JDY60_00310 PF12905 Endo-alpha-N-acetylgalactosaminidase JDY60_00310 PF04650 YSIRK type signal peptide JDY60_00310 PF17451 Glycosyl hydrolase 101 beta sandwich domain JDY60_00315 PF03672 Uncharacterised protein family (UPF0154) JDY60_00320 PF01177 Asp/Glu/Hydantoin racemase JDY60_00325 PF01725 Ham1 family JDY60_00340 PF00589 Phage integrase family JDY60_00340 PF02899 Phage integrase, N-terminal SAM-like domain JDY60_00345 PF02616 Segregation and condensation protein ScpA JDY60_00350 PF04079 Segregation and condensation complex subunit ScpB JDY60_00355 PF00849 RNA pseudouridylate synthase JDY60_00355 PF01479 S4 domain JDY60_00360 PF01809 Putative membrane protein insertion efficiency factor JDY60_00365 PF01497 Periplasmic binding protein JDY60_00370 PF00005 ABC transporter JDY60_00375 PF01032 FecCD transport family JDY60_00380 PF01032 FecCD transport family JDY60_00385 PF05343 M42 glutamyl aminopeptidase JDY60_00405 PF00162 Phosphoglycerate kinase JDY60_00410 PF16364 Cell surface antigen C-terminus JDY60_00410 PF06696 Streptococcal surface antigen repeat JDY60_00410 PF00746 LPXTG cell wall anchor motif JDY60_00410 PF08363 Glucan-binding protein C JDY60_00410 PF18652 Adhesin P1 N-terminal domain JDY60_00410 PF17998 Cell surface antigen I/II C2 terminal domain JDY60_00415 PF06081 Aromatic acid exporter family member 1 JDY60_00420 PF13411 MerR HTH family regulatory protein JDY60_00425 PF03951 Glutamine synthetase, beta-Grasp domain JDY60_00425 PF00120 Glutamine synthetase, catalytic domain JDY60_00465 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding JDY60_00465 PF01628 HrcA protein C terminal domain JDY60_00470 PF01025 GrpE JDY60_00475 PF00012 Hsp70 protein JDY60_00480 PF00684 DnaJ central domain JDY60_00480 PF01556 DnaJ C terminal domain JDY60_00480 PF00226 DnaJ domain JDY60_00490 PF01230 HIT domain JDY60_00495 PF00005 ABC transporter JDY60_00510 PF02390 Putative methyltransferase JDY60_00515 PF17384 RimP C-terminal SH3 domain JDY60_00515 PF02576 RimP N-terminal domain JDY60_00520 PF00575 S1 RNA binding domain JDY60_00520 PF08529 NusA N-terminal domain JDY60_00520 PF13184 NusA-like KH domain JDY60_00525 PF04296 Protein of unknown function (DUF448) JDY60_00530 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JDY60_00535 PF04760 Translation initiation factor IF-2, N-terminal region JDY60_00535 PF00009 Elongation factor Tu GTP binding domain JDY60_00535 PF11987 Translation-initiation factor 2 JDY60_00540 PF02033 Ribosome-binding factor A JDY60_00575 PF13302 Acetyltransferase (GNAT) domain JDY60_00585 PF08264 Anticodon-binding domain of tRNA JDY60_00585 PF10458 Valyl tRNA synthetase tRNA binding arm JDY60_00585 PF00133 tRNA synthetases class I (I, L, M and V) JDY60_00595 PF05066 HB1, ASXL, restriction endonuclease HTH domain JDY60_00600 PF06418 CTP synthase N-terminus JDY60_00600 PF00117 Glutamine amidotransferase class-I JDY60_00610 PF00085 Thioredoxin JDY60_00615 PF01588 Putative tRNA binding domain JDY60_00615 PF14794 Domain of unknown function (DUF4479) JDY60_00620 PF00106 short chain dehydrogenase JDY60_00625 PF00436 Single-strand binding protein family JDY60_00630 PF00166 Chaperonin 10 Kd subunit JDY60_00635 PF00118 TCP-1/cpn60 chaperonin family JDY60_00640 PF02677 Epoxyqueuosine reductase QueH JDY60_00645 PF04167 Protein of unknown function (DUF402) JDY60_00650 PF02631 RecX family JDY60_00655 PF01938 TRAM domain JDY60_00655 PF05958 tRNA (Uracil-5-)-methyltransferase JDY60_00770 PF02237 Biotin protein ligase C terminal domain JDY60_00770 PF03099 Biotin/lipoate A/B protein ligase family JDY60_00770 PF08279 HTH domain JDY60_00775 PF02311 AraC-like ligand binding domain JDY60_00775 PF12833 Helix-turn-helix domain JDY60_00780 PF16874 Glycosyl hydrolase family 36 C-terminal domain JDY60_00780 PF16875 Glycosyl hydrolase family 36 N-terminal domain JDY60_00785 PF01547 Bacterial extracellular solute-binding protein JDY60_00790 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_00795 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_00800 PF00128 Alpha amylase, catalytic domain JDY60_00820 PF00571 CBS domain JDY60_00820 PF00005 ABC transporter JDY60_00825 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_00835 PF02361 Cobalt transport protein JDY60_00840 PF00005 ABC transporter JDY60_00845 PF00005 ABC transporter JDY60_00885 PF00440 Bacterial regulatory proteins, tetR family JDY60_00890 PF01545 Cation efflux family JDY60_00895 PF00356 Bacterial regulatory proteins, lacI family JDY60_00900 PF08544 GHMP kinases C terminal JDY60_00900 PF00288 GHMP kinases N terminal domain JDY60_00900 PF10509 Galactokinase galactose-binding signature JDY60_00905 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JDY60_00905 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JDY60_00915 PF00860 Permease family JDY60_00920 PF00156 Phosphoribosyl transferase domain JDY60_00930 PF03372 Endonuclease/Exonuclease/phosphatase family JDY60_00945 PF00005 ABC transporter JDY60_00945 PF00664 ABC transporter transmembrane region JDY60_00950 PF00005 ABC transporter JDY60_00950 PF00664 ABC transporter transmembrane region JDY60_00955 PF02397 Bacterial sugar transferase JDY60_00960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JDY60_00965 PF00291 Pyridoxal-phosphate dependent enzyme JDY60_00970 PF00425 chorismate binding enzyme JDY60_00970 PF04715 Anthranilate synthase component I, N terminal region JDY60_00975 PF00117 Glutamine amidotransferase class-I JDY60_00980 PF02885 Glycosyl transferase family, helical bundle domain JDY60_00980 PF00591 Glycosyl transferase family, a/b domain JDY60_00985 PF00218 Indole-3-glycerol phosphate synthase JDY60_00990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JDY60_00995 PF00291 Pyridoxal-phosphate dependent enzyme JDY60_01000 PF00290 Tryptophan synthase alpha chain JDY60_01015 PF06750 Bacterial Peptidase A24 N-terminal domain JDY60_01015 PF01478 Type IV leader peptidase family JDY60_01035 PF05532 CsbD-like JDY60_01040 PF03780 Asp23 family, cell envelope-related function JDY60_01055 PF04226 Transglycosylase associated protein JDY60_01075 PF01594 AI-2E family transporter JDY60_01095 PF12002 MgsA AAA+ ATPase C terminal JDY60_01095 PF16193 AAA C-terminal domain JDY60_01095 PF05496 Holliday junction DNA helicase RuvB P-loop domain JDY60_01105 PF00293 NUDIX domain JDY60_01120 PF04452 RNA methyltransferase JDY60_01125 PF01432 Peptidase family M3 JDY60_01125 PF08439 Oligopeptidase F JDY60_01165 PF00230 Major intrinsic protein JDY60_01170 PF14489 QueF-like protein JDY60_01175 PF04055 Radical SAM superfamily JDY60_01180 PF01242 6-pyruvoyl tetrahydropterin synthase JDY60_01185 PF06508 Queuosine biosynthesis protein QueC JDY60_01190 PF00085 Thioredoxin JDY60_01205 PF03788 LrgA family JDY60_01210 PF04172 LrgB-like family JDY60_01220 PF01381 Helix-turn-helix JDY60_01235 PF00005 ABC transporter JDY60_01240 PF00392 Bacterial regulatory proteins, gntR family JDY60_01245 PF03477 ATP cone domain JDY60_01255 PF07319 Primosomal protein DnaI N-terminus JDY60_01255 PF01695 IstB-like ATP binding protein JDY60_01260 PF00881 Nitroreductase family JDY60_01265 PF01926 50S ribosome-binding GTPase JDY60_01265 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JDY60_01290 PF01043 SecA preprotein cross-linking domain JDY60_01290 PF07516 SecA Wing and Scaffold domain JDY60_01290 PF02810 SEC-C motif JDY60_01290 PF07517 SecA DEAD-like domain JDY60_01295 PF00793 DAHP synthetase I family JDY60_01300 PF00793 DAHP synthetase I family JDY60_01305 PF01648 4'-phosphopantetheinyl transferase superfamily JDY60_01310 PF01168 Alanine racemase, N-terminal domain JDY60_01310 PF00842 Alanine racemase, C-terminal domain JDY60_01315 PF17191 RecG wedge domain JDY60_01315 PF00271 Helicase conserved C-terminal domain JDY60_01315 PF00270 DEAD/DEAH box helicase JDY60_01320 PF05448 Acetyl xylan esterase (AXE1) JDY60_01325 PF02973 Sialidase, N-terminal domain JDY60_01325 PF04650 YSIRK type signal peptide JDY60_01325 PF13088 BNR repeat-like domain JDY60_01330 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JDY60_01340 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_01345 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_01350 PF04074 YhcH/YjgK/YiaL JDY60_01360 PF00701 Dihydrodipicolinate synthetase family JDY60_01365 PF00480 ROK family JDY60_01370 PF08241 Methyltransferase domain JDY60_01380 PF03717 Penicillin-binding Protein dimerisation domain JDY60_01380 PF00905 Penicillin binding protein transpeptidase domain JDY60_01385 PF13662 Toprim domain JDY60_01385 PF02132 RecR protein JDY60_01390 PF07478 D-ala D-ala ligase C-terminus JDY60_01390 PF01820 D-ala D-ala ligase N-terminus JDY60_01395 PF08245 Mur ligase middle domain JDY60_01395 PF01225 Mur ligase family, catalytic domain JDY60_01395 PF02875 Mur ligase family, glutamate ligase domain JDY60_01400 PF00293 NUDIX domain JDY60_01410 PF11983 Membrane-attachment and polymerisation-promoting switch JDY60_01410 PF02491 SHS2 domain inserted in FTSA JDY60_01415 PF00091 Tubulin/FtsZ family, GTPase domain JDY60_01415 PF12327 FtsZ family, C-terminal domain JDY60_01420 PF01168 Alanine racemase, N-terminal domain JDY60_01425 PF04472 Cell division protein SepF JDY60_01440 PF05103 DivIVA protein JDY60_01445 PF05103 DivIVA protein JDY60_01450 PF08264 Anticodon-binding domain of tRNA JDY60_01450 PF00133 tRNA synthetases class I (I, L, M and V) JDY60_01450 PF06827 Zinc finger found in FPG and IleRS JDY60_01455 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region JDY60_01455 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region JDY60_01455 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region JDY60_01455 PF07501 G5 domain JDY60_01455 PF07501 G5 domain JDY60_01455 PF04650 YSIRK type signal peptide JDY60_01455 PF04650 YSIRK type signal peptide JDY60_01455 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region JDY60_01460 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region JDY60_01460 PF04650 YSIRK type signal peptide JDY60_01460 PF07501 G5 domain JDY60_01460 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region JDY60_01470 PF00746 LPXTG cell wall anchor motif JDY60_01470 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region JDY60_01470 PF07501 G5 domain JDY60_01470 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region JDY60_01470 PF04650 YSIRK type signal peptide JDY60_01470 PF07581 The GLUG motif JDY60_01480 PF00300 Histidine phosphatase superfamily (branch 1) JDY60_01485 PF00312 Ribosomal protein S15 JDY60_01495 PF01032 FecCD transport family JDY60_01500 PF00005 ABC transporter JDY60_01515 PF01553 Acyltransferase JDY60_01525 PF04816 tRNA (adenine(22)-N(1))-methyltransferase JDY60_01530 PF01784 NIF3 (NGG1p interacting factor 3) JDY60_01535 PF01266 FAD dependent oxidoreductase JDY60_01540 PF16363 GDP-mannose 4,6 dehydratase JDY60_01545 PF00535 Glycosyl transferase family 2 JDY60_01560 PF02224 Cytidylate kinase JDY60_01565 PF00186 Dihydrofolate reductase JDY60_01575 PF07724 AAA domain (Cdc48 subfamily) JDY60_01575 PF06689 ClpX C4-type zinc finger JDY60_01575 PF10431 C-terminal, D2-small domain, of ClpB protein JDY60_01580 PF01926 50S ribosome-binding GTPase JDY60_01585 PF01042 Endoribonuclease L-PSP JDY60_01590 PF03668 P-loop ATPase protein family JDY60_01595 PF01933 Uncharacterised protein family UPF0052 JDY60_01600 PF14527 WhiA LAGLIDADG-like domain JDY60_01600 PF10298 WhiA N-terminal LAGLIDADG-like domain JDY60_01600 PF02650 WhiA C-terminal HTH domain JDY60_01605 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDY60_01610 