LOCUS KT337363 6145 bp DNA linear PHG 01-MAR-2016 DEFINITION Streptococcus phage phiARI0639, partial genome. ACCESSION KT337363 VERSION KT337363.1 KEYWORDS . SOURCE Streptococcus phage phiARI0639 ORGANISM Streptococcus phage phiARI0639 Viruses; unclassified bacterial viruses. REFERENCE 1 (bases 1 to 6145) AUTHORS Croucher,N.J., Mostowy,R., Wymant,C., Turner,P., Bentley,S.D. and Fraser,C. TITLE Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic Conflict JOURNAL PLoS Biol. 14 (3), E1002394 (2016) PUBMED 26934590 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6145) AUTHORS Croucher,N.J. TITLE Direct Submission JOURNAL Submitted (23-JUL-2015) Department of Infectious Disease Epidemiology, Imperial College London, Norfolk Place, St. Mary's Campus, London, England W2 1PG, UK FEATURES Location/Qualifiers source 1..6145 /organism="Streptococcus phage phiARI0639" /proviral /mol_type="genomic DNA" /host="Streptococcus pneumoniae 09B10381" /db_xref="taxon:1701835" gene complement(114..1070) /locus_tag="phiARI0639_1" CDS complement(114..1070) /locus_tag="phiARI0639_1" /codon_start=1 /transl_table=11 /product="amidase_2 domain protein" /protein_id="ALH47234.1" /translation="MDIDRNRLRTGLPQVGVQPYRQVHAHSTGIRNSTVQNEADYHWR KDPELGFFSHVVGNGRIMQVGPVNNGSWDVGGGWNAETYAAVELIESHSTKEEFMADY RLYIELLRNLADEAGLPKTLDTDDLAGIKTHEYCTNNQPNNHSDHVDPYPYLAKWGIS REQFKQDIENGLSAATGWQKNGTGYWYVHSDGFYPKDKFEKINGTWYYFDGSGYMLSD RWKKHTDGNWYWFDNSGEMATGWKKIADKWYYFDVEGAMKTGWVKYKDTWYYLDAKEG AMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK" gene complement(1074..1406) /locus_tag="phiARI0639_2" CDS complement(1074..1406) /locus_tag="phiARI0639_2" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ALH47235.1" /translation="MQQITEIIIAFATSFLTVAVGGIVKAVKDYLLRKGGEKAVIIAE ILAKNAVNAVEQVAAETGYKGDEKLAQARAKVRAELTKYNISMTDKDLDTFVESAVKQ MNDAWKGR" gene complement(1410..1826) /locus_tag="phiARI0639_3" CDS complement(1410..1826) /locus_tag="phiARI0639_3" /codon_start=1 /transl_table=11 /product="holin_4 domain protein" /protein_id="ALH47236.1" /translation="MKIEFFNFLRSVVQTEDGLVLYALTLIVSMEIIDFVTGTIAAII NPDIEYKSKIGINGLLRKISGVLLLMILIPASVLLPEKTGFVFLHSIYLGYIAFTFQS LIENYRKLKGNVTLFQPIVKVFQRLLEKDDDTKKGE" gene complement(1836..2099) /locus_tag="phiARI0639_4" CDS complement(1836..2099) /locus_tag="phiARI0639_4" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="ALH47237.1" /translation="MLKVTKTRQLVTEFFAQDGDQQKLVKTTVINTDNKAVSTISETL HDPELYANNRISMRKHEQELREMRYKIEDAILAELEADAEHKE" gene complement(2159..4207) /locus_tag="phiARI0639_5" CDS complement(2159..4207) /locus_tag="phiARI0639_5" /codon_start=1 /transl_table=11 /product="DUF859 domain protein" /protein_id="ALH47238.1" /translation="MTKFINSSGSLHLNIYIEQVSQDIANNSSRVSWKATVDRDGAYR TYTYGNISNLSVWLNGSSVHSSHPNFDTSGQEFTLASGEVTIPHSGDGTKTFAVWASF DPNNGVHGNITVSANYTLSSIPRSSSVSDNALSGNRRLGSPHTLTIDRKSSSFTHQVW YRVFGSNWIDLGKNHATGVSFVPNIDLARYNTKAKSGTMDICVRTYNGTTQVGNDVYS