SUTH_00001	SM00382	ATPases associated with a variety of cellular activities
SUTH_00001	SM00760	Bacterial dnaA protein helix-turn-helix domain
SUTH_00002	SM00480	DNA polymerase III beta subunit
SUTH_00003	SM00387	Histidine kinase-like ATPases
SUTH_00003	SM00433	TopoisomeraseII
SUTH_00006	SM00487	DEAD-like helicases superfamily
SUTH_00006	SM00490	helicase superfamily c-terminal domain
SUTH_00027	SM00925	MltA specific insert domain
SUTH_00037	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_00047	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_00050	SM00382	ATPases associated with a variety of cellular activities
SUTH_00050	SM00448	cheY-homologous receiver domain
SUTH_00051	SM00387	Histidine kinase-like ATPases
SUTH_00051	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00053	SM01230	SUTH_00053
SUTH_00055	SM00450	Rhodanese Homology Domain
SUTH_00060	SM00155	Phospholipase D. Active site motifs.
SUTH_00061	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_00062	SM00382	ATPases associated with a variety of cellular activities
SUTH_00065	SM00062	Bacterial periplasmic substrate-binding proteins
SUTH_00066	SM00382	ATPases associated with a variety of cellular activities
SUTH_00076	SM00342	helix_turn_helix, arabinose operon control protein
SUTH_00081	SM00829	Enoylreductase
SUTH_00087	SM00460	Transglutaminase/protease-like homologues
SUTH_00094	SM00382	ATPases associated with a variety of cellular activities
SUTH_00095	SM00382	ATPases associated with a variety of cellular activities
SUTH_00111	SM00487	DEAD-like helicases superfamily
SUTH_00111	SM00490	helicase superfamily c-terminal domain
SUTH_00112	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00112	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00114	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
SUTH_00114	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
SUTH_00114	SM00493	SUTH_00114
SUTH_00117	SM00257	Lysin motif
SUTH_00120	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_00120	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SUTH_00120	SM00245	tail specific protease
SUTH_00127	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00127	SM00387	Histidine kinase-like ATPases
SUTH_00127	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00128	SM00448	cheY-homologous receiver domain
SUTH_00132	SM00487	DEAD-like helicases superfamily
SUTH_00139	SM00831	Cation transporter/ATPase, N-terminus
SUTH_00141	SM00644	SUTH_00141
SUTH_00143	SM00474	3'-5' exonuclease
SUTH_00169	SM00903	Flavin reductase like domain
SUTH_00173	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00174	SM00883	Chaperonin 10 Kd subunit
SUTH_00177	SM00448	cheY-homologous receiver domain
SUTH_00177	SM00862	Transcriptional regulatory protein, C terminal
SUTH_00178	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00178	SM00387	Histidine kinase-like ATPases
SUTH_00178	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00181	SM00028	Tetratricopeptide repeats
SUTH_00183	SM00220	Serine/Threonine protein kinases, catalytic domain
SUTH_00195	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_00204	SM00460	Transglutaminase/protease-like homologues
SUTH_00214	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
SUTH_00215	SM00382	ATPases associated with a variety of cellular activities
SUTH_00215	SM00448	cheY-homologous receiver domain
SUTH_00216	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00216	SM00387	Histidine kinase-like ATPases
SUTH_00216	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00230	SM00845	GatB domain
SUTH_00239	SM00936	Penicillin-binding protein 5, C-terminal domain 
SUTH_00243	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_00244	SM00563	Phosphate acyltransferases
SUTH_00245	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_00247	SM00320	WD40 repeats
SUTH_00248	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_00258	SM00732	Likely ribonuclease with RNase H fold.
SUTH_00262	SM00487	DEAD-like helicases superfamily
SUTH_00262	SM00490	helicase superfamily c-terminal domain
SUTH_00263	SM01152	SUTH_00263
SUTH_00267	SM00382	ATPases associated with a variety of cellular activities
SUTH_00269	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00271	SM00981	SUTH_00271
SUTH_00275	SM00382	ATPases associated with a variety of cellular activities
SUTH_00276	SM00382	ATPases associated with a variety of cellular activities
SUTH_00283	SM00448	cheY-homologous receiver domain
SUTH_00286	SM00450	Rhodanese Homology Domain
SUTH_00297	SM00836	DALR anticodon binding domain
SUTH_00297	SM01016	Arginyl tRNA synthetase N terminal dom
SUTH_00305	SM00382	ATPases associated with a variety of cellular activities
SUTH_00314	SM00267	diguanylate cyclase
SUTH_00316	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_00319	SM00331	Sigma factor PP2C-like phosphatases
SUTH_00319	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
SUTH_00320	SM00220	Serine/Threonine protein kinases, catalytic domain
SUTH_00323	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00323	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00324	SM00260	Two component signalling adaptor domain
SUTH_00330	SM00563	Phosphate acyltransferases
SUTH_00331	SM00937	SUTH_00331
SUTH_00336	SM01004	Delta-aminolevulinic acid dehydratase
SUTH_00345	SM00834	Putative regulatory protein
SUTH_00348	SM01091	Transporter associated domain
SUTH_00350	SM00382	ATPases associated with a variety of cellular activities
SUTH_00350	SM00962	SRP54-type protein, GTPase domain
SUTH_00350	SM00963	SRP54-type protein, helical bundle domain
SUTH_00362	SM00382	ATPases associated with a variety of cellular activities
SUTH_00372	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
SUTH_00384	SM00382	ATPases associated with a variety of cellular activities
SUTH_00386	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SUTH_00387	SM00226	Low molecular weight phosphatase family
SUTH_00393	SM00052	Putative diguanylate phosphodiesterase
SUTH_00393	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_00393	SM00091	PAS domain
SUTH_00393	SM00267	diguanylate cyclase
SUTH_00393	SM00448	cheY-homologous receiver domain
SUTH_00394	SM00052	Putative diguanylate phosphodiesterase
SUTH_00394	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_00394	SM00091	PAS domain
SUTH_00394	SM00267	diguanylate cyclase
SUTH_00394	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00395	SM00450	Rhodanese Homology Domain
SUTH_00418	SM00450	Rhodanese Homology Domain
SUTH_00426	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
SUTH_00430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00430	SM00387	Histidine kinase-like ATPases
SUTH_00430	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00431	SM00382	ATPases associated with a variety of cellular activities
SUTH_00431	SM00448	cheY-homologous receiver domain
SUTH_00434	SM00382	ATPases associated with a variety of cellular activities
SUTH_00434	SM00448	cheY-homologous receiver domain
SUTH_00435	SM00387	Histidine kinase-like ATPases
SUTH_00435	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00437	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
SUTH_00444	SM00387	Histidine kinase-like ATPases
SUTH_00444	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00445	SM00382	ATPases associated with a variety of cellular activities
SUTH_00445	SM00448	cheY-homologous receiver domain
SUTH_00451	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_00451	SM00954	Region found in RelA / SpoT proteins
SUTH_00452	SM01409	SUTH_00452
SUTH_00453	SM00072	Guanylate kinase homologues.