PF02457 DisA bacterial checkpoint controller nucleotide-binding JDY60_01620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDY60_01620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDY60_01620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDY60_01620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDY60_01630 PF02645 Uncharacterised protein, DegV family COG1307 JDY60_01635 PF05173 Dihydrodipicolinate reductase, C-terminus JDY60_01635 PF01113 Dihydrodipicolinate reductase, N-terminus JDY60_01640 PF13735 tRNA nucleotidyltransferase domain 2 putative JDY60_01640 PF12627 Probable RNA and SrmB- binding site of polymerase A JDY60_01640 PF01743 Poly A polymerase head domain JDY60_01645 PF16326 ABC transporter C-terminal domain JDY60_01645 PF12848 ABC transporter JDY60_01645 PF00005 ABC transporter JDY60_01655 PF16916 Dimerisation domain of Zinc Transporter JDY60_01655 PF01545 Cation efflux family JDY60_01660 PF00690 Cation transporter/ATPase, N-terminus JDY60_01660 PF00689 Cation transporting ATPase, C-terminus JDY60_01665 PF01327 Polypeptide deformylase JDY60_01680 PF03883 Peroxide stress protein YaaA JDY60_01685 PF03358 NADPH-dependent FMN reductase JDY60_01690 PF01047 MarR family JDY60_01700 PF00155 Aminotransferase class I and II JDY60_01705 PF01336 OB-fold nucleic acid binding domain JDY60_01705 PF00152 tRNA synthetases class II (D, K and N) JDY60_01710 PF01250 Ribosomal protein S6 JDY60_01715 PF00436 Single-strand binding protein family JDY60_01720 PF01084 Ribosomal protein S18 JDY60_01730 PF02350 UDP-N-acetylglucosamine 2-epimerase JDY60_01745 PF01270 Glycosyl hydrolases family 8 JDY60_01750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JDY60_01755 PF00575 S1 RNA binding domain JDY60_01760 PF05175 Methyltransferase small domain JDY60_01765 PF01541 GIY-YIG catalytic domain JDY60_01770 PF01368 DHH family JDY60_01770 PF02833 DHHA2 domain JDY60_01790 PF05532 CsbD-like JDY60_01795 PF08245 Mur ligase middle domain JDY60_01795 PF02875 Mur ligase family, glutamate ligase domain JDY60_01800 PF14667 Polysaccharide biosynthesis C-terminal domain JDY60_01800 PF01943 Polysaccharide biosynthesis protein JDY60_01805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDY60_01810 PF01053 Cys/Met metabolism PLP-dependent enzyme JDY60_01815 PF00155 Aminotransferase class I and II JDY60_01820 PF12419 SNF2 Helicase protein JDY60_01820 PF00176 SNF2 family N-terminal domain JDY60_01820 PF00271 Helicase conserved C-terminal domain JDY60_01830 PF02875 Mur ligase family, glutamate ligase domain JDY60_01830 PF08245 Mur ligase middle domain JDY60_01830 PF01225 Mur ligase family, catalytic domain JDY60_01845 PF02618 YceG-like family JDY60_01850 PF03449 Transcription elongation factor, N-terminal JDY60_01850 PF01272 Transcription elongation factor, GreA/GreB, C-term JDY60_01855 PF00324 Amino acid permease JDY60_01865 PF01381 Helix-turn-helix JDY60_01875 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JDY60_01875 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JDY60_01875 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JDY60_01880 PF02540 NAD synthase JDY60_01885 PF13302 Acetyltransferase (GNAT) domain JDY60_01890 PF02683 Cytochrome C biogenesis protein transmembrane region JDY60_01895 PF08534 Redoxin JDY60_01900 PF01641 SelR domain JDY60_01900 PF01625 Peptide methionine sulfoxide reductase JDY60_01905 PF00072 Response regulator receiver domain JDY60_01905 PF12833 Helix-turn-helix domain JDY60_01910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_01910 PF02743 Cache domain JDY60_01910 PF00672 HAMP domain JDY60_01910 PF06580 Histidine kinase JDY60_01915 PF04260 Protein of unknown function (DUF436) JDY60_01925 PF04715 Anthranilate synthase component I, N terminal region JDY60_01925 PF00425 chorismate binding enzyme JDY60_01935 PF00480 ROK family JDY60_01940 PF00303 Thymidylate synthase JDY60_01955 PF13167 GTP-binding GTPase N-terminal JDY60_01955 PF01926 50S ribosome-binding GTPase JDY60_01955 PF16360 GTP-binding GTPase Middle Region JDY60_01960 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JDY60_01960 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JDY60_01965 PF00753 Metallo-beta-lactamase superfamily JDY60_01965 PF12706 Beta-lactamase superfamily domain JDY60_01970 PF00106 short chain dehydrogenase JDY60_01975 PF16355 Domain of unknown function (DUF4982) JDY60_01975 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JDY60_01975 PF00703 Glycosyl hydrolases family 2 JDY60_01975 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDY60_01975 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDY60_01985 PF17802 Prealbumin-like fold domain JDY60_01985 PF05738 Cna protein B-type domain JDY60_01985 PF05737 Collagen binding domain JDY60_01990 PF01209 ubiE/COQ5 methyltransferase family JDY60_02000 PF04055 Radical SAM superfamily JDY60_02000 PF16199 Radical_SAM C-terminal domain JDY60_02005 PF06962 Putative rRNA methylase JDY60_02015 PF00999 Sodium/hydrogen exchanger family JDY60_02025 PF02547 Queuosine biosynthesis protein JDY60_02030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JDY60_02040 PF01165 Ribosomal protein S21 JDY60_02050 PF02603 HPr Serine kinase N terminus JDY60_02050 PF07475 HPr Serine kinase C-terminal domain JDY60_02055 PF01790 Prolipoprotein diacylglyceryl transferase JDY60_02070 PF04055 Radical SAM superfamily JDY60_02070 PF06969 HemN C-terminal domain JDY60_02080 PF13344 Haloacid dehalogenase-like hydrolase JDY60_02090 PF03960 ArsC family JDY60_02095 PF05256 Uncharacterised protein family (UPF0223) JDY60_02100 PF00459 Inositol monophosphatase family JDY60_02105 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JDY60_02105 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF JDY60_02105 PF01189 16S rRNA methyltransferase RsmB/F JDY60_02110 PF12849 PBP superfamily domain JDY60_02115 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_02120 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_02125 PF00005 ABC transporter JDY60_02130 PF00005 ABC transporter JDY60_02135 PF01895 PhoU domain JDY60_02140 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_02145 PF00155 Aminotransferase class I and II JDY60_02145 PF00392 Bacterial regulatory proteins, gntR family JDY60_02150 PF03306 Alpha-acetolactate decarboxylase JDY60_02160 PF01565 FAD binding domain JDY60_02160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JDY60_02165 PF00005 ABC transporter JDY60_02165 PF08402 TOBE domain JDY60_02175 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_02180 PF13416 Bacterial extracellular solute-binding protein JDY60_02190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JDY60_02190 PF02272 DHHA1 domain JDY60_02190 PF01411 tRNA synthetases class II (A) JDY60_02195 PF09154 Domain of unknown function (DUF1939) JDY60_02195 PF00128 Alpha amylase, catalytic domain JDY60_02200 PF10672 S-adenosylmethionine-dependent methyltransferase JDY60_02200 PF17785 PUA-like domain JDY60_02205 PF01487 Type I 3-dehydroquinase JDY60_02210 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JDY60_02210 PF08501 Shikimate dehydrogenase substrate binding domain JDY60_02215 PF01761 3-dehydroquinate synthase JDY60_02220 PF01264 Chorismate synthase JDY60_02225 PF02153 Prephenate dehydrogenase JDY60_02230 PF06133 Control of competence regulator ComK, YlbF/YmcA JDY60_02235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDY60_02240 PF01202 Shikimate kinase JDY60_02245 PF00800 Prephenate dehydratase JDY60_02250 PF03816 Cell envelope-related transcriptional attenuator domain JDY60_02295 PF04991 LicD family JDY60_02300 PF00535 Glycosyl transferase family 2 JDY60_02300 PF01501 Glycosyl transferase family 8 JDY60_02305 PF04991 LicD family JDY60_02325 PF05389 Negative regulator of genetic competence (MecA) JDY60_02330 PF00742 Homoserine dehydrogenase JDY60_02330 PF03447 Homoserine dehydrogenase, NAD binding domain JDY60_02335 PF00288 GHMP kinases N terminal domain JDY60_02335 PF08544 GHMP kinases C terminal JDY60_02340 PF01641 SelR domain JDY60_02340 PF01625 Peptide methionine sulfoxide reductase JDY60_02345 PF00005 ABC transporter JDY60_02345 PF00664 ABC transporter transmembrane region JDY60_02350 PF00005 ABC transporter JDY60_02350 PF00664 ABC transporter transmembrane region JDY60_02355 PF01979 Amidohydrolase family JDY60_02360 PF00466 Ribosomal protein L10 JDY60_02365 PF00542 Ribosomal protein L7/L12 C-terminal domain JDY60_02365 PF16320 Ribosomal protein L7/L12 dimerisation domain JDY60_02370 PF10026 Predicted Zn-dependent protease (DUF2268) JDY60_02385 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JDY60_02385 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JDY60_02390 PF01180 Dihydroorotate dehydrogenase JDY60_02400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JDY60_02400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JDY60_02405 PF06265 Protein of unknown function (DUF1027) JDY60_02410 PF04055 Radical SAM superfamily JDY60_02420 PF12848 ABC transporter JDY60_02420 PF00005 ABC transporter JDY60_02430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JDY60_02435 PF00886 Ribosomal protein S16 JDY60_02455 PF01782 RimM N-terminal domain JDY60_02455 PF05239 PRC-barrel domain JDY60_02460 PF01746 tRNA (Guanine-1)-methyltransferase JDY60_02465 PF03477 ATP cone domain JDY60_02465 PF13597 Anaerobic ribonucleoside-triphosphate reductase JDY60_02475 PF02229 Transcriptional Coactivator p15 (PC4) JDY60_02485 PF02632 BioY family JDY60_02490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDY60_02490 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDY60_02495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JDY60_02500 PF00005 ABC transporter JDY60_02505 PF12704 MacB-like periplasmic core domain JDY60_02505 PF02687 FtsX-like permease family JDY60_02510 PF01588 Putative tRNA binding domain JDY60_02510 PF09334 tRNA synthetases class I (M) JDY60_02515 PF01202 Shikimate kinase JDY60_02520 PF01649 Ribosomal protein S20 JDY60_02525 PF00485 Phosphoribulokinase / Uridine kinase family JDY60_02535 PF05175 Methyltransferase small domain JDY60_02540 PF02885 Glycosyl transferase family, helical bundle domain JDY60_02540 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JDY60_02540 PF00591 Glycosyl transferase family, a/b domain JDY60_02545 PF01791 DeoC/LacD family aldolase JDY60_02550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JDY60_02555 PF02608 ABC transporter substrate-binding protein PnrA-like JDY60_02560 PF00005 ABC transporter JDY60_02565 PF02653 Branched-chain amino acid transport system / permease component JDY60_02570 PF02653 Branched-chain amino acid transport system / permease component JDY60_02575 PF02660 Glycerol-3-phosphate acyltransferase JDY60_02580 PF01751 Toprim domain JDY60_02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_02580 PF00986 DNA gyrase B subunit, carboxyl terminus JDY60_02580 PF00204 DNA gyrase B JDY60_02590 PF04439 Streptomycin adenylyltransferase JDY60_02595 PF03989 DNA gyrase C-terminal domain, beta-propeller JDY60_02595 PF00521 DNA gyrase/topoisomerase IV, subunit A JDY60_02600 PF01063 Amino-transferase class IV JDY60_02620 PF00575 S1 RNA binding domain JDY60_02625 PF13185 GAF domain JDY60_02630 PF12169 DNA polymerase III subunits gamma and tau domain III JDY60_02640 PF00005 ABC transporter JDY60_02645 PF01458 Uncharacterized protein family (UPF0051) JDY60_02650 PF00266 Aminotransferase class-V JDY60_02655 PF01592 NifU-like N terminal domain JDY60_02660 PF01458 