SHALO_0001 SM00382 ATPases associated with a variety of cellular activities SHALO_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain SHALO_0002 SM00480 DNA polymerase III beta subunit SHALO_0003 SM00387 Histidine kinase-like ATPases SHALO_0003 SM00433 TopoisomeraseII SHALO_0004 SM00052 Putative diguanylate phosphodiesterase SHALO_0004 SM00267 diguanylate cyclase SHALO_0008 SM00986 Uracil DNA glycosylase superfamily SHALO_0008 SM00987 UreE urease accessory protein, C-terminal domain SHALO_0009 SM00478 endonuclease III SHALO_0010 SM00382 ATPases associated with a variety of cellular activities SHALO_0016 SM00345 helix_turn_helix gluconate operon transcriptional repressor SHALO_0016 SM00895 SHALO_0016 SHALO_0020 SM00671 Sel1-like repeats. SHALO_0022 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_0022 SM00267 diguanylate cyclase SHALO_0025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0029 SM00387 Histidine kinase-like ATPases SHALO_0030 SM00448 cheY-homologous receiver domain SHALO_0030 SM00862 Transcriptional regulatory protein, C terminal SHALO_0032 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0032 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_0040 SM00342 helix_turn_helix, arabinose operon control protein SHALO_0040 SM00871 Bacterial transcription activator, effector binding domain SHALO_0047 SM00342 helix_turn_helix, arabinose operon control protein SHALO_0052 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0060 SM00028 Tetratricopeptide repeats SHALO_0087 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0094 SM00028 Tetratricopeptide repeats SHALO_0099 SM00998 Adenylosuccinate lyase C-terminus SHALO_0105 SM00650 Ribosomal RNA adenine dimethylases SHALO_0106 SM00849 Metallo-beta-lactamase superfamily SHALO_0107 SM00116 Domain in cystathionine beta-synthase and other proteins. SHALO_0108 SM00363 S4 RNA-binding domain SHALO_0109 SM00382 ATPases associated with a variety of cellular activities SHALO_0116 SM00047 Lysozyme subfamily 2 SHALO_0117 SM00937 SHALO_0117 SHALO_0124 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_0129 SM00857 Resolvase, N terminal domain SHALO_0142 SM00387 Histidine kinase-like ATPases SHALO_0142 SM00388 His Kinase A (phosphoacceptor) domain SHALO_0143 SM00448 cheY-homologous receiver domain SHALO_0143 SM00862 Transcriptional regulatory protein, C terminal SHALO_0147 SM00382 ATPases associated with a variety of cellular activities SHALO_0151 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0151 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_0151 SM01049 SHALO_0151 SHALO_0153 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_0157 SM00387 Histidine kinase-like ATPases SHALO_0158 SM00448 cheY-homologous receiver domain SHALO_0160 SM00938 Nitrogen regulatory protein P-II SHALO_0164 SM00448 cheY-homologous receiver domain SHALO_0164 SM00862 Transcriptional regulatory protein, C terminal SHALO_0165 SM00387 Histidine kinase-like ATPases SHALO_0168 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_0168 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SHALO_0169 SM00382 ATPases associated with a variety of cellular activities SHALO_0174 SM00382 ATPases associated with a variety of cellular activities SHALO_0178 SM00518 AP endonuclease family 2 SHALO_0181 SM00382 ATPases associated with a variety of cellular activities SHALO_0188 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_0202 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0204 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0205 SM00852 Probable molybdopterin binding domain SHALO_0210 SM00967 RNA 2'-O ribose methyltransferase substrate binding SHALO_0220 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0224 SM00244 prohibitin homologues SHALO_0232 SM00382 ATPases associated with a variety of cellular activities SHALO_0232 SM00994 ClpX C4-type zinc finger SHALO_0232 SM01086 C-terminal, D2-small domain, of ClpB protein SHALO_0235 SM00851 MGS-like domain SHALO_0235 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SHALO_0244 SM00859 Semialdehyde dehydrogenase, NAD binding domain SHALO_0246 SM00260 Two component signalling adaptor domain SHALO_0246 SM00448 cheY-homologous receiver domain SHALO_0247 SM00073 Histidine Phosphotransfer domain SHALO_0247 SM00260 Two component signalling adaptor domain SHALO_0247 SM00387 Histidine kinase-like ATPases SHALO_0247 SM00448 cheY-homologous receiver domain SHALO_0247 SM01231 SHALO_0247 SHALO_0248 SM00260 Two component signalling adaptor domain SHALO_0252 SM00382 ATPases associated with a variety of cellular activities SHALO_0257 SM00830 Chorismate mutase type II SHALO_0265 SM00861 Transketolase, pyrimidine binding domain SHALO_0268 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0268 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_0270 SM00562 SHALO_0270 SHALO_0279 SM00387 Histidine kinase-like ATPases SHALO_0279 SM00388 His Kinase A (phosphoacceptor) domain SHALO_0280 SM00448 cheY-homologous receiver domain SHALO_0280 SM00862 Transcriptional regulatory protein, C terminal SHALO_0281 SM00905 Dihydroneopterin aldolase SHALO_0282 SM01207 SHALO_0282 SHALO_0298 SM00052 Putative diguanylate phosphodiesterase SHALO_0298 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_0298 SM00267 diguanylate cyclase SHALO_0299 SM00357 Cold shock protein domain SHALO_0300 SM00387 Histidine kinase-like ATPases SHALO_0300 SM00388 His Kinase A (phosphoacceptor) domain SHALO_0301 SM00448 cheY-homologous receiver domain SHALO_0301 SM00862 Transcriptional regulatory protein, C terminal SHALO_0305 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0307 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0310 SM00052 Putative diguanylate phosphodiesterase SHALO_0310 SM00267 diguanylate cyclase SHALO_0310 SM00897 FIST N domain SHALO_0310 SM01204 SHALO_0310 SHALO_0311 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0314 SM00448 cheY-homologous receiver domain SHALO_0314 SM00862 Transcriptional regulatory protein, C terminal SHALO_0315 SM00387 Histidine kinase-like ATPases