SUTH_00461	SM00749	bacterial OsmY and nodulation domain
SUTH_00463	SM00966	SpoVT / AbrB like domain 
SUTH_00470	SM00849	Metallo-beta-lactamase superfamily
SUTH_00488	SM00382	ATPases associated with a variety of cellular activities
SUTH_00492	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00492	SM00387	Histidine kinase-like ATPases
SUTH_00492	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00493	SM00448	cheY-homologous receiver domain
SUTH_00493	SM00862	Transcriptional regulatory protein, C terminal
SUTH_00496	SM00054	EF-hand, calcium binding motif
SUTH_00498	SM00382	ATPases associated with a variety of cellular activities
SUTH_00502	SM00347	helix_turn_helix multiple antibiotic resistance protein
SUTH_00525	SM00938	Nitrogen regulatory protein P-II
SUTH_00527	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00530	SM00849	Metallo-beta-lactamase superfamily
SUTH_00531	SM00422	helix_turn_helix, mercury resistance
SUTH_00536	SM00947	Carbonic anhydrase
SUTH_00545	SM00878	Biotin carboxylase C-terminal domain
SUTH_00548	SM00849	Metallo-beta-lactamase superfamily
SUTH_00553	SM00464	Found in ATP-dependent protease La (LON)
SUTH_00554	SM00478	endonuclease III
SUTH_00554	SM00525	SUTH_00554
SUTH_00556	SM00903	Flavin reductase like domain
SUTH_00560	SM00028	Tetratricopeptide repeats
SUTH_00562	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_00562	SM00320	WD40 repeats
SUTH_00565	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
SUTH_00574	SM00382	ATPases associated with a variety of cellular activities
SUTH_00574	SM01086	C-terminal, D2-small domain, of ClpB protein
SUTH_00576	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_00578	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_00578	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SUTH_00579	SM00320	WD40 repeats
SUTH_00583	SM01219	SUTH_00583
SUTH_00585	SM00842	Cell division protein FtsA
SUTH_00592	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_00597	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_00599	SM00838	Elongation factor G C-terminus
SUTH_00599	SM00889	Elongation factor G, domain IV
SUTH_00600	SM00746	metallochaperone-like domain
SUTH_00610	SM00448	cheY-homologous receiver domain
SUTH_00610	SM00862	Transcriptional regulatory protein, C terminal
SUTH_00611	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_00611	SM00387	Histidine kinase-like ATPases
SUTH_00611	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00615	SM00387	Histidine kinase-like ATPases
SUTH_00616	SM00421	helix_turn_helix, Lux Regulon
SUTH_00616	SM00448	cheY-homologous receiver domain
SUTH_00620	SM00342	helix_turn_helix, arabinose operon control protein
SUTH_00624	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_00626	SM00382	ATPases associated with a variety of cellular activities
SUTH_00630	SM00382	ATPases associated with a variety of cellular activities
SUTH_00635	SM00421	helix_turn_helix, Lux Regulon
SUTH_00635	SM00448	cheY-homologous receiver domain
SUTH_00646	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
SUTH_00646	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SUTH_00647	SM00649	Ribosomal protein L11/L12
SUTH_00652	SM00663	RNA polymerase I subunit A N-terminus
SUTH_00655	SM00838	Elongation factor G C-terminus
SUTH_00655	SM00889	Elongation factor G, domain IV
SUTH_00657	SM01403	SUTH_00657
SUTH_00661	SM01382	SUTH_00661
SUTH_00661	SM01383	SUTH_00661
SUTH_00664	SM00322	K homology RNA-binding domain
SUTH_00668	SM01374	SUTH_00668
SUTH_00669	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
SUTH_00679	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_00682	SM00363	S4 RNA-binding domain
SUTH_00682	SM01390	SUTH_00682
SUTH_00683	SM00662	RNA polymerases D
SUTH_00697	SM00052	Putative diguanylate phosphodiesterase
SUTH_00697	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_00697	SM00091	PAS domain
SUTH_00697	SM00267	diguanylate cyclase
SUTH_00702	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SUTH_00702	SM00895	SUTH_00702
SUTH_00703	SM00855	Phosphoglycerate mutase family
SUTH_00710	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SUTH_00710	SM00245	tail specific protease
SUTH_00712	SM00855	Phosphoglycerate mutase family
SUTH_00713	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SUTH_00714	SM00450	Rhodanese Homology Domain
SUTH_00720	SM00382	ATPases associated with a variety of cellular activities
SUTH_00730	SM00965	Secretin and TonB N terminus short domain
SUTH_00732	SM00028	Tetratricopeptide repeats
SUTH_00735	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_00735	SM00876	Biotin and Thiamin Synthesis associated domain
SUTH_00745	SM01034	Sensors of blue-light using FAD
SUTH_00755	SM00052	Putative diguanylate phosphodiesterase
SUTH_00755	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_00755	SM00091	PAS domain
SUTH_00755	SM00267	diguanylate cyclase
SUTH_00759	SM00327	von Willebrand factor (vWF) type A domain
SUTH_00763	SM00861	Transketolase, pyrimidine binding domain
SUTH_00764	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
SUTH_00775	SM00419	helix_turn_helix, cAMP Regulatory protein
SUTH_00779	SM00650	Ribosomal RNA adenine dimethylases
SUTH_00786	SM01011	Aminopeptidase P, N-terminal domain
SUTH_00790	SM00798	AICARFT/IMPCHase bienzyme
SUTH_00790	SM00851	MGS-like domain
SUTH_00791	SM01209	SUTH_00791
SUTH_00791	SM01210	SUTH_00791
SUTH_00802	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SUTH_00805	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_00817	SM00411	bacterial (prokaryotic) histone like domain
SUTH_00819	SM00450	Rhodanese Homology Domain
SUTH_00822	SM00646	SUTH_00822
SUTH_00823	SM00904	Riboflavin kinase
SUTH_00850	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_00850	SM00419	helix_turn_helix, cAMP Regulatory protein
SUTH_00853	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_00853	SM00419	helix_turn_helix, cAMP Regulatory protein
SUTH_00854	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_00856	SM00450	Rhodanese Homology Domain
SUTH_00871	SM00938	Nitrogen regulatory protein P-II
SUTH_00872	SM00463	Small MutS-related domain
SUTH_00875	SM00912	haemagglutination activity domain
SUTH_00878	SM00843	SUTH_00878
SUTH_00880	SM00382	ATPases associated with a variety of cellular activities
SUTH_00882	SM00062	Bacterial periplasmic substrate-binding proteins
SUTH_00884	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_00885	SM00507	HNH nucleases
SUTH_00892	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00893	SM00448	cheY-homologous receiver domain
SUTH_00894	SM00073	Histidine Phosphotransfer domain
SUTH_00894	SM00260	Two component signalling adaptor domain
SUTH_00894	SM00387	Histidine kinase-like ATPases
SUTH_00894	SM01231	SUTH_00894
SUTH_00895	SM00260	Two component signalling adaptor domain
SUTH_00896	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_00896	SM00091	PAS domain
SUTH_00896	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00897	SM00138	Methyltransferase, chemotaxis proteins 
SUTH_00899	SM00448	cheY-homologous receiver domain
SUTH_00901	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_00902	SM00260	Two component signalling adaptor domain
SUTH_00902	SM00448	cheY-homologous receiver domain
SUTH_00903	SM00260	Two component signalling adaptor domain
SUTH_00903	SM00448	cheY-homologous receiver domain
SUTH_00904	SM00448	cheY-homologous receiver domain
SUTH_00906	SM00073	Histidine Phosphotransfer domain
SUTH_00906	SM00260	Two component signalling adaptor domain
SUTH_00906	SM00387	Histidine kinase-like ATPases
SUTH_00906	SM01231	SUTH_00906
SUTH_00909	SM00382	ATPases associated with a variety of cellular activities
SUTH_00909	SM00962	SRP54-type protein, GTPase domain
SUTH_00916	SM00858	SUTH_00916
SUTH_00926	SM00047	Lysozyme subfamily 2
SUTH_00939	SM00382	ATPases associated with a variety of cellular activities
SUTH_00943	SM00387	Histidine kinase-like ATPases
SUTH_00943	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_00944	SM00382	ATPases associated with a variety of cellular activities
SUTH_00944	SM00448	cheY-homologous receiver domain
SUTH_00948	SM00382	ATPases associated with a variety of cellular activities
SUTH_00949	SM00028	Tetratricopeptide repeats
SUTH_00957	SM00671	Sel1-like repeats.