NGWYFEIPESVKPTFSGITLTDMNTVARQLLSGNNFLQIISDIQVNFNNPSGAYGSTI TGYRAEIVNKNQITTVNGGRLGMMNFNGSATIRASVVDSRGRQSDTRDITINVIEYFA PAFSFTAFRTRETPNIIQVVRNAKIAPITLSGSQKNVMTLSFKVARLGSTTFTADHGR ASGIWTTQHTLNNSAANMAGNYVATKSFVVIGTLSDKFTSTEFTATVATESVVMSYDK DGRVGIGKVAEQGGAGSLDVLGDIYARNKPIQQYQLTNRDGSAINDFTNNFDVHDKSG YYHKSANSPNNPSKTWGLLHVIGGGAHLVQYFAERDGRRRLFIRAKTNGNWTPWVEYA RKEDVLLKSDSTPTPWQNAILQNGWNHHRDYGGVQFSKTFDGVVCFKGTCKGGKIARE SIILTLPEHFRPSTTLFKTALNNDYGSAVIGIYPNGNVVVKSNVDATWLNFDNVFFKI " gene complement(4218..>6145) /locus_tag="phiARI0639_6" CDS complement(4218..>6145) /locus_tag="phiARI0639_6" /codon_start=3 /transl_table=11 /product="putative antireceptor protein" /protein_id="ALH47239.1" /translation="DSRNPADYRWTRWKGRDGANGVAGRAGADGRTPYLHIAYATSNN GSQGFSTTDSTNKTYIGTYTDYTQADSTDYRVYKWTLIKGADGTGISNVTNYYLATTV STGITRTSAGWTTTPQPITSDKRYLWNYRVELYTNGTSKTTEPTVIGVHGEKGERGLQ GLQGLQGARGEQGIPGPRGADGRTQYTHMAYADNATGGGFSQTNTDKAFVGVYIDFNP TDSRNPADYRWTRWKGRDGANGVAGKAGADGRTSYFHIAYAASADGSREFSLEDNRQQ YMGYYSDFTAADSRDRTKYKWFDRLANVQVGSQNLLRNTATLPIKNGLDGTWRSTSGG NGVAEPVTLDKYPVPGILKGVRVKNNTNGGNKDLSQIINLVIGQRYTISCWARVSSTS DRSTVNLLVRSWTVNDTNRILFKAISNKTWVKYSLSFTADAEKNSIQFGQNGPGNIEI CGMKLELGNVATDWSLSVEDIQSQLDGKADQKLTQQQLTALTEKAQLHDAELKAKATM EQLSDLEKAYNAFVKSNADSRKKSESDLVEAGRRIDLLTTQFGGLAELKTFIDTYMKS TNEGLIIGKNDASSTIKVSSDRISMFSAGKEVMYISQGVINIDNGIFTASIQIGRFRT EQYHLNKDVNVIRYIGG" ORIGIN 1 attttacaga gatttacgac acttttgccc cttttttgcc ccttttgagc aaacaaaaaa 61 accgcaagcc tgagcctgcg gtgaaagaac aatttagaaa gtttcctttc tatttattta 121 actgtaatca agccatctgg ctctactgtg aactctggct tgtctgccag tgttccgtct 181 ggtttgaggt agtaccagcc tgttccgtcc gctgactgga taaaggcatt tgataccatg 241 gcgccttctt tagcgtctaa gtagtaccag gtgtccttgt acttgaccca gcctgtcttc 301 atggcacctt ctacatcaaa atagtaccac ttatcagcga ttttcttcca gcctgtagcc 361 atttcgcctg agttgtcgaa ccagtaccaa ttaccgtctg tgtgcttctt ccagcggtct 421 gaaagcatat agcctgagcc atcgaaataa taccaggtac cgttgatttt ctcaaactta 481 tcttttggat aaaagccgtc tgagtgtacg taccagtagc cagtgccatt tttctgccag 541 cctgttgcag cgctcaagcc gttttcgatg tcttgcttaa actgttcacg gctaatgccc 601 catttagcaa gatatggata tggatccaca tggtctgagt ggttgtttgg ttggttattg 661 gtacagtatt catgcgtctt gatacctgcc aagtcgtctg tatcaagagt cttcggcaag 721 cctgcttcgt ccgctagatt gcgtagcaat tcgatataga ggcgatagtc agccataaac 781 tcttccttag ttgaatggct ttcaatcagt tcaaccgctg cataggtctc agcattccaa 841 ccgcccccaa catcccaact tccgttgttc acaggtccta cctgcatgat gcgaccgttc 901 ccaacaacgt gcgagaaaaa acctaattct gggtctttcc gccagtgata atccgcttca 961 ttctgtacgg ttgagttgcg gatacctgtt gaatgagcat gtacttgtcg ataaggctgc 1021 accccaacct ggggcaagcc tgtacgtagt ctgtttctat cgatatccat tccctatcgt 1081 cctttccatg cgtcattcat ctgcttcact gctgactcta cgaaggtgtc taagtctttg 1141 tcagtcatgc taatattgta ttttgtaagc tcagcacgga ctttagcgcg agcctgtgcc 1201 agtttttcat ctcccttgta gccagtttca gcagctacct gctccacggc atttactgca 1261 tttttagcta gaatttcagc gatgatcacc gctttctctc cgcctttacg