locus-tag class description SJPD1_0001 PF00308 Bacterial dnaA protein SJPD1_0001 PF08299 Bacterial dnaA protein helix-turn-helix SJPD1_0001 PF11638 DnaA N-terminal domain SJPD1_0002 PF02767 DNA polymerase III beta subunit, central domain SJPD1_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain SJPD1_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain SJPD1_0003 PF01751 Toprim domain SJPD1_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0003 PF00204 DNA gyrase B SJPD1_0003 PF00986 DNA gyrase B subunit, carboxyl terminus SJPD1_0004 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0004 PF00563 EAL domain SJPD1_0005 PF14489 QueF-like protein SJPD1_0007 PF03167 Uracil DNA glycosylase superfamily SJPD1_0008 PF00633 Helix-hairpin-helix motif SJPD1_0008 PF00730 HhH-GPD superfamily base excision DNA repair protein SJPD1_0008 PF14815 NUDIX domain SJPD1_0009 PF07690 Major Facilitator Superfamily SJPD1_0010 PF00939 Sodium:sulfate symporter transmembrane region SJPD1_0011 PF05681 Fumarate hydratase (Fumerase) SJPD1_0012 PF05683 Fumarase C-terminus SJPD1_0014 PF00330 Aconitase family (aconitate hydratase) SJPD1_0015 PF00694 Aconitase C-terminal domain SJPD1_0019 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0021 PF02080 TrkA-C domain SJPD1_0021 PF06826 Predicted Permease Membrane Region SJPD1_0023 PF00857 Isochorismatase family SJPD1_0024 PF00440 Bacterial regulatory proteins, tetR family SJPD1_0024 PF16925 Tetracyclin repressor-like, C-terminal domain SJPD1_0027 PF12833 Helix-turn-helix domain SJPD1_0027 PF06445 GyrI-like small molecule binding domain SJPD1_0028 PF08241 Methyltransferase domain SJPD1_0029 PF01875 Memo-like protein SJPD1_0031 PF01871 AMMECR1 SJPD1_0036 PF12833 Helix-turn-helix domain SJPD1_0038 PF05728 Uncharacterised protein family (UPF0227) SJPD1_0040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0040 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SJPD1_0040 PF00384 Molybdopterin oxidoreductase SJPD1_0040 PF01568 Molydopterin dinucleotide binding domain SJPD1_0040 PF12838 4Fe-4S dicluster domain SJPD1_0042 PF02899 Phage integrase, N-terminal SAM-like domain SJPD1_0042 PF00589 Phage integrase family SJPD1_0048 PF00145 C-5 cytosine-specific DNA methylase SJPD1_0050 PF02661 Fic/DOC family SJPD1_0050 PF17841 BID domain of Bartonella effector protein (Bep) SJPD1_0052 PF01381 Helix-turn-helix SJPD1_0065 PF08751 TrwC relaxase SJPD1_0065 PF18340 DNA relaxase TraI 2B/2B-like domain SJPD1_0065 PF07057 DNA helicase TraI SJPD1_0065 PF18272 single-stranded DNA binding TraI N-terminal subdomain SJPD1_0074 PF00920 Dehydratase family SJPD1_0075 PF01914 MarC family integral membrane protein SJPD1_0077 PF00483 Nucleotidyl transferase SJPD1_0078 PF06418 CTP synthase N-terminus SJPD1_0078 PF00117 Glutamine amidotransferase class-I SJPD1_0079 PF02272 DHHA1 domain SJPD1_0079 PF17768 RecJ OB domain SJPD1_0079 PF01368 DHH family SJPD1_0081 PF00795 Carbon-nitrogen hydrolase SJPD1_0082 PF00268 Ribonucleotide reductase, small chain SJPD1_0085 PF13597 Anaerobic ribonucleoside-triphosphate reductase SJPD1_0085 PF03477 ATP cone domain SJPD1_0086 PF01177 Asp/Glu/Hydantoin racemase SJPD1_0087 PF03477 ATP cone domain SJPD1_0087 PF02867 Ribonucleotide reductase, barrel domain SJPD1_0087 PF00317 Ribonucleotide reductase, all-alpha domain SJPD1_0088 PF10397 Adenylosuccinate lyase C-terminus SJPD1_0088 PF00206 Lyase SJPD1_0089 PF00849 RNA pseudouridylate synthase SJPD1_0090 PF01557 Fumarylacetoacetate (FAA) hydrolase family SJPD1_0092 PF04055 Radical SAM superfamily SJPD1_0094 PF00977 Histidine biosynthesis protein SJPD1_0095 PF00398 Ribosomal RNA adenine dimethylase SJPD1_0096 PF17770 Ribonuclease J