locus-tag class description SHALO_0001 PF08299 Bacterial dnaA protein helix-turn-helix SHALO_0001 PF11638 DnaA N-terminal domain SHALO_0001 PF00308 Bacterial dnaA protein SHALO_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SHALO_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SHALO_0002 PF02767 DNA polymerase III beta subunit, central domain SHALO_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0003 PF00986 DNA gyrase B subunit, carboxyl terminus SHALO_0003 PF01751 Toprim domain SHALO_0003 PF00204 DNA gyrase B SHALO_0004 PF00563 EAL domain SHALO_0005 PF14489 QueF-like protein SHALO_0008 PF03167 Uracil DNA glycosylase superfamily SHALO_0009 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_0009 PF14815 NUDIX domain SHALO_0009 PF00633 Helix-hairpin-helix motif SHALO_0010 PF00571 CBS domain SHALO_0010 PF00005 ABC transporter SHALO_0011 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0012 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SHALO_0013 PF07690 Major Facilitator Superfamily SHALO_0014 PF05681 Fumarate hydratase (Fumerase) SHALO_0015 PF05683 Fumarase C-terminus SHALO_0017 PF00330 Aconitase family (aconitate hydratase) SHALO_0018 PF00694 Aconitase C-terminal domain SHALO_0022 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0027 PF06826 Predicted Permease Membrane Region SHALO_0027 PF02080 TrkA-C domain SHALO_0030 PF00072 Response regulator receiver domain SHALO_0030 PF00486 Transcriptional regulatory protein, C terminal SHALO_0031 PF05935 Arylsulfotransferase (ASST) SHALO_0031 PF17425 Arylsulfotransferase Ig-like domain SHALO_0032 PF02743 Cache domain SHALO_0032 PF00672 HAMP domain SHALO_0032 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0033 PF02600 Disulfide bond formation protein DsbB SHALO_0034 PF01323 DSBA-like thioredoxin domain SHALO_0036 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_0036 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_0037 PF00857 Isochorismatase family SHALO_0038 PF00440 Bacterial regulatory proteins, tetR family SHALO_0038 PF16925 Tetracyclin repressor-like, C-terminal domain SHALO_0040 PF12833 Helix-turn-helix domain SHALO_0040 PF06445 GyrI-like small molecule binding domain SHALO_0041 PF08241 Methyltransferase domain SHALO_0043 PF01875 Memo-like protein SHALO_0047 PF07883 Cupin domain SHALO_0047 PF12833 Helix-turn-helix domain SHALO_0049 PF05728 Uncharacterised protein family (UPF0227) SHALO_0050 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_0050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SHALO_0052 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0052 PF01568 Molydopterin dinucleotide binding domain SHALO_0052 PF00384 Molybdopterin oxidoreductase SHALO_0053 PF02899 Phage integrase, N-terminal SAM-like domain SHALO_0053 PF00589 Phage integrase family SHALO_0059 PF00145 C-5 cytosine-specific DNA methylase SHALO_0060 PF07517 SecA DEAD-like domain SHALO_0060 PF01043 SecA preprotein cross-linking domain SHALO_0060 PF07516 SecA Wing and Scaffold domain SHALO_0060 PF02810 SEC-C motif SHALO_0061 PF18543 Intracellular delivery domain SHALO_0061 PF02661 Fic/DOC family SHALO_0076 PF18272 single-stranded DNA binding TraI N-terminal subdomain SHALO_0076 PF07057 DNA helicase TraI SHALO_0076 PF18340 DNA relaxase TraI 2B/2B-like domain SHALO_0076 PF08751 TrwC relaxase SHALO_0084 PF00920 Dehydratase family SHALO_0085 PF01914 MarC family integral membrane protein SHALO_0087 PF13426 PAS domain SHALO_0087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0087 PF08447 PAS fold SHALO_0088 PF00483 Nucleotidyl transferase SHALO_0089 PF06418 CTP synthase N-terminus SHALO_0089 PF00117 Glutamine amidotransferase class-I SHALO_0090 PF17768 RecJ OB domain SHALO_0090 PF02272 DHHA1 domain SHALO_0090 PF01368 DHH family SHALO_0092 PF00795 Carbon-nitrogen hydrolase SHALO_0093 PF00268 Ribonucleotide reductase, small chain SHALO_0095 PF04055 Radical SAM superfamily SHALO_0096 PF03477 ATP cone domain SHALO_0096 PF13597 Anaerobic ribonucleoside-triphosphate reductase SHALO_0097 PF01177 Asp/Glu/Hydantoin racemase SHALO_0098 PF03477 ATP cone domain SHALO_0098 PF02867 Ribonucleotide reductase, barrel domain SHALO_0098 PF00317 Ribonucleotide reductase, all-alpha domain SHALO_0099 PF00206 Lyase SHALO_0099 PF10397 Adenylosuccinate lyase C-terminus SHALO_0100 PF00849 RNA pseudouridylate synthase SHALO_0101 PF01557 Fumarylacetoacetate (FAA) hydrolase family SHALO_0102 PF04055 Radical SAM superfamily SHALO_0104 PF00977 Histidine biosynthesis protein SHALO_0105 PF00398 Ribosomal RNA adenine dimethylase SHALO_0106 PF00753 Metallo-beta-lactamase superfamily SHALO_0106 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SHALO_0106 PF17770 Ribonuclease J C-terminal domain SHALO_0107 PF01380 SIS domain SHALO_0107 PF00571 CBS domain SHALO_0108 PF01479 S4 domain SHALO_0108 PF00849 RNA pseudouridylate synthase SHALO_0109 PF05496 Holliday junction DNA helicase RuvB P-loop domain SHALO_0109 PF16193 AAA C-terminal domain SHALO_0109 PF01661 Macro domain SHALO_0109 PF12002 MgsA AAA+ ATPase C terminal SHALO_0111 PF01312 FlhB HrpN YscU SpaS Family SHALO_0113 PF02769 AIR synthase related protein, C-terminal domain SHALO_0113 PF00586 AIR synthase related protein, N-terminal domain SHALO_0114 PF01121 Dephospho-CoA kinase SHALO_0115 PF01678 Diaminopimelate epimerase SHALO_0117 PF03462 PCRF domain SHALO_0117 PF00472 RF-1 domain SHALO_0118 PF01649 Ribosomal protein S20 SHALO_0121 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SHALO_0121 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SHALO_0121 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SHALO_0121 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SHALO_0122 PF01252 Signal peptidase (SPase) II SHALO_0124 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_0124 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_0124 PF03129 Anticodon binding domain SHALO_0125 PF05198 Translation initiation factor IF-3, N-terminal domain SHALO_0125 PF00707 Translation initiation factor IF-3, C-terminal domain SHALO_0126 PF01632 Ribosomal protein L35 SHALO_0127 PF00453 Ribosomal protein L20 SHALO_0128 PF13746 4Fe-4S dicluster domain SHALO_0128 PF12801 4Fe-4S binding domain SHALO_0128 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SHALO_0130 PF01165 Ribosomal protein S21 SHALO_0133 PF03738 Glutathionylspermidine synthase preATP-grasp SHALO_0134 PF04461 Protein of unknown function (DUF520) SHALO_0136 PF01219 Prokaryotic diacylglycerol kinase SHALO_0137 PF01274 Malate synthase SHALO_0142 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0142 PF00672 HAMP domain SHALO_0142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0142 PF13426 PAS domain SHALO_0143 PF00486 Transcriptional regulatory protein, C terminal SHALO_0143 PF00072 Response regulator receiver domain SHALO_0146 PF02470 MlaD protein SHALO_0147 PF00005 ABC transporter SHALO_0148 PF02405 Permease MlaE SHALO_0149 PF01625 Peptide methionine sulfoxide reductase SHALO_0150 PF01914 MarC family integral membrane protein SHALO_0151 PF16591 Helical bimodular sensor domain SHALO_0151 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0151 PF00672 HAMP domain SHALO_0153 PF11849 Domain of unknown function (DUF3369) SHALO_0157 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0158 PF00072 Response regulator receiver domain SHALO_0158 PF00486 Transcriptional regulatory protein, C terminal SHALO_0159 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SHALO_0160 PF00543 Nitrogen regulatory protein P-II SHALO_0161 PF00909 Ammonium Transporter Family SHALO_0162 PF00248 Aldo/keto reductase family SHALO_0164 PF00486 Transcriptional regulatory protein, C terminal SHALO_0164 PF00072 Response regulator receiver domain SHALO_0167 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0168 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_0169 PF00005 ABC transporter SHALO_0173 PF00950 ABC 3 transport family SHALO_0174 PF00005 ABC transporter SHALO_0178 PF01261 Xylose isomerase-like TIM barrel SHALO_0180 PF00501 AMP-binding enzyme SHALO_0180 PF13193 AMP-binding enzyme C-terminal domain SHALO_0181 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_0181 PF17862 AAA+ lid domain SHALO_0181 PF01434 Peptidase family M41 SHALO_0181 PF06480 FtsH Extracellular SHALO_0182 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SHALO_0183 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_0184 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_0185 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_0188 PF13237 4Fe-4S dicluster domain SHALO_0188 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_0188 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0188 PF00384 Molybdopterin oxidoreductase SHALO_0188 PF01568 Molydopterin dinucleotide binding domain SHALO_0189 PF00146 NADH dehydrogenase SHALO_0190 PF12838 4Fe-4S dicluster domain SHALO_0191 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SHALO_0192 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_0193 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_0193 PF00361 Proton-conducting membrane transporter SHALO_0194 PF00361 Proton-conducting membrane transporter SHALO_0195 PF00361 Proton-conducting membrane transporter SHALO_0197 PF00171 Aldehyde dehydrogenase family SHALO_0202 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0202 PF16591 Helical bimodular sensor domain SHALO_0202 PF00672 HAMP domain SHALO_0204 PF04055 Radical SAM superfamily SHALO_0204 PF06463 Molybdenum Cofactor Synthesis C SHALO_0205 PF18146 Damage-inducible protein CinA KH domain SHALO_0205 PF02464 Competence-damaged protein SHALO_0205 PF00994 Probable molybdopterin binding domain SHALO_0207 PF04452 RNA methyltransferase SHALO_0208 PF01197 Ribosomal protein L31 SHALO_0209 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_0210 PF08032 RNA 2'-O ribose methyltransferase substrate binding SHALO_0210 PF00588 SpoU rRNA Methylase family SHALO_0213 PF00155 Aminotransferase class I and II SHALO_0214 PF01842 ACT domain SHALO_0214 PF03447 Homoserine dehydrogenase, NAD binding domain SHALO_0214 PF00742 Homoserine dehydrogenase SHALO_0215 PF02021 Uncharacterised protein family UPF0102 SHALO_0216 PF00085 Thioredoxin SHALO_0217 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_0218 PF05173 Dihydrodipicolinate reductase, C-terminus SHALO_0218 PF01113 Dihydrodipicolinate reductase, N-terminus SHALO_0219 PF00156 Phosphoribosyl transferase domain SHALO_0220 PF16199 Radical_SAM C-terminal domain SHALO_0220 PF04055 Radical SAM superfamily SHALO_0223 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SHALO_0223 PF01502 Phosphoribosyl-AMP cyclohydrolase SHALO_0225 PF01063 Amino-transferase class IV SHALO_0226 PF00171 Aldehyde dehydrogenase family SHALO_0227 PF00578 AhpC/TSA family SHALO_0229 PF02677 Epoxyqueuosine reductase QueH SHALO_0230 PF07977 FabA-like domain SHALO_0231 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_0231 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SHALO_0232 PF07724 AAA domain (Cdc48 subfamily) SHALO_0232 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_0232 PF06689 ClpX C4-type zinc finger SHALO_0235 PF02142 MGS-like domain SHALO_0235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SHALO_0235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_0240 PF00899 ThiF family SHALO_0241 PF01975 Survival protein SurE SHALO_0242 PF02684 Lipid-A-disaccharide synthetase SHALO_0243 PF03449 Transcription elongation factor, N-terminal SHALO_0243 PF01272 Transcription elongation factor, GreA/GreB, C-term SHALO_0244 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_0244 PF02774 Semialdehyde dehydrogenase, dimerisation domain SHALO_0246 PF00072 Response regulator receiver domain SHALO_0246 PF01584 CheW-like domain SHALO_0247 PF01584 CheW-like domain SHALO_0247 PF02895 Signal transducing histidine kinase, homodimeric domain SHALO_0247 PF01627 Hpt domain SHALO_0247 PF07194 P2 response regulator binding domain SHALO_0247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0248 PF01584 CheW-like domain SHALO_0251 PF00923 Transaldolase/Fructose-6-phosphate aldolase SHALO_0252 PF00437 Type II/IV secretion system protein SHALO_0253 PF01386 Ribosomal L25p family SHALO_0253 PF14693 Ribosomal protein TL5, C-terminal domain SHALO_0254 PF01195 Peptidyl-tRNA hydrolase SHALO_0256 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SHALO_0256 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SHALO_0257 PF00800 Prephenate dehydratase SHALO_0257 PF01842 ACT domain SHALO_0257 PF01817 Chorismate mutase type II SHALO_0258 PF00155 Aminotransferase class I and II SHALO_0259 PF08345 Flagellar M-ring protein C-terminal SHALO_0259 PF01514 Secretory protein of YscJ/FliF family SHALO_0260 PF14842 FliG N-terminal domain SHALO_0260 PF01706 FliG C-terminal domain SHALO_0260 PF14841 FliG middle domain SHALO_0262 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_0262 PF13359 DDE superfamily endonuclease SHALO_0263 PF13359 DDE superfamily endonuclease SHALO_0263 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_0265 PF02780 Transketolase, C-terminal domain SHALO_0265 PF02779 Transketolase, pyrimidine binding domain SHALO_0265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SHALO_0267 PF00578 AhpC/TSA family SHALO_0267 PF10417 C-terminal domain of 1-Cys peroxiredoxin SHALO_0268 PF02743 Cache domain SHALO_0268 PF00672 HAMP domain SHALO_0268 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0269 PF00037 4Fe-4S binding domain SHALO_0270 PF00334 Nucleoside diphosphate kinase SHALO_0272 PF01783 Ribosomal L32p protein family SHALO_0273 PF02504 Fatty acid synthesis protein SHALO_0274 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SHALO_0274 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SHALO_0275 PF02153 Prephenate dehydrogenase SHALO_0275 PF01842 ACT domain SHALO_0276 PF01103 Surface antigen SHALO_0276 PF07244 Surface antigen variable number repeat SHALO_0277 PF02541 Ppx/GppA phosphatase family SHALO_0278 PF00037 4Fe-4S binding domain SHALO_0279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0279 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0280 PF00486 Transcriptional regulatory protein, C terminal SHALO_0280 PF00072 Response regulator receiver domain SHALO_0282 PF02660 Glycerol-3-phosphate acyltransferase SHALO_0283 PF02445 Quinolinate synthetase A protein SHALO_0284 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SHALO_0284 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SHALO_0285 PF01312 FlhB HrpN YscU SpaS Family SHALO_0287 PF01551 Peptidase family M23 SHALO_0287 PF01476 LysM domain SHALO_0288 PF03775 Septum formation inhibitor MinC, C-terminal domain SHALO_0289 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SHALO_0291 PF08544 GHMP kinases C terminal SHALO_0291 PF00288 GHMP kinases N terminal domain SHALO_0293 PF04760 Translation initiation factor IF-2, N-terminal region SHALO_0293 PF11987 Translation-initiation factor 2 SHALO_0293 PF00009 Elongation factor Tu GTP binding domain SHALO_0294 PF02033 Ribosome-binding factor A SHALO_0295 PF02576 RimP N-terminal domain SHALO_0295 PF17384 RimP C-terminal SH3 domain SHALO_0296 PF01872 RibD C-terminal domain SHALO_0296 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SHALO_0298 PF08448 PAS fold SHALO_0298 PF00563 EAL domain SHALO_0298 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0298 PF08447 PAS fold SHALO_0299 PF00313 'Cold-shock' DNA-binding domain SHALO_0300 PF13426 PAS domain SHALO_0300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0300 PF00672 HAMP domain SHALO_0300 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0301 PF00486 Transcriptional regulatory protein, C terminal SHALO_0301 PF00072 Response regulator receiver domain SHALO_0303 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_0307 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0307 PF00384 Molybdopterin oxidoreductase SHALO_0307 PF01568 Molydopterin dinucleotide binding domain SHALO_0307 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_0308 PF13247 4Fe-4S dicluster domain SHALO_0309 PF03916 Polysulphide reductase, NrfD SHALO_0310 PF08495 FIST N domain SHALO_0310 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0310 PF10442 FIST C domain SHALO_0310 PF00563 EAL domain SHALO_0311 PF01568 Molydopterin dinucleotide binding domain SHALO_0311 PF00384 Molybdopterin oxidoreductase SHALO_0311 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0312 PF13247 4Fe-4S dicluster domain SHALO_0313 PF03916 Polysulphide reductase, NrfD SHALO_0314 PF00486 Transcriptional regulatory protein, C terminal SHALO_0314 PF00072 Response regulator receiver domain SHALO_0315 PF13426 PAS domain SHALO_0315 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0315 PF00672 HAMP domain SHALO_0317 PF06969 HemN C-terminal domain SHALO_0317 PF04055 Radical SAM superfamily SHALO_0319 PF02833 DHHA2 domain SHALO_0319 PF01368 DHH family SHALO_0322 PF01209 ubiE/COQ5 methyltransferase family SHALO_0323 PF02601 Exonuclease VII, large subunit SHALO_0323 PF13742 OB-fold nucleic acid binding domain SHALO_0325 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0326 PF00563 EAL domain SHALO_0326 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0326 PF03707 Bacterial signalling protein N terminal repeat SHALO_0327 PF00962 Adenosine/AMP deaminase SHALO_0329 PF12833 Helix-turn-helix domain SHALO_0329 PF06719 AraC-type transcriptional regulator N-terminus SHALO_0330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_0331 PF03466 LysR substrate binding domain SHALO_0331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_0332 PF03601 Conserved hypothetical protein 698 SHALO_0335 PF07722 Peptidase C26 SHALO_0336 PF00593 TonB dependent receptor