SUTH_00976	SM00327	von Willebrand factor (vWF) type A domain
SUTH_00978	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
SUTH_00978	SM00450	Rhodanese Homology Domain
SUTH_00990	SM00347	helix_turn_helix multiple antibiotic resistance protein
SUTH_00992	SM00028	Tetratricopeptide repeats
SUTH_00997	SM00822	SUTH_00997
SUTH_01002	SM00448	cheY-homologous receiver domain
SUTH_01002	SM01012	SUTH_01002
SUTH_01005	SM00382	ATPases associated with a variety of cellular activities
SUTH_01008	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
SUTH_01010	SM00240	Forkhead associated domain
SUTH_01011	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_01011	SM00220	Serine/Threonine protein kinases, catalytic domain
SUTH_01012	SM00387	Histidine kinase-like ATPases
SUTH_01020	SM00091	PAS domain
SUTH_01020	SM00387	Histidine kinase-like ATPases
SUTH_01020	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01020	SM00448	cheY-homologous receiver domain
SUTH_01025	SM00382	ATPases associated with a variety of cellular activities
SUTH_01032	SM00382	ATPases associated with a variety of cellular activities
SUTH_01034	SM00478	endonuclease III
SUTH_01036	SM00900	SUTH_01036
SUTH_01050	SM00421	helix_turn_helix, Lux Regulon
SUTH_01050	SM00448	cheY-homologous receiver domain
SUTH_01051	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_01051	SM00091	PAS domain
SUTH_01051	SM00387	Histidine kinase-like ATPases
SUTH_01051	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01055	SM00562	SUTH_01055
SUTH_01057	SM00028	Tetratricopeptide repeats
SUTH_01062	SM00564	beta-propeller repeat
SUTH_01063	SM00382	ATPases associated with a variety of cellular activities
SUTH_01066	SM00244	prohibitin homologues
SUTH_01067	SM00244	prohibitin homologues
SUTH_01070	SM00788	Adenylosuccinate synthetase
SUTH_01072	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_01072	SM00357	Cold shock protein domain
SUTH_01072	SM00955	SUTH_01072
SUTH_01081	SM00887	Ethylbenzene dehydrogenase
SUTH_01087	SM00382	ATPases associated with a variety of cellular activities
SUTH_01087	SM01086	C-terminal, D2-small domain, of ClpB protein
SUTH_01089	SM00357	Cold shock protein domain
SUTH_01090	SM01329	SUTH_01090
SUTH_01098	SM00671	Sel1-like repeats.
SUTH_01123	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_01123	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_01129	SM00829	Enoylreductase
SUTH_01135	SM00382	ATPases associated with a variety of cellular activities
SUTH_01136	SM00382	ATPases associated with a variety of cellular activities
SUTH_01141	SM00046	Diacylglycerol kinase catalytic domain (presumed)
SUTH_01142	SM00028	Tetratricopeptide repeats
SUTH_01152	SM00448	cheY-homologous receiver domain
SUTH_01152	SM00862	Transcriptional regulatory protein, C terminal
SUTH_01153	SM00387	Histidine kinase-like ATPases
SUTH_01160	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_01160	SM00240	Forkhead associated domain
SUTH_01163	SM00382	ATPases associated with a variety of cellular activities
SUTH_01167	SM00257	Lysin motif
SUTH_01169	SM00849	Metallo-beta-lactamase superfamily
SUTH_01172	SM00479	SUTH_01172
SUTH_01176	SM00829	Enoylreductase
SUTH_01186	SM00091	PAS domain
SUTH_01186	SM00387	Histidine kinase-like ATPases
SUTH_01186	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01186	SM00448	cheY-homologous receiver domain
SUTH_01194	SM00382	ATPases associated with a variety of cellular activities
SUTH_01203	SM00966	SpoVT / AbrB like domain 
SUTH_01208	SM00052	Putative diguanylate phosphodiesterase
SUTH_01208	SM00267	diguanylate cyclase
SUTH_01214	SM00267	diguanylate cyclase
SUTH_01215	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_01226	SM00347	helix_turn_helix multiple antibiotic resistance protein
SUTH_01228	SM00382	ATPases associated with a variety of cellular activities
SUTH_01229	SM00382	ATPases associated with a variety of cellular activities
SUTH_01256	SM00248	ankyrin repeats
SUTH_01257	SM00448	cheY-homologous receiver domain
SUTH_01259	SM00267	diguanylate cyclase
SUTH_01259	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_01265	SM00382	ATPases associated with a variety of cellular activities
SUTH_01269	SM00919	Malic enzyme, NAD binding domain
SUTH_01269	SM01274	SUTH_01269
SUTH_01279	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01286	SM00479	SUTH_01286
SUTH_01289	SM00357	Cold shock protein domain
SUTH_01289	SM00382	ATPases associated with a variety of cellular activities
SUTH_01289	SM00959	Rho termination factor, N-terminal domain
SUTH_01298	SM01329	SUTH_01298
SUTH_01299	SM00859	Semialdehyde dehydrogenase, NAD binding domain
SUTH_01316	SM00028	Tetratricopeptide repeats
SUTH_01317	SM00840	SUTH_01317
SUTH_01324	SM00271	DnaJ molecular chaperone homology domain
SUTH_01327	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_01327	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_01328	SM00052	Putative diguanylate phosphodiesterase
SUTH_01328	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_01328	SM00091	PAS domain
SUTH_01328	SM00267	diguanylate cyclase
SUTH_01339	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
SUTH_01341	SM00851	MGS-like domain
SUTH_01341	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
SUTH_01344	SM01103	SUTH_01344
SUTH_01346	SM00382	ATPases associated with a variety of cellular activities
SUTH_01349	SM00052	Putative diguanylate phosphodiesterase
SUTH_01349	SM00267	diguanylate cyclase
SUTH_01352	SM00331	Sigma factor PP2C-like phosphatases
SUTH_01360	SM00563	Phosphate acyltransferases
SUTH_01364	SM00382	ATPases associated with a variety of cellular activities
SUTH_01383	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
SUTH_01384	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
SUTH_01393	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_01394	SM00421	helix_turn_helix, Lux Regulon
SUTH_01394	SM00448	cheY-homologous receiver domain
SUTH_01396	SM00829	Enoylreductase
SUTH_01398	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_01405	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01407	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01421	SM00900	SUTH_01421
SUTH_01428	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
SUTH_01428	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
SUTH_01452	SM00849	Metallo-beta-lactamase superfamily
SUTH_01463	SM00267	diguanylate cyclase
SUTH_01465	SM00382	ATPases associated with a variety of cellular activities
SUTH_01465	SM00448	cheY-homologous receiver domain
SUTH_01467	SM00387	Histidine kinase-like ATPases
SUTH_01467	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01476	SM00028	Tetratricopeptide repeats
SUTH_01479	SM00346	helix_turn_helix isocitrate lyase regulation