SHALO_0317 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0319 SM01131 SHALO_0319 SHALO_0325 SM00267 diguanylate cyclase SHALO_0326 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_0326 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SHALO_0326 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_0326 SM00091 PAS domain SHALO_0326 SM00267 diguanylate cyclase SHALO_0329 SM00342 helix_turn_helix, arabinose operon control protein SHALO_0340 SM00382 ATPases associated with a variety of cellular activities SHALO_0346 SM00382 ATPases associated with a variety of cellular activities SHALO_0350 SM00382 ATPases associated with a variety of cellular activities SHALO_0355 SM00710 Parallel beta-helix repeats SHALO_0358 SM00091 PAS domain SHALO_0358 SM00387 Histidine kinase-like ATPases SHALO_0359 SM00448 cheY-homologous receiver domain SHALO_0359 SM00862 Transcriptional regulatory protein, C terminal SHALO_0378 SM00382 ATPases associated with a variety of cellular activities SHALO_0378 SM00962 SRP54-type protein, GTPase domain SHALO_0392 SM01400 SHALO_0392 SHALO_0396 SM01321 SHALO_0396 SHALO_0397 SM00434 DNA Topoisomerase IV SHALO_0400 SM00382 ATPases associated with a variety of cellular activities SHALO_0400 SM00448 cheY-homologous receiver domain SHALO_0401 SM00859 Semialdehyde dehydrogenase, NAD binding domain SHALO_0409 SM00387 Histidine kinase-like ATPases SHALO_0413 SM00530 Helix-turn-helix XRE-family like proteins SHALO_0420 SM00382 ATPases associated with a variety of cellular activities SHALO_0422 SM00857 Resolvase, N terminal domain SHALO_0423 SM00530 Helix-turn-helix XRE-family like proteins SHALO_0430 SM00507 HNH nucleases SHALO_0445 SM00052 Putative diguanylate phosphodiesterase SHALO_0445 SM00267 diguanylate cyclase SHALO_0462 SM00382 ATPases associated with a variety of cellular activities SHALO_0463 SM00382 ATPases associated with a variety of cellular activities SHALO_0474 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SHALO_0474 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SHALO_0475 SM00649 Ribosomal protein L11/L12 SHALO_0480 SM00663 RNA polymerase I subunit A N-terminus SHALO_0483 SM00838 Elongation factor G C-terminus SHALO_0483 SM00889 Elongation factor G, domain IV SHALO_0484 SM00382 ATPases associated with a variety of cellular activities SHALO_0484 SM00930 SHALO_0484 SHALO_0488 SM00344 helix_turn_helix ASNC type SHALO_0495 SM00448 cheY-homologous receiver domain SHALO_0495 SM00862 Transcriptional regulatory protein, C terminal SHALO_0497 SM00387 Histidine kinase-like ATPases SHALO_0498 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0501 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SHALO_0510 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SHALO_0517 SM01005 Alanine racemase, C-terminal domain SHALO_0518 SM00267 diguanylate cyclase SHALO_0526 SM01004 Delta-aminolevulinic acid dehydratase SHALO_0529 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0536 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_0536 SM00267 diguanylate cyclase SHALO_0539 SM00100 Cyclic nucleotide-monophosphate binding domain SHALO_0539 SM00419 helix_turn_helix, cAMP Regulatory protein SHALO_0550 SM00382 ATPases associated with a variety of cellular activities SHALO_0558 SM00382 ATPases associated with a variety of cellular activities SHALO_0561 SM00072 Guanylate kinase homologues. SHALO_0563 SM00836 DALR anticodon binding domain SHALO_0563 SM01016 Arginyl tRNA synthetase N terminal dom SHALO_0564 SM00477 DNA/RNA non-specific endonuclease SHALO_0564 SM00892 DNA/RNA non-specific endonuclease SHALO_0565 SM00052 Putative diguanylate phosphodiesterase SHALO_0565 SM00267 diguanylate cyclase SHALO_0571 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SHALO_0579 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0585 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0587 SM00937 SHALO_0587 SHALO_0592 SM00382 ATPases associated with a variety of cellular activities SHALO_0593 SM00357 Cold shock protein domain SHALO_0593 SM00382 ATPases associated with a variety of cellular activities SHALO_0593 SM00959 Rho termination factor, N-terminal domain SHALO_0595 SM00052 Putative diguanylate phosphodiesterase SHALO_0595 SM00091 PAS domain SHALO_0595 SM00267 diguanylate cyclase SHALO_0607 SM00487 DEAD-like helicases superfamily SHALO_0607 SM00490 helicase superfamily c-terminal domain SHALO_0616 SM00387 Histidine kinase-like ATPases SHALO_0616 SM01049 SHALO_0616 SHALO_0617 SM00448 cheY-homologous receiver domain SHALO_0617 SM00862 Transcriptional regulatory protein, C terminal SHALO_0637 SM00382 ATPases associated with a variety of cellular activities SHALO_0638 SM00382 ATPases associated with a variety of cellular activities SHALO_0651 SM00116 Domain in cystathionine beta-synthase and other proteins. SHALO_0651 SM01240 SHALO_0651 SHALO_0659 SM00463 Small MutS-related domain SHALO_0659 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SHALO_0659 SM00534 ATPase domain of DNA mismatch repair MUTS family SHALO_0666 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SHALO_0666 SM00245 tail specific protease SHALO_0676 SM00470 ParB-like nuclease domain SHALO_0682 SM00382 ATPases associated with a variety of cellular activities SHALO_0689 SM00028 Tetratricopeptide repeats SHALO_0692 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SHALO_0725 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SHALO_0725 SM00474 3'-5' exonuclease SHALO_0725 SM00475 5'-3' exonuclease SHALO_0725 SM00482 DNA polymerase A domain SHALO_0728 SM00271 DnaJ molecular chaperone homology domain SHALO_0735 SM00448 cheY-homologous receiver domain SHALO_0735 SM00862 Transcriptional regulatory protein, C terminal SHALO_0736 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_0736 SM00387 Histidine kinase-like ATPases SHALO_0738 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_0738 SM00091 PAS domain SHALO_0738 SM00267 diguanylate cyclase SHALO_0749 SM00267 diguanylate cyclase SHALO_0750 SM00382 ATPases associated with a variety of cellular activities