locus-tag class description SMUL_0001 PF08299 Bacterial dnaA protein helix-turn-helix SMUL_0001 PF00308 Bacterial dnaA protein SMUL_0001 PF11638 DnaA N-terminal domain SMUL_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SMUL_0002 PF02767 DNA polymerase III beta subunit, central domain SMUL_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SMUL_0003 PF01751 Toprim domain SMUL_0003 PF00204 DNA gyrase B SMUL_0003 PF00986 DNA gyrase B subunit, carboxyl terminus SMUL_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0004 PF00563 EAL domain SMUL_0005 PF14489 QueF-like protein SMUL_0008 PF03167 Uracil DNA glycosylase superfamily SMUL_0009 PF00360 Phytochrome region SMUL_0009 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0009 PF01590 GAF domain SMUL_0009 PF00563 EAL domain SMUL_0010 PF00730 HhH-GPD superfamily base excision DNA repair protein SMUL_0010 PF00633 Helix-hairpin-helix motif SMUL_0010 PF14815 NUDIX domain SMUL_0011 PF00571 CBS domain SMUL_0011 PF00005 ABC transporter SMUL_0012 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_0013 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMUL_0014 PF07690 Major Facilitator Superfamily SMUL_0015 PF05681 Fumarate hydratase (Fumerase) SMUL_0016 PF05683 Fumarase C-terminus SMUL_0018 PF00330 Aconitase family (aconitate hydratase) SMUL_0019 PF00694 Aconitase C-terminal domain SMUL_0027 PF13276 HTH-like domain SMUL_0027 PF00665 Integrase core domain SMUL_0027 PF13333 Integrase core domain SMUL_0028 PF01527 Transposase SMUL_0032 PF00872 Transposase, Mutator family SMUL_0039 PF01695 IstB-like ATP binding protein SMUL_0040 PF00665 Integrase core domain SMUL_0040 PF02796 Helix-turn-helix domain of resolvase SMUL_0044 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0046 PF06826 Predicted Permease Membrane Region SMUL_0046 PF02080 TrkA-C domain SMUL_0049 PF13276 HTH-like domain SMUL_0049 PF00665 Integrase core domain SMUL_0049 PF13333 Integrase core domain SMUL_0051 PF00486 Transcriptional regulatory protein, C terminal SMUL_0051 PF00072 Response regulator receiver domain SMUL_0052 PF00872 Transposase, Mutator family SMUL_0054 PF05935 Arylsulfotransferase (ASST) SMUL_0054 PF17425 Arylsulfotransferase Ig-like domain SMUL_0056 PF02600 Disulfide bond formation protein DsbB SMUL_0057 PF01323 DSBA-like thioredoxin domain SMUL_0059 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMUL_0059 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMUL_0060 PF00857 Isochorismatase family SMUL_0061 PF16925 Tetracyclin repressor-like, C-terminal domain SMUL_0061 PF00440 Bacterial regulatory proteins, tetR family SMUL_0063 PF12833 Helix-turn-helix domain SMUL_0064 PF02910 Fumarate reductase flavoprotein C-term SMUL_0064 PF00890 FAD binding domain SMUL_0065 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMUL_0065 PF00056 lactate/malate dehydrogenase, NAD binding domain SMUL_0068 PF08241 Methyltransferase domain SMUL_0069 PF01875 Memo-like protein SMUL_0074 PF07883 Cupin domain SMUL_0074 PF12833 Helix-turn-helix domain SMUL_0076 PF05728 Uncharacterised protein family (UPF0227) SMUL_0077 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_0077 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMUL_0079 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0079 PF01568 Molydopterin dinucleotide binding domain SMUL_0079 PF00384 Molybdopterin oxidoreductase SMUL_0080 PF08448 PAS fold SMUL_0080 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0089 PF00920 Dehydratase family SMUL_0090 PF01914 MarC family integral membrane protein SMUL_0093 PF00005 ABC transporter SMUL_0094 PF01032 FecCD transport family SMUL_0097 PF13426 PAS domain SMUL_0097 PF08447 PAS fold SMUL_0097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0098 PF00483 Nucleotidyl transferase SMUL_0099 PF00117 Glutamine amidotransferase class-I SMUL_0099 PF06418 CTP synthase N-terminus SMUL_0100 PF02272 DHHA1 domain SMUL_0100 PF01368 DHH family SMUL_0100 PF17768 RecJ OB domain SMUL_0102 PF00795 Carbon-nitrogen hydrolase SMUL_0103 PF00268 Ribonucleotide reductase, small chain SMUL_0107 PF13597 Anaerobic ribonucleoside-triphosphate reductase SMUL_0107 PF03477 ATP cone domain SMUL_0108 PF01177 Asp/Glu/Hydantoin racemase SMUL_0109 PF03477 ATP cone domain SMUL_0109 PF02867 Ribonucleotide reductase, barrel domain SMUL_0109 PF00317 Ribonucleotide reductase, all-alpha domain SMUL_0110 PF10397 Adenylosuccinate lyase C-terminus SMUL_0110 PF00206 Lyase SMUL_0111 PF00849 RNA pseudouridylate synthase SMUL_0112 PF01557 Fumarylacetoacetate (FAA) hydrolase family SMUL_0113 PF04055 Radical SAM superfamily SMUL_0115 PF00977 Histidine biosynthesis protein SMUL_0116 PF00398 Ribosomal RNA adenine dimethylase SMUL_0117 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMUL_0117 PF00753 Metallo-beta-lactamase superfamily SMUL_0117 PF17770 Ribonuclease J C-terminal domain SMUL_0118 PF00571 CBS domain SMUL_0118 PF01380 SIS domain SMUL_0119 PF00849 RNA pseudouridylate synthase SMUL_0119 PF01479 S4 domain SMUL_0120 PF16193 AAA C-terminal domain SMUL_0120 PF01661 Macro domain SMUL_0120 PF12002 MgsA AAA+ ATPase C terminal SMUL_0120 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMUL_0122 PF01312 FlhB HrpN YscU SpaS Family SMUL_0124 PF02769 AIR synthase related protein, C-terminal domain SMUL_0124 PF00586 AIR synthase related protein, N-terminal domain SMUL_0125 PF01121 Dephospho-CoA kinase SMUL_0126 PF01678 Diaminopimelate epimerase SMUL_0128 PF03462 PCRF domain SMUL_0128 PF00472 RF-1 domain SMUL_0129 PF01649 Ribosomal protein S20 SMUL_0132 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMUL_0132 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMUL_0132 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMUL_0132 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMUL_0133 PF01252 Signal peptidase (SPase) II SMUL_0135 PF03129 Anticodon binding domain SMUL_0135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMUL_0135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMUL_0136 PF00707 Translation initiation factor IF-3, C-terminal domain SMUL_0136 PF05198 Translation initiation factor IF-3, N-terminal domain SMUL_0137 PF01632 Ribosomal protein L35 SMUL_0138 PF00453 Ribosomal protein L20 SMUL_0139 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SMUL_0139 PF12801 4Fe-4S binding domain SMUL_0139 PF13746 4Fe-4S dicluster domain SMUL_0141 PF01165 Ribosomal protein S21 SMUL_0144 PF03738 Glutathionylspermidine synthase preATP-grasp SMUL_0145 PF04461 Protein of unknown function (DUF520) SMUL_0147 PF01219 Prokaryotic diacylglycerol kinase SMUL_0148 PF01274 Malate synthase SMUL_0153 PF13426 PAS domain SMUL_0153 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0153 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0153 PF00672 HAMP domain SMUL_0154 PF00072 Response regulator receiver domain SMUL_0154 PF00486 Transcriptional regulatory protein, C terminal SMUL_0157 PF02470 MlaD protein SMUL_0158 PF00005 ABC transporter SMUL_0159 PF02405 Permease MlaE SMUL_0160 PF01625 Peptide methionine sulfoxide reductase SMUL_0161 PF01914 MarC family integral membrane protein SMUL_0162 PF17202 Single cache domain 3 SMUL_0162 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0162 PF00672 HAMP domain SMUL_0164 PF11849 Domain of unknown function (DUF3369) SMUL_0165 PF11849 Domain of unknown function (DUF3369) SMUL_0169 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0170 PF00072 Response regulator receiver domain SMUL_0170 PF00486 Transcriptional regulatory protein, C terminal SMUL_0171 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMUL_0172 PF00543 Nitrogen regulatory protein P-II SMUL_0173 PF00909 Ammonium Transporter Family SMUL_0176 PF00248 Aldo/keto reductase family SMUL_0178 PF00072 Response regulator receiver domain SMUL_0178 PF00486 Transcriptional regulatory protein, C terminal SMUL_0181 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_0182 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMUL_0183 PF00005 ABC transporter SMUL_0186 PF00950 ABC 3 transport family SMUL_0187 PF00005 ABC transporter SMUL_0191 PF01261 Xylose isomerase-like TIM barrel SMUL_0193 PF00501 AMP-binding enzyme SMUL_0193 PF13193 AMP-binding enzyme C-terminal domain SMUL_0194 PF06480 FtsH Extracellular SMUL_0194 PF17862 AAA+ lid domain SMUL_0194 PF00004 ATPase family associated with various cellular activities (AAA) SMUL_0194 PF01434 Peptidase family M41 SMUL_0195 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMUL_0196 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMUL_0197 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMUL_0198 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMUL_0201 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0201 PF01568 Molydopterin dinucleotide binding domain SMUL_0201 PF00384 Molybdopterin oxidoreductase SMUL_0201 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMUL_0201 PF13237 4Fe-4S dicluster domain SMUL_0202 PF00146 NADH dehydrogenase SMUL_0203 PF12838 4Fe-4S dicluster domain SMUL_0204 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMUL_0205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMUL_0206 PF00361 Proton-conducting membrane transporter SMUL_0206 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMUL_0207 PF00361 Proton-conducting membrane transporter SMUL_0208 PF00361 Proton-conducting membrane transporter SMUL_0210 PF13359 DDE superfamily endonuclease SMUL_0210 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_0211 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_0211 PF13359 DDE superfamily endonuclease SMUL_0213 PF00171 Aldehyde dehydrogenase family SMUL_0218 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0218 PF16591 Helical bimodular sensor domain SMUL_0218 PF00672 HAMP domain SMUL_0220 PF06463 Molybdenum Cofactor Synthesis C SMUL_0220 PF04055 Radical SAM superfamily SMUL_0221 PF03453 MoeA N-terminal region (domain I and II) SMUL_0221 PF00994 Probable molybdopterin binding domain SMUL_0221 PF03454 MoeA C-terminal region (domain IV) SMUL_0223 PF04452 RNA methyltransferase SMUL_0224 PF01197 Ribosomal protein L31 SMUL_0225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMUL_0226 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMUL_0226 PF00588 SpoU rRNA Methylase family SMUL_0229 PF00155 Aminotransferase class I and II SMUL_0230 PF00742 Homoserine dehydrogenase SMUL_0230 PF03447 Homoserine dehydrogenase, NAD binding domain SMUL_0230 PF01842 ACT domain SMUL_0231 PF02021 Uncharacterised protein family UPF0102 SMUL_0232 PF00085 Thioredoxin SMUL_0233 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_0234 PF01113 Dihydrodipicolinate reductase, N-terminus SMUL_0234 PF05173 Dihydrodipicolinate reductase, C-terminus SMUL_0235 PF00156 Phosphoribosyl transferase domain SMUL_0236 PF04055 Radical SAM superfamily SMUL_0236 PF16199 Radical_SAM C-terminal domain SMUL_0239 PF01502 Phosphoribosyl-AMP cyclohydrolase SMUL_0239 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SMUL_0241 PF01063 Amino-transferase class IV SMUL_0242 PF00578 AhpC/TSA family SMUL_0244 PF02677 Epoxyqueuosine reductase QueH SMUL_0245 PF07977 FabA-like domain SMUL_0246 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_0246 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SMUL_0247 PF07724 AAA domain (Cdc48 subfamily) SMUL_0247 PF10431 C-terminal, D2-small domain, of ClpB protein SMUL_0247 PF06689 ClpX C4-type zinc finger SMUL_0250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMUL_0250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SMUL_0250 PF02142 MGS-like domain SMUL_0255 PF00899 ThiF family SMUL_0256 PF01975 Survival protein SurE SMUL_0257 PF02684 Lipid-A-disaccharide synthetase SMUL_0260 PF02796 Helix-turn-helix domain of resolvase SMUL_0260 PF00665 Integrase core domain SMUL_0261 PF01695 IstB-like ATP binding protein SMUL_0264 PF01527 Transposase SMUL_0265 PF00665 Integrase core domain SMUL_0265 PF13276 HTH-like domain SMUL_0265 PF13333 Integrase core domain SMUL_0266 PF00872 Transposase, Mutator family SMUL_0267 PF13333 Integrase core domain SMUL_0267 PF13276 HTH-like domain SMUL_0267 PF00665 Integrase core domain SMUL_0273 PF12800 4Fe-4S binding domain SMUL_0273 PF13247 4Fe-4S dicluster domain SMUL_0274 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0274 PF00384 Molybdopterin oxidoreductase SMUL_0274 PF01568 Molydopterin dinucleotide binding domain SMUL_0275 PF00665 Integrase core domain SMUL_0275 PF02796 Helix-turn-helix domain of resolvase SMUL_0276 PF01695 IstB-like ATP binding protein SMUL_0277 PF03449 Transcription elongation factor, N-terminal SMUL_0277 PF01272 Transcription elongation factor, GreA/GreB, C-term SMUL_0278 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMUL_0278 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMUL_0280 PF00072 Response regulator receiver domain SMUL_0280 PF01584 CheW-like domain SMUL_0281 PF01584 CheW-like domain SMUL_0281 PF01627 Hpt domain SMUL_0281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0281 PF02895 Signal transducing histidine kinase, homodimeric domain SMUL_0281 PF07194 P2 response regulator binding domain SMUL_0282 PF01584 CheW-like domain SMUL_0285 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMUL_0287 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_0287 PF13359 DDE superfamily endonuclease SMUL_0288 PF13359 DDE superfamily endonuclease SMUL_0288 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_0289 PF00437 Type II/IV secretion system protein SMUL_0290 PF14693 Ribosomal protein TL5, C-terminal domain SMUL_0290 PF01386 Ribosomal L25p family SMUL_0291 PF01195 Peptidyl-tRNA hydrolase SMUL_0293 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMUL_0293 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMUL_0294 PF00800 Prephenate dehydratase SMUL_0294 PF01817 Chorismate mutase type II SMUL_0294 PF01842 ACT domain SMUL_0295 PF00155 Aminotransferase class I and II SMUL_0296 PF01514 Secretory protein of YscJ/FliF family SMUL_0296 PF08345 Flagellar M-ring protein C-terminal SMUL_0297 PF14841 FliG middle domain SMUL_0297 PF01706 FliG C-terminal domain SMUL_0297 PF14842 FliG N-terminal domain SMUL_0299 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SMUL_0299 PF02779 Transketolase, pyrimidine binding domain SMUL_0299 PF02780 Transketolase, C-terminal domain SMUL_0301 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMUL_0301 PF00578 AhpC/TSA family SMUL_0302 PF00672 HAMP domain SMUL_0302 PF02743 Cache domain SMUL_0302 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0303 PF00037 4Fe-4S binding domain SMUL_0304 PF00334 Nucleoside diphosphate kinase SMUL_0306 PF01783 Ribosomal L32p protein family SMUL_0307 PF02504 Fatty acid synthesis protein SMUL_0308 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMUL_0308 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMUL_0309 PF02153 Prephenate dehydrogenase SMUL_0309 PF01842 ACT domain SMUL_0310 PF01103 Surface antigen SMUL_0310 PF07244 Surface antigen variable number repeat SMUL_0311 PF02541 Ppx/GppA phosphatase family SMUL_0312 PF00037 4Fe-4S binding domain SMUL_0313 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0314 PF00486 Transcriptional regulatory protein, C terminal SMUL_0314 PF00072 Response regulator receiver domain SMUL_0316 PF02660 Glycerol-3-phosphate acyltransferase SMUL_0317 PF02445 Quinolinate synthetase A protein SMUL_0318 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMUL_0318 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMUL_0319 PF01312 FlhB HrpN YscU SpaS Family SMUL_0321 PF01551 Peptidase family M23 SMUL_0321 PF01476 LysM domain SMUL_0322 PF03775 Septum formation inhibitor MinC, C-terminal domain SMUL_0323 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SMUL_0325 PF08544 GHMP kinases C terminal SMUL_0325 PF00288 GHMP kinases N terminal domain SMUL_0327 PF04760 Translation initiation factor IF-2, N-terminal region SMUL_0327 PF11987 Translation-initiation factor 2 SMUL_0327 PF00009 Elongation factor Tu GTP binding domain SMUL_0328 PF02033 Ribosome-binding factor A SMUL_0329 PF17384 RimP C-terminal SH3 domain SMUL_0329 PF02576 RimP N-terminal domain SMUL_0330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SMUL_0330 PF01872 RibD C-terminal domain SMUL_0332 PF08448 PAS fold SMUL_0332 PF08447 PAS fold SMUL_0332 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0332 PF00563 EAL domain SMUL_0333 PF00313 'Cold-shock' DNA-binding domain SMUL_0334 PF13426 PAS domain SMUL_0334 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0334 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0334 PF00672 HAMP domain SMUL_0335 PF00486 Transcriptional regulatory protein, C terminal SMUL_0335 PF00072 Response regulator receiver domain SMUL_0337 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMUL_0339 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SMUL_0339 PF01266 FAD dependent oxidoreductase SMUL_0342 PF01568 Molydopterin dinucleotide binding domain SMUL_0342 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0342 PF00384 Molybdopterin oxidoreductase SMUL_0342 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMUL_0343 PF13247 4Fe-4S dicluster domain SMUL_0344 PF03916 Polysulphide reductase, NrfD SMUL_0345 PF10442 FIST C domain SMUL_0345 PF08495 FIST N domain SMUL_0345 PF00563 EAL domain SMUL_0345 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0346 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0346 PF00384 Molybdopterin oxidoreductase SMUL_0346 PF01568 Molydopterin dinucleotide binding domain SMUL_0347 PF13247 4Fe-4S dicluster domain SMUL_0348 PF03916 Polysulphide reductase, NrfD SMUL_0349 PF00486 Transcriptional regulatory protein, C terminal SMUL_0349 PF00072 Response regulator receiver domain SMUL_0350 PF00672 HAMP domain SMUL_0350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0350 