SHALO_0336 PF07715 TonB-dependent Receptor Plug Domain SHALO_0339 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0340 PF00005 ABC transporter SHALO_0346 PF00005 ABC transporter SHALO_0346 PF02687 FtsX-like permease family SHALO_0346 PF12704 MacB-like periplasmic core domain SHALO_0350 PF00005 ABC transporter SHALO_0351 PF12801 4Fe-4S binding domain SHALO_0351 PF13237 4Fe-4S dicluster domain SHALO_0354 PF12838 4Fe-4S dicluster domain SHALO_0357 PF18764 Nitrous oxide reductase propeller repeat SHALO_0357 PF18793 Nitrous oxide reductase propeller repeat 2 SHALO_0357 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SHALO_0358 PF00989 PAS fold SHALO_0358 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0359 PF00072 Response regulator receiver domain SHALO_0359 PF12833 Helix-turn-helix domain SHALO_0360 PF00034 Cytochrome c SHALO_0361 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_0361 PF00355 Rieske [2Fe-2S] domain SHALO_0362 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_0362 PF00033 Cytochrome b/b6/petB SHALO_0372 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SHALO_0372 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_0373 PF02163 Peptidase family M50 SHALO_0374 PF01979 Amidohydrolase family SHALO_0375 PF01220 Dehydroquinase class II SHALO_0376 PF01321 Creatinase/Prolidase N-terminal domain SHALO_0376 PF00557 Metallopeptidase family M24 SHALO_0377 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SHALO_0378 PF00448 SRP54-type protein, GTPase domain SHALO_0379 PF10609 NUBPL iron-transfer P-loop NTPase SHALO_0381 PF04542 Sigma-70 region 2 SHALO_0381 PF04545 Sigma-70, region 4 SHALO_0381 PF04539 Sigma-70 region 3 SHALO_0382 PF02154 Flagellar motor switch protein FliM SHALO_0382 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SHALO_0383 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SHALO_0383 PF04509 CheC-like family SHALO_0384 PF03641 Possible lysine decarboxylase SHALO_0386 PF00535 Glycosyl transferase family 2 SHALO_0387 PF08889 WbqC-like protein family SHALO_0388 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_0389 PF00892 EamA-like transporter family SHALO_0392 PF14572 Phosphoribosyl synthetase-associated domain SHALO_0392 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SHALO_0393 PF00009 Elongation factor Tu GTP binding domain SHALO_0393 PF06421 GTP-binding protein LepA C-terminus SHALO_0393 PF03144 Elongation factor Tu domain 2 SHALO_0393 PF00679 Elongation factor G C-terminus SHALO_0394 PF00156 Phosphoribosyl transferase domain SHALO_0397 PF00521 DNA gyrase/topoisomerase IV, subunit A SHALO_0397 PF03989 DNA gyrase C-terminal domain, beta-propeller SHALO_0400 PF02954 Bacterial regulatory protein, Fis family SHALO_0400 PF00158 Sigma-54 interaction domain SHALO_0400 PF00072 Response regulator receiver domain SHALO_0401 PF02774 Semialdehyde dehydrogenase, dimerisation domain SHALO_0401 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_0403 PF01208 Uroporphyrinogen decarboxylase (URO-D) SHALO_0404 PF04055 Radical SAM superfamily SHALO_0406 PF16868 NMT1-like family SHALO_0408 PF13356 Arm DNA-binding domain SHALO_0408 PF00589 Phage integrase family SHALO_0409 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0409 PF13426 PAS domain SHALO_0409 PF00672 HAMP domain SHALO_0409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0412 PF12161 HsdM N-terminal domain SHALO_0412 PF02384 N-6 DNA Methylase SHALO_0418 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SHALO_0418 PF06594 Haemolysin-type calcium binding protein related domain SHALO_0420 PF00664 ABC transporter transmembrane region SHALO_0420 PF00005 ABC transporter SHALO_0420 PF03412 Peptidase C39 family SHALO_0422 PF02796 Helix-turn-helix domain of resolvase SHALO_0422 PF00239 Resolvase, N terminal domain SHALO_0429 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SHALO_0435 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SHALO_0435 PF09364 XFP N-terminal domain SHALO_0435 PF09363 XFP C-terminal domain SHALO_0438 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SHALO_0439 PF01965 DJ-1/PfpI family SHALO_0445 PF00563 EAL domain SHALO_0445 PF10442 FIST C domain SHALO_0445 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0445 PF08495 FIST N domain SHALO_0448 PF00085 Thioredoxin SHALO_0455 PF09905 DNA-binding protein VF530 SHALO_0456 PF00106 short chain dehydrogenase SHALO_0459 PF13458 Periplasmic binding protein SHALO_0460 PF02653 Branched-chain amino acid transport system / permease component SHALO_0461 PF02653 Branched-chain amino acid transport system / permease component SHALO_0461 PF11862 Domain of unknown function (DUF3382) SHALO_0462 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_0462 PF00005 ABC transporter SHALO_0463 PF00005 ABC transporter SHALO_0464 PF00171 Aldehyde dehydrogenase family SHALO_0466 PF03883 Peroxide stress protein YaaA SHALO_0471 PF03144 Elongation factor Tu domain 2 SHALO_0471 PF03143 Elongation factor Tu C-terminal domain SHALO_0471 PF00009 Elongation factor Tu GTP binding domain SHALO_0474 PF02357 Transcription termination factor nusG SHALO_0475 PF03946 Ribosomal protein L11, N-terminal domain SHALO_0475 PF00298 Ribosomal protein L11, RNA binding domain SHALO_0476 PF00687 Ribosomal protein L1p/L10e family SHALO_0477 PF00466 Ribosomal protein L10 SHALO_0478 PF00542 Ribosomal protein L7/L12 C-terminal domain SHALO_0478 PF16320 Ribosomal protein L7/L12 dimerisation domain SHALO_0479 PF10385 RNA polymerase beta subunit external 1 domain SHALO_0479 PF04561 RNA polymerase Rpb2, domain 2 SHALO_0479 PF04563 RNA polymerase beta subunit SHALO_0479 PF00562 RNA polymerase Rpb2, domain 6 SHALO_0479 PF04560 RNA polymerase Rpb2, domain 7 SHALO_0479 PF04565 RNA polymerase Rpb2, domain 3 SHALO_0480 PF04997 RNA polymerase Rpb1, domain 1 SHALO_0480 PF00623 RNA polymerase Rpb1, domain 2 SHALO_0480 PF04983 RNA polymerase Rpb1, domain 3 SHALO_0480 PF05000 RNA polymerase Rpb1, domain 4 SHALO_0480 PF04998 RNA polymerase Rpb1, domain 5 SHALO_0481 PF00164 Ribosomal protein S12/S23 SHALO_0482 PF00177 Ribosomal protein S7p/S5e SHALO_0483 PF03764 Elongation factor G, domain IV SHALO_0483 PF00009 Elongation factor Tu GTP binding domain SHALO_0483 PF03144 Elongation factor Tu domain 2 SHALO_0483 PF00679 Elongation factor G C-terminus SHALO_0483 PF14492 Elongation Factor G, domain II SHALO_0484 PF09383 NIL domain SHALO_0484 PF00005 ABC transporter SHALO_0485 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0486 PF03180 NLPA lipoprotein SHALO_0488 PF01037 Lrp/AsnC ligand binding domain SHALO_0489 PF00892 EamA-like transporter family SHALO_0493 PF01568 Molydopterin dinucleotide binding domain SHALO_0493 PF18364 Molybdopterin oxidoreductase N-terminal domain SHALO_0493 PF00384 Molybdopterin oxidoreductase SHALO_0495 PF00072 Response regulator receiver domain SHALO_0495 PF00486 Transcriptional regulatory protein, C terminal SHALO_0496 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_0497 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0498 PF00672 HAMP domain SHALO_0498 PF02743 Cache domain SHALO_0499 PF08447 PAS fold SHALO_0499 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0501 PF00384 Molybdopterin oxidoreductase SHALO_0501 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0501 PF01568 Molydopterin dinucleotide binding domain SHALO_0501 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_0502 PF00146 NADH dehydrogenase SHALO_0503 PF12838 4Fe-4S dicluster domain SHALO_0504 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SHALO_0505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_0506 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_0506 PF00361 Proton-conducting membrane transporter SHALO_0507 PF00361 Proton-conducting membrane transporter SHALO_0508 PF00361 Proton-conducting membrane transporter SHALO_0510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SHALO_0510 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SHALO_0510 PF10531 SLBB domain SHALO_0512 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_0512 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_0513 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_0514 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SHALO_0517 PF00842 Alanine racemase, C-terminal domain SHALO_0517 PF01168 Alanine racemase, N-terminal domain SHALO_0521 PF02527 rRNA small subunit methyltransferase G SHALO_0522 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SHALO_0522 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SHALO_0523 PF01741 Large-conductance mechanosensitive channel, MscL SHALO_0525 PF00925 GTP cyclohydrolase II SHALO_0526 PF00490 Delta-aminolevulinic acid dehydratase SHALO_0527 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SHALO_0527 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SHALO_0528 PF10788 Protein of unknown function (DUF2603) SHALO_0529 PF06969 HemN C-terminal domain SHALO_0529 PF04055 Radical SAM superfamily SHALO_0530 PF02754 Cysteine-rich domain SHALO_0535 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SHALO_0536 PF08448 PAS fold SHALO_0536 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0537 PF07690 Major Facilitator Superfamily SHALO_0538 PF02810 SEC-C motif SHALO_0541 PF01790 Prolipoprotein diacylglyceryl transferase SHALO_0542 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SHALO_0543 PF00890 FAD binding domain SHALO_0543 PF02910 Fumarate reductase flavoprotein C-term SHALO_0544 PF13183 4Fe-4S dicluster domain SHALO_0544 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_0545 PF00350 Dynamin family SHALO_0546 PF00350 Dynamin family SHALO_0549 PF01594 AI-2E family transporter SHALO_0550 PF05491 RuvB C-terminal winged helix domain SHALO_0550 PF05496 Holliday junction DNA helicase RuvB P-loop domain SHALO_0550 PF17864 RuvB AAA lid domain SHALO_0551 PF02548 Ketopantoate hydroxymethyltransferase SHALO_0553 PF00290 Tryptophan synthase alpha chain SHALO_0556 PF00318 Ribosomal protein S2 SHALO_0557 PF00889 Elongation factor TS SHALO_0558 PF00005 ABC transporter SHALO_0559 PF01311 Bacterial export proteins, family 1 SHALO_0561 PF00625 Guanylate kinase SHALO_0562 PF02416 mttA/Hcf106 family SHALO_0563 PF00750 tRNA synthetases class I (R) SHALO_0563 PF05746 DALR anticodon binding domain SHALO_0563 PF03485 Arginyl tRNA synthetase N terminal domain SHALO_0565 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0565 PF10442 FIST C domain SHALO_0565 PF08495 FIST N domain SHALO_0565 PF00563 EAL domain SHALO_0568 PF01475 Ferric uptake regulator family SHALO_0569 PF03150 Di-haem cytochrome c peroxidase SHALO_0569 PF00034 Cytochrome c SHALO_0570 PF01467 Cytidylyltransferase-like SHALO_0571 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SHALO_0571 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SHALO_0572 PF00162 Phosphoglycerate kinase SHALO_0573 PF00121 Triosephosphate isomerase SHALO_0575 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0577 PF13184 NusA-like KH domain SHALO_0577 PF08529 NusA N-terminal domain SHALO_0579 PF00919 Uncharacterized protein family UPF0004 SHALO_0579 PF01938 TRAM domain SHALO_0579 PF04055 Radical SAM superfamily SHALO_0584 PF01171 PP-loop family SHALO_0585 PF04055 Radical SAM superfamily SHALO_0585 PF00919 Uncharacterized protein family UPF0004 SHALO_0585 PF18693 TRAM domain SHALO_0586 PF02569 Pantoate-beta-alanine ligase SHALO_0587 PF00472 RF-1 domain SHALO_0587 PF03462 PCRF domain SHALO_0592 PF12169 DNA polymerase III subunits gamma and tau domain III SHALO_0592 PF12170 DNA polymerase III tau subunit V interacting with alpha SHALO_0593 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_0593 PF07497 Rho termination factor, RNA-binding domain SHALO_0593 PF07498 Rho termination factor, N-terminal domain SHALO_0594 PF01255 Putative undecaprenyl diphosphate synthase SHALO_0595 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0595 PF03707 Bacterial signalling protein N terminal repeat SHALO_0595 PF00563 EAL domain SHALO_0596 PF03063 Prismane/CO dehydrogenase family SHALO_0600 PF08378 Nuclease-related domain SHALO_0601 PF03976 Polyphosphate kinase 2 (PPK2) SHALO_0603 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_0603 PF00355 Rieske [2Fe-2S] domain SHALO_0604 PF00033 Cytochrome b/b6/petB SHALO_0604 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_0607 PF00270 DEAD/DEAH box helicase SHALO_0607 PF00271 Helicase conserved C-terminal domain SHALO_0608 PF02447 GntP family permease SHALO_0609 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SHALO_0609 PF18381 YcaO cyclodehydratase C-terminal domain SHALO_0610 PF08360 QacR-like protein, C-terminal region SHALO_0610 PF00440 Bacterial regulatory proteins, tetR family SHALO_0611 PF02321 Outer membrane efflux protein SHALO_0612 PF13533 Biotin-lipoyl like SHALO_0613 PF07690 Major Facilitator Superfamily SHALO_0614 PF00582 Universal stress protein family SHALO_0616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0616 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0616 PF00989 PAS fold SHALO_0616 PF08447 PAS fold SHALO_0617 PF00072 Response regulator receiver domain SHALO_0617 PF00486 Transcriptional regulatory protein, C terminal SHALO_0618 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_0619 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SHALO_0620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SHALO_0622 PF01934 Protein of unknown function DUF86 SHALO_0630 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SHALO_0635 PF02653 Branched-chain amino acid transport system / permease component SHALO_0636 PF02653 Branched-chain amino acid transport system / permease component SHALO_0636 PF11862 Domain of unknown function (DUF3382) SHALO_0637 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_0637 PF00005 ABC transporter SHALO_0638 PF00005 ABC transporter SHALO_0639 PF01578 Cytochrome C assembly protein SHALO_0639 PF05140 ResB-like family SHALO_0647 PF00994 Probable molybdopterin binding domain SHALO_0647 PF18146 Damage-inducible protein CinA KH domain SHALO_0647 PF02464 Competence-damaged protein SHALO_0648 PF08264 Anticodon-binding domain of tRNA SHALO_0648 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_0650 PF01425 Amidase SHALO_0651 PF00478 IMP dehydrogenase / GMP reductase domain SHALO_0651 PF00571 CBS domain SHALO_0652 PF00561 alpha/beta hydrolase fold SHALO_0653 PF02609 Exonuclease VII small subunit SHALO_0655 PF00899 ThiF family SHALO_0656 PF00155 Aminotransferase class I and II SHALO_0657 PF08245 Mur ligase middle domain SHALO_0657 PF02875 Mur ligase family, glutamate ligase domain SHALO_0657 PF01225 Mur ligase family, catalytic domain SHALO_0659 PF00488 MutS domain V SHALO_0659 PF01713 Smr domain SHALO_0660 PF01546 Peptidase family M20/M25/M40 SHALO_0660 PF07687 Peptidase dimerisation domain SHALO_0661 PF01042 Endoribonuclease L-PSP SHALO_0662 PF06039 Malate:quinone oxidoreductase (Mqo) SHALO_0665 PF00583 Acetyltransferase (GNAT) family SHALO_0666 PF03572 Peptidase family S41 SHALO_0666 PF00595 PDZ domain SHALO_0668 PF02887 Pyruvate kinase, alpha/beta domain SHALO_0668 PF00224 Pyruvate kinase, barrel domain SHALO_0668 PF00391 PEP-utilising enzyme, mobile domain SHALO_0669 PF00829 Ribosomal prokaryotic L21 protein SHALO_0670 PF01016 Ribosomal L27 protein SHALO_0671 PF01926 50S ribosome-binding GTPase SHALO_0671 PF01018 GTP1/OBG SHALO_0672 PF00696 Amino acid kinase family SHALO_0673 PF00551 Formyl transferase SHALO_0673 PF02911 Formyl transferase, C-terminal domain SHALO_0675 PF13614 AAA domain SHALO_0676 PF02195 ParB-like nuclease domain SHALO_0676 PF17762 HTH domain found in ParB protein SHALO_0678 PF00430 ATP synthase B/B' CF(0) SHALO_0679 PF00213 ATP synthase delta (OSCP) subunit SHALO_0680 PF02874 ATP synthase alpha/beta family, beta-barrel domain SHALO_0680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_0680 PF00306 ATP synthase alpha/beta chain, C terminal domain SHALO_0681 PF00231 ATP synthase SHALO_0682 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_0682 PF02874 ATP synthase alpha/beta family, beta-barrel domain SHALO_0683 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SHALO_0684 PF01618 MotA/TolQ/ExbB proton channel family SHALO_0685 PF02472 Biopolymer transport protein ExbD/TolR SHALO_0687 PF04052 TolB amino-terminal domain SHALO_0688 PF01389 OmpA-like transmembrane domain SHALO_0688 PF00691 OmpA family SHALO_0690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_0691 PF00158 Sigma-54 interaction domain SHALO_0691 PF00072 Response regulator receiver domain SHALO_0691 PF02954 Bacterial regulatory protein, Fis family SHALO_0692 PF00698 Acyl transferase domain SHALO_0693 PF01048 Phosphorylase superfamily SHALO_0694 PF01171 PP-loop family SHALO_0696 PF01645 Conserved region in glutamate synthase SHALO_0696 PF01493 GXGXG motif SHALO_0696 PF04898 Glutamate synthase central domain SHALO_0696 PF00310 Glutamine amidotransferases class-II SHALO_0697 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_0697 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_0699 PF17848 Acetyl-coA carboxylase zinc finger domain SHALO_0699 PF01039 Carboxyl transferase domain SHALO_0700 PF02590 Predicted SPOUT methyltransferase SHALO_0701 PF01258 Prokaryotic dksA/traR C4-type zinc finger SHALO_0703 PF01207 Dihydrouridine synthase (Dus) SHALO_0707 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SHALO_0707 PF04509 CheC-like family SHALO_0710 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_0712 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_0713 PF04229 GrpB protein SHALO_0714 PF00583 Acetyltransferase (GNAT) family SHALO_0716 PF01964 Radical SAM ThiC family SHALO_0716 PF13667 ThiC-associated domain SHALO_0719 PF00324 Amino acid permease