locus-tag	class	description
JQM34_00010	COG3458	cephalosporin-C deacetylase activity
JQM34_000100	COG1098	S1 RNA binding domain
JQM34_0001000	COG0799	negative regulation of ribosome biogenesis
JQM34_0001001	COG1713	HD superfamily hydrolase involved in NAD metabolism
JQM34_0001002	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JQM34_0001003	COG1534	Rna-binding protein
JQM34_0001004	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JQM34_0001005	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JQM34_0001007	COG0668	transmembrane transport
JQM34_0001008	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JQM34_000101	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JQM34_0001014	COG0438	transferase activity, transferring glycosyl groups
JQM34_0001015	COG0438	transferase activity, transferring glycosyl groups
JQM34_0001016	COG0653	protein targeting
JQM34_000102	COG2827	Endonuclease containing a URI domain
JQM34_0001021	COG0201	protein transport
JQM34_0001022	COG1442	glycosyl transferase family 8
JQM34_0001023	COG1442	glycosyl transferase family 8
JQM34_0001025	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JQM34_0001038	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JQM34_0001039	COG0439	Biotin carboxylase
JQM34_0001042	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JQM34_0001043	COG1028	Short-chain dehydrogenase reductase Sdr
JQM34_0001044	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JQM34_0001046	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JQM34_0001048	COG1846	Transcriptional regulator
JQM34_0001049	COG1024	Enoyl-CoA hydratase
JQM34_0001050	COG0527	aspartate kinase activity
JQM34_0001056	COG1115	amino acid carrier protein
JQM34_0001061	COG0681	Belongs to the peptidase S26 family
JQM34_0001062	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JQM34_0001063	COG0544	peptidyl-prolyl cis-trans isomerase activity
JQM34_0001065	COG2197	response regulator
JQM34_0001066	COG4585	Histidine kinase
JQM34_0001073	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JQM34_0001076	COG0745	RESPONSE REGULATOR receiver
JQM34_0001077	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JQM34_0001079	COG0116	Belongs to the methyltransferase superfamily
JQM34_000108	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JQM34_0001085	COG0366	Alpha amylase catalytic
JQM34_0001085	COG0366	Alpha amylase catalytic
JQM34_0001086	COG4166	transmembrane transport
JQM34_0001087	COG1091	dTDP-4-dehydrorhamnose reductase activity
JQM34_0001088	COG1088	dTDP-glucose 4,6-dehydratase activity
JQM34_000109	COG2244	polysaccharide biosynthetic process
JQM34_0001090	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JQM34_0001091	COG0438	transferase activity, transferring glycosyl groups
JQM34_0001092	COG0562	UDP-galactopyranose mutase
JQM34_0001095	COG1442	glycosyl transferase family 8
JQM34_0001095	COG1216	Glycosyl transferase, family 2
JQM34_0001098	COG0297	glycogen (starch) synthase activity
JQM34_0001100	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JQM34_0001101	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JQM34_0001102	COG0489	protein tyrosine kinase activity
JQM34_0001103	COG3944	biosynthesis protein
JQM34_0001104	COG4464	protein tyrosine phosphatase activity
JQM34_0001106	COG4166	transmembrane transport
JQM34_0001107	COG4166	transmembrane transport
JQM34_000111	COG4166	transmembrane transport
JQM34_0001113	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JQM34_0001114	COG1668	transmembrane transport
JQM34_0001115	COG4152	abc transporter atp-binding protein
JQM34_0001116	COG0072	phenylalanine-tRNA ligase activity
JQM34_0001116	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JQM34_0001118	COG0671	phosphoesterase, PA-phosphatase related
JQM34_0001119	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JQM34_000112	COG0626	cystathionine gamma-synthase activity
JQM34_0001122	COG0569	domain protein
JQM34_0001123	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JQM34_0001124	COG4608	Belongs to the ABC transporter superfamily
JQM34_0001125	COG0444	Belongs to the ABC transporter superfamily
JQM34_0001126	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JQM34_0001127	COG0601	transmembrane transport
JQM34_0001128	COG4166	transmembrane transport
JQM34_000113	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JQM34_0001130	COG1253	flavin adenine dinucleotide binding
JQM34_0001134	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JQM34_0001136	COG3480	Lon protease (S16) C-terminal proteolytic domain
JQM34_0001138	COG0742	ribosomal rna small subunit methyltransferase
JQM34_000114	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JQM34_0001141	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JQM34_0001142	COG1254	Belongs to the acylphosphatase family
JQM34_0001144	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JQM34_0001146	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JQM34_0001147	COG3481	metal-dependent phosphohydrolase, HD sub domain
JQM34_0001151	COG1162	GTPase activity
JQM34_0001152	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JQM34_0001156	COG0084	hydrolase, TatD family'
JQM34_0001157	COG0531	amino acid
JQM34_0001159	COG0436	Aminotransferase
JQM34_0001161	COG0589	response to stress
JQM34_0001163	COG0561	phosphatase activity
JQM34_0001164	COG0252	asparaginase activity
JQM34_0001165	COG1609	Transcriptional regulator
JQM34_0001168	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JQM34_0001168	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JQM34_0001170	COG0285	dihydrofolate synthase activity
JQM34_0001171	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JQM34_0001173	COG2252	PERMEase
JQM34_0001174	COG0561	phosphatase activity
JQM34_0001176	COG3715	PTS system
JQM34_0001177	COG3716	PTS system mannose fructose sorbose family IID component
JQM34_0001178	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JQM34_0001179	COG3579	cysteine-type endopeptidase activity