SHALO_0757 SM00448 cheY-homologous receiver domain SHALO_0758 SM00387 Histidine kinase-like ATPases SHALO_0758 SM00388 His Kinase A (phosphoacceptor) domain SHALO_0758 SM00448 cheY-homologous receiver domain SHALO_0759 SM00671 Sel1-like repeats. SHALO_0761 SM00465 GIY-YIG type nucleases (URI domain) SHALO_0768 SM01209 SHALO_0768 SHALO_0768 SM01210 SHALO_0768 SHALO_0771 SM00316 Ribosomal protein S1-like RNA-binding domain SHALO_0771 SM00322 K homology RNA-binding domain SHALO_0787 SM00091 PAS domain SHALO_0787 SM00387 Histidine kinase-like ATPases SHALO_0788 SM00448 cheY-homologous receiver domain SHALO_0788 SM00862 Transcriptional regulatory protein, C terminal SHALO_0799 SM00874 tRNA synthetase B5 domain SHALO_0799 SM00896 Ferredoxin-fold anticodon binding domain SHALO_0802 SM00316 Ribosomal protein S1-like RNA-binding domain SHALO_0811 SM00841 Elongation factor P, C-terminal SHALO_0811 SM01185 SHALO_0811 SHALO_0813 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0814 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SHALO_0814 SM00534 ATPase domain of DNA mismatch repair MUTS family SHALO_0819 SM00869 Autotransporter beta-domain SHALO_0820 SM00267 diguanylate cyclase SHALO_0825 SM00052 Putative diguanylate phosphodiesterase SHALO_0825 SM00267 diguanylate cyclase SHALO_0832 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0832 SM01049 SHALO_0832 SHALO_0834 SM00481 DNA polymerase alpha chain like domain SHALO_0836 SM00387 Histidine kinase-like ATPases SHALO_0836 SM00388 His Kinase A (phosphoacceptor) domain SHALO_0843 SM00363 S4 RNA-binding domain SHALO_0844 SM00060 Fibronectin type 3 domain SHALO_0846 SM00382 ATPases associated with a variety of cellular activities SHALO_0850 SM01409 SHALO_0850 SHALO_0851 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_0851 SM00954 Region found in RelA / SpoT proteins SHALO_0852 SM00363 S4 RNA-binding domain SHALO_0854 SM00646 SHALO_0854 SHALO_0855 SM00852 Probable molybdopterin binding domain SHALO_0858 SM00267 diguanylate cyclase SHALO_0861 SM00382 ATPases associated with a variety of cellular activities SHALO_0863 SM00267 diguanylate cyclase SHALO_0863 SM00448 cheY-homologous receiver domain SHALO_0865 SM00257 Lysin motif SHALO_0886 SM00845 GatB domain SHALO_0889 SM00448 cheY-homologous receiver domain SHALO_0889 SM00862 Transcriptional regulatory protein, C terminal SHALO_0891 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_0891 SM00387 Histidine kinase-like ATPases SHALO_0894 SM00448 cheY-homologous receiver domain SHALO_0894 SM00862 Transcriptional regulatory protein, C terminal SHALO_0902 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0904 SM00100 Cyclic nucleotide-monophosphate binding domain SHALO_0904 SM00419 helix_turn_helix, cAMP Regulatory protein SHALO_0913 SM00448 cheY-homologous receiver domain SHALO_0913 SM00862 Transcriptional regulatory protein, C terminal SHALO_0917 SM00857 Resolvase, N terminal domain SHALO_0920 SM00028 Tetratricopeptide repeats SHALO_0923 SM00450 Rhodanese Homology Domain SHALO_0927 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_0930 SM00342 helix_turn_helix, arabinose operon control protein SHALO_0933 SM00342 helix_turn_helix, arabinose operon control protein SHALO_0935 SM00347 helix_turn_helix multiple antibiotic resistance protein SHALO_0937 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_0949 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0954 SM00320 WD40 repeats SHALO_0956 SM00091 PAS domain SHALO_0961 SM00965 Secretin and TonB N terminus short domain SHALO_0964 SM00450 Rhodanese Homology Domain SHALO_0966 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_0969 SM00448 cheY-homologous receiver domain SHALO_0969 SM00862 Transcriptional regulatory protein, C terminal SHALO_0971 SM00387 Histidine kinase-like ATPases SHALO_0976 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0978 SM00052 Putative diguanylate phosphodiesterase SHALO_0978 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_0978 SM00091 PAS domain SHALO_0978 SM00448 cheY-homologous receiver domain SHALO_0980 SM00487 DEAD-like helicases superfamily SHALO_0980 SM00490 helicase superfamily c-terminal domain SHALO_0984 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0988 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_0988 SM00091 PAS domain SHALO_0988 SM00448 cheY-homologous receiver domain SHALO_0988 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_0989 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_0990 SM00530 Helix-turn-helix XRE-family like proteins SHALO_0992 SM00387 Histidine kinase-like ATPases SHALO_0993 SM00421 helix_turn_helix, Lux Regulon SHALO_0993 SM00448 cheY-homologous receiver domain SHALO_0994 SM00849 Metallo-beta-lactamase superfamily SHALO_0996 SM00347 helix_turn_helix multiple antibiotic resistance protein SHALO_1005 SM00883 Chaperonin 10 Kd subunit SHALO_1016 SM00382 ATPases associated with a variety of cellular activities SHALO_1030 SM00530 Helix-turn-helix XRE-family like proteins SHALO_1033 SM00052 Putative diguanylate phosphodiesterase SHALO_1033 SM00267 diguanylate cyclase SHALO_1034 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1035 SM00448 cheY-homologous receiver domain SHALO_1035 SM00862 Transcriptional regulatory protein, C terminal SHALO_1036 SM00387 Histidine kinase-like ATPases SHALO_1039 SM00052 Putative diguanylate phosphodiesterase SHALO_1039 SM00267 diguanylate cyclase SHALO_1040 SM00382 ATPases associated with a variety of cellular activities SHALO_1042 SM00421 helix_turn_helix, Lux Regulon SHALO_1043 SM00112 Cadherin repeats. SHALO_1045 SM00460 Transglutaminase/protease-like homologues SHALO_1047 SM00460 Transglutaminase/protease-like homologues SHALO_1049 SM00530 Helix-turn-helix XRE-family like proteins SHALO_1053 SM00460 Transglutaminase/protease-like homologues SHALO_1062 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SHALO_1064 SM00974 SHALO_1064 SHALO_1066 SM00342 helix_turn_helix, arabinose operon control protein SHALO_1067 SM00342 helix_turn_helix, arabinose operon control protein