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0350 PF13426 PAS domain SMUL_0352 PF06969 HemN C-terminal domain SMUL_0352 PF04055 Radical SAM superfamily SMUL_0354 PF01368 DHH family SMUL_0354 PF02833 DHHA2 domain SMUL_0357 PF01209 ubiE/COQ5 methyltransferase family SMUL_0358 PF02601 Exonuclease VII, large subunit SMUL_0358 PF13742 OB-fold nucleic acid binding domain SMUL_0360 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0361 PF00563 EAL domain SMUL_0361 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0361 PF03707 Bacterial signalling protein N terminal repeat SMUL_0362 PF00962 Adenosine/AMP deaminase SMUL_0364 PF06719 AraC-type transcriptional regulator N-terminus SMUL_0364 PF12833 Helix-turn-helix domain SMUL_0365 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMUL_0366 PF03466 LysR substrate binding domain SMUL_0366 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMUL_0367 PF03601 Conserved hypothetical protein 698 SMUL_0368 PF00255 Glutathione peroxidase SMUL_0372 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SMUL_0372 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SMUL_0374 PF01979 Amidohydrolase family SMUL_0375 PF01220 Dehydroquinase class II SMUL_0376 PF00557 Metallopeptidase family M24 SMUL_0376 PF01321 Creatinase/Prolidase N-terminal domain SMUL_0377 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMUL_0378 PF00448 SRP54-type protein, GTPase domain SMUL_0379 PF10609 NUBPL iron-transfer P-loop NTPase SMUL_0381 PF04539 Sigma-70 region 3 SMUL_0381 PF04545 Sigma-70, region 4 SMUL_0381 PF04542 Sigma-70 region 2 SMUL_0382 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMUL_0382 PF02154 Flagellar motor switch protein FliM SMUL_0383 PF04509 CheC-like family SMUL_0383 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMUL_0384 PF03641 Possible lysine decarboxylase SMUL_0386 PF00535 Glycosyl transferase family 2 SMUL_0387 PF08889 WbqC-like protein family SMUL_0388 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMUL_0389 PF00892 EamA-like transporter family SMUL_0392 PF14572 Phosphoribosyl synthetase-associated domain SMUL_0392 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SMUL_0393 PF06421 GTP-binding protein LepA C-terminus SMUL_0393 PF03144 Elongation factor Tu domain 2 SMUL_0393 PF00679 Elongation factor G C-terminus SMUL_0393 PF00009 Elongation factor Tu GTP binding domain SMUL_0394 PF00156 Phosphoribosyl transferase domain SMUL_0397 PF00521 DNA gyrase/topoisomerase IV, subunit A SMUL_0397 PF03989 DNA gyrase C-terminal domain, beta-propeller SMUL_0400 PF02954 Bacterial regulatory protein, Fis family SMUL_0400 PF00158 Sigma-54 interaction domain SMUL_0400 PF00072 Response regulator receiver domain SMUL_0401 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMUL_0401 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMUL_0403 PF01208 Uroporphyrinogen decarboxylase (URO-D) SMUL_0404 PF04055 Radical SAM superfamily SMUL_0406 PF16868 NMT1-like family SMUL_0408 PF13356 Arm DNA-binding domain SMUL_0408 PF00589 Phage integrase family SMUL_0412 PF00872 Transposase, Mutator family SMUL_0421 PF00145 C-5 cytosine-specific DNA methylase SMUL_0431 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SMUL_0433 PF00872 Transposase, Mutator family SMUL_0438 PF00056 lactate/malate dehydrogenase, NAD binding domain SMUL_0438 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMUL_0440 PF09363 XFP C-terminal domain SMUL_0440 PF09364 XFP N-terminal domain SMUL_0440 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SMUL_0442 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMUL_0443 PF01965 DJ-1/PfpI family SMUL_0449 PF08495 FIST N domain SMUL_0449 PF00563 EAL domain SMUL_0449 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0449 PF10442 FIST C domain SMUL_0452 PF00085 Thioredoxin SMUL_0459 PF09905 DNA-binding protein VF530 SMUL_0460 PF00106 short chain dehydrogenase SMUL_0463 PF13458 Periplasmic binding protein SMUL_0464 PF02653 Branched-chain amino acid transport system / permease component SMUL_0465 PF11862 Domain of unknown function (DUF3382) SMUL_0465 PF02653 Branched-chain amino acid transport system / permease component SMUL_0466 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMUL_0466 PF00005 ABC transporter SMUL_0467 PF00005 ABC transporter SMUL_0468 PF00171 Aldehyde dehydrogenase family SMUL_0471 PF03883 Peroxide stress protein YaaA SMUL_0476 PF03143 Elongation factor Tu C-terminal domain SMUL_0476 PF00009 Elongation factor Tu GTP binding domain SMUL_0476 PF03144 Elongation factor Tu domain 2 SMUL_0477 PF00471 Ribosomal protein L33 SMUL_0480 PF02357 Transcription termination factor nusG SMUL_0481 PF00298 Ribosomal protein L11, RNA binding domain SMUL_0481 PF03946 Ribosomal protein L11, N-terminal domain SMUL_0482 PF00687 Ribosomal protein L1p/L10e family SMUL_0483 PF00466 Ribosomal protein L10 SMUL_0484 PF00542 Ribosomal protein L7/L12 C-terminal domain SMUL_0484 PF16320 Ribosomal protein L7/L12 dimerisation domain SMUL_0485 PF00562 RNA polymerase Rpb2, domain 6 SMUL_0485 PF10385 RNA polymerase beta subunit external 1 domain SMUL_0485 PF04565 RNA polymerase Rpb2, domain 3 SMUL_0485 PF04563 RNA polymerase beta subunit SMUL_0485 PF04561 RNA polymerase Rpb2, domain 2 SMUL_0485 PF04560 RNA polymerase Rpb2, domain 7 SMUL_0486 PF04983 RNA polymerase Rpb1, domain 3 SMUL_0486 PF04998 RNA polymerase Rpb1, domain 5 SMUL_0486 PF05000 RNA polymerase Rpb1, domain 4 SMUL_0486 PF00623 RNA polymerase Rpb1, domain 2 SMUL_0486 PF04997 RNA polymerase Rpb1, domain 1 SMUL_0487 PF00164 Ribosomal protein S12/S23 SMUL_0488 PF00177 Ribosomal protein S7p/S5e SMUL_0489 PF03144 Elongation factor Tu domain 2 SMUL_0489 PF00009 Elongation factor Tu GTP binding domain SMUL_0489 PF03764 Elongation factor G, domain IV SMUL_0489 PF14492 Elongation Factor G, domain II SMUL_0489 PF00679 Elongation factor G C-terminus SMUL_0490 PF00005 ABC transporter SMUL_0490 PF09383 NIL domain SMUL_0491 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_0492 PF03180 NLPA lipoprotein SMUL_0495 PF01037 Lrp/AsnC ligand binding domain SMUL_0496 PF00892 EamA-like transporter family SMUL_0500 PF18364 Molybdopterin oxidoreductase N-terminal domain SMUL_0500 PF00384 Molybdopterin oxidoreductase SMUL_0500 PF01568 Molydopterin dinucleotide binding domain SMUL_0502 PF00072 Response regulator receiver domain SMUL_0502 PF00486 Transcriptional regulatory protein, C terminal SMUL_0503 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMUL_0504 PF08448 PAS fold SMUL_0504 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0504 PF00072 Response regulator receiver domain SMUL_0504 PF13188 PAS domain SMUL_0505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0505 PF02743 Cache domain SMUL_0505 PF00672 HAMP domain SMUL_0506 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0506 PF08447 PAS fold SMUL_0508 PF00384 Molybdopterin oxidoreductase SMUL_0508 PF01568 Molydopterin dinucleotide binding domain SMUL_0508 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMUL_0508 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0509 PF00146 NADH dehydrogenase SMUL_0510 PF12838 4Fe-4S dicluster domain SMUL_0511 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMUL_0512 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMUL_0513 PF00361 Proton-conducting membrane transporter SMUL_0513 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMUL_0514 PF00361 Proton-conducting membrane transporter SMUL_0515 PF00361 Proton-conducting membrane transporter SMUL_0517 PF10531 SLBB domain SMUL_0517 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMUL_0517 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMUL_0519 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMUL_0519 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMUL_0520 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMUL_0521 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMUL_0524 PF01168 Alanine racemase, N-terminal domain SMUL_0524 PF00842 Alanine racemase, C-terminal domain SMUL_0528 PF02527 rRNA small subunit methyltransferase G SMUL_0529 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMUL_0529 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMUL_0530 PF01741 Large-conductance mechanosensitive channel, MscL SMUL_0532 PF00925 GTP cyclohydrolase II SMUL_0533 PF00490 Delta-aminolevulinic acid dehydratase SMUL_0534 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMUL_0534 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMUL_0535 PF10788 Protein of unknown function (DUF2603) SMUL_0536 PF06969 HemN C-terminal domain SMUL_0536 PF04055 Radical SAM superfamily SMUL_0537 PF02754 Cysteine-rich domain SMUL_0542 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SMUL_0543 PF08448 PAS fold SMUL_0543 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0544 PF07690 Major Facilitator Superfamily SMUL_0545 PF02810 SEC-C motif SMUL_0548 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0548 PF08448 PAS fold SMUL_0549 PF01790 Prolipoprotein diacylglyceryl transferase SMUL_0550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMUL_0551 PF02910 Fumarate reductase flavoprotein C-term SMUL_0551 PF00890 FAD binding domain SMUL_0552 PF13183 4Fe-4S dicluster domain SMUL_0552 PF13085 2Fe-2S iron-sulfur cluster binding domain SMUL_0553 PF00350 Dynamin family SMUL_0554 PF00350 Dynamin family SMUL_0555 PF01594 AI-2E family transporter SMUL_0556 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMUL_0556 PF17864 RuvB AAA lid domain SMUL_0556 PF05491 RuvB C-terminal winged helix domain SMUL_0557 PF02548 Ketopantoate hydroxymethyltransferase SMUL_0559 PF00290 Tryptophan synthase alpha chain SMUL_0562 PF00318 Ribosomal protein S2 SMUL_0563 PF00889 Elongation factor TS SMUL_0564 PF00005 ABC transporter SMUL_0565 PF01311 Bacterial export proteins, family 1 SMUL_0567 PF00625 Guanylate kinase SMUL_0568 PF02416 mttA/Hcf106 family SMUL_0569 PF03485 Arginyl tRNA synthetase N terminal domain SMUL_0569 PF05746 DALR anticodon binding domain SMUL_0569 PF00750 tRNA synthetases class I (R) SMUL_0571 PF08495 FIST N domain SMUL_0571 PF10442 FIST C domain SMUL_0571 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0571 PF00563 EAL domain SMUL_0574 PF01475 Ferric uptake regulator family SMUL_0575 PF00034 Cytochrome c SMUL_0575 PF03150 Di-haem cytochrome c peroxidase SMUL_0576 PF01467 Cytidylyltransferase-like SMUL_0577 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SMUL_0577 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SMUL_0578 PF00162 Phosphoglycerate kinase SMUL_0579 PF00121 Triosephosphate isomerase SMUL_0581 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_0583 PF08529 NusA N-terminal domain SMUL_0583 PF13184 NusA-like KH domain SMUL_0585 PF01938 TRAM domain SMUL_0585 PF00919 Uncharacterized protein family UPF0004 SMUL_0585 PF04055 Radical SAM superfamily SMUL_0590 PF01171 PP-loop family SMUL_0591 PF04055 Radical SAM superfamily SMUL_0591 PF00919 Uncharacterized protein family UPF0004 SMUL_0592 PF02569 Pantoate-beta-alanine ligase SMUL_0593 PF03462 PCRF domain SMUL_0593 PF00472 RF-1 domain SMUL_0598 PF12170 DNA polymerase III tau subunit V interacting with alpha SMUL_0598 PF12169 DNA polymerase III subunits gamma and tau domain III SMUL_0599 PF07497 Rho termination factor, RNA-binding domain SMUL_0599 PF07498 Rho termination factor, N-terminal domain SMUL_0599 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMUL_0600 PF01255 Putative undecaprenyl diphosphate synthase SMUL_0601 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0601 PF03707 Bacterial signalling protein N terminal repeat SMUL_0601 PF00563 EAL domain SMUL_0602 PF03063 Prismane/CO dehydrogenase family SMUL_0608 PF03976 Polyphosphate kinase 2 (PPK2) SMUL_0612 PF00355 Rieske [2Fe-2S] domain SMUL_0612 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMUL_0613 PF00032 Cytochrome b(C-terminal)/b6/petD SMUL_0613 PF00033 Cytochrome b/b6/petB SMUL_0616 PF00271 Helicase conserved C-terminal domain SMUL_0616 PF00270 DEAD/DEAH box helicase SMUL_0617 PF02447 GntP family permease SMUL_0618 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SMUL_0618 PF18381 YcaO cyclodehydratase C-terminal domain SMUL_0620 PF08447 PAS fold SMUL_0620 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0620 PF00989 PAS fold SMUL_0621 PF00072 Response regulator receiver domain SMUL_0622 PF03480 Bacterial extracellular solute-binding protein, family 7 SMUL_0623 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMUL_0624 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMUL_0626 PF01934 Protein of unknown function DUF86 SMUL_0635 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SMUL_0640 PF02653 Branched-chain amino acid transport system / permease component SMUL_0641 PF02653 Branched-chain amino acid transport system / permease component SMUL_0641 PF11862 Domain of unknown function (DUF3382) SMUL_0642 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMUL_0642 PF00005 ABC transporter SMUL_0643 PF00005 ABC transporter SMUL_0644 PF05140 ResB-like family SMUL_0644 PF01578 Cytochrome C assembly protein SMUL_0652 PF18146 Damage-inducible protein CinA KH domain SMUL_0652 PF02464 Competence-damaged protein SMUL_0652 PF00994 Probable molybdopterin binding domain SMUL_0653 PF00133 tRNA synthetases class I (I, L, M and V) SMUL_0653 PF08264 Anticodon-binding domain of tRNA SMUL_0655 PF01425 Amidase SMUL_0656 PF00478 IMP dehydrogenase / GMP reductase domain SMUL_0656 PF00571 CBS domain SMUL_0657 PF00561 alpha/beta hydrolase fold SMUL_0658 PF02609 Exonuclease VII small subunit SMUL_0660 PF00899 ThiF family SMUL_0661 PF00155 Aminotransferase class I and II SMUL_0662 PF02875 Mur ligase family, glutamate ligase domain SMUL_0662 PF01225 Mur ligase family, catalytic domain SMUL_0662 PF08245 Mur ligase middle domain SMUL_0664 PF01713 Smr domain SMUL_0664 PF00488 MutS domain V SMUL_0665 PF01546 Peptidase family M20/M25/M40 SMUL_0665 PF07687 Peptidase dimerisation domain SMUL_0666 PF01042 Endoribonuclease L-PSP SMUL_0667 PF06039 Malate:quinone oxidoreductase (Mqo) SMUL_0670 PF00583 Acetyltransferase (GNAT) family SMUL_0671 PF01471 Putative peptidoglycan binding domain SMUL_0671 PF03572 Peptidase family S41 SMUL_0671 PF17820 PDZ domain SMUL_0673 PF00391 PEP-utilising enzyme, mobile domain SMUL_0673 PF00224 Pyruvate kinase, barrel domain SMUL_0673 PF02887 Pyruvate kinase, alpha/beta domain SMUL_0674 PF00829 Ribosomal prokaryotic L21 protein SMUL_0675 PF01016 Ribosomal L27 protein SMUL_0676 PF01018 GTP1/OBG SMUL_0676 PF01926 50S ribosome-binding GTPase SMUL_0677 PF00696 Amino acid kinase family SMUL_0678 PF00551 Formyl transferase SMUL_0678 PF02911 Formyl transferase, C-terminal domain SMUL_0680 PF13614 AAA domain SMUL_0681 PF02195 ParB-like nuclease domain SMUL_0681 PF17762 HTH domain found in ParB protein SMUL_0683 PF00430 ATP synthase B/B' CF(0) SMUL_0684 PF00213 ATP synthase delta (OSCP) subunit SMUL_0685 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMUL_0685 PF00306 ATP synthase alpha/beta chain, C terminal domain SMUL_0685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMUL_0686 PF00231 ATP synthase SMUL_0687 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMUL_0687 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMUL_0688 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SMUL_0689 PF01618 MotA/TolQ/ExbB proton channel family SMUL_0690 PF02472 Biopolymer transport protein ExbD/TolR SMUL_0692 PF04052 TolB amino-terminal domain SMUL_0693 PF01389 OmpA-like transmembrane domain SMUL_0693 PF00691 OmpA family SMUL_0695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMUL_0696 PF00158 Sigma-54 interaction domain SMUL_0696 PF00072 Response regulator receiver domain SMUL_0696 PF02954 Bacterial regulatory protein, Fis family SMUL_0697 PF00698 Acyl transferase domain SMUL_0698 PF01048 Phosphorylase superfamily SMUL_0699 PF01171 PP-loop family SMUL_0701 PF01493 GXGXG motif SMUL_0701 PF01645 Conserved region in glutamate synthase SMUL_0701 PF04898 Glutamate synthase central domain SMUL_0701 PF00310 Glutamine amidotransferases class-II SMUL_0702 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMUL_0702 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_0704 PF17848 Acetyl-coA carboxylase zinc finger domain SMUL_0704 PF01039 Carboxyl transferase domain SMUL_0705 PF02590 Predicted SPOUT methyltransferase SMUL_0706 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMUL_0708 PF01207 Dihydrouridine synthase (Dus) SMUL_0712 PF04509 CheC-like family SMUL_0712 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMUL_0715 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_0717 PF01243 Pyridoxamine 5'-phosphate oxidase SMUL_0724 PF01964 Radical SAM ThiC family SMUL_0724 PF13667 ThiC-associated domain SMUL_0727 PF00324 Amino acid permease SMUL_0728 PF01925 Sulfite exporter TauE/SafE SMUL_0729 PF00005 ABC transporter SMUL_0729 PF17760 UvrA interaction domain SMUL_0729 PF17755 UvrA DNA-binding domain SMUL_0730 PF00375 Sodium:dicarboxylate symporter family SMUL_0731 PF00375 Sodium:dicarboxylate symporter family SMUL_0733 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMUL_0733 PF01367 5'-3' exonuclease, C-terminal SAM fold SMUL_0733 PF00476 DNA polymerase family A SMUL_0734 PF02659 Putative manganese efflux pump SMUL_0736 PF00226 DnaJ domain SMUL_0736 PF00684 DnaJ central domain SMUL_0736 PF01556 DnaJ C terminal domain SMUL_0741 PF01654 Cytochrome bd terminal oxidase subunit I SMUL_0742 PF02322 Cytochrome bd terminal oxidase subunit II SMUL_0743 PF00486 Transcriptional regulatory protein, C terminal SMUL_0743 PF00072 Response regulator receiver domain SMUL_0744 PF16750 Sensor domain of 2-component histidine kinase SMUL_0744 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0744 PF00672 HAMP domain SMUL_0745 PF13662 Toprim domain SMUL_0745 PF02132 RecR