JQM34_0001180	COG1187	pseudouridine synthase activity
JQM34_0001181	COG2261	transglycosylase associated protein
JQM34_0001182	COG2309	aminopeptidase activity
JQM34_0001188	COG2176	DNA-directed DNA polymerase activity
JQM34_000119	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JQM34_0001207	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JQM34_000121	COG1113	amino acid transport
JQM34_0001210	COG1454	alcohol dehydrogenase
JQM34_0001210	COG1012	belongs to the aldehyde dehydrogenase family
JQM34_0001212	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JQM34_0001213	COG1862	Preprotein translocase
JQM34_0001214	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JQM34_0001216	COG1847	R3H domain protein
JQM34_0001217	COG0706	membrane insertase activity
JQM34_0001226	COG4537	Required for transformation and DNA binding
JQM34_0001227	COG1459	type II secretion system
JQM34_0001228	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JQM34_0001229	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JQM34_0001235	COG3759	membrane
JQM34_0001239	COG0546	phosphoglycolate phosphatase activity
JQM34_0001240	COG0534	Mate efflux family protein
JQM34_000126	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JQM34_0001262	COG0166	Belongs to the GPI family
JQM34_0001263	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JQM34_0001264	COG1132	(ABC) transporter
JQM34_0001265	COG1132	(ABC) transporter
JQM34_0001267	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JQM34_0001269	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JQM34_0001272	COG0697	spore germination
JQM34_0001273	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JQM34_0001273	COG4499	WXG100 protein secretion system (Wss), protein YukC
JQM34_0001275	COG2217	Heavy metal translocating P-type atpase
JQM34_0001277	COG2226	methyltransferase
JQM34_0001278	COG0058	SHG alpha-glucan phosphorylase activity
JQM34_0001279	COG1640	4-alpha-glucanotransferase
JQM34_000128	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JQM34_0001280	COG2182	Extracellular solute-binding protein
JQM34_0001281	COG1175	transmembrane transport
JQM34_0001282	COG3833	ABC-type maltose transport systems, permease component
JQM34_0001283	COG5521	maltodextrose utilization protein MalA
JQM34_0001284	COG1609	Transcriptional regulator
JQM34_0001285	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JQM34_000129	COG0785	Cytochrome C biogenesis protein
JQM34_0001293	COG1476	TRANSCRIPTIONal
JQM34_0001295	COG2151	metal-sulfur cluster biosynthetic enzyme
JQM34_0001298	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JQM34_000130	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JQM34_0001307	COG5002	protein histidine kinase activity
JQM34_0001308	COG0745	RESPONSE REGULATOR receiver
JQM34_000131	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JQM34_000131	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JQM34_0001311	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JQM34_0001314	COG1309	transcriptional regulator
JQM34_000132	COG4753	response regulator
JQM34_000132	COG2207	Transcriptional regulator
JQM34_0001320	COG0110	maltose O-acetyltransferase activity
JQM34_0001321	COG0425	Belongs to the sulfur carrier protein TusA family
JQM34_0001321	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JQM34_0001322	COG0425	Belongs to the sulfur carrier protein TusA family
JQM34_0001322	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JQM34_0001323	COG1937	Protein conserved in bacteria
JQM34_000133	COG2972	Histidine kinase
JQM34_0001331	COG2514	catechol 2,3-dioxygenase activity
JQM34_0001333	COG3684	Belongs to the aldolase LacD family
JQM34_0001334	COG2222	sugar isomerase
JQM34_0001336	COG3716	PTS system mannose fructose sorbose family IID component
JQM34_0001337	COG3715	PTS system
JQM34_0001338	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JQM34_0001341	COG3064	Membrane
JQM34_0001341	COG3525	Glycosyl hydrolase, family 20, catalytic domain
JQM34_0001341	COG3583	domain protein
JQM34_0001342	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JQM34_0001344	COG0515	serine threonine protein kinase
JQM34_0001344	COG2815	serine threonine protein kinase
JQM34_0001347	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JQM34_0001348	COG0151	Belongs to the GarS family
JQM34_0001352	COG0138	bifunctional purine biosynthesis protein purh
JQM34_0001354	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JQM34_0001355	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JQM34_0001357	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JQM34_0001359	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JQM34_000136	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JQM34_0001360	COG2274	protein secretion by the type I secretion system
JQM34_0001366	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JQM34_0001369	COG0436	Aminotransferase
JQM34_0001370	COG2855	membrane
JQM34_0001371	COG1832	CoA-binding protein
JQM34_0001372	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JQM34_0001374	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JQM34_0001376	COG0756	dUTP diphosphatase activity
JQM34_000138	COG1940	carbohydrate kinase activity
JQM34_0001385	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JQM34_0001386	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JQM34_0001391	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JQM34_0001392	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JQM34_0001394	COG0012	GTP binding
JQM34_0001396	COG0592	DNA-directed DNA polymerase activity
JQM34_0001398	COG1475	DNA binding
JQM34_0001399	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JQM34_00014	COG1175	transmembrane transport
JQM34_0001408	COG1511	domain protein
JQM34_0001408	COG1511	domain protein
JQM34_0001410	COG0488	(ABC) transporter
JQM34_0001411	COG0180	Tryptophanyl-tRNA synthetase