SHALO_0720 PF01925 Sulfite exporter TauE/SafE SHALO_0721 PF00005 ABC transporter SHALO_0721 PF17760 UvrA interaction domain SHALO_0721 PF17755 UvrA DNA-binding domain SHALO_0722 PF00375 Sodium:dicarboxylate symporter family SHALO_0723 PF00375 Sodium:dicarboxylate symporter family SHALO_0725 PF00476 DNA polymerase family A SHALO_0725 PF01367 5'-3' exonuclease, C-terminal SAM fold SHALO_0725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SHALO_0726 PF02659 Putative manganese efflux pump SHALO_0728 PF01556 DnaJ C terminal domain SHALO_0728 PF00684 DnaJ central domain SHALO_0728 PF00226 DnaJ domain SHALO_0733 PF01654 Cytochrome bd terminal oxidase subunit I SHALO_0734 PF02322 Cytochrome bd terminal oxidase subunit II SHALO_0735 PF00486 Transcriptional regulatory protein, C terminal SHALO_0735 PF00072 Response regulator receiver domain SHALO_0736 PF16750 Sensor domain of 2-component histidine kinase SHALO_0736 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0736 PF00672 HAMP domain SHALO_0737 PF13662 Toprim domain SHALO_0737 PF02132 RecR protein SHALO_0738 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0738 PF00563 EAL domain SHALO_0738 PF03707 Bacterial signalling protein N terminal repeat SHALO_0740 PF13193 AMP-binding enzyme C-terminal domain SHALO_0740 PF00501 AMP-binding enzyme SHALO_0741 PF08501 Shikimate dehydrogenase substrate binding domain SHALO_0742 PF00425 chorismate binding enzyme SHALO_0742 PF04715 Anthranilate synthase component I, N terminal region SHALO_0745 PF00464 Serine hydroxymethyltransferase SHALO_0746 PF00152 tRNA synthetases class II (D, K and N) SHALO_0746 PF01336 OB-fold nucleic acid binding domain SHALO_0747 PF01475 Ferric uptake regulator family SHALO_0749 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0750 PF00437 Type II/IV secretion system protein SHALO_0751 PF02686 Glu-tRNAGln amidotransferase C subunit SHALO_0753 PF15437 Plasminogen-binding protein pgbA C-terminal SHALO_0755 PF03309 Type III pantothenate kinase SHALO_0756 PF01634 ATP phosphoribosyltransferase SHALO_0757 PF00072 Response regulator receiver domain SHALO_0758 PF00672 HAMP domain SHALO_0758 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0758 PF00072 Response regulator receiver domain SHALO_0758 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SHALO_0758 PF01627 Hpt domain SHALO_0761 PF08459 UvrC Helix-hairpin-helix N-terminal SHALO_0761 PF01541 GIY-YIG catalytic domain SHALO_0761 PF02151 UvrB/uvrC motif SHALO_0764 PF00890 FAD binding domain SHALO_0765 PF03600 Citrate transporter SHALO_0766 PF02540 NAD synthase SHALO_0766 PF00117 Glutamine amidotransferase class-I SHALO_0766 PF00958 GMP synthase C terminal domain SHALO_0768 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SHALO_0768 PF02843 Phosphoribosylglycinamide synthetase, C domain SHALO_0768 PF02844 Phosphoribosylglycinamide synthetase, N domain SHALO_0771 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SHALO_0771 PF01138 3' exoribonuclease family, domain 1 SHALO_0771 PF03725 3' exoribonuclease family, domain 2 SHALO_0771 PF00013 KH domain SHALO_0771 PF00575 S1 RNA binding domain SHALO_0772 PF00137 ATP synthase subunit C SHALO_0787 PF13426 PAS domain SHALO_0787 PF00072 Response regulator receiver domain SHALO_0787 PF08448 PAS fold SHALO_0787 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0788 PF00072 Response regulator receiver domain SHALO_0788 PF00486 Transcriptional regulatory protein, C terminal SHALO_0790 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SHALO_0791 PF02913 FAD linked oxidases, C-terminal domain SHALO_0791 PF01565 FAD binding domain SHALO_0793 PF00364 Biotin-requiring enzyme SHALO_0794 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SHALO_0795 PF01293 Phosphoenolpyruvate carboxykinase SHALO_0796 PF14698 Argininosuccinate lyase C-terminal SHALO_0796 PF00206 Lyase SHALO_0797 PF01230 HIT domain SHALO_0798 PF01409 tRNA synthetases class II core domain (F) SHALO_0798 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SHALO_0799 PF01588 Putative tRNA binding domain SHALO_0799 PF03147 Ferredoxin-fold anticodon binding domain SHALO_0799 PF03484 tRNA synthetase B5 domain SHALO_0799 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SHALO_0800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SHALO_0801 PF02401 LytB protein SHALO_0802 PF00575 S1 RNA binding domain SHALO_0804 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_0804 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_0804 PF01842 ACT domain SHALO_0806 PF13533 Biotin-lipoyl like SHALO_0807 PF00873 AcrB/AcrD/AcrF family SHALO_0808 PF00873 AcrB/AcrD/AcrF family SHALO_0811 PF08207 Elongation factor P (EF-P) KOW-like domain SHALO_0811 PF09285 Elongation factor P, C-terminal SHALO_0811 PF01132 Elongation factor P (EF-P) OB domain SHALO_0812 PF01965 DJ-1/PfpI family SHALO_0813 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0814 PF01624 MutS domain I SHALO_0814 PF05188 MutS domain II SHALO_0814 PF05192 MutS domain III SHALO_0814 PF05190 MutS family domain IV SHALO_0814 PF00488 MutS domain V SHALO_0820 PF00563 EAL domain SHALO_0820 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0820 PF03707 Bacterial signalling protein N terminal repeat SHALO_0825 PF08495 FIST N domain SHALO_0825 PF10442 FIST C domain SHALO_0825 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0825 PF00563 EAL domain SHALO_0827 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SHALO_0828 PF02321 Outer membrane efflux protein SHALO_0829 PF00873 AcrB/AcrD/AcrF family SHALO_0830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_0831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0831 PF08447 PAS fold SHALO_0832 PF00672 HAMP domain SHALO_0832 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0832 PF00672 HAMP domain SHALO_0832 PF17200 Single Cache domain 2 SHALO_0832 PF17200 Single Cache domain 2 SHALO_0832 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0834 PF02811 PHP domain SHALO_0834 PF14579 Helix-hairpin-helix motif SHALO_0834 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SHALO_0834 PF07733 Bacterial DNA polymerase III alpha NTPase domain SHALO_0836 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0838 PF02386 Cation transport protein SHALO_0839 PF02080 TrkA-C domain SHALO_0839 PF02254 TrkA-N domain SHALO_0842 PF01098 Cell cycle protein SHALO_0843 PF00849 RNA pseudouridylate synthase SHALO_0843 PF01479 S4 domain SHALO_0845 PF02390 Putative methyltransferase SHALO_0846 PF00005 ABC transporter SHALO_0846 PF09383 NIL domain SHALO_0849 PF00696 Amino acid kinase family SHALO_0850 PF01192 RNA polymerase Rpb6 SHALO_0851 PF02824 TGS domain SHALO_0851 PF04607 Region found in RelA / SpoT proteins SHALO_0851 PF13291 ACT domain SHALO_0852 PF00579 tRNA synthetases class I (W and Y) SHALO_0852 PF01479 S4 domain SHALO_0853 PF03060 Nitronate monooxygenase SHALO_0854 PF01520 N-acetylmuramoyl-L-alanine amidase SHALO_0857 PF02938 GAD domain SHALO_0857 PF01336 OB-fold nucleic acid binding domain SHALO_0857 PF00152 tRNA synthetases class II (D, K and N) SHALO_0858 PF00072 Response regulator receiver domain SHALO_0858 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0860 PF01513 ATP-NAD kinase SHALO_0861 PF13476 AAA domain SHALO_0862 PF02652 L-lactate permease SHALO_0863 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0864 PF01026 TatD related DNase SHALO_0865 PF05257 CHAP domain SHALO_0865 PF01476 LysM domain SHALO_0866 PF05036 Sporulation related domain SHALO_0866 PF03330 Lytic transglycolase SHALO_0867 PF00475 Imidazoleglycerol-phosphate dehydratase SHALO_0871 PF01926 50S ribosome-binding GTPase SHALO_0874 PF00905 Penicillin binding protein transpeptidase domain SHALO_0874 PF03717 Penicillin-binding Protein dimerisation domain SHALO_0876 PF02130 Uncharacterized protein family UPF0054 SHALO_0878 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_0878 PF09334 tRNA synthetases class I (M) SHALO_0878 PF01588 Putative tRNA binding domain SHALO_0880 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SHALO_0885 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_0886 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_0886 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SHALO_0889 PF00072 Response regulator receiver domain SHALO_0889 PF00196 Bacterial regulatory proteins, luxR family SHALO_0890 PF00939 Sodium:sulfate symporter transmembrane region SHALO_0891 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0891 PF00989 PAS fold SHALO_0892 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0892 PF00672 HAMP domain SHALO_0892 PF02743 Cache domain SHALO_0894 PF00072 Response regulator receiver domain SHALO_0894 PF04397 LytTr DNA-binding domain SHALO_0895 PF13581 Histidine kinase-like ATPase domain SHALO_0895 PF07568 Histidine kinase SHALO_0895 PF13426 PAS domain SHALO_0897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_0897 PF03466 LysR substrate binding domain SHALO_0898 PF00890 FAD binding domain SHALO_0898 PF02910 Fumarate reductase flavoprotein C-term SHALO_0899 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_0899 PF13183 4Fe-4S dicluster domain SHALO_0900 PF02754 Cysteine-rich domain SHALO_0902 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0902 PF00672 HAMP domain SHALO_0905 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_0906 PF02335 Cytochrome c552 SHALO_0907 PF05140 ResB-like family SHALO_0907 PF01578 Cytochrome C assembly protein SHALO_0911 PF06821 Serine hydrolase SHALO_0913 PF00486 Transcriptional regulatory protein, C terminal SHALO_0913 PF00072 Response regulator receiver domain SHALO_0917 PF02796 Helix-turn-helix domain of resolvase SHALO_0917 PF00239 Resolvase, N terminal domain SHALO_0918 PF04172 LrgB-like family SHALO_0922 PF01636 Phosphotransferase enzyme family SHALO_0924 PF09335 SNARE associated Golgi protein SHALO_0926 PF09335 SNARE associated Golgi protein SHALO_0927 PF13847 Methyltransferase domain SHALO_0928 PF00892 EamA-like transporter family SHALO_0929 PF00037 4Fe-4S binding domain SHALO_0930 PF12833 Helix-turn-helix domain SHALO_0933 PF12833 Helix-turn-helix domain SHALO_0933 PF10114 Sensory domain found in PocR SHALO_0937 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_0937 PF01411 tRNA synthetases class II (A) SHALO_0937 PF02272 DHHA1 domain SHALO_0940 PF01040 UbiA prenyltransferase family SHALO_0941 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SHALO_0941 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SHALO_0943 PF00510 Cytochrome c oxidase subunit III SHALO_0944 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_0944 PF00510 Cytochrome c oxidase subunit III SHALO_0949 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0949 PF00384 Molybdopterin oxidoreductase SHALO_0949 PF01568 Molydopterin dinucleotide binding domain SHALO_0949 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_0950 PF12800 4Fe-4S binding domain SHALO_0950 PF12838 4Fe-4S dicluster domain SHALO_0951 PF12801 4Fe-4S binding domain SHALO_0951 PF00037 4Fe-4S binding domain SHALO_0952 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SHALO_0953 PF13187 4Fe-4S dicluster domain SHALO_0953 PF00037 4Fe-4S binding domain SHALO_0953 PF12800 4Fe-4S binding domain SHALO_0956 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0956 PF08447 PAS fold SHALO_0957 PF01926 50S ribosome-binding GTPase SHALO_0957 PF06071 Protein of unknown function (DUF933) SHALO_0961 PF00593 TonB dependent receptor SHALO_0961 PF07660 Secretin and TonB N terminus short domain SHALO_0961 PF07715 TonB-dependent Receptor Plug Domain SHALO_0963 PF04542 Sigma-70 region 2 SHALO_0963 PF08281 Sigma-70, region 4 SHALO_0966 PF01568 Molydopterin dinucleotide binding domain SHALO_0966 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0966 PF00384 Molybdopterin oxidoreductase SHALO_0969 PF00486 Transcriptional regulatory protein, C terminal SHALO_0969 PF00072 Response regulator receiver domain SHALO_0971 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0972 PF00034 Cytochrome c SHALO_0973 PF00355 Rieske [2Fe-2S] domain SHALO_0973 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_0974 PF00033 Cytochrome b/b6/petB SHALO_0974 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_0976 PF13426 PAS domain SHALO_0976 PF08447 PAS fold SHALO_0976 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0978 PF00563 EAL domain SHALO_0978 PF00990 Diguanylate cyclase, GGDEF domain SHALO_0978 PF10442 FIST C domain SHALO_0978 PF08495 FIST N domain SHALO_0979 PF02666 Phosphatidylserine decarboxylase SHALO_0980 PF00271 Helicase conserved C-terminal domain SHALO_0980 PF03880 DbpA RNA binding domain SHALO_0980 PF00270 DEAD/DEAH box helicase SHALO_0982 PF08348 YheO-like PAS domain SHALO_0982 PF13309 HTH domain SHALO_0983 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SHALO_0983 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SHALO_0985 PF08502 LeuA allosteric (dimerisation) domain SHALO_0985 PF00682 HMGL-like SHALO_0986 PF01209 ubiE/COQ5 methyltransferase family SHALO_0987 PF01810 LysE type translocator SHALO_0988 PF11849 Domain of unknown function (DUF3369) SHALO_0989 PF00672 HAMP domain SHALO_0989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0989 PF12729 Four helix bundle sensory module for signal transduction SHALO_0992 PF00672 HAMP domain SHALO_0992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0992 PF07730 Histidine kinase SHALO_0993 PF00072 Response regulator receiver domain SHALO_0993 PF00196 Bacterial regulatory proteins, luxR family SHALO_0994 PF00753 Metallo-beta-lactamase superfamily SHALO_0994 PF14863 Alkyl sulfatase dimerisation SHALO_0994 PF14864 Alkyl sulfatase C-terminal SHALO_0995 PF02525 Flavodoxin-like fold SHALO_0997 PF01709 Transcriptional regulator SHALO_0999 PF16868 NMT1-like family SHALO_1002 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_1002 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SHALO_1004 PF00118 TCP-1/cpn60 chaperonin family SHALO_1005 PF00166 Chaperonin 10 Kd subunit SHALO_1007 PF02899 Phage integrase, N-terminal SAM-like domain SHALO_1007 PF00589 Phage integrase family SHALO_1016 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_1016 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1016 PF17871 AAA lid domain SHALO_1016 PF07724 AAA domain (Cdc48 subfamily) SHALO_1032 PF05981 CreA protein SHALO_1033 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1033 PF00563 EAL domain SHALO_1033 PF03707 Bacterial signalling protein N terminal repeat SHALO_1035 PF12833 Helix-turn-helix domain SHALO_1035 PF00072 Response regulator receiver domain SHALO_1036 PF13188 PAS domain SHALO_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1036 PF13426 PAS domain SHALO_1040 PF03412 Peptidase C39 family SHALO_1040 PF00664 ABC transporter transmembrane region SHALO_1040 PF00005 ABC transporter SHALO_1042 PF00196 Bacterial regulatory proteins, luxR family SHALO_1042 PF00072 Response regulator receiver domain SHALO_1046 PF04174 A circularly permuted ATPgrasp SHALO_1047 PF01841 Transglutaminase-like superfamily SHALO_1047 PF08379 Bacterial transglutaminase-like N-terminal region SHALO_1049 PF01381 Helix-turn-helix SHALO_1053 PF01841 Transglutaminase-like superfamily SHALO_1053 PF08379 Bacterial transglutaminase-like N-terminal region SHALO_1055 PF14403 Circularly permuted ATP-grasp type 2 SHALO_1058 PF06738 Putative threonine/serine exporter SHALO_1059 PF06738 Putative threonine/serine exporter SHALO_1059 PF12821 Threonine/Serine exporter, ThrE SHALO_1060 PF01814 Hemerythrin HHE cation binding domain SHALO_1061 PF00403 Heavy-metal-associated domain SHALO_1062 PF01022 Bacterial regulatory protein, arsR family SHALO_1065 PF00464 Serine hydroxymethyltransferase SHALO_1066 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SHALO_1066 PF12833 Helix-turn-helix domain SHALO_1066 PF02805 Metal binding domain of Ada SHALO_1066 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_1067 PF12833 Helix-turn-helix domain SHALO_1067 PF02311 AraC-like ligand binding domain SHALO_1068 PF02627 Carboxymuconolactone decarboxylase family SHALO_1070 PF17202 Single cache domain 3 SHALO_1070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1070 PF00672 HAMP domain SHALO_1071 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1071 PF02743 Cache domain SHALO_1071 PF00672 HAMP domain SHALO_1072 PF02581 Thiamine monophosphate synthase SHALO_1075 PF03006 Haemolysin-III related SHALO_1077 PF01810 LysE type translocator SHALO_1078 PF02754 Cysteine-rich domain SHALO_1079 PF13183 4Fe-4S dicluster domain SHALO_1079 PF02589 LUD domain SHALO_1079 PF11870 Domain of unknown function (DUF3390) SHALO_1080 PF02589 LUD domain SHALO_1081 PF00892 EamA-like transporter family SHALO_1085 PF00929 Exonuclease SHALO_1085 PF02811 PHP domain SHALO_1085 PF14579 Helix-hairpin-helix motif SHALO_1085 PF07733 Bacterial DNA polymerase III alpha NTPase domain SHALO_1085 PF11490 DNA polymerase III polC-type N-terminus II SHALO_1085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SHALO_1087 PF08267 Cobalamin-independent synthase, N-terminal domain SHALO_1087 PF01717 Cobalamin-independent synthase, Catalytic domain SHALO_1089 PF01435 Peptidase family M48 SHALO_1093 PF01739 CheR methyltransferase, SAM binding domain SHALO_1094 PF01339 CheB methylesterase SHALO_1094 PF00072 Response regulator receiver domain SHALO_1095 PF02789 Cytosol aminopeptidase family, N-terminal domain SHALO_1095 PF00883 Cytosol aminopeptidase family, catalytic domain SHALO_1096 PF09335 SNARE associated Golgi protein SHALO_1097 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1098 PF00156 Phosphoribosyl transferase domain SHALO_1100 PF02502 Ribose/Galactose Isomerase SHALO_1101 PF02163 Peptidase family M50 SHALO_1102 