locus-tag class description SMN_0001 PF00308 Bacterial dnaA protein SMN_0001 PF08299 Bacterial dnaA protein helix-turn-helix SMN_0001 PF11638 DnaA N-terminal domain SMN_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SMN_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SMN_0002 PF02767 DNA polymerase III beta subunit, central domain SMN_0003 PF01751 Toprim domain SMN_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0003 PF00204 DNA gyrase B SMN_0003 PF00986 DNA gyrase B subunit, carboxyl terminus SMN_0004 PF00563 EAL domain SMN_0005 PF14489 QueF-like protein SMN_0007 PF03167 Uracil DNA glycosylase superfamily SMN_0008 PF00563 EAL domain SMN_0008 PF01590 GAF domain SMN_0008 PF00990 Diguanylate cyclase, GGDEF domain SMN_0008 PF00360 Phytochrome region SMN_0009 PF14815 NUDIX domain SMN_0009 PF00730 HhH-GPD superfamily base excision DNA repair protein SMN_0009 PF00633 Helix-hairpin-helix motif SMN_0010 PF00571 CBS domain SMN_0010 PF00005 ABC transporter SMN_0011 PF00528 Binding-protein-dependent transport system inner membrane component SMN_0012 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMN_0013 PF07690 Major Facilitator Superfamily SMN_0014 PF05681 Fumarate hydratase (Fumerase) SMN_0015 PF05683 Fumarase C-terminus SMN_0017 PF00330 Aconitase family (aconitate hydratase) SMN_0018 PF00694 Aconitase C-terminal domain SMN_0026 PF13333 Integrase core domain SMN_0026 PF13276 HTH-like domain SMN_0026 PF00665 Integrase core domain SMN_0030 PF00872 Transposase, Mutator family SMN_0037 PF01695 IstB-like ATP binding protein SMN_0038 PF00665 Integrase core domain SMN_0038 PF02796 Helix-turn-helix domain of resolvase SMN_0042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0044 PF06826 Predicted Permease Membrane Region SMN_0044 PF02080 TrkA-C domain SMN_0047 PF00665 Integrase core domain SMN_0047 PF13276 HTH-like domain SMN_0047 PF13333 Integrase core domain SMN_0049 PF00072 Response regulator receiver domain SMN_0049 PF00486 Transcriptional regulatory protein, C terminal SMN_0050 PF00872 Transposase, Mutator family SMN_0052 PF17425 Arylsulfotransferase Ig-like domain SMN_0052 PF05935 Arylsulfotransferase (ASST) SMN_0054 PF02600 Disulfide bond formation protein DsbB SMN_0055 PF01323 DSBA-like thioredoxin domain SMN_0057 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMN_0057 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMN_0058 PF00857 Isochorismatase family SMN_0059 PF00440 Bacterial regulatory proteins, tetR family SMN_0059 PF16925 Tetracyclin repressor-like, C-terminal domain SMN_0061 PF12833 Helix-turn-helix domain SMN_0062 PF02910 Fumarate reductase flavoprotein C-term SMN_0062 PF00890 FAD binding domain SMN_0063 PF00056 lactate/malate dehydrogenase, NAD binding domain SMN_0063 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMN_0066 PF08241 Methyltransferase domain SMN_0067 PF01875 Memo-like protein SMN_0072 PF12833 Helix-turn-helix domain SMN_0072 PF07883 Cupin domain SMN_0074 PF05728 Uncharacterised protein family (UPF0227) SMN_0075 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_0075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMN_0077 PF01568 Molydopterin dinucleotide binding domain SMN_0077 PF00384 Molybdopterin oxidoreductase SMN_0077 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0078 PF00990 Diguanylate cyclase, GGDEF domain SMN_0078 PF08448 PAS fold SMN_0087 PF00920 Dehydratase family SMN_0088 PF01914 MarC family integral membrane protein SMN_0091 PF00005 ABC transporter SMN_0092 PF01032 FecCD transport family SMN_0095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0095 PF08447 PAS fold SMN_0095 PF13426 PAS domain SMN_0096 PF00483 Nucleotidyl transferase SMN_0097 PF06418 CTP synthase N-terminus SMN_0097 PF00117 Glutamine amidotransferase class-I SMN_0098 PF01368 DHH family SMN_0098 PF17768 RecJ OB domain SMN_0098 PF02272 DHHA1 domain SMN_0100 PF00795 Carbon-nitrogen hydrolase SMN_0101 PF00268 Ribonucleotide reductase, small chain SMN_0105 PF03477 ATP cone domain SMN_0105 PF13597 Anaerobic ribonucleoside-triphosphate reductase SMN_0106 PF01177 Asp/Glu/Hydantoin racemase SMN_0107 PF02867 Ribonucleotide reductase, barrel domain SMN_0107 PF03477 ATP cone domain SMN_0107 PF00317 Ribonucleotide reductase, all-alpha domain SMN_0108 PF00206 Lyase SMN_0108 PF10397 Adenylosuccinate lyase C-terminus SMN_0109 PF00849 RNA pseudouridylate synthase SMN_0110 PF01557 Fumarylacetoacetate (FAA) hydrolase family SMN_0111 PF04055 Radical SAM superfamily SMN_0113 PF00977 Histidine biosynthesis protein SMN_0114 PF00398 Ribosomal RNA adenine dimethylase SMN_0115 PF17770 Ribonuclease J C-terminal domain SMN_0115 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMN_0115 PF00753 Metallo-beta-lactamase superfamily SMN_0116 PF00571 CBS domain SMN_0116 PF01380 SIS domain SMN_0117 PF01479 S4 domain SMN_0117 PF00849 RNA pseudouridylate synthase SMN_0118 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMN_0118 PF16193 AAA C-terminal domain SMN_0118 PF01661 Macro domain SMN_0118 PF12002 MgsA AAA+ ATPase C terminal SMN_0120 PF01312 FlhB HrpN YscU SpaS Family SMN_0122 PF00586 AIR synthase related protein, N-terminal domain SMN_0122 PF02769 AIR synthase related protein, C-terminal domain SMN_0123 PF01121 Dephospho-CoA kinase SMN_0124 PF01678 Diaminopimelate epimerase SMN_0126 PF00472 RF-1 domain SMN_0126 PF03462 PCRF domain SMN_0127 PF01649 Ribosomal protein S20 SMN_0130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMN_0130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMN_0130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMN_0130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMN_0131 PF01252 Signal peptidase (SPase) II SMN_0132 PF03129 Anticodon binding domain SMN_0132 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMN_0132 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMN_0133 PF05198 Translation initiation factor IF-3, N-terminal domain SMN_0133 PF00707 Translation initiation factor IF-3, C-terminal domain SMN_0134 PF01632 Ribosomal protein L35 SMN_0135 PF00453 Ribosomal protein L20 SMN_0136 PF13746 4Fe-4S dicluster domain SMN_0136 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SMN_0136 PF12801 4Fe-4S binding domain SMN_0138 PF01165 Ribosomal protein S21 SMN_0141 PF03738 Glutathionylspermidine synthase preATP-grasp SMN_0142 PF04461 Protein of unknown function (DUF520) SMN_0144 PF01219 Prokaryotic diacylglycerol kinase SMN_0145 PF01274 Malate synthase SMN_0150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0150 PF00672 HAMP domain SMN_0150 PF00512 His Kinase A (phospho-acceptor) domain SMN_0150 PF13426 PAS domain SMN_0151 PF00486 Transcriptional regulatory protein, C terminal SMN_0151 PF00072 Response regulator receiver domain SMN_0154 PF02470 MlaD protein SMN_0155 PF00005 ABC transporter SMN_0156 PF02405 Permease MlaE SMN_0157 PF01625 Peptide methionine sulfoxide reductase SMN_0158 PF01914 MarC family integral membrane protein SMN_0159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0159 PF00672 HAMP domain SMN_0159 PF17202 Single cache domain 3 SMN_0161 PF11849 Domain of unknown function (DUF3369) SMN_0162 PF11849 Domain of unknown function (DUF3369) SMN_0166 PF00512 His Kinase A (phospho-acceptor) domain SMN_0166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0167 PF00072 Response regulator receiver domain SMN_0167 PF00486 Transcriptional regulatory protein, C terminal SMN_0168 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMN_0169 PF00543 Nitrogen regulatory protein P-II SMN_0170 PF00909 Ammonium Transporter Family SMN_0173 PF00248 Aldo/keto reductase family SMN_0175 PF00486 Transcriptional regulatory protein, C terminal SMN_0175 PF00072 Response regulator receiver domain SMN_0178 PF00528 Binding-protein-dependent transport system inner membrane component SMN_0179 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMN_0180 PF00005 ABC transporter SMN_0183 PF00950 ABC 3 transport family SMN_0184 PF00005 ABC transporter SMN_0188 PF01261 Xylose isomerase-like TIM barrel SMN_0190 PF13193 AMP-binding enzyme C-terminal domain SMN_0190 PF00501 AMP-binding enzyme SMN_0191 PF01434 Peptidase family M41 SMN_0191 PF06480 FtsH Extracellular SMN_0191 PF17862 AAA+ lid domain SMN_0191 PF00004 ATPase family associated with various cellular activities (AAA) SMN_0192 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMN_0193 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMN_0194 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMN_0195 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMN_0198 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMN_0198 PF01568 Molydopterin dinucleotide binding domain SMN_0198 PF13237 4Fe-4S dicluster domain SMN_0198 PF00384 Molybdopterin oxidoreductase SMN_0198 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0199 PF00146 NADH dehydrogenase SMN_0200 PF12838 4Fe-4S dicluster domain SMN_0201 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMN_0202 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMN_0203 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMN_0203 PF00361 Proton-conducting membrane transporter SMN_0204 PF00361 Proton-conducting membrane transporter SMN_0205 PF00361 Proton-conducting membrane transporter SMN_0207 PF00171 Aldehyde dehydrogenase family SMN_0212 PF16591 Helical bimodular sensor domain SMN_0212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0212 PF00672 HAMP domain SMN_0214 PF04055 Radical SAM superfamily SMN_0214 PF06463 Molybdenum Cofactor Synthesis C SMN_0215 PF03453 MoeA N-terminal region (domain I and II) SMN_0215 PF00994 Probable molybdopterin binding domain SMN_0215 PF03454 MoeA C-terminal region (domain IV) SMN_0217 PF04452 RNA methyltransferase SMN_0218 PF01197 Ribosomal protein L31 SMN_0219 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMN_0220 PF00588 SpoU rRNA Methylase family SMN_0220 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMN_0223 PF00155 Aminotransferase class I and II SMN_0224 PF03447 Homoserine dehydrogenase, NAD binding domain SMN_0224 PF00742 Homoserine dehydrogenase SMN_0224 PF01842 ACT domain SMN_0225 PF02021 Uncharacterised protein family UPF0102 SMN_0226 PF00085 Thioredoxin SMN_0227 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_0228 PF05173 Dihydrodipicolinate reductase, C-terminus SMN_0228 PF01113 Dihydrodipicolinate reductase, N-terminus SMN_0229 PF00156 Phosphoribosyl transferase domain SMN_0230 PF16199 Radical_SAM C-terminal domain SMN_0230 PF04055 Radical SAM superfamily SMN_0233 PF01502 Phosphoribosyl-AMP cyclohydrolase SMN_0233 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SMN_0235 PF01063 Amino-transferase class IV SMN_0236 PF00578 AhpC/TSA family SMN_0238 PF02677 Epoxyqueuosine reductase QueH SMN_0239 PF07977 FabA-like domain SMN_0240 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SMN_0240 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_0241 PF10431 C-terminal, D2-small domain, of ClpB protein SMN_0241 PF07724 AAA domain (Cdc48 subfamily) SMN_0241 PF06689 ClpX C4-type zinc finger SMN_0244 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMN_0244 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SMN_0244 PF02142 MGS-like domain SMN_0249 PF00899 ThiF family SMN_0250 PF01975 Survival protein SurE SMN_0251 PF02684 Lipid-A-disaccharide synthetase SMN_0253 PF02796 Helix-turn-helix domain of resolvase SMN_0253 PF00665 Integrase core domain SMN_0254 PF01695 IstB-like ATP binding protein SMN_0255 PF00589 Phage integrase family SMN_0255 PF02899 Phage integrase, N-terminal SAM-like domain SMN_0258 PF01527 Transposase SMN_0259 PF00665 Integrase core domain SMN_0259 PF13276 HTH-like domain SMN_0259 PF13333 Integrase core domain SMN_0260 PF00872 Transposase, Mutator family SMN_0261 PF13333 Integrase core domain SMN_0261 PF00665 Integrase core domain SMN_0261 PF13276 HTH-like domain SMN_0267 PF12800 4Fe-4S binding domain SMN_0267 PF13247 4Fe-4S dicluster domain SMN_0268 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0268 PF01568 Molydopterin dinucleotide binding domain SMN_0268 PF00384 Molybdopterin oxidoreductase SMN_0269 PF00665 Integrase core domain SMN_0269 PF02796 Helix-turn-helix domain of resolvase SMN_0270 PF01695 IstB-like ATP binding protein SMN_0271 PF03449 Transcription elongation factor, N-terminal SMN_0271 PF01272 Transcription elongation factor, GreA/GreB, C-term SMN_0272 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMN_0272 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMN_0274 PF00072 Response regulator receiver domain SMN_0274 PF01584 CheW-like domain SMN_0275 PF07194 P2 response regulator binding domain SMN_0275 PF01627 Hpt domain SMN_0275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0275 PF02895 Signal transducing histidine kinase, homodimeric domain SMN_0275 PF01584 CheW-like domain SMN_0276 PF01584 CheW-like domain SMN_0279 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMN_0280 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMN_0280 PF13359 DDE superfamily endonuclease SMN_0281 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMN_0281 PF13359 DDE superfamily endonuclease SMN_0282 PF00437 Type II/IV secretion system protein SMN_0283 PF14693 Ribosomal protein TL5, C-terminal domain SMN_0283 PF01386 Ribosomal L25p family SMN_0284 PF01195 Peptidyl-tRNA hydrolase SMN_0286 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMN_0286 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMN_0287 PF01842 ACT domain SMN_0287 PF01817 Chorismate mutase type II SMN_0287 PF00800 Prephenate dehydratase SMN_0288 PF00155 Aminotransferase class I and II SMN_0289 PF01514 Secretory protein of YscJ/FliF family SMN_0289 PF08345 Flagellar M-ring protein C-terminal SMN_0290 PF01706 FliG C-terminal domain SMN_0290 PF14842 FliG N-terminal domain SMN_0290 PF14841 FliG middle domain SMN_0292 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SMN_0292 PF02780 Transketolase, C-terminal domain SMN_0292 PF02779 Transketolase, pyrimidine binding domain SMN_0294 PF00578 AhpC/TSA family SMN_0294 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMN_0295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0295 PF02743 Cache domain SMN_0295 PF00672 HAMP domain SMN_0296 PF00037 4Fe-4S binding domain SMN_0297 PF00334 Nucleoside diphosphate kinase SMN_0299 PF01783 Ribosomal L32p protein family SMN_0300 PF02504 Fatty acid synthesis protein SMN_0301 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMN_0301 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMN_0302 PF01842 ACT domain SMN_0302 PF02153 Prephenate dehydrogenase SMN_0303 PF07244 Surface antigen variable number repeat SMN_0303 PF01103 Surface antigen SMN_0304 PF02541 Ppx/GppA phosphatase family SMN_0305 PF00037 4Fe-4S binding domain SMN_0306 PF00512 His Kinase A (phospho-acceptor) domain SMN_0306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0307 PF00072 Response regulator receiver domain SMN_0307 PF00486 Transcriptional regulatory protein, C terminal SMN_0309 PF02660 Glycerol-3-phosphate acyltransferase SMN_0310 PF02445 Quinolinate synthetase A protein SMN_0311 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMN_0311 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMN_0312 PF01312 FlhB HrpN YscU SpaS Family SMN_0314 PF01551 Peptidase family M23 SMN_0314 PF01476 LysM domain SMN_0315 PF03775 Septum formation inhibitor MinC, C-terminal domain SMN_0316 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SMN_0318 PF08544 GHMP kinases C terminal SMN_0318 PF00288 GHMP kinases N terminal domain SMN_0320 PF00009 Elongation factor Tu GTP binding domain SMN_0320 PF11987 Translation-initiation factor 2 SMN_0320 PF04760 Translation initiation factor IF-2, N-terminal region SMN_0321 PF02033 Ribosome-binding factor A SMN_0322 PF02576 RimP N-terminal domain SMN_0322 PF17384 RimP C-terminal SH3 domain SMN_0323 PF01872 RibD C-terminal domain SMN_0323 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SMN_0325 PF08448 PAS fold SMN_0325 PF00990 Diguanylate cyclase, GGDEF domain SMN_0325 PF00563 EAL domain SMN_0325 PF08447 PAS fold SMN_0326 PF00313 'Cold-shock' DNA-binding domain SMN_0327 PF13426 PAS domain SMN_0327 PF00512 His Kinase A (phospho-acceptor) domain SMN_0327 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0327 PF00672 HAMP domain SMN_0328 PF00486 Transcriptional regulatory protein, C terminal SMN_0328 PF00072 Response regulator receiver domain SMN_0330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMN_0332 PF01266 FAD dependent oxidoreductase SMN_0332 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SMN_0335 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMN_0335 PF00384 Molybdopterin oxidoreductase SMN_0335 PF01568 Molydopterin dinucleotide binding domain SMN_0335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0336 PF13247 4Fe-4S dicluster domain SMN_0337 PF03916 Polysulphide reductase, NrfD SMN_0338 PF00990 Diguanylate cyclase, GGDEF domain SMN_0338 PF10442 FIST C domain SMN_0338 PF00563 EAL domain SMN_0338 PF08495 FIST N domain SMN_0339 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0339 PF00384 Molybdopterin oxidoreductase SMN_0339 PF01568 Molydopterin dinucleotide binding domain SMN_0340 PF13247 4Fe-4S dicluster domain SMN_0341 PF03916 Polysulphide reductase, NrfD SMN_0342 PF00072 Response regulator receiver domain SMN_0342 PF00486 Transcriptional regulatory protein, C terminal SMN_0343 PF13426 PAS domain