JQM34_0001412	COG0516	GMP reductase activity
JQM34_0001412	COG0517	IMP dehydrogenase activity
JQM34_0001414	COG2501	S4 domain
JQM34_0001415	COG0612	Peptidase, M16
JQM34_0001416	COG0612	Peptidase, M16
JQM34_0001418	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JQM34_0001419	COG1122	ATPase activity
JQM34_000142	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JQM34_0001420	COG1122	ATPase activity
JQM34_0001422	COG1792	Involved in formation and maintenance of cell shape
JQM34_0001424	COG3942	CHAP domain
JQM34_0001429	COG1739	Uncharacterized protein family UPF0029
JQM34_0001430	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JQM34_0001431	COG1040	competence protein
JQM34_0001434	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JQM34_0001436	COG0305	Participates in initiation and elongation during chromosome replication
JQM34_0001438	COG3942	CHAP domain
JQM34_0001440	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JQM34_0001440	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JQM34_0001442	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JQM34_0001443	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JQM34_0001444	COG1116	anion transmembrane transporter activity
JQM34_0001446	COG4463	regulation of RNA biosynthetic process
JQM34_0001447	COG0542	response to heat
JQM34_0001449	COG3201	nicotinamide mononucleotide transporter
JQM34_000145	COG0300	oxidoreductase activity
JQM34_0001453	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JQM34_0001458	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JQM34_0001459	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JQM34_000146	COG3250	beta-galactosidase activity
JQM34_0001461	COG1696	Membrane protein involved in D-alanine export
JQM34_0001463	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JQM34_0001464	COG0737	Belongs to the 5'-nucleotidase family
JQM34_0001465	COG1846	Transcriptional regulator
JQM34_0001466	COG1121	(ABC) transporter
JQM34_0001467	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JQM34_0001468	COG0803	Belongs to the bacterial solute-binding protein 9 family
JQM34_0001468	COG3443	Belongs to the bacterial solute-binding protein 9 family
JQM34_0001470	COG3537	Alpha-1,2-mannosidase
JQM34_0001473	COG0383	alpha-mannosidase activity
JQM34_0001476	COG4209	transmembrane transport
JQM34_0001477	COG0395	ABC-type sugar transport system, permease component
JQM34_0001478	COG1653	transport
JQM34_0001487	COG2807	transmembrane transport
JQM34_0001488	COG1216	Glycosyl transferase, family 2
JQM34_000149	COG2226	methyltransferase
JQM34_0001490	COG0546	phosphoglycolate phosphatase activity
JQM34_0001491	COG1760	l-serine dehydratase
JQM34_0001492	COG1760	l-serine dehydratase
JQM34_0001493	COG1388	LysM domain
JQM34_0001493	COG3584	3D domain protein
JQM34_0001494	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JQM34_0001495	COG0137	argininosuccinate synthase activity
JQM34_0001498	COG0494	nUDIX hydrolase
JQM34_0001499	COG0494	nUDIX hydrolase
JQM34_00015	COG0395	ABC-type sugar transport system, permease component
JQM34_0001500	COG0445	tRNA wobble uridine modification
JQM34_0001506	COG1214	PFAM Peptidase M22, glycoprotease
JQM34_0001509	COG1396	sequence-specific DNA binding
JQM34_000151	COG1242	4 iron, 4 sulfur cluster binding
JQM34_0001515	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JQM34_0001516	COG1464	Belongs to the NlpA lipoprotein family
JQM34_0001517	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JQM34_0001518	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JQM34_000152	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JQM34_0001522	COG2972	Histidine kinase
JQM34_0001523	COG2207	Transcriptional regulator
JQM34_0001523	COG4753	response regulator
JQM34_0001525	COG1780	Probably involved in ribonucleotide reductase function
JQM34_0001529	COG1438	arginine binding
JQM34_0001534	COG1395	domain, Protein
JQM34_0001537	COG2818	Glycosylase
JQM34_000154	COG0025	NhaP-type Na H and K H
JQM34_0001544	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JQM34_0001545	COG0006	proline dipeptidase activity
JQM34_0001546	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JQM34_0001547	COG1393	Belongs to the ArsC family
JQM34_0001552	COG0285	dihydrofolate synthase activity
JQM34_0001554	COG1454	alcohol dehydrogenase
JQM34_0001556	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JQM34_0001557	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JQM34_0001559	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JQM34_0001560	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JQM34_0001563	COG1328	CTP reductase activity
JQM34_0001567	COG0602	queuosine metabolic process
JQM34_0001574	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JQM34_0001579	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JQM34_0001583	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JQM34_0001587	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JQM34_000159	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JQM34_0001591	COG0201	protein transport
JQM34_0001593	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JQM34_0001595	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JQM34_0001596	COG0202	RNA polymerase activity
JQM34_0001598	COG3830	Belongs to the UPF0237 family
JQM34_0001599	COG2848	UPF0210 protein
JQM34_00016	COG2731	YhcH YjgK YiaL family protein
JQM34_0001600	COG0588	phosphoglycerate mutase activity
JQM34_0001601	COG1178	ABC-type Fe3 transport system permease component
JQM34_0001602	COG3842	ATPase activity
JQM34_0001603	COG1840	ABC-type Fe3 transport system, periplasmic component
JQM34_0001607	COG1917	Cupin 2, conserved barrel domain protein
JQM34_0001607	COG4977	sequence-specific DNA binding
JQM34_0001611	COG2255	four-way junction helicase activity
JQM34_0001613	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JQM34_0001614	COG4589	Belongs to the CDS family
JQM34_0001615	COG0750	zinc metalloprotease
