SHALO_0001 PF00308 Bacterial dnaA protein SHALO_0001 PF08299 Bacterial dnaA protein helix-turn-helix SHALO_0001 PF11638 DnaA N-terminal domain SHALO_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SHALO_0002 PF02767 DNA polymerase III beta subunit, central domain SHALO_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SHALO_0003 PF00204 DNA gyrase B SHALO_0003 PF00986 DNA gyrase B subunit, carboxyl terminus SHALO_0003 PF01751 Toprim domain SHALO_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0004 PF00563 EAL domain SHALO_0004 PF00990 GGDEF domain SHALO_0005 PF14489 QueF-like protein SHALO_0006 PF13023 HD domain SHALO_0008 PF03167 Uracil DNA glycosylase superfamily SHALO_0009 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_0009 PF14815 NUDIX domain SHALO_0010 PF00005 ABC transporter SHALO_0010 PF00571 CBS domain SHALO_0011 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0012 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SHALO_0013 PF07690 Major Facilitator Superfamily SHALO_0014 PF05681 SHALO_0014 SHALO_0015 PF05683 Fumarase C-terminus SHALO_0016 PF00392 Bacterial regulatory proteins, gntR family SHALO_0016 PF07729 FCD domain SHALO_0017 PF00330 Aconitase family (aconitate hydratase) SHALO_0018 PF00694 Aconitase C-terminal domain SHALO_0020 PF08238 Sel1 repeat SHALO_0022 PF00990 GGDEF domain SHALO_0022 PF02743 Cache domain SHALO_0022 PF08447 PAS fold SHALO_0023 PF00589 Phage integrase family SHALO_0025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0025 PF13682 Chemoreceptor zinc-binding domain SHALO_0027 PF06826 SHALO_0027 SHALO_0028 PF05538 SHALO_0028 SHALO_0029 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0029 PF02743 Cache domain SHALO_0030 PF00072 Response regulator receiver domain SHALO_0030 PF00486 Transcriptional regulatory protein, C terminal SHALO_0031 PF05935 Arylsulfotransferase (ASST) SHALO_0031 PF17425 SHALO_0031 SHALO_0032 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0032 PF02743 Cache domain SHALO_0033 PF02600 Disulfide bond formation protein DsbB SHALO_0034 PF01323 DSBA-like thioredoxin domain SHALO_0036 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_0036 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_0037 PF00857 Isochorismatase family SHALO_0038 PF00440 Bacterial regulatory proteins, tetR family SHALO_0038 PF16925 SHALO_0038 SHALO_0039 PF00583 Acetyltransferase (GNAT) family SHALO_0040 PF06445 GyrI-like small molecule binding domain SHALO_0040 PF12833 Helix-turn-helix domain SHALO_0041 PF13489 Methyltransferase domain SHALO_0043 PF01875 Memo-like protein SHALO_0044 PF04055 Radical SAM superfamily SHALO_0045 PF01871 AMMECR1 SHALO_0047 PF02311 AraC-like ligand binding domain SHALO_0047 PF12833 Helix-turn-helix domain SHALO_0048 PF00892 EamA-like transporter family SHALO_0049 PF05728 Uncharacterised protein family (UPF0227) SHALO_0050 PF01946 Thi4 family SHALO_0052 PF00384 Molybdopterin oxidoreductase SHALO_0052 PF01568 Molydopterin dinucleotide binding domain SHALO_0052 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0053 PF00589 Phage integrase family SHALO_0054 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0055 PF10593 SHALO_0055 SHALO_0056 PF14390 SHALO_0056 SHALO_0057 PF10592 SHALO_0057 SHALO_0059 PF00145 C-5 cytosine-specific DNA methylase SHALO_0060 PF02810 SEC-C motif SHALO_0060 PF13374 Tetratricopeptide repeat SHALO_0060 PF13424 Tetratricopeptide repeat SHALO_0061 PF02661 Fic/DOC family SHALO_0062 PF09565 SHALO_0062 SHALO_0067 PF07022 Bacteriophage CI repressor helix-turn-helix domain SHALO_0068 PF09681 SHALO_0068 SHALO_0074 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SHALO_0076 PF08751 TrwC relaxase SHALO_0076 PF13604 AAA domain SHALO_0077 PF10412 Type IV secretion-system coupling protein DNA-binding domain SHALO_0078 PF13744 Helix-turn-helix domain SHALO_0084 PF00920 Dehydratase family SHALO_0085 PF01914 SHALO_0085 SHALO_0087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0088 PF00483 Nucleotidyl transferase SHALO_0089 PF00117 Glutamine amidotransferase class-I SHALO_0089 PF06418 CTP synthase N-terminus SHALO_0090 PF01368 DHH family SHALO_0090 PF02272 DHHA1 domain SHALO_0091 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) SHALO_0092 PF00795 Carbon-nitrogen hydrolase SHALO_0093 PF00268 Ribonucleotide reductase, small chain SHALO_0094 PF00515 Tetratricopeptide repeat SHALO_0094 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SHALO_0094 PF13424 Tetratricopeptide repeat SHALO_0095 PF04055 Radical SAM superfamily SHALO_0095 PF13353 4Fe-4S single cluster domain SHALO_0096 PF03477 ATP cone domain SHALO_0096 PF13597 Anaerobic ribonucleoside-triphosphate reductase SHALO_0097 PF01177 Asp/Glu/Hydantoin racemase SHALO_0098 PF00317 Ribonucleotide reductase, all-alpha domain SHALO_0098 PF02867 Ribonucleotide reductase, barrel domain SHALO_0098 PF03477 ATP cone domain SHALO_0099 PF00206 Lyase SHALO_0099 PF10397 Adenylosuccinate lyase C-terminus SHALO_0100 PF00849 RNA pseudouridylate synthase SHALO_0101 PF01557 Fumarylacetoacetate (FAA) hydrolase family SHALO_0102 PF04055 Radical SAM superfamily SHALO_0104 PF00977 Histidine biosynthesis protein SHALO_0105 PF00398 Ribosomal RNA adenine dimethylase SHALO_0106 PF00753 Metallo-beta-lactamase superfamily SHALO_0106 PF07521 RNA-metabolising metallo-beta-lactamase SHALO_0107 PF00571 CBS domain SHALO_0107 PF01380 SIS domain SHALO_0108 PF00849 RNA pseudouridylate synthase SHALO_0108 PF01479 S4 domain SHALO_0109 PF05496 Holliday junction DNA helicase ruvB N-terminus SHALO_0109 PF12002 MgsA AAA+ ATPase C terminal SHALO_0109 PF16193 SHALO_0109 SHALO_0111 PF01312 FlhB HrpN YscU SpaS Family SHALO_0112 PF02698 DUF218 domain SHALO_0113 PF00586 AIR synthase related protein, N-terminal domain SHALO_0113 PF02769 AIR synthase related protein, C-terminal domain SHALO_0114 PF01121 Dephospho-CoA kinase SHALO_0115 PF01678 Diaminopimelate epimerase SHALO_0116 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SHALO_0117 PF00472 RF-1 domain SHALO_0117 PF03462 PCRF domain SHALO_0118 PF01649 Ribosomal protein S20 SHALO_0119 PF02254 TrkA-N domain SHALO_0121 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SHALO_0121 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SHALO_0121 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SHALO_0121 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SHALO_0122 PF01252 SHALO_0122 SHALO_0124 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_0124 PF03129 Anticodon binding domain SHALO_0124 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_0125 PF00707 Translation initiation factor IF-3, C-terminal domain SHALO_0125 PF05198 Translation initiation factor IF-3, N-terminal domain SHALO_0126 PF01632 Ribosomal protein L35 SHALO_0127 PF00453 Ribosomal protein L20 SHALO_0128 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SHALO_0128 PF12801 SHALO_0128 SHALO_0128 PF13746 4Fe-4S dicluster domain SHALO_0129 PF00239 Resolvase, N terminal domain SHALO_0130 PF01165 Ribosomal protein S21 SHALO_0133 PF03738 Glutathionylspermidine synthase preATP-grasp SHALO_0134 PF04461 Protein of unknown function (DUF520) SHALO_0136 PF01219 Prokaryotic diacylglycerol kinase SHALO_0137 PF01274 Malate synthase SHALO_0140 PF00034 Cytochrome c SHALO_0142 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0143 PF00072 Response regulator receiver domain SHALO_0143 PF00486 Transcriptional regulatory protein, C terminal SHALO_0145 PF03886 Protein of unknown function (DUF330) SHALO_0146 PF02470 SHALO_0146 SHALO_0147 PF00005 ABC transporter SHALO_0148 PF02405 SHALO_0148 SHALO_0149 PF01625 Peptide methionine sulfoxide reductase SHALO_0150 PF01914 SHALO_0150 SHALO_0151 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0151 PF00672 HAMP domain SHALO_0151 PF08269 Cache domain SHALO_0152 PF07690 Major Facilitator Superfamily SHALO_0153 PF01966 HD domain SHALO_0155 PF13489 Methyltransferase domain SHALO_0156 PF13458 Periplasmic binding protein SHALO_0157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0157 PF12729 SHALO_0157 SHALO_0158 PF00072 Response regulator receiver domain SHALO_0158 PF05732 SHALO_0158 SHALO_0159 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SHALO_0160 PF00543 Nitrogen regulatory protein P-II SHALO_0161 PF00909 Ammonium Transporter Family SHALO_0162 PF00248 Aldo/keto reductase family SHALO_0163 PF01979 Amidohydrolase family SHALO_0164 PF00072 Response regulator receiver domain SHALO_0164 PF00486 Transcriptional regulatory protein, C terminal SHALO_0165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0166 PF07238 PilZ domain SHALO_0167 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0168 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_0169 PF00005 ABC transporter SHALO_0171 PF00034 Cytochrome c SHALO_0172 PF00892 EamA-like transporter family SHALO_0173 PF00950 SHALO_0173 SHALO_0174 PF00005 ABC transporter SHALO_0175 PF01297 Periplasmic solute binding protein family SHALO_0176 PF01475 Ferric uptake regulator family SHALO_0178 PF01261 Xylose isomerase-like TIM barrel SHALO_0179 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SHALO_0180 PF00501 AMP-binding enzyme SHALO_0180 PF13193 AMP-binding enzyme C-terminal domain SHALO_0181 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_0182 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SHALO_0183 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_0184 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_0185 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_0186 PF16514 SHALO_0186 SHALO_0188 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_0188 PF13510 2Fe-2S iron-sulfur cluster binding domain SHALO_0189 PF00146 NADH dehydrogenase SHALO_0190 PF12838 4Fe-4S dicluster domain SHALO_0191 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SHALO_0192 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_0193 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_0193 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_0194 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_0195 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_0197 PF00171 Aldehyde dehydrogenase family SHALO_0198 PF01715 IPP transferase SHALO_0199 PF01040 UbiA prenyltransferase family SHALO_0202 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0202 PF13682 Chemoreceptor zinc-binding domain SHALO_0203 PF08447 PAS fold SHALO_0204 PF04055 Radical SAM superfamily SHALO_0204 PF06463 Molybdenum Cofactor Synthesis C SHALO_0205 PF00994 Probable molybdopterin binding domain SHALO_0205 PF03453 MoeA N-terminal region (domain I and II) SHALO_0207 PF04452 RNA methyltransferase SHALO_0208 PF01197 Ribosomal protein L31 SHALO_0209 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_0210 PF00588 SpoU rRNA Methylase family SHALO_0210 PF08032 RNA 2'-O ribose methyltransferase substrate binding SHALO_0213 PF00155 Aminotransferase class I and II SHALO_0214 PF00742 Homoserine dehydrogenase SHALO_0214 PF01842 ACT domain SHALO_0214 PF03447 Homoserine dehydrogenase, NAD binding domain SHALO_0215 PF02021 Uncharacterised protein family UPF0102 SHALO_0216 PF00085 Thioredoxin SHALO_0217 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_0218 PF01113 Dihydrodipicolinate reductase, N-terminus SHALO_0218 PF05173 Dihydrodipicolinate reductase, C-terminus SHALO_0219 PF00156 Phosphoribosyl transferase domain SHALO_0219 PF13537 Glutamine amidotransferase domain SHALO_0220 PF04055 Radical SAM superfamily SHALO_0220 PF16199 SHALO_0220 SHALO_0221 PF09624 SHALO_0221 SHALO_0222 PF09624 SHALO_0222 SHALO_0223 PF01502 Phosphoribosyl-AMP cyclohydrolase SHALO_0223 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SHALO_0224 PF01145 SPFH domain / Band 7 family SHALO_0225 PF01063 Aminotransferase class IV SHALO_0226 PF00171 Aldehyde dehydrogenase family SHALO_0227 PF00578 AhpC/TSA family SHALO_0228 PF05359 SHALO_0228 SHALO_0229 PF02677 SHALO_0229 SHALO_0230 PF07977 FabA-like domain SHALO_0231 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_0231 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SHALO_0232 PF06689 ClpX C4-type zinc finger SHALO_0232 PF07724 AAA domain (Cdc48 subfamily) SHALO_0232 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_0233 PF06723 MreB/Mbl protein SHALO_0234 PF04085 rod shape-determining protein MreC SHALO_0235 PF02142 MGS-like domain SHALO_0235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_0235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SHALO_0237 PF04365 Protein of unknown function (DUF497) SHALO_0238 PF14384 SHALO_0238 SHALO_0240 PF00899 ThiF family SHALO_0241 PF01975 Survival protein SurE SHALO_0242 PF02684 SHALO_0242 SHALO_0243 PF01272 Transcription elongation factor, GreA/GreB, C-term SHALO_0243 PF03449 Transcription elongation factor, N-terminal SHALO_0244 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_0244 PF02774 Semialdehyde dehydrogenase, dimerisation domain SHALO_0245 PF00149 Calcineurin-like phosphoesterase SHALO_0246 PF00072 Response regulator receiver domain SHALO_0246 PF01584 CheW-like domain SHALO_0247 PF00072 Response regulator receiver domain SHALO_0247 PF01584 CheW-like domain SHALO_0247 PF01627 Hpt domain SHALO_0247 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0247 PF02895 Signal transducing histidine kinase, homodimeric domain SHALO_0248 PF01584 CheW-like domain SHALO_0249 PF02219 Methylenetetrahydrofolate reductase SHALO_0250 PF12710 haloacid dehalogenase-like hydrolase SHALO_0251 PF00923 Transaldolase SHALO_0252 PF00437 Type II/IV secretion system protein SHALO_0253 PF01386 Ribosomal L25p family SHALO_0253 PF14693 Ribosomal protein TL5, C-terminal domain SHALO_0254 PF01195 Peptidyl-tRNA hydrolase SHALO_0255 PF03739 SHALO_0255 SHALO_0256 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SHALO_0256 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SHALO_0257 PF00800 Prephenate dehydratase SHALO_0257 PF01817 Chorismate mutase type II SHALO_0257 PF01842 ACT domain SHALO_0258 PF00155 Aminotransferase class I and II SHALO_0259 PF01514 Secretory protein of YscJ/FliF family SHALO_0259 PF08345 SHALO_0259 SHALO_0260 PF01706 FliG C-terminal domain SHALO_0260 PF14841 FliG middle domain SHALO_0260 PF14842 FliG N-terminal domain SHALO_0262 PF13613 SHALO_0262 SHALO_0263 PF13359 SHALO_0263 SHALO_0264 PF02108 SHALO_0264 SHALO_0265 PF02779 Transketolase, pyrimidine binding domain SHALO_0265 PF02780 Transketolase, C-terminal domain SHALO_0265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SHALO_0266 PF01475 Ferric uptake regulator family SHALO_0267 PF00578 AhpC/TSA family SHALO_0267 PF10417 C-terminal domain of 1-Cys peroxiredoxin SHALO_0268 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0268 PF17201 SHALO_0268 SHALO_0269 PF12838 4Fe-4S dicluster domain SHALO_0270 PF00334 Nucleoside diphosphate kinase SHALO_0272 PF01783 Ribosomal L32p protein family SHALO_0273 PF02504 Fatty acid synthesis protein SHALO_0274 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SHALO_0274 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SHALO_0275 PF02153 Prephenate dehydrogenase SHALO_0276 PF01103 Surface antigen SHALO_0276 PF07244 Surface antigen variable number repeat SHALO_0277 PF02541 Ppx/GppA phosphatase family SHALO_0278 PF00037 4Fe-4S binding domain SHALO_0279 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0280 PF00072 Response regulator receiver domain SHALO_0280 PF00486 Transcriptional regulatory protein, C terminal SHALO_0281 PF02152 Dihydroneopterin aldolase SHALO_0282 PF02660 SHALO_0282 SHALO_0283 PF02445 Quinolinate synthetase A protein SHALO_0284 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SHALO_0284 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SHALO_0285 PF01312 FlhB HrpN YscU SpaS Family SHALO_0286 PF01368 DHH family SHALO_0286 PF02272 DHHA1 domain SHALO_0287 PF01551 Peptidase family M23 SHALO_0288 PF03775 Septum formation inhibitor MinC, C-terminal domain SHALO_0289 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SHALO_0291 PF00288 GHMP kinases N terminal domain SHALO_0292 PF04296 Protein of unknown function (DUF448) SHALO_0293 PF00009 Elongation factor Tu GTP binding domain SHALO_0293 PF04760 Translation initiation factor IF-2, N-terminal region SHALO_0293 PF11987 Translation-initiation factor 2 SHALO_0294 PF02033 Ribosome-binding factor A SHALO_0295 PF02576 Uncharacterised BCR, YhbC family COG0779 SHALO_0295 PF17384 SHALO_0295 SHALO_0296 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SHALO_0297 PF03745 Domain of unknown function (DUF309) SHALO_0298 PF00563 EAL domain SHALO_0298 PF00990 GGDEF domain SHALO_0298 PF05228 SHALO_0298 SHALO_0298 PF08447 PAS fold SHALO_0299 PF00313 'Cold-shock' DNA-binding domain SHALO_0300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0301 PF00072 Response regulator receiver domain SHALO_0301 PF00486 Transcriptional regulatory protein, C terminal SHALO_0302 PF14827 Sensory domain of two-component sensor kinase SHALO_0303 PF00034 Cytochrome c SHALO_0304 PF11756 SHALO_0304 SHALO_0305 PF04055 Radical SAM superfamily SHALO_0305 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SHALO_0305 PF16199 SHALO_0305 SHALO_0307 PF00384 Molybdopterin oxidoreductase SHALO_0307 PF01568 Molydopterin dinucleotide binding domain SHALO_0307 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0308 PF13247 4Fe-4S dicluster domain SHALO_0309 PF03916 SHALO_0309 SHALO_0310 PF00563 EAL domain SHALO_0310 PF00990 GGDEF domain SHALO_0310 PF08495 SHALO_0310 SHALO_0310 PF10442 SHALO_0310 SHALO_0310 PF13426 PAS domain SHALO_0311 PF00384 Molybdopterin oxidoreductase SHALO_0311 PF01568 Molydopterin dinucleotide binding domain SHALO_0311 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0312 PF13247 4Fe-4S dicluster domain SHALO_0313 PF03916 SHALO_0313 SHALO_0314 PF00072 Response regulator receiver domain SHALO_0314 PF00486 Transcriptional regulatory protein, C terminal SHALO_0315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0316 PF14827 Sensory domain of two-component sensor kinase SHALO_0317 PF04055 Radical SAM superfamily SHALO_0317 PF13394 4Fe-4S single cluster domain SHALO_0319 PF01368 DHH family SHALO_0319 PF02833 DHHA2 domain SHALO_0321 PF05818 SHALO_0321 SHALO_0322 PF01209 ubiE/COQ5 methyltransferase family SHALO_0323 PF02601 SHALO_0323 SHALO_0323 PF13742 SHALO_0323 SHALO_0324 PF05082 Rop-like SHALO_0325 PF00990 GGDEF domain SHALO_0326 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_0326 PF00990 GGDEF domain SHALO_0326 PF13185 GAF domain SHALO_0326 PF13426 PAS domain SHALO_0327 PF00962 Adenosine/AMP deaminase SHALO_0328 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_0329 PF06719 SHALO_0329 SHALO_0329 PF12833 Helix-turn-helix domain SHALO_0330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_0331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_0331 PF03466 LysR substrate binding domain SHALO_0332 PF03601 SHALO_0332 SHALO_0333 PF00149 Calcineurin-like phosphoesterase SHALO_0334 PF12850 Calcineurin-like phosphoesterase superfamily domain SHALO_0335 PF00117 Glutamine amidotransferase class-I SHALO_0336 PF00593 TonB dependent receptor SHALO_0336 PF07715 TonB-dependent Receptor Plug Domain SHALO_0337 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_0339 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0340 PF00005 ABC transporter SHALO_0341 PF05940 SHALO_0341 SHALO_0342 PF05573 NosL SHALO_0343 PF12679 SHALO_0343 SHALO_0346 PF00005 ABC transporter SHALO_0347 PF02687 SHALO_0347 SHALO_0349 PF05573 NosL SHALO_0350 PF00005 ABC transporter SHALO_0351 PF12801 SHALO_0351 SHALO_0352 PF00034 Cytochrome c SHALO_0354 PF12838 4Fe-4S dicluster domain SHALO_0355 PF05048 Periplasmic copper-binding protein (NosD) SHALO_0357 PF00034 Cytochrome c SHALO_0357 PF13473 Cupredoxin-like domain SHALO_0358 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0358 PF13426 PAS domain SHALO_0359 PF00072 Response regulator receiver domain SHALO_0359 PF00486 Transcriptional regulatory protein, C terminal SHALO_0360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_0361 PF00355 Rieske [2Fe-2S] domain SHALO_0362 