SHALO_1070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1071 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1071 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1084 SM00100 Cyclic nucleotide-monophosphate binding domain SHALO_1084 SM00116 Domain in cystathionine beta-synthase and other proteins. SHALO_1085 SM00479 SHALO_1085 SHALO_1093 SM00138 Methyltransferase, chemotaxis proteins SHALO_1110 SM00487 DEAD-like helicases superfamily SHALO_1110 SM00490 helicase superfamily c-terminal domain SHALO_1115 SM00237 Domains in Na-Ca exchangers and integrin-beta4 SHALO_1118 SM00382 ATPases associated with a variety of cellular activities SHALO_1118 SM00464 Found in ATP-dependent protease La (LON) SHALO_1123 SM00955 SHALO_1123 SHALO_1135 SM00732 Likely ribonuclease with RNase H fold. SHALO_1142 SM00382 ATPases associated with a variety of cellular activities SHALO_1143 SM00382 ATPases associated with a variety of cellular activities SHALO_1143 SM00962 SRP54-type protein, GTPase domain SHALO_1146 SM00322 K homology RNA-binding domain SHALO_1146 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1147 SM00382 ATPases associated with a variety of cellular activities SHALO_1154 SM00091 PAS domain SHALO_1154 SM00448 cheY-homologous receiver domain SHALO_1155 SM00448 cheY-homologous receiver domain SHALO_1155 SM00862 Transcriptional regulatory protein, C terminal SHALO_1156 SM00052 Putative diguanylate phosphodiesterase SHALO_1156 SM00267 diguanylate cyclase SHALO_1156 SM00448 cheY-homologous receiver domain SHALO_1157 SM00387 Histidine kinase-like ATPases SHALO_1158 SM00387 Histidine kinase-like ATPases SHALO_1159 SM00897 FIST N domain SHALO_1159 SM01204 SHALO_1159 SHALO_1165 SM00342 helix_turn_helix, arabinose operon control protein SHALO_1173 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1173 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1175 SM00867 YceI-like domain SHALO_1178 SM00382 ATPases associated with a variety of cellular activities SHALO_1180 SM00479 SHALO_1180 SHALO_1184 SM00530 Helix-turn-helix XRE-family like proteins SHALO_1190 SM00986 Uracil DNA glycosylase superfamily SHALO_1190 SM00987 UreE urease accessory protein, C-terminal domain SHALO_1191 SM00364 Leucine-rich repeats, bacterial type SHALO_1191 SM00369 Leucine-rich repeats, typical (most populated) subfamily SHALO_1194 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_1195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SHALO_1195 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1196 SM00448 cheY-homologous receiver domain SHALO_1196 SM00862 Transcriptional regulatory protein, C terminal SHALO_1197 SM00052 Putative diguanylate phosphodiesterase SHALO_1197 SM00267 diguanylate cyclase SHALO_1197 SM00448 cheY-homologous receiver domain SHALO_1198 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_1198 SM00091 PAS domain SHALO_1198 SM00387 Histidine kinase-like ATPases SHALO_1198 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1199 SM00448 cheY-homologous receiver domain SHALO_1200 SM00849 Metallo-beta-lactamase superfamily SHALO_1209 SM00260 Two component signalling adaptor domain SHALO_1229 SM00052 Putative diguanylate phosphodiesterase SHALO_1229 SM00267 diguanylate cyclase SHALO_1233 SM00880 SHALO_1233 SHALO_1247 SM00267 diguanylate cyclase SHALO_1248 SM00267 diguanylate cyclase SHALO_1249 SM00345 helix_turn_helix gluconate operon transcriptional repressor SHALO_1256 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1256 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1259 SM00387 Histidine kinase-like ATPases SHALO_1261 SM00448 cheY-homologous receiver domain SHALO_1261 SM00862 Transcriptional regulatory protein, C terminal SHALO_1270 SM00387 Histidine kinase-like ATPases SHALO_1271 SM00448 cheY-homologous receiver domain SHALO_1271 SM00862 Transcriptional regulatory protein, C terminal SHALO_1278 SM00448 cheY-homologous receiver domain SHALO_1278 SM00862 Transcriptional regulatory protein, C terminal SHALO_1279 SM00387 Histidine kinase-like ATPases SHALO_1284 SM00749 bacterial OsmY and nodulation domain SHALO_1285 SM00028 Tetratricopeptide repeats SHALO_1287 SM00448 cheY-homologous receiver domain SHALO_1287 SM00862 Transcriptional regulatory protein, C terminal SHALO_1288 SM00387 Histidine kinase-like ATPases SHALO_1288 SM00897 FIST N domain SHALO_1288 SM01204 SHALO_1288 SHALO_1290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1313 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SHALO_1313 SM00382 ATPases associated with a variety of cellular activities SHALO_1321 SM00052 Putative diguanylate phosphodiesterase SHALO_1321 SM00091 PAS domain SHALO_1321 SM00267 diguanylate cyclase SHALO_1321 SM01049 SHALO_1321 SHALO_1322 SM00530 Helix-turn-helix XRE-family like proteins SHALO_1323 SM00267 diguanylate cyclase SHALO_1330 SM00530 Helix-turn-helix XRE-family like proteins SHALO_1331 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1332 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1333 SM00849 Metallo-beta-lactamase superfamily SHALO_1335 SM00382 ATPases associated with a variety of cellular activities SHALO_1377 SM00845 GatB domain SHALO_1394 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_1422 SM00881 CoA binding domain SHALO_1432 SM00248 ankyrin repeats SHALO_1437 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SHALO_1440 SM01130 SHALO_1440 SHALO_1443 SM00382 ATPases associated with a variety of cellular activities SHALO_1447 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SHALO_1459 SM00382 ATPases associated with a variety of cellular activities SHALO_1461 SM00382 ATPases associated with a variety of cellular activities SHALO_1467 SM00382 ATPases associated with a variety of cellular activities SHALO_1467 SM01086 C-terminal, D2-small domain, of ClpB protein SHALO_1470 SM00450 Rhodanese Homology Domain SHALO_1472 SM00363 S4 RNA-binding domain SHALO_1475 SM00382 ATPases associated with a variety of cellular activities SHALO_1477 SM00271 DnaJ molecular chaperone homology domain SHALO_1484 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1486 