JQM34_0001617	COG2723	6-phospho-beta-galactosidase activity
JQM34_0001620	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JQM34_0001622	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
JQM34_0001626	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JQM34_0001627	COG0765	amino acid transport
JQM34_0001628	COG0765	amino acid transport
JQM34_0001629	COG1126	abc transporter atp-binding protein
JQM34_0001630	COG1523	belongs to the glycosyl hydrolase 13 family
JQM34_0001635	COG0802	atpase or kinase
JQM34_0001637	COG1316	TRANSCRIPTIONal
JQM34_0001642	COG0534	Mate efflux family protein
JQM34_0001644	COG0582	viral genome integration into host DNA
JQM34_0001647	COG1396	sequence-specific DNA binding
JQM34_000165	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JQM34_000167	COG0647	UMP catabolic process
JQM34_0001674	COG0582	viral genome integration into host DNA
JQM34_0001698	COG5263	repeat protein
JQM34_0001698	COG5632	N-Acetylmuramoyl-L-alanine amidase
JQM34_000170	COG1393	Belongs to the ArsC family
JQM34_0001707	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JQM34_0001709	COG1461	Dihydroxyacetone kinase
JQM34_0001714	COG1131	(ABC) transporter
JQM34_0001716	COG4585	Histidine kinase
JQM34_0001717	COG2197	response regulator
JQM34_000172	COG0483	inositol monophosphate 1-phosphatase activity
JQM34_0001721	COG0028	Belongs to the TPP enzyme family
JQM34_0001722	COG0440	acetolactate synthase activity
JQM34_0001724	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JQM34_0001727	COG1126	abc transporter atp-binding protein
JQM34_0001728	COG0765	amino acid transport
JQM34_000173	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JQM34_000173	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
JQM34_0001733	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JQM34_0001735	COG1882	Formate acetyltransferase
JQM34_000174	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JQM34_0001740	COG0366	Alpha amylase catalytic
JQM34_0001741	COG0366	Alpha amylase catalytic
JQM34_0001742	COG0386	Belongs to the glutathione peroxidase family
JQM34_0001747	COG4839	cell division protein FtsL
JQM34_0001748	COG0768	penicillin binding
JQM34_000175	COG0573	inorganic phosphate transmembrane transporter activity
JQM34_0001750	COG0366	Alpha amylase catalytic
JQM34_0001754	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JQM34_0001756	COG0517	IMP dehydrogenase activity
JQM34_000176	COG0581	inorganic phosphate transmembrane transporter activity
JQM34_0001760	COG1187	pseudouridine synthase activity
JQM34_0001762	COG4607	ABC-type enterochelin transport system periplasmic component
JQM34_0001763	COG4604	ABC transporter, ATP-binding protein
JQM34_0001764	COG4605	iron ion homeostasis
JQM34_0001765	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JQM34_0001766	COG1363	Peptidase, m42
JQM34_000177	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JQM34_0001770	COG0126	phosphoglycerate kinase activity
JQM34_0001773	COG0789	Transcriptional regulator
JQM34_0001774	COG0174	glutamine synthetase
JQM34_000178	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JQM34_0001784	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JQM34_0001786	COG0484	heat shock protein binding
JQM34_0001788	COG0537	adenosine 5'-monophosphoramidase activity
JQM34_0001789	COG1131	(ABC) transporter
JQM34_000179	COG0704	Plays a role in the regulation of phosphate uptake
JQM34_0001794	COG0195	Participates in both transcription termination and antitermination
JQM34_0001795	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JQM34_00018	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JQM34_000180	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JQM34_0001805	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JQM34_0001807	COG0525	valine-tRNA ligase activity
JQM34_000181	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JQM34_0001811	COG0504	CTP synthase activity
JQM34_0001813	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JQM34_0001814	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JQM34_0001815	COG4221	oxidoreductase activity
JQM34_000182	COG3527	Alpha-acetolactate decarboxylase
JQM34_0001823	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JQM34_0001848	COG2207	Transcriptional regulator
JQM34_0001849	COG3345	alpha-galactosidase
JQM34_000185	COG3842	ATPase activity
JQM34_0001850	COG1653	transport
JQM34_0001851	COG1175	transmembrane transport
JQM34_0001852	COG0395	ABC-type sugar transport system, permease component
JQM34_0001853	COG0366	Alpha amylase catalytic
JQM34_0001858	COG1174	glycine betaine transport
JQM34_0001860	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JQM34_0001862	COG1122	ATPase activity
JQM34_0001868	COG3201	nicotinamide mononucleotide transporter
JQM34_0001870	COG1309	transcriptional regulator
JQM34_0001871	COG1230	cation diffusion facilitator family transporter
JQM34_0001872	COG1609	Transcriptional regulator
JQM34_0001873	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JQM34_0001874	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JQM34_0001876	COG2233	PERMEase
JQM34_0001879	COG0708	Exodeoxyribonuclease III
JQM34_0001882	COG1132	(ABC) transporter
JQM34_0001883	COG1132	(ABC) transporter
JQM34_0001884	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JQM34_0001885	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JQM34_0001886	COG0133	tryptophan synthase activity
JQM34_0001887	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JQM34_0001888	COG0512	Glutamine amidotransferase of anthranilate synthase
JQM34_0001891	COG0135	phosphoribosylanthranilate isomerase activity
JQM34_0001895	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JQM34_000190	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JQM34_0001900	COG3237	CsbD-like
JQM34_0001904	COG2261	transglycosylase associated protein
JQM34_0001905	COG3711	transcriptional antiterminator
JQM34_0001908	COG0628	permease