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_0362 PF00033 Cytochrome b(N-terminal)/b6/petB SHALO_0363 PF00034 Cytochrome c SHALO_0364 PF00027 Cyclic nucleotide-binding domain SHALO_0365 PF00589 Phage integrase family SHALO_0367 PF00589 Phage integrase family SHALO_0369 PF01402 Ribbon-helix-helix protein, copG family SHALO_0370 PF05016 Plasmid stabilisation system protein SHALO_0372 PF02588 SHALO_0372 SHALO_0372 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_0373 PF01343 Peptidase family S49 SHALO_0374 PF01979 Amidohydrolase family SHALO_0375 PF01220 Dehydroquinase class II SHALO_0376 PF00557 Metallopeptidase family M24 SHALO_0377 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SHALO_0378 PF00448 SRP54-type protein, GTPase domain SHALO_0379 PF10609 ParA/MinD ATPase like SHALO_0381 PF04542 Sigma-70 region 2 SHALO_0381 PF04545 Sigma-70, region 4 SHALO_0382 PF01052 Surface presentation of antigens (SPOA) SHALO_0382 PF02154 Flagellar motor switch protein FliM SHALO_0383 PF01052 Surface presentation of antigens (SPOA) SHALO_0384 PF03641 Possible lysine decarboxylase SHALO_0386 PF00535 Glycosyl transferase family 2 SHALO_0387 PF08889 SHALO_0387 SHALO_0388 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_0389 PF00893 Small Multidrug Resistance protein SHALO_0390 PF13202 EF hand SHALO_0391 PF14358 SHALO_0391 SHALO_0392 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SHALO_0392 PF14572 Phosphoribosyl synthetase-associated domain SHALO_0393 PF00009 Elongation factor Tu GTP binding domain SHALO_0393 PF00679 Elongation factor G C-terminus SHALO_0393 PF03144 Elongation factor Tu domain 2 SHALO_0393 PF06421 GTP-binding protein LepA C-terminus SHALO_0394 PF00156 Phosphoribosyl transferase domain SHALO_0396 PF01797 Transposase IS200 like SHALO_0397 PF00521 DNA gyrase/topoisomerase IV, subunit A SHALO_0397 PF03989 DNA gyrase C-terminal domain, beta-propeller SHALO_0400 PF00072 Response regulator receiver domain SHALO_0400 PF00158 Sigma-54 interaction domain SHALO_0401 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_0401 PF02774 Semialdehyde dehydrogenase, dimerisation domain SHALO_0402 PF03350 SHALO_0402 SHALO_0403 PF01208 Uroporphyrinogen decarboxylase (URO-D) SHALO_0404 PF04055 Radical SAM superfamily SHALO_0405 PF06808 SHALO_0405 SHALO_0406 PF16868 SHALO_0406 SHALO_0408 PF00589 Phage integrase family SHALO_0408 PF13356 Domain of unknown function (DUF4102) SHALO_0409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0409 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0412 PF02384 N-6 DNA Methylase SHALO_0413 PF12844 Helix-turn-helix domain SHALO_0417 PF00353 Hemolysin-type calcium-binding repeat (2 copies) SHALO_0417 PF06594 SHALO_0417 SHALO_0418 PF00353 Hemolysin-type calcium-binding repeat (2 copies) SHALO_0418 PF06594 SHALO_0418 SHALO_0419 PF02321 Outer membrane efflux protein SHALO_0420 PF00005 ABC transporter SHALO_0420 PF00664 ABC transporter transmembrane region SHALO_0420 PF03412 Peptidase C39 family SHALO_0421 PF13437 HlyD family secretion protein SHALO_0421 PF13533 Biotin-lipoyl like SHALO_0422 PF00239 Resolvase, N terminal domain SHALO_0423 PF01381 Helix-turn-helix SHALO_0424 PF09681 SHALO_0424 SHALO_0428 PF00149 Calcineurin-like phosphoesterase SHALO_0429 PF13476 AAA domain SHALO_0430 PF01844 HNH endonuclease SHALO_0431 PF01909 Nucleotidyltransferase domain SHALO_0432 PF11074 SHALO_0432 SHALO_0433 PF00056 lactate/malate dehydrogenase, NAD binding domain SHALO_0433 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SHALO_0434 PF07661 SHALO_0434 SHALO_0435 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SHALO_0435 PF09363 XFP C-terminal domain SHALO_0435 PF09364 XFP N-terminal domain SHALO_0437 PF02274 Amidinotransferase SHALO_0438 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SHALO_0439 PF01965 DJ-1/PfpI family SHALO_0441 PF05787 Bacterial protein of unknown function (DUF839) SHALO_0442 PF01738 Dienelactone hydrolase family SHALO_0445 PF00563 EAL domain SHALO_0445 PF00990 GGDEF domain SHALO_0448 PF00085 Thioredoxin SHALO_0449 PF14336 Domain of unknown function (DUF4392) SHALO_0450 PF07286 Protein of unknown function (DUF1445) SHALO_0453 PF07366 SnoaL-like polyketide cyclase SHALO_0454 PF00892 EamA-like transporter family SHALO_0455 PF09905 Uncharacterized conserved protein (DUF2132) SHALO_0456 PF00106 short chain dehydrogenase SHALO_0459 PF13458 Periplasmic binding protein SHALO_0460 PF02653 SHALO_0460 SHALO_0461 PF02653 SHALO_0461 SHALO_0462 PF00005 ABC transporter SHALO_0462 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_0463 PF00005 ABC transporter SHALO_0464 PF00171 Aldehyde dehydrogenase family SHALO_0464 PF01619 Proline dehydrogenase SHALO_0466 PF03883 SHALO_0466 SHALO_0471 PF00009 Elongation factor Tu GTP binding domain SHALO_0471 PF03143 Elongation factor Tu C-terminal domain SHALO_0471 PF03144 Elongation factor Tu domain 2 SHALO_0473 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SHALO_0474 PF02357 Transcription termination factor nusG SHALO_0475 PF00298 Ribosomal protein L11, RNA binding domain SHALO_0475 PF03946 Ribosomal protein L11, N-terminal domain SHALO_0476 PF00687 Ribosomal protein L1p/L10e family SHALO_0477 PF00466 Ribosomal protein L10 SHALO_0478 PF00542 Ribosomal protein L7/L12 C-terminal domain SHALO_0478 PF16320 SHALO_0478 SHALO_0479 PF00562 RNA polymerase Rpb2, domain 6 SHALO_0479 PF04560 RNA polymerase Rpb2, domain 7 SHALO_0479 PF04561 RNA polymerase Rpb2, domain 2 SHALO_0479 PF04563 RNA polymerase beta subunit SHALO_0479 PF04565 RNA polymerase Rpb2, domain 3 SHALO_0479 PF10385 RNA polymerase beta subunit external 1 domain SHALO_0480 PF00623 RNA polymerase Rpb1, domain 2 SHALO_0480 PF04983 RNA polymerase Rpb1, domain 3 SHALO_0480 PF04997 RNA polymerase Rpb1, domain 1 SHALO_0480 PF04998 RNA polymerase Rpb1, domain 5 SHALO_0480 PF05000 RNA polymerase Rpb1, domain 4 SHALO_0481 PF00164 Ribosomal protein S12/S23 SHALO_0482 PF00177 Ribosomal protein S7p/S5e SHALO_0483 PF00009 Elongation factor Tu GTP binding domain SHALO_0483 PF00679 Elongation factor G C-terminus SHALO_0483 PF03144 Elongation factor Tu domain 2 SHALO_0483 PF03764 Elongation factor G, domain IV SHALO_0483 PF14492 Elongation Factor G, domain II SHALO_0484 PF00005 ABC transporter SHALO_0484 PF09383 NIL domain SHALO_0485 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0486 PF03180 NLPA lipoprotein SHALO_0488 PF01037 AsnC family SHALO_0488 PF13412 Winged helix-turn-helix DNA-binding SHALO_0489 PF00892 EamA-like transporter family SHALO_0490 PF00248 Aldo/keto reductase family SHALO_0491 PF00881 Nitroreductase family SHALO_0492 PF01554 MatE SHALO_0493 PF00384 Molybdopterin oxidoreductase SHALO_0493 PF01568 Molydopterin dinucleotide binding domain SHALO_0495 PF00072 Response regulator receiver domain SHALO_0495 PF00486 Transcriptional regulatory protein, C terminal SHALO_0496 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_0497 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0498 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0498 PF13682 Chemoreceptor zinc-binding domain SHALO_0499 PF08447 PAS fold SHALO_0501 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_0501 PF13510 2Fe-2S iron-sulfur cluster binding domain SHALO_0502 PF00146 NADH dehydrogenase SHALO_0503 PF12838 4Fe-4S dicluster domain SHALO_0504 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SHALO_0505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_0506 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_0506 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_0507 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_0508 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_0509 PF13643 SHALO_0509 SHALO_0510 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SHALO_0510 PF10531 SLBB domain SHALO_0510 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SHALO_0511 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin SHALO_0512 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_0512 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_0513 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_0514 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SHALO_0515 PF03734 L,D-transpeptidase catalytic domain SHALO_0517 PF00842 Alanine racemase, C-terminal domain SHALO_0517 PF01168 Alanine racemase, N-terminal domain SHALO_0518 PF00990 GGDEF domain SHALO_0520 PF02069 Prokaryotic metallothionein SHALO_0521 PF02527 rRNA small subunit methyltransferase G SHALO_0522 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SHALO_0522 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SHALO_0523 PF01741 Large-conductance mechanosensitive channel, MscL SHALO_0523 PF10571 SHALO_0523 SHALO_0524 PF00583 Acetyltransferase (GNAT) family SHALO_0525 PF00925 GTP cyclohydrolase II SHALO_0526 PF00490 Delta-aminolevulinic acid dehydratase SHALO_0527 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SHALO_0527 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SHALO_0528 PF10788 SHALO_0528 SHALO_0529 PF04055 Radical SAM superfamily SHALO_0529 PF06969 HemN C-terminal domain SHALO_0530 PF02754 SHALO_0530 SHALO_0530 PF13534 4Fe-4S dicluster domain SHALO_0531 PF10543 SHALO_0531 SHALO_0532 PF13289 SHALO_0532 SHALO_0534 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SHALO_0535 PF05016 Plasmid stabilisation system protein SHALO_0536 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_0536 PF00990 GGDEF domain SHALO_0537 PF07690 Major Facilitator Superfamily SHALO_0538 PF02810 SEC-C motif SHALO_0539 PF00027 Cyclic nucleotide-binding domain SHALO_0539 PF13545 Crp-like helix-turn-helix domain SHALO_0540 PF00011 Hsp20/alpha crystallin family SHALO_0541 PF01790 SHALO_0541 SHALO_0542 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SHALO_0543 PF00890 FAD binding domain SHALO_0543 PF02910 Fumarate reductase flavoprotein C-term SHALO_0544 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_0544 PF13183 4Fe-4S dicluster domain SHALO_0545 PF00350 Dynamin family SHALO_0546 PF00350 Dynamin family SHALO_0549 PF01594 SHALO_0549 SHALO_0550 PF05491 Holliday junction DNA helicase ruvB C-terminus SHALO_0550 PF05496 Holliday junction DNA helicase ruvB N-terminus SHALO_0551 PF02548 Ketopantoate hydroxymethyltransferase SHALO_0552 PF01627 Hpt domain SHALO_0553 PF00290 Tryptophan synthase alpha chain SHALO_0554 PF05494 Toluene tolerance, Ttg2 SHALO_0555 PF04333 SHALO_0555 SHALO_0556 PF00318 Ribosomal protein S2 SHALO_0557 PF00889 Elongation factor TS SHALO_0558 PF00005 ABC transporter SHALO_0559 PF01311 SHALO_0559 SHALO_0561 PF00625 Guanylate kinase SHALO_0562 PF02416 mttA/Hcf106 family SHALO_0563 PF00750 tRNA synthetases class I (R) SHALO_0563 PF03485 Arginyl tRNA synthetase N terminal domain SHALO_0563 PF05746 DALR anticodon binding domain SHALO_0564 PF01223 DNA/RNA non-specific endonuclease SHALO_0565 PF00563 EAL domain SHALO_0565 PF00990 GGDEF domain SHALO_0567 PF00593 TonB dependent receptor SHALO_0567 PF07715 TonB-dependent Receptor Plug Domain SHALO_0568 PF01475 Ferric uptake regulator family SHALO_0569 PF00034 Cytochrome c SHALO_0569 PF03150 Di-haem cytochrome c peroxidase SHALO_0570 PF01467 Cytidylyltransferase SHALO_0570 PF02410 Oligomerisation domain SHALO_0571 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SHALO_0571 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SHALO_0572 PF00162 Phosphoglycerate kinase SHALO_0573 PF00121 Triosephosphate isomerase SHALO_0574 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_0575 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_0577 PF08529 NusA N-terminal domain SHALO_0577 PF13184 NusA-like KH domain SHALO_0579 PF00919 Uncharacterized protein family UPF0004 SHALO_0579 PF01938 TRAM domain SHALO_0579 PF04055 Radical SAM superfamily SHALO_0580 PF04028 SHALO_0580 SHALO_0584 PF01171 PP-loop family SHALO_0585 PF00919 Uncharacterized protein family UPF0004 SHALO_0585 PF04055 Radical SAM superfamily SHALO_0586 PF02569 Pantoate-beta-alanine ligase SHALO_0587 PF00472 RF-1 domain SHALO_0587 PF03462 PCRF domain SHALO_0590 PF07264 Etoposide-induced protein 2 SHALO_0591 PF00710 Asparaginase SHALO_0592 PF13177 DNA polymerase III, delta subunit SHALO_0593 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_0593 PF07497 Rho termination factor, RNA-binding domain SHALO_0593 PF07498 Rho termination factor, N-terminal domain SHALO_0594 PF01255 Putative undecaprenyl diphosphate synthase SHALO_0595 PF00563 EAL domain SHALO_0595 PF00990 GGDEF domain SHALO_0595 PF08448 PAS fold SHALO_0595 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_0595 PF13426 PAS domain SHALO_0596 PF03063 Prismane/CO dehydrogenase family SHALO_0597 PF04255 Protein of unknown function (DUF433) SHALO_0600 PF01396 SHALO_0600 SHALO_0600 PF08378 SHALO_0600 SHALO_0601 PF03976 Polyphosphate kinase 2 (PPK2) SHALO_0602 PF13275 S4 domain SHALO_0603 PF00355 Rieske [2Fe-2S] domain SHALO_0604 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_0604 PF00033 Cytochrome b(N-terminal)/b6/petB SHALO_0606 PF03653 SHALO_0606 SHALO_0607 PF00270 DEAD/DEAH box helicase SHALO_0607 PF00271 Helicase conserved C-terminal domain SHALO_0608 PF02447 SHALO_0608 SHALO_0609 PF02624 YcaO-like family SHALO_0610 PF00440 Bacterial regulatory proteins, tetR family SHALO_0610 PF14246 AefR-like transcriptional repressor, C-terminal region SHALO_0611 PF02321 Outer membrane efflux protein SHALO_0612 PF13437 HlyD family secretion protein SHALO_0612 PF13533 Biotin-lipoyl like SHALO_0613 PF07690 Major Facilitator Superfamily SHALO_0614 PF00582 Universal stress protein family SHALO_0616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0616 PF08269 Cache domain SHALO_0617 PF00072 Response regulator receiver domain SHALO_0617 PF00486 Transcriptional regulatory protein, C terminal SHALO_0618 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_0619 PF04290 SHALO_0619 SHALO_0620 PF06808 SHALO_0620 SHALO_0621 PF01909 Nucleotidyltransferase domain SHALO_0622 PF01934 Protein of unknown function DUF86 SHALO_0623 PF03573 outer membrane porin, OprD family SHALO_0624 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SHALO_0625 PF05016 Plasmid stabilisation system protein SHALO_0626 PF10049 SHALO_0626 SHALO_0628 PF05016 Plasmid stabilisation system protein SHALO_0629 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SHALO_0630 PF06769 Plasmid encoded toxin Txe SHALO_0631 PF05538 SHALO_0631 SHALO_0632 PF01909 Nucleotidyltransferase domain SHALO_0634 PF13458 Periplasmic binding protein SHALO_0635 PF02653 SHALO_0635 SHALO_0636 PF02653 SHALO_0636 SHALO_0637 PF00005 ABC transporter SHALO_0637 PF12399 Branched-chain amino acid ATP-binding cassette transporter SHALO_0638 PF00005 ABC transporter SHALO_0639 PF01578 SHALO_0639 SHALO_0639 PF05140 SHALO_0639 SHALO_0647 PF02464 Competence-damaged protein SHALO_0648 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_0648 PF08264 Anticodon-binding domain of tRNA SHALO_0650 PF01425 Amidase SHALO_0651 PF00478 IMP dehydrogenase / GMP reductase domain SHALO_0651 PF00571 CBS domain SHALO_0652 PF00561 alpha/beta hydrolase fold SHALO_0653 PF02609 Exonuclease VII small subunit SHALO_0654 PF00795 Carbon-nitrogen hydrolase SHALO_0655 PF00899 ThiF family SHALO_0656 PF00155 Aminotransferase class I and II SHALO_0657 PF01225 Mur ligase family, catalytic domain SHALO_0657 PF02875 Mur ligase family, glutamate ligase domain SHALO_0657 PF08245 Mur ligase middle domain SHALO_0659 PF00488 MutS domain V SHALO_0659 PF01713 Smr domain SHALO_0660 PF01546 Peptidase family M20/M25/M40 SHALO_0660 PF07687 Peptidase dimerisation domain SHALO_0661 PF01042 Endoribonuclease L-PSP SHALO_0662 PF06039 SHALO_0662 SHALO_0663 PF13649 Methyltransferase domain SHALO_0665 PF00583 Acetyltransferase (GNAT) family SHALO_0666 PF00595 PDZ domain (Also known as DHR or GLGF) SHALO_0666 PF03572 Peptidase family S41 SHALO_0667 PF13690 Chemotaxis phosphatase CheX SHALO_0668 PF00224 Pyruvate kinase, barrel domain SHALO_0668 PF02887 Pyruvate kinase, alpha/beta domain SHALO_0669 PF00829 Ribosomal prokaryotic L21 protein SHALO_0670 PF01016 Ribosomal L27 protein SHALO_0671 PF01018 GTP1/OBG SHALO_0671 PF01926 50S ribosome-binding GTPase SHALO_0672 PF00696 Amino acid kinase family SHALO_0673 PF00551 Formyl transferase SHALO_0673 PF02911 Formyl transferase, C-terminal domain SHALO_0674 PF03099 Biotin/lipoate A/B protein ligase family SHALO_0675 PF13614 AAA domain SHALO_0676 PF02195 ParB-like nuclease domain SHALO_0677 PF00430 ATP synthase B/B' CF(0) SHALO_0678 PF00430 ATP synthase B/B' CF(0) SHALO_0679 PF00213 ATP synthase delta (OSCP) subunit SHALO_0680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_0680 PF00306 ATP synthase alpha/beta chain, C terminal domain SHALO_0680 PF02874 ATP synthase alpha/beta family, beta-barrel domain SHALO_0681 PF00231 ATP synthase SHALO_0682 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_0682 PF02874 ATP synthase alpha/beta family, beta-barrel domain SHALO_0683 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SHALO_0684 PF01618 SHALO_0684 SHALO_0685 PF02472 Biopolymer transport protein ExbD/TolR SHALO_0686 PF13103 TonB C terminal SHALO_0687 PF07676 WD40-like Beta Propeller Repeat SHALO_0688 PF00691 OmpA family SHALO_0689 PF13174 Tetratricopeptide repeat SHALO_0689 PF13432 Tetratricopeptide repeat SHALO_0690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_0692 PF00698 Acyl transferase domain SHALO_0693 PF01048 Phosphorylase superfamily SHALO_0694 PF01171 PP-loop family SHALO_0695 PF13114 SHALO_0695 SHALO_0696 PF00310 Glutamine amidotransferases class-II SHALO_0696 PF01493 GXGXG motif SHALO_0696 PF01645 Conserved region in glutamate synthase SHALO_0696 PF04898 Glutamate synthase central domain SHALO_0697 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_0697 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_0698 PF00459 Inositol monophosphatase family SHALO_0699 PF01039 Carboxyl transferase domain SHALO_0700 PF02590 Predicted SPOUT methyltransferase SHALO_0701 PF01258 Prokaryotic dksA/traR C4-type zinc finger SHALO_0703 PF01207 Dihydrouridine synthase (Dus) SHALO_0705 PF03547 SHALO_0705 SHALO_0707 PF01052 Surface presentation of antigens (SPOA) SHALO_0708 PF03960 ArsC family SHALO_0710 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_0711 PF03547 SHALO_0711 SHALO_0712 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_0713 PF04229 GrpB protein SHALO_0714 PF00583 Acetyltransferase (GNAT) family SHALO_0716 PF01964 ThiC family SHALO_0716 PF13667 ThiC-associated domain SHALO_0718 PF13690 Chemotaxis phosphatase CheX SHALO_0719 PF00324 Amino acid permease SHALO_0720 PF01925 SHALO_0720 SHALO_0721 PF00005 ABC transporter SHALO_0722 PF00375 Sodium:dicarboxylate symporter family SHALO_0723 PF00375 Sodium:dicarboxylate symporter family SHALO_0724 PF08668 HDOD domain SHALO_0725 PF00476 DNA polymerase family A SHALO_0725 PF01367 5'-3' exonuclease, C-terminal SAM fold SHALO_0725 PF01612 3'-5' exonuclease SHALO_0725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SHALO_0726 PF02659 SHALO_0726 SHALO_0727 PF01863 Protein of unknown function DUF45 SHALO_0728 PF00226 DnaJ domain SHALO_0728 PF00684 DnaJ central domain SHALO_0728 PF01556 DnaJ C terminal domain SHALO_0729 PF07813 LTXXQ motif family protein SHALO_0730 PF03595 Voltage-dependent anion channel SHALO_0732 PF14899 SHALO_0732 SHALO_0733 PF01654 SHALO_0733 SHALO_0734 PF02322 SHALO_0734 SHALO_0735 PF00072 Response regulator receiver domain SHALO_0735 PF00486 Transcriptional regulatory protein, C terminal SHALO_0736 PF00672 HAMP domain SHALO_0736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0737 PF02132 RecR protein SHALO_0737 PF13662 Toprim domain SHALO_0738 PF00989 PAS fold SHALO_0738 PF00990 GGDEF domain SHALO_0738 PF13426 PAS domain SHALO_0739 PF13453 SHALO_0739 SHALO_0740 PF00501 AMP-binding enzyme SHALO_0740 PF13193 AMP-binding enzyme C-terminal domain SHALO_0741 PF08501 Shikimate dehydrogenase substrate binding domain SHALO_0742 PF00425 chorismate binding enzyme SHALO_0742 PF04715 Anthranilate synthase component I, N terminal region SHALO_0743 PF05036 Sporulation related