Uncharacterized protein family (UPF0051) JDY60_02670 PF13520 Amino acid permease JDY60_02675 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JDY60_02675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JDY60_02680 PF02645 Uncharacterised protein, DegV family COG1307 JDY60_02685 PF00216 Bacterial DNA-binding protein JDY60_02690 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JDY60_02690 PF00056 lactate/malate dehydrogenase, NAD binding domain JDY60_02695 PF00521 DNA gyrase/topoisomerase IV, subunit A JDY60_02695 PF03989 DNA gyrase C-terminal domain, beta-propeller JDY60_02700 PF04203 Sortase domain JDY60_02720 PF16198 tRNA pseudouridylate synthase B C-terminal domain JDY60_02720 PF01509 TruB family pseudouridylate synthase (N terminal domain) JDY60_02725 PF00485 Phosphoribulokinase / Uridine kinase family JDY60_02730 PF13742 OB-fold nucleic acid binding domain JDY60_02730 PF02601 Exonuclease VII, large subunit JDY60_02735 PF02609 Exonuclease VII small subunit JDY60_02740 PF00348 Polyprenyl synthetase JDY60_02745 PF01728 FtsJ-like methyltransferase JDY60_02745 PF01479 S4 domain JDY60_02750 PF01316 Arginine repressor, DNA binding domain JDY60_02750 PF02863 Arginine repressor, C-terminal domain JDY60_02755 PF13476 AAA domain JDY60_02760 PF00149 Calcineurin-like phosphoesterase JDY60_02765 PF00679 Elongation factor G C-terminus JDY60_02765 PF00009 Elongation factor Tu GTP binding domain JDY60_02765 PF03144 Elongation factor Tu domain 2 JDY60_02765 PF06421 GTP-binding protein LepA C-terminus JDY60_02775 PF18255 DNA processing protein A sterile alpha motif domain JDY60_02775 PF02481 DNA recombination-mediator protein A JDY60_02780 PF01131 DNA topoisomerase JDY60_02780 PF01396 Topoisomerase DNA binding C4 zinc finger JDY60_02780 PF01751 Toprim domain JDY60_02785 PF04304 Protein of unknown function (DUF454) JDY60_02790 PF03932 CutC family JDY60_02800 PF00682 HMGL-like JDY60_02800 PF08502 LeuA allosteric (dimerisation) domain JDY60_02805 PF00180 Isocitrate/isopropylmalate dehydrogenase JDY60_02815 PF00330 Aconitase family (aconitate hydratase) JDY60_02820 PF00694 Aconitase C-terminal domain JDY60_02830 PF07728 AAA domain (dynein-related subfamily) JDY60_02830 PF12102 Domain of unknown function (DUF3578) JDY60_02840 PF00478 IMP dehydrogenase / GMP reductase domain JDY60_02850 PF00035 Double-stranded RNA binding motif JDY60_02850 PF14622 Ribonuclease-III-like JDY60_02855 PF06470 SMC proteins Flexible Hinge Domain JDY60_02855 PF02463 RecF/RecN/SMC N terminal domain JDY60_02860 PF06574 FAD synthetase JDY60_02860 PF01687 Riboflavin kinase JDY60_02865 PF02384 N-6 DNA Methylase JDY60_02885 PF00589 Phage integrase family JDY60_02885 PF02899 Phage integrase, N-terminal SAM-like domain JDY60_02895 PF04851 Type III restriction enzyme, res subunit JDY60_02895 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JDY60_02895 PF00271 Helicase conserved C-terminal domain JDY60_02895 PF08463 EcoEI R protein C-terminal JDY60_02900 PF10127 RNA repair pathway DNA polymerase beta family JDY60_02915 PF09323 Domain of unknown function (DUF1980) JDY60_02920 PF03773 Predicted permease JDY60_02925 PF09371 Tex-like protein N-terminal domain JDY60_02925 PF17674 HHH domain JDY60_02925 PF16921 Tex protein YqgF-like domain JDY60_02925 PF00575 S1 RNA binding domain JDY60_02930 PF17283 SprT-like zinc ribbon domain JDY60_02930 PF10263 SprT-like family JDY60_02940 PF00005 ABC transporter JDY60_02945 PF02687 FtsX-like permease family JDY60_02965 PF02881 SRP54-type protein, helical bundle domain JDY60_02965 PF00448 SRP54-type protein, GTPase domain JDY60_02970 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JDY60_02970 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JDY60_02975 PF00005 ABC transporter JDY60_02980 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_02985 PF17757 UvrB interaction domain JDY60_02985 PF12344 Ultra-violet resistance protein B JDY60_02985 PF02151 UvrB/uvrC motif JDY60_02985 PF04851 Type III restriction enzyme, res subunit JDY60_02985 PF00271 Helicase conserved C-terminal domain JDY60_02990 PF02525 Flavodoxin-like fold JDY60_03015 PF09297 NADH pyrophosphatase zinc ribbon domain JDY60_03015 PF00293 NUDIX domain JDY60_03020 PF02829 3H domain JDY60_03020 PF08279 HTH domain JDY60_03035 PF12822 ECF transporter, substrate-specific component JDY60_03040 PF02441 Flavoprotein JDY60_03045 PF02441 Flavoprotein JDY60_03045 PF04127 DNA / pantothenate metabolism flavoprotein JDY60_03060 PF01268 Formate--tetrahydrofolate ligase JDY60_03065 PF00580 UvrD/REP helicase N-terminal domain JDY60_03065 PF13361 UvrD-like helicase C-terminal domain JDY60_03070 PF04002 RadC-like JAB domain JDY60_03075 PF07722 Peptidase C26 JDY60_03080 PF02629 CoA binding domain JDY60_03080 PF06971 Putative DNA-binding protein N-terminus JDY60_03095 PF00266 Aminotransferase class-V JDY60_03100 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JDY60_03100 PF14572 Phosphoribosyl synthetase-associated domain JDY60_03110 PF04607 Region found in RelA / SpoT proteins JDY60_03115 PF01513 ATP-NAD kinase JDY60_03120 PF00849 RNA pseudouridylate synthase JDY60_03125 PF01515 Phosphate acetyl/butaryl transferase JDY60_03130 PF14815 NUDIX domain JDY60_03130 PF00730 HhH-GPD superfamily base excision DNA repair protein JDY60_03135 PF00486 Transcriptional regulatory protein, C terminal JDY60_03135 PF00072 Response regulator receiver domain JDY60_03140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_03140 PF13426 PAS domain JDY60_03140 PF00672 HAMP domain JDY60_03140 PF00512 His Kinase A (phospho-acceptor) domain JDY60_03145 PF00753 Metallo-beta-lactamase superfamily JDY60_03150 PF02463 RecF/RecN/SMC N terminal domain JDY60_03170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JDY60_03170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JDY60_03170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JDY60_03170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JDY60_03180 PF16326 ABC transporter C-terminal domain JDY60_03180 PF12848 ABC transporter JDY60_03180 PF00005 ABC transporter JDY60_03190 PF00083 Sugar (and other) transporter JDY60_03195 PF12826 Helix-hairpin-helix motif JDY60_03195 PF00533 BRCA1 C Terminus (BRCT) domain JDY60_03195 PF01653 NAD-dependent DNA ligase adenylation domain JDY60_03195 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JDY60_03195 PF03120 NAD-dependent DNA ligase OB-fold domain JDY60_03200 PF17999 Pullulanase N1-terminal domain JDY60_03200 PF00128 Alpha amylase, catalytic domain JDY60_03200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDY60_03205 PF00171 Aldehyde dehydrogenase family JDY60_03210 PF00128 Alpha amylase, catalytic domain JDY60_03210 PF02806 Alpha amylase, C-terminal all-beta domain JDY60_03210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDY60_03215 PF00483 Nucleotidyl transferase JDY60_03220 PF00483 Nucleotidyl transferase JDY60_03225 PF00534 Glycosyl transferases group 1 JDY60_03225 PF08323 Starch synthase catalytic domain JDY60_03235 PF02595 Glycerate kinase family JDY60_03245 PF03952 Enolase, N-terminal domain JDY60_03245 PF00113 Enolase, C-terminal TIM barrel domain JDY60_03255 PF12833 Helix-turn-helix domain JDY60_03255 PF06445 GyrI-like small molecule binding domain JDY60_03290 PF13419 Haloacid dehalogenase-like hydrolase JDY60_03300 PF03167 Uracil DNA glycosylase superfamily JDY60_03305 PF00293 NUDIX domain JDY60_03310 PF01979 Amidohydrolase family JDY60_03315 PF01554 MatE JDY60_03320 PF00676 Dehydrogenase E1 component JDY60_03325 PF02780 Transketolase, C-terminal domain JDY60_03325 PF02779 Transketolase, pyrimidine binding domain JDY60_03330 PF00364 Biotin-requiring enzyme JDY60_03330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JDY60_03330 PF02817 e3 binding domain JDY60_03335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDY60_03335 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDY60_03340 PF10437 Bacterial lipoate protein ligase C-terminus JDY60_03340 PF03099 Biotin/lipoate A/B protein ligase family JDY60_03350 PF00589 Phage integrase family JDY60_03405 PF00654 Voltage gated chloride channel JDY60_03410 PF01351 Ribonuclease HII JDY60_03415 PF01926 50S ribosome-binding GTPase JDY60_03435 PF12705 PD-(D/E)XK nuclease superfamily JDY60_03435 PF13361 UvrD-like helicase C-terminal domain JDY60_03435 PF00580 UvrD/REP helicase N-terminal domain JDY60_03440 PF12705 PD-(D/E)XK nuclease superfamily JDY60_03445 PF01878 EVE domain JDY60_03460 PF00005 ABC transporter JDY60_03470 PF00512 His Kinase A (phospho-acceptor) domain JDY60_03470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_03475 PF00486 Transcriptional regulatory protein, C terminal JDY60_03475 PF00072 Response regulator receiver domain JDY60_03485 PF00795 Carbon-nitrogen hydrolase JDY60_03490 PF04371 Porphyromonas-type peptidyl-arginine deiminase JDY60_03495 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JDY60_03500 PF16653 Saccharopine dehydrogenase C-terminal domain JDY60_03500 PF03435 Saccharopine dehydrogenase NADP binding domain JDY60_03505 PF17284 Spermidine synthase tetramerisation domain JDY60_03510 PF01276 Orn/Lys/Arg decarboxylase, major domain JDY60_03510 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JDY60_03535 PF00128 Alpha amylase, catalytic domain JDY60_03535 PF02903 Alpha amylase, N-terminal ig-like domain JDY60_03540 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JDY60_03545 PF00781 Diacylglycerol kinase catalytic domain JDY60_03730 PF01580 FtsK/SpoIIIE family JDY60_03735 PF10140 WXG100 protein secretion system (Wss), protein YukC JDY60_03755 PF06013 Proteins of 100 residues with WXG JDY60_03760 PF05958 tRNA (Uracil-5-)-methyltransferase JDY60_03780 PF00464 Serine hydroxymethyltransferase JDY60_03795 PF05175 Methyltransferase small domain JDY60_03800 PF03462 PCRF domain JDY60_03800 PF00472 RF-1 domain JDY60_03805 PF00265 Thymidine kinase JDY60_03810 PF01361 Tautomerase enzyme JDY60_03815 PF10396 GTP-binding protein TrmE N-terminus JDY60_03815 PF12631 MnmE helical domain JDY60_03815 PF01926 50S ribosome-binding GTPase JDY60_03820 PF00701 Dihydrodipicolinate synthetase family JDY60_03825 PF02774 Semialdehyde dehydrogenase, dimerisation domain JDY60_03825 PF01118 Semialdehyde dehydrogenase, NAD binding domain JDY60_03835 PF06177 QueT transporter JDY60_03840 PF04138 GtrA-like protein JDY60_03845 PF01741 Large-conductance mechanosensitive channel, MscL JDY60_03850 PF00762 Ferrochelatase JDY60_03860 PF04203 Sortase domain JDY60_03870 PF10502 Signal peptidase, peptidase S26 JDY60_03880 PF01546 Peptidase family M20/M25/M40 JDY60_03880 PF07687 Peptidase dimerisation domain JDY60_03890 PF01297 Zinc-uptake complex component A periplasmic JDY60_03890 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JDY60_03900 PF05524 PEP-utilising enzyme, N-terminal JDY60_03900 PF02896 PEP-utilising enzyme, TIM barrel domain JDY60_03900 PF00391 PEP-utilising enzyme, mobile domain JDY60_03905 PF00381 PTS HPr component phosphorylation site JDY60_03910 PF00462 Glutaredoxin JDY60_03915 PF02867 Ribonucleotide reductase, barrel domain JDY60_03915 PF00317 Ribonucleotide reductase, all-alpha domain JDY60_03915 PF08343 Ribonucleotide reductase N-terminal JDY60_03920 PF00268 Ribonucleotide reductase, small chain JDY60_03925 PF00455 DeoR C terminal sensor domain JDY60_03925 PF08220 DeoR-like helix-turn-helix domain JDY60_03930 PF00232 Glycosyl hydrolase family 1 JDY60_03935 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JDY60_03935 PF02378 Phosphotransferase