SM00387 Histidine kinase-like ATPases SHALO_1487 SM00448 cheY-homologous receiver domain SHALO_1487 SM00862 Transcriptional regulatory protein, C terminal SHALO_1498 SM00387 Histidine kinase-like ATPases SHALO_1498 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1499 SM00448 cheY-homologous receiver domain SHALO_1499 SM00862 Transcriptional regulatory protein, C terminal SHALO_1502 SM00387 Histidine kinase-like ATPases SHALO_1503 SM00448 cheY-homologous receiver domain SHALO_1503 SM00862 Transcriptional regulatory protein, C terminal SHALO_1514 SM00855 Phosphoglycerate mutase family SHALO_1517 SM00382 ATPases associated with a variety of cellular activities SHALO_1529 SM00382 ATPases associated with a variety of cellular activities SHALO_1556 SM00411 bacterial (prokaryotic) histone like domain SHALO_1558 SM00382 ATPases associated with a variety of cellular activities SHALO_1558 SM00843 SHALO_1558 SHALO_1564 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_1567 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1567 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1568 SM00881 CoA binding domain SHALO_1571 SM00382 ATPases associated with a variety of cellular activities SHALO_1574 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_1576 SM00271 DnaJ molecular chaperone homology domain SHALO_1579 SM00382 ATPases associated with a variety of cellular activities SHALO_1588 SM00450 Rhodanese Homology Domain SHALO_1593 SM00382 ATPases associated with a variety of cellular activities SHALO_1608 SM00382 ATPases associated with a variety of cellular activities SHALO_1621 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1622 SM00852 Probable molybdopterin binding domain SHALO_1630 SM01001 AIR carboxylase SHALO_1637 SM00387 Histidine kinase-like ATPases SHALO_1638 SM00448 cheY-homologous receiver domain SHALO_1638 SM00862 Transcriptional regulatory protein, C terminal SHALO_1641 SM00855 Phosphoglycerate mutase family SHALO_1648 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_1649 SM00382 ATPases associated with a variety of cellular activities SHALO_1664 SM00052 Putative diguanylate phosphodiesterase SHALO_1664 SM00267 diguanylate cyclase SHALO_1665 SM00342 helix_turn_helix, arabinose operon control protein SHALO_1672 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1672 SM00897 FIST N domain SHALO_1672 SM01204 SHALO_1672 SHALO_1687 SM00267 diguanylate cyclase SHALO_1690 SM00852 Probable molybdopterin binding domain SHALO_1696 SM00478 endonuclease III SHALO_1702 SM00849 Metallo-beta-lactamase superfamily SHALO_1718 SM01387 SHALO_1718 SHALO_1724 SM00267 diguanylate cyclase SHALO_1725 SM00904 Riboflavin kinase SHALO_1726 SM00363 S4 RNA-binding domain SHALO_1727 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SHALO_1727 SM00292 breast cancer carboxy-terminal domain SHALO_1727 SM00532 Ligase N family SHALO_1735 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_1737 SM00422 helix_turn_helix, mercury resistance SHALO_1738 SM00271 DnaJ molecular chaperone homology domain SHALO_1739 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SHALO_1740 SM00448 cheY-homologous receiver domain SHALO_1740 SM00862 Transcriptional regulatory protein, C terminal SHALO_1741 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1741 SM00387 Histidine kinase-like ATPases SHALO_1741 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1744 SM00957 SecA DEAD-like domain SHALO_1744 SM00958 SecA preprotein cross-linking domain SHALO_1746 SM00052 Putative diguanylate phosphodiesterase SHALO_1746 SM00267 diguanylate cyclase SHALO_1749 SM01245 SHALO_1749 SHALO_1751 SM01234 SHALO_1751 SHALO_1760 SM00382 ATPases associated with a variety of cellular activities SHALO_1760 SM01086 C-terminal, D2-small domain, of ClpB protein SHALO_1761 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SHALO_1761 SM00245 tail specific protease SHALO_1764 SM01211 SHALO_1764 SHALO_1766 SM00563 Phosphate acyltransferases SHALO_1767 SM00387 Histidine kinase-like ATPases SHALO_1770 SM00450 Rhodanese Homology Domain SHALO_1774 SM00382 ATPases associated with a variety of cellular activities SHALO_1786 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1792 SM00842 Cell division protein FtsA SHALO_1793 SM00864 Tubulin/FtsZ family, GTPase domain SHALO_1793 SM00865 Tubulin/FtsZ family, C-terminal domain SHALO_1797 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1798 SM00382 ATPases associated with a variety of cellular activities SHALO_1799 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1799 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1805 SM00798 AICARFT/IMPCHase bienzyme SHALO_1805 SM00851 MGS-like domain SHALO_1809 SM00271 DnaJ molecular chaperone homology domain SHALO_1816 SM00052 Putative diguanylate phosphodiesterase SHALO_1816 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_1816 SM00091 PAS domain SHALO_1816 SM00267 diguanylate cyclase SHALO_1821 SM00912 haemagglutination activity domain SHALO_1834 SM00448 cheY-homologous receiver domain SHALO_1834 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1835 SM00387 Histidine kinase-like ATPases SHALO_1835 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1835 SM00448 cheY-homologous receiver domain SHALO_1836 SM00849 Metallo-beta-lactamase superfamily SHALO_1836 SM01027 Beta-Casp domain SHALO_1840 SM00387 Histidine kinase-like ATPases SHALO_1840 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1841 SM00448 cheY-homologous receiver domain SHALO_1841 SM00862 Transcriptional regulatory protein, C terminal SHALO_1846 SM00855 Phosphoglycerate mutase family SHALO_1850 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_1855 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SHALO_1856 SM00387 Histidine kinase-like ATPases SHALO_1856 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1856 SM00897 FIST N domain SHALO_1856 SM01204 SHALO_1856 SHALO_1857 SM00448 cheY-homologous receiver domain SHALO_1857 SM00862 Transcriptional regulatory protein, C terminal SHALO_1862 SM00448 