domain SHALO_0744 PF08966 Domain of unknown function (DUF1882) SHALO_0745 PF00464 Serine hydroxymethyltransferase SHALO_0746 PF00152 tRNA synthetases class II (D, K and N) SHALO_0746 PF01336 OB-fold nucleic acid binding domain SHALO_0747 PF01475 Ferric uptake regulator family SHALO_0748 PF02674 SHALO_0748 SHALO_0749 PF00990 GGDEF domain SHALO_0750 PF00437 Type II/IV secretion system protein SHALO_0751 PF02686 Glu-tRNAGln amidotransferase C subunit SHALO_0753 PF13360 PQQ-like domain SHALO_0755 PF03309 Type III pantothenate kinase SHALO_0756 PF01634 ATP phosphoribosyltransferase SHALO_0757 PF00072 Response regulator receiver domain SHALO_0758 PF00072 Response regulator receiver domain SHALO_0758 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0758 PF08376 Nitrate and nitrite sensing SHALO_0761 PF01541 GIY-YIG catalytic domain SHALO_0761 PF02151 UvrB/uvrC motif SHALO_0761 PF08459 UvrC Helix-hairpin-helix N-terminal SHALO_0764 PF00890 FAD binding domain SHALO_0765 PF03600 Citrate transporter SHALO_0766 PF00117 Glutamine amidotransferase class-I SHALO_0766 PF00958 GMP synthase C terminal domain SHALO_0766 PF02540 NAD synthase SHALO_0767 PF02602 Uroporphyrinogen-III synthase HemD SHALO_0768 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SHALO_0768 PF02843 Phosphoribosylglycinamide synthetase, C domain SHALO_0768 PF02844 Phosphoribosylglycinamide synthetase, N domain SHALO_0769 PF06271 SHALO_0769 SHALO_0770 PF04453 Organic solvent tolerance protein SHALO_0771 PF00013 KH domain SHALO_0771 PF00575 S1 RNA binding domain SHALO_0771 PF01138 3' exoribonuclease family, domain 1 SHALO_0771 PF03725 3' exoribonuclease family, domain 2 SHALO_0771 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SHALO_0772 PF00137 ATP synthase subunit C SHALO_0775 PF00589 Phage integrase family SHALO_0775 PF14659 Phage integrase, N-terminal SAM-like domain SHALO_0776 PF00145 C-5 cytosine-specific DNA methylase SHALO_0777 PF05840 SHALO_0777 SHALO_0778 PF00263 SHALO_0778 SHALO_0779 PF05707 Zonular occludens toxin (Zot) SHALO_0787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0787 PF04392 ABC transporter substrate binding protein SHALO_0787 PF08448 PAS fold SHALO_0788 PF00072 Response regulator receiver domain SHALO_0788 PF00486 Transcriptional regulatory protein, C terminal SHALO_0789 PF04290 SHALO_0789 SHALO_0790 PF06808 SHALO_0790 SHALO_0791 PF01565 FAD binding domain SHALO_0791 PF02754 SHALO_0791 SHALO_0791 PF02913 FAD linked oxidases, C-terminal domain SHALO_0791 PF13183 4Fe-4S dicluster domain SHALO_0792 PF04277 SHALO_0792 SHALO_0793 PF00364 Biotin-requiring enzyme SHALO_0793 PF00682 HMGL-like SHALO_0793 PF02436 Conserved carboxylase domain SHALO_0794 PF03977 SHALO_0794 SHALO_0795 PF01293 Phosphoenolpyruvate carboxykinase SHALO_0796 PF00206 Lyase SHALO_0796 PF14698 Argininosuccinate lyase C-terminal SHALO_0797 PF01230 HIT domain SHALO_0798 PF01409 tRNA synthetases class II core domain (F) SHALO_0798 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SHALO_0799 PF01588 Putative tRNA binding domain SHALO_0799 PF03147 Ferredoxin-fold anticodon binding domain SHALO_0799 PF03484 tRNA synthetase B5 domain SHALO_0800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SHALO_0801 PF02401 LytB protein SHALO_0802 PF00575 S1 RNA binding domain SHALO_0804 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_0804 PF01842 ACT domain SHALO_0804 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_0805 PF02321 Outer membrane efflux protein SHALO_0806 PF16576 SHALO_0806 SHALO_0807 PF00873 AcrB/AcrD/AcrF family SHALO_0808 PF00873 AcrB/AcrD/AcrF family SHALO_0811 PF01132 Elongation factor P (EF-P) OB domain SHALO_0811 PF08207 Elongation factor P (EF-P) KOW-like domain SHALO_0811 PF09285 Elongation factor P, C-terminal SHALO_0812 PF01965 DJ-1/PfpI family SHALO_0813 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0814 PF00488 MutS domain V SHALO_0814 PF01624 MutS domain I SHALO_0814 PF05192 MutS domain III SHALO_0815 PF11026 SHALO_0815 SHALO_0816 PF13509 S1 domain SHALO_0817 PF03486 HI0933-like protein SHALO_0819 PF03797 Autotransporter beta-domain SHALO_0820 PF00990 GGDEF domain SHALO_0820 PF02743 Cache domain SHALO_0821 PF03653 SHALO_0821 SHALO_0823 PF01934 Protein of unknown function DUF86 SHALO_0824 PF01909 Nucleotidyltransferase domain SHALO_0825 PF00563 EAL domain SHALO_0825 PF00990 GGDEF domain SHALO_0826 PF07859 alpha/beta hydrolase fold SHALO_0827 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SHALO_0828 PF02321 Outer membrane efflux protein SHALO_0829 PF00873 AcrB/AcrD/AcrF family SHALO_0830 PF16576 SHALO_0830 SHALO_0831 PF08447 PAS fold SHALO_0832 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0832 PF08269 Cache domain SHALO_0834 PF02811 PHP domain SHALO_0834 PF07733 Bacterial DNA polymerase III alpha subunit SHALO_0834 PF14579 Helix-hairpin-helix motif SHALO_0836 PF00512 His Kinase A (phospho-acceptor) domain SHALO_0836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0837 PF00266 Aminotransferase class-V SHALO_0838 PF02386 Cation transport protein SHALO_0839 PF02254 TrkA-N domain SHALO_0842 PF01098 SHALO_0842 SHALO_0843 PF00849 RNA pseudouridylate synthase SHALO_0843 PF01479 S4 domain SHALO_0845 PF02390 Putative methyltransferase SHALO_0846 PF00005 ABC transporter SHALO_0848 PF01551 Peptidase family M23 SHALO_0849 PF00696 Amino acid kinase family SHALO_0850 PF01192 RNA polymerase Rpb6 SHALO_0851 PF02824 TGS domain SHALO_0851 PF04607 Region found in RelA / SpoT proteins SHALO_0851 PF13328 HD domain SHALO_0852 PF00579 tRNA synthetases class I (W and Y) SHALO_0852 PF01479 S4 domain SHALO_0853 PF03060 Nitronate monooxygenase SHALO_0854 PF01520 N-acetylmuramoyl-L-alanine amidase SHALO_0855 PF00994 Probable molybdopterin binding domain SHALO_0856 PF00406 Adenylate kinase SHALO_0857 PF00152 tRNA synthetases class II (D, K and N) SHALO_0857 PF01336 OB-fold nucleic acid binding domain SHALO_0857 PF02938 GAD domain SHALO_0858 PF00990 GGDEF domain SHALO_0859 PF03923 SHALO_0859 SHALO_0860 PF01513 ATP-NAD kinase SHALO_0861 PF02463 RecF/RecN/SMC N terminal domain SHALO_0862 PF02652 SHALO_0862 SHALO_0863 PF00072 Response regulator receiver domain SHALO_0863 PF00990 GGDEF domain SHALO_0864 PF01026 TatD related DNase SHALO_0865 PF01464 Transglycosylase SLT domain SHALO_0865 PF01476 LysM domain SHALO_0866 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel SHALO_0866 PF05036 Sporulation related domain SHALO_0867 PF00475 Imidazoleglycerol-phosphate dehydratase SHALO_0868 PF08282 haloacid dehalogenase-like hydrolase SHALO_0870 PF03968 OstA-like protein SHALO_0871 PF01926 50S ribosome-binding GTPase SHALO_0872 PF00583 Acetyltransferase (GNAT) family SHALO_0874 PF00905 Penicillin binding protein transpeptidase domain SHALO_0874 PF03717 Penicillin-binding Protein dimerisation domain SHALO_0875 PF01965 DJ-1/PfpI family SHALO_0876 PF02130 Uncharacterized protein family UPF0054 SHALO_0878 PF01406 tRNA synthetases class I (C) catalytic domain SHALO_0878 PF01588 Putative tRNA binding domain SHALO_0878 PF09334 tRNA synthetases class I (M) SHALO_0880 PF00316 Fructose-1-6-bisphosphatase SHALO_0881 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SHALO_0883 PF01464 Transglycosylase SLT domain SHALO_0884 PF02325 SHALO_0884 SHALO_0885 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_0886 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_0886 PF02637 GatB domain SHALO_0886 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SHALO_0888 PF05538 SHALO_0888 SHALO_0889 PF00072 Response regulator receiver domain SHALO_0889 PF00486 Transcriptional regulatory protein, C terminal SHALO_0890 PF00939 Sodium:sulfate symporter transmembrane region SHALO_0891 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_0891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0892 PF02743 Cache domain SHALO_0894 PF00072 Response regulator receiver domain SHALO_0894 PF00486 Transcriptional regulatory protein, C terminal SHALO_0895 PF07568 SHALO_0895 SHALO_0897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_0897 PF03466 LysR substrate binding domain SHALO_0898 PF00890 FAD binding domain SHALO_0898 PF02910 Fumarate reductase flavoprotein C-term SHALO_0899 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_0899 PF13183 4Fe-4S dicluster domain SHALO_0900 PF02754 SHALO_0900 SHALO_0901 PF13531 Bacterial extracellular solute-binding protein SHALO_0902 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0902 PF12729 SHALO_0902 SHALO_0903 PF01925 SHALO_0903 SHALO_0904 PF00027 Cyclic nucleotide-binding domain SHALO_0904 PF13545 Crp-like helix-turn-helix domain SHALO_0905 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_0906 PF02335 Cytochrome c552 SHALO_0907 PF01578 SHALO_0907 SHALO_0907 PF05140 SHALO_0907 SHALO_0909 PF00027 Cyclic nucleotide-binding domain SHALO_0909 PF13545 Crp-like helix-turn-helix domain SHALO_0910 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SHALO_0911 PF06821 Serine hydrolase SHALO_0912 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0913 PF00072 Response regulator receiver domain SHALO_0913 PF00486 Transcriptional regulatory protein, C terminal SHALO_0915 PF00890 FAD binding domain SHALO_0916 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_0917 PF00239 Resolvase, N terminal domain SHALO_0917 PF02796 Helix-turn-helix domain of resolvase SHALO_0918 PF04172 SHALO_0918 SHALO_0919 PF03788 SHALO_0919 SHALO_0920 PF00515 Tetratricopeptide repeat SHALO_0920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SHALO_0920 PF13181 Tetratricopeptide repeat SHALO_0920 PF13414 TPR repeat SHALO_0920 PF13432 Tetratricopeptide repeat SHALO_0921 PF00535 Glycosyl transferase family 2 SHALO_0921 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) SHALO_0922 PF01636 Phosphotransferase enzyme family SHALO_0923 PF00581 Rhodanese-like domain SHALO_0924 PF09335 SHALO_0924 SHALO_0925 PF02754 SHALO_0925 SHALO_0925 PF13534 4Fe-4S dicluster domain SHALO_0926 PF09335 SHALO_0926 SHALO_0927 PF04055 Radical SAM superfamily SHALO_0927 PF13394 4Fe-4S single cluster domain SHALO_0927 PF13847 Methyltransferase domain SHALO_0928 PF00892 EamA-like transporter family SHALO_0929 PF12838 4Fe-4S dicluster domain SHALO_0930 PF06719 SHALO_0930 SHALO_0930 PF12833 Helix-turn-helix domain SHALO_0931 PF05368 NmrA-like family SHALO_0933 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_0933 PF12833 Helix-turn-helix domain SHALO_0934 PF00892 EamA-like transporter family SHALO_0935 PF00583 Acetyltransferase (GNAT) family SHALO_0935 PF12802 MarR family SHALO_0936 PF00583 Acetyltransferase (GNAT) family SHALO_0937 PF01411 tRNA synthetases class II (A) SHALO_0937 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_0939 PF05175 Methyltransferase small domain SHALO_0940 PF01040 UbiA prenyltransferase family SHALO_0941 PF00034 Cytochrome c SHALO_0941 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SHALO_0941 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SHALO_0942 PF03626 SHALO_0942 SHALO_0943 PF00510 Cytochrome c oxidase subunit III SHALO_0944 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_0946 PF03573 outer membrane porin, OprD family SHALO_0949 PF00384 Molybdopterin oxidoreductase SHALO_0949 PF01568 Molydopterin dinucleotide binding domain SHALO_0949 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0949 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_0950 PF12838 4Fe-4S dicluster domain SHALO_0951 PF12801 SHALO_0951 SHALO_0951 PF13237 4Fe-4S dicluster domain SHALO_0952 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SHALO_0953 PF00037 4Fe-4S binding domain SHALO_0955 PF03927 NapD protein SHALO_0956 PF08447 PAS fold SHALO_0957 PF01926 50S ribosome-binding GTPase SHALO_0957 PF06071 Protein of unknown function (DUF933) SHALO_0959 PF03929 SHALO_0959 SHALO_0961 PF00593 TonB dependent receptor SHALO_0961 PF07715 TonB-dependent Receptor Plug Domain SHALO_0962 PF04773 FecR protein SHALO_0962 PF16344 SHALO_0962 SHALO_0963 PF04542 Sigma-70 region 2 SHALO_0963 PF08281 Sigma-70, region 4 SHALO_0964 PF00581 Rhodanese-like domain SHALO_0964 PF02943 Ferredoxin thioredoxin reductase catalytic beta chain SHALO_0965 PF02613 Nitrate reductase delta subunit SHALO_0966 PF00384 Molybdopterin oxidoreductase SHALO_0966 PF01568 Molydopterin dinucleotide binding domain SHALO_0966 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0967 PF13247 4Fe-4S dicluster domain SHALO_0969 PF00072 Response regulator receiver domain SHALO_0969 PF00486 Transcriptional regulatory protein, C terminal SHALO_0970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_0971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_0972 PF00034 Cytochrome c SHALO_0973 PF00355 Rieske [2Fe-2S] domain SHALO_0974 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_0974 PF00033 Cytochrome b(N-terminal)/b6/petB SHALO_0975 PF00034 Cytochrome c SHALO_0976 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0977 PF03573 outer membrane porin, OprD family SHALO_0978 PF00072 Response regulator receiver domain SHALO_0978 PF00563 EAL domain SHALO_0978 PF08447 PAS fold SHALO_0979 PF02666 SHALO_0979 SHALO_0980 PF00270 DEAD/DEAH box helicase SHALO_0980 PF00271 Helicase conserved C-terminal domain SHALO_0980 PF03880 DbpA RNA binding domain SHALO_0981 PF12746 GNAT acetyltransferase SHALO_0982 PF08348 SHALO_0982 SHALO_0982 PF13309 SHALO_0982 SHALO_0983 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SHALO_0983 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SHALO_0984 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0985 PF00682 HMGL-like SHALO_0986 PF08241 Methyltransferase domain SHALO_0987 PF01810 SHALO_0987 SHALO_0988 PF00072 Response regulator receiver domain SHALO_0988 PF01966 HD domain SHALO_0988 PF08447 PAS fold SHALO_0989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_0989 PF12729 SHALO_0989 SHALO_0990 PF12844 Helix-turn-helix domain SHALO_0991 PF06629 SHALO_0991 SHALO_0992 PF07730 Histidine kinase SHALO_0992 PF13581 Histidine kinase-like ATPase domain SHALO_0993 PF00072 Response regulator receiver domain SHALO_0993 PF00196 Bacterial regulatory proteins, luxR family SHALO_0994 PF00753 Metallo-beta-lactamase superfamily SHALO_0994 PF14863 Alkyl sulfatase dimerisation SHALO_0995 PF02525 Flavodoxin-like fold SHALO_0996 PF01047 MarR family SHALO_0997 PF01709 Transcriptional regulator SHALO_0998 PF02589 Uncharacterised ACR, YkgG family COG1556 SHALO_0999 PF16868 SHALO_0999 SHALO_1000 PF06808 SHALO_1000 SHALO_1001 PF08905 SHALO_1001 SHALO_1002 PF02588 SHALO_1002 SHALO_1002 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_1004 PF00118 TCP-1/cpn60 chaperonin family SHALO_1005 PF00166 Chaperonin 10 Kd subunit SHALO_1007 PF00589 Phage integrase family SHALO_1009 PF14297 SHALO_1009 SHALO_1016 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1017 PF00082 Subtilase family SHALO_1019 PF00589 Phage integrase family SHALO_1025 PF04471 Restriction endonuclease SHALO_1029 PF02661 Fic/DOC family SHALO_1030 PF01381 Helix-turn-helix SHALO_1032 PF05981 SHALO_1032 SHALO_1033 PF00563 EAL domain SHALO_1033 PF00990 GGDEF domain SHALO_1034 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1035 PF00072 Response regulator receiver domain SHALO_1035 PF00486 Transcriptional regulatory protein, C terminal SHALO_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1036 PF07695 SHALO_1036 SHALO_1036 PF07696 7TMR-DISM extracellular 2 SHALO_1037 PF02321 Outer membrane efflux protein SHALO_1038 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP SHALO_1039 PF00563 EAL domain SHALO_1039 PF00990 GGDEF domain SHALO_1039 PF16448 SHALO_1039 SHALO_1040 PF00005 ABC transporter SHALO_1040 PF00664 ABC transporter transmembrane region SHALO_1041 PF13437 HlyD family secretion protein SHALO_1041 PF13533 Biotin-lipoyl like SHALO_1042 PF00196 Bacterial regulatory proteins, luxR family SHALO_1043 PF00353 Hemolysin-type calcium-binding repeat (2 copies) SHALO_1044 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP SHALO_1045 PF01841 Transglutaminase-like superfamily SHALO_1045 PF08379 SHALO_1045 SHALO_1045 PF09899 SHALO_1045 SHALO_1046 PF04168 SHALO_1046 SHALO_1046 PF14403 SHALO_1046 SHALO_1047 PF01841 Transglutaminase-like superfamily SHALO_1047 PF08379 SHALO_1047 SHALO_1048 PF05015 Plasmid maintenance system killer protein SHALO_1049 PF01381 Helix-turn-helix SHALO_1051 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SHALO_1052 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SHALO_1053 PF01841 Transglutaminase-like superfamily SHALO_1053 PF08379 SHALO_1053 SHALO_1054 PF04168 SHALO_1054 SHALO_1055 PF14403 SHALO_1055 SHALO_1058 PF06738 SHALO_1058 SHALO_1059 PF12821 SHALO_1059 SHALO_1060 PF01814 Hemerythrin HHE cation binding domain SHALO_1061 PF00122 E1-E2 ATPase SHALO_1061 PF00702 haloacid dehalogenase-like hydrolase SHALO_1062 PF01022 Bacterial regulatory protein, arsR family SHALO_1064 PF13250 SHALO_1064 SHALO_1064 PF13455 SHALO_1064 SHALO_1065 PF00464 Serine hydroxymethyltransferase SHALO_1066 PF00583 Acetyltransferase (GNAT) family SHALO_1066 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_1066 PF12833 Helix-turn-helix domain SHALO_1067 PF12833 Helix-turn-helix domain SHALO_1068 PF02627 Carboxymuconolactone decarboxylase family SHALO_1069 PF06739 SHALO_1069 SHALO_1070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1071 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1071 PF02743 Cache domain SHALO_1072 PF02581 Thiamine monophosphate synthase/TENI SHALO_1073 PF01757 SHALO_1073 SHALO_1074 PF02915 Rubrerythrin SHALO_1075 PF03006 SHALO_1075 SHALO_1077 PF01810 SHALO_1077 SHALO_1078 PF02754 SHALO_1078 SHALO_1079 PF02589 Uncharacterised ACR, YkgG family COG1556 SHALO_1079 PF13183 4Fe-4S dicluster domain SHALO_1080 PF02589 Uncharacterised ACR, YkgG family COG1556 SHALO_1081 PF00892 EamA-like transporter family SHALO_1082 PF13472 GDSL-like Lipase/Acylhydrolase family SHALO_1084 PF00027 Cyclic nucleotide-binding domain SHALO_1084 PF00571 CBS domain SHALO_1084 PF03445 SHALO_1084 SHALO_1084 PF10335 SHALO_1084 SHALO_1085 PF00929 Exonuclease SHALO_1087 PF01717 Cobalamin-independent synthase, Catalytic domain SHALO_1087 PF08267 Cobalamin-independent synthase, N-terminal domain SHALO_1089 PF01435 Peptidase family M48 SHALO_1090 PF07883 Cupin domain SHALO_1091 PF06821 Serine hydrolase SHALO_1092 PF00857 Isochorismatase family SHALO_1093 PF01739 CheR methyltransferase, SAM binding domain SHALO_1094 PF01339 CheB methylesterase SHALO_1095 PF00883 Cytosol aminopeptidase family, catalytic domain SHALO_1095 PF02789 Cytosol aminopeptidase family, N-terminal domain SHALO_1096 PF09335 SHALO_1096 SHALO_1097 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1098 PF00156 Phosphoribosyl transferase domain SHALO_1100 PF02502 Ribose/Galactose Isomerase SHALO_1101 PF02163 Peptidase family M50 SHALO_1102 PF00717 Peptidase S24-like SHALO_1103 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHALO_1103 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SHALO_1105 PF00202 Aminotransferase class-III SHALO_1106 PF09527 SHALO_1106 SHALO_1108 PF04055 Radical SAM superfamily SHALO_1109 PF00675 Insulinase (Peptidase family M16) SHALO_1109 PF05193 Peptidase M16 inactive domain SHALO_1110 PF00270 DEAD/DEAH box helicase SHALO_1110 PF00271 Helicase conserved C-terminal domain SHALO_1111 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SHALO_1111 PF16321 SHALO_1111 SHALO_1113 PF07963 Prokaryotic N-terminal methylation motif SHALO_1115 PF03160 Calx-beta domain SHALO_1116 PF02623 FliW protein SHALO_1117 PF13525 Outer membrane lipoprotein SHALO_1118 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1118 PF02190 ATP-dependent protease La (LON) domain SHALO_1118 PF05362 Lon protease (S16) C-terminal proteolytic domain SHALO_1119 PF01084 Ribosomal protein S18 SHALO_1120 PF00436 Single-strand binding protein family SHALO_1121 PF01250 Ribosomal protein S6 SHALO_1122 PF06144 DNA polymerase III, delta subunit SHALO_1123 PF00773 RNB domain SHALO_1124 PF08668 HDOD domain SHALO_1125 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SHALO_1125 