SUTH_01486	SM00893	Electron transfer flavoprotein domain
SUTH_01487	SM00893	Electron transfer flavoprotein domain
SUTH_01489	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_01494	SM00363	S4 RNA-binding domain
SUTH_01500	SM00382	ATPases associated with a variety of cellular activities
SUTH_01501	SM00670	Large family of predicted nucleotide-binding domains
SUTH_01518	SM00434	DNA Topoisomerase IV
SUTH_01519	SM00387	Histidine kinase-like ATPases
SUTH_01519	SM00433	TopoisomeraseII
SUTH_01529	SM00481	DNA polymerase alpha chain like domain
SUTH_01535	SM00363	S4 RNA-binding domain
SUTH_01537	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_01537	SM00322	K homology RNA-binding domain
SUTH_01541	SM01387	SUTH_01541
SUTH_01542	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_01542	SM00322	K homology RNA-binding domain
SUTH_01545	SM00507	HNH nucleases
SUTH_01549	SM00855	Phosphoglycerate mutase family
SUTH_01558	SM00903	Flavin reductase like domain
SUTH_01560	SM00014	Acid phosphatase homologues
SUTH_01566	SM00841	Elongation factor P, C-terminal
SUTH_01566	SM01185	SUTH_01566
SUTH_01568	SM00986	Uracil DNA glycosylase superfamily
SUTH_01568	SM00987	UreE urease accessory protein, C-terminal domain 
SUTH_01569	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SUTH_01569	SM00465	GIY-YIG type nucleases (URI domain)
SUTH_01575	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_01578	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01598	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
SUTH_01598	SM00534	ATPase domain of DNA mismatch repair MUTS family
SUTH_01607	SM00271	DnaJ molecular chaperone homology domain
SUTH_01613	SM00838	Elongation factor G C-terminus
SUTH_01617	SM00267	diguanylate cyclase
SUTH_01619	SM00881	CoA binding domain
SUTH_01635	SM00829	Enoylreductase
SUTH_01636	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01644	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01652	SM00481	DNA polymerase alpha chain like domain
SUTH_01655	SM00829	Enoylreductase
SUTH_01657	SM00822	SUTH_01657
SUTH_01663	SM00382	ATPases associated with a variety of cellular activities
SUTH_01664	SM00382	ATPases associated with a variety of cellular activities
SUTH_01668	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
SUTH_01669	SM00347	helix_turn_helix multiple antibiotic resistance protein
SUTH_01678	SM00028	Tetratricopeptide repeats
SUTH_01687	SM00248	ankyrin repeats
SUTH_01689	SM01322	SUTH_01689
SUTH_01697	SM01126	SUTH_01697
SUTH_01707	SM00487	DEAD-like helicases superfamily
SUTH_01707	SM00490	helicase superfamily c-terminal domain
SUTH_01708	SM00226	Low molecular weight phosphatase family
SUTH_01709	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_01710	SM00363	S4 RNA-binding domain
SUTH_01717	SM00382	ATPases associated with a variety of cellular activities
SUTH_01723	SM00563	Phosphate acyltransferases
SUTH_01723	SM00823	Phosphopantetheine attachment site
SUTH_01726	SM00382	ATPases associated with a variety of cellular activities
SUTH_01727	SM00382	ATPases associated with a variety of cellular activities
SUTH_01739	SM00968	SMC proteins Flexible Hinge Domain
SUTH_01740	SM00771	ZipA, C-terminal domain (FtsZ-binding)
SUTH_01741	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SUTH_01741	SM00292	breast cancer carboxy-terminal domain
SUTH_01741	SM00532	Ligase N family
SUTH_01744	SM00411	bacterial (prokaryotic) histone like domain
SUTH_01745	SM00052	Putative diguanylate phosphodiesterase
SUTH_01745	SM00267	diguanylate cyclase
SUTH_01749	SM00267	diguanylate cyclase
SUTH_01750	SM00487	DEAD-like helicases superfamily
SUTH_01750	SM00490	helicase superfamily c-terminal domain
SUTH_01750	SM00982	SUTH_01750
SUTH_01750	SM01058	CarD-like/TRCF domain
SUTH_01759	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_01759	SM00091	PAS domain
SUTH_01759	SM00387	Histidine kinase-like ATPases
SUTH_01759	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01759	SM00448	cheY-homologous receiver domain
SUTH_01761	SM00387	Histidine kinase-like ATPases
SUTH_01761	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01762	SM00448	cheY-homologous receiver domain
SUTH_01762	SM00862	Transcriptional regulatory protein, C terminal
SUTH_01777	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_01781	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_01781	SM00387	Histidine kinase-like ATPases
SUTH_01781	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01782	SM00448	cheY-homologous receiver domain
SUTH_01782	SM00862	Transcriptional regulatory protein, C terminal
SUTH_01788	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_01788	SM00091	PAS domain
SUTH_01788	SM00387	Histidine kinase-like ATPases
SUTH_01789	SM00421	helix_turn_helix, Lux Regulon
SUTH_01789	SM00448	cheY-homologous receiver domain
SUTH_01799	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SUTH_01799	SM00866	SUTH_01799
SUTH_01806	SM00861	Transketolase, pyrimidine binding domain
SUTH_01813	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_01814	SM00382	ATPases associated with a variety of cellular activities
SUTH_01819	SM00736	Dystroglycan-type cadherin-like domains.
SUTH_01824	SM00387	Histidine kinase-like ATPases
SUTH_01827	SM00448	cheY-homologous receiver domain
SUTH_01830	SM00448	cheY-homologous receiver domain
SUTH_01830	SM00862	Transcriptional regulatory protein, C terminal
SUTH_01831	SM00091	PAS domain
SUTH_01831	SM00387	Histidine kinase-like ATPases
SUTH_01831	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01833	SM00091	PAS domain
SUTH_01833	SM00387	Histidine kinase-like ATPases
SUTH_01833	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01833	SM01079	SUTH_01833
SUTH_01834	SM00091	PAS domain
SUTH_01834	SM00387	Histidine kinase-like ATPases
SUTH_01834	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_01835	SM00448	cheY-homologous receiver domain
SUTH_01836	SM00052	Putative diguanylate phosphodiesterase
SUTH_01836	SM00091	PAS domain
SUTH_01836	SM00267	diguanylate cyclase
SUTH_01837	SM00448	cheY-homologous receiver domain
SUTH_01839	SM00448	cheY-homologous receiver domain
SUTH_01840	SM00507	HNH nucleases
SUTH_01847	SM00382	ATPases associated with a variety of cellular activities
SUTH_01848	SM00248	ankyrin repeats
SUTH_01850	SM00382	ATPases associated with a variety of cellular activities
SUTH_01858	SM00248	ankyrin repeats
SUTH_01859	SM00479	SUTH_01859
SUTH_01861	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01863	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01864	SM00411	bacterial (prokaryotic) histone like domain
SUTH_01876	SM00400	zinc finger
SUTH_01881	SM00671	Sel1-like repeats.
SUTH_01885	SM00671	Sel1-like repeats.