system, EIIC JDY60_03940 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JDY60_03945 PF00874 PRD domain JDY60_03945 PF03123 CAT RNA binding domain JDY60_03950 PF01791 DeoC/LacD family aldolase JDY60_03955 PF00294 pfkB family carbohydrate kinase JDY60_03960 PF02502 Ribose/Galactose Isomerase JDY60_03965 PF02502 Ribose/Galactose Isomerase JDY60_03970 PF01263 Aldose 1-epimerase JDY60_03975 PF03611 PTS system sugar-specific permease component JDY60_03990 PF12804 MobA-like NTP transferase domain JDY60_04005 PF08240 Alcohol dehydrogenase GroES-like domain JDY60_04010 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JDY60_04015 PF02575 YbaB/EbfC DNA-binding family JDY60_04020 PF03009 Glycerophosphoryl diester phosphodiesterase family JDY60_04025 PF02811 PHP domain JDY60_04025 PF14579 Helix-hairpin-helix motif JDY60_04025 PF14480 DNA polymerase III polC-type N-terminus I JDY60_04025 PF11490 DNA polymerase III polC-type N-terminus II JDY60_04025 PF00929 Exonuclease JDY60_04025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDY60_04025 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDY60_04030 PF08279 HTH domain JDY60_04030 PF04394 Protein of unknown function, DUF536 JDY60_04035 PF01048 Phosphorylase superfamily JDY60_04045 PF00293 NUDIX domain JDY60_04050 PF14602 Hexapeptide repeat of succinyl-transferase JDY60_04050 PF00483 Nucleotidyl transferase JDY60_04050 PF00132 Bacterial transferase hexapeptide (six repeats) JDY60_04065 PF04073 Aminoacyl-tRNA editing domain JDY60_04075 PF00152 tRNA synthetases class II (D, K and N) JDY60_04075 PF01336 OB-fold nucleic acid binding domain JDY60_04080 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_04085 PF00005 ABC transporter JDY60_04090 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_04105 PF01594 AI-2E family transporter JDY60_04110 PF10282 Lactonase, 7-bladed beta-propeller JDY60_04115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JDY60_04115 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JDY60_04120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDY60_04120 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDY60_04125 PF00231 ATP synthase JDY60_04130 PF02874 ATP synthase alpha/beta family, beta-barrel domain JDY60_04130 PF00306 ATP synthase alpha/beta chain, C terminal domain JDY60_04130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JDY60_04135 PF00213 ATP synthase delta (OSCP) subunit JDY60_04140 PF00430 ATP synthase B/B' CF(0) JDY60_04145 PF00119 ATP synthase A chain JDY60_04150 PF00137 ATP synthase subunit C JDY60_04160 PF01136 Peptidase family U32 JDY60_04160 PF16325 Peptidase family U32 C-terminal domain JDY60_04165 PF07702 UTRA domain JDY60_04165 PF00392 Bacterial regulatory proteins, gntR family JDY60_04170 PF00117 Glutamine amidotransferase class-I JDY60_04170 PF00958 GMP synthase C terminal domain JDY60_04170 PF02540 NAD synthase JDY60_04175 PF02881 SRP54-type protein, helical bundle domain JDY60_04175 PF02978 Signal peptide binding domain JDY60_04175 PF00448 SRP54-type protein, GTPase domain JDY60_04180 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JDY60_04185 PF00009 Elongation factor Tu GTP binding domain JDY60_04185 PF03144 Elongation factor Tu domain 2 JDY60_04185 PF03143 Elongation factor Tu C-terminal domain JDY60_04190 PF01594 AI-2E family transporter JDY60_04195 PF00768 D-alanyl-D-alanine carboxypeptidase JDY60_04195 PF07943 Penicillin-binding protein 5, C-terminal domain JDY60_04200 PF00578 AhpC/TSA family JDY60_04205 PF02683 Cytochrome C biogenesis protein transmembrane region JDY60_04210 PF00557 Metallopeptidase family M24 JDY60_04215 PF03061 Thioesterase superfamily JDY60_04215 PF00392 Bacterial regulatory proteins, gntR family JDY60_04215 PF00571 CBS domain JDY60_04215 PF07085 DRTGG domain JDY60_04225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDY60_04230 PF02887 Pyruvate kinase, alpha/beta domain JDY60_04230 PF00224 Pyruvate kinase, barrel domain JDY60_04235 PF00365 Phosphofructokinase JDY60_04240 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDY60_04240 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDY60_04240 PF14579 Helix-hairpin-helix motif JDY60_04240 PF02811 PHP domain JDY60_04240 PF01336 OB-fold nucleic acid binding domain JDY60_04245 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal JDY60_04245 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JDY60_04245 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JDY60_04250 PF02863 Arginine repressor, C-terminal domain JDY60_04250 PF01316 Arginine repressor, DNA binding domain JDY60_04260 PF09269 Domain of unknown function (DUF1967) JDY60_04260 PF01018 GTP1/OBG JDY60_04260 PF01926 50S ribosome-binding GTPase JDY60_04275 PF00534 Glycosyl transferases group 1 JDY60_04275 PF13439 Glycosyltransferase Family 4 JDY60_04280 PF00534 Glycosyl transferases group 1 JDY60_04280 PF13439 Glycosyltransferase Family 4 JDY60_04285 PF01883 Iron-sulfur cluster assembly protein JDY60_04290 PF00140 Sigma-70 factor, region 1.2 JDY60_04290 PF04545 Sigma-70, region 4 JDY60_04290 PF04542 Sigma-70 region 2 JDY60_04290 PF03979 Sigma-70 factor, region 1.1 JDY60_04290 PF04539 Sigma-70 region 3 JDY60_04295 PF10410 DnaB-helicase binding domain of primase JDY60_04295 PF08275 DNA primase catalytic core, N-terminal domain JDY60_04295 PF01807 CHC2 zinc finger JDY60_04300 PF00005 ABC transporter JDY60_04315 PF00311 Phosphoenolpyruvate carboxylase JDY60_04320 PF01098 Cell cycle protein JDY60_04325 PF13145 PPIC-type PPIASE domain JDY60_04330 PF01596 O-methyltransferase JDY60_04335 PF08439 Oligopeptidase F JDY60_04335 PF01432 Peptidase family M3 JDY60_04350 PF03848 Tellurite resistance protein TehB JDY60_04350 PF09313 Domain of unknown function (DUF1971) JDY60_04355 PF01668 SmpB protein JDY60_04360 PF17876 Cold shock domain JDY60_04360 PF08206 Ribonuclease B OB domain JDY60_04360 PF00773 RNB domain JDY60_04360 PF00575 S1 RNA binding domain JDY60_04370 PF00471 Ribosomal protein L33 JDY60_04375 PF00083 Sugar (and other) transporter JDY60_04375 PF07690 Major Facilitator Superfamily JDY60_04380 PF01121 Dephospho-CoA kinase JDY60_04385 PF06827 Zinc finger found in FPG and IleRS JDY60_04385 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JDY60_04385 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JDY60_04390 PF07650 KH domain JDY60_04390 PF01926 50S ribosome-binding GTPase JDY60_04395 PF01219 Prokaryotic diacylglycerol kinase JDY60_04400 PF02130 Uncharacterized protein family UPF0054 JDY60_04405 PF05670 NFACT protein RNA binding domain JDY60_04410 PF02146 Sir2 family JDY60_04415 PF01048 Phosphorylase superfamily JDY60_04420 PF00117 Glutamine amidotransferase class-I JDY60_04425 PF01048 Phosphorylase superfamily JDY60_04435 PF01676 Metalloenzyme superfamily JDY60_04440 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JDY60_04450 PF00005 ABC transporter JDY60_04465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_04465 PF00512 His Kinase A (phospho-acceptor) domain JDY60_04470 PF00072 Response regulator receiver domain JDY60_04470 PF00486 Transcriptional regulatory protein, C terminal JDY60_04475 PF01433 Peptidase family M1 domain JDY60_04475 PF11838 ERAP1-like C-terminal domain JDY60_04485 PF00391 PEP-utilising enzyme, mobile domain JDY60_04485 PF02896 PEP-utilising enzyme, TIM barrel domain JDY60_04485 PF05524 PEP-utilising enzyme, N-terminal JDY60_04510 PF00248 Aldo/keto reductase family JDY60_04520 PF01473 Putative cell wall binding repeat JDY60_04520 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JDY60_04520 PF18342 Endo-beta-N-acetylglucosaminidase LytB WW domain JDY60_04520 PF17890 Peptidoglycan hydrolase LytB WW-like domain JDY60_04525 PF01180 Dihydroorotate dehydrogenase JDY60_04530 PF00970 Oxidoreductase FAD-binding domain JDY60_04530 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JDY60_04530 PF00175 Oxidoreductase NAD-binding domain JDY60_04535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDY60_04545 PF00012 Hsp70 protein JDY60_04550 PF00453 Ribosomal protein L20 JDY60_04555 PF01632 Ribosomal protein L35 JDY60_04560 PF00707 Translation initiation factor IF-3, C-terminal domain JDY60_04560 PF05198 Translation initiation factor IF-3, N-terminal domain JDY60_04565 PF00753 Metallo-beta-lactamase superfamily JDY60_04565 PF03772 Competence protein JDY60_04565 PF13567 Domain of unknown function (DUF4131) JDY60_04570 PF10531 SLBB domain JDY60_04580 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JDY60_04580 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JDY60_04585 PF02562 PhoH-like protein JDY60_04590 PF06855 YozE SAM-like fold JDY60_04595 PF04229 GrpB protein JDY60_04595 PF13673 Acetyltransferase (GNAT) domain JDY60_04600 PF17783 CvfB-like winged helix domain JDY60_04600 PF13509 S1 domain JDY60_04605 PF01765 Ribosome recycling factor JDY60_04610 PF00696 Amino acid kinase family JDY60_04615 PF01134 Glucose inhibited division protein A JDY60_04630 PF06156 Initiation control protein YabA JDY60_04635 PF09115 DNA polymerase III, delta subunit, C terminal JDY60_04640 PF02223 Thymidylate kinase JDY60_04645 PF03807 NADP oxidoreductase coenzyme F420-dependent JDY60_04645 PF14748 Pyrroline-5-carboxylate reductase dimerisation JDY60_04650 PF00171 Aldehyde dehydrogenase family JDY60_04655 PF00696 Amino acid kinase family JDY60_04655 PF01472 PUA domain JDY60_04660 PF01479 S4 domain JDY60_04660 PF00849 RNA pseudouridylate synthase JDY60_04665 PF01252 Signal peptidase (SPase) II JDY60_04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDY60_04670 PF03466 LysR substrate binding domain JDY60_04675 PF01016 Ribosomal L27 protein JDY60_04685 PF00829 Ribosomal prokaryotic L21 protein JDY60_04695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JDY60_04695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JDY60_04700 PF00270 DEAD/DEAH box helicase JDY60_04700 PF00271 Helicase conserved C-terminal domain JDY60_04710 PF01966 HD domain JDY60_04775 PF09827 CRISPR associated protein Cas2 JDY60_04780 PF01867 CRISPR associated protein Cas1 JDY60_04785 PF18061 CRISPR-Cas9 WED domain JDY60_04785 PF18070 CRISPR-Cas9 PI domain JDY60_04785 PF13395 HNH endonuclease JDY60_04785 PF18470 Cas9 alpha-helical lobe domain JDY60_04785 PF18541 RuvC endonuclease subdomain 3 JDY60_04795 PF01245 Ribosomal protein L19 JDY60_04800 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JDY60_04805 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JDY60_04810 PF01842 ACT domain JDY60_04810 PF01817 Chorismate mutase type II JDY60_04810 PF00800 Prephenate dehydratase JDY60_04815 PF00258 Flavodoxin JDY60_04820 PF02272 DHHA1 domain JDY60_04820 PF01368 DHH family JDY60_04830 PF01197 Ribosomal protein L31 JDY60_04835 PF01906 Putative heavy-metal-binding JDY60_04840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDY60_04840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JDY60_04840 PF02142 MGS-like domain JDY60_04845 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JDY60_04845 PF00117 Glutamine amidotransferase class-I JDY60_04850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JDY60_04850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JDY60_04855 PF00156 Phosphoribosyl transferase domain JDY60_04860 PF00633 Helix-hairpin-helix motif JDY60_04860 PF00730 HhH-GPD superfamily base excision DNA repair protein JDY60_04860 PF10576 Iron-sulfur binding domain of endonuclease III JDY60_04875 PF00005 ABC transporter JDY60_04875 PF16326 ABC transporter C-terminal domain JDY60_04875 PF12848 ABC transporter