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain SHALO_1126 PF13614 AAA domain SHALO_1127 PF03776 Septum formation topological specificity factor MinE SHALO_1128 PF04748 Divergent polysaccharide deacetylase SHALO_1129 PF02481 DNA recombination-mediator protein A SHALO_1130 PF01925 SHALO_1130 SHALO_1131 PF04073 Aminoacyl-tRNA editing domain SHALO_1134 PF03313 SHALO_1134 SHALO_1134 PF03315 Serine dehydratase beta chain SHALO_1135 PF03652 Uncharacterised protein family (UPF0081) SHALO_1136 PF03458 SHALO_1136 SHALO_1137 PF00202 Aminotransferase class-III SHALO_1138 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase SHALO_1139 PF02597 ThiS family SHALO_1140 PF01648 4'-phosphopantetheinyl transferase superfamily SHALO_1141 PF03748 SHALO_1141 SHALO_1142 PF13481 AAA domain SHALO_1142 PF13541 Subunit ChlI of Mg-chelatase SHALO_1143 PF00448 SRP54-type protein, GTPase domain SHALO_1144 PF13905 Thioredoxin-like SHALO_1145 PF01812 5-formyltetrahydrofolate cyclo-ligase family SHALO_1146 PF00013 KH domain SHALO_1146 PF01966 HD domain SHALO_1146 PF12072 SHALO_1146 SHALO_1147 PF00005 ABC transporter SHALO_1147 PF00664 ABC transporter transmembrane region SHALO_1148 PF04366 SHALO_1148 SHALO_1149 PF09335 SHALO_1149 SHALO_1150 PF00717 Peptidase S24-like SHALO_1151 PF01758 Sodium Bile acid symporter family SHALO_1152 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SHALO_1154 PF00072 Response regulator receiver domain SHALO_1154 PF00989 PAS fold SHALO_1155 PF00072 Response regulator receiver domain SHALO_1155 PF00486 Transcriptional regulatory protein, C terminal SHALO_1156 PF00072 Response regulator receiver domain SHALO_1156 PF00563 EAL domain SHALO_1156 PF00990 GGDEF domain SHALO_1157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1157 PF02743 Cache domain SHALO_1158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1159 PF08495 SHALO_1159 SHALO_1159 PF10442 SHALO_1159 SHALO_1160 PF04073 Aminoacyl-tRNA editing domain SHALO_1165 PF12833 Helix-turn-helix domain SHALO_1166 PF01850 PIN domain SHALO_1167 PF00145 C-5 cytosine-specific DNA methylase SHALO_1168 PF00589 Phage integrase family SHALO_1168 PF14659 Phage integrase, N-terminal SAM-like domain SHALO_1171 PF00925 GTP cyclohydrolase II SHALO_1171 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_1172 PF00999 Sodium/hydrogen exchanger family SHALO_1172 PF02254 TrkA-N domain SHALO_1173 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1174 PF00149 Calcineurin-like phosphoesterase SHALO_1175 PF04264 YceI-like domain SHALO_1177 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_1178 PF00005 ABC transporter SHALO_1179 PF02687 SHALO_1179 SHALO_1179 PF12704 MacB-like periplasmic core domain SHALO_1180 PF00929 Exonuclease SHALO_1181 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1182 PF00872 SHALO_1182 SHALO_1183 PF07804 HipA-like C-terminal domain SHALO_1183 PF13657 HipA N-terminal domain SHALO_1184 PF12844 Helix-turn-helix domain SHALO_1186 PF13899 Thioredoxin-like SHALO_1187 PF01327 Polypeptide deformylase SHALO_1188 PF03061 Thioesterase superfamily SHALO_1190 PF03167 Uracil DNA glycosylase superfamily SHALO_1191 PF13855 Leucine rich repeat SHALO_1193 PF00682 HMGL-like SHALO_1194 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1194 PF04055 Radical SAM superfamily SHALO_1195 PF01966 HD domain SHALO_1195 PF13492 GAF domain SHALO_1196 PF00072 Response regulator receiver domain SHALO_1196 PF00486 Transcriptional regulatory protein, C terminal SHALO_1197 PF00072 Response regulator receiver domain SHALO_1197 PF00563 EAL domain SHALO_1197 PF00990 GGDEF domain SHALO_1198 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1198 PF13426 PAS domain SHALO_1199 PF00072 Response regulator receiver domain SHALO_1200 PF00258 Flavodoxin SHALO_1200 PF00753 Metallo-beta-lactamase superfamily SHALO_1201 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1202 PF13187 4Fe-4S dicluster domain SHALO_1203 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1204 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1205 PF02574 Homocysteine S-methyltransferase SHALO_1206 PF00171 Aldehyde dehydrogenase family SHALO_1207 PF00924 Mechanosensitive ion channel SHALO_1208 PF00210 Ferritin-like domain SHALO_1209 PF01584 CheW-like domain SHALO_1210 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1211 PF03270 Protein of unknown function, DUF269 SHALO_1212 PF00258 Flavodoxin SHALO_1213 PF03206 SHALO_1213 SHALO_1214 PF04319 SHALO_1214 SHALO_1216 PF00111 2Fe-2S iron-sulfur cluster binding domain SHALO_1217 PF00309 SHALO_1217 SHALO_1217 PF04552 Sigma-54, DNA binding domain SHALO_1217 PF04963 Sigma-54 factor, core binding domain SHALO_1218 PF04891 SHALO_1218 SHALO_1219 PF13420 Acetyltransferase (GNAT) domain SHALO_1221 PF01850 PIN domain SHALO_1223 PF02498 SHALO_1223 SHALO_1224 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SHALO_1226 PF05167 Uncharacterised ACR (DUF711) SHALO_1227 PF10136 SHALO_1227 SHALO_1228 PF00905 Penicillin binding protein transpeptidase domain SHALO_1229 PF00563 EAL domain SHALO_1229 PF00990 GGDEF domain SHALO_1229 PF02743 Cache domain SHALO_1231 PF00691 OmpA family SHALO_1232 PF01618 SHALO_1232 SHALO_1233 PF05235 CHAD domain SHALO_1234 PF01863 Protein of unknown function DUF45 SHALO_1235 PF00583 Acetyltransferase (GNAT) family SHALO_1236 PF04221 RelB antitoxin SHALO_1237 PF15738 SHALO_1237 SHALO_1239 PF02567 Phenazine biosynthesis-like protein SHALO_1240 PF04773 FecR protein SHALO_1241 PF00691 OmpA family SHALO_1243 PF00561 alpha/beta hydrolase fold SHALO_1244 PF00892 EamA-like transporter family SHALO_1245 PF13536 Multidrug resistance efflux transporter SHALO_1247 PF00990 GGDEF domain SHALO_1248 PF00990 GGDEF domain SHALO_1249 PF00155 Aminotransferase class I and II SHALO_1249 PF00392 Bacterial regulatory proteins, gntR family SHALO_1251 PF12900 Pyridoxamine 5'-phosphate oxidase SHALO_1252 PF11059 SHALO_1252 SHALO_1253 PF01063 Aminotransferase class IV SHALO_1255 PF14022 SHALO_1255 SHALO_1256 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1256 PF02743 Cache domain SHALO_1257 PF00384 Molybdopterin oxidoreductase SHALO_1257 PF01568 Molydopterin dinucleotide binding domain SHALO_1259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_1261 PF00072 Response regulator receiver domain SHALO_1261 PF00486 Transcriptional regulatory protein, C terminal SHALO_1262 PF01042 Endoribonuclease L-PSP SHALO_1263 PF13302 Acetyltransferase (GNAT) domain SHALO_1265 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SHALO_1267 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1268 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1268 PF11844 Domain of unknown function (DUF3364) SHALO_1270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1271 PF00072 Response regulator receiver domain SHALO_1273 PF00072 Response regulator receiver domain SHALO_1274 PF00732 GMC oxidoreductase SHALO_1274 PF05199 GMC oxidoreductase SHALO_1275 PF13618 SHALO_1275 SHALO_1277 PF07681 SHALO_1277 SHALO_1278 PF00072 Response regulator receiver domain SHALO_1278 PF00486 Transcriptional regulatory protein, C terminal SHALO_1279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1280 PF00583 Acetyltransferase (GNAT) family SHALO_1280 PF00795 Carbon-nitrogen hydrolase SHALO_1281 PF00075 RNase H SHALO_1284 PF04972 BON domain SHALO_1285 PF13181 Tetratricopeptide repeat SHALO_1287 PF00072 Response regulator receiver domain SHALO_1287 PF00486 Transcriptional regulatory protein, C terminal SHALO_1288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1288 PF08495 SHALO_1288 SHALO_1288 PF10442 SHALO_1288 SHALO_1290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1291 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1291 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_1292 PF01155 Hydrogenase expression/synthesis hypA family SHALO_1293 PF13247 4Fe-4S dicluster domain SHALO_1294 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_1294 PF00374 Nickel-dependent hydrogenase SHALO_1295 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_1296 PF13187 4Fe-4S dicluster domain SHALO_1297 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_1298 PF01966 HD domain SHALO_1299 PF01936 NYN domain SHALO_1299 PF12872 OST-HTH/LOTUS domain SHALO_1300 PF05977 Transmembrane secretion effector SHALO_1301 PF04365 Protein of unknown function (DUF497) SHALO_1303 PF02589 Uncharacterised ACR, YkgG family COG1556 SHALO_1304 PF02589 Uncharacterised ACR, YkgG family COG1556 SHALO_1304 PF02754 SHALO_1304 SHALO_1304 PF13183 4Fe-4S dicluster domain SHALO_1306 PF00155 Aminotransferase class I and II SHALO_1307 PF02492 CobW/HypB/UreG, nucleotide-binding domain SHALO_1307 PF07683 Cobalamin synthesis protein cobW C-terminal domain SHALO_1308 PF04328 SHALO_1308 SHALO_1309 PF02554 SHALO_1309 SHALO_1309 PF13722 SHALO_1309 SHALO_1310 PF00248 Aldo/keto reductase family SHALO_1311 PF00890 FAD binding domain SHALO_1311 PF02910 Fumarate reductase flavoprotein C-term SHALO_1312 PF06988 NifT/FixU protein SHALO_1313 PF00158 Sigma-54 interaction domain SHALO_1313 PF13185 GAF domain SHALO_1314 PF13289 SHALO_1314 SHALO_1315 PF01880 Desulfoferrodoxin SHALO_1318 PF00586 AIR synthase related protein, N-terminal domain SHALO_1319 PF01142 tRNA pseudouridine synthase D (TruD) SHALO_1320 PF00999 Sodium/hydrogen exchanger family SHALO_1321 PF00563 EAL domain SHALO_1321 PF00990 GGDEF domain SHALO_1321 PF08269 Cache domain SHALO_1321 PF08448 PAS fold SHALO_1322 PF01381 Helix-turn-helix SHALO_1323 PF00990 GGDEF domain SHALO_1325 PF08543 Phosphomethylpyrimidine kinase SHALO_1326 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SHALO_1327 PF02110 Hydroxyethylthiazole kinase family SHALO_1328 PF00210 Ferritin-like domain SHALO_1329 PF02535 SHALO_1329 SHALO_1330 PF01381 Helix-turn-helix SHALO_1331 PF00990 GGDEF domain SHALO_1331 PF01966 HD domain SHALO_1332 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1332 PF13682 Chemoreceptor zinc-binding domain SHALO_1333 PF12706 Beta-lactamase superfamily domain SHALO_1335 PF00005 ABC transporter SHALO_1335 PF12848 ABC transporter SHALO_1336 PF00691 OmpA family SHALO_1336 PF13677 SHALO_1336 SHALO_1337 PF01618 SHALO_1337 SHALO_1338 PF00440 Bacterial regulatory proteins, tetR family SHALO_1338 PF14246 AefR-like transcriptional repressor, C-terminal region SHALO_1339 PF16576 SHALO_1339 SHALO_1340 PF00873 AcrB/AcrD/AcrF family SHALO_1341 PF02321 Outer membrane efflux protein SHALO_1342 PF13566 SHALO_1342 SHALO_1344 PF00881 Nitroreductase family SHALO_1345 PF00881 Nitroreductase family SHALO_1349 PF00875 DNA photolyase SHALO_1349 PF03441 FAD binding domain of DNA photolyase SHALO_1350 PF04463 SHALO_1350 SHALO_1350 PF08349 SHALO_1350 SHALO_1352 PF00501 AMP-binding enzyme SHALO_1352 PF14535 AMP-binding enzyme C-terminal domain SHALO_1354 PF00501 AMP-binding enzyme SHALO_1354 PF14535 AMP-binding enzyme C-terminal domain SHALO_1355 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_1356 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_1356 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1358 PF00474 Sodium:solute symporter family SHALO_1360 PF02561 Flagellar protein FliS SHALO_1361 PF02465 SHALO_1361 SHALO_1361 PF07195 SHALO_1361 SHALO_1362 PF03646 FlaG protein SHALO_1364 PF03602 Conserved hypothetical protein 95 SHALO_1365 PF02119 SHALO_1365 SHALO_1366 PF10135 SHALO_1366 SHALO_1367 PF04316 Anti-sigma-28 factor, FlgM SHALO_1369 PF00460 Flagella basal body rod protein SHALO_1369 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1370 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_1371 PF09674 SHALO_1371 SHALO_1372 PF00916 SHALO_1372 SHALO_1372 PF01740 STAS domain SHALO_1373 PF01361 Tautomerase enzyme SHALO_1374 PF00119 ATP synthase A chain SHALO_1376 PF02581 Thiamine monophosphate synthase/TENI SHALO_1377 PF02637 GatB domain SHALO_1377 PF02934 GatB/GatE catalytic domain SHALO_1378 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SHALO_1378 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SHALO_1379 PF00933 Glycosyl hydrolase family 3 N terminal domain SHALO_1380 PF00449 Urease alpha-subunit, N-terminal domain SHALO_1380 PF01979 Amidohydrolase family SHALO_1381 PF01416 tRNA pseudouridine synthase SHALO_1382 PF03739 SHALO_1382 SHALO_1383 PF01478 Type IV leader peptidase family SHALO_1383 PF06750 SHALO_1383 SHALO_1385 PF02441 Flavoprotein SHALO_1385 PF04127 DNA / pantothenate metabolism flavoprotein SHALO_1386 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1386 PF12804 MobA-like NTP transferase domain SHALO_1387 PF00813 SHALO_1387 SHALO_1388 PF01263 Aldose 1-epimerase SHALO_1389 PF01638 HxlR-like helix-turn-helix SHALO_1390 PF02525 Flavodoxin-like fold SHALO_1392 PF01910 Domain of unknown function DUF77 SHALO_1393 PF02308 SHALO_1393 SHALO_1393 PF13194 SHALO_1393 SHALO_1394 PF04055 Radical SAM superfamily SHALO_1394 PF08497 SHALO_1394 SHALO_1395 PF00342 Phosphoglucose isomerase SHALO_1397 PF00440 Bacterial regulatory proteins, tetR family SHALO_1398 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_1398 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SHALO_1399 PF00374 Nickel-dependent hydrogenase SHALO_1400 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_1400 PF10518 TAT (twin-arginine translocation) pathway signal sequence SHALO_1400 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SHALO_1401 PF00374 Nickel-dependent hydrogenase SHALO_1402 PF01292 Prokaryotic cytochrome b561 SHALO_1403 PF01750 Hydrogenase maturation protease SHALO_1405 PF00708 Acylphosphatase SHALO_1405 PF01300 Telomere recombination SHALO_1405 PF07503 HypF finger SHALO_1406 PF01402 Ribbon-helix-helix protein, copG family SHALO_1406 PF08753 NikR C terminal nickel binding domain SHALO_1407 PF00593 TonB dependent receptor SHALO_1407 PF07715 TonB-dependent Receptor Plug Domain SHALO_1408 PF13520 Amino acid permease SHALO_1410 PF02492 CobW/HypB/UreG, nucleotide-binding domain SHALO_1411 PF01455 HupF/HypC family SHALO_1412 PF01924 Hydrogenase formation hypA family SHALO_1413 PF00586 AIR synthase related protein, N-terminal domain SHALO_1413 PF02769 AIR synthase related protein, C-terminal domain SHALO_1414 PF01155 Hydrogenase expression/synthesis hypA family SHALO_1415 PF13420 Acetyltransferase (GNAT) domain SHALO_1416 PF13419 Haloacid dehalogenase-like hydrolase SHALO_1417 PF13109 SHALO_1417 SHALO_1417 PF13116 SHALO_1417 SHALO_1418 PF02618 YceG-like family SHALO_1419 PF03971 Monomeric isocitrate dehydrogenase SHALO_1420 PF00056 lactate/malate dehydrogenase, NAD binding domain SHALO_1420 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SHALO_1421 PF00549 CoA-ligase SHALO_1421 PF08442 ATP-grasp domain SHALO_1422 PF00549 CoA-ligase SHALO_1422 PF02629 CoA binding domain SHALO_1423 PF12838 4Fe-4S dicluster domain SHALO_1424 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_1424 PF17147 SHALO_1424 SHALO_1425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1426 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_1430 PF00206 Lyase SHALO_1430 PF10415 Fumarase C C-terminus SHALO_1432 PF00023 Ankyrin repeat SHALO_1432 PF12796 Ankyrin repeats (3 copies) SHALO_1433 PF01914 SHALO_1433 SHALO_1435 PF08901 SHALO_1435 SHALO_1436 PF01168 Alanine racemase, N-terminal domain SHALO_1437 PF00595 PDZ domain (Also known as DHR or GLGF) SHALO_1437 PF02163 Peptidase family M50 SHALO_1438 PF01066 CDP-alcohol phosphatidyltransferase SHALO_1439 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_1440 PF00701 Dihydrodipicolinate synthetase family SHALO_1441 PF00675 Insulinase (Peptidase family M16) SHALO_1441 PF05193 Peptidase M16 inactive domain SHALO_1442 PF01180 Dihydroorotate dehydrogenase SHALO_1443 PF00005 ABC transporter SHALO_1443 PF00664 ABC transporter transmembrane region SHALO_1444 PF01406 tRNA synthetases class I (C) catalytic domain SHALO_1445 PF03023 SHALO_1445 SHALO_1446 PF03961 SHALO_1446 SHALO_1447 PF01330 RuvA N terminal domain SHALO_1447 PF07499 RuvA, C-terminal domain SHALO_1447 PF14520 Helix-hairpin-helix domain SHALO_1448 PF01820 D-ala D-ala ligase N-terminus SHALO_1448 PF07478 D-ala D-ala ligase C-terminus SHALO_1449 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SHALO_1450 PF12697 Alpha/beta hydrolase family SHALO_1451 PF00708 Acylphosphatase SHALO_1452 PF08245 Mur ligase middle domain SHALO_1453 PF01515 Phosphate acetyl/butaryl transferase SHALO_1453 PF07085 DRTGG domain SHALO_1453 PF13500 AAA domain SHALO_1454 PF00871 Acetokinase family SHALO_1455 PF09424 Yqey-like protein SHALO_1456 PF02107 SHALO_1456 SHALO_1458 PF00482 Type II secretion system (T2SS), protein F SHALO_1459 PF00437 Type II/IV secretion system protein SHALO_1459 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SHALO_1461 PF13401 AAA domain SHALO_1462 PF00263 SHALO_1462 SHALO_1466 PF01926 50S ribosome-binding GTPase SHALO_1466 PF07650 KH domain SHALO_1467 PF07724 AAA domain (Cdc48 subfamily) SHALO_1467 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_1468 PF00227 Proteasome subunit SHALO_1469 PF01281 Ribosomal protein L9, N-terminal domain SHALO_1469 PF03948 Ribosomal protein L9, C-terminal domain SHALO_1470 PF00581 Rhodanese-like domain SHALO_1471 PF00764 Arginosuccinate synthase SHALO_1472 PF01479 S4 domain SHALO_1473 PF00591 Glycosyl transferase family, a/b domain SHALO_1473 PF02885 Glycosyl transferase family, helical bundle domain SHALO_1474 PF02367 Uncharacterised P-loop hydrolase UPF0079 SHALO_1475 PF00005 ABC transporter SHALO_1476 PF00309 SHALO_1476 SHALO_1476 PF04552 Sigma-54, DNA binding domain SHALO_1476 PF04963 Sigma-54 factor, core binding domain SHALO_1477 PF00226 DnaJ domain SHALO_1478 PF04376 SHALO_1478 SHALO_1478 PF04377 SHALO_1478 SHALO_1481 PF03573 outer membrane porin, OprD family SHALO_1482 PF13359 SHALO_1482 SHALO_1483 PF13613 SHALO_1483 SHALO_1484 PF13487 HD domain SHALO_1486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1486 PF02743 Cache domain SHALO_1487 PF00072 Response regulator receiver domain SHALO_1487 PF00486 Transcriptional regulatory protein, C terminal SHALO_1488 PF14537 Cytochrome c3 SHALO_1489 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_1490 PF00890 FAD binding domain SHALO_1491 PF00925 GTP cyclohydrolase II SHALO_1492 PF00925 GTP cyclohydrolase II SHALO_1492 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SHALO_1493 PF00885 6,7-dimethyl-8-ribityllumazine synthase SHALO_1494 PF02627 Carboxymuconolactone decarboxylase family SHALO_1495 PF13484 SHALO_1495 SHALO_1495 PF13486 SHALO_1495 SHALO_1497 PF01592 NifU-like N terminal domain SHALO_1498 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1498 PF07695 SHALO_1498 SHALO_1499 PF00072 Response regulator receiver domain SHALO_1499 PF00486 Transcriptional regulatory protein, C terminal SHALO_1500 PF13484 SHALO_1500 SHALO_1500 PF13486 SHALO_1500 SHALO_1502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1502 PF07695 SHALO_1502 SHALO_1503 PF00072 Response regulator receiver domain SHALO_1503 PF00486 Transcriptional regulatory protein, C terminal SHALO_1504 PF14358 SHALO_1504 SHALO_1505 PF00037 4Fe-4S binding domain SHALO_1505 PF12800 4Fe-4S binding domain SHALO_1505 PF12838 4Fe-4S dicluster domain SHALO_1506 PF00037 4Fe-4S binding domain SHALO_1506 PF12801 SHALO_1506 SHALO_1507 PF03186 SHALO_1507 SHALO_1508 PF00155 Aminotransferase class I and II SHALO_1509 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SHALO_1510 PF07685 CobB/CobQ-like glutamine amidotransferase domain SHALO_1510 PF13500 AAA domain SHALO_1511 PF02277 Phosphoribosyltransferase SHALO_1512 PF04071 SHALO_1512 SHALO_1513 PF02654 SHALO_1513 SHALO_1514 PF00300 Histidine phosphatase superfamily (branch 1) SHALO_1515 PF06180 Cobalt chelatase (CbiK) SHALO_1516 PF01032 FecCD transport family SHALO_1517 PF00005 ABC transporter SHALO_1518 PF01497 Periplasmic binding protein SHALO_1519 PF02570 Precorrin-8X methylmutase SHALO_1520 PF01888 CbiD SHALO_1521 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1522 PF13847 Methyltransferase domain SHALO_1523 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1524 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1525 