cheY-homologous receiver domain SHALO_1862 SM00862 Transcriptional regulatory protein, C terminal SHALO_1869 SM00342 helix_turn_helix, arabinose operon control protein SHALO_1879 SM01018 B12 binding domain SHALO_1881 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1886 SM00938 Nitrogen regulatory protein P-II SHALO_1888 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_1889 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_1893 SM00947 Carbonic anhydrase SHALO_1895 SM00052 Putative diguanylate phosphodiesterase SHALO_1895 SM00091 PAS domain SHALO_1895 SM00267 diguanylate cyclase SHALO_1895 SM01079 SHALO_1895 SHALO_1903 SM01329 SHALO_1903 SHALO_1905 SM00382 ATPases associated with a variety of cellular activities SHALO_1909 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SHALO_1911 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_1912 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1917 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_1918 SM00342 helix_turn_helix, arabinose operon control protein SHALO_1922 SM00267 diguanylate cyclase SHALO_1925 SM00341 Helicase and RNase D C-terminal SHALO_1925 SM00487 DEAD-like helicases superfamily SHALO_1925 SM00490 helicase superfamily c-terminal domain SHALO_1925 SM00956 SHALO_1925 SHALO_1928 SM00487 DEAD-like helicases superfamily SHALO_1928 SM00490 helicase superfamily c-terminal domain SHALO_1930 SM00091 PAS domain SHALO_1930 SM00267 diguanylate cyclase SHALO_1931 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_1931 SM00387 Histidine kinase-like ATPases SHALO_1931 SM00388 His Kinase A (phosphoacceptor) domain SHALO_1932 SM00448 cheY-homologous receiver domain SHALO_1932 SM00862 Transcriptional regulatory protein, C terminal SHALO_1958 SM00448 cheY-homologous receiver domain SHALO_1958 SM00862 Transcriptional regulatory protein, C terminal SHALO_1959 SM00387 Histidine kinase-like ATPases SHALO_1963 SM00899 SHALO_1963 SHALO_1978 SM00487 DEAD-like helicases superfamily SHALO_1978 SM00490 helicase superfamily c-terminal domain SHALO_1983 SM00487 DEAD-like helicases superfamily SHALO_1983 SM00490 helicase superfamily c-terminal domain SHALO_1986 SM00479 SHALO_1986 SHALO_1991 SM00478 endonuclease III SHALO_1993 SM00487 DEAD-like helicases superfamily SHALO_1993 SM00490 helicase superfamily c-terminal domain SHALO_1993 SM00982 SHALO_1993 SHALO_1993 SM01058 CarD-like/TRCF domain SHALO_1997 SM00267 diguanylate cyclase SHALO_2002 SM01323 SHALO_2002 SHALO_2007 SM00382 ATPases associated with a variety of cellular activities SHALO_2007 SM01086 C-terminal, D2-small domain, of ClpB protein SHALO_2024 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2024 SM00871 Bacterial transcription activator, effector binding domain SHALO_2034 SM00382 ATPases associated with a variety of cellular activities SHALO_2034 SM00962 SRP54-type protein, GTPase domain SHALO_2034 SM00963 SRP54-type protein, helical bundle domain SHALO_2041 SM01001 AIR carboxylase SHALO_2045 SM01230 SHALO_2045 SHALO_2047 SM00382 ATPases associated with a variety of cellular activities SHALO_2051 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SHALO_2053 SM00448 cheY-homologous receiver domain SHALO_2053 SM00862 Transcriptional regulatory protein, C terminal SHALO_2054 SM00091 PAS domain SHALO_2054 SM00387 Histidine kinase-like ATPases SHALO_2055 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2087 SM00563 Phosphate acyltransferases SHALO_2088 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SHALO_2095 SM00764 Citrate lyase ligase C-terminal domain SHALO_2098 SM00387 Histidine kinase-like ATPases SHALO_2099 SM00448 cheY-homologous receiver domain SHALO_2103 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_2103 SM00073 Histidine Phosphotransfer domain SHALO_2103 SM00387 Histidine kinase-like ATPases SHALO_2103 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2103 SM00448 cheY-homologous receiver domain SHALO_2104 SM00448 cheY-homologous receiver domain SHALO_2104 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_2108 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_2117 SM00267 diguanylate cyclase SHALO_2127 SM00382 ATPases associated with a variety of cellular activities SHALO_2128 SM00052 Putative diguanylate phosphodiesterase SHALO_2128 SM00267 diguanylate cyclase SHALO_2143 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SHALO_2147 SM00267 diguanylate cyclase SHALO_2153 SM00448 cheY-homologous receiver domain SHALO_2157 SM00867 YceI-like domain SHALO_2162 SM00382 ATPases associated with a variety of cellular activities SHALO_2170 SM00382 ATPases associated with a variety of cellular activities SHALO_2179 SM00671 Sel1-like repeats. SHALO_2180 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2188 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SHALO_2200 SM00028 Tetratricopeptide repeats SHALO_2201 SM00917 LeuA allosteric (dimerisation) domain SHALO_2204 SM00382 ATPases associated with a variety of cellular activities SHALO_2206 SM00448 cheY-homologous receiver domain SHALO_2224 SM00859 Semialdehyde dehydrogenase, NAD binding domain SHALO_2232 SM00984 UDP binding domain SHALO_2249 SM00028 Tetratricopeptide repeats SHALO_2253 SM00052 Putative diguanylate phosphodiesterase SHALO_2253 SM00267 diguanylate cyclase SHALO_2255 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_2260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2261 SM00797 Allophanate hydrolase subunit 2 SHALO_2262 SM00796 Allophanate hydrolase subunit 1 SHALO_2267 SM00448 cheY-homologous receiver domain SHALO_2267 SM00862 Transcriptional regulatory protein, C terminal SHALO_2268 SM00387 Histidine kinase-like ATPases SHALO_2268 SM01049 SHALO_2268 SHALO_2269 SM01228 SHALO_2269 SHALO_2275 SM00825 Beta-ketoacyl synthase SHALO_2276 SM00823 Phosphopantetheine attachment site SHALO_2277 SM00822 SHALO_2277 SHALO_2283 SM00382 ATPases associated with a variety of cellular activities SHALO_2291 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2294 SM00387 Histidine kinase-like ATPases SHALO_2295 SM00448 cheY-homologous receiver