JDY60_04880 PF02517 CPBP intramembrane metalloprotease JDY60_04885 PF01435 Peptidase family M48 JDY60_04890 PF04011 LemA family JDY60_04895 PF02527 rRNA small subunit methyltransferase G JDY60_04900 PF00860 Permease family JDY60_04905 PF00892 EamA-like transporter family JDY60_04910 PF00144 Beta-lactamase JDY60_04920 PF00230 Major intrinsic protein JDY60_04940 PF02568 Thiamine biosynthesis protein (ThiI) JDY60_04940 PF02926 THUMP domain JDY60_04945 PF00266 Aminotransferase class-V JDY60_04955 PF01580 FtsK/SpoIIIE family JDY60_04955 PF17854 FtsK alpha domain JDY60_04955 PF09397 Ftsk gamma domain JDY60_04960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JDY60_04960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JDY60_04965 PF00294 pfkB family carbohydrate kinase JDY60_04970 PF00455 DeoR C terminal sensor domain JDY60_04970 PF08220 DeoR-like helix-turn-helix domain JDY60_05005 PF09587 Bacterial capsule synthesis protein PGA_cap JDY60_05010 PF01327 Polypeptide deformylase JDY60_05015 PF00588 SpoU rRNA Methylase family JDY60_05015 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDY60_05020 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDY60_05030 PF00005 ABC transporter JDY60_05035 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_05040 PF03960 ArsC family JDY60_05045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JDY60_05045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JDY60_05060 PF03006 Haemolysin-III related JDY60_05065 PF01174 SNO glutamine amidotransferase family JDY60_05070 PF01680 SOR/SNZ family JDY60_05075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDY60_05075 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDY60_05080 PF02424 ApbE family JDY60_05085 PF04205 FMN-binding domain JDY60_05085 PF00890 FAD binding domain JDY60_05085 PF03358 NADPH-dependent FMN reductase JDY60_05090 PF03358 NADPH-dependent FMN reductase JDY60_05090 PF04205 FMN-binding domain JDY60_05090 PF00890 FAD binding domain JDY60_05095 PF05979 Bacterial protein of unknown function (DUF896) JDY60_05100 PF02092 Glycyl-tRNA synthetase beta subunit JDY60_05105 PF02091 Glycyl-tRNA synthetase alpha subunit JDY60_05115 PF02225 PA domain JDY60_05115 PF00082 Subtilase family JDY60_05115 PF06280 Fn3-like domain JDY60_05120 PF00248 Aldo/keto reductase family JDY60_05125 PF01522 Polysaccharide deacetylase JDY60_05125 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain JDY60_05130 PF06160 Septation ring formation regulator, EzrA JDY60_05135 PF00986 DNA gyrase B subunit, carboxyl terminus JDY60_05135 PF01751 Toprim domain JDY60_05135 PF00204 DNA gyrase B JDY60_05135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_05145 PF01473 Putative cell wall binding repeat JDY60_05145 PF02324 Glycosyl hydrolase family 70 JDY60_05150 PF01381 Helix-turn-helix JDY60_05160 PF01098 Cell cycle protein JDY60_05165 PF00929 Exonuclease JDY60_05165 PF04851 Type III restriction enzyme, res subunit JDY60_05165 PF13307 Helicase C-terminal domain JDY60_05170 PF01256 Carbohydrate kinase JDY60_05175 PF02837 Glycosyl hydrolases family 2, sugar binding domain JDY60_05175 PF16355 Domain of unknown function (DUF4982) JDY60_05175 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JDY60_05175 PF00703 Glycosyl hydrolases family 2 JDY60_05175 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 JDY60_05185 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JDY60_05185 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JDY60_05195 PF00005 ABC transporter JDY60_05200 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_05205 PF08796 Protein of unknown function (DUF1797) JDY60_05210 PF07724 AAA domain (Cdc48 subfamily) JDY60_05210 PF10431 C-terminal, D2-small domain, of ClpB protein JDY60_05210 PF00004 ATPase family associated with various cellular activities (AAA) JDY60_05210 PF17871 AAA lid domain JDY60_05215 PF00293 NUDIX domain JDY60_05225 PF02773 S-adenosylmethionine synthetase, C-terminal domain JDY60_05225 PF02772 S-adenosylmethionine synthetase, central domain JDY60_05225 PF00438 S-adenosylmethionine synthetase, N-terminal domain JDY60_05230 PF00271 Helicase conserved C-terminal domain JDY60_05230 PF00270 DEAD/DEAH box helicase JDY60_05235 PF03372 Endonuclease/Exonuclease/phosphatase family JDY60_05240 PF02378 Phosphotransferase system, EIIC JDY60_05240 PF00367 phosphotransferase system, EIIB JDY60_05240 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JDY60_05245 PF02687 FtsX-like permease family JDY60_05245 PF18075 FtsX extracellular domain JDY60_05250 PF00005 ABC transporter JDY60_05260 PF00571 CBS domain JDY60_05260 PF01743 Poly A polymerase head domain JDY60_05265 PF00005 ABC transporter JDY60_05270 PF00005 ABC transporter JDY60_05270 PF12399 Branched-chain amino acid ATP-binding cassette transporter JDY60_05275 PF02653 Branched-chain amino acid transport system / permease component JDY60_05275 PF11862 Domain of unknown function (DUF3382) JDY60_05280 PF02653 Branched-chain amino acid transport system / permease component JDY60_05285 PF13458 Periplasmic binding protein JDY60_05290 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) JDY60_05295 PF00574 Clp protease JDY60_05305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JDY60_05315 PF02645 Uncharacterised protein, DegV family COG1307 JDY60_05330 PF13344 Haloacid dehalogenase-like hydrolase JDY60_05330 PF00293 NUDIX domain JDY60_05335 PF07739 TipAS antibiotic-recognition domain JDY60_05335 PF13411 MerR HTH family regulatory protein JDY60_05340 PF00209 Sodium:neurotransmitter symporter family JDY60_05345 PF01238 Phosphomannose isomerase type I JDY60_05350 PF00232 Glycosyl hydrolase family 1 JDY60_05370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JDY60_05370 PF00205 Thiamine pyrophosphate enzyme, central domain JDY60_05370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JDY60_05375 PF00403 Heavy-metal-associated domain JDY60_05385 PF03965 Penicillinase repressor JDY60_05390 PF08543 Phosphomethylpyrimidine kinase JDY60_05395 PF02581 Thiamine monophosphate synthase JDY60_05400 PF02110 Hydroxyethylthiazole kinase family JDY60_05410 PF03070 TENA/THI-4/PQQC family JDY60_05420 PF00005 ABC transporter JDY60_05435 PF01070 FMN-dependent dehydrogenase JDY60_05440 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_05445 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_05450 PF00005 ABC transporter JDY60_05455 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_05460 PF00156 Phosphoribosyl transferase domain JDY60_05465 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JDY60_05470 PF08478 POTRA domain, FtsQ-type JDY60_05475 PF04101 Glycosyltransferase family 28 C-terminal domain JDY60_05475 PF03033 Glycosyltransferase family 28 N-terminal domain JDY60_05480 PF02875 Mur ligase family, glutamate ligase domain JDY60_05480 PF08245 Mur ligase middle domain JDY60_05490 PF00679 Elongation factor G C-terminus JDY60_05490 PF14492 Elongation Factor G, domain II JDY60_05490 PF00009 Elongation factor Tu GTP binding domain JDY60_05490 PF03144 Elongation factor Tu domain 2 JDY60_05495 PF01479 S4 domain JDY60_05495 PF00849 RNA pseudouridylate synthase JDY60_05515 PF03466 LysR substrate binding domain JDY60_05515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JDY60_05520 PF04122 Putative cell wall binding repeat 2 JDY60_05520 PF01520 N-acetylmuramoyl-L-alanine amidase JDY60_05535 PF00082 Subtilase family JDY60_05550 PF00005 ABC transporter JDY60_05560 PF01116 Fructose-bisphosphate aldolase class-II JDY60_05565 PF00672 HAMP domain JDY60_05565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_05565 PF00512 His Kinase A (phospho-acceptor) domain JDY60_05570 PF00486 Transcriptional regulatory protein, C terminal JDY60_05570 PF00072 Response regulator receiver domain JDY60_05575 PF02687 FtsX-like permease family JDY60_05575 PF12704 MacB-like periplasmic core domain JDY60_05580 PF00005 ABC transporter JDY60_05585 PF12704 MacB-like periplasmic core domain JDY60_05585 PF02687 FtsX-like permease family JDY60_05595 PF00857 Isochorismatase family JDY60_05600 PF08222 CodY helix-turn-helix domain JDY60_05600 PF06018 CodY GAF-like domain JDY60_05605 PF00271 Helicase conserved C-terminal domain JDY60_05605 PF00270 DEAD/DEAH box helicase JDY60_05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase JDY60_05610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JDY60_05615 PF08245 Mur ligase middle domain JDY60_05615 PF08353 Domain of unknown function (DUF1727) JDY60_05620 PF07685 CobB/CobQ-like glutamine amidotransferase domain JDY60_05625 PF01321 Creatinase/Prolidase N-terminal domain JDY60_05625 PF00557 Metallopeptidase family M24 JDY60_05630 PF07155 ECF-type riboflavin transporter, S component JDY60_05635 PF08543 Phosphomethylpyrimidine kinase JDY60_05640 PF01416 tRNA pseudouridine synthase JDY60_05655 PF08274 PhnA Zinc-Ribbon JDY60_05655 PF03831 PhnA domain JDY60_05660 PF00210 Ferritin-like domain JDY60_05665 PF00121 Triosephosphate isomerase JDY60_05670 PF07261 Replication initiation and membrane attachment JDY60_05675 PF04204 Homoserine O-succinyltransferase JDY60_05680 PF00156 Phosphoribosyl transferase domain JDY60_05685 PF00687 Ribosomal protein L1p/L10e family JDY60_05690 PF03946 Ribosomal protein L11, N-terminal domain JDY60_05690 PF00298 Ribosomal protein L11, RNA binding domain JDY60_05705 PF05343 M42 glutamyl aminopeptidase JDY60_05710 PF06998 Protein of unknown function (DUF1307) JDY60_05720 PF05525 Branched-chain amino acid transport protein JDY60_05730 PF03167 Uracil DNA glycosylase superfamily JDY60_05735 PF01546 Peptidase family M20/M25/M40 JDY60_05740 PF00881 Nitroreductase family JDY60_05750 PF01541 GIY-YIG catalytic domain JDY60_05750 PF02151 UvrB/uvrC motif JDY60_05750 PF08459 UvrC Helix-hairpin-helix N-terminal JDY60_05760 PF00756 Putative esterase JDY60_05765 PF17770 Ribonuclease J C-terminal domain JDY60_05765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JDY60_05765 PF00753 Metallo-beta-lactamase superfamily JDY60_05770 PF05257 CHAP domain JDY60_05770 PF01476 LysM domain JDY60_05775 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JDY60_05775 PF17768 RecJ OB domain JDY60_05775 PF02272 DHHA1 domain JDY60_05775 PF01368 DHH family JDY60_05780 PF00005 ABC transporter JDY60_05785 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_05790 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_05795 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_05810 PF02082 Transcriptional regulator JDY60_05835 PF03129 Anticodon binding domain JDY60_05835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDY60_05835 PF02824 TGS domain JDY60_05835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JDY60_05850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_05855 PF00486 Transcriptional regulatory protein, C terminal JDY60_05855 PF00072 Response regulator receiver domain JDY60_05880 PF00970 Oxidoreductase FAD-binding domain JDY60_05880 PF00111 2Fe-2S iron-sulfur cluster binding domain JDY60_05880 PF00175 Oxidoreductase NAD-binding domain JDY60_05885 PF00753 Metallo-beta-lactamase superfamily JDY60_05890 PF01431 Peptidase family M13 JDY60_05890 PF05649 Peptidase family M13 JDY60_05895 PF00005 ABC transporter JDY60_05900 PF00950 ABC 3 transport family JDY60_05905 PF01297 Zinc-uptake complex component A periplasmic JDY60_05910 PF08534 Redoxin JDY60_05925 PF02580 D-Tyr-tRNA(Tyr) deacylase JDY60_05930 PF13291 ACT domain JDY60_05930 PF02824 TGS domain JDY60_05930 PF04607 Region found in RelA / SpoT proteins