PF01890 Cobalamin synthesis G C-terminus SHALO_1525 PF11760 Cobalamin synthesis G N-terminal SHALO_1525 PF11761 SHALO_1525 SHALO_1526 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1527 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_1527 PF02602 Uroporphyrinogen-III synthase HemD SHALO_1528 PF02571 SHALO_1528 SHALO_1529 PF00005 ABC transporter SHALO_1529 PF00664 ABC transporter transmembrane region SHALO_1530 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SHALO_1530 PF07685 CobB/CobQ-like glutamine amidotransferase domain SHALO_1531 PF14375 SHALO_1531 SHALO_1532 PF13241 Putative NAD(P)-binding SHALO_1533 PF00440 Bacterial regulatory proteins, tetR family SHALO_1534 PF03358 NADPH-dependent FMN reductase SHALO_1535 PF00355 Rieske [2Fe-2S] domain SHALO_1536 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_1554 PF00589 Phage integrase family SHALO_1554 PF13356 Domain of unknown function (DUF4102) SHALO_1556 PF00216 Bacterial DNA-binding protein SHALO_1557 PF00669 Bacterial flagellin N-terminal helical region SHALO_1557 PF00700 Bacterial flagellin C-terminal helical region SHALO_1558 PF01580 FtsK/SpoIIIE family SHALO_1558 PF09397 Ftsk gamma domain SHALO_1558 PF13491 SHALO_1558 SHALO_1559 PF00330 Aconitase family (aconitate hydratase) SHALO_1559 PF06434 Aconitate hydratase 2 N-terminus SHALO_1559 PF11791 Aconitate B N-terminal domain SHALO_1561 PF00391 PEP-utilising enzyme, mobile domain SHALO_1561 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SHALO_1561 PF02896 PEP-utilising enzyme, TIM barrel domain SHALO_1562 PF07690 Major Facilitator Superfamily SHALO_1564 PF02310 B12 binding domain SHALO_1564 PF04055 Radical SAM superfamily SHALO_1564 PF13311 SHALO_1564 SHALO_1566 PF05958 tRNA (Uracil-5-)-methyltransferase SHALO_1567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1568 PF13380 CoA binding domain SHALO_1569 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1571 PF00005 ABC transporter SHALO_1572 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_1573 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_1574 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_1575 PF01474 Class-II DAHP synthetase family SHALO_1576 PF00226 DnaJ domain SHALO_1577 PF09335 SHALO_1577 SHALO_1578 PF01880 Desulfoferrodoxin SHALO_1579 PF00005 ABC transporter SHALO_1580 PF00171 Aldehyde dehydrogenase family SHALO_1581 PF13738 Pyridine nucleotide-disulphide oxidoreductase SHALO_1583 PF05175 Methyltransferase small domain SHALO_1584 PF03692 SHALO_1584 SHALO_1586 PF00218 Indole-3-glycerol phosphate synthase SHALO_1587 PF01230 HIT domain SHALO_1588 PF00581 Rhodanese-like domain SHALO_1589 PF10670 SHALO_1589 SHALO_1590 PF01891 Cobalt uptake substrate-specific transmembrane region SHALO_1592 PF02361 Cobalt transport protein SHALO_1593 PF00005 ABC transporter SHALO_1594 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SHALO_1595 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SHALO_1596 PF01292 Prokaryotic cytochrome b561 SHALO_1596 PF09626 Dihaem cytochrome c SHALO_1597 PF00034 Cytochrome c SHALO_1598 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1600 PF02541 Ppx/GppA phosphatase family SHALO_1601 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_1601 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1601 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_1602 PF01842 ACT domain SHALO_1602 PF10369 Small subunit of acetolactate synthase SHALO_1603 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1603 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SHALO_1605 PF07992 Pyridine nucleotide-disulphide oxidoreductase SHALO_1605 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_1606 PF00155 Aminotransferase class I and II SHALO_1607 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1608 PF00158 Sigma-54 interaction domain SHALO_1608 PF02954 Bacterial regulatory protein, Fis family SHALO_1608 PF13185 GAF domain SHALO_1609 PF12900 Pyridoxamine 5'-phosphate oxidase SHALO_1610 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1611 PF03139 SHALO_1611 SHALO_1612 PF00148 Nitrogenase component 1 type Oxidoreductase SHALO_1613 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1614 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SHALO_1615 PF03129 Anticodon binding domain SHALO_1615 PF13393 Histidyl-tRNA synthetase SHALO_1616 PF02223 Thymidylate kinase SHALO_1617 PF01467 Cytidylyltransferase SHALO_1618 PF02441 Flavoprotein SHALO_1619 PF13144 SAF-like SHALO_1621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1622 PF00994 Probable molybdopterin binding domain SHALO_1622 PF03453 MoeA N-terminal region (domain I and II) SHALO_1623 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SHALO_1626 PF11381 SHALO_1626 SHALO_1628 PF00939 Sodium:sulfate symporter transmembrane region SHALO_1630 PF00731 AIR carboxylase SHALO_1632 PF01969 Protein of unknown function DUF111 SHALO_1633 PF09861 Domain of unknown function (DUF2088) SHALO_1634 PF05683 Fumarase C-terminus SHALO_1635 PF05681 SHALO_1635 SHALO_1636 PF03605 SHALO_1636 SHALO_1637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1637 PF04392 ABC transporter substrate binding protein SHALO_1637 PF13426 PAS domain SHALO_1638 PF00072 Response regulator receiver domain SHALO_1638 PF00486 Transcriptional regulatory protein, C terminal SHALO_1639 PF07690 Major Facilitator Superfamily SHALO_1641 PF00300 Histidine phosphatase superfamily (branch 1) SHALO_1642 PF01544 CorA-like Mg2+ transporter protein SHALO_1643 PF00589 Phage integrase family SHALO_1644 PF01702 Queuine tRNA-ribosyltransferase SHALO_1645 PF02080 TrkA-C domain SHALO_1646 PF01761 3-dehydroquinate synthase SHALO_1647 PF00924 Mechanosensitive ion channel SHALO_1648 PF00919 Uncharacterized protein family UPF0004 SHALO_1648 PF04055 Radical SAM superfamily SHALO_1649 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1649 PF01434 Peptidase family M41 SHALO_1651 PF00085 Thioredoxin SHALO_1653 PF00296 Luciferase-like monooxygenase SHALO_1654 PF04471 Restriction endonuclease SHALO_1654 PF06114 Domain of unknown function (DUF955) SHALO_1655 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_1657 PF08279 HTH domain SHALO_1657 PF13280 SHALO_1657 SHALO_1658 PF00849 RNA pseudouridylate synthase SHALO_1660 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_1660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_1660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_1661 PF01323 DSBA-like thioredoxin domain SHALO_1663 PF04960 Glutaminase SHALO_1664 PF00563 EAL domain SHALO_1664 PF00990 GGDEF domain SHALO_1665 PF12625 SHALO_1665 SHALO_1665 PF12833 Helix-turn-helix domain SHALO_1666 PF03653 SHALO_1666 SHALO_1667 PF00440 Bacterial regulatory proteins, tetR family SHALO_1668 PF02321 Outer membrane efflux protein SHALO_1669 PF16576 SHALO_1669 SHALO_1670 PF00873 AcrB/AcrD/AcrF family SHALO_1672 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1672 PF08495 SHALO_1672 SHALO_1672 PF10442 SHALO_1672 SHALO_1673 PF02915 Rubrerythrin SHALO_1673 PF06397 Desulfoferrodoxin, N-terminal domain SHALO_1675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SHALO_1676 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SHALO_1676 PF03900 Porphobilinogen deaminase, C-terminal domain SHALO_1677 PF13462 Thioredoxin SHALO_1678 PF04186 SHALO_1678 SHALO_1679 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_1679 PF03129 Anticodon binding domain SHALO_1679 PF04073 Aminoacyl-tRNA editing domain SHALO_1680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SHALO_1680 PF01488 Shikimate / quinate 5-dehydrogenase SHALO_1680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SHALO_1681 PF00348 Polyprenyl synthetase SHALO_1683 PF09442 Domain of unknown function (DUF2018) SHALO_1684 PF01053 Cys/Met metabolism PLP-dependent enzyme SHALO_1685 PF02082 Transcriptional regulator SHALO_1686 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1687 PF00990 GGDEF domain SHALO_1688 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_1688 PF08264 Anticodon-binding domain of tRNA SHALO_1688 PF10458 Valyl tRNA synthetase tRNA binding arm SHALO_1689 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_1690 PF00994 Probable molybdopterin binding domain SHALO_1691 PF02558 Ketopantoate reductase PanE/ApbA SHALO_1691 PF08546 Ketopantoate reductase PanE/ApbA C terminal SHALO_1692 PF00815 Histidinol dehydrogenase SHALO_1694 PF01116 Fructose-bisphosphate aldolase class-II SHALO_1695 PF13616 PPIC-type PPIASE domain SHALO_1696 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_1697 PF00578 AhpC/TSA family SHALO_1698 PF01546 Peptidase family M20/M25/M40 SHALO_1700 PF08003 Protein of unknown function (DUF1698) SHALO_1702 PF00753 Metallo-beta-lactamase superfamily SHALO_1703 PF02540 NAD synthase SHALO_1704 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_1705 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SHALO_1706 PF00696 Amino acid kinase family SHALO_1707 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_1707 PF14821 Threonine synthase N terminus SHALO_1708 PF02348 Cytidylyltransferase SHALO_1711 PF02683 SHALO_1711 SHALO_1711 PF11412 Disulphide bond corrector protein DsbC SHALO_1711 PF13899 Thioredoxin-like SHALO_1712 PF03976 Polyphosphate kinase 2 (PPK2) SHALO_1713 PF00012 Hsp70 protein SHALO_1714 PF01025 GrpE SHALO_1718 PF00312 Ribosomal protein S15 SHALO_1719 PF02082 Transcriptional regulator SHALO_1720 PF00771 FHIPEP family SHALO_1723 PF13649 Methyltransferase domain SHALO_1724 PF00990 GGDEF domain SHALO_1725 PF01687 Riboflavin kinase SHALO_1725 PF06574 FAD synthetase SHALO_1726 PF01479 S4 domain SHALO_1726 PF01728 FtsJ-like methyltransferase SHALO_1727 PF00533 BRCA1 C Terminus (BRCT) domain SHALO_1727 PF01653 NAD-dependent DNA ligase adenylation domain SHALO_1727 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SHALO_1727 PF03120 NAD-dependent DNA ligase OB-fold domain SHALO_1727 PF12826 Helix-hairpin-helix motif SHALO_1727 PF14520 Helix-hairpin-helix domain SHALO_1728 PF01925 SHALO_1728 SHALO_1730 PF00809 Pterin binding enzyme SHALO_1731 PF13177 DNA polymerase III, delta subunit SHALO_1732 PF12163 DNA replication regulator SHALO_1733 PF00696 Amino acid kinase family SHALO_1733 PF01842 ACT domain SHALO_1733 PF13840 ACT domain SHALO_1734 PF00293 NUDIX domain SHALO_1735 PF04055 Radical SAM superfamily SHALO_1736 PF00999 Sodium/hydrogen exchanger family SHALO_1736 PF02254 TrkA-N domain SHALO_1737 PF13411 MerR HTH family regulatory protein SHALO_1738 PF00226 DnaJ domain SHALO_1738 PF01556 DnaJ C terminal domain SHALO_1739 PF13180 PDZ domain SHALO_1739 PF13365 Trypsin-like peptidase domain SHALO_1740 PF00072 Response regulator receiver domain SHALO_1740 PF00486 Transcriptional regulatory protein, C terminal SHALO_1741 PF00672 HAMP domain SHALO_1741 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1743 PF02687 SHALO_1743 SHALO_1744 PF01043 SecA preprotein cross-linking domain SHALO_1744 PF02810 SEC-C motif SHALO_1744 PF07516 SecA Wing and Scaffold domain SHALO_1744 PF07517 SecA DEAD-like domain SHALO_1745 PF03548 Outer membrane lipoprotein carrier protein LolA SHALO_1746 PF00563 EAL domain SHALO_1746 PF00990 GGDEF domain SHALO_1746 PF11845 SHALO_1746 SHALO_1747 PF06965 Na+/H+ antiporter 1 SHALO_1748 PF01926 50S ribosome-binding GTPase SHALO_1748 PF10396 GTP-binding protein TrmE N-terminus SHALO_1748 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE SHALO_1749 PF14804 Jag N-terminus SHALO_1750 PF02096 60Kd inner membrane protein SHALO_1750 PF14849 YidC periplasmic domain SHALO_1751 PF01809 SHALO_1751 SHALO_1752 PF00501 AMP-binding enzyme SHALO_1753 PF13941 SHALO_1753 SHALO_1754 PF06368 Methylaspartate mutase E chain (MutE) SHALO_1755 PF02310 B12 binding domain SHALO_1757 PF03737 Demethylmenaquinone methyltransferase SHALO_1760 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_1760 PF02861 Clp amino terminal domain SHALO_1760 PF07724 AAA domain (Cdc48 subfamily) SHALO_1760 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_1761 PF03572 Peptidase family S41 SHALO_1761 PF13180 PDZ domain SHALO_1762 PF01259 SAICAR synthetase SHALO_1763 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SHALO_1764 PF13507 CobB/CobQ-like glutamine amidotransferase domain SHALO_1766 PF01553 Acyltransferase SHALO_1767 PF00183 Hsp90 protein SHALO_1767 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1769 PF03190 Protein of unknown function, DUF255 SHALO_1770 PF00581 Rhodanese-like domain SHALO_1771 PF13245 Part of AAA domain SHALO_1771 PF13361 UvrD-like helicase C-terminal domain SHALO_1773 PF12895 Anaphase-promoting complex, cyclosome, subunit 3 SHALO_1774 PF13401 AAA domain SHALO_1775 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_1778 PF02689 SHALO_1778 SHALO_1778 PF05970 SHALO_1778 SHALO_1779 PF00877 NlpC/P60 family SHALO_1779 PF12912 NLPC_P60 stabilising domain, N term SHALO_1779 PF12913 SH3 domain of the SH3b1 type SHALO_1779 PF12914 SH3 domain of SH3b2 type SHALO_1779 PF13539 D-alanyl-D-alanine carboxypeptidase SHALO_1780 PF00857 Isochorismatase family SHALO_1781 PF08410 SHALO_1781 SHALO_1782 PF08534 Redoxin SHALO_1783 PF05940 SHALO_1783 SHALO_1784 PF00403 Heavy-metal-associated domain SHALO_1785 PF00122 E1-E2 ATPase SHALO_1785 PF00403 Heavy-metal-associated domain SHALO_1785 PF00702 haloacid dehalogenase-like hydrolase SHALO_1786 PF02743 Cache domain SHALO_1786 PF13487 HD domain SHALO_1787 PF02646 SHALO_1787 SHALO_1789 PF01795 MraW methylase family SHALO_1790 PF00202 Aminotransferase class-III SHALO_1791 PF13145 PPIC-type PPIASE domain SHALO_1791 PF13624 SurA N-terminal domain SHALO_1792 PF02491 SHS2 domain inserted in FTSA SHALO_1792 PF14450 Cell division protein FtsA SHALO_1793 PF00091 Tubulin/FtsZ family, GTPase domain SHALO_1793 PF12327 FtsZ family, C-terminal domain SHALO_1794 PF13664 SHALO_1794 SHALO_1795 PF05175 Methyltransferase small domain SHALO_1796 PF01435 Peptidase family M48 SHALO_1796 PF16491 SHALO_1796 SHALO_1797 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1797 PF12729 SHALO_1797 SHALO_1798 PF00005 ABC transporter SHALO_1798 PF12848 ABC transporter SHALO_1798 PF16326 SHALO_1798 SHALO_1799 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1799 PF00672 HAMP domain SHALO_1801 PF01883 Domain of unknown function DUF59 SHALO_1804 PF02705 SHALO_1804 SHALO_1805 PF01808 AICARFT/IMPCHase bienzyme SHALO_1805 PF02142 MGS-like domain SHALO_1806 PF02600 Disulfide bond formation protein DsbB SHALO_1807 PF13462 Thioredoxin SHALO_1808 PF03061 Thioesterase superfamily SHALO_1809 PF00226 DnaJ domain SHALO_1809 PF05099 Tellurite resistance protein TerB SHALO_1810 PF00155 Aminotransferase class I and II SHALO_1811 PF00149 Calcineurin-like phosphoesterase SHALO_1812 PF00877 NlpC/P60 family SHALO_1814 PF09997 SHALO_1814 SHALO_1815 PF00586 AIR synthase related protein, N-terminal domain SHALO_1815 PF02769 AIR synthase related protein, C-terminal domain SHALO_1816 PF00563 EAL domain SHALO_1816 PF00990 GGDEF domain SHALO_1816 PF08447 PAS fold SHALO_1817 PF02416 mttA/Hcf106 family SHALO_1818 PF00902 Sec-independent protein translocase protein (TatC) SHALO_1819 PF02547 Queuosine biosynthesis protein SHALO_1820 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB SHALO_1820 PF08479 POTRA domain, ShlB-type SHALO_1820 PF17287 SHALO_1820 SHALO_1821 PF05860 haemagglutination activity domain SHALO_1821 PF13332 SHALO_1821 SHALO_1828 PF05656 SHALO_1828 SHALO_1832 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1833 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_1834 PF00072 Response regulator receiver domain SHALO_1834 PF01966 HD domain SHALO_1835 PF00072 Response regulator receiver domain SHALO_1835 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1836 PF07521 RNA-metabolising metallo-beta-lactamase SHALO_1836 PF10996 Beta-Casp domain SHALO_1836 PF16661 SHALO_1836 SHALO_1837 PF00501 AMP-binding enzyme SHALO_1839 PF00593 TonB dependent receptor SHALO_1839 PF07715 TonB-dependent Receptor Plug Domain SHALO_1840 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1840 PF13493 Domain of unknown function (DUF4118) SHALO_1841 PF00072 Response regulator receiver domain SHALO_1841 PF00486 Transcriptional regulatory protein, C terminal SHALO_1842 PF02386 Cation transport protein SHALO_1843 PF02254 TrkA-N domain SHALO_1844 PF01641 SelR domain SHALO_1845 PF00571 CBS domain SHALO_1845 PF01595 SHALO_1845 SHALO_1846 PF00300 Histidine phosphatase superfamily (branch 1) SHALO_1847 PF12804 MobA-like NTP transferase domain SHALO_1848 PF02625 XdhC and CoxI family SHALO_1848 PF13478 XdhC Rossmann domain SHALO_1849 PF00501 AMP-binding enzyme SHALO_1850 PF04055 Radical SAM superfamily SHALO_1850 PF13353 4Fe-4S single cluster domain SHALO_1851 PF09719 Putative redox-active protein (C_GCAxxG_C_C) SHALO_1852 PF08241 Methyltransferase domain SHALO_1854 PF02754 SHALO_1854 SHALO_1854 PF13450 NAD(P)-binding Rossmann-like domain SHALO_1854 PF13534 4Fe-4S dicluster domain SHALO_1854 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SHALO_1855 PF00111 2Fe-2S iron-sulfur cluster binding domain SHALO_1855 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SHALO_1855 PF01799 [2Fe-2S] binding domain SHALO_1855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SHALO_1856 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1856 PF08495 SHALO_1856 SHALO_1856 PF10442 SHALO_1856 SHALO_1857 PF00072 Response regulator receiver domain SHALO_1857 PF00486 Transcriptional regulatory protein, C terminal SHALO_1859 PF01292 Prokaryotic cytochrome b561 SHALO_1861 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1862 PF00072 Response regulator receiver domain SHALO_1862 PF00486 Transcriptional regulatory protein, C terminal SHALO_1863 PF02583 Metal-sensitive transcriptional repressor SHALO_1864 PF01545 Cation efflux family SHALO_1866 PF03929 SHALO_1866 SHALO_1868 PF00593 TonB dependent receptor SHALO_1868 PF07715 TonB-dependent Receptor Plug Domain SHALO_1869 PF12833 Helix-turn-helix domain SHALO_1870 PF00924 Mechanosensitive ion channel SHALO_1871 PF00982 Glycosyltransferase family 20 SHALO_1871 PF05116 Sucrose-6F-phosphate phosphohydrolase SHALO_1872 PF01909 Nucleotidyltransferase domain SHALO_1874 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SHALO_1877 PF02146 Sir2 family SHALO_1878 PF00561 alpha/beta hydrolase fold SHALO_1879 PF00809 Pterin binding enzyme SHALO_1879 PF02310 B12 binding domain SHALO_1879 PF02574 Homocysteine S-methyltransferase SHALO_1879 PF02607 B12 binding domain SHALO_1879 PF02965 Vitamin B12 dependent methionine synthase, activation domain SHALO_1880 PF13458 Periplasmic binding protein SHALO_1881 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1882 PF01810 SHALO_1882 SHALO_1883 PF00892 EamA-like transporter family SHALO_1884 PF00884 Sulfatase SHALO_1885 PF00909 Ammonium Transporter Family SHALO_1886 PF00543 Nitrogen regulatory protein P-II SHALO_1888 PF00384 Molybdopterin oxidoreductase SHALO_1889 PF00990 GGDEF domain SHALO_1889 PF01966 HD domain SHALO_1889 PF11845 SHALO_1889 SHALO_1890 PF02092 SHALO_1890 SHALO_1892 PF03372 Endonuclease/Exonuclease/phosphatase family SHALO_1893 PF00484 Carbonic anhydrase SHALO_1894 PF06865 Protein of unknown function (DUF1255) SHALO_1895 PF00563 EAL domain SHALO_1895 PF00990 GGDEF domain SHALO_1895 PF03924 CHASE domain SHALO_1895 PF08448 PAS fold SHALO_1896 PF03486 HI0933-like protein SHALO_1897 PF04402 Protein of unknown function (DUF541) SHALO_1898 PF00588 SpoU rRNA Methylase family SHALO_1899 PF00551 Formyl transferase SHALO_1900 PF01743 Poly A polymerase head domain SHALO_1903 PF00180 Isocitrate/isopropylmalate dehydrogenase SHALO_1904 PF00694 Aconitase C-terminal domain SHALO_1905 PF00005 ABC transporter SHALO_1906 PF10543 SHALO_1906 SHALO_1907 PF00873 AcrB/AcrD/AcrF family SHALO_1908 PF01810 SHALO_1908 SHALO_1909 PF01022 Bacterial regulatory protein, arsR family SHALO_1910 PF03372 Endonuclease/Exonuclease/phosphatase family SHALO_1911 PF08447 PAS fold SHALO_1912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1913 PF00293 NUDIX domain SHALO_1914 PF00174 Oxidoreductase