protein SMUL_0746 PF00563 EAL domain SMUL_0746 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0746 PF03707 Bacterial signalling protein N terminal repeat SMUL_0747 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0747 PF00672 HAMP domain SMUL_0747 PF12729 Four helix bundle sensory module for signal transduction SMUL_0748 PF13193 AMP-binding enzyme C-terminal domain SMUL_0748 PF00501 AMP-binding enzyme SMUL_0749 PF08501 Shikimate dehydrogenase substrate binding domain SMUL_0750 PF04715 Anthranilate synthase component I, N terminal region SMUL_0750 PF00425 chorismate binding enzyme SMUL_0753 PF00464 Serine hydroxymethyltransferase SMUL_0754 PF01336 OB-fold nucleic acid binding domain SMUL_0754 PF00152 tRNA synthetases class II (D, K and N) SMUL_0755 PF01475 Ferric uptake regulator family SMUL_0757 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0758 PF00437 Type II/IV secretion system protein SMUL_0759 PF02686 Glu-tRNAGln amidotransferase C subunit SMUL_0761 PF15437 Plasminogen-binding protein pgbA C-terminal SMUL_0763 PF03309 Type III pantothenate kinase SMUL_0764 PF01634 ATP phosphoribosyltransferase SMUL_0765 PF00072 Response regulator receiver domain SMUL_0766 PF00672 HAMP domain SMUL_0766 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0766 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0766 PF01627 Hpt domain SMUL_0766 PF00072 Response regulator receiver domain SMUL_0766 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMUL_0769 PF08459 UvrC Helix-hairpin-helix N-terminal SMUL_0769 PF02151 UvrB/uvrC motif SMUL_0769 PF01541 GIY-YIG catalytic domain SMUL_0772 PF00890 FAD binding domain SMUL_0773 PF03600 Citrate transporter SMUL_0774 PF02540 NAD synthase SMUL_0774 PF00958 GMP synthase C terminal domain SMUL_0774 PF00117 Glutamine amidotransferase class-I SMUL_0776 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SMUL_0776 PF02843 Phosphoribosylglycinamide synthetase, C domain SMUL_0776 PF02844 Phosphoribosylglycinamide synthetase, N domain SMUL_0779 PF00013 KH domain SMUL_0779 PF00575 S1 RNA binding domain SMUL_0779 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SMUL_0779 PF01138 3' exoribonuclease family, domain 1 SMUL_0779 PF03725 3' exoribonuclease family, domain 2 SMUL_0780 PF00137 ATP synthase subunit C SMUL_0783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0783 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0783 PF01627 Hpt domain SMUL_0783 PF00989 PAS fold SMUL_0783 PF00072 Response regulator receiver domain SMUL_0783 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMUL_0784 PF00072 Response regulator receiver domain SMUL_0784 PF00486 Transcriptional regulatory protein, C terminal SMUL_0786 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMUL_0789 PF00364 Biotin-requiring enzyme SMUL_0790 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SMUL_0791 PF01293 Phosphoenolpyruvate carboxykinase SMUL_0792 PF00206 Lyase SMUL_0792 PF14698 Argininosuccinate lyase C-terminal SMUL_0793 PF01230 HIT domain SMUL_0794 PF01409 tRNA synthetases class II core domain (F) SMUL_0794 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SMUL_0795 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SMUL_0795 PF01588 Putative tRNA binding domain SMUL_0795 PF03147 Ferredoxin-fold anticodon binding domain SMUL_0795 PF03484 tRNA synthetase B5 domain SMUL_0796 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMUL_0797 PF02401 LytB protein SMUL_0798 PF00575 S1 RNA binding domain SMUL_0800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMUL_0800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMUL_0800 PF01842 ACT domain SMUL_0802 PF13533 Biotin-lipoyl like SMUL_0803 PF00873 AcrB/AcrD/AcrF family SMUL_0804 PF00873 AcrB/AcrD/AcrF family SMUL_0807 PF09285 Elongation factor P, C-terminal SMUL_0807 PF08207 Elongation factor P (EF-P) KOW-like domain SMUL_0807 PF01132 Elongation factor P (EF-P) OB domain SMUL_0808 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0808 PF16591 Helical bimodular sensor domain SMUL_0808 PF00672 HAMP domain SMUL_0810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0810 PF16591 Helical bimodular sensor domain SMUL_0810 PF00672 HAMP domain SMUL_0818 PF03707 Bacterial signalling protein N terminal repeat SMUL_0818 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0818 PF00563 EAL domain SMUL_0824 PF08495 FIST N domain SMUL_0824 PF00563 EAL domain SMUL_0824 PF10442 FIST C domain SMUL_0824 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMUL_0826 PF02321 Outer membrane efflux protein SMUL_0827 PF00873 AcrB/AcrD/AcrF family SMUL_0828 PF00873 AcrB/AcrD/AcrF family SMUL_0829 PF00529 HlyD membrane-fusion protein of T1SS SMUL_0829 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMUL_0830 PF08447 PAS fold SMUL_0830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0831 PF00672 HAMP domain SMUL_0831 PF17200 Single Cache domain 2 SMUL_0831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0831 PF00672 HAMP domain SMUL_0831 PF17200 Single Cache domain 2 SMUL_0831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0833 PF14579 Helix-hairpin-helix motif SMUL_0833 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMUL_0833 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMUL_0833 PF02811 PHP domain SMUL_0834 PF00571 CBS domain SMUL_0836 PF07556 Protein of unknown function (DUF1538) SMUL_0837 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0839 PF02386 Cation transport protein SMUL_0840 PF02254 TrkA-N domain SMUL_0840 PF02080 TrkA-C domain SMUL_0843 PF01098 Cell cycle protein SMUL_0844 PF00849 RNA pseudouridylate synthase SMUL_0844 PF01479 S4 domain SMUL_0846 PF02390 Putative methyltransferase SMUL_0847 PF00005 ABC transporter SMUL_0850 PF00696 Amino acid kinase family SMUL_0851 PF01192 RNA polymerase Rpb6 SMUL_0852 PF04607 Region found in RelA / SpoT proteins SMUL_0852 PF02824 TGS domain SMUL_0852 PF13291 ACT domain SMUL_0853 PF00579 tRNA synthetases class I (W and Y) SMUL_0854 PF03060 Nitronate monooxygenase SMUL_0855 PF01520 N-acetylmuramoyl-L-alanine amidase SMUL_0858 PF02938 GAD domain SMUL_0858 PF00152 tRNA synthetases class II (D, K and N) SMUL_0858 PF01336 OB-fold nucleic acid binding domain SMUL_0859 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0859 PF00072 Response regulator receiver domain SMUL_0861 PF01513 ATP-NAD kinase SMUL_0862 PF13476 AAA domain SMUL_0863 PF02652 L-lactate permease SMUL_0864 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0865 PF01026 TatD related DNase SMUL_0866 PF05257 CHAP domain SMUL_0866 PF01476 LysM domain SMUL_0867 PF05036 Sporulation related domain SMUL_0867 PF03330 Lytic transglycolase SMUL_0868 PF00475 Imidazoleglycerol-phosphate dehydratase SMUL_0872 PF01926 50S ribosome-binding GTPase SMUL_0875 PF00905 Penicillin binding protein transpeptidase domain SMUL_0875 PF03717 Penicillin-binding Protein dimerisation domain SMUL_0877 PF02130 Uncharacterized protein family UPF0054 SMUL_0879 PF01588 Putative tRNA binding domain SMUL_0879 PF00133 tRNA synthetases class I (I, L, M and V) SMUL_0879 PF09334 tRNA synthetases class I (M) SMUL_0881 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SMUL_0886 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMUL_0887 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SMUL_0887 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMUL_0889 PF03264 NapC/NirT cytochrome c family, N-terminal region SMUL_0890 PF02335 Cytochrome c552 SMUL_0891 PF05140 ResB-like family SMUL_0891 PF01578 Cytochrome C assembly protein SMUL_0895 PF06821 Serine hydrolase SMUL_0898 PF04172 LrgB-like family SMUL_0901 PF01636 Phosphotransferase enzyme family SMUL_0903 PF09335 SNARE associated Golgi protein SMUL_0905 PF09335 SNARE associated Golgi protein SMUL_0906 PF13847 Methyltransferase domain SMUL_0907 PF00892 EamA-like transporter family SMUL_0908 PF00037 4Fe-4S binding domain SMUL_0913 PF01411 tRNA synthetases class II (A) SMUL_0913 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMUL_0913 PF02272 DHHA1 domain SMUL_0914 PF06100 MCRA family SMUL_0916 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0916 PF07730 Histidine kinase SMUL_0916 PF00672 HAMP domain SMUL_0917 PF00072 Response regulator receiver domain SMUL_0917 PF00196 Bacterial regulatory proteins, luxR family SMUL_0919 PF01040 UbiA prenyltransferase family SMUL_0920 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMUL_0920 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMUL_0922 PF00510 Cytochrome c oxidase subunit III SMUL_0923 PF00510 Cytochrome c oxidase subunit III SMUL_0923 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMUL_0931 PF06250 YhcG PDDEXK nuclease domain SMUL_0931 PF17761 DUF1016 N-terminal domain SMUL_0934 PF00384 Molybdopterin oxidoreductase SMUL_0934 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMUL_0934 PF01568 Molydopterin dinucleotide binding domain SMUL_0934 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0935 PF12800 4Fe-4S binding domain SMUL_0935 PF12838 4Fe-4S dicluster domain SMUL_0936 PF13237 4Fe-4S dicluster domain SMUL_0936 PF12801 4Fe-4S binding domain SMUL_0937 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SMUL_0938 PF12800 4Fe-4S binding domain SMUL_0938 PF13187 4Fe-4S dicluster domain SMUL_0938 PF00037 4Fe-4S binding domain SMUL_0941 PF01926 50S ribosome-binding GTPase SMUL_0941 PF06071 Protein of unknown function (DUF933) SMUL_0945 PF07660 Secretin and TonB N terminus short domain SMUL_0945 PF07715 TonB-dependent Receptor Plug Domain SMUL_0945 PF00593 TonB dependent receptor SMUL_0947 PF04542 Sigma-70 region 2 SMUL_0947 PF08281 Sigma-70, region 4 SMUL_0950 PF01568 Molydopterin dinucleotide binding domain SMUL_0950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_0950 PF00384 Molybdopterin oxidoreductase SMUL_0953 PF00072 Response regulator receiver domain SMUL_0953 PF00486 Transcriptional regulatory protein, C terminal SMUL_0955 PF00512 His Kinase A (phospho-acceptor) domain SMUL_0955 PF02743 Cache domain SMUL_0955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_0956 PF00034 Cytochrome c SMUL_0957 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMUL_0957 PF00355 Rieske [2Fe-2S] domain SMUL_0958 PF00032 Cytochrome b(C-terminal)/b6/petD SMUL_0958 PF00033 Cytochrome b/b6/petB SMUL_0960 PF08447 PAS fold SMUL_0960 PF13426 PAS domain SMUL_0960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0962 PF08495 FIST N domain SMUL_0962 PF10442 FIST C domain SMUL_0962 PF00990 Diguanylate cyclase, GGDEF domain SMUL_0962 PF00563 EAL domain SMUL_0963 PF02666 Phosphatidylserine decarboxylase SMUL_0964 PF03880 DbpA RNA binding domain SMUL_0964 PF00270 DEAD/DEAH box helicase SMUL_0964 PF00271 Helicase conserved C-terminal domain SMUL_0967 PF08348 YheO-like PAS domain SMUL_0967 PF13309 HTH domain SMUL_0968 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMUL_0968 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMUL_0971 PF13247 4Fe-4S dicluster domain SMUL_0973 PF08502 LeuA allosteric (dimerisation) domain SMUL_0973 PF00682 HMGL-like SMUL_0974 PF03473 MOSC domain SMUL_0975 PF01810 LysE type translocator SMUL_0976 PF11849 Domain of unknown function (DUF3369) SMUL_0977 PF00672 HAMP domain SMUL_0977 PF12729 Four helix bundle sensory module for signal transduction SMUL_0977 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_0979 PF01709 Transcriptional regulator SMUL_0981 PF16868 NMT1-like family SMUL_0984 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SMUL_0984 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SMUL_0986 PF00118 TCP-1/cpn60 chaperonin family SMUL_0987 PF00166 Chaperonin 10 Kd subunit SMUL_0990 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_0990 PF13359 DDE superfamily endonuclease SMUL_0991 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_0991 PF13359 DDE superfamily endonuclease SMUL_0993 PF13276 HTH-like domain SMUL_0993 PF13333 Integrase core domain SMUL_0993 PF00665 Integrase core domain SMUL_0994 PF01527 Transposase SMUL_0995 PF03062 MBOAT, membrane-bound O-acyltransferase family SMUL_0999 PF00665 Integrase core domain SMUL_0999 PF02796 Helix-turn-helix domain of resolvase SMUL_1000 PF01695 IstB-like ATP binding protein SMUL_1004 PF04174 A circularly permuted ATPgrasp SMUL_1005 PF08379 Bacterial transglutaminase-like N-terminal region SMUL_1005 PF01841 Transglutaminase-like superfamily SMUL_1009 PF08379 Bacterial transglutaminase-like N-terminal region SMUL_1009 PF01841 Transglutaminase-like superfamily SMUL_1011 PF14403 Circularly permuted ATP-grasp type 2 SMUL_1013 PF06738 Putative threonine/serine exporter SMUL_1014 PF06738 Putative threonine/serine exporter SMUL_1014 PF12821 Threonine/Serine exporter, ThrE SMUL_1015 PF01814 Hemerythrin HHE cation binding domain SMUL_1016 PF00403 Heavy-metal-associated domain SMUL_1017 PF01022 Bacterial regulatory protein, arsR family SMUL_1018 PF01810 LysE type translocator SMUL_1020 PF00464 Serine hydroxymethyltransferase SMUL_1021 PF02805 Metal binding domain of Ada SMUL_1021 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMUL_1021 PF12833 Helix-turn-helix domain SMUL_1021 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMUL_1022 PF02311 AraC-like ligand binding domain SMUL_1022 PF12833 Helix-turn-helix domain SMUL_1023 PF02627 Carboxymuconolactone decarboxylase family SMUL_1025 PF17202 Single cache domain 3 SMUL_1025 PF00672 HAMP domain SMUL_1025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1026 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1026 PF00672 HAMP domain SMUL_1026 PF02743 Cache domain SMUL_1027 PF02581 Thiamine monophosphate synthase SMUL_1030 PF03006 Haemolysin-III related SMUL_1032 PF01810 LysE type translocator SMUL_1033 PF02754 Cysteine-rich domain SMUL_1034 PF13183 4Fe-4S dicluster domain SMUL_1034 PF02589 LUD domain SMUL_1034 PF11870 Domain of unknown function (DUF3390) SMUL_1035 PF02589 LUD domain SMUL_1036 PF00892 EamA-like transporter family SMUL_1040 PF02811 PHP domain SMUL_1040 PF14579 Helix-hairpin-helix motif SMUL_1040 PF11490 DNA polymerase III polC-type N-terminus II SMUL_1040 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMUL_1040 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMUL_1040 PF00929 Exonuclease SMUL_1045 PF08267 Cobalamin-independent synthase, N-terminal domain SMUL_1045 PF01717 Cobalamin-independent synthase, Catalytic domain SMUL_1047 PF01435 Peptidase family M48 SMUL_1051 PF01739 CheR methyltransferase, SAM binding domain SMUL_1052 PF01339 CheB methylesterase SMUL_1052 PF00072 Response regulator receiver domain SMUL_1053 PF00883 Cytosol aminopeptidase family, catalytic domain SMUL_1053 PF02789 Cytosol aminopeptidase family, N-terminal domain SMUL_1054 PF09335 SNARE associated Golgi protein SMUL_1055 PF00291 Pyridoxal-phosphate dependent enzyme SMUL_1056 PF00156 Phosphoribosyl transferase domain SMUL_1058 PF02502 Ribose/Galactose Isomerase SMUL_1059 PF02163 Peptidase family M50 SMUL_1060 PF10502 Signal peptidase, peptidase S26 SMUL_1061 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SMUL_1061 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SMUL_1083 PF00202 Aminotransferase class-III SMUL_1086 PF04055 Radical SAM superfamily SMUL_1087 PF05193 Peptidase M16 inactive domain SMUL_1088 PF00271 Helicase conserved C-terminal domain SMUL_1088 PF04851 Type III restriction enzyme, res subunit SMUL_1094 PF02623 FliW protein SMUL_1095 PF13525 Outer membrane lipoprotein SMUL_1096 PF05362 Lon protease (S16) C-terminal proteolytic domain SMUL_1096 PF00004 ATPase family associated with various cellular activities (AAA) SMUL_1096 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMUL_1097 PF01084 Ribosomal protein S18 SMUL_1098 PF00436 Single-strand binding protein family SMUL_1099 PF01250 Ribosomal protein S6 SMUL_1100 PF06144 DNA polymerase III, delta subunit SMUL_1101 PF00773 RNB domain SMUL_1103 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SMUL_1103 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SMUL_1104 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMUL_1105 PF03776 Septum formation topological specificity factor MinE SMUL_1107 PF02481 DNA recombination-mediator protein A SMUL_1107 PF18255 DNA processing protein A sterile alpha motif domain SMUL_1108 PF01925 Sulfite exporter TauE/SafE SMUL_1109 PF04073 Aminoacyl-tRNA editing domain SMUL_1112 PF03315 Serine dehydratase beta chain SMUL_1112 PF03313 Serine dehydratase alpha chain SMUL_1113 PF03652 Holliday junction resolvase SMUL_1114 PF03458 UPF0126 domain SMUL_1115 PF00202 Aminotransferase class-III SMUL_1117 PF05690 Thiazole biosynthesis protein ThiG SMUL_1117 PF02597 ThiS family SMUL_1118 PF01648 4'-phosphopantetheinyl transferase superfamily SMUL_1119 PF03748 Flagellar basal body-associated protein FliL SMUL_1120 PF18073 Rubredoxin metal binding domain SMUL_1121 PF00448 SRP54-type protein, GTPase domain SMUL_1122 PF00578 AhpC/TSA family SMUL_1124 PF12072 Domain of unknown function (DUF3552) SMUL_1124 PF01966 HD domain SMUL_1125 PF00005 ABC transporter SMUL_1125 PF00664 ABC transporter transmembrane region SMUL_1127 PF09335 SNARE associated Golgi protein SMUL_1129 PF01758 Sodium Bile acid symporter family SMUL_1130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMUL_1133 PF00072 Response regulator receiver domain SMUL_1133 PF00486 Transcriptional regulatory protein, C terminal SMUL_1134 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1134 PF01627 Hpt domain SMUL_1134 PF00072 Response regulator receiver domain SMUL_1134 PF01584 CheW-like domain SMUL_1135 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1135 PF08448 PAS fold SMUL_1135 PF00563 EAL domain SMUL_1136 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMUL_1136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1136 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1137 