SUTH_01887	SM00506	Appr-1"-p processing enzyme
SUTH_01889	SM00327	von Willebrand factor (vWF) type A domain
SUTH_01925	SM00318	Staphylococcal nuclease homologues
SUTH_01931	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_01932	SM00255	Toll - interleukin 1 - resistance
SUTH_01936	SM00255	Toll - interleukin 1 - resistance
SUTH_01937	SM00487	DEAD-like helicases superfamily
SUTH_01945	SM00778	Zinc-binding domain of primase-helicase
SUTH_01946	SM00487	DEAD-like helicases superfamily
SUTH_01955	SM00470	ParB-like nuclease domain
SUTH_01964	SM00411	bacterial (prokaryotic) histone like domain
SUTH_01966	SM00363	S4 RNA-binding domain
SUTH_01971	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_01971	SM01240	SUTH_01971
SUTH_01978	SM00341	Helicase and RNase D C-terminal
SUTH_01978	SM00487	DEAD-like helicases superfamily
SUTH_01978	SM00490	helicase superfamily c-terminal domain
SUTH_01978	SM00956	SUTH_01978
SUTH_01983	SM00984	UDP binding domain
SUTH_01984	SM00028	Tetratricopeptide repeats
SUTH_01986	SM00411	bacterial (prokaryotic) histone like domain
SUTH_01987	SM00316	Ribosomal protein S1-like RNA-binding domain
SUTH_01991	SM00830	Chorismate mutase type II
SUTH_01994	SM00434	DNA Topoisomerase IV
SUTH_02001	SM00387	Histidine kinase-like ATPases
SUTH_02002	SM00421	helix_turn_helix, Lux Regulon
SUTH_02002	SM00448	cheY-homologous receiver domain
SUTH_02003	SM00267	diguanylate cyclase
SUTH_02004	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_02005	SM00220	Serine/Threonine protein kinases, catalytic domain
SUTH_02012	SM00267	diguanylate cyclase
SUTH_02012	SM01079	SUTH_02012
SUTH_02015	SM00091	PAS domain
SUTH_02015	SM00387	Histidine kinase-like ATPases
SUTH_02019	SM00382	ATPases associated with a variety of cellular activities
SUTH_02019	SM00448	cheY-homologous receiver domain
SUTH_02042	SM00487	DEAD-like helicases superfamily
SUTH_02042	SM00490	helicase superfamily c-terminal domain
SUTH_02044	SM00052	Putative diguanylate phosphodiesterase
SUTH_02044	SM00267	diguanylate cyclase
SUTH_02048	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_02048	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02049	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
SUTH_02050	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
SUTH_02058	SM00387	Histidine kinase-like ATPases
SUTH_02058	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02059	SM00421	helix_turn_helix, Lux Regulon
SUTH_02059	SM00448	cheY-homologous receiver domain
SUTH_02070	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_02075	SM00382	ATPases associated with a variety of cellular activities
SUTH_02079	SM00382	ATPases associated with a variety of cellular activities
SUTH_02081	SM00822	SUTH_02081
SUTH_02082	SM00822	SUTH_02082
SUTH_02091	SM00387	Histidine kinase-like ATPases
SUTH_02091	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02091	SM00448	cheY-homologous receiver domain
SUTH_02092	SM00448	cheY-homologous receiver domain
SUTH_02092	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02093	SM00091	PAS domain
SUTH_02094	SM00138	Methyltransferase, chemotaxis proteins 
SUTH_02095	SM00073	Histidine Phosphotransfer domain
SUTH_02095	SM00091	PAS domain
SUTH_02095	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_02095	SM00387	Histidine kinase-like ATPases
SUTH_02095	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02095	SM00448	cheY-homologous receiver domain
SUTH_02096	SM00091	PAS domain
SUTH_02097	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02097	SM00091	PAS domain
SUTH_02097	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_02097	SM00387	Histidine kinase-like ATPases
SUTH_02097	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02097	SM00448	cheY-homologous receiver domain
SUTH_02103	SM00382	ATPases associated with a variety of cellular activities
SUTH_02105	SM00248	ankyrin repeats
SUTH_02109	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_02109	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_02109	SM00091	PAS domain
SUTH_02110	SM00091	PAS domain
SUTH_02110	SM00387	Histidine kinase-like ATPases
SUTH_02118	SM00493	SUTH_02118
SUTH_02120	SM00382	ATPases associated with a variety of cellular activities
SUTH_02126	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
SUTH_02130	SM00849	Metallo-beta-lactamase superfamily
SUTH_02131	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_02135	SM00382	ATPases associated with a variety of cellular activities
SUTH_02141	SM00966	SpoVT / AbrB like domain 
SUTH_02144	SM00052	Putative diguanylate phosphodiesterase
SUTH_02144	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02144	SM00091	PAS domain
SUTH_02144	SM00267	diguanylate cyclase
SUTH_02144	SM01079	SUTH_02144
SUTH_02151	SM00028	Tetratricopeptide repeats
SUTH_02152	SM00052	Putative diguanylate phosphodiesterase
SUTH_02152	SM00091	PAS domain
SUTH_02152	SM00267	diguanylate cyclase
SUTH_02152	SM01079	SUTH_02152
SUTH_02156	SM00344	helix_turn_helix ASNC type
SUTH_02159	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_02160	SM00852	Probable molybdopterin binding domain
SUTH_02161	SM00028	Tetratricopeptide repeats
SUTH_02165	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02168	SM00382	ATPases associated with a variety of cellular activities
SUTH_02178	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_02186	SM00358	Double-stranded RNA binding motif
SUTH_02186	SM00535	Ribonuclease III family
SUTH_02189	SM00838	Elongation factor G C-terminus
SUTH_02191	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SUTH_02198	SM00825	Beta-ketoacyl synthase
SUTH_02200	SM00822	SUTH_02200
SUTH_02201	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
SUTH_02225	SM01211	SUTH_02225
SUTH_02226	SM00267	diguanylate cyclase
SUTH_02228	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02228	SM00091	PAS domain
SUTH_02228	SM00267	diguanylate cyclase
SUTH_02229	SM01329	SUTH_02229
SUTH_02241	SM00062	Bacterial periplasmic substrate-binding proteins
SUTH_02242	SM00382	ATPases associated with a variety of cellular activities
SUTH_02243	SM00382	ATPases associated with a variety of cellular activities
SUTH_02249	SM00382	ATPases associated with a variety of cellular activities
SUTH_02250	SM01005	Alanine racemase, C-terminal domain
SUTH_02254	SM00986	Uracil DNA glycosylase superfamily
SUTH_02254	SM00987	UreE urease accessory protein, C-terminal domain 
SUTH_02257	SM00244	prohibitin homologues
SUTH_02259	SM00411	bacterial (prokaryotic) histone like domain
SUTH_02260	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SUTH_02266	SM00935	Outer membrane protein (OmpH-like)
SUTH_02268	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SUTH_02278	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02279	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02288	SM00382	ATPases associated with a variety of cellular activities
SUTH_02294	SM00363	S4 RNA-binding domain
SUTH_02300	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_02302	SM00479	SUTH_02302
SUTH_02304	SM00448	cheY-homologous receiver domain
SUTH_02305	SM00387	Histidine kinase-like ATPases
SUTH_02305	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02313	SM00954	Region found in RelA / SpoT proteins
SUTH_02316	SM00052	Putative diguanylate phosphodiesterase
SUTH_02316	SM00091	PAS domain
SUTH_02316	SM00267	diguanylate cyclase
SUTH_02332	SM00698	Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
SUTH_02333	SM00346	helix_turn_helix isocitrate lyase regulation
SUTH_02341	SM00829	Enoylreductase
SUTH_02345	SM00240	Forkhead associated domain
SUTH_02346	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02347	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02347	SM00091	PAS domain
SUTH_02347	SM00387	Histidine kinase-like ATPases
SUTH_02347	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02347	SM00448	cheY-homologous receiver domain
SUTH_02350	SM00487	DEAD-like helicases superfamily
SUTH_02350	SM00490	helicase superfamily c-terminal domain
SUTH_02353	SM01192	SUTH_02353
SUTH_02353	SM01193	SUTH_02353
SUTH_02358	SM00937	SUTH_02358
SUTH_02371	SM00382	ATPases associated with a variety of cellular activities
SUTH_02373	SM01043	Bacterial transcriptional activator domain
SUTH_02389	SM00028	Tetratricopeptide repeats
SUTH_02390	SM00671	Sel1-like repeats.