domain SHALO_2295 SM00862 Transcriptional regulatory protein, C terminal SHALO_2298 SM00052 Putative diguanylate phosphodiesterase SHALO_2298 SM00267 diguanylate cyclase SHALO_2302 SM00878 Biotin carboxylase C-terminal domain SHALO_2306 SM00487 DEAD-like helicases superfamily SHALO_2306 SM00490 helicase superfamily c-terminal domain SHALO_2324 SM00890 Domain of unknown function SHALO_2333 SM00450 Rhodanese Homology Domain SHALO_2340 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2349 SM00387 Histidine kinase-like ATPases SHALO_2355 SM00387 Histidine kinase-like ATPases SHALO_2355 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2356 SM00448 cheY-homologous receiver domain SHALO_2356 SM00862 Transcriptional regulatory protein, C terminal SHALO_2358 SM00563 Phosphate acyltransferases SHALO_2360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2362 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2366 SM00382 ATPases associated with a variety of cellular activities SHALO_2368 SM00862 Transcriptional regulatory protein, C terminal SHALO_2369 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2375 SM00530 Helix-turn-helix XRE-family like proteins SHALO_2388 SM00448 cheY-homologous receiver domain SHALO_2388 SM00862 Transcriptional regulatory protein, C terminal SHALO_2389 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_2389 SM00091 PAS domain SHALO_2389 SM00387 Histidine kinase-like ATPases SHALO_2391 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SHALO_2395 SM00788 Adenylosuccinate synthetase SHALO_2398 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2398 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2399 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2399 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2401 SM00861 Transketolase, pyrimidine binding domain SHALO_2403 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SHALO_2410 SM00662 RNA polymerases D SHALO_2411 SM00363 S4 RNA-binding domain SHALO_2411 SM01390 SHALO_2411 SHALO_2425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SHALO_2426 SM01374 SHALO_2426 SHALO_2430 SM00322 K homology RNA-binding domain SHALO_2433 SM01382 SHALO_2433 SHALO_2433 SM01383 SHALO_2433 SHALO_2437 SM01403 SHALO_2437 SHALO_2439 SM00331 Sigma factor PP2C-like phosphatases SHALO_2446 SM00382 ATPases associated with a variety of cellular activities SHALO_2449 SM00899 SHALO_2449 SHALO_2452 SM00358 Double-stranded RNA binding motif SHALO_2452 SM00535 Ribonuclease III family SHALO_2455 SM00400 zinc finger SHALO_2455 SM00493 SHALO_2455 SHALO_2457 SM00448 cheY-homologous receiver domain SHALO_2459 SM00267 diguanylate cyclase SHALO_2460 SM00448 cheY-homologous receiver domain SHALO_2461 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_2461 SM00091 PAS domain SHALO_2461 SM00387 Histidine kinase-like ATPases SHALO_2461 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2462 SM00448 cheY-homologous receiver domain SHALO_2464 SM00387 Histidine kinase-like ATPases SHALO_2465 SM00138 Methyltransferase, chemotaxis proteins SHALO_2466 SM00073 Histidine Phosphotransfer domain SHALO_2466 SM00260 Two component signalling adaptor domain SHALO_2466 SM00387 Histidine kinase-like ATPases SHALO_2466 SM01231 SHALO_2466 SHALO_2468 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2469 SM00260 Two component signalling adaptor domain SHALO_2470 SM00448 cheY-homologous receiver domain SHALO_2471 SM00271 DnaJ molecular chaperone homology domain SHALO_2487 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_2495 SM01022 SHALO_2495 SHALO_2500 SM00244 prohibitin homologues SHALO_2516 SM00448 cheY-homologous receiver domain SHALO_2516 SM00862 Transcriptional regulatory protein, C terminal SHALO_2517 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2520 SM00899 SHALO_2520 SHALO_2522 SM00965 Secretin and TonB N terminus short domain SHALO_2534 SM00382 ATPases associated with a variety of cellular activities SHALO_2535 SM00382 ATPases associated with a variety of cellular activities SHALO_2538 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2539 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2540 SM00267 diguanylate cyclase SHALO_2542 SM00052 Putative diguanylate phosphodiesterase SHALO_2544 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_2545 SM00382 ATPases associated with a variety of cellular activities SHALO_2560 SM00382 ATPases associated with a variety of cellular activities SHALO_2565 SM00091 PAS domain SHALO_2565 SM00267 diguanylate cyclase SHALO_2565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2567 SM00448 cheY-homologous receiver domain SHALO_2567 SM00862 Transcriptional regulatory protein, C terminal SHALO_2568 SM00387 Histidine kinase-like ATPases SHALO_2568 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2571 SM00052 Putative diguanylate phosphodiesterase SHALO_2574 SM00091 PAS domain SHALO_2574 SM00387 Histidine kinase-like ATPases SHALO_2574 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2575 SM00091 PAS domain SHALO_2575 SM00387 Histidine kinase-like ATPases SHALO_2575 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2576 SM00448 cheY-homologous receiver domain SHALO_2577 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2581 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SHALO_2584 SM00382 ATPases associated with a variety of cellular activities SHALO_2592 SM00382 ATPases associated with a variety of cellular activities SHALO_2595 SM00028 Tetratricopeptide repeats SHALO_2605 SM00870 SHALO_2605 SHALO_2606 SM00387 Histidine kinase-like ATPases SHALO_2607 SM00448 cheY-homologous receiver domain SHALO_2607 SM00862 Transcriptional regulatory protein, C terminal SHALO_2609 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_2609 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SHALO_2616 SM00382 ATPases associated with a variety of cellular activities SHALO_2620 SM00671 Sel1-like repeats. SHALO_2626 SM00387 Histidine kinase-like ATPases SHALO_2627 SM00448 cheY-homologous receiver domain SHALO_2627 SM00862 Transcriptional regulatory