SMN_0343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0343 PF00512 His Kinase A (phospho-acceptor) domain SMN_0343 PF00672 HAMP domain SMN_0345 PF06969 HemN C-terminal domain SMN_0345 PF04055 Radical SAM superfamily SMN_0347 PF01368 DHH family SMN_0347 PF02833 DHHA2 domain SMN_0350 PF01209 ubiE/COQ5 methyltransferase family SMN_0351 PF02601 Exonuclease VII, large subunit SMN_0351 PF13742 OB-fold nucleic acid binding domain SMN_0353 PF00990 Diguanylate cyclase, GGDEF domain SMN_0354 PF00563 EAL domain SMN_0354 PF00990 Diguanylate cyclase, GGDEF domain SMN_0354 PF03707 Bacterial signalling protein N terminal repeat SMN_0355 PF00962 Adenosine/AMP deaminase SMN_0357 PF12833 Helix-turn-helix domain SMN_0357 PF06719 AraC-type transcriptional regulator N-terminus SMN_0358 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMN_0359 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMN_0359 PF03466 LysR substrate binding domain SMN_0360 PF03601 Conserved hypothetical protein 698 SMN_0361 PF00255 Glutathione peroxidase SMN_0365 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SMN_0365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SMN_0367 PF01979 Amidohydrolase family SMN_0368 PF01220 Dehydroquinase class II SMN_0369 PF01321 Creatinase/Prolidase N-terminal domain SMN_0369 PF00557 Metallopeptidase family M24 SMN_0370 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMN_0371 PF00448 SRP54-type protein, GTPase domain SMN_0372 PF10609 NUBPL iron-transfer P-loop NTPase SMN_0374 PF04542 Sigma-70 region 2 SMN_0374 PF04545 Sigma-70, region 4 SMN_0374 PF04539 Sigma-70 region 3 SMN_0375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMN_0375 PF02154 Flagellar motor switch protein FliM SMN_0376 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMN_0376 PF04509 CheC-like family SMN_0377 PF03641 Possible lysine decarboxylase SMN_0379 PF00535 Glycosyl transferase family 2 SMN_0380 PF08889 WbqC-like protein family SMN_0381 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMN_0382 PF00892 EamA-like transporter family SMN_0385 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SMN_0385 PF14572 Phosphoribosyl synthetase-associated domain SMN_0386 PF00679 Elongation factor G C-terminus SMN_0386 PF00009 Elongation factor Tu GTP binding domain SMN_0386 PF03144 Elongation factor Tu domain 2 SMN_0386 PF06421 GTP-binding protein LepA C-terminus SMN_0387 PF00156 Phosphoribosyl transferase domain SMN_0390 PF00521 DNA gyrase/topoisomerase IV, subunit A SMN_0390 PF03989 DNA gyrase C-terminal domain, beta-propeller SMN_0393 PF02954 Bacterial regulatory protein, Fis family SMN_0393 PF00072 Response regulator receiver domain SMN_0393 PF00158 Sigma-54 interaction domain SMN_0394 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMN_0394 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMN_0396 PF01208 Uroporphyrinogen decarboxylase (URO-D) SMN_0397 PF04055 Radical SAM superfamily SMN_0399 PF16868 NMT1-like family SMN_0401 PF00589 Phage integrase family SMN_0401 PF13356 Arm DNA-binding domain SMN_0405 PF00872 Transposase, Mutator family SMN_0411 PF00872 Transposase, Mutator family SMN_0420 PF00145 C-5 cytosine-specific DNA methylase SMN_0430 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SMN_0432 PF00872 Transposase, Mutator family SMN_0437 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMN_0437 PF00056 lactate/malate dehydrogenase, NAD binding domain SMN_0439 PF09363 XFP C-terminal domain SMN_0439 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SMN_0439 PF09364 XFP N-terminal domain SMN_0441 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMN_0442 PF01965 DJ-1/PfpI family SMN_0448 PF00563 EAL domain SMN_0448 PF08495 FIST N domain SMN_0448 PF10442 FIST C domain SMN_0448 PF00990 Diguanylate cyclase, GGDEF domain SMN_0451 PF00085 Thioredoxin SMN_0458 PF09905 DNA-binding protein VF530 SMN_0459 PF00106 short chain dehydrogenase SMN_0462 PF13458 Periplasmic binding protein SMN_0463 PF02653 Branched-chain amino acid transport system / permease component SMN_0464 PF02653 Branched-chain amino acid transport system / permease component SMN_0464 PF11862 Domain of unknown function (DUF3382) SMN_0465 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMN_0465 PF00005 ABC transporter SMN_0466 PF00005 ABC transporter SMN_0467 PF00171 Aldehyde dehydrogenase family SMN_0470 PF03883 Peroxide stress protein YaaA SMN_0475 PF00009 Elongation factor Tu GTP binding domain SMN_0475 PF03143 Elongation factor Tu C-terminal domain SMN_0475 PF03144 Elongation factor Tu domain 2 SMN_0476 PF00471 Ribosomal protein L33 SMN_0478 PF02357 Transcription termination factor nusG SMN_0479 PF03946 Ribosomal protein L11, N-terminal domain SMN_0479 PF00298 Ribosomal protein L11, RNA binding domain SMN_0480 PF00687 Ribosomal protein L1p/L10e family SMN_0481 PF00466 Ribosomal protein L10 SMN_0482 PF00542 Ribosomal protein L7/L12 C-terminal domain SMN_0482 PF16320 Ribosomal protein L7/L12 dimerisation domain SMN_0483 PF00562 RNA polymerase Rpb2, domain 6 SMN_0483 PF04560 RNA polymerase Rpb2, domain 7 SMN_0483 PF04563 RNA polymerase beta subunit SMN_0483 PF04561 RNA polymerase Rpb2, domain 2 SMN_0483 PF04565 RNA polymerase Rpb2, domain 3 SMN_0483 PF10385 RNA polymerase beta subunit external 1 domain SMN_0484 PF04998 RNA polymerase Rpb1, domain 5 SMN_0484 PF00623 RNA polymerase Rpb1, domain 2 SMN_0484 PF04997 RNA polymerase Rpb1, domain 1 SMN_0484 PF05000 RNA polymerase Rpb1, domain 4 SMN_0484 PF04983 RNA polymerase Rpb1, domain 3 SMN_0485 PF00164 Ribosomal protein S12/S23 SMN_0486 PF00177 Ribosomal protein S7p/S5e SMN_0487 PF03144 Elongation factor Tu domain 2 SMN_0487 PF00679 Elongation factor G C-terminus SMN_0487 PF14492 Elongation Factor G, domain II SMN_0487 PF00009 Elongation factor Tu GTP binding domain SMN_0487 PF03764 Elongation factor G, domain IV SMN_0488 PF09383 NIL domain SMN_0488 PF00005 ABC transporter SMN_0489 PF00528 Binding-protein-dependent transport system inner membrane component SMN_0490 PF03180 NLPA lipoprotein SMN_0493 PF01037 Lrp/AsnC ligand binding domain SMN_0494 PF00892 EamA-like transporter family SMN_0498 PF01568 Molydopterin dinucleotide binding domain SMN_0498 PF18364 Molybdopterin oxidoreductase N-terminal domain SMN_0498 PF00384 Molybdopterin oxidoreductase SMN_0500 PF00486 Transcriptional regulatory protein, C terminal SMN_0500 PF00072 Response regulator receiver domain SMN_0501 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMN_0502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0502 PF08448 PAS fold SMN_0502 PF13188 PAS domain SMN_0502 PF00512 His Kinase A (phospho-acceptor) domain SMN_0502 PF00072 Response regulator receiver domain SMN_0503 PF02743 Cache domain SMN_0503 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0503 PF00672 HAMP domain SMN_0504 PF08447 PAS fold SMN_0504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0506 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMN_0506 PF01568 Molydopterin dinucleotide binding domain SMN_0506 PF00384 Molybdopterin oxidoreductase SMN_0506 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0507 PF00146 NADH dehydrogenase SMN_0508 PF12838 4Fe-4S dicluster domain SMN_0509 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMN_0510 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMN_0511 PF00361 Proton-conducting membrane transporter SMN_0511 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMN_0512 PF00361 Proton-conducting membrane transporter SMN_0513 PF00361 Proton-conducting membrane transporter SMN_0515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMN_0515 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMN_0515 PF10531 SLBB domain SMN_0517 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMN_0517 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMN_0518 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMN_0519 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMN_0522 PF01168 Alanine racemase, N-terminal domain SMN_0522 PF00842 Alanine racemase, C-terminal domain SMN_0526 PF02527 rRNA small subunit methyltransferase G SMN_0527 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMN_0527 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMN_0528 PF01741 Large-conductance mechanosensitive channel, MscL SMN_0530 PF00925 GTP cyclohydrolase II SMN_0531 PF00490 Delta-aminolevulinic acid dehydratase SMN_0532 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMN_0532 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMN_0533 PF10788 Protein of unknown function (DUF2603) SMN_0534 PF04055 Radical SAM superfamily SMN_0534 PF06969 HemN C-terminal domain SMN_0535 PF02754 Cysteine-rich domain SMN_0540 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SMN_0541 PF08448 PAS fold SMN_0541 PF00990 Diguanylate cyclase, GGDEF domain SMN_0542 PF07690 Major Facilitator Superfamily SMN_0543 PF02810 SEC-C motif SMN_0546 PF08448 PAS fold SMN_0546 PF00990 Diguanylate cyclase, GGDEF domain SMN_0547 PF01790 Prolipoprotein diacylglyceryl transferase SMN_0548 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMN_0549 PF02910 Fumarate reductase flavoprotein C-term SMN_0549 PF00890 FAD binding domain SMN_0550 PF13183 4Fe-4S dicluster domain SMN_0550 PF13085 2Fe-2S iron-sulfur cluster binding domain SMN_0551 PF00350 Dynamin family SMN_0552 PF00350 Dynamin family SMN_0553 PF01594 AI-2E family transporter SMN_0554 PF17864 RuvB AAA lid domain SMN_0554 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMN_0554 PF05491 RuvB C-terminal winged helix domain SMN_0555 PF02548 Ketopantoate hydroxymethyltransferase SMN_0557 PF00290 Tryptophan synthase alpha chain SMN_0560 PF00318 Ribosomal protein S2 SMN_0561 PF00889 Elongation factor TS SMN_0562 PF00005 ABC transporter SMN_0563 PF01311 Bacterial export proteins, family 1 SMN_0565 PF00625 Guanylate kinase SMN_0566 PF02416 mttA/Hcf106 family SMN_0567 PF03485 Arginyl tRNA synthetase N terminal domain SMN_0567 PF05746 DALR anticodon binding domain SMN_0567 PF00750 tRNA synthetases class I (R) SMN_0569 PF00990 Diguanylate cyclase, GGDEF domain SMN_0569 PF10442 FIST C domain SMN_0569 PF08495 FIST N domain SMN_0569 PF00563 EAL domain SMN_0572 PF01475 Ferric uptake regulator family SMN_0573 PF00034 Cytochrome c SMN_0573 PF03150 Di-haem cytochrome c peroxidase SMN_0574 PF01467 Cytidylyltransferase-like SMN_0575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SMN_0575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SMN_0576 PF00162 Phosphoglycerate kinase SMN_0577 PF00121 Triosephosphate isomerase SMN_0579 PF00528 Binding-protein-dependent transport system inner membrane component SMN_0581 PF13184 NusA-like KH domain SMN_0581 PF08529 NusA N-terminal domain SMN_0583 PF00919 Uncharacterized protein family UPF0004 SMN_0583 PF04055 Radical SAM superfamily SMN_0583 PF01938 TRAM domain SMN_0588 PF01171 PP-loop family SMN_0589 PF04055 Radical SAM superfamily SMN_0589 PF00919 Uncharacterized protein family UPF0004 SMN_0590 PF02569 Pantoate-beta-alanine ligase SMN_0591 PF03462 PCRF domain SMN_0591 PF00472 RF-1 domain SMN_0596 PF12170 DNA polymerase III tau subunit V interacting with alpha SMN_0596 PF12169 DNA polymerase III subunits gamma and tau domain III SMN_0597 PF07498 Rho termination factor, N-terminal domain SMN_0597 PF07497 Rho termination factor, RNA-binding domain SMN_0597 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMN_0598 PF01255 Putative undecaprenyl diphosphate synthase SMN_0599 PF00990 Diguanylate cyclase, GGDEF domain SMN_0599 PF00563 EAL domain SMN_0599 PF03707 Bacterial signalling protein N terminal repeat SMN_0600 PF03063 Prismane/CO dehydrogenase family SMN_0606 PF03976 Polyphosphate kinase 2 (PPK2) SMN_0610 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMN_0610 PF00355 Rieske [2Fe-2S] domain SMN_0611 PF00033 Cytochrome b/b6/petB SMN_0611 PF00032 Cytochrome b(C-terminal)/b6/petD SMN_0614 PF00271 Helicase conserved C-terminal domain SMN_0614 PF00270 DEAD/DEAH box helicase SMN_0615 PF02447 GntP family permease SMN_0616 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SMN_0616 PF18381 YcaO cyclodehydratase C-terminal domain SMN_0618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0618 PF00512 His Kinase A (phospho-acceptor) domain SMN_0618 PF00989 PAS fold SMN_0618 PF08447 PAS fold SMN_0619 PF00072 Response regulator receiver domain SMN_0620 PF03480 Bacterial extracellular solute-binding protein, family 7 SMN_0621 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMN_0622 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMN_0624 PF01934 Protein of unknown function DUF86 SMN_0632 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SMN_0637 PF02653 Branched-chain amino acid transport system / permease component SMN_0638 PF11862 Domain of unknown function (DUF3382) SMN_0638 PF02653 Branched-chain amino acid transport system / permease component SMN_0639 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMN_0639 PF00005 ABC transporter SMN_0640 PF00005 ABC transporter SMN_0641 PF05140 ResB-like family SMN_0641 PF01578 Cytochrome C assembly protein SMN_0649 PF02464 Competence-damaged protein SMN_0649 PF18146 Damage-inducible protein CinA KH domain SMN_0649 PF00994 Probable molybdopterin binding domain SMN_0650 PF08264 Anticodon-binding domain of tRNA SMN_0650 PF00133 tRNA synthetases class I (I, L, M and V) SMN_0652 PF01425 Amidase SMN_0653 PF00571 CBS domain SMN_0653 PF00478 IMP dehydrogenase / GMP reductase domain SMN_0654 PF00561 alpha/beta hydrolase fold SMN_0655 PF02609 Exonuclease VII small subunit SMN_0657 PF00899 ThiF family SMN_0658 PF00155 Aminotransferase class I and II SMN_0659 PF02875 Mur ligase family, glutamate ligase domain SMN_0659 PF08245 Mur ligase middle domain SMN_0659 PF01225 Mur ligase family, catalytic domain SMN_0661 PF01713 Smr domain SMN_0661 PF00488 MutS domain V SMN_0662 PF07687 Peptidase dimerisation domain SMN_0662 PF01546 Peptidase family M20/M25/M40 SMN_0663 PF01042 Endoribonuclease L-PSP SMN_0664 PF06039 Malate:quinone oxidoreductase (Mqo) SMN_0667 PF00583 Acetyltransferase (GNAT) family SMN_0668 PF01471 Putative peptidoglycan binding domain SMN_0668 PF17820 PDZ domain SMN_0668 PF03572 Peptidase family S41 SMN_0670 PF00391 PEP-utilising enzyme, mobile domain SMN_0670 PF00224 Pyruvate kinase, barrel domain SMN_0670 PF02887 Pyruvate kinase, alpha/beta domain SMN_0671 PF00829 Ribosomal prokaryotic L21 protein SMN_0672 PF01016 Ribosomal L27 protein SMN_0673 PF01926 50S ribosome-binding GTPase SMN_0673 PF01018 GTP1/OBG SMN_0674 PF00696 Amino acid kinase family SMN_0675 PF00551 Formyl transferase SMN_0675 PF02911 Formyl transferase, C-terminal domain SMN_0677 PF13614 AAA domain SMN_0678 PF17762 HTH domain found in ParB protein SMN_0678 PF02195 ParB-like nuclease domain SMN_0680 PF00430 ATP synthase B/B' CF(0) SMN_0681 PF00213 ATP synthase delta (OSCP) subunit SMN_0682 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMN_0682 PF00306 ATP synthase alpha/beta chain, C terminal domain SMN_0682 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMN_0683 PF00231 ATP synthase SMN_0684 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMN_0684 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMN_0685 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SMN_0686 PF01618 MotA/TolQ/ExbB proton channel family SMN_0687 PF02472 Biopolymer transport protein ExbD/TolR SMN_0689 PF04052 TolB amino-terminal domain SMN_0690 PF01389 OmpA-like transmembrane domain SMN_0690 PF00691 OmpA family SMN_0692 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMN_0693 PF00158 Sigma-54 interaction domain SMN_0693 PF00072 Response regulator receiver domain SMN_0693 PF02954 Bacterial regulatory protein, Fis family SMN_0694 PF00698 Acyl transferase domain SMN_0695 PF01048 Phosphorylase superfamily SMN_0696 PF01171 PP-loop family SMN_0698 PF04898 Glutamate synthase central domain SMN_0698 PF00310 Glutamine amidotransferases class-II SMN_0698 PF01493 GXGXG motif SMN_0698 PF01645 Conserved region in glutamate synthase SMN_0699 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMN_0699 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_0701 PF17848 Acetyl-coA carboxylase zinc finger domain SMN_0701 PF01039 Carboxyl transferase domain SMN_0702 PF02590 Predicted SPOUT methyltransferase SMN_0703 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMN_0705 PF01207 Dihydrouridine synthase (Dus) SMN_0709 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMN_0709 PF04509 CheC-like family SMN_0712 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_0714 PF01243 Pyridoxamine 5'-phosphate oxidase SMN_0721 PF13667 ThiC-associated domain SMN_0721 PF01964 Radical SAM ThiC family SMN_0723 PF00324 Amino acid permease SMN_0724 PF01925 Sulfite exporter TauE/SafE SMN_0725 PF17755 UvrA DNA-binding domain SMN_0725 PF17760 UvrA interaction domain SMN_0725 PF00005 ABC transporter SMN_0726 PF00375 Sodium:dicarboxylate symporter family SMN_0728 PF01367 5'-3' exonuclease, C-terminal SAM fold SMN_0728 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMN_0728 PF00476 DNA polymerase family A SMN_0729 PF02659 Putative manganese efflux pump SMN_0731 PF01556 DnaJ C terminal domain SMN_0731 PF00684 DnaJ central domain SMN_0731 PF00226 DnaJ domain SMN_0736 PF01654 Cytochrome bd terminal oxidase subunit I SMN_0737 PF02322 Cytochrome bd terminal oxidase subunit II SMN_0738 PF00486 Transcriptional regulatory protein, C terminal SMN_0738 