JQM34_0001913	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JQM34_0001915	COG1051	belongs to the nudix hydrolase family
JQM34_0001917	COG2264	protein methyltransferase activity
JQM34_0001918	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JQM34_0001919	COG1164	Oligoendopeptidase f
JQM34_000192	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JQM34_0001927	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JQM34_0001930	COG0720	synthase
JQM34_0001932	COG3118	belongs to the thioredoxin family
JQM34_0001935	COG1380	Effector of murein hydrolase LrgA
JQM34_0001936	COG1346	cytolysis
JQM34_0001938	COG1395	domain, Protein
JQM34_0001941	COG1131	(ABC) transporter
JQM34_0001942	COG1725	Transcriptional regulator
JQM34_0001945	COG1484	DNA-dependent DNA replication
JQM34_0001949	COG3345	alpha-galactosidase
JQM34_0001950	COG3345	alpha-galactosidase
JQM34_0001951	COG3345	alpha-galactosidase
JQM34_0001952	COG3345	alpha-galactosidase
JQM34_0001954	COG2207	Transcriptional regulator
JQM34_000197	COG0287	Prephenate dehydrogenase
JQM34_0001979	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JQM34_000198	COG3679	Belongs to the UPF0342 family
JQM34_0001980	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JQM34_0001981	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JQM34_00020	COG2226	methyltransferase
JQM34_000201	COG0077	Prephenate dehydratase
JQM34_000211	COG3475	LICD family
JQM34_000212	COG1442	glycosyl transferase family 8
JQM34_000212	COG1216	Glycosyl transferase, family 2
JQM34_000213	COG3475	LICD family
JQM34_000221	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JQM34_000221	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JQM34_000222	COG1132	(ABC) transporter
JQM34_000224	COG0402	S-adenosylhomocysteine deaminase activity
JQM34_000225	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JQM34_000226	COG0222	ribosome binding
JQM34_000227	COG5504	Zn-dependent protease
JQM34_00023	COG0768	penicillin binding
JQM34_000230	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JQM34_000231	COG0167	dihydroorotate dehydrogenase activity
JQM34_000233	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JQM34_000234	COG4470	Protein conserved in bacteria
JQM34_000235	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JQM34_000237	COG0488	(ABC) transporter
JQM34_000239	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JQM34_000246	COG1328	CTP reductase activity
JQM34_000246	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JQM34_000248	COG4443	Transcriptional Coactivator p15 (PC4)
JQM34_000250	COG1268	BioY protein
JQM34_000251	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JQM34_000252	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JQM34_000253	COG1136	(ABC) transporter
JQM34_000254	COG0577	efflux transmembrane transporter activity
JQM34_000255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JQM34_000255	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JQM34_000256	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JQM34_00026	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JQM34_000260	COG2813	Specifically methylates the guanine in position
JQM34_000261	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JQM34_000263	COG0295	cytidine deaminase activity
JQM34_000264	COG1744	ABC transporter substrate-binding protein PnrA-like
JQM34_000265	COG3845	ABC transporter
JQM34_000266	COG4603	Belongs to the binding-protein-dependent transport system permease family
JQM34_000267	COG1079	Belongs to the binding-protein-dependent transport system permease family
JQM34_000269	COG0187	DNA topoisomerase II activity
JQM34_00027	COG1051	belongs to the nudix hydrolase family
JQM34_000275	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JQM34_000276	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JQM34_000280	COG0539	negative regulation of cytoplasmic translation
JQM34_000281	COG1956	GAF domain-containing protein
JQM34_000282	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JQM34_000285	COG0719	Fe-S assembly protein
JQM34_000286	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JQM34_000288	COG0719	Fe-S assembly protein
JQM34_000290	COG0531	amino acid
JQM34_000291	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JQM34_000292	COG1307	EDD domain protein, DegV family
JQM34_000294	COG0039	L-malate dehydrogenase activity
JQM34_000295	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JQM34_000296	COG3764	Sortase (surface protein transpeptidase)
JQM34_000300	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JQM34_000305	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JQM34_000306	COG1438	arginine binding
JQM34_000307	COG0497	DNA recombination
JQM34_000308	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JQM34_00031	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JQM34_000311	COG0758	DNA mediated transformation
JQM34_000312	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JQM34_000313	COG2832	Protein of unknown function (DUF454)
JQM34_000314	COG3142	Participates in the control of copper homeostasis
JQM34_000317	COG0473	3-isopropylmalate dehydrogenase activity
JQM34_000320	COG0066	3-isopropylmalate dehydratase activity
JQM34_000322	COG1401	restriction endodeoxyribonuclease activity
JQM34_000326	COG0571	ribonuclease III activity
JQM34_000327	COG1196	nuclear chromosome segregation
JQM34_000328	COG0196	riboflavin kinase activity
JQM34_000329	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JQM34_000335	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
JQM34_000336	COG3541	Predicted nucleotidyltransferase
JQM34_000339	COG3689	TIGRFAM TIGR03943 family protein
JQM34_000340	COG0701	Predicted permease
JQM34_000342	COG2183	response to ionizing radiation
JQM34_000346	COG1136	(ABC) transporter
JQM34_000347	COG0577	efflux transmembrane transporter activity
JQM34_000349	COG0561	phosphatase activity
JQM34_00035	COG3599	regulation of cell shape