caaaagataa 1321 tcttttactg cttttacaat accgcctact gctactgtta aaaagcttgt cgcaaaagca 1381 atgatgattt cagtaatttg ctgcatttgt tattctcctt ttttcgtgtc atcatctttt 1441 tcaagtaatc gctgaaatac ttttacaatc ggctgaaaaa gagtaacatt tccttttaat 1501 ttgcgataat tttcaatgag agattgaaaa gtaaatgcga tgtacccgag atagattgag 1561 tgcaagaata caaaacctgt cttttcaggc aacaaaacgg acgccggaat gaggatcatc 1621 agtaagagaa cccctgaaat cttacgaagg agcccgttaa tgccgatttt gctcttgtac 1681 tcgatgtcag gattgataat cgccgcaatc gtccctgtca caaaatcaat gatttccatt 1741 gagacaatca gtgttagagc gtacaagacc aaaccatctt cagtctgtac gacacttctt 1801 agaaaattga aaaattcaat tttcatacac acctcctatt ccttatgctc agcatctgct 1861 tccagctctg ccaaaatggc atcttcaatc ttatagcgca tttctcgtaa ctcttgctca 1921 tgcttacgca tactgatacg attgttagcg tacagttccg ggtcatgcag cgtttcagat 1981 attgttgaaa cagctttatt gtctgtgttg attacagtag ttttgaccaa tttttgttgg 2041 tcgccatctt gtgcgaaaaa ttcagttact agctgacgtg ttttagtgac ttttaacatt 2101 gtcatttcct cctttataaa ttaattatcc cttaataatt agggattttt tacggttgtt 2161 atattttgaa aaacacatta tcaaaattaa gccaagtagc atctacatta gatttgacaa 2221 ctacgtttcc atttggataa attcctataa cggctgaacc gtaatcatta ttcaaagcag 2281 ttttgaataa tgttgtagat ggtctgaaat gttcaggtaa agtaagtatg attgactcac 2341 gtgcaatctt tccgccctta catgttcctt taaaacaaac aacaccatcg aatgtttttg 2401 aaaattggac acctccgtaa tccctgtgat gattccatcc attttgtaaa atggcatttt 2461 gccaaggagt cggagtgcta tctgatttta acaaaacatc ttcttttcta gcatattcaa 2521 cccacggtgt ccaatttcca ttagtttttg cacgaataaa taaccggcga cgtccatcac 2581 gctcagcaaa atattgaaca agatgcgctc ctccaccgat tacatgaagc aatccccatg 2641 ttttagaggg attatttggt gaatttgctg atttgtgata atagccagat ttatcatgta 2701 catcaaaatt atttgtaaaa tcgttaatgg cactgccatc ccgatttgtt aattgatatt 2761 gctgaatagg tttatttcta gcgtagatat ctcccaagac atccaatgac cctgcaccac 2821 cttgctctgc aactttacca atgcccacac ggccatcttt gtcataactc attaccacac 2881 tttcagttgc aactgttgct gtaaattctg tgcttgtaaa cttatcagat agagttccta 2941 tgaccacaaa tgatttggtt gcaacataat tacctgccat gttagcagct gaattattta 3001 aggtgtgttg agttgtccaa ataccagaag ctctaccatg atcagctgta aaagttgtac 3061 tacctaatcg agctactttg aatgatagtg tcatgacatt tttttgacta cctgataaag 3121 tgataggagc gattttagca ttcctgacaa cttgaataat gttaggtgtt tcccgcgtcc 3181 taaaagctgt aaaactaaaa gctggtgcaa aatattcaat aacattgatt gtaatatctc 3241 tagtatctga ttgcctgcct cggctatcaa ccacactagc tcgaatcgtt gctgaaccat 3301 tgaaattcat cataccaagc ctaccaccgt ttacagttgt aatctgattc ttgtttacga 3361 tttcagcacg atatcctgtg atagtcgaac cataagcccc ggatggatta ttaaagttga 3421 cctgaatatc agaaataatc tgtaaaaagt tatttccact caatagctgc ctagcaacag 3481 tattcatatc agtcaatgta attccagaaa atgtaggttt tacgctttcc ggaatttcaa 3541 aataccaccc atttgagtaa acgtcatttc caacttgagt agttccatta tatgttcgaa 3601 cacatatgtc catcgtgcca gactttgctt ttgtgttgta tctagctagg tcaatattag 3661 gtacgaaaga aacgcctgtt gcgtgatttt ttcctaaatc aatccagttg ctaccaaaca 3721 ctctatacca tacttggtga gtaaatgagc