molybdopterin binding domain SHALO_1915 PF01794 SHALO_1915 SHALO_1916 PF01810 SHALO_1916 SHALO_1917 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_1917 PF12729 SHALO_1917 SHALO_1918 PF06719 SHALO_1918 SHALO_1918 PF12833 Helix-turn-helix domain SHALO_1919 PF03358 NADPH-dependent FMN reductase SHALO_1920 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SHALO_1921 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_1922 PF00990 GGDEF domain SHALO_1923 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_1924 PF09962 SHALO_1924 SHALO_1925 PF00270 DEAD/DEAH box helicase SHALO_1925 PF00271 Helicase conserved C-terminal domain SHALO_1925 PF00570 HRDC domain SHALO_1925 PF09382 RQC domain SHALO_1925 PF16124 SHALO_1925 SHALO_1926 PF03061 Thioesterase superfamily SHALO_1928 PF00270 DEAD/DEAH box helicase SHALO_1928 PF00271 Helicase conserved C-terminal domain SHALO_1929 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_1930 PF00990 GGDEF domain SHALO_1930 PF13426 PAS domain SHALO_1930 PF14827 Sensory domain of two-component sensor kinase SHALO_1931 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1931 PF00672 HAMP domain SHALO_1931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1932 PF00072 Response regulator receiver domain SHALO_1932 PF00486 Transcriptional regulatory protein, C terminal SHALO_1933 PF07813 LTXXQ motif family protein SHALO_1934 PF01292 Prokaryotic cytochrome b561 SHALO_1934 PF09626 Dihaem cytochrome c SHALO_1935 PF09626 Dihaem cytochrome c SHALO_1936 PF09086 Domain of unknown function (DUF1924) SHALO_1938 PF00501 AMP-binding enzyme SHALO_1938 PF13193 AMP-binding enzyme C-terminal domain SHALO_1938 PF16177 SHALO_1938 SHALO_1939 PF13714 Phosphoenolpyruvate phosphomutase SHALO_1940 PF00285 Citrate synthase SHALO_1941 PF03972 MmgE/PrpD family SHALO_1943 PF03831 PhnA protein SHALO_1943 PF08274 PhnA Zinc-Ribbon SHALO_1944 PF05437 SHALO_1944 SHALO_1945 PF03591 SHALO_1945 SHALO_1947 PF00460 Flagella basal body rod protein SHALO_1947 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1948 PF00460 Flagella basal body rod protein SHALO_1948 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_1949 PF00140 Sigma-70 factor, region 1 SHALO_1949 PF04539 Sigma-70 region 3 SHALO_1949 PF04542 Sigma-70 region 2 SHALO_1949 PF04545 Sigma-70, region 4 SHALO_1951 PF01638 HxlR-like helix-turn-helix SHALO_1952 PF07978 NIPSNAP SHALO_1953 PF03358 NADPH-dependent FMN reductase SHALO_1954 PF07277 SHALO_1954 SHALO_1955 PF00501 AMP-binding enzyme SHALO_1955 PF13193 AMP-binding enzyme C-terminal domain SHALO_1955 PF16177 SHALO_1955 SHALO_1956 PF00474 Sodium:solute symporter family SHALO_1957 PF04341 SHALO_1957 SHALO_1958 PF00072 Response regulator receiver domain SHALO_1958 PF00486 Transcriptional regulatory protein, C terminal SHALO_1959 PF00512 His Kinase A (phospho-acceptor) domain SHALO_1959 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_1960 PF04371 Porphyromonas-type peptidyl-arginine deiminase SHALO_1961 PF01545 Cation efflux family SHALO_1961 PF16916 SHALO_1961 SHALO_1962 PF02421 Ferrous iron transport protein B SHALO_1962 PF07664 SHALO_1962 SHALO_1962 PF07670 Nucleoside recognition SHALO_1963 PF04023 FeoA domain SHALO_1964 PF00795 Carbon-nitrogen hydrolase SHALO_1965 PF13304 AAA domain SHALO_1968 PF03459 TOBE domain SHALO_1970 PF01544 CorA-like Mg2+ transporter protein SHALO_1971 PF01551 Peptidase family M23 SHALO_1972 PF15436 SHALO_1972 SHALO_1973 PF01565 FAD binding domain SHALO_1973 PF02913 FAD linked oxidases, C-terminal domain SHALO_1974 PF03631 SHALO_1974 SHALO_1975 PF03772 SHALO_1975 SHALO_1976 PF00772 DnaB-like helicase N terminal domain SHALO_1976 PF03796 DnaB-like helicase C terminal domain SHALO_1976 PF05203 Hom_end-associated Hint SHALO_1976 PF05204 Homing endonuclease SHALO_1977 PF04551 GcpE protein SHALO_1978 PF00270 DEAD/DEAH box helicase SHALO_1978 PF00271 Helicase conserved C-terminal domain SHALO_1979 PF07963 Prokaryotic N-terminal methylation motif SHALO_1980 PF07963 Prokaryotic N-terminal methylation motif SHALO_1983 PF00271 Helicase conserved C-terminal domain SHALO_1983 PF02151 UvrB/uvrC motif SHALO_1983 PF04851 Type III restriction enzyme, res subunit SHALO_1983 PF12344 Ultra-violet resistance protein B SHALO_1984 PF02503 Polyphosphate kinase middle domain SHALO_1984 PF13089 Polyphosphate kinase N-terminal domain SHALO_1984 PF13090 Polyphosphate kinase C-terminal domain SHALO_1985 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_1986 PF00929 Exonuclease SHALO_1987 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SHALO_1988 PF00834 Ribulose-phosphate 3 epimerase family SHALO_1989 PF01960 ArgJ family SHALO_1990 PF04325 Protein of unknown function (DUF465) SHALO_1991 PF00633 Helix-hairpin-helix motif SHALO_1991 PF00730 HhH-GPD superfamily base excision DNA repair protein SHALO_1992 PF13277 YmdB-like protein SHALO_1993 PF00270 DEAD/DEAH box helicase SHALO_1993 PF00271 Helicase conserved C-terminal domain SHALO_1993 PF02559 CarD-like/TRCF domain SHALO_1993 PF03461 TRCF domain SHALO_1994 PF04519 SHALO_1994 SHALO_1995 PF01551 Peptidase family M23 SHALO_1997 PF00990 GGDEF domain SHALO_1998 PF04390 Lipopolysaccharide-assembly SHALO_1999 PF00133 tRNA synthetases class I (I, L, M and V) SHALO_1999 PF09334 tRNA synthetases class I (M) SHALO_1999 PF13603 Leucyl-tRNA synthetase, Domain 2 SHALO_2000 PF02355 Protein export membrane protein SHALO_2000 PF07549 SecD/SecF GG Motif SHALO_2001 PF02355 Protein export membrane protein SHALO_2002 PF02699 Preprotein translocase subunit SHALO_2003 PF00795 Carbon-nitrogen hydrolase SHALO_2004 PF00438 S-adenosylmethionine synthetase, N-terminal domain SHALO_2004 PF02772 S-adenosylmethionine synthetase, central domain SHALO_2004 PF02773 S-adenosylmethionine synthetase, C-terminal domain SHALO_2005 PF03547 SHALO_2005 SHALO_2006 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SHALO_2007 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_2007 PF02861 Clp amino terminal domain SHALO_2007 PF07724 AAA domain (Cdc48 subfamily) SHALO_2007 PF10431 C-terminal, D2-small domain, of ClpB protein SHALO_2008 PF02617 ATP-dependent Clp protease adaptor protein ClpS SHALO_2010 PF01668 SmpB protein SHALO_2011 PF00288 GHMP kinases N terminal domain SHALO_2012 PF02599 Global regulator protein family SHALO_2013 PF01509 TruB family pseudouridylate synthase (N terminal domain) SHALO_2014 PF00580 UvrD/REP helicase N-terminal domain SHALO_2014 PF13361 UvrD-like helicase C-terminal domain SHALO_2015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2015 PF03466 LysR substrate binding domain SHALO_2017 PF01432 Peptidase family M3 SHALO_2017 PF08439 Oligopeptidase F SHALO_2018 PF01063 Aminotransferase class IV SHALO_2019 PF00425 chorismate binding enzyme SHALO_2020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SHALO_2020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SHALO_2021 PF05433 SHALO_2021 SHALO_2022 PF13500 AAA domain SHALO_2024 PF06445 GyrI-like small molecule binding domain SHALO_2024 PF12833 Helix-turn-helix domain SHALO_2025 PF00155 Aminotransferase class I and II SHALO_2027 PF10670 SHALO_2027 SHALO_2028 PF01937 Protein of unknown function DUF89 SHALO_2029 PF01245 Ribosomal protein L19 SHALO_2030 PF01746 tRNA (Guanine-1)-methyltransferase SHALO_2031 PF01782 RimM N-terminal domain SHALO_2032 PF13083 KH domain SHALO_2033 PF00886 Ribosomal protein S16 SHALO_2034 PF00448 SRP54-type protein, GTPase domain SHALO_2034 PF02881 SRP54-type protein, helical bundle domain SHALO_2034 PF02978 Signal peptide binding domain SHALO_2035 PF00849 RNA pseudouridylate synthase SHALO_2036 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SHALO_2037 PF02591 Putative zinc ribbon domain SHALO_2038 PF01784 NIF3 (NGG1p interacting factor 3) SHALO_2039 PF02091 Glycyl-tRNA synthetase alpha subunit SHALO_2040 PF13118 SHALO_2040 SHALO_2041 PF00731 AIR carboxylase SHALO_2042 PF01136 SHALO_2042 SHALO_2044 PF02811 PHP domain SHALO_2045 PF00120 Glutamine synthetase, catalytic domain SHALO_2045 PF03951 Glutamine synthetase, beta-Grasp domain SHALO_2046 PF00905 Penicillin binding protein transpeptidase domain SHALO_2046 PF00912 Transglycosylase SHALO_2047 PF00005 ABC transporter SHALO_2048 PF00155 Aminotransferase class I and II SHALO_2049 PF02545 Maf-like protein SHALO_2051 PF01411 tRNA synthetases class II (A) SHALO_2051 PF02272 DHHA1 domain SHALO_2051 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_2053 PF00072 Response regulator receiver domain SHALO_2053 PF00486 Transcriptional regulatory protein, C terminal SHALO_2054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2054 PF13426 PAS domain SHALO_2055 PF00384 Molybdopterin oxidoreductase SHALO_2055 PF01568 Molydopterin dinucleotide binding domain SHALO_2055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2056 PF12800 4Fe-4S binding domain SHALO_2056 PF13247 4Fe-4S dicluster domain SHALO_2057 PF04976 SHALO_2057 SHALO_2058 PF02613 Nitrate reductase delta subunit SHALO_2061 PF07603 SHALO_2061 SHALO_2062 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_2064 PF00762 Ferrochelatase SHALO_2065 PF00905 Penicillin binding protein transpeptidase domain SHALO_2065 PF03717 Penicillin-binding Protein dimerisation domain SHALO_2066 PF02049 SHALO_2066 SHALO_2067 PF00460 Flagella basal body rod protein SHALO_2067 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_2068 PF00460 Flagella basal body rod protein SHALO_2069 PF01098 SHALO_2069 SHALO_2070 PF03033 Glycosyltransferase family 28 N-terminal domain SHALO_2070 PF04101 Glycosyltransferase family 28 C-terminal domain SHALO_2071 PF00583 Acetyltransferase (GNAT) family SHALO_2074 PF13098 Thioredoxin-like domain SHALO_2075 PF00892 EamA-like transporter family SHALO_2084 PF13231 SHALO_2084 SHALO_2085 PF00117 Glutamine amidotransferase class-I SHALO_2086 PF07690 Major Facilitator Superfamily SHALO_2087 PF00501 AMP-binding enzyme SHALO_2087 PF01553 Acyltransferase SHALO_2088 PF12840 Helix-turn-helix domain SHALO_2090 PF04909 Amidohydrolase SHALO_2091 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SHALO_2091 PF03802 SHALO_2091 SHALO_2092 PF04223 Citrate lyase, alpha subunit (CitF) SHALO_2093 PF03328 HpcH/HpaI aldolase/citrate lyase family SHALO_2094 PF06857 SHALO_2094 SHALO_2095 PF08218 Citrate lyase ligase C-terminal domain SHALO_2095 PF13673 Acetyltransferase (GNAT) domain SHALO_2096 PF05145 SHALO_2096 SHALO_2097 PF03573 outer membrane porin, OprD family SHALO_2098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2098 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SHALO_2098 PF17203 SHALO_2098 SHALO_2099 PF00072 Response regulator receiver domain SHALO_2099 PF08279 HTH domain SHALO_2100 PF01970 SHALO_2100 SHALO_2101 PF07331 SHALO_2101 SHALO_2102 PF03401 Tripartite tricarboxylate transporter family receptor SHALO_2103 PF00072 Response regulator receiver domain SHALO_2103 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_2103 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2103 PF01627 Hpt domain SHALO_2103 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2104 PF00072 Response regulator receiver domain SHALO_2104 PF01966 HD domain SHALO_2105 PF07690 Major Facilitator Superfamily SHALO_2106 PF00156 Phosphoribosyl transferase domain SHALO_2107 PF00860 Permease family SHALO_2108 PF04055 Radical SAM superfamily SHALO_2109 PF03994 SHALO_2109 SHALO_2110 PF13599 Pentapeptide repeats (9 copies) SHALO_2111 PF00291 Pyridoxal-phosphate dependent enzyme SHALO_2113 PF01966 HD domain SHALO_2113 PF08335 GlnD PII-uridylyltransferase SHALO_2114 PF01380 SIS domain SHALO_2114 PF13522 Glutamine amidotransferase domain SHALO_2115 PF13613 SHALO_2115 SHALO_2116 PF13359 SHALO_2116 SHALO_2117 PF00990 GGDEF domain SHALO_2118 PF04055 Radical SAM superfamily SHALO_2118 PF13186 Iron-sulfur cluster-binding domain SHALO_2119 PF01230 HIT domain SHALO_2120 PF17033 SHALO_2120 SHALO_2120 PF17129 SHALO_2120 SHALO_2121 PF00563 EAL domain SHALO_2121 PF08668 HDOD domain SHALO_2122 PF10262 Rdx family SHALO_2123 PF00520 Ion transport protein SHALO_2123 PF02254 TrkA-N domain SHALO_2124 PF02254 TrkA-N domain SHALO_2125 PF03547 SHALO_2125 SHALO_2126 PF01253 Translation initiation factor SUI1 SHALO_2127 PF00005 ABC transporter SHALO_2127 PF12848 ABC transporter SHALO_2128 PF00563 EAL domain SHALO_2128 PF00990 GGDEF domain SHALO_2129 PF12838 4Fe-4S dicluster domain SHALO_2131 PF13359 SHALO_2131 SHALO_2132 PF13613 SHALO_2132 SHALO_2134 PF00146 NADH dehydrogenase SHALO_2135 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SHALO_2136 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains SHALO_2136 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SHALO_2137 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SHALO_2137 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SHALO_2137 PF00374 Nickel-dependent hydrogenase SHALO_2138 PF12838 4Fe-4S dicluster domain SHALO_2139 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SHALO_2140 PF07450 SHALO_2140 SHALO_2142 PF13641 Glycosyltransferase like family 2 SHALO_2143 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SHALO_2143 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SHALO_2144 PF02597 ThiS family SHALO_2145 PF02597 ThiS family SHALO_2146 PF00899 ThiF family SHALO_2147 PF00990 GGDEF domain SHALO_2150 PF14602 Hexapeptide repeat of succinyl-transferase SHALO_2150 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle SHALO_2150 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal SHALO_2151 PF01883 Domain of unknown function DUF59 SHALO_2151 PF10609 ParA/MinD ATPase like SHALO_2152 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SHALO_2152 PF02542 YgbB family SHALO_2153 PF00072 Response regulator receiver domain SHALO_2154 PF01747 ATP-sulfurylase SHALO_2154 PF14306 PUA-like domain SHALO_2155 PF07238 PilZ domain SHALO_2156 PF04608 Phosphatidylglycerophosphatase A SHALO_2157 PF04264 YceI-like domain SHALO_2158 PF01205 Uncharacterized protein family UPF0029 SHALO_2159 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SHALO_2159 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SHALO_2160 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2161 PF13531 Bacterial extracellular solute-binding protein SHALO_2162 PF00005 ABC transporter SHALO_2163 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2164 PF03459 TOBE domain SHALO_2165 PF13531 Bacterial extracellular solute-binding protein SHALO_2166 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2166 PF03459 TOBE domain SHALO_2167 PF00768 D-alanyl-D-alanine carboxypeptidase SHALO_2168 PF03807 NADP oxidoreductase coenzyme F420-dependent SHALO_2168 PF14748 Pyrroline-5-carboxylate reductase dimerisation SHALO_2169 PF02687 SHALO_2169 SHALO_2169 PF12704 MacB-like periplasmic core domain SHALO_2170 PF00005 ABC transporter SHALO_2171 PF16576 SHALO_2171 SHALO_2172 PF02321 Outer membrane efflux protein SHALO_2173 PF02582 SHALO_2173 SHALO_2174 PF11391 SHALO_2174 SHALO_2175 PF00924 Mechanosensitive ion channel SHALO_2175 PF05552 Conserved TM helix SHALO_2176 PF07883 Cupin domain SHALO_2178 PF03364 Polyketide cyclase / dehydrase and lipid transport SHALO_2179 PF08238 Sel1 repeat SHALO_2180 PF02311 AraC-like ligand binding domain SHALO_2180 PF12833 Helix-turn-helix domain SHALO_2181 PF01810 SHALO_2181 SHALO_2183 PF02460 SHALO_2183 SHALO_2183 PF03176 MMPL family SHALO_2184 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) SHALO_2187 PF05170 SHALO_2187 SHALO_2187 PF13502 SHALO_2187 SHALO_2188 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SHALO_2189 PF01029 NusB family SHALO_2190 PF00885 6,7-dimethyl-8-ribityllumazine synthase SHALO_2191 PF01184 SHALO_2191 SHALO_2192 PF03781 Sulfatase-modifying factor enzyme 1 SHALO_2192 PF08241 Methyltransferase domain SHALO_2192 PF12867 DinB superfamily SHALO_2193 PF00793 DAHP synthetase I family SHALO_2194 PF00892 EamA-like transporter family SHALO_2195 PF00924 Mechanosensitive ion channel SHALO_2196 PF01926 50S ribosome-binding GTPase SHALO_2196 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SHALO_2197 PF01202 Shikimate kinase SHALO_2198 PF00579 tRNA synthetases class I (W and Y) SHALO_2199 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SHALO_2199 PF02403 Seryl-tRNA synthetase N-terminal domain SHALO_2200 PF13181 Tetratricopeptide repeat SHALO_2200 PF13432 Tetratricopeptide repeat SHALO_2201 PF00682 HMGL-like SHALO_2201 PF08502 LeuA allosteric (dimerisation) domain SHALO_2202 PF01066 CDP-alcohol phosphatidyltransferase SHALO_2203 PF02666 SHALO_2203 SHALO_2204 PF00004 ATPase family associated with various cellular activities (AAA) SHALO_2204 PF01434 Peptidase family M41 SHALO_2204 PF06480 FtsH Extracellular SHALO_2205 PF06325 Ribosomal protein L11 methyltransferase (PrmA) SHALO_2206 PF00072 Response regulator receiver domain SHALO_2207 PF00977 Histidine biosynthesis protein SHALO_2208 PF00117 Glutamine amidotransferase class-I SHALO_2210 PF02516 Oligosaccharyl transferase STT3 subunit SHALO_2211 PF02719 Polysaccharide biosynthesis protein SHALO_2212 PF00953 Glycosyl transferase family 4 SHALO_2214 PF01370 NAD dependent epimerase/dehydratase family SHALO_2215 PF14602 Hexapeptide repeat of succinyl-transferase SHALO_2217 PF00132 Bacterial transferase hexapeptide (six repeats) SHALO_2217 PF14602 Hexapeptide repeat of succinyl-transferase SHALO_2218 PF00535 Glycosyl transferase family 2 SHALO_2220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_2221 PF01370 NAD dependent epimerase/dehydratase family SHALO_2222 PF01370 NAD dependent epimerase/dehydratase family SHALO_2223 PF00682 HMGL-like SHALO_2223 PF07836 DmpG-like communication domain SHALO_2224 PF01118 Semialdehyde dehydrogenase, NAD binding domain SHALO_2224 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SHALO_2225 PF00205 Thiamine pyrophosphate enzyme, central domain SHALO_2225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_2225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHALO_2226 PF16363 SHALO_2226 SHALO_2227 PF00483 Nucleotidyl transferase SHALO_2228 PF01370 NAD dependent epimerase/dehydratase family SHALO_2229 PF01909 Nucleotidyltransferase domain SHALO_2230 PF16363 SHALO_2230 SHALO_2231 PF00483 Nucleotidyl transferase SHALO_2231 PF01050 Mannose-6-phosphate isomerase SHALO_2232 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SHALO_2232 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SHALO_2232 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SHALO_2233 PF01068 ATP dependent DNA ligase domain SHALO_2233 PF14743 DNA ligase OB-like domain SHALO_2234 PF16363 SHALO_2234 SHALO_2235 PF00483 Nucleotidyl transferase SHALO_2236 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SHALO_2236 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SHALO_2236 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SHALO_2236 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SHALO_2237 PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB SHALO_2238 PF03279 SHALO_2238 SHALO_2239 PF03279 SHALO_2239 SHALO_2240 PF06258 SHALO_2240 SHALO_2241 PF00534 Glycosyl transferases group 1 SHALO_2241 PF13439 Glycosyltransferase Family 4 SHALO_2242 PF04932 SHALO_2242 SHALO_2243 PF00534 Glycosyl transferases group 1 SHALO_2244 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SHALO_2245 PF00852 Glycosyltransferase family 10 (fucosyltransferase) SHALO_2246 PF13580 SIS domain SHALO_2247 PF00294 pfkB family carbohydrate kinase SHALO_2247 PF01467 Cytidylyltransferase SHALO_2248 PF13242 HAD-hyrolase-like SHALO_2249 PF13181 Tetratricopeptide repeat SHALO_2250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_2251 PF03597 SHALO_2251 SHALO_2252 PF00122 E1-E2 ATPase SHALO_2252 PF00403 Heavy-metal-associated domain SHALO_2252 PF00702 haloacid dehalogenase-like hydrolase SHALO_2252 PF12156 SHALO_2252 SHALO_2253 PF00563 EAL domain SHALO_2253 PF00990 GGDEF domain SHALO_2254 PF00892 EamA-like transporter family SHALO_2255 PF01966 HD domain SHALO_2256 PF08534 Redoxin SHALO_2258 PF02578 Multi-copper polyphenol oxidoreductase laccase SHALO_2259 PF00677 Lumazine binding domain