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1139 PF04073 Aminoacyl-tRNA editing domain SMUL_1147 PF01867 CRISPR associated protein Cas1 SMUL_1172 PF00872 Transposase, Mutator family SMUL_1176 PF00263 Bacterial type II and III secretion system protein SMUL_1176 PF03958 Bacterial type II/III secretion system short domain SMUL_1181 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMUL_1181 PF00925 GTP cyclohydrolase II SMUL_1182 PF02254 TrkA-N domain SMUL_1182 PF00999 Sodium/hydrogen exchanger family SMUL_1183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1183 PF00672 HAMP domain SMUL_1183 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1184 PF00149 Calcineurin-like phosphoesterase SMUL_1185 PF04264 YceI-like domain SMUL_1188 PF00005 ABC transporter SMUL_1191 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SMUL_1192 PF01850 PIN domain SMUL_1196 PF00872 Transposase, Mutator family SMUL_1202 PF01327 Polypeptide deformylase SMUL_1203 PF03061 Thioesterase superfamily SMUL_1205 PF03167 Uracil DNA glycosylase superfamily SMUL_1208 PF00682 HMGL-like SMUL_1209 PF02579 Dinitrogenase iron-molybdenum cofactor SMUL_1209 PF04055 Radical SAM superfamily SMUL_1210 PF01966 HD domain SMUL_1210 PF00072 Response regulator receiver domain SMUL_1211 PF00072 Response regulator receiver domain SMUL_1211 PF00486 Transcriptional regulatory protein, C terminal SMUL_1212 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1212 PF10442 FIST C domain SMUL_1212 PF08495 FIST N domain SMUL_1212 PF00563 EAL domain SMUL_1213 PF00989 PAS fold SMUL_1213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1213 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1214 PF00072 Response regulator receiver domain SMUL_1214 PF00486 Transcriptional regulatory protein, C terminal SMUL_1215 PF00753 Metallo-beta-lactamase superfamily SMUL_1215 PF00258 Flavodoxin SMUL_1216 PF02579 Dinitrogenase iron-molybdenum cofactor SMUL_1220 PF02574 Homocysteine S-methyltransferase SMUL_1221 PF00171 Aldehyde dehydrogenase family SMUL_1222 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMUL_1222 PF00924 Mechanosensitive ion channel SMUL_1222 PF12795 Mechanosensitive ion channel porin domain SMUL_1223 PF00072 Response regulator receiver domain SMUL_1223 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1223 PF17149 Periplasmic sensor domain found in signal transduction proteins SMUL_1223 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1223 PF00672 HAMP domain SMUL_1223 PF01627 Hpt domain SMUL_1224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1224 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1224 PF09308 LuxQ, periplasmic SMUL_1224 PF00072 Response regulator receiver domain SMUL_1225 PF11849 Domain of unknown function (DUF3369) SMUL_1227 PF00072 Response regulator receiver domain SMUL_1229 PF02579 Dinitrogenase iron-molybdenum cofactor SMUL_1230 PF03270 Protein of unknown function, DUF269 SMUL_1232 PF03206 Nitrogen fixation protein NifW SMUL_1233 PF04319 NifZ domain SMUL_1235 PF00111 2Fe-2S iron-sulfur cluster binding domain SMUL_1236 PF04963 Sigma-54 factor, core binding domain SMUL_1236 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMUL_1236 PF04552 Sigma-54, DNA binding domain SMUL_1243 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SMUL_1245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMUL_1249 PF00905 Penicillin binding protein transpeptidase domain SMUL_1250 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1250 PF00563 EAL domain SMUL_1250 PF03707 Bacterial signalling protein N terminal repeat SMUL_1255 PF01863 Protein of unknown function DUF45 SMUL_1258 PF02567 Phenazine biosynthesis-like protein SMUL_1262 PF00561 alpha/beta hydrolase fold SMUL_1265 PF13536 Putative multidrug resistance efflux transporter SMUL_1267 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1267 PF17158 Membrane-associated sensor, integral membrane domain SMUL_1268 PF00392 Bacterial regulatory proteins, gntR family SMUL_1268 PF00155 Aminotransferase class I and II SMUL_1272 PF01063 Amino-transferase class IV SMUL_1275 PF00672 HAMP domain SMUL_1275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1276 PF00672 HAMP domain SMUL_1276 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1277 PF00384 Molybdopterin oxidoreductase SMUL_1277 PF01568 Molydopterin dinucleotide binding domain SMUL_1277 PF18364 Molybdopterin oxidoreductase N-terminal domain SMUL_1279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1279 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMUL_1281 PF00486 Transcriptional regulatory protein, C terminal SMUL_1281 PF00072 Response regulator receiver domain SMUL_1285 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SMUL_1291 PF00072 Response regulator receiver domain SMUL_1291 PF00486 Transcriptional regulatory protein, C terminal SMUL_1293 PF00583 Acetyltransferase (GNAT) family SMUL_1293 PF00795 Carbon-nitrogen hydrolase SMUL_1300 PF00486 Transcriptional regulatory protein, C terminal SMUL_1300 PF00072 Response regulator receiver domain SMUL_1301 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1301 PF13426 PAS domain SMUL_1301 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1301 PF00672 HAMP domain SMUL_1303 PF01699 Sodium/calcium exchanger protein SMUL_1304 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMUL_1304 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_1305 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SMUL_1306 PF13247 4Fe-4S dicluster domain SMUL_1307 PF00374 Nickel-dependent hydrogenase SMUL_1307 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMUL_1308 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMUL_1310 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMUL_1313 PF05977 Transmembrane secretion effector SMUL_1317 PF02589 LUD domain SMUL_1318 PF11870 Domain of unknown function (DUF3390) SMUL_1318 PF13183 4Fe-4S dicluster domain SMUL_1318 PF02589 LUD domain SMUL_1319 PF00155 Aminotransferase class I and II SMUL_1320 PF13533 Biotin-lipoyl like SMUL_1321 PF00005 ABC transporter SMUL_1323 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SMUL_1324 PF01850 PIN domain SMUL_1329 PF00248 Aldo/keto reductase family SMUL_1330 PF00890 FAD binding domain SMUL_1330 PF02910 Fumarate reductase flavoprotein C-term SMUL_1331 PF06988 NifT/FixU protein SMUL_1332 PF00158 Sigma-54 interaction domain SMUL_1332 PF13185 GAF domain SMUL_1332 PF02954 Bacterial regulatory protein, Fis family SMUL_1337 PF02769 AIR synthase related protein, C-terminal domain SMUL_1337 PF00586 AIR synthase related protein, N-terminal domain SMUL_1338 PF01142 tRNA pseudouridine synthase D (TruD) SMUL_1339 PF00999 Sodium/hydrogen exchanger family SMUL_1339 PF02080 TrkA-C domain SMUL_1339 PF02254 TrkA-N domain SMUL_1341 PF00563 EAL domain SMUL_1341 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1341 PF03707 Bacterial signalling protein N terminal repeat SMUL_1343 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1344 PF02581 Thiamine monophosphate synthase SMUL_1344 PF08543 Phosphomethylpyrimidine kinase SMUL_1346 PF02110 Hydroxyethylthiazole kinase family SMUL_1348 PF02535 ZIP Zinc transporter SMUL_1350 PF01966 HD domain SMUL_1351 PF00672 HAMP domain SMUL_1351 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1351 PF02743 Cache domain SMUL_1352 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1352 PF02743 Cache domain SMUL_1352 PF00672 HAMP domain SMUL_1353 PF00753 Metallo-beta-lactamase superfamily SMUL_1353 PF12706 Beta-lactamase superfamily domain SMUL_1355 PF00005 ABC transporter SMUL_1355 PF12848 ABC transporter SMUL_1355 PF16326 ABC transporter C-terminal domain SMUL_1356 PF00691 OmpA family SMUL_1356 PF13677 Membrane MotB of proton-channel complex MotA/MotB SMUL_1357 PF01618 MotA/TolQ/ExbB proton channel family SMUL_1358 PF08361 MAATS-type transcriptional repressor, C-terminal region SMUL_1358 PF00440 Bacterial regulatory proteins, tetR family SMUL_1359 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMUL_1360 PF00873 AcrB/AcrD/AcrF family SMUL_1361 PF02321 Outer membrane efflux protein SMUL_1364 PF00881 Nitroreductase family SMUL_1365 PF00881 Nitroreductase family SMUL_1366 PF03109 ABC1 family SMUL_1370 PF17092 Penicillin-binding protein OB-like domain SMUL_1370 PF00912 Transglycosylase SMUL_1370 PF00905 Penicillin binding protein transpeptidase domain SMUL_1375 PF00501 AMP-binding enzyme SMUL_1375 PF14535 AMP-binding enzyme C-terminal domain SMUL_1379 PF00474 Sodium:solute symporter family SMUL_1381 PF02561 Flagellar protein FliS SMUL_1382 PF02465 Flagellar hook-associated protein 2 N-terminus SMUL_1382 PF07195 Flagellar hook-associated protein 2 C-terminus SMUL_1386 PF02119 Flagellar P-ring protein SMUL_1390 PF07196 Flagellin hook IN motif SMUL_1390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMUL_1391 PF12911 N-terminal TM domain of oligopeptide transport permease C SMUL_1391 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_1393 PF00916 Sulfate permease family SMUL_1393 PF01740 STAS domain SMUL_1394 PF01361 Tautomerase enzyme SMUL_1395 PF00119 ATP synthase A chain SMUL_1398 PF02934 GatB/GatE catalytic domain SMUL_1398 PF02637 GatB domain SMUL_1399 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SMUL_1399 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SMUL_1400 PF00933 Glycosyl hydrolase family 3 N terminal domain SMUL_1402 PF01416 tRNA pseudouridine synthase SMUL_1404 PF06750 Bacterial Peptidase A24 N-terminal domain SMUL_1404 PF01478 Type IV leader peptidase family SMUL_1406 PF02441 Flavoprotein SMUL_1406 PF04127 DNA / pantothenate metabolism flavoprotein SMUL_1407 PF12804 MobA-like NTP transferase domain SMUL_1407 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_1408 PF00813 FliP family SMUL_1409 PF01263 Aldose 1-epimerase SMUL_1410 PF01638 HxlR-like helix-turn-helix SMUL_1411 PF02525 Flavodoxin-like fold SMUL_1413 PF05987 Bacterial protein of unknown function (DUF898) SMUL_1416 PF13194 Domain of unknown function (DUF4010) SMUL_1417 PF08497 Radical SAM N-terminal SMUL_1417 PF04055 Radical SAM superfamily SMUL_1418 PF00342 Phosphoglucose isomerase SMUL_1422 PF00374 Nickel-dependent hydrogenase SMUL_1423 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SMUL_1423 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMUL_1423 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMUL_1424 PF00374 Nickel-dependent hydrogenase SMUL_1425 PF01292 Prokaryotic cytochrome b561 SMUL_1426 PF01750 Hydrogenase maturation protease SMUL_1428 PF01300 Telomere recombination SMUL_1428 PF17788 HypF Kae1-like domain SMUL_1428 PF00708 Acylphosphatase SMUL_1428 PF07503 HypF finger SMUL_1429 PF08753 NikR C terminal nickel binding domain SMUL_1429 PF01402 Ribbon-helix-helix protein, copG family SMUL_1430 PF00593 TonB dependent receptor SMUL_1430 PF07715 TonB-dependent Receptor Plug Domain SMUL_1433 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMUL_1434 PF01455 HupF/HypC family SMUL_1435 PF01924 Hydrogenase formation hypA family SMUL_1436 PF00586 AIR synthase related protein, N-terminal domain SMUL_1436 PF02769 AIR synthase related protein, C-terminal domain SMUL_1437 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SMUL_1438 PF00583 Acetyltransferase (GNAT) family SMUL_1439 PF13419 Haloacid dehalogenase-like hydrolase SMUL_1442 PF03971 Monomeric isocitrate dehydrogenase SMUL_1443 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMUL_1443 PF00056 lactate/malate dehydrogenase, NAD binding domain SMUL_1444 PF00486 Transcriptional regulatory protein, C terminal SMUL_1444 PF00072 Response regulator receiver domain SMUL_1445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1445 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1445 PF01627 Hpt domain SMUL_1445 PF00989 PAS fold SMUL_1445 PF00072 Response regulator receiver domain SMUL_1445 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMUL_1447 PF00939 Sodium:sulfate symporter transmembrane region SMUL_1448 PF02754 Cysteine-rich domain SMUL_1449 PF02913 FAD linked oxidases, C-terminal domain SMUL_1449 PF01565 FAD binding domain SMUL_1450 PF08442 ATP-grasp domain SMUL_1450 PF00549 CoA-ligase SMUL_1451 PF02629 CoA binding domain SMUL_1451 PF00549 CoA-ligase SMUL_1453 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SMUL_1453 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SMUL_1453 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SMUL_1454 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMUL_1454 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMUL_1454 PF00205 Thiamine pyrophosphate enzyme, central domain SMUL_1459 PF10415 Fumarase C C-terminus SMUL_1459 PF00206 Lyase SMUL_1462 PF01914 MarC family integral membrane protein SMUL_1466 PF01168 Alanine racemase, N-terminal domain SMUL_1467 PF17820 PDZ domain SMUL_1467 PF02163 Peptidase family M50 SMUL_1468 PF01066 CDP-alcohol phosphatidyltransferase SMUL_1470 PF00701 Dihydrodipicolinate synthetase family SMUL_1472 PF01180 Dihydroorotate dehydrogenase SMUL_1473 PF00005 ABC transporter SMUL_1473 PF00664 ABC transporter transmembrane region SMUL_1474 PF09190 DALR domain SMUL_1474 PF01406 tRNA synthetases class I (C) catalytic domain SMUL_1475 PF03023 Lipid II flippase MurJ SMUL_1477 PF01330 RuvA N terminal domain SMUL_1477 PF07499 RuvA, C-terminal domain SMUL_1478 PF01820 D-ala D-ala ligase N-terminus SMUL_1478 PF07478 D-ala D-ala ligase C-terminus SMUL_1481 PF00708 Acylphosphatase SMUL_1482 PF08245 Mur ligase middle domain SMUL_1482 PF02875 Mur ligase family, glutamate ligase domain SMUL_1482 PF01225 Mur ligase family, catalytic domain SMUL_1483 PF07085 DRTGG domain SMUL_1483 PF01515 Phosphate acetyl/butaryl transferase SMUL_1484 PF00871 Acetokinase family SMUL_1486 PF02107 Flagellar L-ring protein SMUL_1488 PF00482 Type II secretion system (T2SS), protein F SMUL_1489 PF00437 Type II/IV secretion system protein SMUL_1492 PF00263 Bacterial type II and III secretion system protein SMUL_1492 PF03958 Bacterial type II/III secretion system short domain SMUL_1496 PF01926 50S ribosome-binding GTPase SMUL_1496 PF07650 KH domain SMUL_1497 PF10431 C-terminal, D2-small domain, of ClpB protein SMUL_1497 PF07724 AAA domain (Cdc48 subfamily) SMUL_1498 PF00227 Proteasome subunit SMUL_1499 PF01281 Ribosomal protein L9, N-terminal domain SMUL_1499 PF03948 Ribosomal protein L9, C-terminal domain SMUL_1501 PF00764 Arginosuccinate synthase SMUL_1502 PF01479 S4 domain SMUL_1503 PF00591 Glycosyl transferase family, a/b domain SMUL_1503 PF02885 Glycosyl transferase family, helical bundle domain SMUL_1504 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMUL_1505 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMUL_1505 PF00005 ABC transporter SMUL_1506 PF04552 Sigma-54, DNA binding domain SMUL_1506 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMUL_1506 PF04963 Sigma-54 factor, core binding domain SMUL_1508 PF04377 Arginine-tRNA-protein transferase, C terminus SMUL_1508 PF04376 Arginine-tRNA-protein transferase, N terminus SMUL_1511 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SMUL_1515 PF01966 HD domain SMUL_1519 PF00672 HAMP domain SMUL_1519 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1519 PF02743 Cache domain SMUL_1520 PF00072 Response regulator receiver domain SMUL_1523 PF00158 Sigma-54 interaction domain SMUL_1523 PF00072 Response regulator receiver domain SMUL_1523 PF02954 Bacterial regulatory protein, Fis family SMUL_1526 PF14537 Cytochrome c3 SMUL_1526 PF00890 FAD binding domain SMUL_1527 PF00925 GTP cyclohydrolase II SMUL_1528 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMUL_1528 PF00925 GTP cyclohydrolase II SMUL_1529 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMUL_1534 PF00989 PAS fold SMUL_1534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1534 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1535 PF01966 HD domain SMUL_1535 PF00072 Response regulator receiver domain SMUL_1538 PF00072 Response regulator receiver domain SMUL_1538 PF13426 PAS domain SMUL_1538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1539 PF00072 Response regulator receiver domain SMUL_1539 PF00486 Transcriptional regulatory protein, C terminal SMUL_1541 PF12800 4Fe-4S binding domain SMUL_1541 PF12838 4Fe-4S dicluster domain SMUL_1543 PF03186 CobD/Cbib protein SMUL_1544 PF00155 Aminotransferase class I and II SMUL_1545 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SMUL_1546 PF07685 CobB/CobQ-like glutamine amidotransferase domain SMUL_1549 PF02654 Cobalamin-5-phosphate synthase SMUL_1550 PF00300 Histidine phosphatase superfamily (branch 1) SMUL_1551 PF06180 Cobalt chelatase (CbiK) SMUL_1553 PF00005 ABC transporter SMUL_1555 PF02570 Precorrin-8X methylmutase SMUL_1556 PF01888 CbiD SMUL_1558 PF05175 Methyltransferase small domain SMUL_1559 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMUL_1560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMUL_1561 PF11761 Cobalamin biosynthesis central region SMUL_1561 PF11760 Cobalamin synthesis G N-terminal SMUL_1561 PF01890 Cobalamin synthesis G C-terminus SMUL_1562 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMUL_1562 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SMUL_1564 PF02571 Precorrin-6x reductase CbiJ/CobK SMUL_1565 PF00664 ABC transporter transmembrane region SMUL_1565 PF00005 ABC transporter SMUL_1566 PF07685 CobB/CobQ-like glutamine amidotransferase domain SMUL_1566 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMUL_1568 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMUL_1568 PF10414 Sirohaem synthase dimerisation region SMUL_1568 PF14824 Sirohaem biosynthesis protein central SMUL_1569 PF18665 Tetracyclin repressor-like, C-terminal domain SMUL_1569 PF00440 Bacterial regulatory proteins, tetR family SMUL_1570 PF01695 IstB-like ATP binding protein SMUL_1571 PF00665 Integrase core domain