PF00072 Response regulator receiver domain SMN_0739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0739 PF00512 His Kinase A (phospho-acceptor) domain SMN_0739 PF16750 Sensor domain of 2-component histidine kinase SMN_0739 PF00672 HAMP domain SMN_0740 PF02132 RecR protein SMN_0740 PF13662 Toprim domain SMN_0741 PF00563 EAL domain SMN_0741 PF03707 Bacterial signalling protein N terminal repeat SMN_0741 PF00990 Diguanylate cyclase, GGDEF domain SMN_0742 PF12729 Four helix bundle sensory module for signal transduction SMN_0742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0742 PF00672 HAMP domain SMN_0743 PF13193 AMP-binding enzyme C-terminal domain SMN_0743 PF00501 AMP-binding enzyme SMN_0744 PF08501 Shikimate dehydrogenase substrate binding domain SMN_0745 PF04715 Anthranilate synthase component I, N terminal region SMN_0745 PF00425 chorismate binding enzyme SMN_0748 PF00464 Serine hydroxymethyltransferase SMN_0749 PF00152 tRNA synthetases class II (D, K and N) SMN_0749 PF01336 OB-fold nucleic acid binding domain SMN_0750 PF01475 Ferric uptake regulator family SMN_0752 PF00990 Diguanylate cyclase, GGDEF domain SMN_0753 PF00437 Type II/IV secretion system protein SMN_0754 PF02686 Glu-tRNAGln amidotransferase C subunit SMN_0756 PF15437 Plasminogen-binding protein pgbA C-terminal SMN_0758 PF03309 Type III pantothenate kinase SMN_0759 PF01634 ATP phosphoribosyltransferase SMN_0760 PF00072 Response regulator receiver domain SMN_0761 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMN_0761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0761 PF00512 His Kinase A (phospho-acceptor) domain SMN_0761 PF01627 Hpt domain SMN_0761 PF00072 Response regulator receiver domain SMN_0761 PF00672 HAMP domain SMN_0764 PF02151 UvrB/uvrC motif SMN_0764 PF01541 GIY-YIG catalytic domain SMN_0764 PF08459 UvrC Helix-hairpin-helix N-terminal SMN_0766 PF00890 FAD binding domain SMN_0767 PF03600 Citrate transporter SMN_0768 PF00117 Glutamine amidotransferase class-I SMN_0768 PF00958 GMP synthase C terminal domain SMN_0768 PF02540 NAD synthase SMN_0770 PF02844 Phosphoribosylglycinamide synthetase, N domain SMN_0770 PF02843 Phosphoribosylglycinamide synthetase, C domain SMN_0770 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SMN_0773 PF00013 KH domain SMN_0773 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SMN_0773 PF01138 3' exoribonuclease family, domain 1 SMN_0773 PF03725 3' exoribonuclease family, domain 2 SMN_0773 PF00575 S1 RNA binding domain SMN_0774 PF00137 ATP synthase subunit C SMN_0777 PF00072 Response regulator receiver domain SMN_0777 PF00486 Transcriptional regulatory protein, C terminal SMN_0779 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMN_0782 PF00364 Biotin-requiring enzyme SMN_0783 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit SMN_0784 PF01293 Phosphoenolpyruvate carboxykinase SMN_0785 PF00206 Lyase SMN_0785 PF14698 Argininosuccinate lyase C-terminal SMN_0786 PF01230 HIT domain SMN_0787 PF01409 tRNA synthetases class II core domain (F) SMN_0787 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SMN_0788 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SMN_0788 PF03147 Ferredoxin-fold anticodon binding domain SMN_0788 PF03484 tRNA synthetase B5 domain SMN_0788 PF01588 Putative tRNA binding domain SMN_0789 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMN_0790 PF02401 LytB protein SMN_0791 PF00575 S1 RNA binding domain SMN_0793 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMN_0793 PF01842 ACT domain SMN_0793 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMN_0795 PF13533 Biotin-lipoyl like SMN_0796 PF00873 AcrB/AcrD/AcrF family SMN_0797 PF00873 AcrB/AcrD/AcrF family SMN_0800 PF01132 Elongation factor P (EF-P) OB domain SMN_0800 PF09285 Elongation factor P, C-terminal SMN_0800 PF08207 Elongation factor P (EF-P) KOW-like domain SMN_0801 PF00672 HAMP domain SMN_0801 PF16591 Helical bimodular sensor domain SMN_0801 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0803 PF16591 Helical bimodular sensor domain SMN_0803 PF00672 HAMP domain SMN_0803 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0811 PF00990 Diguanylate cyclase, GGDEF domain SMN_0811 PF00563 EAL domain SMN_0811 PF03707 Bacterial signalling protein N terminal repeat SMN_0817 PF00563 EAL domain SMN_0817 PF00990 Diguanylate cyclase, GGDEF domain SMN_0817 PF08495 FIST N domain SMN_0817 PF10442 FIST C domain SMN_0818 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMN_0819 PF02321 Outer membrane efflux protein SMN_0820 PF00873 AcrB/AcrD/AcrF family SMN_0821 PF00873 AcrB/AcrD/AcrF family SMN_0822 PF00529 HlyD membrane-fusion protein of T1SS SMN_0822 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMN_0823 PF08447 PAS fold SMN_0823 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0824 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0824 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0824 PF00672 HAMP domain SMN_0824 PF17200 Single Cache domain 2 SMN_0824 PF17200 Single Cache domain 2 SMN_0824 PF00672 HAMP domain SMN_0826 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMN_0826 PF14579 Helix-hairpin-helix motif SMN_0826 PF02811 PHP domain SMN_0826 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMN_0827 PF00571 CBS domain SMN_0829 PF07556 Protein of unknown function (DUF1538) SMN_0830 PF00512 His Kinase A (phospho-acceptor) domain SMN_0830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0832 PF02386 Cation transport protein SMN_0833 PF02080 TrkA-C domain SMN_0833 PF02254 TrkA-N domain SMN_0836 PF01098 Cell cycle protein SMN_0837 PF01479 S4 domain SMN_0837 PF00849 RNA pseudouridylate synthase SMN_0839 PF02390 Putative methyltransferase SMN_0840 PF00005 ABC transporter SMN_0843 PF00696 Amino acid kinase family SMN_0844 PF01192 RNA polymerase Rpb6 SMN_0845 PF04607 Region found in RelA / SpoT proteins SMN_0845 PF02824 TGS domain SMN_0845 PF13291 ACT domain SMN_0846 PF00579 tRNA synthetases class I (W and Y) SMN_0847 PF03060 Nitronate monooxygenase SMN_0848 PF01520 N-acetylmuramoyl-L-alanine amidase SMN_0851 PF01336 OB-fold nucleic acid binding domain SMN_0851 PF02938 GAD domain SMN_0851 PF00152 tRNA synthetases class II (D, K and N) SMN_0852 PF00990 Diguanylate cyclase, GGDEF domain SMN_0852 PF00072 Response regulator receiver domain SMN_0854 PF01513 ATP-NAD kinase SMN_0855 PF13476 AAA domain SMN_0856 PF02652 L-lactate permease SMN_0857 PF00990 Diguanylate cyclase, GGDEF domain SMN_0858 PF01026 TatD related DNase SMN_0859 PF01476 LysM domain SMN_0859 PF05257 CHAP domain SMN_0860 PF03330 Lytic transglycolase SMN_0860 PF05036 Sporulation related domain SMN_0861 PF00475 Imidazoleglycerol-phosphate dehydratase SMN_0865 PF01926 50S ribosome-binding GTPase SMN_0868 PF03717 Penicillin-binding Protein dimerisation domain SMN_0868 PF00905 Penicillin binding protein transpeptidase domain SMN_0870 PF02130 Uncharacterized protein family UPF0054 SMN_0872 PF09334 tRNA synthetases class I (M) SMN_0872 PF01588 Putative tRNA binding domain SMN_0872 PF00133 tRNA synthetases class I (I, L, M and V) SMN_0874 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SMN_0879 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMN_0880 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMN_0880 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SMN_0882 PF03264 NapC/NirT cytochrome c family, N-terminal region SMN_0883 PF02335 Cytochrome c552 SMN_0884 PF05140 ResB-like family SMN_0884 PF01578 Cytochrome C assembly protein SMN_0888 PF06821 Serine hydrolase SMN_0890 PF04172 LrgB-like family SMN_0893 PF01636 Phosphotransferase enzyme family SMN_0895 PF09335 SNARE associated Golgi protein SMN_0897 PF09335 SNARE associated Golgi protein SMN_0898 PF13847 Methyltransferase domain SMN_0899 PF00892 EamA-like transporter family SMN_0900 PF00037 4Fe-4S binding domain SMN_0905 PF02272 DHHA1 domain SMN_0905 PF01411 tRNA synthetases class II (A) SMN_0905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMN_0906 PF06100 MCRA family SMN_0908 PF00672 HAMP domain SMN_0908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0908 PF07730 Histidine kinase SMN_0909 PF00072 Response regulator receiver domain SMN_0909 PF00196 Bacterial regulatory proteins, luxR family SMN_0911 PF01040 UbiA prenyltransferase family SMN_0912 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMN_0912 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMN_0914 PF00510 Cytochrome c oxidase subunit III SMN_0915 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMN_0915 PF00510 Cytochrome c oxidase subunit III SMN_0922 PF06250 YhcG PDDEXK nuclease domain SMN_0922 PF17761 DUF1016 N-terminal domain SMN_0925 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMN_0925 PF00384 Molybdopterin oxidoreductase SMN_0925 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0925 PF01568 Molydopterin dinucleotide binding domain SMN_0926 PF12838 4Fe-4S dicluster domain SMN_0926 PF12800 4Fe-4S binding domain SMN_0927 PF13237 4Fe-4S dicluster domain SMN_0927 PF12801 4Fe-4S binding domain SMN_0928 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SMN_0929 PF00037 4Fe-4S binding domain SMN_0929 PF12800 4Fe-4S binding domain SMN_0929 PF13187 4Fe-4S dicluster domain SMN_0932 PF01926 50S ribosome-binding GTPase SMN_0932 PF06071 Protein of unknown function (DUF933) SMN_0936 PF07715 TonB-dependent Receptor Plug Domain SMN_0936 PF07660 Secretin and TonB N terminus short domain SMN_0936 PF00593 TonB dependent receptor SMN_0938 PF04542 Sigma-70 region 2 SMN_0938 PF08281 Sigma-70, region 4 SMN_0941 PF00384 Molybdopterin oxidoreductase SMN_0941 PF01568 Molydopterin dinucleotide binding domain SMN_0941 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_0944 PF00072 Response regulator receiver domain SMN_0944 PF00486 Transcriptional regulatory protein, C terminal SMN_0946 PF02743 Cache domain SMN_0946 PF00512 His Kinase A (phospho-acceptor) domain SMN_0946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_0947 PF00034 Cytochrome c SMN_0948 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMN_0948 PF00355 Rieske [2Fe-2S] domain SMN_0949 PF00032 Cytochrome b(C-terminal)/b6/petD SMN_0949 PF00033 Cytochrome b/b6/petB SMN_0951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0951 PF13426 PAS domain SMN_0951 PF08447 PAS fold SMN_0953 PF08495 FIST N domain SMN_0953 PF10442 FIST C domain SMN_0953 PF00990 Diguanylate cyclase, GGDEF domain SMN_0953 PF00563 EAL domain SMN_0954 PF02666 Phosphatidylserine decarboxylase SMN_0955 PF00270 DEAD/DEAH box helicase SMN_0955 PF03880 DbpA RNA binding domain SMN_0955 PF00271 Helicase conserved C-terminal domain SMN_0958 PF13309 HTH domain SMN_0958 PF08348 YheO-like PAS domain SMN_0959 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMN_0959 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMN_0962 PF13247 4Fe-4S dicluster domain SMN_0964 PF00682 HMGL-like SMN_0964 PF08502 LeuA allosteric (dimerisation) domain SMN_0965 PF03473 MOSC domain SMN_0966 PF01810 LysE type translocator SMN_0967 PF11849 Domain of unknown function (DUF3369) SMN_0968 PF12729 Four helix bundle sensory module for signal transduction SMN_0968 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_0968 PF00672 HAMP domain SMN_0969 PF01709 Transcriptional regulator SMN_0971 PF16868 NMT1-like family SMN_0974 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SMN_0974 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SMN_0976 PF00118 TCP-1/cpn60 chaperonin family SMN_0977 PF00166 Chaperonin 10 Kd subunit SMN_0980 PF13359 DDE superfamily endonuclease SMN_0980 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMN_0981 PF13359 DDE superfamily endonuclease SMN_0981 PF13613 Helix-turn-helix of DDE superfamily endonuclease SMN_0985 PF13276 HTH-like domain SMN_0985 PF00665 Integrase core domain SMN_0985 PF13333 Integrase core domain SMN_0986 PF01527 Transposase SMN_0987 PF03062 MBOAT, membrane-bound O-acyltransferase family SMN_0991 PF00665 Integrase core domain SMN_0991 PF02796 Helix-turn-helix domain of resolvase SMN_0992 PF01695 IstB-like ATP binding protein SMN_0996 PF04174 A circularly permuted ATPgrasp SMN_0997 PF01841 Transglutaminase-like superfamily SMN_0997 PF08379 Bacterial transglutaminase-like N-terminal region SMN_1001 PF08379 Bacterial transglutaminase-like N-terminal region SMN_1001 PF01841 Transglutaminase-like superfamily SMN_1003 PF14403 Circularly permuted ATP-grasp type 2 SMN_1005 PF06738 Putative threonine/serine exporter SMN_1006 PF06738 Putative threonine/serine exporter SMN_1006 PF12821 Threonine/Serine exporter, ThrE SMN_1007 PF01814 Hemerythrin HHE cation binding domain SMN_1008 PF00403 Heavy-metal-associated domain SMN_1009 PF01022 Bacterial regulatory protein, arsR family SMN_1010 PF01810 LysE type translocator SMN_1012 PF00464 Serine hydroxymethyltransferase SMN_1013 PF12833 Helix-turn-helix domain SMN_1013 PF02805 Metal binding domain of Ada SMN_1013 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMN_1013 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMN_1014 PF02311 AraC-like ligand binding domain SMN_1014 PF12833 Helix-turn-helix domain SMN_1015 PF02627 Carboxymuconolactone decarboxylase family SMN_1017 PF17202 Single cache domain 3 SMN_1017 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1017 PF00672 HAMP domain SMN_1018 PF02743 Cache domain SMN_1018 PF00672 HAMP domain SMN_1018 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1019 PF02581 Thiamine monophosphate synthase SMN_1022 PF03006 Haemolysin-III related SMN_1024 PF01810 LysE type translocator SMN_1025 PF02754 Cysteine-rich domain SMN_1026 PF11870 Domain of unknown function (DUF3390) SMN_1026 PF02589 LUD domain SMN_1026 PF13183 4Fe-4S dicluster domain SMN_1027 PF02589 LUD domain SMN_1028 PF00892 EamA-like transporter family SMN_1032 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMN_1032 PF14579 Helix-hairpin-helix motif SMN_1032 PF11490 DNA polymerase III polC-type N-terminus II SMN_1032 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMN_1032 PF02811 PHP domain SMN_1032 PF00929 Exonuclease SMN_1037 PF01717 Cobalamin-independent synthase, Catalytic domain SMN_1037 PF08267 Cobalamin-independent synthase, N-terminal domain SMN_1039 PF01435 Peptidase family M48 SMN_1043 PF01739 CheR methyltransferase, SAM binding domain SMN_1044 PF01339 CheB methylesterase SMN_1044 PF00072 Response regulator receiver domain SMN_1045 PF00883 Cytosol aminopeptidase family, catalytic domain SMN_1045 PF02789 Cytosol aminopeptidase family, N-terminal domain SMN_1046 PF09335 SNARE associated Golgi protein SMN_1047 PF00291 Pyridoxal-phosphate dependent enzyme SMN_1048 PF00156 Phosphoribosyl transferase domain SMN_1050 PF02502 Ribose/Galactose Isomerase SMN_1051 PF02163 Peptidase family M50 SMN_1052 PF10502 Signal peptidase, peptidase S26 SMN_1053 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SMN_1053 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SMN_1073 PF00202 Aminotransferase class-III SMN_1076 PF04055 Radical SAM superfamily SMN_1077 PF05193 Peptidase M16 inactive domain SMN_1078 PF00271 Helicase conserved C-terminal domain SMN_1078 PF04851 Type III restriction enzyme, res subunit SMN_1084 PF02623 FliW protein SMN_1085 PF13525 Outer membrane lipoprotein SMN_1086 PF00004 ATPase family associated with various cellular activities (AAA) SMN_1086 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMN_1086 PF05362 Lon protease (S16) C-terminal proteolytic domain SMN_1087 PF01084 Ribosomal protein S18 SMN_1088 PF00436 Single-strand binding protein family SMN_1089 PF01250 Ribosomal protein S6 SMN_1090 PF06144 DNA polymerase III, delta subunit SMN_1091 PF00773 RNB domain SMN_1093 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SMN_1093 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SMN_1094 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMN_1095 PF03776 Septum formation topological specificity factor MinE SMN_1097 PF18255 DNA processing protein A sterile alpha motif domain SMN_1097 PF02481 DNA recombination-mediator protein A SMN_1098 PF01925 Sulfite exporter TauE/SafE SMN_1099 PF04073 Aminoacyl-tRNA editing domain SMN_1102 PF03313 Serine dehydratase alpha chain SMN_1102 PF03315 Serine dehydratase beta chain SMN_1103 PF03652 Holliday junction resolvase SMN_1104 PF03458 UPF0126 domain SMN_1105 PF00202 Aminotransferase class-III SMN_1107 PF05690 Thiazole biosynthesis protein ThiG SMN_1107 PF02597 ThiS family SMN_1108 PF01648 4'-phosphopantetheinyl transferase superfamily SMN_1109 PF03748 Flagellar basal body-associated protein FliL SMN_1110 PF18073 Rubredoxin metal binding domain SMN_1111 PF00448 SRP54-type protein, GTPase domain SMN_1112 PF00578 AhpC/TSA family SMN_1114 PF00013 KH domain SMN_1114 PF01966 HD domain SMN_1114 PF12072 Domain of unknown function (DUF3552) SMN_1115 PF00664 ABC transporter transmembrane region SMN_1115 PF00005 ABC transporter SMN_1117 PF09335 SNARE associated Golgi protein SMN_1119 PF01758 Sodium Bile acid symporter family SMN_1120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMN_1123 PF00486 Transcriptional regulatory protein, C terminal SMN_1123 PF00072 Response regulator receiver domain SMN_1124 PF01584 CheW-like domain SMN_1124 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1124 PF01627 Hpt domain SMN_1124 PF00072 Response regulator receiver domain SMN_1125 PF00563 EAL domain SMN_1125 PF08448 PAS fold SMN_1125 PF00990 Diguanylate cyclase, GGDEF