SHALO_2260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2260 PF14827 Sensory domain of two-component sensor kinase SHALO_2261 PF02626 Allophanate hydrolase subunit 2 SHALO_2262 PF02682 Allophanate hydrolase subunit 1 SHALO_2263 PF03746 LamB/YcsF family SHALO_2264 PF06808 SHALO_2264 SHALO_2265 PF04290 SHALO_2265 SHALO_2266 PF03480 Bacterial extracellular solute-binding protein, family 7 SHALO_2267 PF00072 Response regulator receiver domain SHALO_2267 PF00486 Transcriptional regulatory protein, C terminal SHALO_2268 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2268 PF08269 Cache domain SHALO_2269 PF01134 Glucose inhibited division protein A SHALO_2269 PF13932 GidA associated domain 3 SHALO_2270 PF00355 Rieske [2Fe-2S] domain SHALO_2271 PF00032 Cytochrome b(C-terminal)/b6/petD SHALO_2271 PF00033 Cytochrome b(N-terminal)/b6/petB SHALO_2272 PF00034 Cytochrome c SHALO_2274 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SHALO_2275 PF00109 Beta-ketoacyl synthase, N-terminal domain SHALO_2275 PF02801 Beta-ketoacyl synthase, C-terminal domain SHALO_2276 PF00550 Phosphopantetheine attachment site SHALO_2277 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_2278 PF01676 Metalloenzyme superfamily SHALO_2278 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SHALO_2279 PF00953 Glycosyl transferase family 4 SHALO_2280 PF08245 Mur ligase middle domain SHALO_2282 PF02397 SHALO_2282 SHALO_2283 PF01695 IstB-like ATP binding protein SHALO_2284 PF00665 Integrase core domain SHALO_2284 PF13384 Homeodomain-like domain SHALO_2285 PF01061 SHALO_2285 SHALO_2286 PF16363 SHALO_2286 SHALO_2287 PF04321 RmlD substrate binding domain SHALO_2288 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SHALO_2289 PF00483 Nucleotidyl transferase SHALO_2290 PF16363 SHALO_2290 SHALO_2291 PF00384 Molybdopterin oxidoreductase SHALO_2291 PF01568 Molydopterin dinucleotide binding domain SHALO_2292 PF03916 SHALO_2292 SHALO_2293 PF12800 4Fe-4S binding domain SHALO_2293 PF13247 4Fe-4S dicluster domain SHALO_2294 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2295 PF00072 Response regulator receiver domain SHALO_2295 PF00486 Transcriptional regulatory protein, C terminal SHALO_2298 PF00563 EAL domain SHALO_2298 PF00990 GGDEF domain SHALO_2300 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_2301 PF03649 SHALO_2301 SHALO_2302 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain SHALO_2302 PF02785 Biotin carboxylase C-terminal domain SHALO_2302 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_2305 PF01384 SHALO_2305 SHALO_2306 PF00270 DEAD/DEAH box helicase SHALO_2306 PF00271 Helicase conserved C-terminal domain SHALO_2307 PF02639 SHALO_2307 SHALO_2308 PF01609 Transposase DDE domain SHALO_2310 PF00892 EamA-like transporter family SHALO_2311 PF02222 ATP-grasp domain SHALO_2312 PF00654 Voltage gated chloride channel SHALO_2313 PF04463 SHALO_2313 SHALO_2314 PF00465 Iron-containing alcohol dehydrogenase SHALO_2315 PF01841 Transglutaminase-like superfamily SHALO_2316 PF04237 YjbR SHALO_2317 PF03352 Methyladenine glycosylase SHALO_2319 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SHALO_2320 PF00691 OmpA family SHALO_2320 PF13505 Outer membrane protein beta-barrel domain SHALO_2321 PF00924 Mechanosensitive ion channel SHALO_2322 PF13852 SHALO_2322 SHALO_2323 PF13419 Haloacid dehalogenase-like hydrolase SHALO_2324 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SHALO_2324 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SHALO_2324 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SHALO_2324 PF10371 Domain of unknown function SHALO_2324 PF13484 SHALO_2324 SHALO_2324 PF17147 SHALO_2324 SHALO_2325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SHALO_2325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SHALO_2329 PF02690 SHALO_2329 SHALO_2330 PF02664 S-Ribosylhomocysteinase (LuxS) SHALO_2331 PF00375 Sodium:dicarboxylate symporter family SHALO_2332 PF01243 Pyridoxamine 5'-phosphate oxidase SHALO_2333 PF00581 Rhodanese-like domain SHALO_2334 PF01814 Hemerythrin HHE cation binding domain SHALO_2335 PF00529 HlyD family secretion protein SHALO_2335 PF16576 SHALO_2335 SHALO_2336 PF00873 AcrB/AcrD/AcrF family SHALO_2337 PF02321 Outer membrane efflux protein SHALO_2338 PF07690 Major Facilitator Superfamily SHALO_2339 PF07690 Major Facilitator Superfamily SHALO_2340 PF12833 Helix-turn-helix domain SHALO_2341 PF00999 Sodium/hydrogen exchanger family SHALO_2342 PF02562 PhoH-like protein SHALO_2342 PF13638 PIN domain SHALO_2343 PF00149 Calcineurin-like phosphoesterase SHALO_2344 PF01734 Patatin-like phospholipase SHALO_2345 PF08761 dUTPase SHALO_2346 PF01242 6-pyruvoyl tetrahydropterin synthase SHALO_2347 PF04055 Radical SAM superfamily SHALO_2347 PF13353 4Fe-4S single cluster domain SHALO_2348 PF06508 Queuosine biosynthesis protein QueC SHALO_2349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2349 PF05228 SHALO_2349 SHALO_2350 PF02525 Flavodoxin-like fold SHALO_2351 PF01638 HxlR-like helix-turn-helix SHALO_2353 PF04120 SHALO_2353 SHALO_2354 PF03061 Thioesterase superfamily SHALO_2355 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2356 PF00072 Response regulator receiver domain SHALO_2356 PF00486 Transcriptional regulatory protein, C terminal SHALO_2357 PF01895 PhoU domain SHALO_2358 PF01553 Acyltransferase SHALO_2358 PF13444 Acetyltransferase (GNAT) domain SHALO_2359 PF13173 AAA domain SHALO_2359 PF13635 SHALO_2359 SHALO_2360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2361 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SHALO_2362 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2363 PF12849 PBP superfamily domain SHALO_2364 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2364 PF12501 SHALO_2364 SHALO_2365 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2365 PF11812 SHALO_2365 SHALO_2366 PF00005 ABC transporter SHALO_2367 PF03692 SHALO_2367 SHALO_2367 PF07277 SHALO_2367 SHALO_2368 PF00486 Transcriptional regulatory protein, C terminal SHALO_2369 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2369 PF00672 HAMP domain SHALO_2369 PF02743 Cache domain SHALO_2370 PF05538 SHALO_2370 SHALO_2371 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_2372 PF14537 Cytochrome c3 SHALO_2373 PF00890 FAD binding domain SHALO_2374 PF01609 Transposase DDE domain SHALO_2376 PF09907 SHALO_2376 SHALO_2377 PF00380 Ribosomal protein S9/S16 SHALO_2378 PF00572 Ribosomal protein L13 SHALO_2379 PF00580 UvrD/REP helicase N-terminal domain SHALO_2379 PF12705 PD-(D/E)XK nuclease superfamily SHALO_2379 PF13361 UvrD-like helicase C-terminal domain SHALO_2380 PF12705 PD-(D/E)XK nuclease superfamily SHALO_2381 PF13115 SHALO_2381 SHALO_2383 PF13179 SHALO_2383 SHALO_2384 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_2384 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SHALO_2385 PF05545 SHALO_2385 SHALO_2386 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO SHALO_2387 PF00115 Cytochrome C and Quinol oxidase polypeptide I SHALO_2388 PF00072 Response regulator receiver domain SHALO_2388 PF00486 Transcriptional regulatory protein, C terminal SHALO_2389 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2389 PF08447 PAS fold SHALO_2390 PF13386 SHALO_2390 SHALO_2391 PF00117 Glutamine amidotransferase class-I SHALO_2391 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SHALO_2392 PF04368 SHALO_2392 SHALO_2394 PF02050 Flagellar FliJ protein SHALO_2395 PF00709 Adenylosuccinate synthetase SHALO_2396 PF13393 Histidyl-tRNA synthetase SHALO_2397 PF00266 Aminotransferase class-V SHALO_2398 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2398 PF02743 Cache domain SHALO_2399 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2399 PF00672 HAMP domain SHALO_2399 PF02743 Cache domain SHALO_2400 PF13419 Haloacid dehalogenase-like hydrolase SHALO_2401 PF00456 Transketolase, thiamine diphosphate binding domain SHALO_2401 PF02779 Transketolase, pyrimidine binding domain SHALO_2402 PF00348 Polyprenyl synthetase SHALO_2403 PF00595 PDZ domain (Also known as DHR or GLGF) SHALO_2403 PF13180 PDZ domain SHALO_2404 PF02575 YbaB/EbfC DNA-binding family SHALO_2405 PF02261 Aspartate decarboxylase SHALO_2406 PF02875 Mur ligase family, glutamate ligase domain SHALO_2406 PF08245 Mur ligase middle domain SHALO_2408 PF01106 NifU-like domain SHALO_2409 PF01196 Ribosomal protein L17 SHALO_2410 PF01000 RNA polymerase Rpb3/RpoA insert domain SHALO_2410 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SHALO_2410 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SHALO_2411 PF00163 Ribosomal protein S4/S9 N-terminal domain SHALO_2411 PF01479 S4 domain SHALO_2412 PF00411 Ribosomal protein S11 SHALO_2413 PF00416 Ribosomal protein S13/S18 SHALO_2414 PF00444 Ribosomal protein L36 SHALO_2415 PF01176 Translation initiation factor 1A / IF-1 SHALO_2416 PF00557 Metallopeptidase family M24 SHALO_2417 PF00344 SecY translocase SHALO_2418 PF00828 Ribosomal protein L18e/L15 SHALO_2419 PF00333 Ribosomal protein S5, N-terminal domain SHALO_2419 PF03719 Ribosomal protein S5, C-terminal domain SHALO_2420 PF00861 Ribosomal L18p/L5e family SHALO_2421 PF00347 Ribosomal protein L6 SHALO_2422 PF00410 Ribosomal protein S8 SHALO_2423 PF00253 Ribosomal protein S14p/S29e SHALO_2424 PF00281 Ribosomal protein L5 SHALO_2424 PF00673 ribosomal L5P family C-terminus SHALO_2425 PF00467 KOW motif SHALO_2425 PF17136 SHALO_2425 SHALO_2426 PF00238 Ribosomal protein L14p/L23e SHALO_2427 PF00366 Ribosomal protein S17 SHALO_2428 PF00831 Ribosomal L29 protein SHALO_2429 PF00252 Ribosomal protein L16p/L10e SHALO_2430 PF00189 Ribosomal protein S3, C-terminal domain SHALO_2430 PF07650 KH domain SHALO_2431 PF00237 Ribosomal protein L22p/L17e SHALO_2432 PF00203 Ribosomal protein S19 SHALO_2433 PF00181 Ribosomal Proteins L2, RNA binding domain SHALO_2433 PF03947 Ribosomal Proteins L2, C-terminal domain SHALO_2434 PF00276 Ribosomal protein L23 SHALO_2435 PF00573 Ribosomal protein L4/L1 family SHALO_2436 PF00297 Ribosomal protein L3 SHALO_2437 PF00338 Ribosomal protein S10p/S20e SHALO_2439 PF07228 Stage II sporulation protein E (SpoIIE) SHALO_2439 PF13581 Histidine kinase-like ATPase domain SHALO_2440 PF01351 Ribonuclease HII SHALO_2441 PF03239 SHALO_2441 SHALO_2442 PF10634 Fe2+ transport protein SHALO_2443 PF04945 YHS domain SHALO_2443 PF10080 SHALO_2443 SHALO_2444 PF02687 SHALO_2444 SHALO_2444 PF12704 MacB-like periplasmic core domain SHALO_2445 PF02687 SHALO_2445 SHALO_2446 PF00005 ABC transporter SHALO_2447 PF00578 AhpC/TSA family SHALO_2448 PF00578 AhpC/TSA family SHALO_2449 PF04023 FeoA domain SHALO_2450 PF02421 Ferrous iron transport protein B SHALO_2450 PF07664 SHALO_2450 SHALO_2450 PF07670 Nucleoside recognition SHALO_2451 PF01264 Chorismate synthase SHALO_2452 PF00035 Double-stranded RNA binding motif SHALO_2452 PF14622 Ribonuclease-III-like SHALO_2453 PF00075 RNase H SHALO_2454 PF13176 Tetratricopeptide repeat SHALO_2455 PF01807 CHC2 zinc finger SHALO_2455 PF08275 DNA primase catalytic core, N-terminal domain SHALO_2455 PF10410 DnaB-helicase binding domain of primase SHALO_2455 PF13662 Toprim domain SHALO_2455 PF16730 SHALO_2455 SHALO_2456 PF00764 Arginosuccinate synthase SHALO_2457 PF00072 Response regulator receiver domain SHALO_2459 PF00989 PAS fold SHALO_2459 PF00990 GGDEF domain SHALO_2460 PF00072 Response regulator receiver domain SHALO_2461 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2461 PF13426 PAS domain SHALO_2462 PF00072 Response regulator receiver domain SHALO_2462 PF01339 CheB methylesterase SHALO_2463 PF03975 CheD chemotactic sensory transduction SHALO_2464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2465 PF01739 CheR methyltransferase, SAM binding domain SHALO_2465 PF03705 CheR methyltransferase, all-alpha domain SHALO_2466 PF01584 CheW-like domain SHALO_2466 PF01627 Hpt domain SHALO_2466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2466 PF02895 Signal transducing histidine kinase, homodimeric domain SHALO_2468 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2469 PF01584 CheW-like domain SHALO_2470 PF00072 Response regulator receiver domain SHALO_2471 PF00226 DnaJ domain SHALO_2474 PF02635 DsrE/DsrF-like family SHALO_2475 PF02872 5'-nucleotidase, C-terminal domain SHALO_2478 PF08770 Sulphur oxidation protein SoxZ SHALO_2479 PF13501 Sulfur oxidation protein SoxY SHALO_2480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_2481 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SHALO_2482 PF00174 Oxidoreductase molybdopterin binding domain SHALO_2482 PF03404 Mo-co oxidoreductase dimerisation domain SHALO_2483 PF05448 Acetyl xylan esterase (AXE1) SHALO_2484 PF00805 Pentapeptide repeats (8 copies) SHALO_2485 PF13899 Thioredoxin-like SHALO_2486 PF02683 SHALO_2486 SHALO_2487 PF01966 HD domain SHALO_2487 PF13286 Phosphohydrolase-associated domain SHALO_2488 PF01841 Transglutaminase-like superfamily SHALO_2489 PF03994 SHALO_2489 SHALO_2491 PF13310 SHALO_2491 SHALO_2492 PF13310 SHALO_2492 SHALO_2494 PF04245 SHALO_2494 SHALO_2495 PF04266 ASCH domain SHALO_2498 PF04012 SHALO_2498 SHALO_2499 PF07290 SHALO_2499 SHALO_2500 PF01145 SPFH domain / Band 7 family SHALO_2500 PF15975 SHALO_2500 SHALO_2501 PF13189 Cytidylate kinase-like family SHALO_2504 PF00122 E1-E2 ATPase SHALO_2504 PF00702 haloacid dehalogenase-like hydrolase SHALO_2510 PF01475 Ferric uptake regulator family SHALO_2511 PF13609 Gram-negative porin SHALO_2513 PF03929 SHALO_2513 SHALO_2515 PF00593 TonB dependent receptor SHALO_2515 PF07715 TonB-dependent Receptor Plug Domain SHALO_2516 PF00072 Response regulator receiver domain SHALO_2516 PF00486 Transcriptional regulatory protein, C terminal SHALO_2517 PF00672 HAMP domain SHALO_2517 PF07568 SHALO_2517 SHALO_2517 PF08269 Cache domain SHALO_2519 PF02421 Ferrous iron transport protein B SHALO_2519 PF07664 SHALO_2519 SHALO_2519 PF07670 Nucleoside recognition SHALO_2520 PF04023 FeoA domain SHALO_2522 PF00593 TonB dependent receptor SHALO_2522 PF07660 Secretin and TonB N terminus short domain SHALO_2522 PF07715 TonB-dependent Receptor Plug Domain SHALO_2523 PF04773 FecR protein SHALO_2523 PF16220 SHALO_2523 SHALO_2523 PF16344 SHALO_2523 SHALO_2524 PF04542 Sigma-70 region 2 SHALO_2524 PF08281 Sigma-70, region 4 SHALO_2525 PF00756 Putative esterase SHALO_2525 PF11806 Domain of unknown function (DUF3327) SHALO_2526 PF00593 TonB dependent receptor SHALO_2526 PF07715 TonB-dependent Receptor Plug Domain SHALO_2527 PF03544 Gram-negative bacterial TonB protein C-terminal SHALO_2528 PF02472 Biopolymer transport protein ExbD/TolR SHALO_2529 PF01618 SHALO_2529 SHALO_2530 PF01545 Cation efflux family SHALO_2531 PF02659 SHALO_2531 SHALO_2532 PF07690 Major Facilitator Superfamily SHALO_2533 PF07690 Major Facilitator Superfamily SHALO_2534 PF00005 ABC transporter SHALO_2534 PF00664 ABC transporter transmembrane region SHALO_2535 PF00005 ABC transporter SHALO_2535 PF00664 ABC transporter transmembrane region SHALO_2536 PF00593 TonB dependent receptor SHALO_2536 PF07715 TonB-dependent Receptor Plug Domain SHALO_2537 PF00593 TonB dependent receptor SHALO_2537 PF07715 TonB-dependent Receptor Plug Domain SHALO_2538 PF12833 Helix-turn-helix domain SHALO_2539 PF12833 Helix-turn-helix domain SHALO_2540 PF00990 GGDEF domain SHALO_2542 PF00563 EAL domain SHALO_2543 PF10087 SHALO_2543 SHALO_2544 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_2545 PF00005 ABC transporter SHALO_2546 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2547 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2548 PF13242 HAD-hyrolase-like SHALO_2548 PF13344 Haloacid dehalogenase-like hydrolase SHALO_2549 PF02694 SHALO_2549 SHALO_2550 PF06226 SHALO_2550 SHALO_2551 PF03824 SHALO_2551 SHALO_2552 PF03824 SHALO_2552 SHALO_2553 PF06226 SHALO_2553 SHALO_2554 PF00258 Flavodoxin SHALO_2556 PF01810 SHALO_2556 SHALO_2557 PF01370 NAD dependent epimerase/dehydratase family SHALO_2557 PF08338 Domain of unknown function (DUF1731) SHALO_2560 PF00005 ABC transporter SHALO_2561 PF02687 SHALO_2561 SHALO_2563 PF01810 SHALO_2563 SHALO_2564 PF03960 ArsC family SHALO_2565 PF00990 GGDEF domain SHALO_2565 PF08448 PAS fold SHALO_2566 PF00892 EamA-like transporter family SHALO_2567 PF00072 Response regulator receiver domain SHALO_2567 PF00486 Transcriptional regulatory protein, C terminal SHALO_2568 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2568 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2569 PF00884 Sulfatase SHALO_2569 PF08019 SHALO_2569 SHALO_2570 PF03167 Uracil DNA glycosylase superfamily SHALO_2571 PF00563 EAL domain SHALO_2573 PF05016 Plasmid stabilisation system protein SHALO_2574 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2574 PF08448 PAS fold SHALO_2574 PF13426 PAS domain SHALO_2575 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2575 PF08448 PAS fold SHALO_2575 PF13426 PAS domain SHALO_2576 PF00072 Response regulator receiver domain SHALO_2577 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2577 PF13682 Chemoreceptor zinc-binding domain SHALO_2578 PF02579 Dinitrogenase iron-molybdenum cofactor SHALO_2579 PF02001 SHALO_2579 SHALO_2580 PF02673 SHALO_2580 SHALO_2581 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SHALO_2581 PF13378 Enolase C-terminal domain-like SHALO_2582 PF03180 NLPA lipoprotein SHALO_2583 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2584 PF00005 ABC transporter SHALO_2585 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SHALO_2586 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SHALO_2587 PF01869 BadF/BadG/BcrA/BcrD ATPase family SHALO_2590 PF15738 SHALO_2590 SHALO_2591 PF13437 HlyD family secretion protein SHALO_2592 PF00005 ABC transporter SHALO_2592 PF00664 ABC transporter transmembrane region SHALO_2592 PF03412 Peptidase C39 family SHALO_2593 PF00353 Hemolysin-type calcium-binding repeat (2 copies) SHALO_2595 PF00515 Tetratricopeptide repeat SHALO_2595 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SHALO_2595 PF13181 Tetratricopeptide repeat SHALO_2595 PF13432 Tetratricopeptide repeat SHALO_2596 PF02321 Outer membrane efflux protein SHALO_2598 PF01618 SHALO_2598 SHALO_2599 PF01497 Periplasmic binding protein SHALO_2600 PF13649 Methyltransferase domain SHALO_2601 PF00593 TonB dependent receptor SHALO_2601 PF07715 TonB-dependent Receptor Plug Domain SHALO_2602 PF00206 Lyase SHALO_2602 PF10415 Fumarase C C-terminus SHALO_2603 PF00206 Lyase SHALO_2603 PF10415 Fumarase C C-terminus SHALO_2604 PF03605 SHALO_2604 SHALO_2605 PF00710 Asparaginase SHALO_2606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2606 PF04392 ABC transporter substrate binding protein SHALO_2607 PF00072 Response regulator receiver domain SHALO_2607 PF00486 Transcriptional regulatory protein, C terminal SHALO_2608 PF01464 Transglycosylase SLT domain SHALO_2609 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_2610 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2613 PF02661 Fic/DOC family SHALO_2613 PF08279 HTH domain SHALO_2613 PF13784 Fic/DOC family N-terminal SHALO_2616 PF00005 ABC transporter SHALO_2617 PF02687 SHALO_2617 SHALO_2619 PF05573 NosL SHALO_2620 PF08238 Sel1 repeat SHALO_2621 PF01578 SHALO_2621 SHALO_2621 PF05140 SHALO_2621 SHALO_2622 PF03916 SHALO_2622 SHALO_2623 PF13247 4Fe-4S dicluster domain SHALO_2624 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_2624 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SHALO_2626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2626 PF11845 SHALO_2626 SHALO_2627 PF00072 Response regulator receiver domain SHALO_2627 PF00486 Transcriptional regulatory protein, C terminal SHALO_2628 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2630 PF01638 HxlR-like helix-turn-helix SHALO_2631 PF02525 Flavodoxin-like fold SHALO_2632 PF00817 impB/mucB/samB family SHALO_2633 PF09335 SHALO_2633 SHALO_2635 PF00593 TonB dependent receptor SHALO_2635 PF07715 TonB-dependent Receptor Plug Domain SHALO_2636 PF03544 Gram-negative bacterial TonB protein C-terminal SHALO_2637 PF02472 Biopolymer transport protein ExbD/TolR SHALO_2638 PF01618 SHALO_2638 SHALO_2639 PF00586 AIR synthase related protein, N-terminal domain