PF10502 Signal peptidase, peptidase S26 SHALO_1103 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SHALO_1103 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHALO_1105 PF00202 Aminotransferase class-III SHALO_1108 PF04055 Radical SAM superfamily SHALO_1109 PF05193 Peptidase M16 inactive domain SHALO_1110 PF00271 Helicase conserved C-terminal domain SHALO_1110 PF04851 Type III restriction enzyme, res subunit SHALO_1116 PF02623 FliW protein SHALO_1117 PF13525 Outer membrane lipoprotein SHALO_1118 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1118 PF05362 Lon protease (S16) C-terminal proteolytic domain SHALO_1118 PF02190 ATP-dependent protease La (LON) substrate-binding domain SHALO_1119 PF01084 Ribosomal protein S18 SHALO_1120 PF00436 Single-strand binding protein family SHALO_1121 PF01250 Ribosomal protein S6 SHALO_1122 PF06144 DNA polymerase III, delta subunit SHALO_1123 PF00773 RNB domain SHALO_1125 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SHALO_1125 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SHALO_1126 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SHALO_1127 PF03776 Septum formation topological specificity factor MinE SHALO_1130 PF01925 Sulfite exporter TauE/SafE SHALO_1131 PF04073 Aminoacyl-tRNA editing domain SHALO_1134 PF03313 Serine dehydratase alpha chain SHALO_1134 PF03315 Serine dehydratase beta chain SHALO_1135 PF03652 Holliday junction resolvase SHALO_1136 PF03458 UPF0126 domain SHALO_1137 PF00202 Aminotransferase class-III SHALO_1139 PF05690 Thiazole biosynthesis protein ThiG SHALO_1139 PF02597 ThiS family SHALO_1140 PF01648 4'-phosphopantetheinyl transferase superfamily SHALO_1141 PF03748 Flagellar basal body-associated protein FliL SHALO_1142 PF18073 Rubredoxin metal binding domain SHALO_1143 PF00448 SRP54-type protein, GTPase domain SHALO_1144 PF00578 AhpC/TSA family SHALO_1146 PF12072 Domain of unknown function (DUF3552) SHALO_1146 PF01966 HD domain SHALO_1147 PF00664 ABC transporter transmembrane region SHALO_1147 PF00005 ABC transporter SHALO_1149 PF09335 SNARE associated Golgi protein SHALO_1151 PF01758 Sodium Bile acid symporter family SHALO_1152 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SHALO_1154 PF00072 Response regulator receiver domain SHALO_1154 PF12833 Helix-turn-helix domain SHALO_1155 PF01966 HD domain SHALO_1155 PF00072 Response regulator receiver domain SHALO_1156 PF08448 PAS fold SHALO_1156 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1156 PF00563 EAL domain SHALO_1157 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1157 PF00989 PAS fold SHALO_1158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1158 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1160 PF04073 Aminoacyl-tRNA editing domain SHALO_1171 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_1171 PF00925 GTP cyclohydrolase II SHALO_1172 PF00999 Sodium/hydrogen exchanger family SHALO_1172 PF02254 TrkA-N domain SHALO_1173 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1173 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1173 PF00672 HAMP domain SHALO_1174 PF00149 Calcineurin-like phosphoesterase SHALO_1175 PF04264 YceI-like domain SHALO_1178 PF00005 ABC transporter SHALO_1181 PF00183 Hsp90 protein SHALO_1182 PF00872 Transposase, Mutator family SHALO_1187 PF01327 Polypeptide deformylase SHALO_1188 PF03061 Thioesterase superfamily SHALO_1190 PF03167 Uracil DNA glycosylase superfamily SHALO_1193 PF00682 HMGL-like SHALO_1194 PF04055 Radical SAM superfamily SHALO_1194 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1195 PF01966 HD domain SHALO_1195 PF00072 Response regulator receiver domain SHALO_1196 PF00486 Transcriptional regulatory protein, C terminal SHALO_1196 PF00072 Response regulator receiver domain SHALO_1197 PF08495 FIST N domain SHALO_1197 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1197 PF00563 EAL domain SHALO_1197 PF10442 FIST C domain SHALO_1198 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1199 PF00486 Transcriptional regulatory protein, C terminal SHALO_1199 PF00072 Response regulator receiver domain SHALO_1200 PF00258 Flavodoxin SHALO_1200 PF00753 Metallo-beta-lactamase superfamily SHALO_1201 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1203 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1205 PF02574 Homocysteine S-methyltransferase SHALO_1206 PF00171 Aldehyde dehydrogenase family SHALO_1207 PF12795 Mechanosensitive ion channel porin domain SHALO_1207 PF00924 Mechanosensitive ion channel SHALO_1207 PF12794 Mechanosensitive ion channel inner membrane domain 1 SHALO_1210 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1211 PF03270 Protein of unknown function, DUF269 SHALO_1213 PF03206 Nitrogen fixation protein NifW SHALO_1214 PF04319 NifZ domain SHALO_1216 PF00111 2Fe-2S iron-sulfur cluster binding domain SHALO_1217 PF04552 Sigma-54, DNA binding domain SHALO_1217 PF04963 Sigma-54 factor, core binding domain SHALO_1217 PF00309 Sigma-54 factor, Activator interacting domain (AID) SHALO_1228 PF00905 Penicillin binding protein transpeptidase domain SHALO_1229 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1229 PF00563 EAL domain SHALO_1229 PF03707 Bacterial signalling protein N terminal repeat SHALO_1234 PF01863 Protein of unknown function DUF45 SHALO_1237 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SHALO_1239 PF02567 Phenazine biosynthesis-like protein SHALO_1243 PF00561 alpha/beta hydrolase fold SHALO_1245 PF13536 Putative multidrug resistance efflux transporter SHALO_1247 PF17158 Membrane-associated sensor, integral membrane domain SHALO_1247 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1248 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1248 PF17158 Membrane-associated sensor, integral membrane domain SHALO_1249 PF00392 Bacterial regulatory proteins, gntR family SHALO_1249 PF00155 Aminotransferase class I and II SHALO_1253 PF01063 Amino-transferase class IV SHALO_1256 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1256 PF00672 HAMP domain SHALO_1257 PF01568 Molydopterin dinucleotide binding domain SHALO_1257 PF00384 Molybdopterin oxidoreductase SHALO_1257 PF18364 Molybdopterin oxidoreductase N-terminal domain SHALO_1259 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_1261 PF00486 Transcriptional regulatory protein, C terminal SHALO_1261 PF00072 Response regulator receiver domain SHALO_1265 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SHALO_1267 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1271 PF00072 Response regulator receiver domain SHALO_1271 PF00486 Transcriptional regulatory protein, C terminal SHALO_1273 PF00072 Response regulator receiver domain SHALO_1273 PF04397 LytTr DNA-binding domain SHALO_1274 PF05199 GMC oxidoreductase SHALO_1274 PF00732 GMC oxidoreductase SHALO_1278 PF00072 Response regulator receiver domain SHALO_1278 PF00486 Transcriptional regulatory protein, C terminal SHALO_1279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1279 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1279 PF00672 HAMP domain SHALO_1280 PF00795 Carbon-nitrogen hydrolase SHALO_1280 PF00583 Acetyltransferase (GNAT) family SHALO_1287 PF00072 Response regulator receiver domain SHALO_1287 PF00486 Transcriptional regulatory protein, C terminal SHALO_1290 PF17202 Single cache domain 3 SHALO_1290 PF00672 HAMP domain SHALO_1290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1291 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1291 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_1292 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SHALO_1293 PF13247 4Fe-4S dicluster domain SHALO_1294 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_1294 PF00374 Nickel-dependent hydrogenase SHALO_1295 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_1297 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_1300 PF05977 Transmembrane secretion effector SHALO_1303 PF02589 LUD domain SHALO_1304 PF11870 Domain of unknown function (DUF3390) SHALO_1304 PF13183 4Fe-4S dicluster domain SHALO_1304 PF02589 LUD domain SHALO_1305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_1307 PF07683 Cobalamin synthesis protein cobW C-terminal domain SHALO_1307 PF02492 CobW/HypB/UreG, nucleotide-binding domain SHALO_1308 PF04328 Selenoprotein, putative SHALO_1309 PF13722 5TM C-terminal transporter carbon starvation CstA SHALO_1309 PF02554 Carbon starvation protein CstA SHALO_1311 PF02910 Fumarate reductase flavoprotein C-term SHALO_1311 PF00890 FAD binding domain SHALO_1312 PF06988 NifT/FixU protein SHALO_1313 PF00158 Sigma-54 interaction domain SHALO_1313 PF13185 GAF domain SHALO_1313 PF02954 Bacterial regulatory protein, Fis family SHALO_1318 PF02769 AIR synthase related protein, C-terminal domain SHALO_1318 PF00586 AIR synthase related protein, N-terminal domain SHALO_1319 PF01142 tRNA pseudouridine synthase D (TruD) SHALO_1320 PF02254 TrkA-N domain SHALO_1320 PF00999 Sodium/hydrogen exchanger family SHALO_1320 PF02080 TrkA-C domain SHALO_1321 PF03707 Bacterial signalling protein N terminal repeat SHALO_1321 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1321 PF00563 EAL domain SHALO_1323 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1325 PF08543 Phosphomethylpyrimidine kinase SHALO_1327 PF02110 Hydroxyethylthiazole kinase family SHALO_1329 PF02535 ZIP Zinc transporter SHALO_1331 PF01966 HD domain SHALO_1332 PF02743 Cache domain SHALO_1332 PF00672 HAMP domain SHALO_1332 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1333 PF00753 Metallo-beta-lactamase superfamily SHALO_1333 PF12706 Beta-lactamase superfamily domain SHALO_1335 PF12848 ABC transporter SHALO_1335 PF16326 ABC transporter C-terminal domain SHALO_1335 PF00005 ABC transporter SHALO_1336 PF13677 Membrane MotB of proton-channel complex MotA/MotB SHALO_1336 PF00691 OmpA family SHALO_1337 PF01618 MotA/TolQ/ExbB proton channel family SHALO_1338 PF08361 MAATS-type transcriptional repressor, C-terminal region SHALO_1338 PF00440 Bacterial regulatory proteins, tetR family SHALO_1339 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_1340 PF00873 AcrB/AcrD/AcrF family SHALO_1341 PF02321 Outer membrane efflux protein SHALO_1344 PF00881 Nitroreductase family SHALO_1345 PF00881 Nitroreductase family SHALO_1354 PF00501 AMP-binding enzyme SHALO_1354 PF14535 AMP-binding enzyme C-terminal domain SHALO_1358 PF00474 Sodium:solute symporter family SHALO_1360 PF02561 Flagellar protein FliS SHALO_1361 PF02465 Flagellar hook-associated protein 2 N-terminus SHALO_1361 PF07195 Flagellar hook-associated protein 2 C-terminus SHALO_1365 PF02119 Flagellar P-ring protein SHALO_1369 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1369 PF07196 Flagellin hook IN motif SHALO_1370 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_1370 PF12911 N-terminal TM domain of oligopeptide transport permease C SHALO_1372 PF00916 Sulfate permease family SHALO_1372 PF01740 STAS domain SHALO_1373 PF01361 Tautomerase enzyme SHALO_1374 PF00119 ATP synthase A chain SHALO_1377 PF02637 GatB domain SHALO_1377 PF02934 GatB/GatE catalytic domain SHALO_1378 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SHALO_1378 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SHALO_1379 PF00933 Glycosyl hydrolase family 3 N terminal domain SHALO_1381 PF01416 tRNA pseudouridine synthase SHALO_1383 PF01478 Type IV leader peptidase family SHALO_1383 PF06750 Bacterial Peptidase A24 N-terminal domain SHALO_1385 PF04127 DNA / pantothenate metabolism flavoprotein SHALO_1385 PF02441 Flavoprotein SHALO_1386 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1386 PF12804 MobA-like NTP transferase domain SHALO_1387 PF00813 FliP family SHALO_1388 PF01263 Aldose 1-epimerase SHALO_1389 PF01638 HxlR-like helix-turn-helix SHALO_1390 PF02525 Flavodoxin-like fold SHALO_1393 PF13194 Domain of unknown function (DUF4010) SHALO_1394 PF08497 Radical SAM N-terminal SHALO_1394 PF04055 Radical SAM superfamily SHALO_1395 PF00342 Phosphoglucose isomerase SHALO_1399 PF00374 Nickel-dependent hydrogenase SHALO_1400 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_1400 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SHALO_1400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_1401 PF00374 Nickel-dependent hydrogenase SHALO_1402 PF01292 Prokaryotic cytochrome b561 SHALO_1403 PF01750 Hydrogenase maturation protease SHALO_1405 PF01300 Telomere recombination SHALO_1405 PF00708 Acylphosphatase SHALO_1405 PF07503 HypF finger SHALO_1405 PF17788 HypF Kae1-like domain SHALO_1406 PF08753 NikR C terminal nickel binding domain SHALO_1406 PF01402 Ribbon-helix-helix protein, copG family SHALO_1407 PF07715 TonB-dependent Receptor Plug Domain SHALO_1407 PF00593 TonB dependent receptor SHALO_1410 PF02492 CobW/HypB/UreG, nucleotide-binding domain SHALO_1411 PF01455 HupF/HypC family SHALO_1412 PF01924 Hydrogenase formation hypA family SHALO_1413 PF00586 AIR synthase related protein, N-terminal domain SHALO_1413 PF02769 AIR synthase related protein, C-terminal domain SHALO_1414 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SHALO_1415 PF00583 Acetyltransferase (GNAT) family SHALO_1416 PF13419 Haloacid dehalogenase-like hydrolase SHALO_1419 PF03971 Monomeric isocitrate dehydrogenase SHALO_1420 PF00056 lactate/malate dehydrogenase, NAD binding domain SHALO_1420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SHALO_1421 PF08442 ATP-grasp domain SHALO_1421 PF00549 CoA-ligase SHALO_1422 PF00549 CoA-ligase SHALO_1422 PF02629 CoA binding domain SHALO_1424 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SHALO_1424 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_1424 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_1425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_1425 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_1425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1430 PF10415 Fumarase C C-terminus SHALO_1430 PF00206 Lyase SHALO_1433 PF01914 MarC family integral membrane protein SHALO_1436 PF01168 Alanine racemase, N-terminal domain SHALO_1437 PF17820 PDZ domain SHALO_1437 PF02163 Peptidase family M50 SHALO_1438 PF01066 CDP-alcohol phosphatidyltransferase SHALO_1440 PF00701 Dihydrodipicolinate synthetase family SHALO_1442 PF01180 Dihydroorotate dehydrogenase SHALO_1443 PF00005 ABC transporter SHALO_1443 PF00664 ABC transporter transmembrane region SHALO_1444 PF01406 tRNA synthetases class I (C) catalytic domain SHALO_1445 PF03023 Lipid II flippase MurJ SHALO_1447 PF07499 RuvA, C-terminal domain SHALO_1447 PF01330 RuvA N terminal domain SHALO_1448 PF07478 D-ala D-ala ligase C-terminus SHALO_1448 PF01820 D-ala D-ala ligase N-terminus SHALO_1451 PF00708 Acylphosphatase SHALO_1452 PF02875 Mur ligase family, glutamate ligase domain SHALO_1452 PF01225 Mur ligase family, catalytic domain SHALO_1452 PF08245 Mur ligase middle domain SHALO_1453 PF01515 Phosphate acetyl/butaryl transferase SHALO_1453 PF07085 DRTGG domain SHALO_1454 PF00871 Acetokinase family SHALO_1456 PF02107 Flagellar L-ring protein SHALO_1458 PF00482 Type II secretion system (T2SS), protein F SHALO_1459 PF00437 Type II/IV secretion system protein SHALO_1462 PF03958 Bacterial type II/III secretion system short domain SHALO_1462 PF00263 Bacterial type II and III secretion system protein SHALO_1466 PF01926 50S ribosome-binding GTPase SHALO_1466 PF07650 KH domain SHALO_1467 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_1467 PF07724 AAA domain (Cdc48 subfamily) SHALO_1468 PF00227 Proteasome subunit SHALO_1469 PF01281 Ribosomal protein L9, N-terminal domain SHALO_1469 PF03948 Ribosomal protein L9, C-terminal domain SHALO_1471 PF00764 Arginosuccinate synthase SHALO_1472 PF01479 S4 domain SHALO_1473 PF00591 Glycosyl transferase family, a/b domain SHALO_1473 PF02885 Glycosyl transferase family, helical bundle domain SHALO_1474 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SHALO_1475 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_1475 PF00005 ABC transporter SHALO_1476 PF04552 Sigma-54, DNA binding domain SHALO_1476 PF04963 Sigma-54 factor, core binding domain SHALO_1476 PF00309 Sigma-54 factor, Activator interacting domain (AID) SHALO_1478 PF04377 Arginine-tRNA-protein transferase, C terminus SHALO_1478 PF04376 Arginine-tRNA-protein transferase, N terminus SHALO_1482 PF13359 DDE superfamily endonuclease SHALO_1482 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_1483 PF13359 DDE superfamily endonuclease SHALO_1483 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_1484 PF00072 Response regulator receiver domain SHALO_1487 PF00072 Response regulator receiver domain SHALO_1490 PF00890 FAD binding domain SHALO_1490 PF14537 Cytochrome c3 SHALO_1491 PF00925 GTP cyclohydrolase II SHALO_1492 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_1492 PF00925 GTP cyclohydrolase II SHALO_1493 PF00885 6,7-dimethyl-8-ribityllumazine synthase SHALO_1498 PF00989 PAS fold SHALO_1498 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1499 PF01966 HD domain SHALO_1499 PF00072 Response regulator receiver domain SHALO_1502 PF00072 Response regulator receiver domain SHALO_1502 PF13426 PAS domain SHALO_1502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1503 PF00486 Transcriptional regulatory protein, C terminal SHALO_1503 PF00072 Response regulator receiver domain SHALO_1505 PF12838 4Fe-4S dicluster domain SHALO_1505 PF12800 4Fe-4S binding domain SHALO_1507 PF03186 CobD/Cbib protein SHALO_1508 PF00155 Aminotransferase class I and II SHALO_1509 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SHALO_1510 PF07685 CobB/CobQ-like glutamine amidotransferase domain SHALO_1513 PF02654 Cobalamin-5-phosphate synthase SHALO_1514 PF00300 Histidine phosphatase superfamily (branch 1) SHALO_1515 PF06180 Cobalt chelatase (CbiK) SHALO_1517 PF00005 ABC transporter SHALO_1519 PF02570 Precorrin-8X methylmutase SHALO_1520 PF01888 CbiD SHALO_1522 PF05175 Methyltransferase small domain SHALO_1523 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1524 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1525 PF11760 Cobalamin synthesis G N-terminal SHALO_1525 PF11761 Cobalamin biosynthesis central region SHALO_1525 PF01890 Cobalamin synthesis G C-terminus SHALO_1526 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1526 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SHALO_1528 PF02571 Precorrin-6x reductase CbiJ/CobK SHALO_1529 PF00664 ABC transporter transmembrane region SHALO_1529 PF00005 ABC transporter SHALO_1530 PF07685 CobB/CobQ-like glutamine amidotransferase domain SHALO_1530 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SHALO_1532 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1532 PF10414 Sirohaem synthase dimerisation region SHALO_1532 PF14824 Sirohaem biosynthesis protein central SHALO_1533 PF00440 Bacterial regulatory proteins, tetR family SHALO_1533 PF18665 Tetracyclin repressor-like, C-terminal domain SHALO_1554 PF00589 Phage integrase family SHALO_1554 PF13356 Arm DNA-binding domain SHALO_1556 PF00216 Bacterial DNA-binding protein SHALO_1558 PF17854 FtsK alpha domain SHALO_1558 PF01580 FtsK/SpoIIIE family SHALO_1558 PF09397 Ftsk gamma domain SHALO_1559 PF06434 Aconitate hydratase 2 N-terminus SHALO_1559 PF11791 Aconitate B N-terminal domain SHALO_1559 PF00330 Aconitase family (aconitate hydratase) SHALO_1560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_1561 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SHALO_1561 PF02896 PEP-utilising enzyme, TIM barrel domain SHALO_1561 PF00391 PEP-utilising enzyme, mobile domain SHALO_1562 PF07690 Major Facilitator Superfamily SHALO_1566 PF05958 tRNA (Uracil-5-)-methyltransferase SHALO_1567 PF00672 HAMP domain SHALO_1567 PF02743 Cache domain SHALO_1567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1568 PF13380 CoA binding domain SHALO_1569 PF13291 ACT domain SHALO_1569 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1571 PF00005 ABC transporter SHALO_1572 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_1573 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_1574 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_1575 PF01474 Class-II DAHP synthetase family SHALO_1577 PF09335 SNARE associated Golgi protein SHALO_1579 PF12704 MacB-like periplasmic core domain SHALO_1579 PF02687 FtsX-like permease family SHALO_1579 PF00005 ABC transporter SHALO_1580 PF00171 Aldehyde dehydrogenase family SHALO_1581 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1583 PF05175 Methyltransferase small domain SHALO_1584 PF03692 Putative zinc- or iron-chelating domain SHALO_1586 PF00218 Indole-3-glycerol phosphate synthase SHALO_1590 PF01891 Cobalt uptake substrate-specific transmembrane region SHALO_1590 PF13190 PDGLE domain SHALO_1593 PF00005 ABC transporter SHALO_1594 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SHALO_1595 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SHALO_1598 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1601 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1601 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_1601 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_1602 PF10369 Small subunit of acetolactate synthase SHALO_1603 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SHALO_1603 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1605 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_1605 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1606 PF00155 Aminotransferase class I and II SHALO_1607 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1608 PF01590 GAF domain SHALO_1608 PF02954 Bacterial regulatory protein, Fis family SHALO_1608 PF00158 Sigma-54 interaction domain SHALO_1610 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1611 PF03139 Vanadium/alternative nitrogenase delta subunit SHALO_1612 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1613 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1614 PF17810 Arginine decarboxylase helical bundle domain SHALO_1614 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SHALO_1614 PF17944 Arginine decarboxylase C-terminal helical extension SHALO_1615 PF03129 Anticodon binding domain SHALO_1615 PF13393 Histidyl-tRNA synthetase SHALO_1616 PF02223 Thymidylate kinase SHALO_1617 PF01467 Cytidylyltransferase-like SHALO_1618 PF02441 Flavoprotein SHALO_1621 PF02743 Cache domain SHALO_1621 PF00672 HAMP domain SHALO_1621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1622 PF03453 MoeA N-terminal region (domain I and II) SHALO_1622 PF03454 MoeA C-terminal region (domain IV) SHALO_1622 PF00994 Probable molybdopterin binding domain SHALO_1623 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SHALO_1628 PF00939 Sodium:sulfate symporter transmembrane region SHALO_1630 PF00731 AIR carboxylase SHALO_1631 PF02540 NAD synthase SHALO_1632 PF01969 Protein of unknown function DUF111 SHALO_1633 PF09861 Lactate racemase N-terminal domain SHALO_1634 PF05683 Fumarase C-terminus SHALO_1634 PF05681 Fumarate hydratase (Fumerase) SHALO_1635 PF05683 Fumarase C-terminus SHALO_1635 PF05681 Fumarate hydratase (Fumerase) SHALO_1636 PF03605 Anaerobic c4-dicarboxylate membrane transporter SHALO_1637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1637 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1637 PF09308 LuxQ, periplasmic SHALO_1637 PF00072 Response regulator receiver domain SHALO_1638 PF00486 Transcriptional regulatory protein, C terminal SHALO_1638 PF00072 Response regulator receiver domain SHALO_1643 PF18644 Phage integrase SAM-like domain SHALO_1643 PF00589 Phage integrase family SHALO_1644 PF01702 Queuine tRNA-ribosyltransferase SHALO_1646 PF01761 3-dehydroquinate synthase SHALO_1648 PF00919 Uncharacterized protein family UPF0004 SHALO_1648 PF04055 Radical SAM superfamily SHALO_1649 PF17862 AAA+ lid domain SHALO_1649 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1649 PF01434 Peptidase family M41 SHALO_1649 PF06480 FtsH Extracellular SHALO_1653 PF00296 Luciferase-like monooxygenase SHALO_1657 PF08279 HTH domain SHALO_1657 PF13280 WYL domain SHALO_1658 PF00849 RNA pseudouridylate synthase SHALO_1658 PF01479 S4 domain SHALO_1660 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_1660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_1660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1663 PF04960 Glutaminase SHALO_1664 PF03707 Bacterial signalling protein N terminal repeat SHALO_1664 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1664 PF00563 EAL domain SHALO_1665 PF12833 Helix-turn-helix domain SHALO_1665 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SHALO_1667 PF08359 YsiA-like protein, C-terminal region SHALO_1667 PF00440 Bacterial regulatory proteins, tetR family SHALO_1669 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_1669 PF00529 HlyD membrane-fusion protein of T1SS SHALO_1670 PF00873 AcrB/AcrD/AcrF family SHALO_1673 PF02915 Rubrerythrin SHALO_1675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SHALO_1676 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SHALO_1676 PF03900 Porphobilinogen deaminase, C-terminal domain SHALO_1679 PF04073 Aminoacyl-tRNA editing domain SHALO_1679 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_1679 PF03129 Anticodon binding domain SHALO_1680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SHALO_1680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SHALO_1680 PF01488 Shikimate / quinate 5-dehydrogenase SHALO_1681 PF00348 Polyprenyl synthetase SHALO_1684 PF01053 Cys/Met metabolism PLP-dependent enzyme SHALO_1685 PF02082 Transcriptional regulator SHALO_1686 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1687 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1688 PF08264 Anticodon-binding domain of tRNA SHALO_1688 PF10458 Valyl tRNA synthetase tRNA binding arm SHALO_1688 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_1689 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_1690 PF00994 Probable molybdopterin binding domain SHALO_1692 PF00815 Histidinol dehydrogenase SHALO_1694 PF01116 Fructose-bisphosphate aldolase class-II SHALO_1696 PF00633 Helix-hairpin-helix motif SHALO_1696 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_1698 PF01546 Peptidase family M20/M25/M40 SHALO_1698 PF07687 Peptidase dimerisation domain SHALO_1700 PF08003 Protein of unknown function (DUF1698) SHALO_1703 PF02540 NAD synthase SHALO_1704 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_1705 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SHALO_1706 PF00696 Amino acid kinase family SHALO_1707 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1708 PF02348 Cytidylyltransferase SHALO_1711 PF02683 Cytochrome C biogenesis protein transmembrane region SHALO_1711 PF11412 Disulphide bond corrector protein DsbC SHALO_1712 PF03976 Polyphosphate kinase 2 (PPK2) SHALO_1713 PF00012 Hsp70 protein SHALO_1714 PF01025 GrpE SHALO_1718 PF00312 Ribosomal protein S15 SHALO_1719 PF02082 Transcriptional regulator SHALO_1720 PF00771 FHIPEP family SHALO_1723 PF13649 Methyltransferase domain SHALO_1724 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1725 PF06574 FAD synthetase SHALO_1725 PF01687 Riboflavin kinase SHALO_1726 PF00163 Ribosomal protein S4/S9 N-terminal domain SHALO_1726 PF01479 S4 domain SHALO_1727 PF03120 NAD-dependent DNA ligase OB-fold domain SHALO_1727 PF00533 BRCA1 C Terminus (BRCT) domain SHALO_1727 PF01653 NAD-dependent DNA ligase adenylation domain SHALO_1727 PF12826 Helix-hairpin-helix motif SHALO_1728 PF01925 Sulfite exporter TauE/SafE SHALO_1730 PF00809 Pterin binding enzyme SHALO_1731 PF12169 DNA polymerase III subunits gamma and tau domain III SHALO_1733 PF00696 Amino acid kinase family SHALO_1733 PF13840 ACT domain SHALO_1733 PF01842 ACT domain SHALO_1734 PF00293 NUDIX domain SHALO_1735 PF04055 Radical SAM superfamily SHALO_1735 PF06969 HemN C-terminal domain SHALO_1736 PF02254 TrkA-N domain SHALO_1736 PF00999 Sodium/hydrogen exchanger family SHALO_1737 PF13411 MerR HTH family regulatory protein SHALO_1738 PF01556 DnaJ C terminal domain SHALO_1738 PF00684 DnaJ central domain SHALO_1738 PF00226 DnaJ domain SHALO_1739 PF00595 PDZ domain SHALO_1740 PF00486 Transcriptional regulatory protein, C terminal SHALO_1740 PF00072 Response regulator receiver domain SHALO_1741 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1744 PF00271 Helicase conserved C-terminal domain SHALO_1744 PF01043 SecA preprotein cross-linking domain SHALO_1744 PF07517 SecA DEAD-like domain SHALO_1744 PF02810 SEC-C motif SHALO_1744 PF07516 SecA Wing and Scaffold domain SHALO_1746 PF03707 Bacterial signalling protein N terminal repeat SHALO_1746 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1746 PF00563 EAL domain SHALO_1747 PF06965 Na+/H+ antiporter 1 SHALO_1748 PF12631 MnmE helical domain SHALO_1748 PF10396 GTP-binding protein TrmE N-terminus SHALO_1748 PF01926 50S ribosome-binding GTPase SHALO_1750 PF02096 60Kd inner membrane protein SHALO_1750 PF14849 YidC periplasmic domain SHALO_1751 PF01809 Putative membrane protein insertion efficiency factor SHALO_1752 PF13193 AMP-binding enzyme C-terminal domain SHALO_1752 PF00668 Condensation domain SHALO_1752 PF00550 Phosphopantetheine attachment site SHALO_1752 PF00501 AMP-binding enzyme SHALO_1753 PF13941 MutL protein SHALO_1754 PF06368 Methylaspartate mutase E chain (MutE) SHALO_1755 PF02310 B12 binding domain SHALO_1757 PF03737 Aldolase/RraA SHALO_1760 PF07724 AAA domain (Cdc48 subfamily) SHALO_1760 PF17871 AAA lid domain SHALO_1760 PF02861 Clp amino terminal domain, pathogenicity island component SHALO_1760 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_1760 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1761 PF13180 PDZ domain SHALO_1761 PF03572 Peptidase family S41 SHALO_1762 PF01259 SAICAR synthetase SHALO_1763 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SHALO_1766 PF01553 Acyltransferase SHALO_1767 PF00183 Hsp90 protein SHALO_1769 PF03190 Protein of unknown function, DUF255 SHALO_1770 PF00581 Rhodanese-like domain SHALO_1771 PF13361 UvrD-like helicase C-terminal domain SHALO_1771 PF00580 UvrD/REP helicase N-terminal domain SHALO_1778 PF05970 PIF1-like helicase SHALO_1778 PF02689 Helicase SHALO_1782 PF08534 Redoxin SHALO_1784 PF00403 Heavy-metal-associated domain SHALO_1785 PF00403 Heavy-metal-associated domain SHALO_1786 PF01966 HD domain SHALO_1787 PF02646 RmuC family SHALO_1789 PF01795 MraW methylase family SHALO_1790 PF00202 Aminotransferase class-III SHALO_1791 PF13145 PPIC-type PPIASE domain SHALO_1792 PF02491 SHS2 domain inserted in FTSA SHALO_1793 PF12327 FtsZ family, C-terminal domain SHALO_1793 PF00091 Tubulin/FtsZ family, GTPase domain SHALO_1795 PF02390 Putative methyltransferase SHALO_1795 PF05175 Methyltransferase small domain SHALO_1795 PF17827 PrmC N-terminal domain SHALO_1796 PF01435 Peptidase family M48 SHALO_1797 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1797 PF12729 Four helix bundle sensory module for signal transduction SHALO_1797 PF00672 HAMP domain SHALO_1799 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1799 PF00672 HAMP domain SHALO_1801 PF01883 Iron-sulfur cluster assembly protein SHALO_1804 PF02705 K+ potassium transporter SHALO_1805 PF02142 MGS-like domain SHALO_1805 PF01808 AICARFT/IMPCHase bienzyme SHALO_1806 PF02600 Disulfide bond formation protein DsbB SHALO_1808 PF03061 Thioesterase superfamily SHALO_1809 PF05099 Tellurite resistance protein TerB SHALO_1809 PF00226 DnaJ domain SHALO_1810 PF00155 Aminotransferase class I and II SHALO_1814 PF09997 Predicted membrane protein (DUF2238) SHALO_1815 PF00586 AIR synthase related protein, N-terminal domain SHALO_1815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SHALO_1815 PF02769 AIR synthase related protein, C-terminal domain SHALO_1816 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1816 PF00563 EAL domain SHALO_1816 PF03707 Bacterial signalling protein N terminal repeat SHALO_1817 PF02416 mttA/Hcf106 family SHALO_1818 PF00902 Sec-independent protein translocase protein (TatC) SHALO_1819 PF02547 Queuosine biosynthesis protein SHALO_1820 PF08479 POTRA domain, ShlB-type SHALO_1820 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SHALO_1820 PF17287 POTRA domain SHALO_1821 PF13332 Hemagglutinin repeat SHALO_1821 PF05860 haemagglutination activity domain SHALO_1821 PF04829 Pre-toxin domain with VENN motif SHALO_1821 PF15526 Novel toxin 21 SHALO_1821 PF04829 Pre-toxin domain with VENN motif SHALO_1821 PF05594 Haemagluttinin repeat SHALO_1821 PF13332 Hemagglutinin repeat SHALO_1821 PF05860 haemagglutination activity domain SHALO_1821 PF15526 Novel toxin 21 SHALO_1821 PF05594 Haemagluttinin repeat SHALO_1834 PF00072 Response regulator receiver domain SHALO_1835 PF00672 HAMP domain SHALO_1835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1835 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1835 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SHALO_1835 PF00072 Response regulator receiver domain SHALO_1835 PF01627 Hpt domain SHALO_1836 PF10996 Beta-Casp domain SHALO_1836 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SHALO_1836 PF00753 Metallo-beta-lactamase superfamily SHALO_1837 PF00501 AMP-binding enzyme SHALO_1839 PF07715 TonB-dependent Receptor Plug Domain SHALO_1839 PF00593 TonB dependent receptor SHALO_1840 PF13493 Domain of unknown function (DUF4118) SHALO_1840 PF13492 GAF domain SHALO_1840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1840 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1840 PF02702 Osmosensitive K+ channel His kinase sensor domain SHALO_1841 PF00486 Transcriptional regulatory protein, C terminal SHALO_1841 PF00072 Response regulator receiver domain SHALO_1842 PF02386 Cation transport protein SHALO_1843 PF02254 TrkA-N domain SHALO_1843 PF02080 TrkA-C domain SHALO_1844 PF01641 SelR domain SHALO_1845 PF00571 CBS domain SHALO_1845 PF03471 Transporter associated domain SHALO_1845 PF01595 Cyclin M transmembrane N-terminal domain SHALO_1847 PF12804 MobA-like NTP transferase domain SHALO_1848 PF13478 XdhC Rossmann domain SHALO_1848 PF02625 XdhC and CoxI family SHALO_1849 PF14535 AMP-binding enzyme C-terminal domain SHALO_1849 PF00501 AMP-binding enzyme SHALO_1850 PF13186 Iron-sulfur cluster-binding domain SHALO_1850 PF04055 Radical SAM superfamily SHALO_1854 PF01593 Flavin containing amine oxidoreductase SHALO_1855 PF01799 [2Fe-2S] binding domain SHALO_1855 PF00111 2Fe-2S iron-sulfur cluster binding domain SHALO_1855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SHALO_1855 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SHALO_1856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1856 PF13426 PAS domain SHALO_1856 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1856 PF00672 HAMP domain SHALO_1857 PF00486 Transcriptional regulatory protein, C terminal SHALO_1857 PF00072 Response regulator receiver domain SHALO_1859 PF01292 Prokaryotic cytochrome b561 SHALO_1862 PF00486 Transcriptional regulatory protein, C terminal SHALO_1862 PF00072 Response regulator receiver domain SHALO_1864 PF16916 Dimerisation domain of Zinc Transporter SHALO_1864 PF01545 Cation efflux family SHALO_1868 PF00593 TonB dependent receptor SHALO_1868 PF07715 TonB-dependent Receptor Plug Domain SHALO_1870 PF00924 Mechanosensitive ion channel SHALO_1871 PF00982 Glycosyltransferase family 20 SHALO_1871 PF05116 Sucrose-6F-phosphate phosphohydrolase SHALO_1874 PF14437 MafB19-like deaminase SHALO_1877 PF02146 Sir2 family SHALO_1879 PF02574 Homocysteine S-methyltransferase SHALO_1879 PF00809 Pterin