JDY60_05935 PF03459 TOBE domain JDY60_05935 PF17912 MalK OB fold domain JDY60_05935 PF00005 ABC transporter JDY60_05940 PF13556 PucR C-terminal helix-turn-helix domain JDY60_05945 PF00636 Ribonuclease III domain JDY60_05950 PF01406 tRNA synthetases class I (C) catalytic domain JDY60_05950 PF09190 DALR domain JDY60_05970 PF00132 Bacterial transferase hexapeptide (six repeats) JDY60_05970 PF06426 Serine acetyltransferase, N-terminal JDY60_05975 PF00013 KH domain JDY60_05975 PF01138 3' exoribonuclease family, domain 1 JDY60_05975 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JDY60_05975 PF03725 3' exoribonuclease family, domain 2 JDY60_05975 PF00575 S1 RNA binding domain JDY60_05980 PF02219 Methylenetetrahydrofolate reductase JDY60_05985 PF08267 Cobalamin-independent synthase, N-terminal domain JDY60_05985 PF01717 Cobalamin-independent synthase, Catalytic domain JDY60_05990 PF01381 Helix-turn-helix JDY60_06035 PF01555 DNA methylase JDY60_06040 PF00271 Helicase conserved C-terminal domain JDY60_06040 PF00176 SNF2 family N-terminal domain JDY60_06045 PF00145 C-5 cytosine-specific DNA methylase JDY60_06070 PF00480 ROK family JDY60_06075 PF02378 Phosphotransferase system, EIIC JDY60_06075 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JDY60_06075 PF00367 phosphotransferase system, EIIB JDY60_06080 PF00251 Glycosyl hydrolases family 32 N-terminal domain JDY60_06080 PF08244 Glycosyl hydrolases family 32 C terminal JDY60_06085 PF00356 Bacterial regulatory proteins, lacI family JDY60_06090 PF00368 Hydroxymethylglutaryl-coenzyme A reductase JDY60_06095 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JDY60_06095 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JDY60_06110 PF03793 PASTA domain JDY60_06110 PF00069 Protein kinase domain JDY60_06120 PF01029 NusB family JDY60_06120 PF01189 16S rRNA methyltransferase RsmB/F JDY60_06125 PF02911 Formyl transferase, C-terminal domain JDY60_06125 PF00551 Formyl transferase JDY60_06130 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JDY60_06130 PF04851 Type III restriction enzyme, res subunit JDY60_06130 PF18074 Primosomal protein N C-terminal domain JDY60_06130 PF17764 3′ DNA-binding domain (3′BD) JDY60_06130 PF00271 Helicase conserved C-terminal domain JDY60_06135 PF01192 RNA polymerase Rpb6 JDY60_06140 PF00625 Guanylate kinase JDY60_06145 PF01966 HD domain JDY60_06145 PF12072 Domain of unknown function (DUF3552) JDY60_06145 PF00013 KH domain JDY60_06170 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JDY60_06180 PF05636 HIGH Nucleotidyl Transferase JDY60_06185 PF13649 Methyltransferase domain JDY60_06195 PF01966 HD domain JDY60_06200 PF01467 Cytidylyltransferase-like JDY60_06205 PF01985 CRS1 / YhbY (CRM) domain JDY60_06210 PF01926 50S ribosome-binding GTPase JDY60_06225 PF00924 Mechanosensitive ion channel JDY60_06230 PF00375 Sodium:dicarboxylate symporter family JDY60_06255 PF16996 Accessory secretory protein Sec Asp4 JDY60_06265 PF00534 Glycosyl transferases group 1 JDY60_06270 PF07517 SecA DEAD-like domain JDY60_06270 PF01043 SecA preprotein cross-linking domain JDY60_06270 PF07516 SecA Wing and Scaffold domain JDY60_06280 PF16929 Accessory Sec system GspB-transporter JDY60_06285 PF16993 Accessory Sec system protein Asp1 JDY60_06290 PF00344 SecY translocase JDY60_06295 PF01501 Glycosyl transferase family 8 JDY60_06300 PF01501 Glycosyl transferase family 8 JDY60_06305 PF00746 LPXTG cell wall anchor motif JDY60_06310 PF16658 Class II release factor RF3, C-terminal domain JDY60_06310 PF03144 Elongation factor Tu domain 2 JDY60_06310 PF00009 Elongation factor Tu GTP binding domain JDY60_06320 PF02686 Glu-tRNAGln amidotransferase C subunit JDY60_06325 PF01425 Amidase JDY60_06330 PF02934 GatB/GatE catalytic domain JDY60_06330 PF02637 GatB domain JDY60_06350 PF09285 Elongation factor P, C-terminal JDY60_06350 PF01132 Elongation factor P (EF-P) OB domain JDY60_06350 PF08207 Elongation factor P (EF-P) KOW-like domain JDY60_06355 PF03780 Asp23 family, cell envelope-related function JDY60_06360 PF01029 NusB family JDY60_06370 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JDY60_06375 PF01039 Carboxyl transferase domain JDY60_06380 PF02785 Biotin carboxylase C-terminal domain JDY60_06380 PF00289 Biotin carboxylase, N-terminal domain JDY60_06380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JDY60_06385 PF07977 FabA-like domain JDY60_06390 PF00364 Biotin-requiring enzyme JDY60_06395 PF02801 Beta-ketoacyl synthase, C-terminal domain JDY60_06395 PF00109 Beta-ketoacyl synthase, N-terminal domain JDY60_06405 PF00698 Acyl transferase domain JDY60_06410 PF03060 Nitronate monooxygenase JDY60_06415 PF00550 Phosphopantetheine attachment site JDY60_06420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JDY60_06420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JDY60_06425 PF01047 MarR family JDY60_06430 PF00378 Enoyl-CoA hydratase/isomerase JDY60_06435 PF13840 ACT domain JDY60_06435 PF00696 Amino acid kinase family JDY60_06445 PF02403 Seryl-tRNA synthetase N-terminal domain JDY60_06445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDY60_06465 PF01235 Sodium:alanine symporter family JDY60_06470 PF00488 MutS domain V JDY60_06470 PF01713 Smr domain JDY60_06485 PF01351 Ribonuclease HII JDY60_06485 PF11858 Domain of unknown function (DUF3378) JDY60_06490 PF10502 Signal peptidase, peptidase S26 JDY60_06495 PF14490 Helix-hairpin-helix containing domain JDY60_06495 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JDY60_06495 PF13538 UvrD-like helicase C-terminal domain JDY60_06500 PF05698 Bacterial trigger factor protein (TF) C-terminus JDY60_06500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JDY60_06500 PF05697 Bacterial trigger factor protein (TF) JDY60_06510 PF00072 Response regulator receiver domain JDY60_06510 PF00196 Bacterial regulatory proteins, luxR family JDY60_06515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_06515 PF07730 Histidine kinase JDY60_06525 PF01070 FMN-dependent dehydrogenase JDY60_06530 PF00288 GHMP kinases N terminal domain JDY60_06530 PF08544 GHMP kinases C terminal JDY60_06540 PF10509 Galactokinase galactose-binding signature JDY60_06540 PF08544 GHMP kinases C terminal JDY60_06540 PF00288 GHMP kinases N terminal domain JDY60_06555 PF00072 Response regulator receiver domain JDY60_06555 PF00486 Transcriptional regulatory protein, C terminal JDY60_06560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JDY60_06560 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JDY60_06565 PF18041 MapZ extracellular domain 1 JDY60_06565 PF18708 MapZ extracellular C-terminal domain 2 JDY60_06570 PF01170 Putative RNA methylase family UPF0020 JDY60_06570 PF02926 THUMP domain JDY60_06580 PF05103 DivIVA protein JDY60_06585 PF06908 YspA SLOG family JDY60_06590 PF03838 Recombination protein U JDY60_06595 PF00912 Transglycosylase JDY60_06595 PF00905 Penicillin binding protein transpeptidase domain JDY60_06600 PF07555 beta-N-acetylglucosaminidase JDY60_06600 PF02838 Glycosyl hydrolase family 20, domain 2 JDY60_06600 PF00754 F5/8 type C domain JDY60_06600 PF00404 Dockerin type I domain JDY60_06605 PF18080 Galactose mutarotase-like fold domain JDY60_06605 PF17974 Galactose-binding domain-like JDY60_06605 PF00754 F5/8 type C domain JDY60_06605 PF04650 YSIRK type signal peptide JDY60_06605 PF12905 Endo-alpha-N-acetylgalactosaminidase JDY60_06605 PF17451 Glycosyl hydrolase 101 beta sandwich domain JDY60_06605 PF17451 Glycosyl hydrolase 101 beta sandwich domain JDY60_06605 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal JDY60_06605 PF17995 Endo-alpha-N-acetylgalactosaminidase N-terminal JDY60_06605 PF17974 Galactose-binding domain-like JDY60_06605 PF18080 Galactose mutarotase-like fold domain JDY60_06605 PF00754 F5/8 type C domain JDY60_06605 PF04650 YSIRK type signal peptide JDY60_06605 PF12905 Endo-alpha-N-acetylgalactosaminidase JDY60_06610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDY60_06615 PF04321 RmlD substrate binding domain JDY60_06620 PF16363 GDP-mannose 4,6 dehydratase JDY60_06625 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JDY60_06630 PF00483 Nucleotidyl transferase JDY60_06640 PF03275 UDP-galactopyranose mutase JDY60_06655 PF01501 Glycosyl transferase family 8 JDY60_06655 PF00535 Glycosyl transferase family 2 JDY60_06660 PF17101 Stealth protein CR1, conserved region 1 JDY60_06660 PF11380 Stealth protein CR2, conserved region 2 JDY60_06660 PF17102 Stealth protein CR3, conserved region 3 JDY60_06670 PF00534 Glycosyl transferases group 1 JDY60_06670 PF13439 Glycosyltransferase Family 4 JDY60_06680 PF02397 Bacterial sugar transferase JDY60_06685 PF13614 AAA domain JDY60_06690 PF02706 Chain length determinant protein JDY60_06705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDY60_06710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDY60_06730 PF00380 Ribosomal protein S9/S16 JDY60_06735 PF00572 Ribosomal protein L13 JDY60_06745 PF00005 ABC transporter JDY60_06745 PF13732 Domain of unknown function (DUF4162) JDY60_06750 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JDY60_06750 PF03483 B3/4 domain JDY60_06750 PF03484 tRNA synthetase B5 domain JDY60_06750 PF03147 Ferredoxin-fold anticodon binding domain JDY60_06750 PF01588 Putative tRNA binding domain JDY60_06755 PF01409 tRNA synthetases class II core domain (F) JDY60_06755 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JDY60_06760 PF01569 PAP2 superfamily JDY60_06765 PF12822 ECF transporter, substrate-specific component JDY60_06770 PF00588 SpoU rRNA Methylase family JDY60_06775 PF02080 TrkA-C domain JDY60_06775 PF02254 TrkA-N domain JDY60_06780 PF02386 Cation transport protein JDY60_06785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDY60_06785 PF00005 ABC transporter JDY60_06790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JDY60_06790 PF00005 ABC transporter JDY60_06795 PF12911 N-terminal TM domain of oligopeptide transport permease C JDY60_06795 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_06800 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_06805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JDY60_06815 PF00571 CBS domain JDY60_06815 PF03471 Transporter associated domain JDY60_06815 PF01595 Cyclin M transmembrane N-terminal domain JDY60_06825 PF11772 DNA-directed RNA polymerase subunit beta JDY60_06830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JDY60_06840 PF13180 PDZ domain JDY60_06840 PF05362 Lon protease (S16) C-terminal proteolytic domain JDY60_06845 PF01467 Cytidylyltransferase-like JDY60_06855 PF03590 Aspartate-ammonia ligase JDY60_06860 PF01027 Inhibitor of apoptosis-promoting Bax1 JDY60_06865 PF08032 RNA 2'-O ribose methyltransferase substrate binding JDY60_06865 PF00588 SpoU rRNA Methylase family JDY60_06870 PF00708 Acylphosphatase JDY60_06875 PF02096 60Kd inner membrane protein JDY60_06880 PF04055 Radical SAM superfamily JDY60_06885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JDY60_06885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JDY60_06890 PF09182 Bacterial purine repressor, N-terminal JDY60_06890 PF00156 Phosphoribosyl transferase domain JDY60_06895 PF01966 HD domain JDY60_06895 PF01336 OB-fold nucleic acid binding domain JDY60_06900 PF02646 RmuC family JDY60_06905 PF04263 Thiamin pyrophosphokinase, catalytic domain JDY60_06905 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain JDY60_06910 PF00834 Ribulose-phosphate 3 epimerase family JDY60_06915 PF03193 RsgA GTPase JDY60_06915 PF16745 RsgA N-terminal domain