SMUL_1571 PF02796 Helix-turn-helix domain of resolvase SMUL_1588 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_1588 PF13359 DDE superfamily endonuclease SMUL_1589 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_1589 PF13359 DDE superfamily endonuclease SMUL_1595 PF13356 Arm DNA-binding domain SMUL_1595 PF00589 Phage integrase family SMUL_1597 PF00216 Bacterial DNA-binding protein SMUL_1598 PF00700 Bacterial flagellin C-terminal helical region SMUL_1598 PF00669 Bacterial flagellin N-terminal helical region SMUL_1599 PF09397 Ftsk gamma domain SMUL_1599 PF01580 FtsK/SpoIIIE family SMUL_1599 PF17854 FtsK alpha domain SMUL_1600 PF06434 Aconitate hydratase 2 N-terminus SMUL_1600 PF00330 Aconitase family (aconitate hydratase) SMUL_1600 PF11791 Aconitate B N-terminal domain SMUL_1601 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMUL_1602 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SMUL_1602 PF02896 PEP-utilising enzyme, TIM barrel domain SMUL_1602 PF00391 PEP-utilising enzyme, mobile domain SMUL_1603 PF07690 Major Facilitator Superfamily SMUL_1607 PF05958 tRNA (Uracil-5-)-methyltransferase SMUL_1608 PF02743 Cache domain SMUL_1608 PF00672 HAMP domain SMUL_1608 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1609 PF13380 CoA binding domain SMUL_1610 PF13291 ACT domain SMUL_1610 PF00291 Pyridoxal-phosphate dependent enzyme SMUL_1612 PF00005 ABC transporter SMUL_1613 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_1614 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_1615 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMUL_1616 PF01474 Class-II DAHP synthetase family SMUL_1619 PF09335 SNARE associated Golgi protein SMUL_1621 PF00005 ABC transporter SMUL_1621 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMUL_1622 PF00171 Aldehyde dehydrogenase family SMUL_1623 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_1625 PF05175 Methyltransferase small domain SMUL_1626 PF03692 Putative zinc- or iron-chelating domain SMUL_1628 PF00218 Indole-3-glycerol phosphate synthase SMUL_1632 PF13190 PDGLE domain SMUL_1632 PF01891 Cobalt uptake substrate-specific transmembrane region SMUL_1635 PF00005 ABC transporter SMUL_1636 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMUL_1637 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SMUL_1640 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_1642 PF02541 Ppx/GppA phosphatase family SMUL_1643 PF00205 Thiamine pyrophosphate enzyme, central domain SMUL_1643 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMUL_1643 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMUL_1644 PF10369 Small subunit of acetolactate synthase SMUL_1645 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SMUL_1645 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_1647 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_1647 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMUL_1648 PF00155 Aminotransferase class I and II SMUL_1649 PF00148 Nitrogenase component 1 type Oxidoreductase SMUL_1650 PF00158 Sigma-54 interaction domain SMUL_1650 PF02954 Bacterial regulatory protein, Fis family SMUL_1650 PF01590 GAF domain SMUL_1652 PF00148 Nitrogenase component 1 type Oxidoreductase SMUL_1653 PF03139 Vanadium/alternative nitrogenase delta subunit SMUL_1654 PF00148 Nitrogenase component 1 type Oxidoreductase SMUL_1655 PF06426 Serine acetyltransferase, N-terminal SMUL_1655 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_1656 PF17810 Arginine decarboxylase helical bundle domain SMUL_1656 PF17944 Arginine decarboxylase C-terminal helical extension SMUL_1656 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMUL_1657 PF03129 Anticodon binding domain SMUL_1657 PF13393 Histidyl-tRNA synthetase SMUL_1658 PF02223 Thymidylate kinase SMUL_1659 PF01467 Cytidylyltransferase-like SMUL_1660 PF02441 Flavoprotein SMUL_1663 PF16591 Helical bimodular sensor domain SMUL_1663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1663 PF00672 HAMP domain SMUL_1664 PF00994 Probable molybdopterin binding domain SMUL_1664 PF03454 MoeA C-terminal region (domain IV) SMUL_1664 PF03453 MoeA N-terminal region (domain I and II) SMUL_1665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMUL_1672 PF01883 Iron-sulfur cluster assembly protein SMUL_1672 PF10609 NUBPL iron-transfer P-loop NTPase SMUL_1674 PF02001 Protein of unknown function DUF134 SMUL_1675 PF00731 AIR carboxylase SMUL_1676 PF02540 NAD synthase SMUL_1677 PF01969 Protein of unknown function DUF111 SMUL_1678 PF09861 Lactate racemase N-terminal domain SMUL_1679 PF05683 Fumarase C-terminus SMUL_1679 PF05681 Fumarate hydratase (Fumerase) SMUL_1680 PF05681 Fumarate hydratase (Fumerase) SMUL_1680 PF05683 Fumarase C-terminus SMUL_1681 PF03605 Anaerobic c4-dicarboxylate membrane transporter SMUL_1682 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1682 PF00072 Response regulator receiver domain SMUL_1682 PF09308 LuxQ, periplasmic SMUL_1683 PF00072 Response regulator receiver domain SMUL_1683 PF00486 Transcriptional regulatory protein, C terminal SMUL_1688 PF18644 Phage integrase SAM-like domain SMUL_1688 PF00589 Phage integrase family SMUL_1689 PF01702 Queuine tRNA-ribosyltransferase SMUL_1691 PF01761 3-dehydroquinate synthase SMUL_1693 PF04055 Radical SAM superfamily SMUL_1693 PF00919 Uncharacterized protein family UPF0004 SMUL_1694 PF00004 ATPase family associated with various cellular activities (AAA) SMUL_1694 PF06480 FtsH Extracellular SMUL_1694 PF01434 Peptidase family M41 SMUL_1694 PF17862 AAA+ lid domain SMUL_1698 PF00296 Luciferase-like monooxygenase SMUL_1701 PF08279 HTH domain SMUL_1701 PF13280 WYL domain SMUL_1702 PF01479 S4 domain SMUL_1702 PF00849 RNA pseudouridylate synthase SMUL_1703 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMUL_1703 PF00205 Thiamine pyrophosphate enzyme, central domain SMUL_1703 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMUL_1705 PF04960 Glutaminase SMUL_1707 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SMUL_1707 PF12833 Helix-turn-helix domain SMUL_1709 PF08359 YsiA-like protein, C-terminal region SMUL_1709 PF00440 Bacterial regulatory proteins, tetR family SMUL_1712 PF00873 AcrB/AcrD/AcrF family SMUL_1715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_1715 PF16591 Helical bimodular sensor domain SMUL_1715 PF00672 HAMP domain SMUL_1736 PF01131 DNA topoisomerase SMUL_1736 PF01751 Toprim domain SMUL_1736 PF01396 Topoisomerase DNA binding C4 zinc finger SMUL_1736 PF13368 Topoisomerase C-terminal repeat SMUL_1740 PF00817 impB/mucB/samB family SMUL_1740 PF11799 impB/mucB/samB family C-terminal domain SMUL_1740 PF11798 IMS family HHH motif SMUL_1762 PF00872 Transposase, Mutator family SMUL_1773 PF00589 Phage integrase family SMUL_1773 PF18644 Phage integrase SAM-like domain SMUL_1778 PF00216 Bacterial DNA-binding protein SMUL_1787 PF02086 D12 class N6 adenine-specific DNA methyltransferase SMUL_1799 PF01223 DNA/RNA non-specific endonuclease SMUL_1802 PF03824 High-affinity nickel-transport protein SMUL_1819 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMUL_1832 PF00436 Single-strand binding protein family SMUL_1839 PF00145 C-5 cytosine-specific DNA methylase SMUL_1875 PF07715 TonB-dependent Receptor Plug Domain SMUL_1875 PF00593 TonB dependent receptor SMUL_1897 PF00589 Phage integrase family SMUL_1897 PF18644 Phage integrase SAM-like domain SMUL_1899 PF02915 Rubrerythrin SMUL_1901 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SMUL_1902 PF03900 Porphobilinogen deaminase, C-terminal domain SMUL_1902 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SMUL_1905 PF03129 Anticodon binding domain SMUL_1905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMUL_1905 PF04073 Aminoacyl-tRNA editing domain SMUL_1906 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SMUL_1906 PF01488 Shikimate / quinate 5-dehydrogenase SMUL_1906 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SMUL_1907 PF00348 Polyprenyl synthetase SMUL_1910 PF01053 Cys/Met metabolism PLP-dependent enzyme SMUL_1911 PF02082 Transcriptional regulator SMUL_1912 PF00291 Pyridoxal-phosphate dependent enzyme SMUL_1913 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1914 PF08264 Anticodon-binding domain of tRNA SMUL_1914 PF00133 tRNA synthetases class I (I, L, M and V) SMUL_1914 PF10458 Valyl tRNA synthetase tRNA binding arm SMUL_1915 PF03480 Bacterial extracellular solute-binding protein, family 7 SMUL_1916 PF00994 Probable molybdopterin binding domain SMUL_1918 PF00815 Histidinol dehydrogenase SMUL_1920 PF01116 Fructose-bisphosphate aldolase class-II SMUL_1922 PF00730 HhH-GPD superfamily base excision DNA repair protein SMUL_1922 PF00633 Helix-hairpin-helix motif SMUL_1924 PF01546 Peptidase family M20/M25/M40 SMUL_1924 PF07687 Peptidase dimerisation domain SMUL_1926 PF08003 Protein of unknown function (DUF1698) SMUL_1929 PF02540 NAD synthase SMUL_1930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMUL_1931 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SMUL_1932 PF00696 Amino acid kinase family SMUL_1933 PF00291 Pyridoxal-phosphate dependent enzyme SMUL_1934 PF02348 Cytidylyltransferase SMUL_1937 PF11412 Disulphide bond corrector protein DsbC SMUL_1937 PF02683 Cytochrome C biogenesis protein transmembrane region SMUL_1938 PF03976 Polyphosphate kinase 2 (PPK2) SMUL_1939 PF00012 Hsp70 protein SMUL_1940 PF01025 GrpE SMUL_1944 PF00312 Ribosomal protein S15 SMUL_1946 PF00771 FHIPEP family SMUL_1949 PF13649 Methyltransferase domain SMUL_1950 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1951 PF06574 FAD synthetase SMUL_1951 PF01687 Riboflavin kinase SMUL_1952 PF01479 S4 domain SMUL_1952 PF00163 Ribosomal protein S4/S9 N-terminal domain SMUL_1953 PF00533 BRCA1 C Terminus (BRCT) domain SMUL_1953 PF01653 NAD-dependent DNA ligase adenylation domain SMUL_1953 PF03120 NAD-dependent DNA ligase OB-fold domain SMUL_1953 PF12826 Helix-hairpin-helix motif SMUL_1954 PF01925 Sulfite exporter TauE/SafE SMUL_1956 PF00809 Pterin binding enzyme SMUL_1957 PF12169 DNA polymerase III subunits gamma and tau domain III SMUL_1959 PF01842 ACT domain SMUL_1959 PF13840 ACT domain SMUL_1959 PF00696 Amino acid kinase family SMUL_1960 PF00293 NUDIX domain SMUL_1961 PF06969 HemN C-terminal domain SMUL_1961 PF04055 Radical SAM superfamily SMUL_1962 PF02254 TrkA-N domain SMUL_1962 PF00999 Sodium/hydrogen exchanger family SMUL_1963 PF13411 MerR HTH family regulatory protein SMUL_1964 PF00684 DnaJ central domain SMUL_1964 PF01556 DnaJ C terminal domain SMUL_1964 PF00226 DnaJ domain SMUL_1965 PF13180 PDZ domain SMUL_1966 PF00486 Transcriptional regulatory protein, C terminal SMUL_1966 PF00072 Response regulator receiver domain SMUL_1967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_1967 PF00512 His Kinase A (phospho-acceptor) domain SMUL_1970 PF07516 SecA Wing and Scaffold domain SMUL_1970 PF00271 Helicase conserved C-terminal domain SMUL_1970 PF07517 SecA DEAD-like domain SMUL_1970 PF02810 SEC-C motif SMUL_1970 PF01043 SecA preprotein cross-linking domain SMUL_1972 PF00563 EAL domain SMUL_1972 PF03707 Bacterial signalling protein N terminal repeat SMUL_1972 PF00990 Diguanylate cyclase, GGDEF domain SMUL_1973 PF06965 Na+/H+ antiporter 1 SMUL_1974 PF10396 GTP-binding protein TrmE N-terminus SMUL_1974 PF12631 MnmE helical domain SMUL_1974 PF01926 50S ribosome-binding GTPase SMUL_1976 PF14849 YidC periplasmic domain SMUL_1976 PF02096 60Kd inner membrane protein SMUL_1977 PF01809 Putative membrane protein insertion efficiency factor SMUL_1978 PF00550 Phosphopantetheine attachment site SMUL_1978 PF00668 Condensation domain SMUL_1978 PF13193 AMP-binding enzyme C-terminal domain SMUL_1978 PF00501 AMP-binding enzyme SMUL_1979 PF13941 MutL protein SMUL_1980 PF06368 Methylaspartate mutase E chain (MutE) SMUL_1981 PF02310 B12 binding domain SMUL_2004 PF03737 Aldolase/RraA SMUL_2007 PF17871 AAA lid domain SMUL_2007 PF02861 Clp amino terminal domain, pathogenicity island component SMUL_2007 PF10431 C-terminal, D2-small domain, of ClpB protein SMUL_2007 PF00004 ATPase family associated with various cellular activities (AAA) SMUL_2007 PF07724 AAA domain (Cdc48 subfamily) SMUL_2008 PF03572 Peptidase family S41 SMUL_2008 PF13180 PDZ domain SMUL_2009 PF01259 SAICAR synthetase SMUL_2010 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SMUL_2013 PF01553 Acyltransferase SMUL_2014 PF00183 Hsp90 protein SMUL_2015 PF13419 Haloacid dehalogenase-like hydrolase SMUL_2019 PF03190 Protein of unknown function, DUF255 SMUL_2020 PF00581 Rhodanese-like domain SMUL_2021 PF13361 UvrD-like helicase C-terminal domain SMUL_2021 PF00580 UvrD/REP helicase N-terminal domain SMUL_2028 PF05970 PIF1-like helicase SMUL_2028 PF02689 Helicase SMUL_2033 PF08534 Redoxin SMUL_2035 PF00403 Heavy-metal-associated domain SMUL_2036 PF00403 Heavy-metal-associated domain SMUL_2037 PF01966 HD domain SMUL_2038 PF02646 RmuC family SMUL_2040 PF01795 MraW methylase family SMUL_2041 PF00202 Aminotransferase class-III SMUL_2042 PF13145 PPIC-type PPIASE domain SMUL_2043 PF02491 SHS2 domain inserted in FTSA SMUL_2044 PF00091 Tubulin/FtsZ family, GTPase domain SMUL_2044 PF12327 FtsZ family, C-terminal domain SMUL_2046 PF17827 PrmC N-terminal domain SMUL_2046 PF05175 Methyltransferase small domain SMUL_2047 PF01435 Peptidase family M48 SMUL_2048 PF12729 Four helix bundle sensory module for signal transduction SMUL_2048 PF00672 HAMP domain SMUL_2048 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2050 PF00672 HAMP domain SMUL_2052 PF01883 Iron-sulfur cluster assembly protein SMUL_2055 PF02142 MGS-like domain SMUL_2055 PF01808 AICARFT/IMPCHase bienzyme SMUL_2056 PF02600 Disulfide bond formation protein DsbB SMUL_2058 PF03061 Thioesterase superfamily SMUL_2059 PF00226 DnaJ domain SMUL_2059 PF05099 Tellurite resistance protein TerB SMUL_2060 PF00155 Aminotransferase class I and II SMUL_2064 PF02769 AIR synthase related protein, C-terminal domain SMUL_2064 PF00586 AIR synthase related protein, N-terminal domain SMUL_2064 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SMUL_2065 PF03707 Bacterial signalling protein N terminal repeat SMUL_2065 PF00563 EAL domain SMUL_2065 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2066 PF02416 mttA/Hcf106 family SMUL_2067 PF00902 Sec-independent protein translocase protein (TatC) SMUL_2068 PF02547 Queuosine biosynthesis protein SMUL_2072 PF00872 Transposase, Mutator family SMUL_2074 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SMUL_2076 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2079 PF00072 Response regulator receiver domain SMUL_2080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2080 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2080 PF01627 Hpt domain SMUL_2080 PF00072 Response regulator receiver domain SMUL_2080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMUL_2080 PF00672 HAMP domain SMUL_2081 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMUL_2081 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2081 PF00672 HAMP domain SMUL_2081 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2081 PF00072 Response regulator receiver domain SMUL_2081 PF01627 Hpt domain SMUL_2082 PF10996 Beta-Casp domain SMUL_2082 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMUL_2082 PF00753 Metallo-beta-lactamase superfamily SMUL_2083 PF00501 AMP-binding enzyme SMUL_2085 PF07715 TonB-dependent Receptor Plug Domain SMUL_2085 PF00593 TonB dependent receptor SMUL_2086 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2086 PF02702 Osmosensitive K+ channel His kinase sensor domain SMUL_2086 PF13492 GAF domain SMUL_2086 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2086 PF13493 Domain of unknown function (DUF4118) SMUL_2087 PF00072 Response regulator receiver domain SMUL_2087 PF00486 Transcriptional regulatory protein, C terminal SMUL_2088 PF02386 Cation transport protein SMUL_2089 PF02080 TrkA-C domain SMUL_2089 PF02254 TrkA-N domain SMUL_2090 PF01641 SelR domain SMUL_2091 PF03471 Transporter associated domain SMUL_2091 PF00571 CBS domain SMUL_2091 PF01595 Cyclin M transmembrane N-terminal domain SMUL_2093 PF12804 MobA-like NTP transferase domain SMUL_2094 PF02625 XdhC and CoxI family SMUL_2094 PF13478 XdhC Rossmann domain SMUL_2095 PF14535 AMP-binding enzyme C-terminal domain SMUL_2095 PF00501 AMP-binding enzyme SMUL_2096 PF04055 Radical SAM superfamily SMUL_2096 PF13186 Iron-sulfur cluster-binding domain SMUL_2098 PF01209 ubiE/COQ5 methyltransferase family SMUL_2100 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMUL_2100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMUL_2100 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMUL_2101 PF01799 [2Fe-2S] binding domain SMUL_2101 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMUL_2101 PF00111 2Fe-2S iron-sulfur cluster binding domain SMUL_2101 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMUL_2102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2102 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2102 PF13755 Sensor N-terminal transmembrane domain SMUL_2102 PF13756 Stimulus-sensing domain SMUL_2102 PF00672 HAMP domain SMUL_2103 PF00486 Transcriptional regulatory protein, C terminal SMUL_2103 PF00072 Response regulator receiver domain SMUL_2103 PF01627 Hpt domain SMUL_2105 PF01292 Prokaryotic cytochrome b561 SMUL_2108 PF00486 Transcriptional regulatory protein, C terminal SMUL_2108 PF00072 Response regulator receiver domain SMUL_2110 PF16916 Dimerisation domain of Zinc Transporter SMUL_2110 PF01545 Cation efflux family SMUL_2114 PF00593 TonB dependent receptor SMUL_2114 PF07715 TonB-dependent Receptor Plug Domain SMUL_2116 PF00924 Mechanosensitive ion channel SMUL_2123 PF02146 Sir2 family SMUL_2124 PF18764 Nitrous oxide reductase propeller repeat SMUL_2124 PF18793 Nitrous oxide reductase propeller repeat 2 SMUL_2124 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMUL_2127 