binding enzyme SHALO_1879 PF02965 Vitamin B12 dependent methionine synthase, activation domain SHALO_1879 PF02607 B12 binding domain SHALO_1879 PF02310 B12 binding domain SHALO_1880 PF13458 Periplasmic binding protein SHALO_1881 PF00672 HAMP domain SHALO_1881 PF02743 Cache domain SHALO_1881 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1882 PF01810 LysE type translocator SHALO_1883 PF00892 EamA-like transporter family SHALO_1884 PF00884 Sulfatase SHALO_1885 PF00909 Ammonium Transporter Family SHALO_1886 PF00543 Nitrogen regulatory protein P-II SHALO_1889 PF01966 HD domain SHALO_1890 PF02092 Glycyl-tRNA synthetase beta subunit SHALO_1893 PF00484 Carbonic anhydrase SHALO_1894 PF06865 Pyrimidine/purine nucleoside phosphorylase SHALO_1895 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1895 PF03707 Bacterial signalling protein N terminal repeat SHALO_1895 PF00563 EAL domain SHALO_1898 PF00588 SpoU rRNA Methylase family SHALO_1899 PF01842 ACT domain SHALO_1899 PF00551 Formyl transferase SHALO_1900 PF01743 Poly A polymerase head domain SHALO_1900 PF12627 Probable RNA and SrmB- binding site of polymerase A SHALO_1900 PF13735 tRNA nucleotidyltransferase domain 2 putative SHALO_1903 PF00180 Isocitrate/isopropylmalate dehydrogenase SHALO_1904 PF00694 Aconitase C-terminal domain SHALO_1905 PF00005 ABC transporter SHALO_1907 PF00873 AcrB/AcrD/AcrF family SHALO_1910 PF03372 Endonuclease/Exonuclease/phosphatase family SHALO_1913 PF09297 NADH pyrophosphatase zinc ribbon domain SHALO_1913 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SHALO_1913 PF00293 NUDIX domain SHALO_1914 PF00174 Oxidoreductase molybdopterin binding domain SHALO_1915 PF01794 Ferric reductase like transmembrane component SHALO_1917 PF00672 HAMP domain SHALO_1917 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1917 PF02743 Cache domain SHALO_1919 PF02525 Flavodoxin-like fold SHALO_1920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_1922 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1922 PF08448 PAS fold SHALO_1924 PF09962 Uncharacterized conserved protein (DUF2196) SHALO_1925 PF00271 Helicase conserved C-terminal domain SHALO_1925 PF00270 DEAD/DEAH box helicase SHALO_1925 PF00570 HRDC domain SHALO_1925 PF09382 RQC domain SHALO_1925 PF16124 RecQ zinc-binding SHALO_1928 PF00270 DEAD/DEAH box helicase SHALO_1928 PF00271 Helicase conserved C-terminal domain SHALO_1930 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1930 PF00563 EAL domain SHALO_1930 PF13426 PAS domain SHALO_1931 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1931 PF00672 HAMP domain SHALO_1932 PF00486 Transcriptional regulatory protein, C terminal SHALO_1932 PF00072 Response regulator receiver domain SHALO_1938 PF00501 AMP-binding enzyme SHALO_1938 PF16177 Acetyl-coenzyme A synthetase N-terminus SHALO_1938 PF13193 AMP-binding enzyme C-terminal domain SHALO_1940 PF00285 Citrate synthase, C-terminal domain SHALO_1941 PF03972 MmgE/PrpD family SHALO_1943 PF03831 PhnA domain SHALO_1943 PF08274 PhnA Zinc-Ribbon SHALO_1945 PF03591 AzlC protein SHALO_1947 PF00460 Flagella basal body rod protein SHALO_1947 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1948 PF00460 Flagella basal body rod protein SHALO_1948 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1949 PF04539 Sigma-70 region 3 SHALO_1949 PF04542 Sigma-70 region 2 SHALO_1949 PF00140 Sigma-70 factor, region 1.2 SHALO_1949 PF04545 Sigma-70, region 4 SHALO_1951 PF01638 HxlR-like helix-turn-helix SHALO_1953 PF03358 NADPH-dependent FMN reductase SHALO_1955 PF13193 AMP-binding enzyme C-terminal domain SHALO_1955 PF00501 AMP-binding enzyme SHALO_1955 PF16177 Acetyl-coenzyme A synthetase N-terminus SHALO_1956 PF00474 Sodium:solute symporter family SHALO_1957 PF04341 Protein of unknown function, DUF485 SHALO_1958 PF00072 Response regulator receiver domain SHALO_1958 PF00486 Transcriptional regulatory protein, C terminal SHALO_1960 PF04371 Porphyromonas-type peptidyl-arginine deiminase SHALO_1961 PF01545 Cation efflux family SHALO_1961 PF16916 Dimerisation domain of Zinc Transporter SHALO_1962 PF02421 Ferrous iron transport protein B SHALO_1962 PF07670 Nucleoside recognition SHALO_1962 PF07664 Ferrous iron transport protein B C terminus SHALO_1963 PF04023 FeoA domain SHALO_1964 PF00795 Carbon-nitrogen hydrolase SHALO_1968 PF03459 TOBE domain SHALO_1969 PF00293 NUDIX domain SHALO_1970 PF01544 CorA-like Mg2+ transporter protein SHALO_1971 PF01551 Peptidase family M23 SHALO_1971 PF04225 Opacity-associated protein A LysM-like domain SHALO_1973 PF02913 FAD linked oxidases, C-terminal domain SHALO_1973 PF01565 FAD binding domain SHALO_1974 PF03631 Virulence factor BrkB SHALO_1976 PF03796 DnaB-like helicase C terminal domain SHALO_1977 PF04551 GcpE protein SHALO_1978 PF18074 Primosomal protein N C-terminal domain SHALO_1978 PF00270 DEAD/DEAH box helicase SHALO_1978 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SHALO_1978 PF00271 Helicase conserved C-terminal domain SHALO_1979 PF07963 Prokaryotic N-terminal methylation motif SHALO_1979 PF08334 Type II secretion system (T2SS), protein G SHALO_1980 PF07963 Prokaryotic N-terminal methylation motif SHALO_1980 PF00114 Pilin (bacterial filament) SHALO_1983 PF17757 UvrB interaction domain SHALO_1983 PF02151 UvrB/uvrC motif SHALO_1983 PF12344 Ultra-violet resistance protein B SHALO_1983 PF04851 Type III restriction enzyme, res subunit SHALO_1983 PF00271 Helicase conserved C-terminal domain SHALO_1984 PF02503 Polyphosphate kinase middle domain SHALO_1984 PF13090 Polyphosphate kinase C-terminal domain 2 SHALO_1984 PF13089 Polyphosphate kinase N-terminal domain SHALO_1984 PF17941 Polyphosphate kinase C-terminal domain 1 SHALO_1985 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1986 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SHALO_1986 PF07733 Bacterial DNA polymerase III alpha NTPase domain SHALO_1986 PF02811 PHP domain SHALO_1986 PF14579 Helix-hairpin-helix motif SHALO_1986 PF00929 Exonuclease SHALO_1987 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SHALO_1988 PF00834 Ribulose-phosphate 3 epimerase family SHALO_1989 PF01960 ArgJ family SHALO_1992 PF13277 YmdB-like protein SHALO_1993 PF00271 Helicase conserved C-terminal domain SHALO_1993 PF00270 DEAD/DEAH box helicase SHALO_1993 PF02559 CarD-like/TRCF domain SHALO_1993 PF17757 UvrB interaction domain SHALO_1993 PF03461 TRCF domain SHALO_1995 PF04225 Opacity-associated protein A LysM-like domain SHALO_1995 PF01551 Peptidase family M23 SHALO_1996 PF08245 Mur ligase middle domain SHALO_1997 PF07694 5TMR of 5TMR-LYT SHALO_1997 PF00990 Diguanylate cyclase, GGDEF domain SHALO_1999 PF13603 Leucyl-tRNA synthetase, Domain 2 SHALO_1999 PF09334 tRNA synthetases class I (M) SHALO_1999 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_2000 PF07549 SecD/SecF GG Motif SHALO_2000 PF02355 Protein export membrane protein SHALO_2001 PF02355 Protein export membrane protein SHALO_2002 PF02699 Preprotein translocase subunit SHALO_2004 PF02772 S-adenosylmethionine synthetase, central domain SHALO_2004 PF00438 S-adenosylmethionine synthetase, N-terminal domain SHALO_2004 PF02773 S-adenosylmethionine synthetase, C-terminal domain SHALO_2006 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SHALO_2007 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_2007 PF07724 AAA domain (Cdc48 subfamily) SHALO_2007 PF17871 AAA lid domain SHALO_2007 PF02861 Clp amino terminal domain, pathogenicity island component SHALO_2007 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_2008 PF02617 ATP-dependent Clp protease adaptor protein ClpS SHALO_2010 PF01668 SmpB protein SHALO_2011 PF00288 GHMP kinases N terminal domain SHALO_2012 PF02599 Global regulator protein family SHALO_2013 PF01509 TruB family pseudouridylate synthase (N terminal domain) SHALO_2014 PF13361 UvrD-like helicase C-terminal domain SHALO_2014 PF00580 UvrD/REP helicase N-terminal domain SHALO_2015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2015 PF03466 LysR substrate binding domain SHALO_2019 PF00425 chorismate binding enzyme SHALO_2020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SHALO_2020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SHALO_2024 PF12833 Helix-turn-helix domain SHALO_2025 PF00392 Bacterial regulatory proteins, gntR family SHALO_2025 PF00155 Aminotransferase class I and II SHALO_2029 PF01245 Ribosomal protein L19 SHALO_2030 PF01746 tRNA (Guanine-1)-methyltransferase SHALO_2031 PF01782 RimM N-terminal domain SHALO_2033 PF00886 Ribosomal protein S16 SHALO_2034 PF00448 SRP54-type protein, GTPase domain SHALO_2034 PF02978 Signal peptide binding domain SHALO_2034 PF02881 SRP54-type protein, helical bundle domain SHALO_2035 PF00849 RNA pseudouridylate synthase SHALO_2036 PF00534 Glycosyl transferases group 1 SHALO_2036 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SHALO_2038 PF01784 NIF3 (NGG1p interacting factor 3) SHALO_2039 PF02091 Glycyl-tRNA synthetase alpha subunit SHALO_2041 PF00731 AIR carboxylase SHALO_2044 PF02811 PHP domain SHALO_2045 PF03951 Glutamine synthetase, beta-Grasp domain SHALO_2045 PF00120 Glutamine synthetase, catalytic domain SHALO_2046 PF17092 Penicillin-binding protein OB-like domain SHALO_2046 PF00912 Transglycosylase SHALO_2046 PF00905 Penicillin binding protein transpeptidase domain SHALO_2047 PF00005 ABC transporter SHALO_2047 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SHALO_2048 PF00155 Aminotransferase class I and II SHALO_2049 PF02545 Maf-like protein SHALO_2051 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_2051 PF01411 tRNA synthetases class II (A) SHALO_2051 PF02272 DHHA1 domain SHALO_2053 PF00072 Response regulator receiver domain SHALO_2053 PF00486 Transcriptional regulatory protein, C terminal SHALO_2054 PF00989 PAS fold SHALO_2054 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2054 PF13188 PAS domain SHALO_2054 PF13426 PAS domain SHALO_2055 PF00384 Molybdopterin oxidoreductase SHALO_2055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2055 PF01568 Molydopterin dinucleotide binding domain SHALO_2056 PF13247 4Fe-4S dicluster domain SHALO_2056 PF12800 4Fe-4S binding domain SHALO_2058 PF02613 Nitrate reductase delta subunit SHALO_2064 PF00762 Ferrochelatase SHALO_2066 PF02049 Flagellar hook-basal body complex protein FliE SHALO_2067 PF00460 Flagella basal body rod protein SHALO_2067 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_2068 PF00460 Flagella basal body rod protein SHALO_2069 PF01098 Cell cycle protein SHALO_2070 PF03033 Glycosyltransferase family 28 N-terminal domain SHALO_2070 PF04101 Glycosyltransferase family 28 C-terminal domain SHALO_2073 PF07670 Nucleoside recognition SHALO_2075 PF00892 EamA-like transporter family SHALO_2085 PF00117 Glutamine amidotransferase class-I SHALO_2086 PF07690 Major Facilitator Superfamily SHALO_2087 PF01553 Acyltransferase SHALO_2087 PF00501 AMP-binding enzyme SHALO_2088 PF01022 Bacterial regulatory protein, arsR family SHALO_2091 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SHALO_2092 PF04223 Citrate lyase, alpha subunit (CitF) SHALO_2093 PF03328 HpcH/HpaI aldolase/citrate lyase family SHALO_2094 PF06857 Malonate decarboxylase delta subunit (MdcD) SHALO_2095 PF08218 Citrate lyase ligase C-terminal domain SHALO_2096 PF05145 Transition state regulatory protein AbrB SHALO_2098 PF17203 Single cache domain 3 SHALO_2098 PF00989 PAS fold SHALO_2098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2098 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SHALO_2099 PF08279 HTH domain SHALO_2099 PF12431 Transcriptional regulator SHALO_2099 PF00072 Response regulator receiver domain SHALO_2100 PF01970 Tripartite tricarboxylate transporter TctA family SHALO_2103 PF00072 Response regulator receiver domain SHALO_2103 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SHALO_2103 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2103 PF00672 HAMP domain SHALO_2103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2103 PF01627 Hpt domain SHALO_2104 PF00072 Response regulator receiver domain SHALO_2105 PF07690 Major Facilitator Superfamily SHALO_2106 PF00156 Phosphoribosyl transferase domain SHALO_2107 PF00860 Permease family SHALO_2108 PF04055 Radical SAM superfamily SHALO_2111 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_2113 PF08335 GlnD PII-uridylyltransferase SHALO_2113 PF01966 HD domain SHALO_2114 PF01380 SIS domain SHALO_2116 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_2116 PF13359 DDE superfamily endonuclease SHALO_2117 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2123 PF00027 Cyclic nucleotide-binding domain SHALO_2123 PF00520 Ion transport protein SHALO_2127 PF00005 ABC transporter SHALO_2127 PF12848 ABC transporter SHALO_2128 PF00563 EAL domain SHALO_2128 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2128 PF03707 Bacterial signalling protein N terminal repeat SHALO_2129 PF13247 4Fe-4S dicluster domain SHALO_2131 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_2131 PF13359 DDE superfamily endonuclease SHALO_2132 PF13613 Helix-turn-helix of DDE superfamily endonuclease SHALO_2132 PF13359 DDE superfamily endonuclease SHALO_2134 PF00146 NADH dehydrogenase SHALO_2135 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_2136 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_2136 PF00361 Proton-conducting membrane transporter SHALO_2137 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_2137 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_2137 PF00374 Nickel-dependent hydrogenase SHALO_2139 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_2144 PF02824 TGS domain SHALO_2144 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_2144 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_2144 PF03129 Anticodon binding domain SHALO_2146 PF00899 ThiF family SHALO_2147 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2147 PF00072 Response regulator receiver domain SHALO_2150 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle SHALO_2150 PF14602 Hexapeptide repeat of succinyl-transferase SHALO_2151 PF10609 NUBPL iron-transfer P-loop NTPase SHALO_2151 PF01883 Iron-sulfur cluster assembly protein SHALO_2152 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SHALO_2152 PF02542 YgbB family SHALO_2154 PF01747 ATP-sulfurylase SHALO_2154 PF14306 PUA-like domain SHALO_2157 PF04264 YceI-like domain SHALO_2158 PF01205 Uncharacterized protein family UPF0029 SHALO_2158 PF09186 Domain of unknown function (DUF1949) SHALO_2159 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SHALO_2159 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SHALO_2160 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2162 PF08402 TOBE domain SHALO_2162 PF00005 ABC transporter SHALO_2163 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2166 PF03459 TOBE domain SHALO_2166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2167 PF07943 Penicillin-binding protein 5, C-terminal domain SHALO_2167 PF00768 D-alanyl-D-alanine carboxypeptidase SHALO_2168 PF03807 NADP oxidoreductase coenzyme F420-dependent SHALO_2168 PF14748 Pyrroline-5-carboxylate reductase dimerisation SHALO_2169 PF02687 FtsX-like permease family SHALO_2169 PF12704 MacB-like periplasmic core domain SHALO_2169 PF00005 ABC transporter SHALO_2170 PF00005 ABC transporter SHALO_2170 PF12704 MacB-like periplasmic core domain SHALO_2170 PF02687 FtsX-like permease family SHALO_2171 PF13533 Biotin-lipoyl like SHALO_2172 PF02321 Outer membrane efflux protein SHALO_2175 PF05552 Conserved TM helix SHALO_2175 PF00924 Mechanosensitive ion channel SHALO_2180 PF02311 AraC-like ligand binding domain SHALO_2180 PF12833 Helix-turn-helix domain SHALO_2188 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SHALO_2189 PF01029 NusB family SHALO_2190 PF00885 6,7-dimethyl-8-ribityllumazine synthase SHALO_2193 PF00793 DAHP synthetase I family SHALO_2194 PF00892 EamA-like transporter family SHALO_2195 PF00924 Mechanosensitive ion channel SHALO_2196 PF01926 50S ribosome-binding GTPase SHALO_2196 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SHALO_2197 PF01202 Shikimate kinase SHALO_2198 PF00579 tRNA synthetases class I (W and Y) SHALO_2199 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_2199 PF02403 Seryl-tRNA synthetase N-terminal domain SHALO_2201 PF00682 HMGL-like SHALO_2201 PF08502 LeuA allosteric (dimerisation) domain SHALO_2202 PF01066 CDP-alcohol phosphatidyltransferase SHALO_2204 PF17862 AAA+ lid domain SHALO_2204 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_2204 PF01434 Peptidase family M41 SHALO_2206 PF00072 Response regulator receiver domain SHALO_2207 PF00977 Histidine biosynthesis protein SHALO_2208 PF00117 Glutamine amidotransferase class-I SHALO_2210 PF18527 STT3/PglB C-terminal beta-barrel domain SHALO_2210 PF02516 Oligosaccharyl transferase STT3 subunit SHALO_2211 PF02719 Polysaccharide biosynthesis protein SHALO_2212 PF00953 Glycosyl transferase family 4 SHALO_2214 PF01370 NAD dependent epimerase/dehydratase family SHALO_2215 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_2218 PF00535 Glycosyl transferase family 2 SHALO_2218 PF02709 N-terminal domain of galactosyltransferase SHALO_2220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_2221 PF01370 NAD dependent epimerase/dehydratase family SHALO_2222 PF16363 GDP-mannose 4,6 dehydratase SHALO_2223 PF07836 DmpG-like communication domain SHALO_2223 PF00682 HMGL-like SHALO_2224 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_2224 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SHALO_2225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_2225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_2225 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_2226 PF16363 GDP-mannose 4,6 dehydratase