domain SMN_1126 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMN_1126 PF00512 His Kinase A (phospho-acceptor) domain SMN_1126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1127 PF00512 His Kinase A (phospho-acceptor) domain SMN_1127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1129 PF04073 Aminoacyl-tRNA editing domain SMN_1137 PF01867 CRISPR associated protein Cas1 SMN_1159 PF00872 Transposase, Mutator family SMN_1163 PF03958 Bacterial type II/III secretion system short domain SMN_1163 PF00263 Bacterial type II and III secretion system protein SMN_1168 PF00925 GTP cyclohydrolase II SMN_1168 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMN_1169 PF00999 Sodium/hydrogen exchanger family SMN_1169 PF02254 TrkA-N domain SMN_1170 PF00672 HAMP domain SMN_1170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1170 PF00512 His Kinase A (phospho-acceptor) domain SMN_1171 PF00149 Calcineurin-like phosphoesterase SMN_1172 PF04264 YceI-like domain SMN_1175 PF00005 ABC transporter SMN_1178 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SMN_1179 PF01850 PIN domain SMN_1183 PF00872 Transposase, Mutator family SMN_1189 PF01327 Polypeptide deformylase SMN_1190 PF03061 Thioesterase superfamily SMN_1192 PF03167 Uracil DNA glycosylase superfamily SMN_1195 PF00682 HMGL-like SMN_1196 PF04055 Radical SAM superfamily SMN_1196 PF02579 Dinitrogenase iron-molybdenum cofactor SMN_1197 PF00072 Response regulator receiver domain SMN_1197 PF01966 HD domain SMN_1198 PF00072 Response regulator receiver domain SMN_1198 PF00486 Transcriptional regulatory protein, C terminal SMN_1199 PF00990 Diguanylate cyclase, GGDEF domain SMN_1199 PF10442 FIST C domain SMN_1199 PF08495 FIST N domain SMN_1199 PF00563 EAL domain SMN_1200 PF00989 PAS fold SMN_1200 PF00512 His Kinase A (phospho-acceptor) domain SMN_1200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1201 PF00486 Transcriptional regulatory protein, C terminal SMN_1201 PF00072 Response regulator receiver domain SMN_1202 PF00753 Metallo-beta-lactamase superfamily SMN_1202 PF00258 Flavodoxin SMN_1203 PF02579 Dinitrogenase iron-molybdenum cofactor SMN_1207 PF02574 Homocysteine S-methyltransferase SMN_1208 PF00171 Aldehyde dehydrogenase family SMN_1209 PF12795 Mechanosensitive ion channel porin domain SMN_1209 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMN_1209 PF00924 Mechanosensitive ion channel SMN_1210 PF00512 His Kinase A (phospho-acceptor) domain SMN_1210 PF01627 Hpt domain SMN_1210 PF00072 Response regulator receiver domain SMN_1210 PF17149 Periplasmic sensor domain found in signal transduction proteins SMN_1210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1210 PF00672 HAMP domain SMN_1211 PF09308 LuxQ, periplasmic SMN_1211 PF00072 Response regulator receiver domain SMN_1211 PF00512 His Kinase A (phospho-acceptor) domain SMN_1211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1212 PF00072 Response regulator receiver domain SMN_1214 PF02579 Dinitrogenase iron-molybdenum cofactor SMN_1215 PF03270 Protein of unknown function, DUF269 SMN_1217 PF03206 Nitrogen fixation protein NifW SMN_1218 PF04319 NifZ domain SMN_1220 PF00111 2Fe-2S iron-sulfur cluster binding domain SMN_1221 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMN_1221 PF04552 Sigma-54, DNA binding domain SMN_1221 PF04963 Sigma-54 factor, core binding domain SMN_1228 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SMN_1230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMN_1234 PF00905 Penicillin binding protein transpeptidase domain SMN_1235 PF03707 Bacterial signalling protein N terminal repeat SMN_1235 PF00563 EAL domain SMN_1235 PF00990 Diguanylate cyclase, GGDEF domain SMN_1240 PF01863 Protein of unknown function DUF45 SMN_1243 PF02567 Phenazine biosynthesis-like protein SMN_1247 PF00561 alpha/beta hydrolase fold SMN_1250 PF13536 Putative multidrug resistance efflux transporter SMN_1252 PF00990 Diguanylate cyclase, GGDEF domain SMN_1252 PF17158 Membrane-associated sensor, integral membrane domain SMN_1253 PF00155 Aminotransferase class I and II SMN_1253 PF00392 Bacterial regulatory proteins, gntR family SMN_1257 PF01063 Amino-transferase class IV SMN_1260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1260 PF00672 HAMP domain SMN_1261 PF00672 HAMP domain SMN_1261 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1262 PF01568 Molydopterin dinucleotide binding domain SMN_1262 PF18364 Molybdopterin oxidoreductase N-terminal domain SMN_1262 PF00384 Molybdopterin oxidoreductase SMN_1264 PF00512 His Kinase A (phospho-acceptor) domain SMN_1264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMN_1266 PF00486 Transcriptional regulatory protein, C terminal SMN_1266 PF00072 Response regulator receiver domain SMN_1270 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SMN_1276 PF00072 Response regulator receiver domain SMN_1276 PF00486 Transcriptional regulatory protein, C terminal SMN_1278 PF00583 Acetyltransferase (GNAT) family SMN_1278 PF00795 Carbon-nitrogen hydrolase SMN_1285 PF00486 Transcriptional regulatory protein, C terminal SMN_1285 PF00072 Response regulator receiver domain SMN_1286 PF00512 His Kinase A (phospho-acceptor) domain SMN_1286 PF13426 PAS domain SMN_1286 PF00672 HAMP domain SMN_1286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1288 PF01699 Sodium/calcium exchanger protein SMN_1289 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_1289 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMN_1290 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SMN_1291 PF13247 4Fe-4S dicluster domain SMN_1292 PF00374 Nickel-dependent hydrogenase SMN_1292 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMN_1293 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMN_1295 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMN_1298 PF05977 Transmembrane secretion effector SMN_1302 PF02589 LUD domain SMN_1303 PF11870 Domain of unknown function (DUF3390) SMN_1303 PF13183 4Fe-4S dicluster domain SMN_1303 PF02589 LUD domain SMN_1304 PF00155 Aminotransferase class I and II SMN_1305 PF13533 Biotin-lipoyl like SMN_1306 PF00005 ABC transporter SMN_1308 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SMN_1309 PF01850 PIN domain SMN_1314 PF00248 Aldo/keto reductase family SMN_1315 PF00890 FAD binding domain SMN_1315 PF02910 Fumarate reductase flavoprotein C-term SMN_1316 PF06988 NifT/FixU protein SMN_1317 PF02954 Bacterial regulatory protein, Fis family SMN_1317 PF13185 GAF domain SMN_1317 PF00158 Sigma-54 interaction domain SMN_1322 PF00586 AIR synthase related protein, N-terminal domain SMN_1322 PF02769 AIR synthase related protein, C-terminal domain SMN_1323 PF01142 tRNA pseudouridine synthase D (TruD) SMN_1324 PF02254 TrkA-N domain SMN_1324 PF00999 Sodium/hydrogen exchanger family SMN_1324 PF02080 TrkA-C domain SMN_1326 PF03707 Bacterial signalling protein N terminal repeat SMN_1326 PF00990 Diguanylate cyclase, GGDEF domain SMN_1326 PF00563 EAL domain SMN_1328 PF00990 Diguanylate cyclase, GGDEF domain SMN_1329 PF02581 Thiamine monophosphate synthase SMN_1329 PF08543 Phosphomethylpyrimidine kinase SMN_1331 PF02110 Hydroxyethylthiazole kinase family SMN_1333 PF02535 ZIP Zinc transporter SMN_1335 PF01966 HD domain SMN_1336 PF02743 Cache domain SMN_1336 PF00672 HAMP domain SMN_1336 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1337 PF02743 Cache domain SMN_1337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1337 PF00672 HAMP domain SMN_1338 PF12706 Beta-lactamase superfamily domain SMN_1338 PF00753 Metallo-beta-lactamase superfamily SMN_1340 PF12848 ABC transporter SMN_1340 PF16326 ABC transporter C-terminal domain SMN_1340 PF00005 ABC transporter SMN_1341 PF05736 OprF membrane domain SMN_1341 PF00691 OmpA family SMN_1342 PF01618 MotA/TolQ/ExbB proton channel family SMN_1343 PF00440 Bacterial regulatory proteins, tetR family SMN_1343 PF08361 MAATS-type transcriptional repressor, C-terminal region SMN_1344 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMN_1345 PF00873 AcrB/AcrD/AcrF family SMN_1346 PF02321 Outer membrane efflux protein SMN_1349 PF00881 Nitroreductase family SMN_1350 PF00881 Nitroreductase family SMN_1351 PF03109 ABC1 family SMN_1355 PF17092 Penicillin-binding protein OB-like domain SMN_1355 PF00912 Transglycosylase SMN_1355 PF00905 Penicillin binding protein transpeptidase domain SMN_1360 PF14535 AMP-binding enzyme C-terminal domain SMN_1360 PF00501 AMP-binding enzyme SMN_1364 PF00474 Sodium:solute symporter family SMN_1366 PF02561 Flagellar protein FliS SMN_1367 PF02465 Flagellar hook-associated protein 2 N-terminus SMN_1367 PF07195 Flagellar hook-associated protein 2 C-terminus SMN_1371 PF02119 Flagellar P-ring protein SMN_1375 PF07196 Flagellin hook IN motif SMN_1375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMN_1376 PF12911 N-terminal TM domain of oligopeptide transport permease C SMN_1376 PF00528 Binding-protein-dependent transport system inner membrane component SMN_1378 PF01740 STAS domain SMN_1378 PF00916 Sulfate permease family SMN_1379 PF01361 Tautomerase enzyme SMN_1380 PF00119 ATP synthase A chain SMN_1383 PF02637 GatB domain SMN_1383 PF02934 GatB/GatE catalytic domain SMN_1384 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SMN_1384 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SMN_1385 PF00933 Glycosyl hydrolase family 3 N terminal domain SMN_1387 PF01416 tRNA pseudouridine synthase SMN_1389 PF01478 Type IV leader peptidase family SMN_1389 PF06750 Bacterial Peptidase A24 N-terminal domain SMN_1391 PF04127 DNA / pantothenate metabolism flavoprotein SMN_1391 PF02441 Flavoprotein SMN_1392 PF12804 MobA-like NTP transferase domain SMN_1392 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_1393 PF00813 FliP family SMN_1394 PF01263 Aldose 1-epimerase SMN_1395 PF01638 HxlR-like helix-turn-helix SMN_1396 PF02525 Flavodoxin-like fold SMN_1398 PF05987 Bacterial protein of unknown function (DUF898) SMN_1401 PF13194 Domain of unknown function (DUF4010) SMN_1402 PF08497 Radical SAM N-terminal SMN_1402 PF04055 Radical SAM superfamily SMN_1403 PF00342 Phosphoglucose isomerase SMN_1407 PF00374 Nickel-dependent hydrogenase SMN_1408 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SMN_1408 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMN_1408 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMN_1409 PF00374 Nickel-dependent hydrogenase SMN_1410 PF01292 Prokaryotic cytochrome b561 SMN_1411 PF01750 Hydrogenase maturation protease SMN_1413 PF00708 Acylphosphatase SMN_1413 PF07503 HypF finger SMN_1413 PF17788 HypF Kae1-like domain SMN_1413 PF01300 Telomere recombination SMN_1414 PF01402 Ribbon-helix-helix protein, copG family SMN_1414 PF08753 NikR C terminal nickel binding domain SMN_1415 PF07715 TonB-dependent Receptor Plug Domain SMN_1415 PF00593 TonB dependent receptor SMN_1418 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMN_1419 PF01455 HupF/HypC family SMN_1420 PF01924 Hydrogenase formation hypA family SMN_1421 PF02769 AIR synthase related protein, C-terminal domain SMN_1421 PF00586 AIR synthase related protein, N-terminal domain SMN_1422 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SMN_1423 PF00583 Acetyltransferase (GNAT) family SMN_1424 PF13419 Haloacid dehalogenase-like hydrolase SMN_1427 PF03971 Monomeric isocitrate dehydrogenase SMN_1428 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMN_1428 PF00056 lactate/malate dehydrogenase, NAD binding domain SMN_1429 PF00486 Transcriptional regulatory protein, C terminal SMN_1429 PF00072 Response regulator receiver domain SMN_1430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1430 PF00989 PAS fold SMN_1430 PF01627 Hpt domain SMN_1430 PF00512 His Kinase A (phospho-acceptor) domain SMN_1430 PF00072 Response regulator receiver domain SMN_1430 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMN_1432 PF00939 Sodium:sulfate symporter transmembrane region SMN_1433 PF02754 Cysteine-rich domain SMN_1434 PF01565 FAD binding domain SMN_1434 PF02913 FAD linked oxidases, C-terminal domain SMN_1435 PF00549 CoA-ligase SMN_1435 PF08442 ATP-grasp domain SMN_1436 PF02629 CoA binding domain SMN_1436 PF00549 CoA-ligase SMN_1438 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SMN_1438 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SMN_1438 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SMN_1439 PF00205 Thiamine pyrophosphate enzyme, central domain SMN_1439 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMN_1439 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMN_1444 PF10415 Fumarase C C-terminus SMN_1444 PF00206 Lyase SMN_1447 PF01914 MarC family integral membrane protein SMN_1451 PF01168 Alanine racemase, N-terminal domain SMN_1452 PF02163 Peptidase family M50 SMN_1452 PF17820 PDZ domain SMN_1453 PF01066 CDP-alcohol phosphatidyltransferase SMN_1455 PF00701 Dihydrodipicolinate synthetase family SMN_1457 PF01180 Dihydroorotate dehydrogenase SMN_1458 PF00005 ABC transporter SMN_1458 PF00664 ABC transporter transmembrane region SMN_1459 PF01406 tRNA synthetases class I (C) catalytic domain SMN_1459 PF09190 DALR domain SMN_1460 PF03023 Lipid II flippase MurJ SMN_1462 PF07499 RuvA, C-terminal domain SMN_1462 PF01330 RuvA N terminal domain SMN_1463 PF07478 D-ala D-ala ligase C-terminus SMN_1463 PF01820 D-ala D-ala ligase N-terminus SMN_1466 PF00708 Acylphosphatase SMN_1467 PF08245 Mur ligase middle domain SMN_1467 PF01225 Mur ligase family, catalytic domain SMN_1467 PF02875 Mur ligase family, glutamate ligase domain SMN_1468 PF01515 Phosphate acetyl/butaryl transferase SMN_1468 PF07085 DRTGG domain SMN_1469 PF00871 Acetokinase family SMN_1471 PF02107 Flagellar L-ring protein SMN_1473 PF00482 Type II secretion system (T2SS), protein F SMN_1474 PF00437 Type II/IV secretion system protein SMN_1477 PF00263 Bacterial type II and III secretion system protein SMN_1477 PF03958 Bacterial type II/III secretion system short domain SMN_1481 PF07650 KH domain SMN_1481 PF01926 50S ribosome-binding GTPase SMN_1482 PF10431 C-terminal, D2-small domain, of ClpB protein SMN_1482 PF07724 AAA domain (Cdc48 subfamily) SMN_1483 PF00227 Proteasome subunit SMN_1484 PF01281 Ribosomal protein L9, N-terminal domain SMN_1484 PF03948 Ribosomal protein L9, C-terminal domain SMN_1486 PF00764 Arginosuccinate synthase SMN_1487 PF01479 S4 domain SMN_1488 PF02885 Glycosyl transferase family, helical bundle domain SMN_1488 PF00591 Glycosyl transferase family, a/b domain SMN_1489 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SMN_1490 PF00005 ABC transporter SMN_1490 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMN_1491 PF04963 Sigma-54 factor, core binding domain SMN_1491 PF04552 Sigma-54, DNA binding domain SMN_1491 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMN_1493 PF04376 Arginine-tRNA-protein transferase, N terminus SMN_1493 PF04377 Arginine-tRNA-protein transferase, C terminus SMN_1496 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SMN_1500 PF01966 HD domain SMN_1504 PF02743 Cache domain SMN_1504 PF00672 HAMP domain SMN_1504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1505 PF00072 Response regulator receiver domain SMN_1508 PF02954 Bacterial regulatory protein, Fis family SMN_1508 PF00158 Sigma-54 interaction domain SMN_1508 PF00072 Response regulator receiver domain SMN_1511 PF00890 FAD binding domain SMN_1511 PF14537 Cytochrome c3 SMN_1512 PF00925 GTP cyclohydrolase II SMN_1513 PF00925 GTP cyclohydrolase II SMN_1513 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMN_1514 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMN_1519 PF00989 PAS fold SMN_1519 PF00512 His Kinase A (phospho-acceptor) domain SMN_1519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1520 PF01966 HD domain SMN_1520 PF00072 Response regulator receiver domain SMN_1523 PF00072 Response regulator receiver domain SMN_1523 PF13426 PAS domain SMN_1523 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1527 PF12800 4Fe-4S binding domain SMN_1527 PF12838 4Fe-4S dicluster domain SMN_1529 PF03186 CobD/Cbib protein SMN_1530 PF00155 Aminotransferase class I and II SMN_1531 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SMN_1532 PF07685 CobB/CobQ-like glutamine amidotransferase domain SMN_1535 PF02654 Cobalamin-5-phosphate synthase SMN_1536 PF00300 Histidine phosphatase superfamily (branch 1) SMN_1537 PF06180 Cobalt chelatase (CbiK) SMN_1539 PF00005 ABC transporter SMN_1541 PF02570 Precorrin-8X methylmutase SMN_1542 PF01888 CbiD SMN_1544 PF05175 Methyltransferase small domain SMN_1545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMN_1546 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMN_1547 PF11761 Cobalamin biosynthesis central region SMN_1547 PF11760 Cobalamin synthesis G N-terminal SMN_1547 PF01890 Cobalamin synthesis G C-terminus SMN_1548 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMN_1548 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SMN_1550 PF02571 Precorrin-6x reductase CbiJ/CobK SMN_1551 PF00005 ABC transporter SMN_1551 PF00664 ABC transporter transmembrane region SMN_1552 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMN_1552 PF07685 CobB/CobQ-like glutamine amidotransferase domain SMN_1553 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMN_1553 PF10414 Sirohaem synthase dimerisation region SMN_1553 PF14824 Sirohaem biosynthesis protein central SMN_1554 PF00440 Bacterial regulatory proteins, tetR family SMN_1554 PF18665 Tetracyclin