SUTH_02391	SM00671	Sel1-like repeats.
SUTH_02397	SM00858	SUTH_02397
SUTH_02399	SM00240	Forkhead associated domain
SUTH_02403	SM00028	Tetratricopeptide repeats
SUTH_02406	SM00912	haemagglutination activity domain
SUTH_02409	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02416	SM00849	Metallo-beta-lactamase superfamily
SUTH_02418	SM01130	SUTH_02418
SUTH_02422	SM00460	Transglutaminase/protease-like homologues
SUTH_02425	SM00257	Lysin motif
SUTH_02432	SM00422	helix_turn_helix, mercury resistance
SUTH_02433	SM00411	bacterial (prokaryotic) histone like domain
SUTH_02434	SM00873	B3/4 domain
SUTH_02434	SM00874	tRNA synthetase B5 domain
SUTH_02434	SM00896	Ferredoxin-fold anticodon binding domain
SUTH_02439	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
SUTH_02443	SM00829	Enoylreductase
SUTH_02446	SM00704	CDGSH-type zinc finger. Function unknown.
SUTH_02448	SM00382	ATPases associated with a variety of cellular activities
SUTH_02454	SM00382	ATPases associated with a variety of cellular activities
SUTH_02454	SM00464	Found in ATP-dependent protease La (LON)
SUTH_02455	SM00382	ATPases associated with a variety of cellular activities
SUTH_02455	SM00994	ClpX C4-type zinc finger
SUTH_02455	SM01086	C-terminal, D2-small domain, of ClpB protein
SUTH_02462	SM00382	ATPases associated with a variety of cellular activities
SUTH_02464	SM00450	Rhodanese Homology Domain
SUTH_02465	SM00448	cheY-homologous receiver domain
SUTH_02465	SM00850	LytTr DNA-binding domain
SUTH_02466	SM00387	Histidine kinase-like ATPases
SUTH_02469	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_02470	SM00881	CoA binding domain
SUTH_02472	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_02472	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_02472	SM00091	PAS domain
SUTH_02477	SM00966	SpoVT / AbrB like domain 
SUTH_02478	SM00382	ATPases associated with a variety of cellular activities
SUTH_02478	SM01086	C-terminal, D2-small domain, of ClpB protein
SUTH_02479	SM00073	Histidine Phosphotransfer domain
SUTH_02479	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02479	SM00091	PAS domain
SUTH_02479	SM00387	Histidine kinase-like ATPases
SUTH_02479	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02479	SM00448	cheY-homologous receiver domain
SUTH_02480	SM00267	diguanylate cyclase
SUTH_02480	SM00448	cheY-homologous receiver domain
SUTH_02486	SM00852	Probable molybdopterin binding domain
SUTH_02489	SM00487	DEAD-like helicases superfamily
SUTH_02489	SM00491	SUTH_02489
SUTH_02497	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02502	SM00091	PAS domain
SUTH_02502	SM00138	Methyltransferase, chemotaxis proteins 
SUTH_02503	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02503	SM00091	PAS domain
SUTH_02504	SM00091	PAS domain
SUTH_02504	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_02505	SM00448	cheY-homologous receiver domain
SUTH_02505	SM01012	SUTH_02505
SUTH_02506	SM00052	Putative diguanylate phosphodiesterase
SUTH_02506	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02506	SM00091	PAS domain
SUTH_02506	SM00267	diguanylate cyclase
SUTH_02507	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02507	SM00091	PAS domain
SUTH_02507	SM00387	Histidine kinase-like ATPases
SUTH_02507	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02507	SM00448	cheY-homologous receiver domain
SUTH_02508	SM00448	cheY-homologous receiver domain
SUTH_02508	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02509	SM00448	cheY-homologous receiver domain
SUTH_02520	SM00849	Metallo-beta-lactamase superfamily
SUTH_02529	SM00822	SUTH_02529
SUTH_02531	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02536	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_02538	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02555	SM00382	ATPases associated with a variety of cellular activities
SUTH_02560	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_02561	SM00710	Parallel beta-helix repeats
SUTH_02561	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
SUTH_02566	SM00382	ATPases associated with a variety of cellular activities
SUTH_02569	SM00710	Parallel beta-helix repeats
SUTH_02569	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
SUTH_02575	SM00448	cheY-homologous receiver domain
SUTH_02576	SM00387	Histidine kinase-like ATPases
SUTH_02576	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02580	SM00344	helix_turn_helix ASNC type
SUTH_02584	SM00887	Ethylbenzene dehydrogenase
SUTH_02589	SM00382	ATPases associated with a variety of cellular activities
SUTH_02594	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_02602	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02602	SM00091	PAS domain
SUTH_02602	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_02602	SM00387	Histidine kinase-like ATPases
SUTH_02602	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02602	SM00448	cheY-homologous receiver domain
SUTH_02623	SM00855	Phosphoglycerate mutase family
SUTH_02624	SM00091	PAS domain
SUTH_02624	SM00267	diguanylate cyclase
SUTH_02625	SM00506	Appr-1"-p processing enzyme
SUTH_02631	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_02637	SM00857	Resolvase, N terminal domain
SUTH_02641	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_02643	SM00822	SUTH_02643
SUTH_02644	SM00822	SUTH_02644
SUTH_02654	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_02654	SM00387	Histidine kinase-like ATPases
SUTH_02654	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02654	SM00448	cheY-homologous receiver domain
SUTH_02655	SM00387	Histidine kinase-like ATPases
SUTH_02655	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02655	SM00448	cheY-homologous receiver domain
SUTH_02656	SM00967	RNA 2'-O ribose methyltransferase substrate binding
SUTH_02664	SM00853	MutL C terminal dimerisation domain
SUTH_02664	SM01340	SUTH_02664
SUTH_02684	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02684	SM00091	PAS domain
SUTH_02684	SM00267	diguanylate cyclase
SUTH_02689	SM00861	Transketolase, pyrimidine binding domain
SUTH_02695	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
SUTH_02700	SM00917	LeuA allosteric (dimerisation) domain
SUTH_02721	SM01323	SUTH_02721
SUTH_02724	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02724	SM00419	helix_turn_helix, cAMP Regulatory protein
SUTH_02732	SM00382	ATPases associated with a variety of cellular activities
SUTH_02734	SM00880	SUTH_02734
SUTH_02734	SM01118	SUTH_02734
SUTH_02735	SM00855	Phosphoglycerate mutase family
SUTH_02736	SM00347	helix_turn_helix multiple antibiotic resistance protein
SUTH_02741	SM00052	Putative diguanylate phosphodiesterase
SUTH_02741	SM00267	diguanylate cyclase
SUTH_02741	SM00448	cheY-homologous receiver domain
SUTH_02742	SM00448	cheY-homologous receiver domain
SUTH_02743	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02743	SM00091	PAS domain
SUTH_02743	SM00387	Histidine kinase-like ATPases
SUTH_02743	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02744	SM00487	DEAD-like helicases superfamily
SUTH_02744	SM00490	helicase superfamily c-terminal domain
SUTH_02746	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_02747	SM00448	cheY-homologous receiver domain
SUTH_02761	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
SUTH_02765	SM00267	diguanylate cyclase