SHALO_2227 PF00483 Nucleotidyl transferase SHALO_2228 PF01370 NAD dependent epimerase/dehydratase family SHALO_2230 PF16363 GDP-mannose 4,6 dehydratase SHALO_2231 PF01050 Mannose-6-phosphate isomerase SHALO_2231 PF00483 Nucleotidyl transferase SHALO_2232 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SHALO_2232 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SHALO_2232 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SHALO_2233 PF01068 ATP dependent DNA ligase domain SHALO_2233 PF14743 DNA ligase OB-like domain SHALO_2234 PF16363 GDP-mannose 4,6 dehydratase SHALO_2235 PF00483 Nucleotidyl transferase SHALO_2236 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SHALO_2236 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SHALO_2236 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SHALO_2236 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SHALO_2246 PF13580 SIS domain SHALO_2247 PF01467 Cytidylyltransferase-like SHALO_2247 PF00294 pfkB family carbohydrate kinase SHALO_2252 PF00403 Heavy-metal-associated domain SHALO_2253 PF00563 EAL domain SHALO_2253 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2253 PF08448 PAS fold SHALO_2254 PF00892 EamA-like transporter family SHALO_2255 PF00072 Response regulator receiver domain SHALO_2256 PF08534 Redoxin SHALO_2259 PF00677 Lumazine binding domain SHALO_2260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2260 PF02743 Cache domain SHALO_2260 PF00672 HAMP domain SHALO_2261 PF02626 Carboxyltransferase domain, subdomain A and B SHALO_2263 PF03746 LamB/YcsF family SHALO_2264 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SHALO_2267 PF00072 Response regulator receiver domain SHALO_2268 PF00672 HAMP domain SHALO_2268 PF17200 Single Cache domain 2 SHALO_2268 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2269 PF13932 GidA associated domain SHALO_2269 PF01134 Glucose inhibited division protein A SHALO_2270 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHALO_2270 PF00355 Rieske [2Fe-2S] domain SHALO_2271 PF00033 Cytochrome b/b6/petB SHALO_2271 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_2274 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SHALO_2275 PF02801 Beta-ketoacyl synthase, C-terminal domain SHALO_2275 PF00109 Beta-ketoacyl synthase, N-terminal domain SHALO_2276 PF00550 Phosphopantetheine attachment site SHALO_2278 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SHALO_2278 PF01676 Metalloenzyme superfamily SHALO_2279 PF00953 Glycosyl transferase family 4 SHALO_2279 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SHALO_2280 PF08245 Mur ligase middle domain SHALO_2282 PF02397 Bacterial sugar transferase SHALO_2283 PF01695 IstB-like ATP binding protein SHALO_2284 PF02796 Helix-turn-helix domain of resolvase SHALO_2284 PF00665 Integrase core domain SHALO_2285 PF01061 ABC-2 type transporter SHALO_2286 PF16363 GDP-mannose 4,6 dehydratase SHALO_2287 PF04321 RmlD substrate binding domain SHALO_2288 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SHALO_2289 PF00483 Nucleotidyl transferase SHALO_2290 PF16363 GDP-mannose 4,6 dehydratase SHALO_2291 PF01568 Molydopterin dinucleotide binding domain SHALO_2291 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2291 PF00384 Molybdopterin oxidoreductase SHALO_2293 PF13247 4Fe-4S dicluster domain SHALO_2294 PF00989 PAS fold SHALO_2294 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2294 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2294 PF08447 PAS fold SHALO_2295 PF00486 Transcriptional regulatory protein, C terminal SHALO_2295 PF00072 Response regulator receiver domain SHALO_2298 PF00563 EAL domain SHALO_2298 PF12792 CSS motif domain associated with EAL SHALO_2301 PF03649 Uncharacterised protein family (UPF0014) SHALO_2302 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_2302 PF00289 Biotin carboxylase, N-terminal domain SHALO_2302 PF02785 Biotin carboxylase C-terminal domain SHALO_2305 PF01384 Phosphate transporter family SHALO_2306 PF00271 Helicase conserved C-terminal domain SHALO_2306 PF00270 DEAD/DEAH box helicase SHALO_2307 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SHALO_2311 PF02222 ATP-grasp domain SHALO_2312 PF00654 Voltage gated chloride channel SHALO_2314 PF00465 Iron-containing alcohol dehydrogenase SHALO_2317 PF03352 Methyladenine glycosylase SHALO_2317 PF00117 Glutamine amidotransferase class-I SHALO_2317 PF00958 GMP synthase C terminal domain SHALO_2317 PF13673 Acetyltransferase (GNAT) domain SHALO_2317 PF13302 Acetyltransferase (GNAT) domain SHALO_2319 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_2320 PF05736 OprF membrane domain SHALO_2320 PF00691 OmpA family SHALO_2321 PF05552 Conserved TM helix SHALO_2321 PF00924 Mechanosensitive ion channel SHALO_2323 PF13419 Haloacid dehalogenase-like hydrolase SHALO_2324 PF10371 Domain of unknown function SHALO_2324 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SHALO_2324 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_2324 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_2324 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_2325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SHALO_2325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SHALO_2330 PF02664 S-Ribosylhomocysteinase (LuxS) SHALO_2331 PF00375 Sodium:dicarboxylate symporter family SHALO_2332 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_2335 PF00529 HlyD membrane-fusion protein of T1SS SHALO_2335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_2336 PF00873 AcrB/AcrD/AcrF family SHALO_2337 PF02321 Outer membrane efflux protein SHALO_2338 PF07690 Major Facilitator Superfamily SHALO_2339 PF07690 Major Facilitator Superfamily SHALO_2341 PF00999 Sodium/hydrogen exchanger family SHALO_2342 PF02562 PhoH-like protein SHALO_2347 PF04055 Radical SAM superfamily SHALO_2348 PF06508 Queuosine biosynthesis protein QueC SHALO_2349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2349 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2350 PF02525 Flavodoxin-like fold SHALO_2351 PF01638 HxlR-like helix-turn-helix SHALO_2354 PF03061 Thioesterase superfamily SHALO_2355 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2355 PF11808 Phosphate regulon sensor protein PhoR SHALO_2355 PF00989 PAS fold SHALO_2356 PF00072 Response regulator receiver domain SHALO_2356 PF00486 Transcriptional regulatory protein, C terminal SHALO_2357 PF01895 PhoU domain SHALO_2360 PF17202 Single cache domain 3 SHALO_2360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2360 PF00672 HAMP domain SHALO_2361 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SHALO_2362 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2362 PF17202 Single cache domain 3 SHALO_2362 PF00672 HAMP domain SHALO_2363 PF12849 PBP superfamily domain SHALO_2364 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2365 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2366 PF00005 ABC transporter SHALO_2369 PF00672 HAMP domain SHALO_2369 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2369 PF02743 Cache domain SHALO_2373 PF04205 FMN-binding domain SHALO_2373 PF00890 FAD binding domain SHALO_2376 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SHALO_2377 PF00380 Ribosomal protein S9/S16 SHALO_2378 PF00572 Ribosomal protein L13 SHALO_2379 PF12705 PD-(D/E)XK nuclease superfamily SHALO_2379 PF13361 UvrD-like helicase C-terminal domain SHALO_2379 PF00580 UvrD/REP helicase N-terminal domain SHALO_2384 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SHALO_2384 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_2387 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_2388 PF00486 Transcriptional regulatory protein, C terminal SHALO_2388 PF00072 Response regulator receiver domain SHALO_2389 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2391 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SHALO_2391 PF00117 Glutamine amidotransferase class-I SHALO_2395 PF00709 Adenylosuccinate synthetase SHALO_2396 PF13393 Histidyl-tRNA synthetase SHALO_2397 PF00266 Aminotransferase class-V SHALO_2398 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2398 PF00672 HAMP domain SHALO_2398 PF02743 Cache domain SHALO_2399 PF00672 HAMP domain SHALO_2399 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2400 PF13419 Haloacid dehalogenase-like hydrolase SHALO_2401 PF00456 Transketolase, thiamine diphosphate binding domain SHALO_2401 PF02779 Transketolase, pyrimidine binding domain SHALO_2401 PF02780 Transketolase, C-terminal domain SHALO_2402 PF00348 Polyprenyl synthetase SHALO_2403 PF13180 PDZ domain SHALO_2403 PF03572 Peptidase family S41 SHALO_2403 PF01471 Putative peptidoglycan binding domain SHALO_2404 PF02575 YbaB/EbfC DNA-binding family SHALO_2405 PF02261 Aspartate decarboxylase SHALO_2406 PF02875 Mur ligase family, glutamate ligase domain SHALO_2406 PF08245 Mur ligase middle domain SHALO_2409 PF01196 Ribosomal protein L17 SHALO_2410 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SHALO_2410 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SHALO_2410 PF01000 RNA polymerase Rpb3/RpoA insert domain SHALO_2411 PF00163 Ribosomal protein S4/S9 N-terminal domain SHALO_2411 PF01479 S4 domain SHALO_2412 PF00411 Ribosomal protein S11 SHALO_2413 PF00416 Ribosomal protein S13/S18 SHALO_2414 PF00444 Ribosomal protein L36 SHALO_2415 PF01176 Translation initiation factor 1A / IF-1 SHALO_2416 PF00557 Metallopeptidase family M24 SHALO_2417 PF00344 SecY translocase SHALO_2418 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SHALO_2419 PF00333 Ribosomal protein S5, N-terminal domain SHALO_2419 PF03719 Ribosomal protein S5, C-terminal domain SHALO_2420 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SHALO_2421 PF00347 Ribosomal protein L6 SHALO_2422 PF00410 Ribosomal protein S8 SHALO_2423 PF00253 Ribosomal protein S14p/S29e SHALO_2424 PF00281 Ribosomal protein L5 SHALO_2424 PF00673 ribosomal L5P family C-terminus SHALO_2425 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SHALO_2425 PF00467 KOW motif SHALO_2426 PF00238 Ribosomal protein L14p/L23e SHALO_2427 PF00366 Ribosomal protein S17 SHALO_2428 PF00831 Ribosomal L29 protein SHALO_2429 PF00252 Ribosomal protein L16p/L10e SHALO_2430 PF00189 Ribosomal protein S3, C-terminal domain SHALO_2430 PF07650 KH domain SHALO_2431 PF00237 Ribosomal protein L22p/L17e SHALO_2432 PF00203 Ribosomal protein S19 SHALO_2433 PF00181 Ribosomal Proteins L2, RNA binding domain SHALO_2433 PF03947 Ribosomal Proteins L2, C-terminal domain SHALO_2434 PF00276 Ribosomal protein L23 SHALO_2435 PF00573 Ribosomal protein L4/L1 family SHALO_2436 PF00297 Ribosomal protein L3 SHALO_2437 PF00338 Ribosomal protein S10p/S20e SHALO_2440 PF01351 Ribonuclease HII SHALO_2441 PF03239 Iron permease FTR1 family SHALO_2442 PF10634 Fe2+ transport protein SHALO_2446 PF02687 FtsX-like permease family SHALO_2446 PF12704 MacB-like periplasmic core domain SHALO_2446 PF00005 ABC transporter SHALO_2450 PF07670 Nucleoside recognition SHALO_2450 PF02421 Ferrous iron transport protein B SHALO_2450 PF07664 Ferrous iron transport protein B C terminus SHALO_2451 PF01264 Chorismate synthase SHALO_2452 PF00035 Double-stranded RNA binding motif SHALO_2452 PF14622 Ribonuclease-III-like SHALO_2453 PF00075 RNase H SHALO_2455 PF16730 DnaG-primase C-terminal, helicase-binding domain SHALO_2455 PF13662 Toprim domain SHALO_2455 PF01807 CHC2 zinc finger SHALO_2455 PF08275 DNA primase catalytic core, N-terminal domain SHALO_2456 PF00764 Arginosuccinate synthase SHALO_2457 PF00072 Response regulator receiver domain SHALO_2459 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2459 PF03707 Bacterial signalling protein N terminal repeat SHALO_2459 PF00563 EAL domain SHALO_2460 PF00072 Response regulator receiver domain SHALO_2461 PF08447 PAS fold SHALO_2461 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2462 PF01339 CheB methylesterase SHALO_2462 PF00072 Response regulator receiver domain SHALO_2463 PF03975 CheD chemotactic sensory transduction SHALO_2464 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2464 PF00672 HAMP domain SHALO_2464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2465 PF01739 CheR methyltransferase, SAM binding domain SHALO_2465 PF03705 CheR methyltransferase, all-alpha domain SHALO_2466 PF09078 CheY binding SHALO_2466 PF02895 Signal transducing histidine kinase, homodimeric domain SHALO_2466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2466 PF01627 Hpt domain SHALO_2466 PF01584 CheW-like domain SHALO_2468 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2468 PF02203 Tar ligand binding domain homologue SHALO_2468 PF00672 HAMP domain SHALO_2469 PF01584 CheW-like domain SHALO_2475 PF02872 5'-nucleotidase, C-terminal domain SHALO_2475 PF00149 Calcineurin-like phosphoesterase SHALO_2486 PF02683 Cytochrome C biogenesis protein transmembrane region SHALO_2487 PF01966 HD domain SHALO_2499 PF07290 Protein of unknown function (DUF1449) SHALO_2500 PF01145 SPFH domain / Band 7 family SHALO_2500 PF15975 Flotillin SHALO_2515 PF00593 TonB dependent receptor SHALO_2515 PF07715 TonB-dependent Receptor Plug Domain SHALO_2516 PF00072 Response regulator receiver domain SHALO_2516 PF00486 Transcriptional regulatory protein, C terminal SHALO_2517 PF12282 Signal transduction histidine kinase SHALO_2517 PF07568 Histidine kinase SHALO_2517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2519 PF04023 FeoA domain SHALO_2519 PF07670 Nucleoside recognition SHALO_2519 PF07664 Ferrous iron transport protein B C terminus SHALO_2519 PF17910 FeoB cytosolic helical domain SHALO_2519 PF02421 Ferrous iron transport protein B SHALO_2520 PF04023 FeoA domain SHALO_2522 PF07715 TonB-dependent Receptor Plug Domain SHALO_2522 PF00593 TonB dependent receptor SHALO_2525 PF11806 Domain of unknown function (DUF3327) SHALO_2525 PF00756 Putative esterase SHALO_2526 PF07715 TonB-dependent Receptor Plug Domain SHALO_2526 PF00593 TonB dependent receptor SHALO_2528 PF02472 Biopolymer transport protein ExbD/TolR SHALO_2529 PF01618 MotA/TolQ/ExbB proton channel family SHALO_2530 PF01545 Cation efflux family SHALO_2531 PF02659 Putative manganese efflux pump SHALO_2532 PF07690 Major Facilitator Superfamily SHALO_2534 PF00664 ABC transporter transmembrane region SHALO_2534 PF00005 ABC transporter SHALO_2535 PF08021 Siderophore-interacting FAD-binding domain SHALO_2535 PF00005 ABC transporter SHALO_2535 PF00664 ABC transporter transmembrane region SHALO_2535 PF04954 Siderophore-interacting protein SHALO_2536 PF07715 TonB-dependent Receptor Plug Domain SHALO_2536 PF00593 TonB dependent receptor SHALO_2537 PF00593 TonB dependent receptor SHALO_2537 PF07715 TonB-dependent Receptor Plug Domain SHALO_2538 PF12833 Helix-turn-helix domain SHALO_2538 PF06445 GyrI-like small molecule binding domain SHALO_2539 PF12833 Helix-turn-helix domain SHALO_2539 PF02311 AraC-like ligand binding domain SHALO_2540 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2540 PF17158 Membrane-associated sensor, integral membrane domain SHALO_2545 PF00005 ABC transporter SHALO_2546 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2547 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2548 PF13419 Haloacid dehalogenase-like hydrolase SHALO_2549 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SHALO_2551 PF03824 High-affinity nickel-transport protein SHALO_2552 PF03824 High-affinity nickel-transport protein SHALO_2554 PF00258 Flavodoxin SHALO_2556 PF01810 LysE type translocator SHALO_2557 PF01370 NAD dependent epimerase/dehydratase family SHALO_2557 PF08338 Domain of unknown function (DUF1731) SHALO_2560 PF00005 ABC transporter SHALO_2560 PF02687 FtsX-like permease family SHALO_2560 PF12704 MacB-like periplasmic core domain SHALO_2563 PF01810 LysE type translocator SHALO_2565 PF03707 Bacterial signalling protein N terminal repeat SHALO_2565 PF00563 EAL domain SHALO_2565 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2566 PF00892 EamA-like transporter family SHALO_2567 PF00486 Transcriptional regulatory protein, C terminal SHALO_2567 PF00072 Response regulator receiver domain SHALO_2568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2568 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2568 PF08521 Two-component sensor kinase N-terminal SHALO_2569 PF08019 Phosphoethanolamine transferase EptA/EptB SHALO_2569 PF00884 Sulfatase SHALO_2571 PF00563 EAL domain SHALO_2571 PF12792 CSS motif domain associated with EAL SHALO_2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2574 PF08447 PAS fold SHALO_2574 PF00989 PAS fold SHALO_2574 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2575 PF02743 Cache domain SHALO_2575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2575 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2576 PF00072 Response regulator receiver domain SHALO_2576 PF00486 Transcriptional regulatory protein, C terminal SHALO_2577 PF13426 PAS domain SHALO_2577 PF08447 PAS fold SHALO_2577 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2579 PF02001 Protein of unknown function DUF134 SHALO_2580 PF02673 Bacitracin resistance protein BacA SHALO_2581 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SHALO_2581 PF13378 Enolase C-terminal domain-like SHALO_2582 PF03180 NLPA lipoprotein SHALO_2583 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2585 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SHALO_2586 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SHALO_2587 PF01869 BadF/BadG/BcrA/BcrD ATPase family SHALO_2591 PF00529 HlyD membrane-fusion protein of T1SS SHALO_2591 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_2592 PF00005 ABC transporter SHALO_2592 PF03412 Peptidase C39 family SHALO_2592 PF00664 ABC transporter transmembrane region SHALO_2600 PF01938 TRAM