SHALO_2639 PF02769 AIR synthase related protein, C-terminal domain SHALO_2640 PF01206 Sulfurtransferase TusA SHALO_2640 PF02635 DsrE/DsrF-like family SHALO_2642 PF00497 Bacterial extracellular solute-binding proteins, family 3 SHALO_2644 PF00990 GGDEF domain SHALO_2644 PF08447 PAS fold SHALO_2644 PF13426 PAS domain SHALO_2645 PF01047 MarR family SHALO_2646 PF07690 Major Facilitator Superfamily SHALO_2649 PF01594 SHALO_2649 SHALO_2650 PF00005 ABC transporter SHALO_2651 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2652 PF12849 PBP superfamily domain SHALO_2653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2654 PF02634 FdhD/NarQ family SHALO_2655 PF01292 Prokaryotic cytochrome b561 SHALO_2656 PF13247 4Fe-4S dicluster domain SHALO_2659 PF02613 Nitrate reductase delta subunit SHALO_2660 PF00593 TonB dependent receptor SHALO_2660 PF07715 TonB-dependent Receptor Plug Domain SHALO_2661 PF00005 ABC transporter SHALO_2662 PF01032 FecCD transport family SHALO_2663 PF01497 Periplasmic binding protein SHALO_2664 PF00296 Luciferase-like monooxygenase SHALO_2665 PF01152 Bacterial-like globin SHALO_2666 PF03544 Gram-negative bacterial TonB protein C-terminal SHALO_2667 PF02472 Biopolymer transport protein ExbD/TolR SHALO_2668 PF01618 SHALO_2668 SHALO_2669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2669 PF03459 TOBE domain SHALO_2670 PF01152 Bacterial-like globin SHALO_2671 PF00593 TonB dependent receptor SHALO_2671 PF07715 TonB-dependent Receptor Plug Domain SHALO_2672 PF01497 Periplasmic binding protein SHALO_2673 PF01497 Periplasmic binding protein SHALO_2673 PF04055 Radical SAM superfamily SHALO_2674 PF13649 Methyltransferase domain SHALO_2675 PF03459 TOBE domain SHALO_2676 PF02537 SHALO_2676 SHALO_2677 PF02641 Uncharacterized ACR, COG1993 SHALO_2678 PF02311 AraC-like ligand binding domain SHALO_2678 PF12833 Helix-turn-helix domain SHALO_2680 PF04264 YceI-like domain SHALO_2681 PF02311 AraC-like ligand binding domain SHALO_2681 PF12833 Helix-turn-helix domain SHALO_2682 PF01292 Prokaryotic cytochrome b561 SHALO_2683 PF13247 4Fe-4S dicluster domain SHALO_2686 PF02613 Nitrate reductase delta subunit SHALO_2687 PF12838 4Fe-4S dicluster domain SHALO_2687 PF13237 4Fe-4S dicluster domain SHALO_2688 PF13458 Periplasmic binding protein SHALO_2689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2690 PF00072 Response regulator receiver domain SHALO_2690 PF05732 SHALO_2690 SHALO_2691 PF03841 L-seryl-tRNA selenium transferase SHALO_2692 PF00009 Elongation factor Tu GTP binding domain SHALO_2692 PF09107 Elongation factor SelB, winged helix SHALO_2693 PF02754 SHALO_2693 SHALO_2694 PF13085 2Fe-2S iron-sulfur cluster binding domain SHALO_2694 PF13183 4Fe-4S dicluster domain SHALO_2695 PF00890 FAD binding domain SHALO_2695 PF02910 Fumarate reductase flavoprotein C-term SHALO_2697 PF01047 MarR family SHALO_2698 PF04264 YceI-like domain SHALO_2699 PF02678 Pirin SHALO_2700 PF09360 Iron-binding zinc finger CDGSH type SHALO_2701 PF03008 SHALO_2701 SHALO_2702 PF13328 HD domain SHALO_2704 PF13098 Thioredoxin-like domain SHALO_2705 PF08447 PAS fold SHALO_2705 PF08448 PAS fold SHALO_2706 PF00072 Response regulator receiver domain SHALO_2706 PF00486 Transcriptional regulatory protein, C terminal SHALO_2708 PF01965 DJ-1/PfpI family SHALO_2709 PF00891 O-methyltransferase SHALO_2711 PF00535 Glycosyl transferase family 2 SHALO_2712 PF03279 SHALO_2712 SHALO_2713 PF00221 Aromatic amino acid lyase SHALO_2714 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_2718 PF00501 AMP-binding enzyme SHALO_2721 PF00561 alpha/beta hydrolase fold SHALO_2723 PF13723 SHALO_2723 SHALO_2724 PF00109 Beta-ketoacyl synthase, N-terminal domain SHALO_2724 PF02801 Beta-ketoacyl synthase, C-terminal domain SHALO_2725 PF00550 Phosphopantetheine attachment site SHALO_2726 PF00270 DEAD/DEAH box helicase SHALO_2726 PF00271 Helicase conserved C-terminal domain SHALO_2728 PF01810 SHALO_2728 SHALO_2729 PF01810 SHALO_2729 SHALO_2731 PF00403 Heavy-metal-associated domain SHALO_2732 PF02411 SHALO_2732 SHALO_2733 PF01841 Transglutaminase-like superfamily SHALO_2735 PF02086 D12 class N6 adenine-specific DNA methyltransferase SHALO_2736 PF00072 Response regulator receiver domain SHALO_2738 PF01425 Amidase SHALO_2739 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain SHALO_2739 PF00364 Biotin-requiring enzyme SHALO_2739 PF02626 Allophanate hydrolase subunit 2 SHALO_2739 PF02682 Allophanate hydrolase subunit 1 SHALO_2739 PF02785 Biotin carboxylase C-terminal domain SHALO_2739 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_2740 PF09347 Domain of unknown function (DUF1989) SHALO_2741 PF09347 Domain of unknown function (DUF1989) SHALO_2742 PF00005 ABC transporter SHALO_2743 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2744 PF13379 NMT1-like family SHALO_2745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2746 PF00072 Response regulator receiver domain SHALO_2746 PF00486 Transcriptional regulatory protein, C terminal SHALO_2747 PF13202 EF hand SHALO_2747 PF13499 EF-hand domain pair SHALO_2748 PF00593 TonB dependent receptor SHALO_2748 PF07715 TonB-dependent Receptor Plug Domain SHALO_2749 PF04773 FecR protein SHALO_2749 PF16220 SHALO_2749 SHALO_2749 PF16344 SHALO_2749 SHALO_2750 PF04542 Sigma-70 region 2 SHALO_2750 PF08281 Sigma-70, region 4 SHALO_2751 PF00072 Response regulator receiver domain SHALO_2751 PF00486 Transcriptional regulatory protein, C terminal SHALO_2752 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2752 PF02702 Osmosensitive K+ channel His kinase sensor domain SHALO_2752 PF13493 Domain of unknown function (DUF4118) SHALO_2753 PF02669 SHALO_2753 SHALO_2754 PF00122 E1-E2 ATPase SHALO_2754 PF00702 haloacid dehalogenase-like hydrolase SHALO_2755 PF03814 SHALO_2755 SHALO_2756 PF13561 Enoyl-(Acyl carrier protein) reductase SHALO_2757 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SHALO_2758 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2758 PF08269 Cache domain SHALO_2759 PF00106 short chain dehydrogenase SHALO_2761 PF03435 Saccharopine dehydrogenase SHALO_2761 PF16653 SHALO_2761 SHALO_2762 PF01725 Ham1 family SHALO_2763 PF03562 MltA specific insert domain SHALO_2763 PF06725 3D domain SHALO_2765 PF07690 Major Facilitator Superfamily SHALO_2766 PF09335 SHALO_2766 SHALO_2768 PF03734 L,D-transpeptidase catalytic domain SHALO_2769 PF14255 SHALO_2769 SHALO_2770 PF00994 Probable molybdopterin binding domain SHALO_2770 PF03453 MoeA N-terminal region (domain I and II) SHALO_2771 PF02391 MoaE protein SHALO_2772 PF02597 ThiS family SHALO_2773 PF01106 NifU-like domain SHALO_2773 PF01592 NifU-like N terminal domain SHALO_2773 PF04324 BFD-like [2Fe-2S] binding domain SHALO_2774 PF00266 Aminotransferase class-V SHALO_2775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SHALO_2776 PF01227 GTP cyclohydrolase I SHALO_2777 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SHALO_2777 PF05697 Bacterial trigger factor protein (TF) SHALO_2777 PF05698 Bacterial trigger factor protein (TF) C-terminus SHALO_2778 PF00574 Clp protease SHALO_2779 PF00990 GGDEF domain SHALO_2780 PF01327 Polypeptide deformylase SHALO_2781 PF01078 Magnesium chelatase, subunit ChlI SHALO_2781 PF13335 SHALO_2781 SHALO_2781 PF13541 Subunit ChlI of Mg-chelatase SHALO_2782 PF01256 Carbohydrate kinase SHALO_2782 PF03853 YjeF-related protein N-terminus SHALO_2783 PF00551 Formyl transferase SHALO_2784 PF05690 Thiazole biosynthesis protein ThiG SHALO_2790 PF03573 outer membrane porin, OprD family SHALO_2791 PF01527 Transposase SHALO_2792 PF00037 4Fe-4S binding domain SHALO_2792 PF12838 4Fe-4S dicluster domain SHALO_2793 PF00037 4Fe-4S binding domain SHALO_2793 PF12801 SHALO_2793 SHALO_2794 PF12838 4Fe-4S dicluster domain SHALO_2795 PF02613 Nitrate reductase delta subunit SHALO_2796 PF04976 SHALO_2796 SHALO_2797 PF12800 4Fe-4S binding domain SHALO_2797 PF13247 4Fe-4S dicluster domain SHALO_2798 PF00384 Molybdopterin oxidoreductase SHALO_2798 PF01568 Molydopterin dinucleotide binding domain SHALO_2798 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2800 PF01527 Transposase SHALO_2800 PF13276 SHALO_2800 SHALO_2801 PF01527 Transposase SHALO_2802 PF00072 Response regulator receiver domain SHALO_2802 PF00486 Transcriptional regulatory protein, C terminal SHALO_2803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2804 PF05014 Nucleoside 2-deoxyribosyltransferase SHALO_2805 PF00171 Aldehyde dehydrogenase family SHALO_2806 PF05610 SHALO_2806 SHALO_2808 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_2808 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_2810 PF09851 SHALO_2810 SHALO_2811 PF02583 Metal-sensitive transcriptional repressor SHALO_2812 PF03824 SHALO_2812 SHALO_2813 PF00575 S1 RNA binding domain SHALO_2813 PF09371 Tex-like protein N-terminal domain SHALO_2813 PF12836 Helix-hairpin-helix motif SHALO_2813 PF16921 SHALO_2813 SHALO_2816 PF00881 Nitroreductase family SHALO_2817 PF03992 Antibiotic biosynthesis monooxygenase SHALO_2818 PF00939 Sodium:sulfate symporter transmembrane region SHALO_2819 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SHALO_2819 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SHALO_2820 PF01925 SHALO_2820 SHALO_2821 PF12698 ABC-2 family transporter protein SHALO_2822 PF12698 ABC-2 family transporter protein SHALO_2823 PF00005 ABC transporter SHALO_2824 PF13437 HlyD family secretion protein SHALO_2825 PF00440 Bacterial regulatory proteins, tetR family SHALO_2825 PF09209 Domain of unknown function (DUF1956) SHALO_2826 PF04607 Region found in RelA / SpoT proteins SHALO_2828 PF05538 SHALO_2828 SHALO_2829 PF03264 NapC/NirT cytochrome c family, N-terminal region SHALO_2830 PF14537 Cytochrome c3 SHALO_2831 PF00890 FAD binding domain SHALO_2832 PF03942 SHALO_2832 SHALO_2833 PF01810 SHALO_2833 SHALO_2834 PF00881 Nitroreductase family SHALO_2835 PF03733 SHALO_2835 SHALO_2836 PF13673 Acetyltransferase (GNAT) domain SHALO_2837 PF03358 NADPH-dependent FMN reductase SHALO_2839 PF00873 AcrB/AcrD/AcrF family SHALO_2840 PF16576 SHALO_2840 SHALO_2841 PF02321 Outer membrane efflux protein SHALO_2842 PF13115 SHALO_2842 SHALO_2843 PF07731 Multicopper oxidase SHALO_2844 PF00072 Response regulator receiver domain SHALO_2844 PF00486 Transcriptional regulatory protein, C terminal SHALO_2845 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2846 PF00005 ABC transporter SHALO_2847 PF00528 Binding-protein-dependent transport system inner membrane component SHALO_2848 PF13343 Bacterial extracellular solute-binding protein SHALO_2849 PF00080 Copper/zinc superoxide dismutase (SODC) SHALO_2850 PF09834 SHALO_2850 SHALO_2851 PF01507 Phosphoadenosine phosphosulfate reductase family SHALO_2852 PF01507 Phosphoadenosine phosphosulfate reductase family SHALO_2853 PF00009 Elongation factor Tu GTP binding domain SHALO_2854 PF02597 ThiS family SHALO_2855 PF00899 ThiF family SHALO_2856 PF14464 Prokaryotic homologs of the JAB domain SHALO_2857 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SHALO_2857 PF01206 Sulfurtransferase TusA SHALO_2857 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SHALO_2858 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SHALO_2858 PF13241 Putative NAD(P)-binding SHALO_2858 PF14824 Sirohaem biosynthesis protein central SHALO_2859 PF01053 Cys/Met metabolism PLP-dependent enzyme SHALO_2861 PF03054 tRNA methyl transferase SHALO_2863 PF09459 Ethylbenzene dehydrogenase SHALO_2864 PF00072 Response regulator receiver domain SHALO_2864 PF00486 Transcriptional regulatory protein, C terminal SHALO_2865 PF00512 His Kinase A (phospho-acceptor) domain SHALO_2865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2866 PF09719 Putative redox-active protein (C_GCAxxG_C_C) SHALO_2867 PF00990 GGDEF domain SHALO_2868 PF13192 Thioredoxin domain SHALO_2869 PF00581 Rhodanese-like domain SHALO_2870 PF03773 SHALO_2870 SHALO_2871 PF00085 Thioredoxin SHALO_2872 PF02683 SHALO_2872 SHALO_2873 PF01451 Low molecular weight phosphotyrosine protein phosphatase SHALO_2874 PF02040 SHALO_2874 SHALO_2875 PF01451 Low molecular weight phosphotyrosine protein phosphatase SHALO_2876 PF00355 Rieske [2Fe-2S] domain SHALO_2877 PF00384 Molybdopterin oxidoreductase SHALO_2877 PF01568 Molydopterin dinucleotide binding domain SHALO_2879 PF17131 SHALO_2879 SHALO_2880 PF02687 SHALO_2880 SHALO_2880 PF12704 MacB-like periplasmic core domain SHALO_2881 PF00005 ABC transporter SHALO_2882 PF00072 Response regulator receiver domain SHALO_2882 PF00158 Sigma-54 interaction domain SHALO_2883 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SHALO_2884 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein SHALO_2885 PF03916 SHALO_2885 SHALO_2886 PF00384 Molybdopterin oxidoreductase SHALO_2886 PF01568 Molydopterin dinucleotide binding domain SHALO_2886 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2887 PF13247 4Fe-4S dicluster domain SHALO_2888 PF12849 PBP superfamily domain SHALO_2889 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SHALO_2890 PF06723 MreB/Mbl protein SHALO_2891 PF03741 SHALO_2891 SHALO_2892 PF02621 Menaquinone biosynthesis SHALO_2893 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SHALO_2893 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SHALO_2894 PF14681 Uracil phosphoribosyltransferase SHALO_2895 PF00390 Malic enzyme, N-terminal domain SHALO_2895 PF03949 Malic enzyme, NAD binding domain SHALO_2896 PF00749 tRNA synthetases class I (E and Q), catalytic domain SHALO_2898 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain SHALO_2898 PF02785 Biotin carboxylase C-terminal domain SHALO_2898 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SHALO_2899 PF00364 Biotin-requiring enzyme SHALO_2900 PF00692 dUTPase SHALO_2901 PF00583 Acetyltransferase (GNAT) family SHALO_2903 PF10672 S-adenosylmethionine-dependent methyltransferase SHALO_2904 PF00561 alpha/beta hydrolase fold SHALO_2905 PF13649 Methyltransferase domain SHALO_2906 PF00669 Bacterial flagellin N-terminal helical region SHALO_2907 PF02719 Polysaccharide biosynthesis protein SHALO_2908 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SHALO_2909 PF02348 Cytidylyltransferase SHALO_2911 PF13302 Acetyltransferase (GNAT) domain SHALO_2912 PF03102 NeuB family SHALO_2912 PF08666 SAF domain SHALO_2913 PF01370 NAD dependent epimerase/dehydratase family SHALO_2914 PF04007 SHALO_2914 SHALO_2915 PF13578 Methyltransferase domain SHALO_2916 PF00733 Asparagine synthase SHALO_2916 PF13537 Glutamine amidotransferase domain SHALO_2917 PF00534 Glycosyl transferases group 1 SHALO_2918 PF08241 Methyltransferase domain SHALO_2919 PF05050 Methyltransferase FkbM domain SHALO_2920 PF08241 Methyltransferase domain SHALO_2921 PF16363 SHALO_2921 SHALO_2922 PF04055 Radical SAM superfamily SHALO_2922 PF13186 Iron-sulfur cluster-binding domain SHALO_2922 PF13394 4Fe-4S single cluster domain SHALO_2923 PF04055 Radical SAM superfamily SHALO_2923 PF13186 Iron-sulfur cluster-binding domain SHALO_2927 PF01973 SHALO_2927 SHALO_2928 PF00669 Bacterial flagellin N-terminal helical region SHALO_2928 PF00700 Bacterial flagellin C-terminal helical region SHALO_2928 PF07196 Flagellin hook IN motif SHALO_2929 PF01131 DNA topoisomerase SHALO_2929 PF01396 SHALO_2929 SHALO_2929 PF01751 Toprim domain SHALO_2930 PF04055 Radical SAM superfamily SHALO_2930 PF06968 Biotin and Thiamin Synthesis associated domain SHALO_2931 PF00285 Citrate synthase SHALO_2932 PF11741 AMIN domain SHALO_2934 PF00113 Enolase, C-terminal TIM barrel domain SHALO_2934 PF03952 Enolase, N-terminal domain SHALO_2935 PF00154 recA bacterial DNA recombination protein SHALO_2936 PF02621 Menaquinone biosynthesis SHALO_2937 PF01313 SHALO_2937 SHALO_2938 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SHALO_2939 PF00814 Glycoprotease family SHALO_2940 PF02557 D-alanyl-D-alanine carboxypeptidase SHALO_2941 PF00563 EAL domain SHALO_2941 PF00990 GGDEF domain SHALO_2941 PF08269 Cache domain SHALO_2941 PF13426 PAS domain SHALO_2943 PF13649 Methyltransferase domain SHALO_2945 PF00149 Calcineurin-like phosphoesterase SHALO_2946 PF01235 SHALO_2946 SHALO_2947 PF00860 Permease family SHALO_2948 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SHALO_2948 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal SHALO_2948 PF13288 DXP reductoisomerase C-terminal domain SHALO_2949 PF01148 Cytidylyltransferase family SHALO_2951 PF05670 SHALO_2951 SHALO_2951 PF05833 Fibronectin-binding protein A N-terminus (FbpA) SHALO_2952 PF02595 Glycerate kinase family SHALO_2953 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SHALO_2953 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SHALO_2954 PF00583 Acetyltransferase (GNAT) family SHALO_2955 PF06094 AIG2-like family SHALO_2956 PF12796 Ankyrin repeats (3 copies) SHALO_2957 PF00199 Catalase SHALO_2957 PF06628 Catalase-related immune-responsive SHALO_2958 PF13545 Crp-like helix-turn-helix domain SHALO_2959 PF11127 Protein of unknown function (DUF2892) SHALO_2960 PF00330 Aconitase family (aconitate hydratase) SHALO_2961 PF12804 MobA-like NTP transferase domain SHALO_2962 PF00563 EAL domain SHALO_2962 PF00990 GGDEF domain SHALO_2963 PF05573 NosL SHALO_2964 PF07876 Stress responsive A/B Barrel Domain SHALO_2965 PF00892 EamA-like transporter family SHALO_2966 PF02253 Phospholipase A1 SHALO_2967 PF00076 RNA recognition motif SHALO_2968 PF01967 MoaC family SHALO_2969 PF04359 Protein of unknown function (DUF493) SHALO_2971 PF14358 SHALO_2971 SHALO_2972 PF07467 Beta-lactamase inhibitor (BLIP) SHALO_2973 PF00037 4Fe-4S binding domain SHALO_2973 PF13187 4Fe-4S dicluster domain SHALO_2974 PF02613 Nitrate reductase delta subunit SHALO_2976 PF00034 Cytochrome c SHALO_2976 PF09459 Ethylbenzene dehydrogenase SHALO_2977 PF13247 4Fe-4S dicluster domain SHALO_2978 PF00384 Molybdopterin oxidoreductase SHALO_2978 PF01568 Molydopterin dinucleotide binding domain SHALO_2979 PF00581 Rhodanese-like domain SHALO_2981 PF10609 ParA/MinD ATPase like SHALO_2982 PF11853 SHALO_2982 SHALO_2990 PF01027 Inhibitor of apoptosis-promoting Bax1 SHALO_2991 PF00581 Rhodanese-like domain SHALO_2992 PF03916 SHALO_2992 SHALO_2993 PF13247 4Fe-4S dicluster domain SHALO_2994 PF00384 Molybdopterin oxidoreductase SHALO_2994 PF01568 Molydopterin dinucleotide binding domain SHALO_2994 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SHALO_2996 PF03466 LysR substrate binding domain SHALO_2998 PF00581 Rhodanese-like domain SHALO_2999 PF03916 SHALO_2999 SHALO_3000 PF13247 4Fe-4S dicluster domain SHALO_3001 PF00384 Molybdopterin oxidoreductase SHALO_3001 PF01568 Molydopterin dinucleotide binding domain SHALO_3001 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SHALO_3002 PF13649 Methyltransferase domain SHALO_3003 PF00211 Adenylate and Guanylate cyclase catalytic domain SHALO_3003 PF05226 SHALO_3003 SHALO_3004 PF01590 GAF domain SHALO_3004 PF01966 HD domain SHALO_3004 PF12706 Beta-lactamase superfamily domain SHALO_3004 PF13487 HD domain SHALO_3005 PF03840 Preprotein translocase SecG subunit SHALO_3006 PF01522 Polysaccharide deacetylase SHALO_3007 PF01765 Ribosome recycling factor SHALO_3008 PF00156 Phosphoribosyl transferase domain SHALO_3009 PF06271 SHALO_3009 SHALO_3010 PF12832 MFS_1 like family SHALO_3011 PF03748 SHALO_3011 SHALO_3012 PF11335 SHALO_3012 SHALO_3013 PF04011 LemA family SHALO_3014 PF00009 Elongation factor Tu GTP binding domain SHALO_3014 PF00679 Elongation factor G C-terminus SHALO_3014 PF03144 Elongation factor Tu domain 2 SHALO_3015 PF02120 Flagellar hook-length control protein FliK SHALO_3016 PF03963 SHALO_3016 SHALO_3016 PF13860 FlgD Ig-like domain SHALO_3017 PF00460 Flagella basal body rod protein SHALO_3017 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_3018 PF00460 Flagella basal body rod protein SHALO_3018 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SHALO_3018 PF07196 Flagellin hook IN motif SHALO_3018 PF07559 Flagellar basal body protein FlaE SHALO_3019 PF13711 SHALO_3019 SHALO_3020 PF10387 Protein of unknown function (DUF2442) SHALO_3021 PF02511 Thymidylate synthase complementing protein SHALO_3022 PF02075 Crossover junction endodeoxyribonuclease RuvC