repressor-like, C-terminal domain SMN_1555 PF01695 IstB-like ATP binding protein SMN_1556 PF02796 Helix-turn-helix domain of resolvase SMN_1556 PF00665 Integrase core domain SMN_1577 PF00589 Phage integrase family SMN_1577 PF13356 Arm DNA-binding domain SMN_1579 PF00216 Bacterial DNA-binding protein SMN_1580 PF00669 Bacterial flagellin N-terminal helical region SMN_1580 PF00700 Bacterial flagellin C-terminal helical region SMN_1581 PF17854 FtsK alpha domain SMN_1581 PF01580 FtsK/SpoIIIE family SMN_1581 PF09397 Ftsk gamma domain SMN_1582 PF00330 Aconitase family (aconitate hydratase) SMN_1582 PF11791 Aconitate B N-terminal domain SMN_1582 PF06434 Aconitate hydratase 2 N-terminus SMN_1583 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMN_1584 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SMN_1584 PF02896 PEP-utilising enzyme, TIM barrel domain SMN_1584 PF00391 PEP-utilising enzyme, mobile domain SMN_1585 PF07690 Major Facilitator Superfamily SMN_1589 PF05958 tRNA (Uracil-5-)-methyltransferase SMN_1590 PF02743 Cache domain SMN_1590 PF00672 HAMP domain SMN_1590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1591 PF13380 CoA binding domain SMN_1592 PF13291 ACT domain SMN_1592 PF00291 Pyridoxal-phosphate dependent enzyme SMN_1594 PF00005 ABC transporter SMN_1595 PF00528 Binding-protein-dependent transport system inner membrane component SMN_1596 PF00528 Binding-protein-dependent transport system inner membrane component SMN_1597 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMN_1598 PF01474 Class-II DAHP synthetase family SMN_1601 PF09335 SNARE associated Golgi protein SMN_1603 PF00005 ABC transporter SMN_1603 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMN_1604 PF00171 Aldehyde dehydrogenase family SMN_1605 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_1607 PF05175 Methyltransferase small domain SMN_1608 PF03692 Putative zinc- or iron-chelating domain SMN_1610 PF00218 Indole-3-glycerol phosphate synthase SMN_1614 PF01891 Cobalt uptake substrate-specific transmembrane region SMN_1614 PF13190 PDGLE domain SMN_1617 PF00005 ABC transporter SMN_1618 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMN_1619 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SMN_1622 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_1624 PF02541 Ppx/GppA phosphatase family SMN_1625 PF00205 Thiamine pyrophosphate enzyme, central domain SMN_1625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMN_1625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMN_1626 PF10369 Small subunit of acetolactate synthase SMN_1627 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_1627 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SMN_1629 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_1629 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMN_1630 PF00155 Aminotransferase class I and II SMN_1631 PF00148 Nitrogenase component 1 type Oxidoreductase SMN_1632 PF00158 Sigma-54 interaction domain SMN_1632 PF02954 Bacterial regulatory protein, Fis family SMN_1632 PF01590 GAF domain SMN_1634 PF00148 Nitrogenase component 1 type Oxidoreductase SMN_1635 PF03139 Vanadium/alternative nitrogenase delta subunit SMN_1636 PF00148 Nitrogenase component 1 type Oxidoreductase SMN_1637 PF06426 Serine acetyltransferase, N-terminal SMN_1637 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_1638 PF17944 Arginine decarboxylase C-terminal helical extension SMN_1638 PF17810 Arginine decarboxylase helical bundle domain SMN_1638 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMN_1639 PF13393 Histidyl-tRNA synthetase SMN_1639 PF03129 Anticodon binding domain SMN_1640 PF02223 Thymidylate kinase SMN_1641 PF01467 Cytidylyltransferase-like SMN_1642 PF02441 Flavoprotein SMN_1644 PF00672 HAMP domain SMN_1644 PF16591 Helical bimodular sensor domain SMN_1644 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1645 PF03453 MoeA N-terminal region (domain I and II) SMN_1645 PF00994 Probable molybdopterin binding domain SMN_1645 PF03454 MoeA C-terminal region (domain IV) SMN_1646 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMN_1653 PF01883 Iron-sulfur cluster assembly protein SMN_1653 PF10609 NUBPL iron-transfer P-loop NTPase SMN_1655 PF02001 Protein of unknown function DUF134 SMN_1656 PF00731 AIR carboxylase SMN_1657 PF02540 NAD synthase SMN_1658 PF01969 Protein of unknown function DUF111 SMN_1659 PF09861 Lactate racemase N-terminal domain SMN_1660 PF05681 Fumarate hydratase (Fumerase) SMN_1660 PF05683 Fumarase C-terminus SMN_1661 PF05683 Fumarase C-terminus SMN_1661 PF05681 Fumarate hydratase (Fumerase) SMN_1662 PF03605 Anaerobic c4-dicarboxylate membrane transporter SMN_1663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1663 PF00512 His Kinase A (phospho-acceptor) domain SMN_1663 PF09308 LuxQ, periplasmic SMN_1663 PF00072 Response regulator receiver domain SMN_1664 PF00486 Transcriptional regulatory protein, C terminal SMN_1664 PF00072 Response regulator receiver domain SMN_1668 PF18644 Phage integrase SAM-like domain SMN_1668 PF00589 Phage integrase family SMN_1669 PF01702 Queuine tRNA-ribosyltransferase SMN_1671 PF01761 3-dehydroquinate synthase SMN_1673 PF04055 Radical SAM superfamily SMN_1673 PF00919 Uncharacterized protein family UPF0004 SMN_1674 PF00004 ATPase family associated with various cellular activities (AAA) SMN_1674 PF17862 AAA+ lid domain SMN_1674 PF06480 FtsH Extracellular SMN_1674 PF01434 Peptidase family M41 SMN_1678 PF00296 Luciferase-like monooxygenase SMN_1681 PF08279 HTH domain SMN_1681 PF13280 WYL domain SMN_1682 PF00849 RNA pseudouridylate synthase SMN_1682 PF01479 S4 domain SMN_1683 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMN_1683 PF00205 Thiamine pyrophosphate enzyme, central domain SMN_1683 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMN_1685 PF04960 Glutaminase SMN_1687 PF12833 Helix-turn-helix domain SMN_1687 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SMN_1689 PF00440 Bacterial regulatory proteins, tetR family SMN_1689 PF08359 YsiA-like protein, C-terminal region SMN_1692 PF00873 AcrB/AcrD/AcrF family SMN_1695 PF16591 Helical bimodular sensor domain SMN_1695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_1695 PF00672 HAMP domain SMN_1716 PF01131 DNA topoisomerase SMN_1716 PF01751 Toprim domain SMN_1716 PF13368 Topoisomerase C-terminal repeat SMN_1716 PF01396 Topoisomerase DNA binding C4 zinc finger SMN_1720 PF11798 IMS family HHH motif SMN_1720 PF11799 impB/mucB/samB family C-terminal domain SMN_1720 PF00817 impB/mucB/samB family SMN_1743 PF00872 Transposase, Mutator family SMN_1754 PF00589 Phage integrase family SMN_1754 PF18644 Phage integrase SAM-like domain SMN_1759 PF00216 Bacterial DNA-binding protein SMN_1767 PF02086 D12 class N6 adenine-specific DNA methyltransferase SMN_1781 PF03824 High-affinity nickel-transport protein SMN_1797 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMN_1810 PF00436 Single-strand binding protein family SMN_1817 PF00145 C-5 cytosine-specific DNA methylase SMN_1853 PF00593 TonB dependent receptor SMN_1853 PF07715 TonB-dependent Receptor Plug Domain SMN_1875 PF18644 Phage integrase SAM-like domain SMN_1875 PF00589 Phage integrase family SMN_1877 PF02915 Rubrerythrin SMN_1879 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SMN_1880 PF03900 Porphobilinogen deaminase, C-terminal domain SMN_1880 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SMN_1883 PF04073 Aminoacyl-tRNA editing domain SMN_1883 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMN_1883 PF03129 Anticodon binding domain SMN_1884 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SMN_1884 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SMN_1884 PF01488 Shikimate / quinate 5-dehydrogenase SMN_1885 PF00348 Polyprenyl synthetase SMN_1888 PF01053 Cys/Met metabolism PLP-dependent enzyme SMN_1889 PF02082 Transcriptional regulator SMN_1890 PF00291 Pyridoxal-phosphate dependent enzyme SMN_1891 PF00990 Diguanylate cyclase, GGDEF domain SMN_1892 PF00133 tRNA synthetases class I (I, L, M and V) SMN_1892 PF08264 Anticodon-binding domain of tRNA SMN_1892 PF10458 Valyl tRNA synthetase tRNA binding arm SMN_1893 PF03480 Bacterial extracellular solute-binding protein, family 7 SMN_1894 PF00994 Probable molybdopterin binding domain SMN_1896 PF00815 Histidinol dehydrogenase SMN_1898 PF01116 Fructose-bisphosphate aldolase class-II SMN_1900 PF00730 HhH-GPD superfamily base excision DNA repair protein SMN_1900 PF00633 Helix-hairpin-helix motif SMN_1902 PF07687 Peptidase dimerisation domain SMN_1902 PF01546 Peptidase family M20/M25/M40 SMN_1904 PF08003 Protein of unknown function (DUF1698) SMN_1907 PF02540 NAD synthase SMN_1908 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMN_1909 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SMN_1910 PF00696 Amino acid kinase family SMN_1911 PF00291 Pyridoxal-phosphate dependent enzyme SMN_1912 PF02348 Cytidylyltransferase SMN_1915 PF11412 Disulphide bond corrector protein DsbC SMN_1915 PF02683 Cytochrome C biogenesis protein transmembrane region SMN_1916 PF03976 Polyphosphate kinase 2 (PPK2) SMN_1917 PF00012 Hsp70 protein SMN_1918 PF01025 GrpE SMN_1922 PF00312 Ribosomal protein S15 SMN_1923 PF02082 Transcriptional regulator SMN_1924 PF00771 FHIPEP family SMN_1927 PF13649 Methyltransferase domain SMN_1928 PF00990 Diguanylate cyclase, GGDEF domain SMN_1929 PF01687 Riboflavin kinase SMN_1929 PF06574 FAD synthetase SMN_1930 PF01479 S4 domain SMN_1930 PF00163 Ribosomal protein S4/S9 N-terminal domain SMN_1931 PF01653 NAD-dependent DNA ligase adenylation domain SMN_1931 PF12826 Helix-hairpin-helix motif SMN_1931 PF03120 NAD-dependent DNA ligase OB-fold domain SMN_1931 PF00533 BRCA1 C Terminus (BRCT) domain SMN_1932 PF01925 Sulfite exporter TauE/SafE SMN_1934 PF00809 Pterin binding enzyme SMN_1935 PF12169 DNA polymerase III subunits gamma and tau domain III SMN_1937 PF01842 ACT domain SMN_1937 PF13840 ACT domain SMN_1937 PF00696 Amino acid kinase family SMN_1938 PF00293 NUDIX domain SMN_1939 PF04055 Radical SAM superfamily SMN_1939 PF06969 HemN C-terminal domain SMN_1940 PF02254 TrkA-N domain SMN_1940 PF00999 Sodium/hydrogen exchanger family SMN_1941 PF13411 MerR HTH family regulatory protein SMN_1942 PF00684 DnaJ central domain SMN_1942 PF00226 DnaJ domain SMN_1942 PF01556 DnaJ C terminal domain SMN_1943 PF13180 PDZ domain SMN_1944 PF00486 Transcriptional regulatory protein, C terminal SMN_1944 PF00072 Response regulator receiver domain SMN_1945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_1945 PF00512 His Kinase A (phospho-acceptor) domain SMN_1948 PF07516 SecA Wing and Scaffold domain SMN_1948 PF01043 SecA preprotein cross-linking domain SMN_1948 PF07517 SecA DEAD-like domain SMN_1948 PF02810 SEC-C motif SMN_1948 PF00271 Helicase conserved C-terminal domain SMN_1950 PF00563 EAL domain SMN_1950 PF03707 Bacterial signalling protein N terminal repeat SMN_1950 PF00990 Diguanylate cyclase, GGDEF domain SMN_1951 PF06965 Na+/H+ antiporter 1 SMN_1952 PF12631 MnmE helical domain SMN_1952 PF10396 GTP-binding protein TrmE N-terminus SMN_1952 PF01926 50S ribosome-binding GTPase SMN_1954 PF02096 60Kd inner membrane protein SMN_1954 PF14849 YidC periplasmic domain SMN_1955 PF01809 Putative membrane protein insertion efficiency factor SMN_1956 PF00550 Phosphopantetheine attachment site SMN_1956 PF00668 Condensation domain SMN_1956 PF00501 AMP-binding enzyme SMN_1956 PF13193 AMP-binding enzyme C-terminal domain SMN_1957 PF13941 MutL protein SMN_1958 PF06368 Methylaspartate mutase E chain (MutE) SMN_1959 PF02310 B12 binding domain SMN_1984 PF03737 Aldolase/RraA SMN_1987 PF00004 ATPase family associated with various cellular activities (AAA) SMN_1987 PF10431 C-terminal, D2-small domain, of ClpB protein SMN_1987 PF07724 AAA domain (Cdc48 subfamily) SMN_1987 PF17871 AAA lid domain SMN_1987 PF02861 Clp amino terminal domain, pathogenicity island component SMN_1988 PF03572 Peptidase family S41 SMN_1988 PF13180 PDZ domain SMN_1989 PF01259 SAICAR synthetase SMN_1990 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SMN_1993 PF01553 Acyltransferase SMN_1994 PF00183 Hsp90 protein SMN_1995 PF13419 Haloacid dehalogenase-like hydrolase SMN_1999 PF03190 Protein of unknown function, DUF255 SMN_2000 PF00581 Rhodanese-like domain SMN_2001 PF13361 UvrD-like helicase C-terminal domain SMN_2001 PF00580 UvrD/REP helicase N-terminal domain SMN_2008 PF05970 PIF1-like helicase SMN_2008 PF02689 Helicase SMN_2013 PF08534 Redoxin SMN_2015 PF00403 Heavy-metal-associated domain SMN_2016 PF00403 Heavy-metal-associated domain SMN_2017 PF01966 HD domain SMN_2018 PF02646 RmuC family SMN_2020 PF01795 MraW methylase family SMN_2021 PF00202 Aminotransferase class-III SMN_2022 PF13145 PPIC-type PPIASE domain SMN_2023 PF02491 SHS2 domain inserted in FTSA SMN_2024 PF12327 FtsZ family, C-terminal domain SMN_2024 PF00091 Tubulin/FtsZ family, GTPase domain SMN_2026 PF05175 Methyltransferase small domain SMN_2026 PF17827 PrmC N-terminal domain SMN_2027 PF01435 Peptidase family M48 SMN_2028 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2028 PF00672 HAMP domain SMN_2028 PF12729 Four helix bundle sensory module for signal transduction SMN_2030 PF00672 HAMP domain SMN_2030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2032 PF01883 Iron-sulfur cluster assembly protein SMN_2035 PF02142 MGS-like domain SMN_2035 PF01808 AICARFT/IMPCHase bienzyme SMN_2036 PF02600 Disulfide bond formation protein DsbB SMN_2038 PF03061 Thioesterase superfamily SMN_2039 PF05099 Tellurite resistance protein TerB SMN_2039 PF00226 DnaJ domain SMN_2040 PF00155 Aminotransferase class I and II SMN_2044 PF02769 AIR synthase related protein, C-terminal domain SMN_2044 PF00586 AIR synthase related protein, N-terminal domain SMN_2044 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SMN_2045 PF00990 Diguanylate cyclase, GGDEF domain SMN_2045 PF00563 EAL domain SMN_2045 PF03707 Bacterial signalling protein N terminal repeat SMN_2046 PF02416 mttA/Hcf106 family SMN_2047 PF00902 Sec-independent protein translocase protein (TatC) SMN_2048 PF02547 Queuosine biosynthesis protein SMN_2052 PF00872 Transposase, Mutator family SMN_2055 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SMN_2057 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2060 PF00072 Response regulator receiver domain SMN_2061 PF00672 HAMP domain SMN_2061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2061 PF00512 His Kinase A (phospho-acceptor) domain SMN_2061 PF01627 Hpt domain SMN_2061 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMN_2061 PF00072 Response regulator receiver domain SMN_2062 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMN_2062 PF00753 Metallo-beta-lactamase superfamily SMN_2062 PF10996 Beta-Casp domain SMN_2063 PF00501 AMP-binding enzyme SMN_2065 PF07715 TonB-dependent Receptor Plug Domain SMN_2065 PF00593 TonB dependent receptor SMN_2066 PF13493 Domain of unknown function (DUF4118) SMN_2066 PF13492 GAF domain SMN_2066 PF00512 His Kinase A (phospho-acceptor) domain SMN_2066 PF02702 Osmosensitive K+ channel His kinase sensor domain SMN_2066 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2067 PF00486 Transcriptional regulatory protein, C terminal SMN_2067 PF00072 Response regulator receiver domain SMN_2068 PF02386 Cation transport protein SMN_2069 PF02080 TrkA-C domain SMN_2069 PF02254 TrkA-N domain SMN_2070 PF01641 SelR domain SMN_2071 PF00571 CBS domain SMN_2071 PF03471 Transporter associated domain SMN_2071 PF01595 Cyclin M transmembrane N-terminal domain SMN_2073 PF12804 MobA-like NTP transferase domain SMN_2074 PF13478 XdhC Rossmann domain SMN_2074 PF02625 XdhC and CoxI family SMN_2075 PF14535 AMP-binding enzyme C-terminal domain SMN_2075 PF00501 AMP-binding enzyme SMN_2076 PF13186 Iron-sulfur cluster-binding domain SMN_2076 PF04055 Radical SAM superfamily SMN_2078 PF01209 ubiE/COQ5 methyltransferase family SMN_2080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMN_2080 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMN_2080 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMN_2081 PF01799 [2Fe-2S] binding domain SMN_2081 PF00111 2Fe-2S iron-sulfur cluster binding domain SMN_2081 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMN_2081 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMN_2082 PF13756 Stimulus-sensing domain SMN_2082 PF13755 Sensor N-terminal transmembrane domain SMN_2082 PF00512 His Kinase A (phospho-acceptor) domain SMN_2082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2082 PF00672 HAMP domain SMN_2083 PF01627 Hpt domain SMN_2083 PF00486 Transcriptional regulatory protein, C terminal SMN_2083 PF00072 Response regulator receiver domain SMN_2085 PF01292 Prokaryotic cytochrome b561 SMN_2088 PF00072 Response regulator receiver domain SMN_2088 PF00486 Transcriptional regulatory protein, C terminal SMN_2090 PF01545 Cation efflux family SMN_2090 PF16916 Dimerisation domain of Zinc Transporter SMN_2094 PF00593 TonB dependent receptor SMN_2094 PF07715 TonB-dependent Receptor Plug Domain SMN_2096 PF00924 Mechanosensitive ion channel SMN_2097 PF00982 Glycosyltransferase family 20 SMN_2097 PF05116 Sucrose-6F-phosphate phosphohydrolase SMN_2103 PF18764 Nitrous oxide reductase propeller repeat SMN_2103 PF18793 Nitrous oxide reductase propeller repeat 2 SMN_2103 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMN_2106 PF02146 Sir2 family SMN_2108 PF02574 Homocysteine S-methyltransferase