PF02146 Sir2 family SMUL_2129 PF02574 Homocysteine S-methyltransferase SMUL_2129 PF02310 B12 binding domain SMUL_2129 PF02607 B12 binding domain SMUL_2129 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMUL_2129 PF00809 Pterin binding enzyme SMUL_2130 PF03781 Sulfatase-modifying factor enzyme 1 SMUL_2131 PF13458 Periplasmic binding protein SMUL_2132 PF02743 Cache domain SMUL_2132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2132 PF00672 HAMP domain SMUL_2133 PF01810 LysE type translocator SMUL_2134 PF00892 EamA-like transporter family SMUL_2135 PF00884 Sulfatase SMUL_2136 PF00909 Ammonium Transporter Family SMUL_2137 PF00543 Nitrogen regulatory protein P-II SMUL_2139 PF12102 Domain of unknown function (DUF3578) SMUL_2139 PF07728 AAA domain (dynein-related subfamily) SMUL_2142 PF01966 HD domain SMUL_2142 PF00072 Response regulator receiver domain SMUL_2143 PF02092 Glycyl-tRNA synthetase beta subunit SMUL_2146 PF00484 Carbonic anhydrase SMUL_2147 PF06865 Pyrimidine/purine nucleoside phosphorylase SMUL_2148 PF03707 Bacterial signalling protein N terminal repeat SMUL_2148 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2148 PF00563 EAL domain SMUL_2151 PF00588 SpoU rRNA Methylase family SMUL_2152 PF01842 ACT domain SMUL_2152 PF00551 Formyl transferase SMUL_2153 PF13735 tRNA nucleotidyltransferase domain 2 putative SMUL_2153 PF12627 Probable RNA and SrmB- binding site of polymerase A SMUL_2153 PF01743 Poly A polymerase head domain SMUL_2156 PF00180 Isocitrate/isopropylmalate dehydrogenase SMUL_2157 PF00694 Aconitase C-terminal domain SMUL_2158 PF00005 ABC transporter SMUL_2159 PF00873 AcrB/AcrD/AcrF family SMUL_2162 PF03372 Endonuclease/Exonuclease/phosphatase family SMUL_2165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2165 PF16591 Helical bimodular sensor domain SMUL_2165 PF00672 HAMP domain SMUL_2166 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SMUL_2166 PF09297 NADH pyrophosphatase zinc ribbon domain SMUL_2166 PF00293 NUDIX domain SMUL_2167 PF00174 Oxidoreductase molybdopterin binding domain SMUL_2168 PF01794 Ferric reductase like transmembrane component SMUL_2169 PF03264 NapC/NirT cytochrome c family, N-terminal region SMUL_2170 PF02335 Cytochrome c552 SMUL_2171 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2171 PF00672 HAMP domain SMUL_2171 PF02743 Cache domain SMUL_2172 PF00672 HAMP domain SMUL_2172 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2172 PF18698 Histidine kinase sensor domain SMUL_2173 PF00486 Transcriptional regulatory protein, C terminal SMUL_2173 PF00072 Response regulator receiver domain SMUL_2175 PF00672 HAMP domain SMUL_2175 PF02743 Cache domain SMUL_2175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2176 PF00672 HAMP domain SMUL_2176 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2176 PF02743 Cache domain SMUL_2177 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SMUL_2179 PF08448 PAS fold SMUL_2179 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2181 PF09962 Uncharacterized conserved protein (DUF2196) SMUL_2182 PF00270 DEAD/DEAH box helicase SMUL_2182 PF00271 Helicase conserved C-terminal domain SMUL_2182 PF16124 RecQ zinc-binding SMUL_2182 PF09382 RQC domain SMUL_2182 PF00570 HRDC domain SMUL_2185 PF00271 Helicase conserved C-terminal domain SMUL_2185 PF00270 DEAD/DEAH box helicase SMUL_2187 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2187 PF13426 PAS domain SMUL_2187 PF00563 EAL domain SMUL_2188 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2188 PF08521 Two-component sensor kinase N-terminal SMUL_2189 PF00486 Transcriptional regulatory protein, C terminal SMUL_2189 PF00072 Response regulator receiver domain SMUL_2195 PF16177 Acetyl-coenzyme A synthetase N-terminus SMUL_2195 PF00501 AMP-binding enzyme SMUL_2195 PF13193 AMP-binding enzyme C-terminal domain SMUL_2197 PF00285 Citrate synthase, C-terminal domain SMUL_2198 PF03972 MmgE/PrpD family SMUL_2200 PF08274 PhnA Zinc-Ribbon SMUL_2200 PF03831 PhnA domain SMUL_2202 PF03591 AzlC protein SMUL_2204 PF00460 Flagella basal body rod protein SMUL_2204 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMUL_2205 PF00460 Flagella basal body rod protein SMUL_2205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMUL_2206 PF00140 Sigma-70 factor, region 1.2 SMUL_2206 PF04542 Sigma-70 region 2 SMUL_2206 PF04539 Sigma-70 region 3 SMUL_2206 PF04545 Sigma-70, region 4 SMUL_2208 PF01638 HxlR-like helix-turn-helix SMUL_2211 PF13193 AMP-binding enzyme C-terminal domain SMUL_2211 PF00501 AMP-binding enzyme SMUL_2211 PF16177 Acetyl-coenzyme A synthetase N-terminus SMUL_2212 PF00474 Sodium:solute symporter family SMUL_2213 PF04341 Protein of unknown function, DUF485 SMUL_2214 PF00486 Transcriptional regulatory protein, C terminal SMUL_2214 PF00072 Response regulator receiver domain SMUL_2216 PF04371 Porphyromonas-type peptidyl-arginine deiminase SMUL_2217 PF16916 Dimerisation domain of Zinc Transporter SMUL_2217 PF01545 Cation efflux family SMUL_2218 PF07670 Nucleoside recognition SMUL_2218 PF02421 Ferrous iron transport protein B SMUL_2218 PF07664 Ferrous iron transport protein B C terminus SMUL_2219 PF04023 FeoA domain SMUL_2220 PF00795 Carbon-nitrogen hydrolase SMUL_2224 PF03459 TOBE domain SMUL_2225 PF00293 NUDIX domain SMUL_2226 PF01544 CorA-like Mg2+ transporter protein SMUL_2227 PF01551 Peptidase family M23 SMUL_2227 PF04225 Opacity-associated protein A LysM-like domain SMUL_2229 PF02913 FAD linked oxidases, C-terminal domain SMUL_2229 PF01565 FAD binding domain SMUL_2230 PF03631 Virulence factor BrkB SMUL_2232 PF00772 DnaB-like helicase N terminal domain SMUL_2232 PF00772 DnaB-like helicase N terminal domain SMUL_2232 PF03796 DnaB-like helicase C terminal domain SMUL_2232 PF03796 DnaB-like helicase C terminal domain SMUL_2233 PF04551 GcpE protein SMUL_2234 PF18074 Primosomal protein N C-terminal domain SMUL_2234 PF17764 3′ DNA-binding domain (3′BD) SMUL_2234 PF00271 Helicase conserved C-terminal domain SMUL_2234 PF00270 DEAD/DEAH box helicase SMUL_2234 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SMUL_2235 PF07963 Prokaryotic N-terminal methylation motif SMUL_2235 PF00114 Pilin (bacterial filament) SMUL_2236 PF07963 Prokaryotic N-terminal methylation motif SMUL_2236 PF00114 Pilin (bacterial filament) SMUL_2239 PF04851 Type III restriction enzyme, res subunit SMUL_2239 PF00271 Helicase conserved C-terminal domain SMUL_2239 PF12344 Ultra-violet resistance protein B SMUL_2239 PF17757 UvrB interaction domain SMUL_2239 PF02151 UvrB/uvrC motif SMUL_2241 PF13090 Polyphosphate kinase C-terminal domain 2 SMUL_2241 PF13089 Polyphosphate kinase N-terminal domain SMUL_2241 PF02503 Polyphosphate kinase middle domain SMUL_2241 PF17941 Polyphosphate kinase C-terminal domain 1 SMUL_2242 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_2243 PF00929 Exonuclease SMUL_2243 PF02811 PHP domain SMUL_2243 PF14579 Helix-hairpin-helix motif SMUL_2243 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMUL_2243 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMUL_2244 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SMUL_2245 PF00834 Ribulose-phosphate 3 epimerase family SMUL_2246 PF00830 Ribosomal L28 family SMUL_2247 PF01960 ArgJ family SMUL_2250 PF13277 YmdB-like protein SMUL_2251 PF03461 TRCF domain SMUL_2251 PF17757 UvrB interaction domain SMUL_2251 PF00270 DEAD/DEAH box helicase SMUL_2251 PF00271 Helicase conserved C-terminal domain SMUL_2251 PF02559 CarD-like/TRCF domain SMUL_2253 PF01551 Peptidase family M23 SMUL_2253 PF04225 Opacity-associated protein A LysM-like domain SMUL_2254 PF08245 Mur ligase middle domain SMUL_2255 PF07694 5TMR of 5TMR-LYT SMUL_2255 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2257 PF09334 tRNA synthetases class I (M) SMUL_2257 PF00133 tRNA synthetases class I (I, L, M and V) SMUL_2257 PF13603 Leucyl-tRNA synthetase, Domain 2 SMUL_2258 PF07549 SecD/SecF GG Motif SMUL_2258 PF02355 Protein export membrane protein SMUL_2259 PF02355 Protein export membrane protein SMUL_2260 PF02699 Preprotein translocase subunit SMUL_2262 PF02772 S-adenosylmethionine synthetase, central domain SMUL_2262 PF02773 S-adenosylmethionine synthetase, C-terminal domain SMUL_2262 PF00438 S-adenosylmethionine synthetase, N-terminal domain SMUL_2264 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SMUL_2265 PF02861 Clp amino terminal domain, pathogenicity island component SMUL_2265 PF17871 AAA lid domain SMUL_2265 PF07724 AAA domain (Cdc48 subfamily) SMUL_2265 PF00004 ATPase family associated with various cellular activities (AAA) SMUL_2265 PF10431 C-terminal, D2-small domain, of ClpB protein SMUL_2266 PF02617 ATP-dependent Clp protease adaptor protein ClpS SMUL_2268 PF01668 SmpB protein SMUL_2269 PF00288 GHMP kinases N terminal domain SMUL_2270 PF02599 Global regulator protein family SMUL_2271 PF01509 TruB family pseudouridylate synthase (N terminal domain) SMUL_2272 PF00580 UvrD/REP helicase N-terminal domain SMUL_2272 PF13361 UvrD-like helicase C-terminal domain SMUL_2273 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMUL_2273 PF03466 LysR substrate binding domain SMUL_2277 PF00425 chorismate binding enzyme SMUL_2278 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMUL_2278 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMUL_2282 PF12833 Helix-turn-helix domain SMUL_2283 PF00392 Bacterial regulatory proteins, gntR family SMUL_2283 PF00155 Aminotransferase class I and II SMUL_2286 PF01245 Ribosomal protein L19 SMUL_2287 PF01746 tRNA (Guanine-1)-methyltransferase SMUL_2288 PF01782 RimM N-terminal domain SMUL_2290 PF00886 Ribosomal protein S16 SMUL_2291 PF02881 SRP54-type protein, helical bundle domain SMUL_2291 PF00448 SRP54-type protein, GTPase domain SMUL_2291 PF02978 Signal peptide binding domain SMUL_2292 PF00849 RNA pseudouridylate synthase SMUL_2293 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SMUL_2295 PF01784 NIF3 (NGG1p interacting factor 3) SMUL_2296 PF02091 Glycyl-tRNA synthetase alpha subunit SMUL_2298 PF00731 AIR carboxylase SMUL_2301 PF02811 PHP domain SMUL_2302 PF00120 Glutamine synthetase, catalytic domain SMUL_2302 PF03951 Glutamine synthetase, beta-Grasp domain SMUL_2303 PF17092 Penicillin-binding protein OB-like domain SMUL_2303 PF00905 Penicillin binding protein transpeptidase domain SMUL_2303 PF00912 Transglycosylase SMUL_2304 PF00005 ABC transporter SMUL_2304 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMUL_2305 PF00155 Aminotransferase class I and II SMUL_2306 PF02545 Maf-like protein SMUL_2308 PF02272 DHHA1 domain SMUL_2308 PF01411 tRNA synthetases class II (A) SMUL_2308 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMUL_2310 PF00072 Response regulator receiver domain SMUL_2310 PF00486 Transcriptional regulatory protein, C terminal SMUL_2311 PF13426 PAS domain SMUL_2311 PF13188 PAS domain SMUL_2311 PF00989 PAS fold SMUL_2311 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2312 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_2312 PF01568 Molydopterin dinucleotide binding domain SMUL_2312 PF00384 Molybdopterin oxidoreductase SMUL_2313 PF12800 4Fe-4S binding domain SMUL_2313 PF13247 4Fe-4S dicluster domain SMUL_2314 PF04976 DMSO reductase anchor subunit (DmsC) SMUL_2315 PF02613 Nitrate reductase delta subunit SMUL_2319 PF00762 Ferrochelatase SMUL_2321 PF02049 Flagellar hook-basal body complex protein FliE SMUL_2322 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMUL_2322 PF00460 Flagella basal body rod protein SMUL_2323 PF00460 Flagella basal body rod protein SMUL_2324 PF01098 Cell cycle protein SMUL_2325 PF04101 Glycosyltransferase family 28 C-terminal domain SMUL_2325 PF03033 Glycosyltransferase family 28 N-terminal domain SMUL_2328 PF07670 Nucleoside recognition SMUL_2330 PF00892 EamA-like transporter family SMUL_2338 PF00117 Glutamine amidotransferase class-I SMUL_2339 PF07690 Major Facilitator Superfamily SMUL_2340 PF00501 AMP-binding enzyme SMUL_2340 PF01553 Acyltransferase SMUL_2341 PF01022 Bacterial regulatory protein, arsR family SMUL_2345 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SMUL_2346 PF04223 Citrate lyase, alpha subunit (CitF) SMUL_2347 PF03328 HpcH/HpaI aldolase/citrate lyase family SMUL_2348 PF06857 Malonate decarboxylase delta subunit (MdcD) SMUL_2349 PF08218 Citrate lyase ligase C-terminal domain SMUL_2350 PF05145 Transition state regulatory protein AbrB SMUL_2352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2352 PF00989 PAS fold SMUL_2352 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SMUL_2352 PF17203 Single cache domain 3 SMUL_2353 PF00072 Response regulator receiver domain SMUL_2353 PF12431 Transcriptional regulator SMUL_2353 PF08279 HTH domain SMUL_2354 PF01970 Tripartite tricarboxylate transporter TctA family SMUL_2357 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMUL_2357 PF00072 Response regulator receiver domain SMUL_2357 PF01627 Hpt domain SMUL_2357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2357 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2357 PF00672 HAMP domain SMUL_2358 PF00072 Response regulator receiver domain SMUL_2359 PF07690 Major Facilitator Superfamily SMUL_2360 PF00156 Phosphoribosyl transferase domain SMUL_2361 PF00860 Permease family SMUL_2362 PF04055 Radical SAM superfamily SMUL_2365 PF00291 Pyridoxal-phosphate dependent enzyme SMUL_2367 PF01909 Nucleotidyltransferase domain SMUL_2367 PF01966 HD domain SMUL_2367 PF08335 GlnD PII-uridylyltransferase SMUL_2368 PF01380 SIS domain SMUL_2369 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2375 PF00027 Cyclic nucleotide-binding domain SMUL_2375 PF00520 Ion transport protein SMUL_2380 PF12848 ABC transporter SMUL_2380 PF00005 ABC transporter SMUL_2382 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2382 PF00563 EAL domain SMUL_2382 PF03707 Bacterial signalling protein N terminal repeat SMUL_2383 PF13247 4Fe-4S dicluster domain SMUL_2384 PF00361 Proton-conducting membrane transporter SMUL_2385 PF00146 NADH dehydrogenase SMUL_2386 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMUL_2387 PF00361 Proton-conducting membrane transporter SMUL_2387 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMUL_2388 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMUL_2388 PF00374 Nickel-dependent hydrogenase SMUL_2388 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMUL_2390 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMUL_2395 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMUL_2395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMUL_2395 PF02824 TGS domain SMUL_2395 PF03129 Anticodon binding domain SMUL_2397 PF00899 ThiF family SMUL_2398 PF00072 Response regulator receiver domain SMUL_2398 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2401 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle SMUL_2401 PF14602 Hexapeptide repeat of succinyl-transferase SMUL_2402 PF10609 NUBPL iron-transfer P-loop NTPase SMUL_2402 PF01883 Iron-sulfur cluster assembly protein SMUL_2403 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SMUL_2403 PF02542 YgbB family SMUL_2405 PF01747 ATP-sulfurylase SMUL_2405 PF14306 PUA-like domain SMUL_2408 PF04264 YceI-like domain SMUL_2409 PF01205 Uncharacterized protein family UPF0029 SMUL_2409 PF09186 Domain of unknown function (DUF1949) SMUL_2410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMUL_2410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMUL_2411 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2413 PF08402 TOBE domain SMUL_2413 PF00005 ABC transporter SMUL_2414 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2417 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMUL_2417 PF03459 TOBE domain SMUL_2418 PF07943 Penicillin-binding protein 5, C-terminal domain SMUL_2418 PF00768 D-alanyl-D-alanine carboxypeptidase SMUL_2419 PF14748 Pyrroline-5-carboxylate reductase dimerisation SMUL_2419 PF03807 NADP oxidoreductase coenzyme F420-dependent SMUL_2420 PF00005 ABC transporter SMUL_2420 PF02687 FtsX-like permease family SMUL_2420 PF12704 MacB-like periplasmic core domain SMUL_2421 PF02687 FtsX-like permease family SMUL_2421 PF12704 MacB-like periplasmic core domain SMUL_2421 PF00005 ABC transporter SMUL_2422 PF13533 Biotin-lipoyl like SMUL_2423 PF02321 Outer membrane efflux protein SMUL_2426 PF00924 Mechanosensitive ion channel SMUL_2426 PF05552 Conserved TM helix SMUL_2432 PF12833 Helix-turn-helix domain SMUL_2432 PF02311 AraC-like ligand binding domain SMUL_2434 PF08212 Lipocalin-like domain SMUL_2442 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SMUL_2443 PF01029 NusB family SMUL_2444 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMUL_2447 PF00793 DAHP synthetase I family SMUL_2448 PF00892 EamA-like transporter family SMUL_2449 PF00924 Mechanosensitive ion channel SMUL_2450 PF01926 50S ribosome-binding GTPase SMUL_2450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SMUL_2451 PF01202 Shikimate kinase SMUL_2452 PF00579 tRNA synthetases class I (W and Y) SMUL_2453 PF02403 Seryl-tRNA synthetase N-terminal domain SMUL_2453 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMUL_2455 PF00682 HMGL-like SMUL_2455 PF08502 LeuA allosteric (dimerisation) domain SMUL_2456 PF01066 CDP-alcohol phosphatidyltransferase SMUL_2458 PF00004 ATPase family associated with various cellular activities (AAA) SMUL_2458 PF17862 AAA+ lid domain SMUL_2458 PF01434 Peptidase family M41 SMUL_2460 PF00072 Response regulator receiver domain SMUL_2461 PF00977 Histidine biosynthesis protein SMUL_2462 PF00117 Glutamine amidotransferase class-I SMUL_2464 PF02516 Oligosaccharyl transferase STT3 subunit SMUL_2464 PF18527 STT3/PglB C-terminal beta-barrel domain SMUL_2465 PF02719 Polysaccharide biosynthesis protein SMUL_2466 PF00953 Glycosyl transferase family 4 SMUL_2468 PF00535 Glycosyl transferase family 2 SMUL_2469 PF00534 Glycosyl