tagatttgcg atcaatagtg agagtgtgag 3781 gacttccgag ccgcctattt cctgaaagag cattgtcgct tacactacta gatcgaggaa 3841 tgcttgaaag agtatagttt gctgatacgg taatgtttcc atgtactccg ttgtttgggt 3901 caaacgatgc ccatactgca aaagtcttag ttccgtcacc actgtgtggg atggttactt 3961 ccccacttgc taaagtaaac tcttgcccgg atgtgtcaaa gtttggatga ctactatgca 4021 cacttgaccc atttaaccat acagacaagt tactaatatt accataagta tatgtgcggt 4081 aagctccatc acggtcaaca gtagctttcc aactaactct tgaggaattg ttagcgatat 4141 cttgactaac ttgttcgatg taaatattca agtgtagtga accgctagaa ttgataaatt 4201 tagtcatttc cctcttttta acctcctata tatcgtatga cattcacatc tttgttaaga 4261 tgatactgtt ctgttctaaa acgtccaatt tgaattgatg cagtaaaaat accattatca 4321 atatttatta caccttgcga aatgtacata acttccttac ctgcagaaaa catggatatt 4381 ctatcacttg ataccttaat agtagagctt gcatcattct tacctataat caagccctca 4441 tttgtgcttt tcatgtaagt atcaatgaat gttttaagct ctgctaatcc tccaaattgt 4501 gtcgtcagca aatcaattct tctacctgct tcaactaaat cagactcaga tttttttcga 4561 ctatctgcat ttgatttcac aaaggcatta tatgcttttt ctaaatcact taattgttcc 4621 atcgtagcct tagctttcaa ctctgcgtcg tgtagctgag ccttttcagt tagggccgtc 4681 aattgttgtt gagttagctt ttggtcagct tttccgtcta actgagattg aatgtcttct 4741 acggataagg accaatcagt ggctacatta ccgagttcta atttcattcc acagatttca 4801 atattacctg gtccgttttg accgaactga attgaatttt tctcagcgtc cgcagtgaag 4861 gaaagactgt acttaaccca agtcttatta cttatagcct taaaaagtat cctattagta 4921 tcgttcactg tccaggacct tactagtagg tttacagtag atcgatcact tgtagagctt 4981 acacgagccc agcaggatat tgtataacgt tgacctataa ctaagttaat aatctggcta 5041 aggtccttat tacccccgtt ggtgttgttt ttaactcgaa caccttttag gattccaggt 5101 acaggatatt tatccaaggt aacaggttcc gctactccgt taccacctga cgtactccgc 5161 caggtaccgt ctaatccatt tttaatagga agagttgcag tatttctaag caagttctgg 5221 gaacccactt gaacattagc tagtcggtca aaccatttat acttagttcg atctctacta 5281 tctgctgcgg taaaatcgga ataatagccc atatattgct ggcgattatc ctctaaacta 5341 aattcgcgtg atccgtctgc acttgctgcg tatgctatat ggaaatagga tgtcctacca 5401 tctgcaccag ccttacctgc cacgccattt gcgccatcac gacctttcca tcttgtccag 5461 cgataatcag caggatttct gctgtctgtt ggattaaagt caatgtacac cccaacaaag 5521 gctttgtcag tgtttgtttg actgaatcca ccacctgttg cgttatcngc ataggccatg 5581 tgagtatatt gtgtacgacc atctgcccct ctaggtccag gaataccttg ttcacctcgt 5641 gcgccttgca agccttgtaa accttgtaat ccacgttctc ctttttcccc gtgcacacca 5701 ataacagtag gctctgttgt cttacttgta ccgtttgtgt atagctcaac tcgataattc 5761 cataaataac gcttgtctga tgtgataggc tgtggcgtag ttgtccaccc tgcgcttgtt 5821 cttgtgatac ctgttgagac tgtagtagct aaataataat tagttacatt agaaatacca 5881 gtaccatctg ccccttttat caacgtccac ttatacactc tgtaatctgt actatctgcc 5941 tgagtgtaat ctgtgtatgt tccgatatac gttttatttg tactgtcagt agttgagaag 6001 ccttgtgagc cgttatttga tgtggcgtaa gctatgtgta agtatggtgt cctaccatct 6061 gcaccagccc tacctgccac gccatttgcg ccatcacgac ctttccatct tgtccagcga 6121 taatcagcag gatttctgct gtctg 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