SMN_2108 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMN_2108 PF02607 B12 binding domain SMN_2108 PF02310 B12 binding domain SMN_2108 PF00809 Pterin binding enzyme SMN_2109 PF03781 Sulfatase-modifying factor enzyme 1 SMN_2110 PF13458 Periplasmic binding protein SMN_2111 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2111 PF02743 Cache domain SMN_2111 PF00672 HAMP domain SMN_2112 PF01810 LysE type translocator SMN_2113 PF00892 EamA-like transporter family SMN_2114 PF00884 Sulfatase SMN_2115 PF00909 Ammonium Transporter Family SMN_2116 PF00543 Nitrogen regulatory protein P-II SMN_2118 PF07728 AAA domain (dynein-related subfamily) SMN_2118 PF12102 Domain of unknown function (DUF3578) SMN_2121 PF01966 HD domain SMN_2121 PF00072 Response regulator receiver domain SMN_2122 PF02092 Glycyl-tRNA synthetase beta subunit SMN_2125 PF00484 Carbonic anhydrase SMN_2126 PF06865 Pyrimidine/purine nucleoside phosphorylase SMN_2127 PF03707 Bacterial signalling protein N terminal repeat SMN_2127 PF00990 Diguanylate cyclase, GGDEF domain SMN_2127 PF00563 EAL domain SMN_2130 PF00588 SpoU rRNA Methylase family SMN_2131 PF00551 Formyl transferase SMN_2131 PF01842 ACT domain SMN_2132 PF01743 Poly A polymerase head domain SMN_2132 PF13735 tRNA nucleotidyltransferase domain 2 putative SMN_2132 PF12627 Probable RNA and SrmB- binding site of polymerase A SMN_2135 PF00180 Isocitrate/isopropylmalate dehydrogenase SMN_2136 PF00694 Aconitase C-terminal domain SMN_2137 PF00005 ABC transporter SMN_2138 PF00873 AcrB/AcrD/AcrF family SMN_2141 PF03372 Endonuclease/Exonuclease/phosphatase family SMN_2144 PF16591 Helical bimodular sensor domain SMN_2144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2144 PF00672 HAMP domain SMN_2145 PF00293 NUDIX domain SMN_2145 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SMN_2145 PF09297 NADH pyrophosphatase zinc ribbon domain SMN_2146 PF00174 Oxidoreductase molybdopterin binding domain SMN_2147 PF01794 Ferric reductase like transmembrane component SMN_2148 PF03264 NapC/NirT cytochrome c family, N-terminal region SMN_2149 PF02335 Cytochrome c552 SMN_2150 PF02743 Cache domain SMN_2150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2150 PF00672 HAMP domain SMN_2151 PF00672 HAMP domain SMN_2151 PF00512 His Kinase A (phospho-acceptor) domain SMN_2151 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2151 PF18698 Histidine kinase sensor domain SMN_2152 PF00486 Transcriptional regulatory protein, C terminal SMN_2152 PF00072 Response regulator receiver domain SMN_2154 PF00672 HAMP domain SMN_2154 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2154 PF02743 Cache domain SMN_2155 PF02743 Cache domain SMN_2155 PF00672 HAMP domain SMN_2155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2156 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SMN_2158 PF00990 Diguanylate cyclase, GGDEF domain SMN_2158 PF08448 PAS fold SMN_2160 PF09962 Uncharacterized conserved protein (DUF2196) SMN_2161 PF00271 Helicase conserved C-terminal domain SMN_2161 PF00570 HRDC domain SMN_2161 PF16124 RecQ zinc-binding SMN_2161 PF09382 RQC domain SMN_2161 PF00270 DEAD/DEAH box helicase SMN_2164 PF00270 DEAD/DEAH box helicase SMN_2164 PF00271 Helicase conserved C-terminal domain SMN_2166 PF13426 PAS domain SMN_2166 PF00563 EAL domain SMN_2166 PF00990 Diguanylate cyclase, GGDEF domain SMN_2167 PF00512 His Kinase A (phospho-acceptor) domain SMN_2167 PF08521 Two-component sensor kinase N-terminal SMN_2167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2168 PF00072 Response regulator receiver domain SMN_2168 PF00486 Transcriptional regulatory protein, C terminal SMN_2174 PF00501 AMP-binding enzyme SMN_2174 PF13193 AMP-binding enzyme C-terminal domain SMN_2174 PF16177 Acetyl-coenzyme A synthetase N-terminus SMN_2176 PF00285 Citrate synthase, C-terminal domain SMN_2177 PF03972 MmgE/PrpD family SMN_2179 PF08274 PhnA Zinc-Ribbon SMN_2179 PF03831 PhnA domain SMN_2181 PF03591 AzlC protein SMN_2182 PF00460 Flagella basal body rod protein SMN_2182 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMN_2183 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMN_2183 PF00460 Flagella basal body rod protein SMN_2184 PF00140 Sigma-70 factor, region 1.2 SMN_2184 PF04545 Sigma-70, region 4 SMN_2184 PF04542 Sigma-70 region 2 SMN_2184 PF04539 Sigma-70 region 3 SMN_2186 PF01638 HxlR-like helix-turn-helix SMN_2189 PF00501 AMP-binding enzyme SMN_2189 PF16177 Acetyl-coenzyme A synthetase N-terminus SMN_2189 PF13193 AMP-binding enzyme C-terminal domain SMN_2190 PF00474 Sodium:solute symporter family SMN_2191 PF04341 Protein of unknown function, DUF485 SMN_2192 PF00486 Transcriptional regulatory protein, C terminal SMN_2192 PF00072 Response regulator receiver domain SMN_2194 PF04371 Porphyromonas-type peptidyl-arginine deiminase SMN_2195 PF16916 Dimerisation domain of Zinc Transporter SMN_2195 PF01545 Cation efflux family SMN_2196 PF07664 Ferrous iron transport protein B C terminus SMN_2196 PF02421 Ferrous iron transport protein B SMN_2196 PF07670 Nucleoside recognition SMN_2197 PF04023 FeoA domain SMN_2198 PF00795 Carbon-nitrogen hydrolase SMN_2202 PF03459 TOBE domain SMN_2203 PF00293 NUDIX domain SMN_2204 PF01544 CorA-like Mg2+ transporter protein SMN_2205 PF04225 Opacity-associated protein A LysM-like domain SMN_2205 PF01551 Peptidase family M23 SMN_2207 PF01565 FAD binding domain SMN_2207 PF02913 FAD linked oxidases, C-terminal domain SMN_2208 PF03631 Virulence factor BrkB SMN_2210 PF00772 DnaB-like helicase N terminal domain SMN_2210 PF03796 DnaB-like helicase C terminal domain SMN_2210 PF00772 DnaB-like helicase N terminal domain SMN_2210 PF03796 DnaB-like helicase C terminal domain SMN_2211 PF04551 GcpE protein SMN_2212 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SMN_2212 PF18074 Primosomal protein N C-terminal domain SMN_2212 PF00270 DEAD/DEAH box helicase SMN_2212 PF00271 Helicase conserved C-terminal domain SMN_2212 PF17764 3′ DNA-binding domain (3′BD) SMN_2213 PF00114 Pilin (bacterial filament) SMN_2213 PF07963 Prokaryotic N-terminal methylation motif SMN_2214 PF00114 Pilin (bacterial filament) SMN_2214 PF07963 Prokaryotic N-terminal methylation motif SMN_2217 PF00271 Helicase conserved C-terminal domain SMN_2217 PF12344 Ultra-violet resistance protein B SMN_2217 PF17757 UvrB interaction domain SMN_2217 PF04851 Type III restriction enzyme, res subunit SMN_2217 PF02151 UvrB/uvrC motif SMN_2219 PF13090 Polyphosphate kinase C-terminal domain 2 SMN_2219 PF17941 Polyphosphate kinase C-terminal domain 1 SMN_2219 PF13089 Polyphosphate kinase N-terminal domain SMN_2219 PF02503 Polyphosphate kinase middle domain SMN_2220 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_2221 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMN_2221 PF00929 Exonuclease SMN_2221 PF02811 PHP domain SMN_2221 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMN_2221 PF14579 Helix-hairpin-helix motif SMN_2222 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SMN_2223 PF00834 Ribulose-phosphate 3 epimerase family SMN_2224 PF00830 Ribosomal L28 family SMN_2225 PF01960 ArgJ family SMN_2228 PF13277 YmdB-like protein SMN_2229 PF03461 TRCF domain SMN_2229 PF17757 UvrB interaction domain SMN_2229 PF00271 Helicase conserved C-terminal domain SMN_2229 PF00270 DEAD/DEAH box helicase SMN_2229 PF02559 CarD-like/TRCF domain SMN_2231 PF01551 Peptidase family M23 SMN_2231 PF04225 Opacity-associated protein A LysM-like domain SMN_2232 PF08245 Mur ligase middle domain SMN_2233 PF00990 Diguanylate cyclase, GGDEF domain SMN_2233 PF07694 5TMR of 5TMR-LYT SMN_2235 PF00133 tRNA synthetases class I (I, L, M and V) SMN_2235 PF13603 Leucyl-tRNA synthetase, Domain 2 SMN_2235 PF09334 tRNA synthetases class I (M) SMN_2236 PF07549 SecD/SecF GG Motif SMN_2236 PF02355 Protein export membrane protein SMN_2237 PF02355 Protein export membrane protein SMN_2238 PF02699 Preprotein translocase subunit SMN_2240 PF02773 S-adenosylmethionine synthetase, C-terminal domain SMN_2240 PF00438 S-adenosylmethionine synthetase, N-terminal domain SMN_2240 PF02772 S-adenosylmethionine synthetase, central domain SMN_2242 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SMN_2243 PF10431 C-terminal, D2-small domain, of ClpB protein SMN_2243 PF07724 AAA domain (Cdc48 subfamily) SMN_2243 PF02861 Clp amino terminal domain, pathogenicity island component SMN_2243 PF17871 AAA lid domain SMN_2243 PF00004 ATPase family associated with various cellular activities (AAA) SMN_2244 PF02617 ATP-dependent Clp protease adaptor protein ClpS SMN_2246 PF01668 SmpB protein SMN_2247 PF00288 GHMP kinases N terminal domain SMN_2248 PF02599 Global regulator protein family SMN_2249 PF01509 TruB family pseudouridylate synthase (N terminal domain) SMN_2250 PF13361 UvrD-like helicase C-terminal domain SMN_2250 PF00580 UvrD/REP helicase N-terminal domain SMN_2251 PF03466 LysR substrate binding domain SMN_2251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMN_2255 PF00425 chorismate binding enzyme SMN_2256 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMN_2256 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMN_2260 PF12833 Helix-turn-helix domain SMN_2261 PF00155 Aminotransferase class I and II SMN_2261 PF00392 Bacterial regulatory proteins, gntR family SMN_2264 PF01245 Ribosomal protein L19 SMN_2265 PF01746 tRNA (Guanine-1)-methyltransferase SMN_2266 PF01782 RimM N-terminal domain SMN_2268 PF00886 Ribosomal protein S16 SMN_2269 PF00448 SRP54-type protein, GTPase domain SMN_2269 PF02881 SRP54-type protein, helical bundle domain SMN_2269 PF02978 Signal peptide binding domain SMN_2270 PF00849 RNA pseudouridylate synthase SMN_2271 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SMN_2273 PF01784 NIF3 (NGG1p interacting factor 3) SMN_2274 PF02091 Glycyl-tRNA synthetase alpha subunit SMN_2276 PF00731 AIR carboxylase SMN_2279 PF02811 PHP domain SMN_2280 PF00120 Glutamine synthetase, catalytic domain SMN_2280 PF03951 Glutamine synthetase, beta-Grasp domain SMN_2281 PF17092 Penicillin-binding protein OB-like domain SMN_2281 PF00912 Transglycosylase SMN_2281 PF00905 Penicillin binding protein transpeptidase domain SMN_2282 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMN_2282 PF00005 ABC transporter SMN_2283 PF00155 Aminotransferase class I and II SMN_2284 PF02545 Maf-like protein SMN_2286 PF01411 tRNA synthetases class II (A) SMN_2286 PF02272 DHHA1 domain SMN_2286 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMN_2288 PF00072 Response regulator receiver domain SMN_2288 PF00486 Transcriptional regulatory protein, C terminal SMN_2289 PF13426 PAS domain SMN_2289 PF13188 PAS domain SMN_2289 PF00989 PAS fold SMN_2289 PF00512 His Kinase A (phospho-acceptor) domain SMN_2289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2290 PF01568 Molydopterin dinucleotide binding domain SMN_2290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_2290 PF00384 Molybdopterin oxidoreductase SMN_2291 PF13247 4Fe-4S dicluster domain SMN_2291 PF12800 4Fe-4S binding domain SMN_2292 PF04976 DMSO reductase anchor subunit (DmsC) SMN_2293 PF02613 Nitrate reductase delta subunit SMN_2297 PF00762 Ferrochelatase SMN_2299 PF02049 Flagellar hook-basal body complex protein FliE SMN_2300 PF00460 Flagella basal body rod protein SMN_2300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMN_2301 PF00460 Flagella basal body rod protein SMN_2302 PF01098 Cell cycle protein SMN_2303 PF03033 Glycosyltransferase family 28 N-terminal domain SMN_2303 PF04101 Glycosyltransferase family 28 C-terminal domain SMN_2306 PF07670 Nucleoside recognition SMN_2316 PF00117 Glutamine amidotransferase class-I SMN_2317 PF07690 Major Facilitator Superfamily SMN_2318 PF01553 Acyltransferase SMN_2318 PF00501 AMP-binding enzyme SMN_2319 PF01022 Bacterial regulatory protein, arsR family SMN_2323 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SMN_2324 PF04223 Citrate lyase, alpha subunit (CitF) SMN_2325 PF03328 HpcH/HpaI aldolase/citrate lyase family SMN_2326 PF06857 Malonate decarboxylase delta subunit (MdcD) SMN_2327 PF08218 Citrate lyase ligase C-terminal domain SMN_2328 PF05145 Transition state regulatory protein AbrB SMN_2330 PF17203 Single cache domain 3 SMN_2330 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SMN_2330 PF00989 PAS fold SMN_2330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2331 PF12431 Transcriptional regulator SMN_2331 PF08279 HTH domain SMN_2331 PF00072 Response regulator receiver domain SMN_2332 PF01970 Tripartite tricarboxylate transporter TctA family SMN_2335 PF00512 His Kinase A (phospho-acceptor) domain SMN_2335 PF00072 Response regulator receiver domain SMN_2335 PF01627 Hpt domain SMN_2335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMN_2335 PF00672 HAMP domain SMN_2335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2336 PF00072 Response regulator receiver domain SMN_2337 PF07690 Major Facilitator Superfamily SMN_2338 PF00156 Phosphoribosyl transferase domain SMN_2339 PF00860 Permease family SMN_2340 PF04055 Radical SAM superfamily SMN_2343 PF00291 Pyridoxal-phosphate dependent enzyme SMN_2345 PF01966 HD domain SMN_2345 PF01909 Nucleotidyltransferase domain SMN_2345 PF08335 GlnD PII-uridylyltransferase SMN_2346 PF01380 SIS domain SMN_2347 PF00990 Diguanylate cyclase, GGDEF domain SMN_2353 PF00027 Cyclic nucleotide-binding domain SMN_2353 PF00520 Ion transport protein SMN_2358 PF00005 ABC transporter SMN_2358 PF12848 ABC transporter SMN_2360 PF03707 Bacterial signalling protein N terminal repeat SMN_2360 PF00990 Diguanylate cyclase, GGDEF domain SMN_2360 PF00563 EAL domain SMN_2361 PF13247 4Fe-4S dicluster domain SMN_2362 PF00361 Proton-conducting membrane transporter SMN_2363 PF00146 NADH dehydrogenase SMN_2364 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMN_2365 PF00361 Proton-conducting membrane transporter SMN_2365 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMN_2366 PF00374 Nickel-dependent hydrogenase SMN_2366 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMN_2366 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMN_2368 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMN_2373 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMN_2373 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMN_2373 PF02824 TGS domain SMN_2373 PF03129 Anticodon binding domain SMN_2375 PF00899 ThiF family SMN_2376 PF00990 Diguanylate cyclase, GGDEF domain SMN_2376 PF00072 Response regulator receiver domain SMN_2379 PF14602 Hexapeptide repeat of succinyl-transferase SMN_2379 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle SMN_2380 PF01883 Iron-sulfur cluster assembly protein SMN_2380 PF10609 NUBPL iron-transfer P-loop NTPase SMN_2381 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SMN_2381 PF02542 YgbB family SMN_2383 PF01747 ATP-sulfurylase SMN_2383 PF14306 PUA-like domain SMN_2386 PF04264 YceI-like domain SMN_2387 PF09186 Domain of unknown function (DUF1949) SMN_2387 PF01205 Uncharacterized protein family UPF0029 SMN_2388 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMN_2388 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMN_2389 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2391 PF08402 TOBE domain SMN_2391 PF00005 ABC transporter SMN_2392 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMN_2395 PF03459 TOBE domain SMN_2396 PF00768 D-alanyl-D-alanine carboxypeptidase SMN_2396 PF07943 Penicillin-binding protein 5, C-terminal domain SMN_2397 PF14748 Pyrroline-5-carboxylate reductase dimerisation SMN_2397 PF03807 NADP oxidoreductase coenzyme F420-dependent SMN_2398 PF02687 FtsX-like permease family SMN_2398 PF12704 MacB-like periplasmic core domain SMN_2398 PF00005 ABC transporter SMN_2399 PF00005 ABC transporter SMN_2399 PF02687 FtsX-like permease family SMN_2399 PF12704 MacB-like periplasmic core domain SMN_2400 PF13533 Biotin-lipoyl like SMN_2401 PF02321 Outer membrane efflux protein SMN_2404 PF05552 Conserved TM helix SMN_2404 PF00924 Mechanosensitive ion channel SMN_2410 PF02311 AraC-like ligand binding domain SMN_2410 PF12833 Helix-turn-helix domain SMN_2412 PF08212 Lipocalin-like domain SMN_2420 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SMN_2421 PF01029 NusB family SMN_2422 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMN_2425 PF00793 DAHP synthetase I family SMN_2426 PF00892 EamA-like transporter family SMN_2427 PF00924 Mechanosensitive ion channel SMN_2428 PF01926 50S ribosome-binding GTPase SMN_2428 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SMN_2429 PF01202 Shikimate kinase SMN_2430 PF00579 tRNA synthetases class I (W and Y) SMN_2431 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMN_2431 PF02403 Seryl-tRNA synthetase N-terminal domain SMN_2433 PF00682 HMGL-like SMN_2433 PF08502 LeuA allosteric (dimerisation) domain SMN_2434 PF01066 CDP-alcohol phosphatidyltransferase SMN_2436 PF01434 Peptidase family M41 SMN_2436 PF00004 ATPase family associated with various cellular activities (AAA) SMN_2436 PF17862 AAA+ lid domain SMN_2438 PF00072 Response regulator receiver domain SMN_2439 PF00977 Histidine biosynthesis protein SMN_2440 PF00117 Glutamine amidotransferase class-I SMN_2442 PF18527 STT3/PglB C-terminal beta-barrel domain SMN_2442 PF02516 Oligosaccharyl transferase STT3 subunit SMN_2443 PF02719 Polysaccharide biosynthesis protein SMN_2444 PF00953 Glycosyl transferase family 4 SMN_2446 PF00535 Glycosyl transferase family 2 SMN_2447 PF00534 Glycosyl