transferases group 1 SMUL_2470 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_2472 PF01370 NAD dependent epimerase/dehydratase family SMUL_2473 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_2476 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMUL_2477 PF01370 NAD dependent epimerase/dehydratase family SMUL_2478 PF16363 GDP-mannose 4,6 dehydratase SMUL_2479 PF00483 Nucleotidyl transferase SMUL_2480 PF01370 NAD dependent epimerase/dehydratase family SMUL_2482 PF16363 GDP-mannose 4,6 dehydratase SMUL_2483 PF01050 Mannose-6-phosphate isomerase SMUL_2483 PF00483 Nucleotidyl transferase SMUL_2484 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMUL_2484 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMUL_2484 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMUL_2485 PF14743 DNA ligase OB-like domain SMUL_2485 PF01068 ATP dependent DNA ligase domain SMUL_2486 PF16363 GDP-mannose 4,6 dehydratase SMUL_2487 PF00483 Nucleotidyl transferase SMUL_2488 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMUL_2488 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMUL_2488 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMUL_2488 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMUL_2497 PF13580 SIS domain SMUL_2498 PF00294 pfkB family carbohydrate kinase SMUL_2498 PF01467 Cytidylyltransferase-like SMUL_2503 PF00403 Heavy-metal-associated domain SMUL_2504 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2504 PF00563 EAL domain SMUL_2504 PF08448 PAS fold SMUL_2505 PF00892 EamA-like transporter family SMUL_2506 PF00072 Response regulator receiver domain SMUL_2507 PF08534 Redoxin SMUL_2510 PF00677 Lumazine binding domain SMUL_2511 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2511 PF02743 Cache domain SMUL_2511 PF00672 HAMP domain SMUL_2512 PF02626 Carboxyltransferase domain, subdomain A and B SMUL_2514 PF03746 LamB/YcsF family SMUL_2515 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMUL_2518 PF00072 Response regulator receiver domain SMUL_2518 PF00486 Transcriptional regulatory protein, C terminal SMUL_2519 PF00672 HAMP domain SMUL_2519 PF17200 Single Cache domain 2 SMUL_2519 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2520 PF13932 GidA associated domain SMUL_2520 PF01134 Glucose inhibited division protein A SMUL_2521 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMUL_2521 PF00355 Rieske [2Fe-2S] domain SMUL_2522 PF00032 Cytochrome b(C-terminal)/b6/petD SMUL_2522 PF00033 Cytochrome b/b6/petB SMUL_2525 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SMUL_2526 PF00109 Beta-ketoacyl synthase, N-terminal domain SMUL_2526 PF02801 Beta-ketoacyl synthase, C-terminal domain SMUL_2527 PF00550 Phosphopantetheine attachment site SMUL_2529 PF01676 Metalloenzyme superfamily SMUL_2529 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SMUL_2530 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SMUL_2530 PF00953 Glycosyl transferase family 4 SMUL_2531 PF08245 Mur ligase middle domain SMUL_2533 PF02397 Bacterial sugar transferase SMUL_2535 PF00535 Glycosyl transferase family 2 SMUL_2537 PF00106 short chain dehydrogenase SMUL_2538 PF01565 FAD binding domain SMUL_2538 PF04030 D-arabinono-1,4-lactone oxidase SMUL_2540 PF01040 UbiA prenyltransferase family SMUL_2541 PF13276 HTH-like domain SMUL_2541 PF00665 Integrase core domain SMUL_2541 PF13333 Integrase core domain SMUL_2546 PF01757 Acyltransferase family SMUL_2548 PF02463 RecF/RecN/SMC N terminal domain SMUL_2558 PF00005 ABC transporter SMUL_2558 PF08239 Bacterial SH3 domain SMUL_2562 PF01061 ABC-2 type transporter SMUL_2563 PF16363 GDP-mannose 4,6 dehydratase SMUL_2564 PF04321 RmlD substrate binding domain SMUL_2565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SMUL_2566 PF00483 Nucleotidyl transferase SMUL_2567 PF16363 GDP-mannose 4,6 dehydratase SMUL_2568 PF01568 Molydopterin dinucleotide binding domain SMUL_2568 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_2568 PF00384 Molybdopterin oxidoreductase SMUL_2570 PF13247 4Fe-4S dicluster domain SMUL_2571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2571 PF00989 PAS fold SMUL_2571 PF08447 PAS fold SMUL_2571 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2572 PF00072 Response regulator receiver domain SMUL_2572 PF00486 Transcriptional regulatory protein, C terminal SMUL_2573 PF00563 EAL domain SMUL_2573 PF12792 CSS motif domain associated with EAL SMUL_2576 PF03649 Uncharacterised protein family (UPF0014) SMUL_2577 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMUL_2577 PF00289 Biotin carboxylase, N-terminal domain SMUL_2577 PF02785 Biotin carboxylase C-terminal domain SMUL_2580 PF01384 Phosphate transporter family SMUL_2581 PF00270 DEAD/DEAH box helicase SMUL_2581 PF00271 Helicase conserved C-terminal domain SMUL_2582 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SMUL_2584 PF00005 ABC transporter SMUL_2585 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2586 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2587 PF12849 PBP superfamily domain SMUL_2588 PF17202 Single cache domain 3 SMUL_2588 PF00672 HAMP domain SMUL_2588 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2589 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SMUL_2590 PF10397 Adenylosuccinate lyase C-terminus SMUL_2590 PF00206 Lyase SMUL_2591 PF00939 Sodium:sulfate symporter transmembrane region SMUL_2592 PF00672 HAMP domain SMUL_2592 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2592 PF02743 Cache domain SMUL_2594 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2596 PF01895 PhoU domain SMUL_2597 PF00486 Transcriptional regulatory protein, C terminal SMUL_2597 PF00072 Response regulator receiver domain SMUL_2598 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2598 PF00989 PAS fold SMUL_2598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2598 PF11808 Phosphate regulon sensor protein PhoR SMUL_2599 PF03061 Thioesterase superfamily SMUL_2605 PF01638 HxlR-like helix-turn-helix SMUL_2606 PF02525 Flavodoxin-like fold SMUL_2607 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2607 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2608 PF06508 Queuosine biosynthesis protein QueC SMUL_2609 PF04055 Radical SAM superfamily SMUL_2614 PF02562 PhoH-like protein SMUL_2616 PF07690 Major Facilitator Superfamily SMUL_2617 PF07690 Major Facilitator Superfamily SMUL_2618 PF02321 Outer membrane efflux protein SMUL_2619 PF00873 AcrB/AcrD/AcrF family SMUL_2620 PF00529 HlyD membrane-fusion protein of T1SS SMUL_2620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMUL_2623 PF01243 Pyridoxamine 5'-phosphate oxidase SMUL_2624 PF00375 Sodium:dicarboxylate symporter family SMUL_2625 PF02664 S-Ribosylhomocysteinase (LuxS) SMUL_2630 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SMUL_2630 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SMUL_2630 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SMUL_2630 PF10371 Domain of unknown function SMUL_2630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMUL_2631 PF13419 Haloacid dehalogenase-like hydrolase SMUL_2633 PF05736 OprF membrane domain SMUL_2633 PF00691 OmpA family SMUL_2634 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMUL_2636 PF03352 Methyladenine glycosylase SMUL_2638 PF00465 Iron-containing alcohol dehydrogenase SMUL_2640 PF00654 Voltage gated chloride channel SMUL_2641 PF02222 ATP-grasp domain SMUL_2644 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SMUL_2645 PF00380 Ribosomal protein S9/S16 SMUL_2646 PF00572 Ribosomal protein L13 SMUL_2647 PF12705 PD-(D/E)XK nuclease superfamily SMUL_2647 PF00580 UvrD/REP helicase N-terminal domain SMUL_2647 PF13361 UvrD-like helicase C-terminal domain SMUL_2652 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMUL_2652 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SMUL_2655 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMUL_2656 PF00486 Transcriptional regulatory protein, C terminal SMUL_2656 PF00072 Response regulator receiver domain SMUL_2657 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2657 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2659 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SMUL_2659 PF00117 Glutamine amidotransferase class-I SMUL_2663 PF00709 Adenylosuccinate synthetase SMUL_2664 PF13393 Histidyl-tRNA synthetase SMUL_2665 PF00266 Aminotransferase class-V SMUL_2666 PF02743 Cache domain SMUL_2666 PF00672 HAMP domain SMUL_2666 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2667 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2667 PF00672 HAMP domain SMUL_2668 PF13419 Haloacid dehalogenase-like hydrolase SMUL_2669 PF02779 Transketolase, pyrimidine binding domain SMUL_2669 PF02780 Transketolase, C-terminal domain SMUL_2669 PF00456 Transketolase, thiamine diphosphate binding domain SMUL_2670 PF00348 Polyprenyl synthetase SMUL_2671 PF01471 Putative peptidoglycan binding domain SMUL_2671 PF03572 Peptidase family S41 SMUL_2671 PF13180 PDZ domain SMUL_2672 PF02575 YbaB/EbfC DNA-binding family SMUL_2673 PF02261 Aspartate decarboxylase SMUL_2674 PF02875 Mur ligase family, glutamate ligase domain SMUL_2674 PF08245 Mur ligase middle domain SMUL_2677 PF01196 Ribosomal protein L17 SMUL_2678 PF01000 RNA polymerase Rpb3/RpoA insert domain SMUL_2678 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SMUL_2678 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SMUL_2679 PF00163 Ribosomal protein S4/S9 N-terminal domain SMUL_2679 PF01479 S4 domain SMUL_2680 PF00411 Ribosomal protein S11 SMUL_2681 PF00416 Ribosomal protein S13/S18 SMUL_2682 PF00444 Ribosomal protein L36 SMUL_2683 PF01176 Translation initiation factor 1A / IF-1 SMUL_2684 PF00557 Metallopeptidase family M24 SMUL_2685 PF00344 SecY translocase SMUL_2686 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SMUL_2687 PF03719 Ribosomal protein S5, C-terminal domain SMUL_2687 PF00333 Ribosomal protein S5, N-terminal domain SMUL_2688 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SMUL_2689 PF00347 Ribosomal protein L6 SMUL_2690 PF00410 Ribosomal protein S8 SMUL_2691 PF00253 Ribosomal protein S14p/S29e SMUL_2692 PF00281 Ribosomal protein L5 SMUL_2692 PF00673 ribosomal L5P family C-terminus SMUL_2693 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SMUL_2693 PF00467 KOW motif SMUL_2694 PF00238 Ribosomal protein L14p/L23e SMUL_2695 PF00366 Ribosomal protein S17 SMUL_2696 PF00831 Ribosomal L29 protein SMUL_2697 PF00252 Ribosomal protein L16p/L10e SMUL_2698 PF00189 Ribosomal protein S3, C-terminal domain SMUL_2698 PF07650 KH domain SMUL_2699 PF00237 Ribosomal protein L22p/L17e SMUL_2700 PF03947 Ribosomal Proteins L2, C-terminal domain SMUL_2700 PF00181 Ribosomal Proteins L2, RNA binding domain SMUL_2701 PF00276 Ribosomal protein L23 SMUL_2702 PF00573 Ribosomal protein L4/L1 family SMUL_2703 PF00297 Ribosomal protein L3 SMUL_2704 PF00338 Ribosomal protein S10p/S20e SMUL_2707 PF01351 Ribonuclease HII SMUL_2708 PF03239 Iron permease FTR1 family SMUL_2709 PF10634 Fe2+ transport protein SMUL_2713 PF00005 ABC transporter SMUL_2713 PF12704 MacB-like periplasmic core domain SMUL_2713 PF02687 FtsX-like permease family SMUL_2718 PF07670 Nucleoside recognition SMUL_2718 PF02421 Ferrous iron transport protein B SMUL_2718 PF07664 Ferrous iron transport protein B C terminus SMUL_2719 PF01264 Chorismate synthase SMUL_2720 PF00035 Double-stranded RNA binding motif SMUL_2720 PF14622 Ribonuclease-III-like SMUL_2721 PF00075 RNase H SMUL_2723 PF16730 DnaG-primase C-terminal, helicase-binding domain SMUL_2723 PF13662 Toprim domain SMUL_2723 PF08275 DNA primase catalytic core, N-terminal domain SMUL_2723 PF01807 CHC2 zinc finger SMUL_2724 PF00764 Arginosuccinate synthase SMUL_2725 PF00072 Response regulator receiver domain SMUL_2727 PF03707 Bacterial signalling protein N terminal repeat SMUL_2727 PF00563 EAL domain SMUL_2727 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2728 PF00072 Response regulator receiver domain SMUL_2729 PF08447 PAS fold SMUL_2729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2730 PF00072 Response regulator receiver domain SMUL_2730 PF01339 CheB methylesterase SMUL_2731 PF03975 CheD chemotactic sensory transduction SMUL_2732 PF00672 HAMP domain SMUL_2732 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2732 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2733 PF03705 CheR methyltransferase, all-alpha domain SMUL_2733 PF01739 CheR methyltransferase, SAM binding domain SMUL_2736 PF02203 Tar ligand binding domain homologue SMUL_2736 PF00672 HAMP domain SMUL_2736 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2737 PF01584 CheW-like domain SMUL_2739 PF00226 DnaJ domain SMUL_2739 PF01556 DnaJ C terminal domain SMUL_2739 PF00684 DnaJ central domain SMUL_2741 PF02796 Helix-turn-helix domain of resolvase SMUL_2741 PF00665 Integrase core domain SMUL_2742 PF01695 IstB-like ATP binding protein SMUL_2754 PF00403 Heavy-metal-associated domain SMUL_2761 PF00593 TonB dependent receptor SMUL_2761 PF07715 TonB-dependent Receptor Plug Domain SMUL_2762 PF00486 Transcriptional regulatory protein, C terminal SMUL_2762 PF00072 Response regulator receiver domain SMUL_2763 PF12282 Signal transduction histidine kinase SMUL_2763 PF07568 Histidine kinase SMUL_2763 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2765 PF04023 FeoA domain SMUL_2765 PF07670 Nucleoside recognition SMUL_2765 PF07664 Ferrous iron transport protein B C terminus SMUL_2765 PF02421 Ferrous iron transport protein B SMUL_2765 PF17910 FeoB cytosolic helical domain SMUL_2766 PF04023 FeoA domain SMUL_2768 PF07715 TonB-dependent Receptor Plug Domain SMUL_2768 PF00593 TonB dependent receptor SMUL_2773 PF02472 Biopolymer transport protein ExbD/TolR SMUL_2774 PF01618 MotA/TolQ/ExbB proton channel family SMUL_2778 PF00005 ABC transporter SMUL_2779 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2780 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2781 PF13419 Haloacid dehalogenase-like hydrolase SMUL_2782 PF03824 High-affinity nickel-transport protein SMUL_2783 PF03824 High-affinity nickel-transport protein SMUL_2785 PF00258 Flavodoxin SMUL_2787 PF01810 LysE type translocator SMUL_2788 PF01370 NAD dependent epimerase/dehydratase family SMUL_2788 PF08338 Domain of unknown function (DUF1731) SMUL_2791 PF00005 ABC transporter SMUL_2794 PF01810 LysE type translocator SMUL_2797 PF00892 EamA-like transporter family SMUL_2798 PF00072 Response regulator receiver domain SMUL_2798 PF00486 Transcriptional regulatory protein, C terminal SMUL_2799 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2799 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2799 PF08521 Two-component sensor kinase N-terminal SMUL_2800 PF00884 Sulfatase SMUL_2800 PF08019 Phosphoethanolamine transferase EptA/EptB SMUL_2802 PF12792 CSS motif domain associated with EAL SMUL_2802 PF00563 EAL domain SMUL_2803 PF08447 PAS fold SMUL_2803 PF00989 PAS fold SMUL_2803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2803 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2804 PF02743 Cache domain SMUL_2804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2804 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2805 PF00486 Transcriptional regulatory protein, C terminal SMUL_2805 PF00072 Response regulator receiver domain SMUL_2806 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2806 PF00672 HAMP domain SMUL_2806 PF02743 Cache domain SMUL_2809 PF02001 Protein of unknown function DUF134 SMUL_2810 PF02673 Bacitracin resistance protein BacA SMUL_2811 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SMUL_2812 PF01869 BadF/BadG/BcrA/BcrD ATPase family SMUL_2816 PF00206 Lyase SMUL_2816 PF10415 Fumarase C C-terminus SMUL_2817 PF00206 Lyase SMUL_2817 PF10415 Fumarase C C-terminus SMUL_2818 PF03605 Anaerobic c4-dicarboxylate membrane transporter SMUL_2819 PF17763 Glutaminase/Asparaginase C-terminal domain SMUL_2819 PF00710 Asparaginase, N-terminal SMUL_2820 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2820 PF00989 PAS fold SMUL_2821 PF00072 Response regulator receiver domain SMUL_2821 PF00486 Transcriptional regulatory protein, C terminal SMUL_2824 PF03707 Bacterial signalling protein N terminal repeat SMUL_2824 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2824 PF00563 EAL domain SMUL_2825 PF02661 Fic/DOC family SMUL_2825 PF13784 Fic/DOC family N-terminal SMUL_2827 PF12008 Type I restriction and modification enzyme - subunit R C terminal SMUL_2827 PF18766 SWI2/SNF2 ATPase SMUL_2827 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SMUL_2829 PF00999 Sodium/hydrogen exchanger family SMUL_2829 PF03471 Transporter associated domain SMUL_2829 PF02080 TrkA-C domain SMUL_2835 PF05573 NosL SMUL_2837 PF05140 ResB-like family SMUL_2837 PF01578 Cytochrome C assembly protein SMUL_2838 PF03916 Polysulphide reductase, NrfD SMUL_2839 PF00037 4Fe-4S binding domain SMUL_2839 PF13247 4Fe-4S dicluster domain SMUL_2840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMUL_2840 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SMUL_2842 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2842 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2842 PF00989 PAS fold SMUL_2844 PF02743 Cache domain SMUL_2844 PF00672 HAMP domain SMUL_2844 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2849 PF11798 IMS family HHH motif SMUL_2849 PF00817 impB/mucB/samB family SMUL_2849 PF11799 impB/mucB/samB family C-terminal domain SMUL_2850 PF09335 SNARE associated Golgi protein SMUL_2852 PF07715 TonB-dependent Receptor Plug Domain SMUL_2852 PF00593 TonB dependent receptor SMUL_2854 PF02472 Biopolymer transport protein ExbD/TolR SMUL_2855 PF01618 MotA/TolQ/ExbB proton channel family SMUL_2856 PF00586 AIR synthase related protein, N-terminal domain SMUL_2856 PF02769 AIR synthase related protein, C-terminal domain SMUL_2857 PF01206 Sulfurtransferase TusA