JQM34_000350	COG0561	phosphatase activity
JQM34_000351	COG0552	protein localization to endoplasmic reticulum
JQM34_000352	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JQM34_000353	COG1126	abc transporter atp-binding protein
JQM34_000354	COG0765	amino acid transport
JQM34_00036	COG3599	regulation of cell shape
JQM34_000361	COG1827	regulation of RNA biosynthetic process
JQM34_000362	COG2816	NAD+ diphosphatase activity
JQM34_000364	COG4684	Psort location CytoplasmicMembrane, score
JQM34_000365	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JQM34_000366	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JQM34_00037	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JQM34_000371	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JQM34_000376	COG1104	cysteine desulfurase activity
JQM34_000377	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JQM34_000379	COG2357	RelA SpoT domain protein
JQM34_000381	COG0564	pseudouridine synthase activity
JQM34_000382	COG0280	phosphate acetyltransferase
JQM34_000383	COG1194	a g-specific adenine glycosylase
JQM34_000384	COG0745	RESPONSE REGULATOR receiver
JQM34_000386	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JQM34_000387	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JQM34_00039	COG3583	domain protein
JQM34_00039	COG3583	domain protein
JQM34_000391	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JQM34_000393	COG0488	(ABC) transporter
JQM34_000397	COG1523	belongs to the glycosyl hydrolase 13 family
JQM34_000399	COG1012	belongs to the aldehyde dehydrogenase family
JQM34_00040	COG3583	domain protein
JQM34_000401	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JQM34_000403	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JQM34_000405	COG0560	Phosphoserine phosphatase
JQM34_00041	COG3583	domain protein
JQM34_000410	COG2207	Transcriptional regulator
JQM34_000410	COG3708	Transcriptional regulator
JQM34_000417	COG1011	Hydrolase
JQM34_000420	COG1051	belongs to the nudix hydrolase family
JQM34_000421	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JQM34_000422	COG0534	Mate efflux family protein
JQM34_000423	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JQM34_000424	COG0022	dehydrogenase e1 component
JQM34_000425	COG0508	dehydrogenase complex catalyzes the overall conversion of
JQM34_000426	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JQM34_000427	COG0095	Lipoate-protein ligase
JQM34_00043	COG3583	domain protein
JQM34_00043	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JQM34_000440	COG0038	chloride channel
JQM34_000442	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JQM34_000448	COG1673	EVE domain
JQM34_000450	COG0561	phosphatase activity
JQM34_000451	COG1131	(ABC) transporter
JQM34_000453	COG2205	protein histidine kinase activity
JQM34_000454	COG0745	RESPONSE REGULATOR receiver
JQM34_000456	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JQM34_000460	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JQM34_000461	COG1982	Orn Lys Arg decarboxylase major
JQM34_000466	COG0366	Alpha amylase catalytic
JQM34_000467	COG0135	phosphoribosylanthranilate isomerase activity
JQM34_000468	COG1597	lipid kinase activity
JQM34_00049	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JQM34_0005	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JQM34_000505	COG1674	ftsk spoiiie
JQM34_000506	COG4499	WXG100 protein secretion system (Wss), protein YukC
JQM34_000510	COG4842	Belongs to the WXG100 family
JQM34_000511	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JQM34_000513	COG0741	lytic transglycosylase activity
JQM34_000518	COG2890	protein-(glutamine-N5) methyltransferase activity
JQM34_000520	COG1435	thymidine kinase activity
JQM34_000521	COG1942	4-Oxalocrotonate Tautomerase
JQM34_000522	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JQM34_000524	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JQM34_000526	COG4708	membrane
JQM34_000527	COG2246	polysaccharide biosynthetic process
JQM34_000528	COG1970	mechanosensitive ion channel activity
JQM34_00053	COG0204	Acyl-transferase
JQM34_000531	COG4509	Sortase family
JQM34_000533	COG0681	Belongs to the peptidase S26 family
JQM34_000535	COG2195	Cleaves the N-terminal amino acid of tripeptides
JQM34_000537	COG0803	Belongs to the bacterial solute-binding protein 9 family
JQM34_000537	COG3443	Belongs to the bacterial solute-binding protein 9 family
JQM34_00054	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JQM34_000540	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JQM34_000541	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JQM34_000542	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JQM34_000543	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JQM34_000545	COG2723	6-phospho-beta-galactosidase activity
JQM34_000548	COG3711	transcriptional antiterminator
JQM34_000549	COG3684	Belongs to the aldolase LacD family
JQM34_00055	COG2384	SAM-dependent methyltransferase
JQM34_000554	COG3775	system Galactitol-specific IIC component
JQM34_000557	COG4750	Nucleotidyl transferase
JQM34_00056	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JQM34_000560	COG1063	alcohol dehydrogenase
JQM34_000563	COG0584	glycerophosphoryl diester phosphodiesterase
JQM34_000564	COG2176	DNA-directed DNA polymerase activity
JQM34_000568	COG0494	nUDIX hydrolase
JQM34_000569	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JQM34_00057	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JQM34_000572	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JQM34_000577	COG1126	abc transporter atp-binding protein
JQM34_00058	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JQM34_000581	COG0628	permease
JQM34_000582	COG2706	6-phosphogluconolactonase activity
JQM34_00059	COG0463	Glycosyl transferase, family 2
JQM34_000591	COG0826	peptidase U32
JQM34_000592	COG2188	Transcriptional regulator