transferases group 1 SMN_2448 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_2450 PF01370 NAD dependent epimerase/dehydratase family SMN_2451 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_2454 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMN_2455 PF01370 NAD dependent epimerase/dehydratase family SMN_2456 PF16363 GDP-mannose 4,6 dehydratase SMN_2457 PF00483 Nucleotidyl transferase SMN_2458 PF01370 NAD dependent epimerase/dehydratase family SMN_2460 PF16363 GDP-mannose 4,6 dehydratase SMN_2461 PF00483 Nucleotidyl transferase SMN_2461 PF01050 Mannose-6-phosphate isomerase SMN_2462 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMN_2462 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMN_2462 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMN_2463 PF14743 DNA ligase OB-like domain SMN_2463 PF01068 ATP dependent DNA ligase domain SMN_2464 PF16363 GDP-mannose 4,6 dehydratase SMN_2465 PF00483 Nucleotidyl transferase SMN_2466 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMN_2466 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMN_2466 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMN_2466 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMN_2475 PF13580 SIS domain SMN_2476 PF01467 Cytidylyltransferase-like SMN_2476 PF00294 pfkB family carbohydrate kinase SMN_2481 PF00403 Heavy-metal-associated domain SMN_2482 PF00563 EAL domain SMN_2482 PF08448 PAS fold SMN_2482 PF00990 Diguanylate cyclase, GGDEF domain SMN_2483 PF00892 EamA-like transporter family SMN_2484 PF00072 Response regulator receiver domain SMN_2485 PF08534 Redoxin SMN_2488 PF00677 Lumazine binding domain SMN_2489 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2489 PF02743 Cache domain SMN_2489 PF00672 HAMP domain SMN_2490 PF02626 Carboxyltransferase domain, subdomain A and B SMN_2492 PF03746 LamB/YcsF family SMN_2493 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMN_2496 PF00486 Transcriptional regulatory protein, C terminal SMN_2496 PF00072 Response regulator receiver domain SMN_2497 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2497 PF00672 HAMP domain SMN_2497 PF17200 Single Cache domain 2 SMN_2498 PF13932 GidA associated domain SMN_2498 PF01134 Glucose inhibited division protein A SMN_2499 PF00355 Rieske [2Fe-2S] domain SMN_2499 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMN_2500 PF00032 Cytochrome b(C-terminal)/b6/petD SMN_2500 PF00033 Cytochrome b/b6/petB SMN_2503 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SMN_2504 PF00109 Beta-ketoacyl synthase, N-terminal domain SMN_2504 PF02801 Beta-ketoacyl synthase, C-terminal domain SMN_2505 PF00550 Phosphopantetheine attachment site SMN_2507 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SMN_2507 PF01676 Metalloenzyme superfamily SMN_2508 PF00953 Glycosyl transferase family 4 SMN_2508 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SMN_2509 PF08245 Mur ligase middle domain SMN_2511 PF02397 Bacterial sugar transferase SMN_2513 PF00535 Glycosyl transferase family 2 SMN_2515 PF00106 short chain dehydrogenase SMN_2516 PF01565 FAD binding domain SMN_2516 PF04030 D-arabinono-1,4-lactone oxidase SMN_2518 PF01040 UbiA prenyltransferase family SMN_2519 PF00665 Integrase core domain SMN_2519 PF13333 Integrase core domain SMN_2519 PF13276 HTH-like domain SMN_2522 PF01757 Acyltransferase family SMN_2524 PF02463 RecF/RecN/SMC N terminal domain SMN_2534 PF08239 Bacterial SH3 domain SMN_2534 PF00005 ABC transporter SMN_2537 PF01061 ABC-2 type transporter SMN_2538 PF16363 GDP-mannose 4,6 dehydratase SMN_2539 PF04321 RmlD substrate binding domain SMN_2540 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SMN_2541 PF00483 Nucleotidyl transferase SMN_2542 PF16363 GDP-mannose 4,6 dehydratase SMN_2543 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_2543 PF01568 Molydopterin dinucleotide binding domain SMN_2543 PF00384 Molybdopterin oxidoreductase SMN_2545 PF13247 4Fe-4S dicluster domain SMN_2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2546 PF00512 His Kinase A (phospho-acceptor) domain SMN_2546 PF00989 PAS fold SMN_2546 PF08447 PAS fold SMN_2547 PF00486 Transcriptional regulatory protein, C terminal SMN_2547 PF00072 Response regulator receiver domain SMN_2548 PF00563 EAL domain SMN_2548 PF12792 CSS motif domain associated with EAL SMN_2551 PF03649 Uncharacterised protein family (UPF0014) SMN_2552 PF00289 Biotin carboxylase, N-terminal domain SMN_2552 PF02785 Biotin carboxylase C-terminal domain SMN_2552 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMN_2555 PF01384 Phosphate transporter family SMN_2556 PF00270 DEAD/DEAH box helicase SMN_2556 PF00271 Helicase conserved C-terminal domain SMN_2557 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SMN_2559 PF00005 ABC transporter SMN_2560 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2561 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2562 PF12849 PBP superfamily domain SMN_2563 PF00672 HAMP domain SMN_2563 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2563 PF17202 Single cache domain 3 SMN_2564 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SMN_2565 PF10397 Adenylosuccinate lyase C-terminus SMN_2565 PF00206 Lyase SMN_2566 PF00939 Sodium:sulfate symporter transmembrane region SMN_2567 PF02743 Cache domain SMN_2567 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2567 PF00672 HAMP domain SMN_2569 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2571 PF01895 PhoU domain SMN_2572 PF00486 Transcriptional regulatory protein, C terminal SMN_2572 PF00072 Response regulator receiver domain SMN_2573 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2573 PF00512 His Kinase A (phospho-acceptor) domain SMN_2573 PF11808 Phosphate regulon sensor protein PhoR SMN_2573 PF00989 PAS fold SMN_2574 PF03061 Thioesterase superfamily SMN_2580 PF01638 HxlR-like helix-turn-helix SMN_2581 PF02525 Flavodoxin-like fold SMN_2582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2582 PF00512 His Kinase A (phospho-acceptor) domain SMN_2583 PF06508 Queuosine biosynthesis protein QueC SMN_2584 PF04055 Radical SAM superfamily SMN_2589 PF02562 PhoH-like protein SMN_2591 PF07690 Major Facilitator Superfamily SMN_2592 PF07690 Major Facilitator Superfamily SMN_2593 PF02321 Outer membrane efflux protein SMN_2594 PF00873 AcrB/AcrD/AcrF family SMN_2595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMN_2595 PF00529 HlyD membrane-fusion protein of T1SS SMN_2598 PF01243 Pyridoxamine 5'-phosphate oxidase SMN_2599 PF00375 Sodium:dicarboxylate symporter family SMN_2600 PF02664 S-Ribosylhomocysteinase (LuxS) SMN_2605 PF10371 Domain of unknown function SMN_2605 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SMN_2605 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SMN_2605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMN_2605 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SMN_2606 PF13419 Haloacid dehalogenase-like hydrolase SMN_2608 PF05736 OprF membrane domain SMN_2608 PF00691 OmpA family SMN_2609 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMN_2611 PF03352 Methyladenine glycosylase SMN_2613 PF00465 Iron-containing alcohol dehydrogenase SMN_2615 PF00654 Voltage gated chloride channel SMN_2616 PF02222 ATP-grasp domain SMN_2619 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SMN_2620 PF00380 Ribosomal protein S9/S16 SMN_2621 PF00572 Ribosomal protein L13 SMN_2622 PF13361 UvrD-like helicase C-terminal domain SMN_2622 PF00580 UvrD/REP helicase N-terminal domain SMN_2622 PF12705 PD-(D/E)XK nuclease superfamily SMN_2627 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMN_2627 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SMN_2630 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMN_2631 PF00072 Response regulator receiver domain SMN_2631 PF00486 Transcriptional regulatory protein, C terminal SMN_2632 PF00512 His Kinase A (phospho-acceptor) domain SMN_2632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2634 PF00117 Glutamine amidotransferase class-I SMN_2634 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SMN_2638 PF00709 Adenylosuccinate synthetase SMN_2639 PF13393 Histidyl-tRNA synthetase SMN_2640 PF00266 Aminotransferase class-V SMN_2641 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2641 PF00672 HAMP domain SMN_2641 PF02743 Cache domain SMN_2642 PF00672 HAMP domain SMN_2642 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2643 PF13419 Haloacid dehalogenase-like hydrolase SMN_2644 PF02780 Transketolase, C-terminal domain SMN_2644 PF00456 Transketolase, thiamine diphosphate binding domain SMN_2644 PF02779 Transketolase, pyrimidine binding domain SMN_2645 PF00348 Polyprenyl synthetase SMN_2646 PF01471 Putative peptidoglycan binding domain SMN_2646 PF03572 Peptidase family S41 SMN_2646 PF13180 PDZ domain SMN_2647 PF02575 YbaB/EbfC DNA-binding family SMN_2648 PF02261 Aspartate decarboxylase SMN_2649 PF02875 Mur ligase family, glutamate ligase domain SMN_2649 PF08245 Mur ligase middle domain SMN_2652 PF01196 Ribosomal protein L17 SMN_2653 PF01000 RNA polymerase Rpb3/RpoA insert domain SMN_2653 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SMN_2653 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SMN_2654 PF01479 S4 domain SMN_2654 PF00163 Ribosomal protein S4/S9 N-terminal domain SMN_2655 PF00411 Ribosomal protein S11 SMN_2656 PF00416 Ribosomal protein S13/S18 SMN_2657 PF01176 Translation initiation factor 1A / IF-1 SMN_2658 PF00557 Metallopeptidase family M24 SMN_2659 PF00344 SecY translocase SMN_2660 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SMN_2661 PF00333 Ribosomal protein S5, N-terminal domain SMN_2661 PF03719 Ribosomal protein S5, C-terminal domain SMN_2662 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SMN_2663 PF00347 Ribosomal protein L6 SMN_2664 PF00410 Ribosomal protein S8 SMN_2665 PF00673 ribosomal L5P family C-terminus SMN_2665 PF00281 Ribosomal protein L5 SMN_2666 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SMN_2666 PF00467 KOW motif SMN_2667 PF00238 Ribosomal protein L14p/L23e SMN_2668 PF00366 Ribosomal protein S17 SMN_2669 PF00831 Ribosomal L29 protein SMN_2670 PF00252 Ribosomal protein L16p/L10e SMN_2671 PF00189 Ribosomal protein S3, C-terminal domain SMN_2671 PF07650 KH domain SMN_2672 PF00237 Ribosomal protein L22p/L17e SMN_2673 PF03947 Ribosomal Proteins L2, C-terminal domain SMN_2673 PF00181 Ribosomal Proteins L2, RNA binding domain SMN_2674 PF00276 Ribosomal protein L23 SMN_2675 PF00573 Ribosomal protein L4/L1 family SMN_2676 PF00297 Ribosomal protein L3 SMN_2677 PF00338 Ribosomal protein S10p/S20e SMN_2680 PF01351 Ribonuclease HII SMN_2681 PF03239 Iron permease FTR1 family SMN_2682 PF10634 Fe2+ transport protein SMN_2686 PF12704 MacB-like periplasmic core domain SMN_2686 PF02687 FtsX-like permease family SMN_2686 PF00005 ABC transporter SMN_2691 PF02421 Ferrous iron transport protein B SMN_2691 PF07670 Nucleoside recognition SMN_2691 PF07664 Ferrous iron transport protein B C terminus SMN_2692 PF01264 Chorismate synthase SMN_2693 PF00035 Double-stranded RNA binding motif SMN_2693 PF14622 Ribonuclease-III-like SMN_2694 PF00075 RNase H SMN_2696 PF01807 CHC2 zinc finger SMN_2696 PF08275 DNA primase catalytic core, N-terminal domain SMN_2696 PF13662 Toprim domain SMN_2696 PF16730 DnaG-primase C-terminal, helicase-binding domain SMN_2697 PF00764 Arginosuccinate synthase SMN_2698 PF00072 Response regulator receiver domain SMN_2700 PF03707 Bacterial signalling protein N terminal repeat SMN_2700 PF00990 Diguanylate cyclase, GGDEF domain SMN_2700 PF00563 EAL domain SMN_2701 PF00072 Response regulator receiver domain SMN_2702 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2702 PF08447 PAS fold SMN_2703 PF00072 Response regulator receiver domain SMN_2703 PF01339 CheB methylesterase SMN_2704 PF03975 CheD chemotactic sensory transduction SMN_2705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2705 PF00512 His Kinase A (phospho-acceptor) domain SMN_2705 PF00672 HAMP domain SMN_2706 PF03705 CheR methyltransferase, all-alpha domain SMN_2706 PF01739 CheR methyltransferase, SAM binding domain SMN_2708 PF02203 Tar ligand binding domain homologue SMN_2708 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2708 PF00672 HAMP domain SMN_2709 PF01584 CheW-like domain SMN_2711 PF00226 DnaJ domain SMN_2711 PF01556 DnaJ C terminal domain SMN_2711 PF00684 DnaJ central domain SMN_2713 PF02796 Helix-turn-helix domain of resolvase SMN_2713 PF00665 Integrase core domain SMN_2714 PF01695 IstB-like ATP binding protein SMN_2726 PF00403 Heavy-metal-associated domain SMN_2732 PF07715 TonB-dependent Receptor Plug Domain SMN_2732 PF00593 TonB dependent receptor SMN_2733 PF00072 Response regulator receiver domain SMN_2733 PF00486 Transcriptional regulatory protein, C terminal SMN_2734 PF07568 Histidine kinase SMN_2734 PF12282 Signal transduction histidine kinase SMN_2734 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2736 PF04023 FeoA domain SMN_2736 PF07664 Ferrous iron transport protein B C terminus SMN_2736 PF17910 FeoB cytosolic helical domain SMN_2736 PF02421 Ferrous iron transport protein B SMN_2736 PF07670 Nucleoside recognition SMN_2737 PF04023 FeoA domain SMN_2739 PF07715 TonB-dependent Receptor Plug Domain SMN_2739 PF00593 TonB dependent receptor SMN_2744 PF02472 Biopolymer transport protein ExbD/TolR SMN_2745 PF01618 MotA/TolQ/ExbB proton channel family SMN_2749 PF00005 ABC transporter SMN_2750 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2751 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2752 PF13419 Haloacid dehalogenase-like hydrolase SMN_2753 PF03824 High-affinity nickel-transport protein SMN_2754 PF03824 High-affinity nickel-transport protein SMN_2756 PF00258 Flavodoxin SMN_2758 PF01810 LysE type translocator SMN_2759 PF08338 Domain of unknown function (DUF1731) SMN_2759 PF01370 NAD dependent epimerase/dehydratase family SMN_2762 PF00005 ABC transporter SMN_2765 PF01810 LysE type translocator SMN_2767 PF00892 EamA-like transporter family SMN_2768 PF00072 Response regulator receiver domain SMN_2768 PF00486 Transcriptional regulatory protein, C terminal SMN_2769 PF00512 His Kinase A (phospho-acceptor) domain SMN_2769 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2769 PF08521 Two-component sensor kinase N-terminal SMN_2770 PF00884 Sulfatase SMN_2770 PF08019 Phosphoethanolamine transferase EptA/EptB SMN_2772 PF12792 CSS motif domain associated with EAL SMN_2772 PF00563 EAL domain SMN_2773 PF08447 PAS fold SMN_2773 PF00512 His Kinase A (phospho-acceptor) domain SMN_2773 PF00989 PAS fold SMN_2773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2774 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2774 PF00512 His Kinase A (phospho-acceptor) domain SMN_2774 PF02743 Cache domain SMN_2775 PF00486 Transcriptional regulatory protein, C terminal SMN_2775 PF00072 Response regulator receiver domain SMN_2776 PF00672 HAMP domain SMN_2776 PF02743 Cache domain SMN_2776 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2779 PF02001 Protein of unknown function DUF134 SMN_2780 PF02673 Bacitracin resistance protein BacA SMN_2781 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SMN_2782 PF01869 BadF/BadG/BcrA/BcrD ATPase family SMN_2786 PF00206 Lyase SMN_2786 PF10415 Fumarase C C-terminus SMN_2787 PF10415 Fumarase C C-terminus SMN_2787 PF00206 Lyase SMN_2788 PF03605 Anaerobic c4-dicarboxylate membrane transporter SMN_2789 PF17763 Glutaminase/Asparaginase C-terminal domain SMN_2789 PF00710 Asparaginase, N-terminal SMN_2790 PF00512 His Kinase A (phospho-acceptor) domain SMN_2790 PF00989 PAS fold SMN_2790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2791 PF00486 Transcriptional regulatory protein, C terminal SMN_2791 PF00072 Response regulator receiver domain SMN_2794 PF03707 Bacterial signalling protein N terminal repeat SMN_2794 PF00990 Diguanylate cyclase, GGDEF domain SMN_2794 PF00563 EAL domain SMN_2795 PF02661 Fic/DOC family SMN_2795 PF13784 Fic/DOC family N-terminal SMN_2797 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SMN_2797 PF18766 SWI2/SNF2 ATPase SMN_2797 PF12008 Type I restriction and modification enzyme - subunit R C terminal SMN_2799 PF03471 Transporter associated domain SMN_2799 PF00999 Sodium/hydrogen exchanger family SMN_2799 PF02080 TrkA-C domain SMN_2805 PF05573 NosL SMN_2807 PF01578 Cytochrome C assembly protein SMN_2807 PF05140 ResB-like family SMN_2808 PF03916 Polysulphide reductase, NrfD SMN_2809 PF13247 4Fe-4S dicluster domain SMN_2809 PF00037 4Fe-4S binding domain SMN_2810 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMN_2810 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SMN_2812 PF00989 PAS fold SMN_2812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2812 PF00512 His Kinase A (phospho-acceptor) domain SMN_2813 PF00672 HAMP domain SMN_2813 PF02743 Cache domain SMN_2813 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2818 PF11798 IMS family HHH motif SMN_2818 PF11799 impB/mucB/samB family C-terminal domain SMN_2818 PF00817 impB/mucB/samB family SMN_2819 PF09335 SNARE associated Golgi protein SMN_2821 PF07715 TonB-dependent Receptor Plug Domain SMN_2821 PF00593 TonB dependent receptor SMN_2823 PF02472 Biopolymer transport protein ExbD/TolR SMN_2824 PF01618 MotA/TolQ/ExbB proton channel family SMN_2825 PF00586 AIR synthase related protein, N-terminal domain SMN_2825 PF02769 AIR synthase related protein, C-terminal domain SMN_2826 PF01206 