JDY60_06920 PF00398 Ribosomal RNA adenine dimethylase JDY60_06935 PF13331 Domain of unknown function (DUF4093) JDY60_06940 PF01026 TatD related DNase JDY60_06945 PF13520 Amino acid permease JDY60_06950 PF00468 Ribosomal protein L34 JDY60_06955 PF00155 Aminotransferase class I and II JDY60_06965 PF00582 Universal stress protein family JDY60_06980 PF00710 Asparaginase, N-terminal JDY60_06980 PF17763 Glutaminase/Asparaginase C-terminal domain JDY60_06985 PF00356 Bacterial regulatory proteins, lacI family JDY60_07000 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JDY60_07000 PF02152 Dihydroneopterin aldolase JDY60_07005 PF01227 GTP cyclohydrolase I JDY60_07010 PF02875 Mur ligase family, glutamate ligase domain JDY60_07010 PF08245 Mur ligase middle domain JDY60_07015 PF00809 Pterin binding enzyme JDY60_07025 PF00860 Permease family JDY60_07035 PF03610 PTS system fructose IIA component JDY60_07035 PF03830 PTS system sorbose subfamily IIB component JDY60_07040 PF03609 PTS system sorbose-specific iic component JDY60_07045 PF03613 PTS system mannose/fructose/sorbose family IID component JDY60_07055 PF03051 Peptidase C1-like family JDY60_07060 PF00849 RNA pseudouridylate synthase JDY60_07060 PF01479 S4 domain JDY60_07065 PF04226 Transglycosylase associated protein JDY60_07070 PF02073 Thermophilic metalloprotease (M29) JDY60_07100 PF07733 Bacterial DNA polymerase III alpha NTPase domain JDY60_07100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JDY60_07100 PF02811 PHP domain JDY60_07100 PF00929 Exonuclease JDY60_07100 PF14480 DNA polymerase III polC-type N-terminus I JDY60_07100 PF11490 DNA polymerase III polC-type N-terminus II JDY60_07180 PF02357 Transcription termination factor nusG JDY60_07180 PF00467 KOW motif JDY60_07190 PF00471 Ribosomal protein L33 JDY60_07195 PF00912 Transglycosylase JDY60_07195 PF00905 Penicillin binding protein transpeptidase domain JDY60_07200 PF00849 RNA pseudouridylate synthase JDY60_07205 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JDY60_07205 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JDY60_07210 PF00465 Iron-containing alcohol dehydrogenase JDY60_07210 PF00171 Aldehyde dehydrogenase family JDY60_07220 PF01451 Low molecular weight phosphotyrosine protein phosphatase JDY60_07225 PF02699 Preprotein translocase subunit JDY60_07230 PF02779 Transketolase, pyrimidine binding domain JDY60_07230 PF02780 Transketolase, C-terminal domain JDY60_07230 PF00456 Transketolase, thiamine diphosphate binding domain JDY60_07240 PF14804 Jag N-terminus JDY60_07240 PF01424 R3H domain JDY60_07245 PF02096 60Kd inner membrane protein JDY60_07250 PF00825 Ribonuclease P JDY60_07255 PF00871 Acetokinase family JDY60_07290 PF07963 Prokaryotic N-terminal methylation motif JDY60_07295 PF00482 Type II secretion system (T2SS), protein F JDY60_07300 PF00437 Type II/IV secretion system protein JDY60_07310 PF01979 Amidohydrolase family JDY60_07315 PF01757 Acyltransferase family JDY60_07320 PF01702 Queuine tRNA-ribosyltransferase JDY60_07330 PF06993 Protein of unknown function (DUF1304) JDY60_07350 PF13419 Haloacid dehalogenase-like hydrolase JDY60_07355 PF01554 MatE JDY60_07360 PF00291 Pyridoxal-phosphate dependent enzyme JDY60_07360 PF14821 Threonine synthase N terminus JDY60_07460 PF00749 tRNA synthetases class I (E and Q), catalytic domain JDY60_07465 PF00342 Phosphoglucose isomerase JDY60_07470 PF07722 Peptidase C26 JDY60_07475 PF00005 ABC transporter JDY60_07475 PF00664 ABC transporter transmembrane region JDY60_07480 PF00664 ABC transporter transmembrane region JDY60_07480 PF00005 ABC transporter JDY60_07485 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JDY60_07485 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JDY60_07490 PF00483 Nucleotidyl transferase JDY60_07500 PF01812 5-formyltetrahydrofolate cyclo-ligase family JDY60_07505 PF01546 Peptidase family M20/M25/M40 JDY60_07505 PF07687 Peptidase dimerisation domain JDY60_07510 PF00132 Bacterial transferase hexapeptide (six repeats) JDY60_07510 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal JDY60_07510 PF14602 Hexapeptide repeat of succinyl-transferase JDY60_07515 PF00892 EamA-like transporter family JDY60_07520 PF00905 Penicillin binding protein transpeptidase domain JDY60_07520 PF00912 Transglycosylase JDY60_07525 PF01479 S4 domain JDY60_07525 PF00579 tRNA synthetases class I (W and Y) JDY60_07530 PF00403 Heavy-metal-associated domain JDY60_07540 PF13847 Methyltransferase domain JDY60_07545 PF00343 Carbohydrate phosphorylase JDY60_07550 PF02446 4-alpha-glucanotransferase JDY60_07555 PF13416 Bacterial extracellular solute-binding protein JDY60_07560 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_07565 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_07575 PF00356 Bacterial regulatory proteins, lacI family JDY60_07575 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JDY60_07580 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JDY60_07580 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JDY60_07585 PF02938 GAD domain JDY60_07585 PF00152 tRNA synthetases class II (D, K and N) JDY60_07585 PF01336 OB-fold nucleic acid binding domain JDY60_07620 PF01381 Helix-turn-helix JDY60_07625 PF03129 Anticodon binding domain JDY60_07625 PF13393 Histidyl-tRNA synthetase JDY60_07630 PF01883 Iron-sulfur cluster assembly protein JDY60_07635 PF00920 Dehydratase family JDY60_07640 PF01783 Ribosomal L32p protein family JDY60_07645 PF00471 Ribosomal protein L33 JDY60_07685 PF01479 S4 domain JDY60_07685 PF00163 Ribosomal protein S4/S9 N-terminal domain JDY60_07690 PF00512 His Kinase A (phospho-acceptor) domain JDY60_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_07695 PF00486 Transcriptional regulatory protein, C terminal JDY60_07695 PF00072 Response regulator receiver domain JDY60_07710 PF02386 Cation transport protein JDY60_07720 PF00440 Bacterial regulatory proteins, tetR family JDY60_07730 PF00005 ABC transporter JDY60_07740 PF14602 Hexapeptide repeat of succinyl-transferase JDY60_07740 PF12464 Maltose acetyltransferase JDY60_07745 PF01206 Sulfurtransferase TusA JDY60_07745 PF00581 Rhodanese-like domain JDY60_07750 PF01206 Sulfurtransferase TusA JDY60_07750 PF00581 Rhodanese-like domain JDY60_07755 PF02583 Metal-sensitive transcriptional repressor JDY60_07790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JDY60_07795 PF01263 Aldose 1-epimerase JDY60_07800 PF01791 DeoC/LacD family aldolase JDY60_07805 PF01380 SIS domain JDY60_07815 PF03613 PTS system mannose/fructose/sorbose family IID component JDY60_07820 PF03609 PTS system sorbose-specific iic component JDY60_07825 PF03830 PTS system sorbose subfamily IIB component JDY60_07830 PF01301 Glycosyl hydrolases family 35 JDY60_07835 PF00392 Bacterial regulatory proteins, gntR family JDY60_07835 PF07702 UTRA domain JDY60_07840 PF07501 G5 domain JDY60_07840 PF04650 YSIRK type signal peptide JDY60_07840 PF00728 Glycosyl hydrolase family 20, catalytic domain JDY60_07840 PF00746 LPXTG cell wall anchor motif JDY60_07845 PF00206 Lyase JDY60_07845 PF10397 Adenylosuccinate lyase C-terminus JDY60_07860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JDY60_07860 PF02222 ATP-grasp domain JDY60_07860 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JDY60_07865 PF00731 AIR carboxylase JDY60_07870 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JDY60_07870 PF02843 Phosphoribosylglycinamide synthetase, C domain JDY60_07870 PF02844 Phosphoribosylglycinamide synthetase, N domain JDY60_07890 PF01808 AICARFT/IMPCHase bienzyme JDY60_07890 PF02142 MGS-like domain JDY60_07900 PF00551 Formyl transferase JDY60_07905 PF02769 AIR synthase related protein, C-terminal domain JDY60_07905 PF00586 AIR synthase related protein, N-terminal domain JDY60_07910 PF00156 Phosphoribosyl transferase domain JDY60_07910 PF13537 Glutamine amidotransferase domain JDY60_07915 PF00586 AIR synthase related protein, N-terminal domain JDY60_07915 PF02769 AIR synthase related protein, C-terminal domain JDY60_07915 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JDY60_07920 PF01259 SAICAR synthetase JDY60_07930 PF00664 ABC transporter transmembrane region JDY60_07930 PF03412 Peptidase C39 family JDY60_07930 PF00005 ABC transporter JDY60_07965 PF00550 Phosphopantetheine attachment site JDY60_07970 PF02504 Fatty acid synthesis protein JDY60_07975 PF11967 Recombination protein O N terminal JDY60_07975 PF02565 Recombination protein O C terminal JDY60_07980 PF00155 Aminotransferase class I and II JDY60_07985 PF03601 Conserved hypothetical protein 698 JDY60_07990 PF13380 CoA binding domain JDY60_07995 PF14572 Phosphoribosyl synthetase-associated domain JDY60_07995 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JDY60_08000 PF00484 Carbonic anhydrase JDY60_08015 PF00692 dUTPase JDY60_08025 PF14437 MafB19-like deaminase JDY60_08030 PF00709 Adenylosuccinate synthetase JDY60_08070 PF06480 FtsH Extracellular JDY60_08070 PF17862 AAA+ lid domain JDY60_08070 PF00004 ATPase family associated with various cellular activities (AAA) JDY60_08070 PF01434 Peptidase family M41 JDY60_08075 PF00156 Phosphoribosyl transferase domain JDY60_08080 PF01171 PP-loop family JDY60_08080 PF11734 TilS substrate C-terminal domain JDY60_08095 PF01479 S4 domain JDY60_08100 PF17757 UvrB interaction domain JDY60_08100 PF02559 CarD-like/TRCF domain JDY60_08100 PF03461 TRCF domain JDY60_08100 PF00271 Helicase conserved C-terminal domain JDY60_08100 PF00270 DEAD/DEAH box helicase JDY60_08105 PF01195 Peptidyl-tRNA hydrolase JDY60_08110 PF01926 50S ribosome-binding GTPase JDY60_08110 PF06071 Protein of unknown function (DUF933) JDY60_08120 PF00712 DNA polymerase III beta subunit, N-terminal domain JDY60_08120 PF02768 DNA polymerase III beta subunit, C-terminal domain JDY60_08120 PF02767 DNA polymerase III beta subunit, central domain JDY60_08125 PF00308 Bacterial dnaA protein JDY60_08125 PF08299 Bacterial dnaA protein helix-turn-helix JDY60_08130 PF02195 ParB-like nuclease domain JDY60_08130 PF17762 HTH domain found in ParB protein JDY60_08135 PF13180 PDZ domain JDY60_08140 PF02590 Predicted SPOUT methyltransferase JDY60_08150 PF03047 COMC family JDY60_08190 PF12848 ABC transporter JDY60_08190 PF00005 ABC transporter JDY60_08195 PF00579 tRNA synthetases class I (W and Y) JDY60_08200 PF00571 CBS domain JDY60_08200 PF00478 IMP dehydrogenase / GMP reductase domain JDY60_08205 PF02463 RecF/RecN/SMC N terminal domain JDY60_08215 PF05193 Peptidase M16 inactive domain JDY60_08215 PF00675 Insulinase (Peptidase family M16) JDY60_08220 PF00675 Insulinase (Peptidase family M16) JDY60_08220 PF05193 Peptidase M16 inactive domain JDY60_08230 PF01066 CDP-alcohol phosphatidyltransferase JDY60_08235 PF00005 ABC transporter JDY60_08240 PF00005 ABC transporter JDY60_08245 PF02361 Cobalt transport protein JDY60_08250 PF04085 rod shape-determining protein MreC JDY60_08260 PF05257 CHAP domain JDY60_08260 PF01476 LysM domain JDY60_08265 PF00318 Ribosomal protein S2 JDY60_08270 PF00889 Elongation factor TS JDY60_08275 PF00291 Pyridoxal-phosphate dependent enzyme JDY60_08285 PF01205 Uncharacterized protein family UPF0029 JDY60_08285 PF09186 Domain of unknown function (DUF1949) JDY60_08290 PF04851 Type III restriction enzyme, res subunit JDY60_08290 PF00271 Helicase conserved C-terminal domain JDY60_08300 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JDY60_08300 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JDY60_08305 PF02803 Thiolase, C-terminal domain JDY60_08305 PF00108 Thiolase, N-terminal domain