SMUL_2859 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMUL_2860 PF00563 EAL domain SMUL_2860 PF00990 Diguanylate cyclase, GGDEF domain SMUL_2860 PF13426 PAS domain SMUL_2860 PF05231 MASE1 SMUL_2860 PF08448 PAS fold SMUL_2860 PF08447 PAS fold SMUL_2863 PF00005 ABC transporter SMUL_2864 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2865 PF12849 PBP superfamily domain SMUL_2866 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2867 PF00005 ABC transporter SMUL_2867 PF08402 TOBE domain SMUL_2870 PF02634 FdhD/NarQ family SMUL_2872 PF13247 4Fe-4S dicluster domain SMUL_2876 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_2876 PF13359 DDE superfamily endonuclease SMUL_2877 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMUL_2877 PF13359 DDE superfamily endonuclease SMUL_2884 PF02472 Biopolymer transport protein ExbD/TolR SMUL_2885 PF01618 MotA/TolQ/ExbB proton channel family SMUL_2886 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMUL_2886 PF03459 TOBE domain SMUL_2891 PF13649 Methyltransferase domain SMUL_2892 PF03459 TOBE domain SMUL_2893 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMUL_2895 PF12833 Helix-turn-helix domain SMUL_2895 PF02311 AraC-like ligand binding domain SMUL_2898 PF12833 Helix-turn-helix domain SMUL_2898 PF02311 AraC-like ligand binding domain SMUL_2900 PF13247 4Fe-4S dicluster domain SMUL_2906 PF00989 PAS fold SMUL_2906 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2906 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2907 PF00072 Response regulator receiver domain SMUL_2907 PF00486 Transcriptional regulatory protein, C terminal SMUL_2908 PF03841 L-seryl-tRNA selenium transferase SMUL_2909 PF09107 Elongation factor SelB, winged helix SMUL_2909 PF00009 Elongation factor Tu GTP binding domain SMUL_2909 PF03144 Elongation factor Tu domain 2 SMUL_2909 PF09105 Elongation factor SelB, winged helix SMUL_2909 PF09106 Elongation factor SelB, winged helix SMUL_2912 PF04264 YceI-like domain SMUL_2913 PF17954 Quercetinase C-terminal cupin domain SMUL_2913 PF02678 Pirin SMUL_2920 PF00486 Transcriptional regulatory protein, C terminal SMUL_2920 PF00072 Response regulator receiver domain SMUL_2921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2921 PF00672 HAMP domain SMUL_2921 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2922 PF01965 DJ-1/PfpI family SMUL_2928 PF00221 Aromatic amino acid lyase SMUL_2933 PF13193 AMP-binding enzyme C-terminal domain SMUL_2933 PF16177 Acetyl-coenzyme A synthetase N-terminus SMUL_2933 PF00501 AMP-binding enzyme SMUL_2936 PF00109 Beta-ketoacyl synthase, N-terminal domain SMUL_2936 PF02801 Beta-ketoacyl synthase, C-terminal domain SMUL_2937 PF00550 Phosphopantetheine attachment site SMUL_2938 PF00271 Helicase conserved C-terminal domain SMUL_2938 PF00270 DEAD/DEAH box helicase SMUL_2944 PF01841 Transglutaminase-like superfamily SMUL_2946 PF02086 D12 class N6 adenine-specific DNA methyltransferase SMUL_2947 PF00072 Response regulator receiver domain SMUL_2948 PF01425 Amidase SMUL_2949 PF01425 Amidase SMUL_2950 PF00289 Biotin carboxylase, N-terminal domain SMUL_2950 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMUL_2950 PF02785 Biotin carboxylase C-terminal domain SMUL_2952 PF09347 Domain of unknown function (DUF1989) SMUL_2953 PF00005 ABC transporter SMUL_2953 PF08402 TOBE domain SMUL_2954 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2956 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2956 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2956 PF00989 PAS fold SMUL_2957 PF00072 Response regulator receiver domain SMUL_2957 PF00486 Transcriptional regulatory protein, C terminal SMUL_2959 PF13419 Haloacid dehalogenase-like hydrolase SMUL_2960 PF00266 Aminotransferase class-V SMUL_2963 PF00005 ABC transporter SMUL_2964 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_2965 PF00486 Transcriptional regulatory protein, C terminal SMUL_2965 PF00072 Response regulator receiver domain SMUL_2966 PF02702 Osmosensitive K+ channel His kinase sensor domain SMUL_2966 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2966 PF13493 Domain of unknown function (DUF4118) SMUL_2967 PF02669 K+-transporting ATPase, c chain SMUL_2969 PF03814 Potassium-transporting ATPase A subunit SMUL_2970 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMUL_2970 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMUL_2973 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_2973 PF00512 His Kinase A (phospho-acceptor) domain SMUL_2973 PF00989 PAS fold SMUL_2974 PF00072 Response regulator receiver domain SMUL_2974 PF00158 Sigma-54 interaction domain SMUL_2974 PF02954 Bacterial regulatory protein, Fis family SMUL_2975 PF07670 Nucleoside recognition SMUL_2976 PF07670 Nucleoside recognition SMUL_2977 PF01546 Peptidase family M20/M25/M40 SMUL_2977 PF07687 Peptidase dimerisation domain SMUL_2978 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMUL_2979 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_2979 PF00672 HAMP domain SMUL_2980 PF00106 short chain dehydrogenase SMUL_2982 PF16653 Saccharopine dehydrogenase C-terminal domain SMUL_2982 PF03435 Saccharopine dehydrogenase NADP binding domain SMUL_2983 PF01725 Ham1 family SMUL_2984 PF03562 MltA specific insert domain SMUL_2984 PF06725 3D domain SMUL_2986 PF07690 Major Facilitator Superfamily SMUL_2987 PF09335 SNARE associated Golgi protein SMUL_2991 PF03453 MoeA N-terminal region (domain I and II) SMUL_2991 PF00994 Probable molybdopterin binding domain SMUL_2991 PF03454 MoeA C-terminal region (domain IV) SMUL_2992 PF02391 MoaE protein SMUL_2994 PF04324 BFD-like [2Fe-2S] binding domain SMUL_2994 PF01592 NifU-like N terminal domain SMUL_2994 PF01106 NifU-like domain SMUL_2995 PF00266 Aminotransferase class-V SMUL_2996 PF18269 T3SS EscN ATPase C-terminal domain SMUL_2996 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMUL_2997 PF01227 GTP cyclohydrolase I SMUL_2998 PF05697 Bacterial trigger factor protein (TF) SMUL_2998 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMUL_2998 PF05698 Bacterial trigger factor protein (TF) C-terminus SMUL_2999 PF00574 Clp protease SMUL_3001 PF01327 Polypeptide deformylase SMUL_3002 PF01078 Magnesium chelatase, subunit ChlI SMUL_3002 PF13335 Magnesium chelatase, subunit ChlI C-terminal SMUL_3003 PF03853 YjeF-related protein N-terminus SMUL_3003 PF01256 Carbohydrate kinase SMUL_3004 PF00551 Formyl transferase SMUL_3005 PF05690 Thiazole biosynthesis protein ThiG SMUL_3011 PF02796 Helix-turn-helix domain of resolvase SMUL_3011 PF00665 Integrase core domain SMUL_3015 PF00665 Integrase core domain SMUL_3015 PF02796 Helix-turn-helix domain of resolvase SMUL_3017 PF00766 Electron transfer flavoprotein FAD-binding domain SMUL_3017 PF01012 Electron transfer flavoprotein domain SMUL_3018 PF04205 FMN-binding domain SMUL_3018 PF03358 NADPH-dependent FMN reductase SMUL_3018 PF00890 FAD binding domain SMUL_3019 PF01494 FAD binding domain SMUL_3028 PF02613 Nitrate reductase delta subunit SMUL_3030 PF00037 4Fe-4S binding domain SMUL_3030 PF13247 4Fe-4S dicluster domain SMUL_3031 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_3031 PF00384 Molybdopterin oxidoreductase SMUL_3031 PF01568 Molydopterin dinucleotide binding domain SMUL_3035 PF00072 Response regulator receiver domain SMUL_3035 PF00486 Transcriptional regulatory protein, C terminal SMUL_3036 PF00512 His Kinase A (phospho-acceptor) domain SMUL_3036 PF00672 HAMP domain SMUL_3036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_3037 PF00171 Aldehyde dehydrogenase family SMUL_3040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMUL_3040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMUL_3040 PF01842 ACT domain SMUL_3043 PF17674 HHH domain SMUL_3043 PF16921 Tex protein YqgF-like domain SMUL_3043 PF09371 Tex-like protein N-terminal domain SMUL_3043 PF00575 S1 RNA binding domain SMUL_3045 PF01739 CheR methyltransferase, SAM binding domain SMUL_3045 PF03705 CheR methyltransferase, all-alpha domain SMUL_3045 PF01339 CheB methylesterase SMUL_3045 PF08448 PAS fold SMUL_3049 PF16591 Helical bimodular sensor domain SMUL_3049 PF00672 HAMP domain SMUL_3049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_3050 PF00881 Nitroreductase family SMUL_3057 PF02687 FtsX-like permease family SMUL_3058 PF00005 ABC transporter SMUL_3063 PF00933 Glycosyl hydrolase family 3 N terminal domain SMUL_3063 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMUL_3065 PF00999 Sodium/hydrogen exchanger family SMUL_3066 PF01810 LysE type translocator SMUL_3069 PF13673 Acetyltransferase (GNAT) domain SMUL_3070 PF03358 NADPH-dependent FMN reductase SMUL_3074 PF00873 AcrB/AcrD/AcrF family SMUL_3075 PF00529 HlyD membrane-fusion protein of T1SS SMUL_3075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMUL_3079 PF00486 Transcriptional regulatory protein, C terminal SMUL_3079 PF00072 Response regulator receiver domain SMUL_3081 PF00005 ABC transporter SMUL_3081 PF08402 TOBE domain SMUL_3082 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_3083 PF13416 Bacterial extracellular solute-binding protein SMUL_3084 PF00080 Copper/zinc superoxide dismutase (SODC) SMUL_3086 PF01507 Phosphoadenosine phosphosulfate reductase family SMUL_3087 PF01507 Phosphoadenosine phosphosulfate reductase family SMUL_3088 PF00009 Elongation factor Tu GTP binding domain SMUL_3090 PF00899 ThiF family SMUL_3092 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SMUL_3092 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SMUL_3093 PF14824 Sirohaem biosynthesis protein central SMUL_3093 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMUL_3093 PF10414 Sirohaem synthase dimerisation region SMUL_3094 PF01053 Cys/Met metabolism PLP-dependent enzyme SMUL_3100 PF00072 Response regulator receiver domain SMUL_3100 PF00486 Transcriptional regulatory protein, C terminal SMUL_3101 PF00672 HAMP domain SMUL_3101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_3101 PF00512 His Kinase A (phospho-acceptor) domain SMUL_3103 PF00990 Diguanylate cyclase, GGDEF domain SMUL_3106 PF00072 Response regulator receiver domain SMUL_3106 PF00486 Transcriptional regulatory protein, C terminal SMUL_3110 PF16916 Dimerisation domain of Zinc Transporter SMUL_3110 PF01545 Cation efflux family SMUL_3115 PF02683 Cytochrome C biogenesis protein transmembrane region SMUL_3115 PF11412 Disulphide bond corrector protein DsbC SMUL_3116 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMUL_3117 PF02040 Arsenical pump membrane protein SMUL_3118 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMUL_3119 PF00355 Rieske [2Fe-2S] domain SMUL_3120 PF00384 Molybdopterin oxidoreductase SMUL_3120 PF01568 Molydopterin dinucleotide binding domain SMUL_3120 PF18465 Rieske 3Fe-4S SMUL_3123 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMUL_3125 PF00005 ABC transporter SMUL_3125 PF17850 CysA C-terminal regulatory domain SMUL_3125 PF12857 TOBE-like domain SMUL_3126 PF00528 Binding-protein-dependent transport system inner membrane component SMUL_3129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMUL_3129 PF03459 TOBE domain SMUL_3132 PF12704 MacB-like periplasmic core domain SMUL_3132 PF02687 FtsX-like permease family SMUL_3132 PF00005 ABC transporter SMUL_3135 PF02086 D12 class N6 adenine-specific DNA methyltransferase SMUL_3141 PF00005 ABC transporter SMUL_3142 PF00158 Sigma-54 interaction domain SMUL_3142 PF02954 Bacterial regulatory protein, Fis family SMUL_3142 PF00072 Response regulator receiver domain SMUL_3143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMUL_3143 PF00512 His Kinase A (phospho-acceptor) domain SMUL_3143 PF13426 PAS domain SMUL_3143 PF00072 Response regulator receiver domain SMUL_3143 PF08448 PAS fold SMUL_3146 PF01568 Molydopterin dinucleotide binding domain SMUL_3146 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_3146 PF00384 Molybdopterin oxidoreductase SMUL_3147 PF13247 4Fe-4S dicluster domain SMUL_3148 PF12849 PBP superfamily domain SMUL_3149 PF08447 PAS fold SMUL_3149 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMUL_3151 PF03741 Integral membrane protein TerC family SMUL_3152 PF02621 Menaquinone biosynthesis SMUL_3153 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SMUL_3153 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SMUL_3154 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SMUL_3155 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SMUL_3156 PF13520 Amino acid permease SMUL_3158 PF03949 Malic enzyme, NAD binding domain SMUL_3158 PF01515 Phosphate acetyl/butaryl transferase SMUL_3158 PF00390 Malic enzyme, N-terminal domain SMUL_3159 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMUL_3161 PF00289 Biotin carboxylase, N-terminal domain SMUL_3161 PF02785 Biotin carboxylase C-terminal domain SMUL_3161 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMUL_3162 PF00364 Biotin-requiring enzyme SMUL_3163 PF00692 dUTPase SMUL_3166 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SMUL_3168 PF10672 S-adenosylmethionine-dependent methyltransferase SMUL_3168 PF17785 PUA-like domain SMUL_3171 PF07196 Flagellin hook IN motif SMUL_3171 PF00700 Bacterial flagellin C-terminal helical region SMUL_3171 PF00669 Bacterial flagellin N-terminal helical region SMUL_3172 PF02719 Polysaccharide biosynthesis protein SMUL_3173 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMUL_3174 PF02348 Cytidylyltransferase SMUL_3176 PF03102 NeuB family SMUL_3176 PF08666 SAF domain SMUL_3180 PF13193 AMP-binding enzyme C-terminal domain SMUL_3180 PF00501 AMP-binding enzyme SMUL_3181 PF00535 Glycosyl transferase family 2 SMUL_3182 PF03275 UDP-galactopyranose mutase SMUL_3184 PF00535 Glycosyl transferase family 2 SMUL_3185 PF00535 Glycosyl transferase family 2 SMUL_3186 PF00132 Bacterial transferase hexapeptide (six repeats) SMUL_3188 PF08241 Methyltransferase domain SMUL_3190 PF00551 Formyl transferase SMUL_3190 PF18216 N-formyltransferase dimerization C-terminal domain SMUL_3191 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMUL_3194 PF00669 Bacterial flagellin N-terminal helical region SMUL_3194 PF00700 Bacterial flagellin C-terminal helical region SMUL_3194 PF07196 Flagellin hook IN motif SMUL_3195 PF01751 Toprim domain SMUL_3195 PF01131 DNA topoisomerase SMUL_3195 PF01396 Topoisomerase DNA binding C4 zinc finger SMUL_3196 PF04055 Radical SAM superfamily SMUL_3196 PF06968 Biotin and Thiamin Synthesis associated domain SMUL_3197 PF00285 Citrate synthase, C-terminal domain SMUL_3200 PF03952 Enolase, N-terminal domain SMUL_3200 PF00113 Enolase, C-terminal TIM barrel domain SMUL_3201 PF00154 recA bacterial DNA recombination protein SMUL_3202 PF02621 Menaquinone biosynthesis SMUL_3203 PF01313 Bacterial export proteins, family 3 SMUL_3204 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SMUL_3205 PF00814 Glycoprotease family SMUL_3207 PF03707 Bacterial signalling protein N terminal repeat SMUL_3207 PF00990 Diguanylate cyclase, GGDEF domain SMUL_3207 PF00563 EAL domain SMUL_3212 PF00149 Calcineurin-like phosphoesterase SMUL_3213 PF01235 Sodium:alanine symporter family SMUL_3214 PF00860 Permease family SMUL_3215 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SMUL_3215 PF13288 DXP reductoisomerase C-terminal domain SMUL_3215 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SMUL_3219 PF02595 Glycerate kinase family SMUL_3220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMUL_3220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMUL_3224 PF00199 Catalase SMUL_3224 PF06628 Catalase-related immune-responsive SMUL_3225 PF00578 AhpC/TSA family SMUL_3225 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMUL_3226 PF00027 Cyclic nucleotide-binding domain SMUL_3226 PF13545 Crp-like helix-turn-helix domain SMUL_3228 PF00330 Aconitase family (aconitate hydratase) SMUL_3229 PF12804 MobA-like NTP transferase domain SMUL_3235 PF02253 Phospholipase A1 SMUL_3236 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SMUL_3237 PF01967 MoaC family SMUL_3240 PF00872 Transposase, Mutator family SMUL_3248 PF00872 Transposase, Mutator family SMUL_3255 PF13247 4Fe-4S dicluster domain SMUL_3256 PF01568 Molydopterin dinucleotide binding domain SMUL_3256 PF00384 Molybdopterin oxidoreductase SMUL_3257 PF00581 Rhodanese-like domain SMUL_3259 PF10609 NUBPL iron-transfer P-loop NTPase SMUL_3270 PF01027 Inhibitor of apoptosis-promoting Bax1 SMUL_3274 PF13247 4Fe-4S dicluster domain SMUL_3275 PF00384 Molybdopterin oxidoreductase SMUL_3275 PF01568 Molydopterin dinucleotide binding domain SMUL_3275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_3277 PF03466 LysR substrate binding domain SMUL_3277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMUL_3281 PF00037 4Fe-4S binding domain SMUL_3281 PF13247 4Fe-4S dicluster domain SMUL_3282 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMUL_3282 PF01568 Molydopterin dinucleotide binding domain SMUL_3282 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMUL_3282 PF00384 Molybdopterin oxidoreductase SMUL_3283 PF13847 Methyltransferase domain SMUL_3284 PF00211 Adenylate and Guanylate cyclase catalytic domain SMUL_3285 PF01966 HD domain SMUL_3286 PF03840 Preprotein translocase SecG subunit SMUL_3288 PF01765 Ribosome recycling factor SMUL_3289 PF00156 Phosphoribosyl transferase domain SMUL_3294 PF04011 LemA family SMUL_3298 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMUL_3298 PF00460 Flagella basal body rod protein SMUL_3298 PF07559 Flagellar basal body protein FlaE SMUL_3298 PF07196 Flagellin hook IN motif SMUL_3299 PF00460 Flagella basal body rod protein SMUL_3299 PF07196 Flagellin hook IN motif SMUL_3299 PF07559 Flagellar basal body protein FlaE SMUL_3299 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMUL_3300 PF02511 Thymidylate synthase complementing protein SMUL_3301 PF02075 Crossover junction endodeoxyribonuclease RuvC