Sulfurtransferase TusA SMN_2828 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMN_2829 PF08447 PAS fold SMN_2829 PF05231 MASE1 SMN_2829 PF08448 PAS fold SMN_2829 PF13426 PAS domain SMN_2829 PF00990 Diguanylate cyclase, GGDEF domain SMN_2829 PF00563 EAL domain SMN_2832 PF00005 ABC transporter SMN_2833 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2834 PF12849 PBP superfamily domain SMN_2835 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2836 PF00005 ABC transporter SMN_2836 PF08402 TOBE domain SMN_2839 PF02634 FdhD/NarQ family SMN_2841 PF13247 4Fe-4S dicluster domain SMN_2850 PF02472 Biopolymer transport protein ExbD/TolR SMN_2851 PF01618 MotA/TolQ/ExbB proton channel family SMN_2852 PF03459 TOBE domain SMN_2852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMN_2857 PF13649 Methyltransferase domain SMN_2858 PF03459 TOBE domain SMN_2859 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMN_2861 PF12833 Helix-turn-helix domain SMN_2861 PF02311 AraC-like ligand binding domain SMN_2864 PF12833 Helix-turn-helix domain SMN_2864 PF02311 AraC-like ligand binding domain SMN_2866 PF13247 4Fe-4S dicluster domain SMN_2872 PF00989 PAS fold SMN_2872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2872 PF00512 His Kinase A (phospho-acceptor) domain SMN_2873 PF00072 Response regulator receiver domain SMN_2873 PF00486 Transcriptional regulatory protein, C terminal SMN_2874 PF03841 L-seryl-tRNA selenium transferase SMN_2875 PF09105 Elongation factor SelB, winged helix SMN_2875 PF00009 Elongation factor Tu GTP binding domain SMN_2875 PF09107 Elongation factor SelB, winged helix SMN_2875 PF03144 Elongation factor Tu domain 2 SMN_2875 PF09106 Elongation factor SelB, winged helix SMN_2878 PF04264 YceI-like domain SMN_2879 PF17954 Quercetinase C-terminal cupin domain SMN_2879 PF02678 Pirin SMN_2886 PF00072 Response regulator receiver domain SMN_2886 PF00486 Transcriptional regulatory protein, C terminal SMN_2887 PF00512 His Kinase A (phospho-acceptor) domain SMN_2887 PF00672 HAMP domain SMN_2887 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2888 PF01965 DJ-1/PfpI family SMN_2894 PF00221 Aromatic amino acid lyase SMN_2899 PF16177 Acetyl-coenzyme A synthetase N-terminus SMN_2899 PF13193 AMP-binding enzyme C-terminal domain SMN_2899 PF00501 AMP-binding enzyme SMN_2902 PF02801 Beta-ketoacyl synthase, C-terminal domain SMN_2902 PF00109 Beta-ketoacyl synthase, N-terminal domain SMN_2903 PF00550 Phosphopantetheine attachment site SMN_2904 PF00270 DEAD/DEAH box helicase SMN_2904 PF00271 Helicase conserved C-terminal domain SMN_2910 PF01841 Transglutaminase-like superfamily SMN_2912 PF02086 D12 class N6 adenine-specific DNA methyltransferase SMN_2913 PF00072 Response regulator receiver domain SMN_2914 PF01425 Amidase SMN_2915 PF01425 Amidase SMN_2916 PF02785 Biotin carboxylase C-terminal domain SMN_2916 PF00289 Biotin carboxylase, N-terminal domain SMN_2916 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMN_2918 PF09347 Domain of unknown function (DUF1989) SMN_2919 PF00005 ABC transporter SMN_2919 PF08402 TOBE domain SMN_2920 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2922 PF00512 His Kinase A (phospho-acceptor) domain SMN_2922 PF00989 PAS fold SMN_2923 PF00072 Response regulator receiver domain SMN_2923 PF00486 Transcriptional regulatory protein, C terminal SMN_2925 PF13419 Haloacid dehalogenase-like hydrolase SMN_2926 PF00266 Aminotransferase class-V SMN_2929 PF00005 ABC transporter SMN_2930 PF00528 Binding-protein-dependent transport system inner membrane component SMN_2931 PF00486 Transcriptional regulatory protein, C terminal SMN_2931 PF00072 Response regulator receiver domain SMN_2932 PF00512 His Kinase A (phospho-acceptor) domain SMN_2932 PF02702 Osmosensitive K+ channel His kinase sensor domain SMN_2932 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2932 PF13493 Domain of unknown function (DUF4118) SMN_2933 PF02669 K+-transporting ATPase, c chain SMN_2935 PF03814 Potassium-transporting ATPase A subunit SMN_2936 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMN_2936 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMN_2939 PF00512 His Kinase A (phospho-acceptor) domain SMN_2939 PF00989 PAS fold SMN_2939 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_2940 PF02954 Bacterial regulatory protein, Fis family SMN_2940 PF00158 Sigma-54 interaction domain SMN_2940 PF00072 Response regulator receiver domain SMN_2941 PF07670 Nucleoside recognition SMN_2942 PF07670 Nucleoside recognition SMN_2943 PF07687 Peptidase dimerisation domain SMN_2943 PF01546 Peptidase family M20/M25/M40 SMN_2944 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMN_2945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_2945 PF00672 HAMP domain SMN_2946 PF00106 short chain dehydrogenase SMN_2948 PF03435 Saccharopine dehydrogenase NADP binding domain SMN_2948 PF16653 Saccharopine dehydrogenase C-terminal domain SMN_2949 PF01725 Ham1 family SMN_2950 PF06725 3D domain SMN_2950 PF03562 MltA specific insert domain SMN_2952 PF07690 Major Facilitator Superfamily SMN_2953 PF09335 SNARE associated Golgi protein SMN_2957 PF00994 Probable molybdopterin binding domain SMN_2957 PF03454 MoeA C-terminal region (domain IV) SMN_2957 PF03453 MoeA N-terminal region (domain I and II) SMN_2958 PF02391 MoaE protein SMN_2960 PF01592 NifU-like N terminal domain SMN_2960 PF04324 BFD-like [2Fe-2S] binding domain SMN_2960 PF01106 NifU-like domain SMN_2961 PF00266 Aminotransferase class-V SMN_2962 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMN_2962 PF18269 T3SS EscN ATPase C-terminal domain SMN_2963 PF01227 GTP cyclohydrolase I SMN_2964 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMN_2964 PF05698 Bacterial trigger factor protein (TF) C-terminus SMN_2964 PF05697 Bacterial trigger factor protein (TF) SMN_2965 PF00574 Clp protease SMN_2967 PF01327 Polypeptide deformylase SMN_2968 PF01078 Magnesium chelatase, subunit ChlI SMN_2968 PF13335 Magnesium chelatase, subunit ChlI C-terminal SMN_2969 PF03853 YjeF-related protein N-terminus SMN_2969 PF01256 Carbohydrate kinase SMN_2970 PF00551 Formyl transferase SMN_2971 PF05690 Thiazole biosynthesis protein ThiG SMN_2977 PF02796 Helix-turn-helix domain of resolvase SMN_2977 PF00665 Integrase core domain SMN_2979 PF02796 Helix-turn-helix domain of resolvase SMN_2979 PF00665 Integrase core domain SMN_2981 PF01012 Electron transfer flavoprotein domain SMN_2981 PF00766 Electron transfer flavoprotein FAD-binding domain SMN_2982 PF00890 FAD binding domain SMN_2982 PF03358 NADPH-dependent FMN reductase SMN_2982 PF04205 FMN-binding domain SMN_2983 PF01494 FAD binding domain SMN_2992 PF02613 Nitrate reductase delta subunit SMN_2994 PF13247 4Fe-4S dicluster domain SMN_2994 PF00037 4Fe-4S binding domain SMN_2995 PF00384 Molybdopterin oxidoreductase SMN_2995 PF01568 Molydopterin dinucleotide binding domain SMN_2995 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_2999 PF00486 Transcriptional regulatory protein, C terminal SMN_2999 PF00072 Response regulator receiver domain SMN_3000 PF00512 His Kinase A (phospho-acceptor) domain SMN_3000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_3000 PF00672 HAMP domain SMN_3001 PF00171 Aldehyde dehydrogenase family SMN_3004 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMN_3004 PF01842 ACT domain SMN_3004 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMN_3007 PF17674 HHH domain SMN_3007 PF09371 Tex-like protein N-terminal domain SMN_3007 PF16921 Tex protein YqgF-like domain SMN_3007 PF00575 S1 RNA binding domain SMN_3009 PF01739 CheR methyltransferase, SAM binding domain SMN_3009 PF01339 CheB methylesterase SMN_3009 PF08448 PAS fold SMN_3009 PF03705 CheR methyltransferase, all-alpha domain SMN_3013 PF00672 HAMP domain SMN_3013 PF16591 Helical bimodular sensor domain SMN_3013 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_3014 PF00881 Nitroreductase family SMN_3021 PF02687 FtsX-like permease family SMN_3022 PF00005 ABC transporter SMN_3026 PF01915 Glycosyl hydrolase family 3 C-terminal domain SMN_3026 PF00933 Glycosyl hydrolase family 3 N terminal domain SMN_3027 PF00375 Sodium:dicarboxylate symporter family SMN_3028 PF00999 Sodium/hydrogen exchanger family SMN_3029 PF01810 LysE type translocator SMN_3032 PF13673 Acetyltransferase (GNAT) domain SMN_3033 PF03358 NADPH-dependent FMN reductase SMN_3037 PF00873 AcrB/AcrD/AcrF family SMN_3038 PF00529 HlyD membrane-fusion protein of T1SS SMN_3038 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMN_3042 PF00072 Response regulator receiver domain SMN_3042 PF00486 Transcriptional regulatory protein, C terminal SMN_3044 PF00005 ABC transporter SMN_3044 PF08402 TOBE domain SMN_3045 PF00528 Binding-protein-dependent transport system inner membrane component SMN_3046 PF13416 Bacterial extracellular solute-binding protein SMN_3047 PF00080 Copper/zinc superoxide dismutase (SODC) SMN_3049 PF01507 Phosphoadenosine phosphosulfate reductase family SMN_3050 PF01507 Phosphoadenosine phosphosulfate reductase family SMN_3051 PF00009 Elongation factor Tu GTP binding domain SMN_3053 PF00899 ThiF family SMN_3055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SMN_3055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SMN_3056 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMN_3056 PF14824 Sirohaem biosynthesis protein central SMN_3056 PF10414 Sirohaem synthase dimerisation region SMN_3057 PF01053 Cys/Met metabolism PLP-dependent enzyme SMN_3063 PF00072 Response regulator receiver domain SMN_3063 PF00486 Transcriptional regulatory protein, C terminal SMN_3064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_3064 PF00512 His Kinase A (phospho-acceptor) domain SMN_3064 PF00672 HAMP domain SMN_3066 PF00990 Diguanylate cyclase, GGDEF domain SMN_3069 PF00486 Transcriptional regulatory protein, C terminal SMN_3069 PF00072 Response regulator receiver domain SMN_3073 PF01545 Cation efflux family SMN_3073 PF16916 Dimerisation domain of Zinc Transporter SMN_3077 PF02683 Cytochrome C biogenesis protein transmembrane region SMN_3077 PF11412 Disulphide bond corrector protein DsbC SMN_3078 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMN_3079 PF02040 Arsenical pump membrane protein SMN_3080 PF01451 Low molecular weight phosphotyrosine protein phosphatase SMN_3081 PF00355 Rieske [2Fe-2S] domain SMN_3082 PF01568 Molydopterin dinucleotide binding domain SMN_3082 PF00384 Molybdopterin oxidoreductase SMN_3082 PF18465 Rieske 3Fe-4S SMN_3085 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMN_3087 PF00005 ABC transporter SMN_3087 PF17850 CysA C-terminal regulatory domain SMN_3087 PF12857 TOBE-like domain SMN_3088 PF00528 Binding-protein-dependent transport system inner membrane component SMN_3091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMN_3091 PF03459 TOBE domain SMN_3094 PF00005 ABC transporter SMN_3094 PF12704 MacB-like periplasmic core domain SMN_3094 PF02687 FtsX-like permease family SMN_3097 PF02086 D12 class N6 adenine-specific DNA methyltransferase SMN_3103 PF00005 ABC transporter SMN_3104 PF00072 Response regulator receiver domain SMN_3104 PF00158 Sigma-54 interaction domain SMN_3104 PF02954 Bacterial regulatory protein, Fis family SMN_3105 PF08448 PAS fold SMN_3105 PF00072 Response regulator receiver domain SMN_3105 PF00512 His Kinase A (phospho-acceptor) domain SMN_3105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMN_3105 PF13426 PAS domain SMN_3108 PF00384 Molybdopterin oxidoreductase SMN_3108 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_3108 PF01568 Molydopterin dinucleotide binding domain SMN_3109 PF13247 4Fe-4S dicluster domain SMN_3110 PF12849 PBP superfamily domain SMN_3111 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMN_3111 PF08447 PAS fold SMN_3113 PF03741 Integral membrane protein TerC family SMN_3114 PF02621 Menaquinone biosynthesis SMN_3115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SMN_3115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SMN_3116 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SMN_3117 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SMN_3118 PF13520 Amino acid permease SMN_3120 PF01515 Phosphate acetyl/butaryl transferase SMN_3120 PF00390 Malic enzyme, N-terminal domain SMN_3120 PF03949 Malic enzyme, NAD binding domain SMN_3121 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMN_3123 PF00289 Biotin carboxylase, N-terminal domain SMN_3123 PF02785 Biotin carboxylase C-terminal domain SMN_3123 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMN_3124 PF00364 Biotin-requiring enzyme SMN_3125 PF00692 dUTPase SMN_3128 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SMN_3130 PF10672 S-adenosylmethionine-dependent methyltransferase SMN_3130 PF17785 PUA-like domain SMN_3133 PF00700 Bacterial flagellin C-terminal helical region SMN_3133 PF07196 Flagellin hook IN motif SMN_3133 PF00669 Bacterial flagellin N-terminal helical region SMN_3134 PF02719 Polysaccharide biosynthesis protein SMN_3135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMN_3136 PF02348 Cytidylyltransferase SMN_3138 PF03102 NeuB family SMN_3138 PF08666 SAF domain SMN_3142 PF00501 AMP-binding enzyme SMN_3142 PF13193 AMP-binding enzyme C-terminal domain SMN_3143 PF00535 Glycosyl transferase family 2 SMN_3144 PF03275 UDP-galactopyranose mutase SMN_3146 PF00535 Glycosyl transferase family 2 SMN_3147 PF00535 Glycosyl transferase family 2 SMN_3148 PF00132 Bacterial transferase hexapeptide (six repeats) SMN_3150 PF08241 Methyltransferase domain SMN_3152 PF18216 N-formyltransferase dimerization C-terminal domain SMN_3152 PF00551 Formyl transferase SMN_3153 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMN_3156 PF00700 Bacterial flagellin C-terminal helical region SMN_3156 PF07196 Flagellin hook IN motif SMN_3156 PF00669 Bacterial flagellin N-terminal helical region SMN_3157 PF01131 DNA topoisomerase SMN_3157 PF01396 Topoisomerase DNA binding C4 zinc finger SMN_3157 PF01751 Toprim domain SMN_3158 PF04055 Radical SAM superfamily SMN_3158 PF06968 Biotin and Thiamin Synthesis associated domain SMN_3159 PF00285 Citrate synthase, C-terminal domain SMN_3162 PF00113 Enolase, C-terminal TIM barrel domain SMN_3162 PF03952 Enolase, N-terminal domain SMN_3163 PF00154 recA bacterial DNA recombination protein SMN_3164 PF02621 Menaquinone biosynthesis SMN_3165 PF01313 Bacterial export proteins, family 3 SMN_3166 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SMN_3167 PF00814 Glycoprotease family SMN_3169 PF03707 Bacterial signalling protein N terminal repeat SMN_3169 PF00990 Diguanylate cyclase, GGDEF domain SMN_3169 PF00563 EAL domain SMN_3174 PF00149 Calcineurin-like phosphoesterase SMN_3175 PF01235 Sodium:alanine symporter family SMN_3176 PF00860 Permease family SMN_3177 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SMN_3177 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SMN_3177 PF13288 DXP reductoisomerase C-terminal domain SMN_3181 PF02595 Glycerate kinase family SMN_3182 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMN_3182 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMN_3186 PF06628 Catalase-related immune-responsive SMN_3186 PF00199 Catalase SMN_3187 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMN_3187 PF00578 AhpC/TSA family SMN_3188 PF00027 Cyclic nucleotide-binding domain SMN_3188 PF13545 Crp-like helix-turn-helix domain SMN_3190 PF00330 Aconitase family (aconitate hydratase) SMN_3191 PF12804 MobA-like NTP transferase domain SMN_3197 PF02253 Phospholipase A1 SMN_3198 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SMN_3199 PF01967 MoaC family SMN_3202 PF00872 Transposase, Mutator family SMN_3209 PF00872 Transposase, Mutator family SMN_3216 PF13247 4Fe-4S dicluster domain SMN_3217 PF00384 Molybdopterin oxidoreductase SMN_3217 PF01568 Molydopterin dinucleotide binding domain SMN_3218 PF00581 Rhodanese-like domain SMN_3220 PF10609 NUBPL iron-transfer P-loop NTPase SMN_3234 PF01027 Inhibitor of apoptosis-promoting Bax1 SMN_3237 PF13247 4Fe-4S dicluster domain SMN_3238 PF01568 Molydopterin dinucleotide binding domain SMN_3238 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_3238 PF00384 Molybdopterin oxidoreductase SMN_3240 PF03466 LysR substrate binding domain SMN_3240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMN_3244 PF00037 4Fe-4S binding domain SMN_3244 PF13247 4Fe-4S dicluster domain SMN_3245 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMN_3245 PF01568 Molydopterin dinucleotide binding domain SMN_3245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMN_3245 PF00384 Molybdopterin oxidoreductase SMN_3246 PF13847 Methyltransferase domain SMN_3247 PF00211 Adenylate and Guanylate cyclase catalytic domain SMN_3248 PF01966 HD domain SMN_3249 PF03840 Preprotein translocase SecG subunit SMN_3251 PF01765 Ribosome recycling factor SMN_3252 PF00156 Phosphoribosyl transferase domain SMN_3257 PF04011 LemA family SMN_3261 PF00460 Flagella basal body rod protein SMN_3261 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMN_3261 PF07196 Flagellin hook IN motif SMN_3261 PF07559 Flagellar basal body protein FlaE SMN_3262 PF07559 Flagellar basal body protein FlaE SMN_3262 PF07196 Flagellin hook IN motif SMN_3262 PF00460 Flagella basal body rod protein SMN_3262 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMN_3263 PF02511 Thymidylate synthase complementing protein SMN_3264 PF02075 Crossover junction endodeoxyribonuclease RuvC