JDY60_08310 PF02272 DHHA1 domain JDY60_08310 PF01368 DHH family JDY60_08315 PF01281 Ribosomal protein L9, N-terminal domain JDY60_08315 PF03948 Ribosomal protein L9, C-terminal domain JDY60_08320 PF00772 DnaB-like helicase N terminal domain JDY60_08320 PF03796 DnaB-like helicase C terminal domain JDY60_08340 PF01367 5'-3' exonuclease, C-terminal SAM fold JDY60_08340 PF00476 DNA polymerase family A JDY60_08340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JDY60_08350 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_08355 PF09084 NMT1/THI5 like JDY60_08360 PF00005 ABC transporter JDY60_08370 PF05848 CtsR N-terminal HTH domain JDY60_08370 PF17727 CtsR C-terminal dimerization domain JDY60_08375 PF00004 ATPase family associated with various cellular activities (AAA) JDY60_08375 PF17871 AAA lid domain JDY60_08375 PF02861 Clp amino terminal domain, pathogenicity island component JDY60_08375 PF10431 C-terminal, D2-small domain, of ClpB protein JDY60_08375 PF07724 AAA domain (Cdc48 subfamily) JDY60_08380 PF01467 Cytidylyltransferase-like JDY60_08385 PF04973 Nicotinamide mononucleotide transporter JDY60_08405 PF01207 Dihydrouridine synthase (Dus) JDY60_08410 PF01430 Hsp33 protein JDY60_08420 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JDY60_08420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JDY60_08425 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JDY60_08425 PF01266 FAD dependent oxidoreductase JDY60_08430 PF00230 Major intrinsic protein JDY60_08440 PF13193 AMP-binding enzyme C-terminal domain JDY60_08440 PF00501 AMP-binding enzyme JDY60_08445 PF03062 MBOAT, membrane-bound O-acyltransferase family JDY60_08450 PF00550 Phosphopantetheine attachment site JDY60_08455 PF04914 DltD protein JDY60_08460 PF02872 5'-nucleotidase, C-terminal domain JDY60_08460 PF00149 Calcineurin-like phosphoesterase JDY60_08465 PF01047 MarR family JDY60_08470 PF00005 ABC transporter JDY60_08475 PF00950 ABC 3 transport family JDY60_08480 PF01297 Zinc-uptake complex component A periplasmic JDY60_08480 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JDY60_08490 PF17678 Glycosyl hydrolase family 92 N-terminal domain JDY60_08490 PF07971 Glycosyl hydrolase family 92 JDY60_08505 PF01074 Glycosyl hydrolases family 38 N-terminal domain JDY60_08505 PF07748 Glycosyl hydrolases family 38 C-terminal domain JDY60_08505 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 JDY60_08505 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain JDY60_08505 PF09261 Alpha mannosidase middle domain JDY60_08510 PF00480 ROK family JDY60_08520 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_08525 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_08530 PF12010 Domain of unknown function (DUF3502) JDY60_08545 PF00581 Rhodanese-like domain JDY60_08545 PF12368 Rhodanase C-terminal JDY60_08545 PF17773 UPF0176 acylphosphatase like domain JDY60_08575 PF07690 Major Facilitator Superfamily JDY60_08580 PF00535 Glycosyl transferase family 2 JDY60_08585 PF02719 Polysaccharide biosynthesis protein JDY60_08590 PF13419 Haloacid dehalogenase-like hydrolase JDY60_08595 PF03313 Serine dehydratase alpha chain JDY60_08600 PF01842 ACT domain JDY60_08600 PF03315 Serine dehydratase beta chain JDY60_08605 PF01476 LysM domain JDY60_08605 PF06725 3D domain JDY60_08610 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_08615 PF00764 Arginosuccinate synthase JDY60_08620 PF00206 Lyase JDY60_08620 PF14698 Argininosuccinate lyase C-terminal JDY60_08630 PF00293 NUDIX domain JDY60_08635 PF00293 NUDIX domain JDY60_08640 PF01134 Glucose inhibited division protein A JDY60_08640 PF13932 GidA associated domain JDY60_08645 PF00753 Metallo-beta-lactamase superfamily JDY60_08645 PF17770 Ribonuclease J C-terminal domain JDY60_08645 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JDY60_08650 PF07288 Protein of unknown function (DUF1447) JDY60_08665 PF00814 Glycoprotease family JDY60_08675 PF00814 Glycoprotease family JDY60_08680 PF01381 Helix-turn-helix JDY60_08710 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_08715 PF03180 NLPA lipoprotein JDY60_08720 PF07687 Peptidase dimerisation domain JDY60_08720 PF01546 Peptidase family M20/M25/M40 JDY60_08725 PF00005 ABC transporter JDY60_08725 PF09383 NIL domain JDY60_08730 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_08745 PF06580 Histidine kinase JDY60_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JDY60_08745 PF00672 HAMP domain JDY60_08745 PF02743 Cache domain JDY60_08750 PF00072 Response regulator receiver domain JDY60_08750 PF12833 Helix-turn-helix domain JDY60_08760 PF07972 NrdI Flavodoxin like JDY60_08775 PF03485 Arginyl tRNA synthetase N terminal domain JDY60_08775 PF05746 DALR anticodon binding domain JDY60_08775 PF00750 tRNA synthetases class I (R) JDY60_08780 PF01316 Arginine repressor, DNA binding domain JDY60_08780 PF02863 Arginine repressor, C-terminal domain JDY60_08785 PF05188 MutS domain II JDY60_08785 PF01624 MutS domain I JDY60_08785 PF05192 MutS domain III JDY60_08785 PF05190 MutS family domain IV JDY60_08785 PF00488 MutS domain V JDY60_08795 PF04397 LytTr DNA-binding domain JDY60_08800 PF01119 DNA mismatch repair protein, C-terminal domain JDY60_08800 PF08676 MutL C terminal dimerisation domain JDY60_08805 PF01381 Helix-turn-helix JDY60_08815 PF07499 RuvA, C-terminal domain JDY60_08815 PF01330 RuvA N terminal domain JDY60_08820 PF03352 Methyladenine glycosylase JDY60_08850 PF17755 UvrA DNA-binding domain JDY60_08850 PF17760 UvrA interaction domain JDY60_08850 PF00005 ABC transporter JDY60_08855 PF01321 Creatinase/Prolidase N-terminal domain JDY60_08855 PF00557 Metallopeptidase family M24 JDY60_08860 PF00689 Cation transporting ATPase, C-terminus JDY60_08860 PF00690 Cation transporter/ATPase, N-terminus JDY60_08865 PF03960 ArsC family JDY60_08875 PF06135 IreB regulatory phosphoprotein JDY60_08880 PF03652 Holliday junction resolvase JDY60_08885 PF06949 Protein of unknown function (DUF1292) JDY60_08890 PF02875 Mur ligase family, glutamate ligase domain JDY60_08890 PF08245 Mur ligase middle domain JDY60_08900 PF00465 Iron-containing alcohol dehydrogenase JDY60_08910 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JDY60_08915 PF00753 Metallo-beta-lactamase superfamily JDY60_08925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JDY60_08925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JDY60_08930 PF13091 PLD-like domain JDY60_08945 PF03477 ATP cone domain JDY60_08945 PF13597 Anaerobic ribonucleoside-triphosphate reductase JDY60_08975 PF00338 Ribosomal protein S10p/S20e JDY60_08980 PF00297 Ribosomal protein L3 JDY60_08985 PF00573 Ribosomal protein L4/L1 family JDY60_08990 PF00276 Ribosomal protein L23 JDY60_08995 PF00181 Ribosomal Proteins L2, RNA binding domain JDY60_08995 PF03947 Ribosomal Proteins L2, C-terminal domain JDY60_09000 PF00203 Ribosomal protein S19 JDY60_09005 PF00237 Ribosomal protein L22p/L17e JDY60_09010 PF00189 Ribosomal protein S3, C-terminal domain JDY60_09010 PF07650 KH domain JDY60_09015 PF00252 Ribosomal protein L16p/L10e JDY60_09020 PF00831 Ribosomal L29 protein JDY60_09025 PF00366 Ribosomal protein S17 JDY60_09030 PF00238 Ribosomal protein L14p/L23e JDY60_09035 PF00467 KOW motif JDY60_09035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JDY60_09040 PF00281 Ribosomal protein L5 JDY60_09040 PF00673 ribosomal L5P family C-terminus JDY60_09045 PF00253 Ribosomal protein S14p/S29e JDY60_09050 PF00410 Ribosomal protein S8 JDY60_09055 PF00347 Ribosomal protein L6 JDY60_09060 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JDY60_09065 PF03719 Ribosomal protein S5, C-terminal domain JDY60_09065 PF00333 Ribosomal protein S5, N-terminal domain JDY60_09070 PF00327 Ribosomal protein L30p/L7e JDY60_09075 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JDY60_09080 PF00344 SecY translocase JDY60_09090 PF01176 Translation initiation factor 1A / IF-1 JDY60_09095 PF00444 Ribosomal protein L36 JDY60_09100 PF00416 Ribosomal protein S13/S18 JDY60_09105 PF00411 Ribosomal protein S11 JDY60_09110 PF01000 RNA polymerase Rpb3/RpoA insert domain JDY60_09110 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JDY60_09110 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JDY60_09115 PF01196 Ribosomal protein L17 JDY60_09125 PF05167 Uncharacterised ACR (DUF711) JDY60_09130 PF00300 Histidine phosphatase superfamily (branch 1) JDY60_09135 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_09140 PF00005 ABC transporter JDY60_09140 PF08402 TOBE domain JDY60_09145 PF13416 Bacterial extracellular solute-binding protein JDY60_09150 PF13603 Leucyl-tRNA synthetase, Domain 2 JDY60_09150 PF09334 tRNA synthetases class I (M) JDY60_09150 PF00133 tRNA synthetases class I (I, L, M and V) JDY60_09150 PF08264 Anticodon-binding domain of tRNA JDY60_09165 PF12833 Helix-turn-helix domain JDY60_09165 PF02311 AraC-like ligand binding domain JDY60_09170 PF07690 Major Facilitator Superfamily JDY60_09175 PF04205 FMN-binding domain JDY60_09175 PF00890 FAD binding domain JDY60_09175 PF03358 NADPH-dependent FMN reductase JDY60_09180 PF03358 NADPH-dependent FMN reductase JDY60_09180 PF04205 FMN-binding domain JDY60_09180 PF00890 FAD binding domain JDY60_09185 PF17864 RuvB AAA lid domain JDY60_09185 PF05491 RuvB C-terminal winged helix domain JDY60_09185 PF05496 Holliday junction DNA helicase RuvB P-loop domain JDY60_09195 PF01255 Putative undecaprenyl diphosphate synthase JDY60_09205 PF02163 Peptidase family M50 JDY60_09210 PF04073 Aminoacyl-tRNA editing domain JDY60_09210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JDY60_09210 PF03129 Anticodon binding domain JDY60_09215 PF00232 Glycosyl hydrolase family 1 JDY60_09220 PF00892 EamA-like transporter family JDY60_09225 PF01380 SIS domain JDY60_09235 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) JDY60_09255 PF00497 Bacterial extracellular solute-binding proteins, family 3 JDY60_09260 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_09265 PF00528 Binding-protein-dependent transport system inner membrane component JDY60_09270 PF00005 ABC transporter JDY60_09275 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JDY60_09275 PF00128 Alpha amylase, catalytic domain JDY60_09275 PF03714 Bacterial pullanase-associated domain JDY60_09280 PF04565 RNA polymerase Rpb2, domain 3 JDY60_09280 PF10385 RNA polymerase beta subunit external 1 domain JDY60_09280 PF04561 RNA polymerase Rpb2, domain 2 JDY60_09280 PF00562 RNA polymerase Rpb2, domain 6 JDY60_09280 PF04560 RNA polymerase Rpb2, domain 7 JDY60_09280 PF04563 RNA polymerase beta subunit JDY60_09285 PF05000 RNA polymerase Rpb1, domain 4 JDY60_09285 PF04997 RNA polymerase Rpb1, domain 1 JDY60_09285 PF00623 RNA polymerase Rpb1, domain 2 JDY60_09285 PF04983 RNA polymerase Rpb1, domain 3 JDY60_09285 PF04998 RNA polymerase Rpb1, domain 5 JDY60_09290 PF00334 Nucleoside diphosphate kinase JDY60_09300 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JDY60_09310 PF03816 Cell envelope-related transcriptional attenuator domain JDY60_09315 PF00994 Probable molybdopterin binding domain JDY60_09315 PF18146 Damage-inducible protein CinA KH domain JDY60_09315 PF02464 Competence-damaged protein JDY60_09320 PF00154 recA bacterial DNA recombination protein JDY60_09335 PF01554 MatE JDY60_09340 PF01709 Transcriptional regulator JDY60_09345 PF14659 Phage integrase, N-terminal SAM-like domain JDY60_09345 PF00589 Phage integrase family JDY60_09360 PF01381 Helix-turn-helix JDY60_09440 PF14284 PcfJ-like protein JDY60_09485 PF00589 Phage integrase family