domain SHALO_2600 PF05958 tRNA (Uracil-5-)-methyltransferase SHALO_2601 PF00593 TonB dependent receptor SHALO_2601 PF07715 TonB-dependent Receptor Plug Domain SHALO_2602 PF10415 Fumarase C C-terminus SHALO_2602 PF00206 Lyase SHALO_2603 PF10415 Fumarase C C-terminus SHALO_2603 PF00206 Lyase SHALO_2604 PF03605 Anaerobic c4-dicarboxylate membrane transporter SHALO_2605 PF17763 Glutaminase/Asparaginase C-terminal domain SHALO_2605 PF00710 Asparaginase, N-terminal SHALO_2606 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2607 PF00486 Transcriptional regulatory protein, C terminal SHALO_2607 PF00072 Response regulator receiver domain SHALO_2610 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2613 PF02661 Fic/DOC family SHALO_2613 PF13784 Fic/DOC family N-terminal SHALO_2616 PF00005 ABC transporter SHALO_2619 PF05573 NosL SHALO_2621 PF05140 ResB-like family SHALO_2621 PF01578 Cytochrome C assembly protein SHALO_2622 PF03916 Polysulphide reductase, NrfD SHALO_2623 PF00037 4Fe-4S binding domain SHALO_2623 PF13247 4Fe-4S dicluster domain SHALO_2624 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SHALO_2624 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_2626 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2626 PF00989 PAS fold SHALO_2626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2627 PF00072 Response regulator receiver domain SHALO_2627 PF00486 Transcriptional regulatory protein, C terminal SHALO_2628 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2628 PF00672 HAMP domain SHALO_2628 PF02743 Cache domain SHALO_2630 PF01638 HxlR-like helix-turn-helix SHALO_2631 PF02525 Flavodoxin-like fold SHALO_2632 PF11799 impB/mucB/samB family C-terminal domain SHALO_2632 PF00817 impB/mucB/samB family SHALO_2632 PF11798 IMS family HHH motif SHALO_2637 PF02472 Biopolymer transport protein ExbD/TolR SHALO_2638 PF01618 MotA/TolQ/ExbB proton channel family SHALO_2639 PF02769 AIR synthase related protein, C-terminal domain SHALO_2639 PF00586 AIR synthase related protein, N-terminal domain SHALO_2640 PF01206 Sulfurtransferase TusA SHALO_2642 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_2644 PF00563 EAL domain SHALO_2644 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2644 PF05231 MASE1 SHALO_2644 PF08447 PAS fold SHALO_2644 PF08448 PAS fold SHALO_2644 PF13426 PAS domain SHALO_2646 PF07690 Major Facilitator Superfamily SHALO_2650 PF00005 ABC transporter SHALO_2651 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2652 PF12849 PBP superfamily domain SHALO_2654 PF02634 FdhD/NarQ family SHALO_2656 PF13247 4Fe-4S dicluster domain SHALO_2661 PF00005 ABC transporter SHALO_2664 PF00296 Luciferase-like monooxygenase SHALO_2667 PF02472 Biopolymer transport protein ExbD/TolR SHALO_2668 PF01618 MotA/TolQ/ExbB proton channel family SHALO_2669 PF03459 TOBE domain SHALO_2669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2674 PF13649 Methyltransferase domain SHALO_2675 PF03459 TOBE domain SHALO_2676 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SHALO_2678 PF12833 Helix-turn-helix domain SHALO_2678 PF02311 AraC-like ligand binding domain SHALO_2681 PF02311 AraC-like ligand binding domain SHALO_2681 PF12833 Helix-turn-helix domain SHALO_2683 PF13247 4Fe-4S dicluster domain SHALO_2689 PF00989 PAS fold SHALO_2689 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2690 PF00072 Response regulator receiver domain SHALO_2690 PF00486 Transcriptional regulatory protein, C terminal SHALO_2691 PF03841 L-seryl-tRNA selenium transferase SHALO_2692 PF09106 Elongation factor SelB, winged helix SHALO_2692 PF09105 Elongation factor SelB, winged helix SHALO_2692 PF03144 Elongation factor Tu domain 2 SHALO_2692 PF00009 Elongation factor Tu GTP binding domain SHALO_2692 PF09107 Elongation factor SelB, winged helix SHALO_2693 PF02754 Cysteine-rich domain SHALO_2694 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_2694 PF13183 4Fe-4S dicluster domain SHALO_2695 PF00890 FAD binding domain SHALO_2695 PF02910 Fumarate reductase flavoprotein C-term SHALO_2697 PF01047 MarR family SHALO_2698 PF04264 YceI-like domain SHALO_2699 PF17954 Quercetinase C-terminal cupin domain SHALO_2699 PF02678 Pirin SHALO_2706 PF00486 Transcriptional regulatory protein, C terminal SHALO_2706 PF00072 Response regulator receiver domain SHALO_2707 PF00672 HAMP domain SHALO_2707 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2707 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2708 PF01965 DJ-1/PfpI family SHALO_2713 PF00221 Aromatic amino acid lyase SHALO_2718 PF13193 AMP-binding enzyme C-terminal domain SHALO_2718 PF00501 AMP-binding enzyme SHALO_2718 PF16177 Acetyl-coenzyme A synthetase N-terminus SHALO_2721 PF12697 Alpha/beta hydrolase family SHALO_2724 PF02801 Beta-ketoacyl synthase, C-terminal domain SHALO_2724 PF00109 Beta-ketoacyl synthase, N-terminal domain SHALO_2725 PF00550 Phosphopantetheine attachment site SHALO_2726 PF00271 Helicase conserved C-terminal domain SHALO_2726 PF00270 DEAD/DEAH box helicase SHALO_2729 PF01810 LysE type translocator SHALO_2733 PF01841 Transglutaminase-like superfamily SHALO_2735 PF02086 D12 class N6 adenine-specific DNA methyltransferase SHALO_2736 PF00072 Response regulator receiver domain SHALO_2737 PF01425 Amidase SHALO_2738 PF01425 Amidase SHALO_2739 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_2739 PF00289 Biotin carboxylase, N-terminal domain SHALO_2739 PF02785 Biotin carboxylase C-terminal domain SHALO_2741 PF09347 Domain of unknown function (DUF1989) SHALO_2742 PF08402 TOBE domain SHALO_2742 PF00005 ABC transporter SHALO_2743 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2745 PF00989 PAS fold SHALO_2745 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2746 PF00072 Response regulator receiver domain SHALO_2746 PF00486 Transcriptional regulatory protein, C terminal SHALO_2748 PF00593 TonB dependent receptor SHALO_2748 PF07660 Secretin and TonB N terminus short domain SHALO_2748 PF07715 TonB-dependent Receptor Plug Domain SHALO_2751 PF00486 Transcriptional regulatory protein, C terminal SHALO_2751 PF00072 Response regulator receiver domain SHALO_2752 PF13493 Domain of unknown function (DUF4118) SHALO_2752 PF02702 Osmosensitive K+ channel His kinase sensor domain SHALO_2752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2752 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2753 PF02669 K+-transporting ATPase, c chain SHALO_2755 PF03814 Potassium-transporting ATPase A subunit SHALO_2757 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SHALO_2758 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2758 PF00672 HAMP domain SHALO_2759 PF00106 short chain dehydrogenase SHALO_2761 PF03435 Saccharopine dehydrogenase NADP binding domain SHALO_2761 PF16653 Saccharopine dehydrogenase C-terminal domain SHALO_2762 PF01725 Ham1 family SHALO_2763 PF06725 3D domain SHALO_2763 PF03562 MltA specific insert domain SHALO_2765 PF07690 Major Facilitator Superfamily SHALO_2766 PF09335 SNARE associated Golgi protein SHALO_2770 PF03453 MoeA N-terminal region (domain I and II) SHALO_2770 PF03454 MoeA C-terminal region (domain IV) SHALO_2770 PF00994 Probable molybdopterin binding domain SHALO_2771 PF02391 MoaE protein SHALO_2773 PF01106 NifU-like domain SHALO_2773 PF01592 NifU-like N terminal domain SHALO_2773 PF04324 BFD-like [2Fe-2S] binding domain SHALO_2774 PF00266 Aminotransferase class-V SHALO_2775 PF18269 T3SS EscN ATPase C-terminal domain SHALO_2775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_2776 PF01227 GTP cyclohydrolase I SHALO_2777 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_2777 PF05698 Bacterial trigger factor protein (TF) C-terminus SHALO_2777 PF05697 Bacterial trigger factor protein (TF) SHALO_2778 PF00574 Clp protease SHALO_2780 PF01327 Polypeptide deformylase SHALO_2781 PF13335 Magnesium chelatase, subunit ChlI C-terminal SHALO_2781 PF01078 Magnesium chelatase, subunit ChlI SHALO_2782 PF03853 YjeF-related protein N-terminus SHALO_2782 PF01256 Carbohydrate kinase SHALO_2783 PF00551 Formyl transferase SHALO_2784 PF05690 Thiazole biosynthesis protein ThiG SHALO_2795 PF02613 Nitrate reductase delta subunit SHALO_2797 PF13247 4Fe-4S dicluster domain SHALO_2797 PF00037 4Fe-4S binding domain SHALO_2798 PF00384 Molybdopterin oxidoreductase SHALO_2798 PF01568 Molydopterin dinucleotide binding domain SHALO_2798 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2802 PF00486 Transcriptional regulatory protein, C terminal SHALO_2802 PF00072 Response regulator receiver domain SHALO_2803 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2803 PF00672 HAMP domain SHALO_2805 PF00171 Aldehyde dehydrogenase family SHALO_2808 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_2808 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_2808 PF01842 ACT domain SHALO_2812 PF03824 High-affinity nickel-transport protein SHALO_2813 PF17674 HHH domain SHALO_2813 PF16921 Tex protein YqgF-like domain SHALO_2813 PF00575 S1 RNA binding domain SHALO_2813 PF09371 Tex-like protein N-terminal domain SHALO_2816 PF00881 Nitroreductase family SHALO_2818 PF00939 Sodium:sulfate symporter transmembrane region SHALO_2819 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_2819 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_2823 PF00005 ABC transporter SHALO_2824 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_2825 PF09209 Tetracyclin repressor-like, C-terminal domain SHALO_2825 PF00440 Bacterial regulatory proteins, tetR family SHALO_2831 PF00890 FAD binding domain SHALO_2831 PF04205 FMN-binding domain SHALO_2836 PF13673 Acetyltransferase (GNAT) domain SHALO_2837 PF03358 NADPH-dependent FMN reductase SHALO_2839 PF00873 AcrB/AcrD/AcrF family SHALO_2840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SHALO_2840 PF00529 HlyD membrane-fusion protein of T1SS SHALO_2844 PF00486 Transcriptional regulatory protein, C terminal SHALO_2844 PF00072 Response regulator receiver domain SHALO_2845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2845 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2845 PF13426 PAS domain SHALO_2845 PF00672 HAMP domain SHALO_2846 PF08402 TOBE domain SHALO_2846 PF00005 ABC transporter SHALO_2847 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2848 PF13416 Bacterial extracellular solute-binding protein SHALO_2849 PF00080 Copper/zinc superoxide dismutase (SODC) SHALO_2851 PF01507 Phosphoadenosine phosphosulfate reductase family SHALO_2852 PF01507 Phosphoadenosine phosphosulfate reductase family SHALO_2853 PF00009 Elongation factor Tu GTP binding domain SHALO_2855 PF00899 ThiF family SHALO_2857 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SHALO_2857 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SHALO_2858 PF14824 Sirohaem biosynthesis protein central SHALO_2858 PF10414 Sirohaem synthase dimerisation region SHALO_2858 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_2859 PF01053 Cys/Met metabolism PLP-dependent enzyme SHALO_2864 PF00072 Response regulator receiver domain SHALO_2864 PF00486 Transcriptional regulatory protein, C terminal SHALO_2865 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2865 PF00672 HAMP domain SHALO_2865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2867 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2872 PF11412 Disulphide bond corrector protein DsbC SHALO_2872 PF02683 Cytochrome C biogenesis protein transmembrane region SHALO_2873 PF01451 Low molecular weight phosphotyrosine protein phosphatase SHALO_2874 PF02040 Arsenical pump membrane protein SHALO_2875 PF01451 Low molecular weight phosphotyrosine protein phosphatase SHALO_2876 PF00355 Rieske [2Fe-2S] domain SHALO_2877 PF00384 Molybdopterin oxidoreductase SHALO_2877 PF01568 Molydopterin dinucleotide binding domain SHALO_2877 PF18465 Rieske 3Fe-4S SHALO_2880 PF00005 ABC transporter SHALO_2880 PF02687 FtsX-like permease family SHALO_2880 PF12704 MacB-like periplasmic core domain SHALO_2881 PF00005 ABC transporter SHALO_2882 PF00072 Response regulator receiver domain SHALO_2882 PF02954 Bacterial regulatory protein, Fis family SHALO_2882 PF00158 Sigma-54 interaction domain SHALO_2883 PF13426 PAS domain SHALO_2883 PF08448 PAS fold SHALO_2883 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2883 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2883 PF00072 Response regulator receiver domain SHALO_2886 PF00384 Molybdopterin oxidoreductase SHALO_2886 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2886 PF01568 Molydopterin dinucleotide binding domain SHALO_2887 PF13247 4Fe-4S dicluster domain SHALO_2888 PF12849 PBP superfamily domain SHALO_2889 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2889 PF02743 Cache domain SHALO_2889 PF00672 HAMP domain SHALO_2891 PF03741 Integral membrane protein TerC family SHALO_2892 PF02621 Menaquinone biosynthesis SHALO_2893 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SHALO_2893 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SHALO_2895 PF00390 Malic enzyme, N-terminal domain SHALO_2895 PF03949 Malic enzyme, NAD binding domain SHALO_2895 PF01515 Phosphate acetyl/butaryl transferase SHALO_2896 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_2898 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_2898 PF00289 Biotin carboxylase, N-terminal domain SHALO_2898 PF02785 Biotin carboxylase C-terminal domain SHALO_2899 PF00364 Biotin-requiring enzyme SHALO_2900 PF00692 dUTPase SHALO_2903 PF17785 PUA-like domain SHALO_2903 PF10672 S-adenosylmethionine-dependent methyltransferase SHALO_2906 PF07196 Flagellin hook IN motif SHALO_2906 PF00700 Bacterial flagellin C-terminal helical region SHALO_2906 PF00669 Bacterial flagellin N-terminal helical region SHALO_2907 PF02719 Polysaccharide biosynthesis protein SHALO_2908 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_2909 PF02348 Cytidylyltransferase SHALO_2912 PF08666 SAF domain SHALO_2912 PF03102 NeuB family SHALO_2913 PF01370 NAD dependent epimerase/dehydratase family SHALO_2916 PF00733 Asparagine synthase SHALO_2916 PF13537 Glutamine amidotransferase domain SHALO_2919 PF05050 Methyltransferase FkbM domain SHALO_2921 PF16363 GDP-mannose 4,6 dehydratase SHALO_2928 PF00669 Bacterial flagellin N-terminal helical region SHALO_2928 PF00700 Bacterial flagellin C-terminal helical region SHALO_2928 PF07196 Flagellin hook IN motif SHALO_2929 PF01396 Topoisomerase DNA binding C4 zinc finger SHALO_2929 PF01131 DNA topoisomerase SHALO_2929 PF01751 Toprim domain SHALO_2930 PF04055 Radical SAM superfamily SHALO_2930 PF06968 Biotin and Thiamin Synthesis associated domain SHALO_2931 PF00285 Citrate synthase, C-terminal domain SHALO_2934 PF03952 Enolase, N-terminal domain SHALO_2934 PF00113 Enolase, C-terminal TIM barrel domain SHALO_2935 PF00154 recA bacterial DNA recombination protein SHALO_2936 PF02621 Menaquinone biosynthesis SHALO_2937 PF01313 Bacterial export proteins, family 3 SHALO_2938 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SHALO_2939 PF00814 Glycoprotease family SHALO_2941 PF00990 Diguanylate cyclase, GGDEF domain SHALO_2941 PF00563 EAL domain SHALO_2941 PF03707 Bacterial signalling protein N terminal repeat SHALO_2945 PF00149 Calcineurin-like phosphoesterase SHALO_2946 PF01235 Sodium:alanine symporter family SHALO_2947 PF00860 Permease family SHALO_2948 PF13288 DXP reductoisomerase C-terminal domain SHALO_2948 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SHALO_2948 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SHALO_2952 PF02595 Glycerate kinase family SHALO_2953 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SHALO_2953 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_2957 PF00199 Catalase SHALO_2957 PF06628 Catalase-related immune-responsive SHALO_2958 PF13545 Crp-like helix-turn-helix domain SHALO_2958 PF00027 Cyclic nucleotide-binding domain SHALO_2960 PF00330 Aconitase family (aconitate hydratase) SHALO_2961 PF12804 MobA-like NTP transferase domain SHALO_2966 PF02253 Phospholipase A1 SHALO_2967 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SHALO_2968 PF01967 MoaC family SHALO_2977 PF13247 4Fe-4S dicluster domain SHALO_2978 PF00384 Molybdopterin oxidoreductase SHALO_2978 PF01568 Molydopterin dinucleotide binding domain SHALO_2979 PF00581 Rhodanese-like domain SHALO_2981 PF10609 NUBPL iron-transfer P-loop NTPase SHALO_2990 PF01027 Inhibitor of apoptosis-promoting Bax1 SHALO_2993 PF13247 4Fe-4S dicluster domain SHALO_2994 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2994 PF00384 Molybdopterin oxidoreductase SHALO_2994 PF01568 Molydopterin dinucleotide binding domain SHALO_2996 PF03466 LysR substrate binding domain SHALO_2996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_3000 PF13247 4Fe-4S dicluster domain SHALO_3000 PF00037 4Fe-4S binding domain SHALO_3001 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_3001 PF01568 Molydopterin dinucleotide binding domain SHALO_3001 PF00384 Molybdopterin oxidoreductase SHALO_3001 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_3002 PF13847 Methyltransferase domain SHALO_3003 PF00211 Adenylate and Guanylate cyclase catalytic domain SHALO_3004 PF01966 HD domain SHALO_3005 PF03840 Preprotein translocase SecG subunit SHALO_3007 PF01765 Ribosome recycling factor SHALO_3008 PF00156 Phosphoribosyl transferase domain SHALO_3013 PF04011 LemA family SHALO_3017 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_3017 PF00460 Flagella basal body rod protein SHALO_3018 PF07196 Flagellin hook IN motif SHALO_3018 PF07559 Flagellar basal body protein FlaE SHALO_3018 PF00460 Flagella basal body rod protein SHALO_3018 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_3021 PF02511 Thymidylate synthase complementing protein SHALO_3022 PF02075 Crossover junction endodeoxyribonuclease RuvC