SUTH_02788	SM00382	ATPases associated with a variety of cellular activities
SUTH_02794	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_02794	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02795	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_02795	SM00382	ATPases associated with a variety of cellular activities
SUTH_02796	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02796	SM00450	Rhodanese Homology Domain
SUTH_02797	SM00849	Metallo-beta-lactamase superfamily
SUTH_02798	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_02798	SM01080	SUTH_02798
SUTH_02799	SM00240	Forkhead associated domain
SUTH_02800	SM00331	Sigma factor PP2C-like phosphatases
SUTH_02800	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
SUTH_02801	SM00220	Serine/Threonine protein kinases, catalytic domain
SUTH_02801	SM01080	SUTH_02801
SUTH_02802	SM00881	CoA binding domain
SUTH_02821	SM00849	Metallo-beta-lactamase superfamily
SUTH_02822	SM00248	ankyrin repeats
SUTH_02824	SM00052	Putative diguanylate phosphodiesterase
SUTH_02824	SM00267	diguanylate cyclase
SUTH_02826	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
SUTH_02832	SM00052	Putative diguanylate phosphodiesterase
SUTH_02832	SM00267	diguanylate cyclase
SUTH_02845	SM00670	Large family of predicted nucleotide-binding domains
SUTH_02852	SM00382	ATPases associated with a variety of cellular activities
SUTH_02858	SM00382	ATPases associated with a variety of cellular activities
SUTH_02859	SM00382	ATPases associated with a variety of cellular activities
SUTH_02859	SM00448	cheY-homologous receiver domain
SUTH_02862	SM00028	Tetratricopeptide repeats
SUTH_02863	SM00382	ATPases associated with a variety of cellular activities
SUTH_02871	SM00422	helix_turn_helix, mercury resistance
SUTH_02876	SM00878	Biotin carboxylase C-terminal domain
SUTH_02883	SM00091	PAS domain
SUTH_02883	SM00331	Sigma factor PP2C-like phosphatases
SUTH_02883	SM00448	cheY-homologous receiver domain
SUTH_02884	SM00448	cheY-homologous receiver domain
SUTH_02885	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02885	SM00387	Histidine kinase-like ATPases
SUTH_02885	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02885	SM01079	SUTH_02885
SUTH_02891	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02891	SM00091	PAS domain
SUTH_02891	SM00387	Histidine kinase-like ATPases
SUTH_02891	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_02891	SM00448	cheY-homologous receiver domain
SUTH_02892	SM00448	cheY-homologous receiver domain
SUTH_02892	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_02893	SM00448	cheY-homologous receiver domain
SUTH_02900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SUTH_02900	SM00895	SUTH_02900
SUTH_02908	SM00910	SUTH_02908
SUTH_02910	SM00749	bacterial OsmY and nodulation domain
SUTH_02924	SM00014	Acid phosphatase homologues
SUTH_02926	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
SUTH_02926	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
SUTH_02937	SM00867	YceI-like domain 
SUTH_02938	SM00867	YceI-like domain 
SUTH_02944	SM00052	Putative diguanylate phosphodiesterase
SUTH_02944	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02944	SM00091	PAS domain
SUTH_02944	SM00267	diguanylate cyclase
SUTH_02952	SM00966	SpoVT / AbrB like domain 
SUTH_02961	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_02961	SM00267	diguanylate cyclase
SUTH_02964	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_02968	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_02968	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_02969	SM01049	SUTH_02969
SUTH_02973	SM00267	diguanylate cyclase
SUTH_02973	SM00448	cheY-homologous receiver domain
SUTH_02976	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_02976	SM00671	Sel1-like repeats.
SUTH_02979	SM00861	Transketolase, pyrimidine binding domain
SUTH_02984	SM00829	Enoylreductase
SUTH_02990	SM01001	AIR carboxylase
SUTH_02999	SM00919	Malic enzyme, NAD binding domain
SUTH_02999	SM01274	SUTH_02999
SUTH_03004	SM00644	SUTH_03004
SUTH_03005	SM00382	ATPases associated with a variety of cellular activities
SUTH_03005	SM00448	cheY-homologous receiver domain
SUTH_03006	SM00387	Histidine kinase-like ATPases
SUTH_03006	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03010	SM00448	cheY-homologous receiver domain
SUTH_03010	SM00850	LytTr DNA-binding domain
SUTH_03013	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_03013	SM00220	Serine/Threonine protein kinases, catalytic domain
SUTH_03020	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_03031	SM00267	diguanylate cyclase
SUTH_03033	SM00052	Putative diguanylate phosphodiesterase
SUTH_03033	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_03033	SM00091	PAS domain
SUTH_03033	SM00267	diguanylate cyclase
SUTH_03037	SM00091	PAS domain
SUTH_03037	SM00267	diguanylate cyclase
SUTH_03040	SM00966	SpoVT / AbrB like domain 
SUTH_03045	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_03045	SM00267	diguanylate cyclase
SUTH_03046	SM00852	Probable molybdopterin binding domain
SUTH_03048	SM00382	ATPases associated with a variety of cellular activities
SUTH_03048	SM00487	DEAD-like helicases superfamily
SUTH_03048	SM00490	helicase superfamily c-terminal domain
SUTH_03048	SM00847	Helicase associated domain (HA2)  Add an annotation
SUTH_03055	SM00052	Putative diguanylate phosphodiesterase
SUTH_03055	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_03055	SM00091	PAS domain
SUTH_03055	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_03055	SM00267	diguanylate cyclase
SUTH_03056	SM00073	Histidine Phosphotransfer domain
SUTH_03058	SM00028	Tetratricopeptide repeats
SUTH_03058	SM00448	cheY-homologous receiver domain
SUTH_03059	SM00387	Histidine kinase-like ATPases
SUTH_03060	SM01007	Class II Aldolase and Adducin N-terminal domain
SUTH_03062	SM00957	SecA DEAD-like domain
SUTH_03062	SM00958	SecA preprotein cross-linking domain
SUTH_03067	SM00864	Tubulin/FtsZ family, GTPase domain
SUTH_03067	SM00865	Tubulin/FtsZ family, C-terminal domain
SUTH_03068	SM00842	Cell division protein FtsA
SUTH_03093	SM00831	Cation transporter/ATPase, N-terminus
SUTH_03094	SM00052	Putative diguanylate phosphodiesterase
SUTH_03094	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_03094	SM00091	PAS domain
SUTH_03094	SM00267	diguanylate cyclase
SUTH_03099	SM00346	helix_turn_helix isocitrate lyase regulation
SUTH_03103	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
SUTH_03105	SM00966	SpoVT / AbrB like domain 
SUTH_03106	SM01321	SUTH_03106
SUTH_03115	SM00363	S4 RNA-binding domain
SUTH_03121	SM00859	Semialdehyde dehydrogenase, NAD binding domain
SUTH_03127	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_03130	SM00116	Domain in cystathionine beta-synthase and other proteins.
SUTH_03130	SM01091	Transporter associated domain
SUTH_03136	SM00563	Phosphate acyltransferases
SUTH_03148	SM00387	Histidine kinase-like ATPases
SUTH_03148	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03148	SM00448	cheY-homologous receiver domain
SUTH_03150	SM00448	cheY-homologous receiver domain
SUTH_03150	SM00862	Transcriptional regulatory protein, C terminal
SUTH_03151	SM00387	Histidine kinase-like ATPases
SUTH_03151	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03153	SM00671	Sel1-like repeats.