JQM34_000594	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JQM34_000597	COG0628	permease
JQM34_000598	COG1686	Belongs to the peptidase S11 family
JQM34_000599	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JQM34_0006	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JQM34_000600	COG0785	Cytochrome C biogenesis protein
JQM34_000601	COG0024	Methionine aminopeptidase
JQM34_000602	COG4109	DRTGG domain
JQM34_000604	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JQM34_000605	COG0469	pyruvate kinase activity
JQM34_000608	COG2936	dipeptidyl-peptidase activity
JQM34_000609	COG1438	arginine binding
JQM34_000614	COG0438	transferase activity, transferring glycosyl groups
JQM34_000615	COG0438	transferase activity, transferring glycosyl groups
JQM34_000616	COG2151	metal-sulfur cluster biosynthetic enzyme
JQM34_000617	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JQM34_000618	COG0358	DNA primase activity
JQM34_00062	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JQM34_000622	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JQM34_000623	COG0772	Belongs to the SEDS family
JQM34_000625	COG4122	O-methyltransferase activity
JQM34_000629	COG3615	Tellurite resistance protein tehB
JQM34_000629	COG0500	methyltransferase
JQM34_000631	COG0557	exoribonuclease II activity
JQM34_000633	COG2814	Major facilitator Superfamily
JQM34_000634	COG0237	dephospho-CoA kinase activity
JQM34_000635	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JQM34_000637	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JQM34_000639	COG1293	RNA-binding protein homologous to eukaryotic snRNP
JQM34_000641	COG0813	purine-nucleoside phosphorylase activity
JQM34_000643	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JQM34_000648	COG1136	(ABC) transporter
JQM34_000651	COG5002	protein histidine kinase activity
JQM34_000652	COG0745	RESPONSE REGULATOR receiver
JQM34_000658	COG1028	Short-chain dehydrogenase reductase Sdr
JQM34_00066	COG0251	oxidation-reduction process
JQM34_000660	COG4989	oxidoreductase activity
JQM34_000662	COG5263	repeat protein
JQM34_000662	COG4193	domain, Protein
JQM34_000663	COG0167	dihydroorotate dehydrogenase activity
JQM34_000664	COG0543	2 iron, 2 sulfur cluster binding
JQM34_000667	COG0443	Heat shock 70 kDa protein
JQM34_000668	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JQM34_000669	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JQM34_000671	COG2333	competence protein COMEC
JQM34_000671	COG0658	competence protein
JQM34_000672	COG1596	polysaccharide export
JQM34_000672	COG1555	photosystem II stabilization
JQM34_000674	COG0686	Belongs to the AlaDH PNT family
JQM34_000675	COG1702	phosphate starvation-inducible protein PhoH
JQM34_000677	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JQM34_000677	COG0456	acetyltransferase
JQM34_000678	COG2996	Protein conserved in bacteria
JQM34_00068	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JQM34_000680	COG0528	UMP kinase activity
JQM34_000685	COG0470	DNA polymerase III
JQM34_000687	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JQM34_000690	COG0564	pseudouridine synthase activity
JQM34_000691	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JQM34_000692	COG0583	DNA-binding transcription factor activity
JQM34_000698	COG0513	Belongs to the DEAD box helicase family
JQM34_00070	COG0492	ferredoxin-NADP+ reductase activity
JQM34_000700	COG1078	dGTPase activity
JQM34_00071	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JQM34_000715	COG1518	maintenance of DNA repeat elements
JQM34_000719	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JQM34_000720	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JQM34_000721	COG0077	Prephenate dehydratase
JQM34_000721	COG1605	Chorismate mutase
JQM34_000722	COG0716	FMN binding
JQM34_000723	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JQM34_000728	COG0505	Belongs to the CarA family
JQM34_000731	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JQM34_000734	COG0488	(ABC) transporter
JQM34_000735	COG1266	CAAX protease self-immunity
JQM34_000737	COG1704	LemA family
JQM34_000740	COG0697	spore germination
JQM34_000743	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JQM34_000748	COG1104	cysteine desulfurase activity
JQM34_00075	COG1307	EDD domain protein, DegV family
JQM34_000750	COG1674	ftsk spoiiie
JQM34_000750	COG0697	spore germination
JQM34_000751	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JQM34_000751	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JQM34_000751	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JQM34_000752	COG1105	Belongs to the carbohydrate kinase PfkB family
JQM34_000753	COG1349	DNA-binding transcription factor activity
JQM34_000758	COG0561	phosphatase activity
JQM34_000762	COG0492	ferredoxin-NADP+ reductase activity
JQM34_000764	COG1126	abc transporter atp-binding protein
JQM34_000766	COG1393	Belongs to the ArsC family
JQM34_00077	COG0617	tRNA 3'-terminal CCA addition
JQM34_000770	COG1272	protein, Hemolysin III
JQM34_000776	COG0431	NADPH-dependent FMN reductase
JQM34_000776	COG1053	succinate dehydrogenase
JQM34_000776	COG3976	FMN-binding domain protein
JQM34_00078	COG0488	(ABC) transporter
JQM34_000782	COG0656	L-ascorbic acid biosynthetic process
JQM34_000783	COG0726	polysaccharide deacetylase
JQM34_000785	COG0187	DNA topoisomerase II activity
JQM34_000787	COG5263	repeat protein
JQM34_000787	COG0366	Alpha amylase catalytic
JQM34_000788	COG1396	sequence-specific DNA binding
JQM34_000790	COG0772	Belongs to the SEDS family
JQM34_000791	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JQM34_000791	COG1199	ATP-dependent helicase activity
JQM34_000793	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JQM34_000794	COG3250	beta-galactosidase activity
JQM34_000796	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JQM34_000798	COG1126	abc transporter atp-binding protein
JQM34_000799	COG0765	amino acid transport