protein, C terminal SHALO_2628 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2628 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2642 SM00062 Bacterial periplasmic substrate-binding proteins SHALO_2644 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SHALO_2644 SM00091 PAS domain SHALO_2644 SM00267 diguanylate cyclase SHALO_2645 SM00347 helix_turn_helix multiple antibiotic resistance protein SHALO_2650 SM00382 ATPases associated with a variety of cellular activities SHALO_2661 SM00382 ATPases associated with a variety of cellular activities SHALO_2678 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2681 SM00342 helix_turn_helix, arabinose operon control protein SHALO_2689 SM00387 Histidine kinase-like ATPases SHALO_2690 SM00448 cheY-homologous receiver domain SHALO_2697 SM00347 helix_turn_helix multiple antibiotic resistance protein SHALO_2698 SM00867 YceI-like domain SHALO_2700 SM00704 CDGSH-type zinc finger. Function unknown. SHALO_2705 SM00091 PAS domain SHALO_2706 SM00448 cheY-homologous receiver domain SHALO_2706 SM00862 Transcriptional regulatory protein, C terminal SHALO_2707 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2724 SM00825 Beta-ketoacyl synthase SHALO_2726 SM00487 DEAD-like helicases superfamily SHALO_2726 SM00490 helicase superfamily c-terminal domain SHALO_2733 SM00460 Transglutaminase/protease-like homologues SHALO_2736 SM00448 cheY-homologous receiver domain SHALO_2739 SM00796 Allophanate hydrolase subunit 1 SHALO_2739 SM00797 Allophanate hydrolase subunit 2 SHALO_2739 SM00878 Biotin carboxylase C-terminal domain SHALO_2742 SM00382 ATPases associated with a variety of cellular activities SHALO_2745 SM00387 Histidine kinase-like ATPases SHALO_2746 SM00448 cheY-homologous receiver domain SHALO_2746 SM00862 Transcriptional regulatory protein, C terminal SHALO_2747 SM00054 EF-hand, calcium binding motif SHALO_2748 SM00965 Secretin and TonB N terminus short domain SHALO_2751 SM00448 cheY-homologous receiver domain SHALO_2751 SM00862 Transcriptional regulatory protein, C terminal SHALO_2752 SM00387 Histidine kinase-like ATPases SHALO_2752 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2758 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2758 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2758 SM01049 SHALO_2758 SHALO_2763 SM00925 MltA specific insert domain SHALO_2770 SM00852 Probable molybdopterin binding domain SHALO_2775 SM00382 ATPases associated with a variety of cellular activities SHALO_2779 SM00267 diguanylate cyclase SHALO_2798 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2802 SM00448 cheY-homologous receiver domain SHALO_2802 SM00862 Transcriptional regulatory protein, C terminal SHALO_2803 SM00387 Histidine kinase-like ATPases SHALO_2813 SM00316 Ribosomal protein S1-like RNA-binding domain SHALO_2813 SM00732 Likely ribonuclease with RNase H fold. SHALO_2823 SM00382 ATPases associated with a variety of cellular activities SHALO_2826 SM00954 Region found in RelA / SpoT proteins SHALO_2832 SM01144 SHALO_2832 SHALO_2844 SM00448 cheY-homologous receiver domain SHALO_2844 SM00862 Transcriptional regulatory protein, C terminal SHALO_2845 SM00387 Histidine kinase-like ATPases SHALO_2845 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2846 SM00382 ATPases associated with a variety of cellular activities SHALO_2856 SM00232 JAB/MPN domain SHALO_2863 SM00887 Ethylbenzene dehydrogenase SHALO_2864 SM00448 cheY-homologous receiver domain SHALO_2864 SM00862 Transcriptional regulatory protein, C terminal SHALO_2865 SM00387 Histidine kinase-like ATPases SHALO_2865 SM00388 His Kinase A (phosphoacceptor) domain SHALO_2867 SM00267 diguanylate cyclase SHALO_2869 SM00450 Rhodanese Homology Domain SHALO_2873 SM00226 Low molecular weight phosphatase family SHALO_2875 SM00226 Low molecular weight phosphatase family SHALO_2881 SM00382 ATPases associated with a variety of cellular activities SHALO_2882 SM00382 ATPases associated with a variety of cellular activities SHALO_2882 SM00448 cheY-homologous receiver domain SHALO_2883 SM00387 Histidine kinase-like ATPases SHALO_2886 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2889 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SHALO_2889 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SHALO_2893 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SHALO_2895 SM00919 Malic enzyme, NAD binding domain SHALO_2895 SM01274 SHALO_2895 SHALO_2898 SM00878 Biotin carboxylase C-terminal domain SHALO_2903 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SHALO_2912 SM00858 SHALO_2912 SHALO_2929 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SHALO_2929 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SHALO_2929 SM00493 SHALO_2929 SHALO_2930 SM00729 Elongator protein 3, MiaB family, Radical SAM SHALO_2930 SM00876 Biotin and Thiamin Synthesis associated domain SHALO_2934 SM01192 SHALO_2934 SHALO_2934 SM01193 SHALO_2934 SHALO_2935 SM00382 ATPases associated with a variety of cellular activities SHALO_2941 SM00052 Putative diguanylate phosphodiesterase SHALO_2941 SM00267 diguanylate cyclase SHALO_2941 SM01049 SHALO_2941 SHALO_2956 SM00248 ankyrin repeats SHALO_2957 SM01060 SHALO_2957 SHALO_2958 SM00419 helix_turn_helix, cAMP Regulatory protein SHALO_2962 SM00052 Putative diguanylate phosphodiesterase SHALO_2962 SM00267 diguanylate cyclase SHALO_2964 SM00886 Stress responsive A/B Barrel Domain SHALO_2967 SM00360 RNA recognition motif SHALO_2976 SM00887 Ethylbenzene dehydrogenase SHALO_2979 SM00450 Rhodanese Homology Domain SHALO_2991 SM00450 Rhodanese Homology Domain SHALO_2994 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_2998 SM00450 Rhodanese Homology Domain SHALO_3001 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SHALO_3003 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain SHALO_3003 SM01080 SHALO_3003 SHALO_3004 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SHALO_3004 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SHALO_3004 SM00849 Metallo-beta-lactamase superfamily SHALO_3014 SM00838 Elongation factor G C-terminus