SUTH_03157	SM00487	DEAD-like helicases superfamily
SUTH_03157	SM00490	helicase superfamily c-terminal domain
SUTH_03164	SM00852	Probable molybdopterin binding domain
SUTH_03165	SM00382	ATPases associated with a variety of cellular activities
SUTH_03171	SM00642	Alpha-amylase domain
SUTH_03186	SM00670	Large family of predicted nucleotide-binding domains
SUTH_03188	SM00387	Histidine kinase-like ATPases
SUTH_03188	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03196	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_03196	SM01080	SUTH_03196
SUTH_03198	SM01080	SUTH_03198
SUTH_03206	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
SUTH_03207	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_03209	SM00481	DNA polymerase alpha chain like domain
SUTH_03212	SM00829	Enoylreductase
SUTH_03213	SM00919	Malic enzyme, NAD binding domain
SUTH_03213	SM01274	SUTH_03213
SUTH_03214	SM00052	Putative diguanylate phosphodiesterase
SUTH_03214	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
SUTH_03214	SM00267	diguanylate cyclase
SUTH_03214	SM00448	cheY-homologous receiver domain
SUTH_03215	SM00421	helix_turn_helix, Lux Regulon
SUTH_03215	SM00448	cheY-homologous receiver domain
SUTH_03216	SM00387	Histidine kinase-like ATPases
SUTH_03221	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_03234	SM00267	diguanylate cyclase
SUTH_03238	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_03239	SM00052	Putative diguanylate phosphodiesterase
SUTH_03239	SM00267	diguanylate cyclase
SUTH_03240	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_03249	SM00905	Dihydroneopterin aldolase
SUTH_03250	SM01207	SUTH_03250
SUTH_03252	SM00100	Cyclic nucleotide-monophosphate binding domain
SUTH_03255	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_03256	SM01359	SUTH_03256
SUTH_03256	SM01360	SUTH_03256
SUTH_03265	SM00400	zinc finger
SUTH_03265	SM00493	SUTH_03265
SUTH_03265	SM00766	DNA primase DnaG DnaB-binding
SUTH_03270	SM00465	GIY-YIG type nucleases (URI domain)
SUTH_03270	SM00479	SUTH_03270
SUTH_03271	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_03273	SM00996	S-adenosyl-L-homocysteine hydrolase
SUTH_03273	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
SUTH_03276	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_03276	SM00387	Histidine kinase-like ATPases
SUTH_03276	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03276	SM00448	cheY-homologous receiver domain
SUTH_03287	SM00278	Helix-hairpin-helix DNA-binding motif class 1
SUTH_03288	SM00382	ATPases associated with a variety of cellular activities
SUTH_03300	SM00881	CoA binding domain
SUTH_03303	SM00091	PAS domain
SUTH_03307	SM01400	SUTH_03307
SUTH_03311	SM00028	Tetratricopeptide repeats
SUTH_03312	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
SUTH_03312	SM01232	SUTH_03312
SUTH_03318	SM00382	ATPases associated with a variety of cellular activities
SUTH_03318	SM00962	SRP54-type protein, GTPase domain
SUTH_03318	SM00963	SRP54-type protein, helical bundle domain
SUTH_03319	SM00382	ATPases associated with a variety of cellular activities
SUTH_03336	SM00878	Biotin carboxylase C-terminal domain
SUTH_03354	SM00729	Elongator protein 3, MiaB family, Radical SAM
SUTH_03376	SM00858	SUTH_03376
SUTH_03380	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
SUTH_03397	SM00450	Rhodanese Homology Domain
SUTH_03402	SM01240	SUTH_03402
SUTH_03404	SM01057	Eukaryotic-type carbonic anhydrase
SUTH_03406	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
SUTH_03411	SM00955	SUTH_03411
SUTH_03420	SM00448	cheY-homologous receiver domain
SUTH_03421	SM00448	cheY-homologous receiver domain
SUTH_03423	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
SUTH_03424	SM00073	Histidine Phosphotransfer domain
SUTH_03424	SM00260	Two component signalling adaptor domain
SUTH_03424	SM00387	Histidine kinase-like ATPases
SUTH_03424	SM00448	cheY-homologous receiver domain
SUTH_03424	SM01231	SUTH_03424
SUTH_03426	SM00267	diguanylate cyclase
SUTH_03433	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_03433	SM00387	Histidine kinase-like ATPases
SUTH_03433	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03434	SM00448	cheY-homologous receiver domain
SUTH_03434	SM00862	Transcriptional regulatory protein, C terminal
SUTH_03443	SM00450	Rhodanese Homology Domain
SUTH_03444	SM00878	Biotin carboxylase C-terminal domain
SUTH_03448	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SUTH_03448	SM00895	SUTH_03448
SUTH_03453	SM00912	haemagglutination activity domain
SUTH_03455	SM00912	haemagglutination activity domain
SUTH_03467	SM00382	ATPases associated with a variety of cellular activities
SUTH_03469	SM00382	ATPases associated with a variety of cellular activities
SUTH_03480	SM00382	ATPases associated with a variety of cellular activities
SUTH_03482	SM00382	ATPases associated with a variety of cellular activities
SUTH_03485	SM00563	Phosphate acyltransferases
SUTH_03486	SM00382	ATPases associated with a variety of cellular activities
SUTH_03492	SM00448	cheY-homologous receiver domain
SUTH_03504	SM00530	Helix-turn-helix XRE-family like proteins 
SUTH_03517	SM00382	ATPases associated with a variety of cellular activities
SUTH_03525	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
SUTH_03525	SM00474	3'-5' exonuclease
SUTH_03525	SM00475	5'-3' exonuclease
SUTH_03525	SM00482	DNA polymerase A domain
SUTH_03526	SM00382	ATPases associated with a variety of cellular activities
SUTH_03542	SM00052	Putative diguanylate phosphodiesterase
SUTH_03548	SM00563	Phosphate acyltransferases
SUTH_03554	SM00345	helix_turn_helix gluconate operon transcriptional repressor
SUTH_03554	SM00895	SUTH_03554
SUTH_03563	SM00052	Putative diguanylate phosphodiesterase
SUTH_03563	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_03563	SM00091	PAS domain
SUTH_03563	SM00267	diguanylate cyclase
SUTH_03563	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
SUTH_03564	SM00450	Rhodanese Homology Domain
SUTH_03565	SM00450	Rhodanese Homology Domain
SUTH_03566	SM01018	B12 binding domain
SUTH_03577	SM00052	Putative diguanylate phosphodiesterase
SUTH_03577	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
SUTH_03577	SM00091	PAS domain
SUTH_03577	SM00267	diguanylate cyclase
SUTH_03590	SM00320	WD40 repeats
SUTH_03595	SM00869	Autotransporter beta-domain
SUTH_03597	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
SUTH_03597	SM01080	SUTH_03597
SUTH_03607	SM00387	Histidine kinase-like ATPases
SUTH_03607	SM00388	His Kinase A (phosphoacceptor) domain
SUTH_03608	SM00448	cheY-homologous receiver domain
SUTH_03608	SM00862	Transcriptional regulatory protein, C terminal
SUTH_03611	SM00978	SUTH_03611
SUTH_03620	SM00382	ATPases associated with a variety of cellular activities
SUTH_03628	SM00470	ParB-like nuclease domain
SUTH_03631	SM01228	SUTH_03631
SUTH_03635	SM01234	SUTH_03635