JQM34_00080	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JQM34_000800	COG4703	Protein of unknown function (DUF1797)
JQM34_000801	COG0542	response to heat
JQM34_000805	COG0513	Belongs to the DEAD box helicase family
JQM34_000807	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JQM34_000807	COG1263	PTS System
JQM34_000807	COG2190	(PTS) system
JQM34_000808	COG2177	Part of the ABC transporter FtsEX involved in
JQM34_000809	COG2884	Cell division ATP-binding protein ftsE
JQM34_000810	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JQM34_000811	COG0617	tRNA 3'-terminal CCA addition
JQM34_000811	COG0517	IMP dehydrogenase activity
JQM34_000811	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JQM34_000818	COG0740	serine-type endopeptidase activity
JQM34_000819	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JQM34_00082	COG0242	peptide deformylase activity
JQM34_000820	COG2131	deaminase
JQM34_000822	COG1307	EDD domain protein, DegV family
JQM34_000823	COG2081	HI0933 family
JQM34_000826	COG0789	Transcriptional regulator
JQM34_000827	COG0733	neurotransmitter:sodium symporter activity
JQM34_000828	COG1482	cell wall glycoprotein biosynthetic process
JQM34_000829	COG2723	6-phospho-beta-galactosidase activity
JQM34_000833	COG0028	Belongs to the TPP enzyme family
JQM34_000835	COG2217	Heavy metal translocating P-type atpase
JQM34_000839	COG0352	thiamine-phosphate diphosphorylase activity
JQM34_000842	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JQM34_000844	COG4172	Belongs to the ABC transporter superfamily
JQM34_000847	COG1304	FMN binding
JQM34_000849	COG0765	amino acid transport
JQM34_00085	COG3022	response to hydroperoxide
JQM34_000850	COG1126	abc transporter atp-binding protein
JQM34_000851	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JQM34_000854	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JQM34_000858	COG1217	gtp-binding protein TYPA
JQM34_000859	COG1187	pseudouridine synthase activity
JQM34_000863	COG0583	DNA-binding transcription factor activity
JQM34_000864	COG2247	cell wall binding repeat
JQM34_000864	COG0860	N-Acetylmuramoyl-L-alanine amidase
JQM34_00087	COG1846	Transcriptional regulator
JQM34_000870	COG4555	ABC transporter
JQM34_000871	COG2020	methyltransferase activity
JQM34_000872	COG0191	fructose-bisphosphate aldolase activity
JQM34_000873	COG5002	protein histidine kinase activity
JQM34_000874	COG0745	RESPONSE REGULATOR receiver
JQM34_000875	COG0577	efflux transmembrane transporter activity
JQM34_000876	COG1136	(ABC) transporter
JQM34_000877	COG0577	efflux transmembrane transporter activity
JQM34_000879	COG1335	isochorismatase
JQM34_000880	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
JQM34_000881	COG0513	Belongs to the DEAD box helicase family
JQM34_000882	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JQM34_000883	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JQM34_000884	COG3442	glutamine amidotransferase
JQM34_000885	COG0006	proline dipeptidase activity
JQM34_000886	COG4720	Psort location CytoplasmicMembrane, score
JQM34_000887	COG0351	phosphomethylpyrimidine kinase
JQM34_00089	COG0436	Aminotransferase
JQM34_000891	COG2824	Alkylphosphonate utilization operon protein PhnA
JQM34_000894	COG3935	DnaD domain protein
JQM34_000896	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JQM34_0009	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JQM34_00090	COG0017	Asparaginyl-tRNA synthetase
JQM34_000901	COG1363	Peptidase, m42
JQM34_000902	COG4808	Protein conserved in bacteria
JQM34_000904	COG1114	Component of the transport system for branched-chain amino acids
JQM34_000906	COG1573	uracil-dna glycosylase
JQM34_00091	COG0360	Binds together with S18 to 16S ribosomal RNA
JQM34_000915	COG3942	CHAP domain
JQM34_000916	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JQM34_000916	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JQM34_000918	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JQM34_000919	COG0765	amino acid transport
JQM34_00092	COG0629	single-stranded DNA binding
JQM34_000920	COG0765	amino acid transport
JQM34_000923	COG1959	2 iron, 2 sulfur cluster binding
JQM34_000928	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JQM34_00093	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JQM34_000932	COG0745	RESPONSE REGULATOR receiver
JQM34_000937	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JQM34_000939	COG3590	peptidase
JQM34_000943	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JQM34_000948	COG3842	ATPase activity
JQM34_00095	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JQM34_000950	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JQM34_000951	COG0215	cysteine-tRNA ligase activity
JQM34_000955	COG1045	serine acetyltransferase
JQM34_000958	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JQM34_000959	COG3620	sequence-specific DNA binding
JQM34_000960	COG4679	PFAM Phage derived protein Gp49-like (DUF891)
JQM34_000968	COG2189	Belongs to the N(4) N(6)-methyltransferase family
JQM34_000969	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JQM34_00097	COG1215	transferase activity, transferring glycosyl groups
JQM34_000975	COG1940	carbohydrate kinase activity
JQM34_000976	COG2190	(PTS) system
JQM34_000976	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JQM34_000976	COG1263	PTS System
JQM34_000977	COG1621	beta-fructofuranosidase activity
JQM34_000978	COG1609	Transcriptional regulator
JQM34_00098	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JQM34_000980	COG3425	synthase
JQM34_000983	COG0515	serine threonine protein kinase
JQM34_000983	COG2815	serine threonine protein kinase
JQM34_000984	COG0631	protein serine/threonine phosphatase activity
JQM34_000985	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JQM34_000985	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JQM34_000987	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JQM34_000989	COG0194	GDP metabolic process
JQM34_000998	COG2226	methyltransferase