C-terminal domain SJPD1_0096 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SJPD1_0096 PF00753 Metallo-beta-lactamase superfamily SJPD1_0097 PF01380 SIS domain SJPD1_0097 PF00571 CBS domain SJPD1_0098 PF00849 RNA pseudouridylate synthase SJPD1_0098 PF01479 S4 domain SJPD1_0099 PF12002 MgsA AAA+ ATPase C terminal SJPD1_0099 PF16193 AAA C-terminal domain SJPD1_0099 PF01661 Macro domain SJPD1_0099 PF05496 Holliday junction DNA helicase RuvB P-loop domain SJPD1_0101 PF01312 FlhB HrpN YscU SpaS Family SJPD1_0104 PF02769 AIR synthase related protein, C-terminal domain SJPD1_0104 PF00586 AIR synthase related protein, N-terminal domain SJPD1_0105 PF01121 Dephospho-CoA kinase SJPD1_0106 PF01678 Diaminopimelate epimerase SJPD1_0108 PF03462 PCRF domain SJPD1_0108 PF00472 RF-1 domain SJPD1_0109 PF01649 Ribosomal protein S20 SJPD1_0110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SJPD1_0110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SJPD1_0110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SJPD1_0110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SJPD1_0111 PF01252 Signal peptidase (SPase) II SJPD1_0113 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SJPD1_0113 PF03129 Anticodon binding domain SJPD1_0113 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SJPD1_0114 PF00707 Translation initiation factor IF-3, C-terminal domain SJPD1_0114 PF05198 Translation initiation factor IF-3, N-terminal domain SJPD1_0115 PF01632 Ribosomal protein L35 SJPD1_0116 PF00453 Ribosomal protein L20 SJPD1_0117 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SJPD1_0117 PF13746 4Fe-4S dicluster domain SJPD1_0117 PF12801 4Fe-4S binding domain SJPD1_0119 PF01165 Ribosomal protein S21 SJPD1_0122 PF03738 Glutathionylspermidine synthase preATP-grasp SJPD1_0123 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SJPD1_0123 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SJPD1_0124 PF04461 Protein of unknown function (DUF520) SJPD1_0126 PF08019 Phosphoethanolamine transferase EptA/EptB SJPD1_0126 PF00884 Sulfatase SJPD1_0132 PF13426 PAS domain SJPD1_0132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0132 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0132 PF00672 HAMP domain SJPD1_0133 PF00072 Response regulator receiver domain SJPD1_0133 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0137 PF00005 ABC transporter SJPD1_0138 PF02405 Permease MlaE SJPD1_0139 PF01625 Peptide methionine sulfoxide reductase SJPD1_0141 PF01914 MarC family integral membrane protein SJPD1_0142 PF00672 HAMP domain SJPD1_0142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0142 PF17200 Single Cache domain 2 SJPD1_0144 PF11849 Domain of unknown function (DUF3369) SJPD1_0148 PF00989 PAS fold SJPD1_0148 PF13426 PAS domain SJPD1_0148 PF13188 PAS domain SJPD1_0148 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0149 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0149 PF00072 Response regulator receiver domain SJPD1_0150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SJPD1_0151 PF00543 Nitrogen regulatory protein P-II SJPD1_0152 PF00909 Ammonium Transporter Family SJPD1_0153 PF00248 Aldo/keto reductase family SJPD1_0155 PF00072 Response regulator receiver domain SJPD1_0155 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0158 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_0159 PF00497 Bacterial extracellular solute-binding proteins, family 3 SJPD1_0160 PF00005 ABC transporter SJPD1_0166 PF01261 Xylose isomerase-like TIM barrel SJPD1_0168 PF13193 AMP-binding enzyme C-terminal domain SJPD1_0168 PF00501 AMP-binding enzyme SJPD1_0169 PF01434 Peptidase family M41 SJPD1_0169 PF06480 FtsH Extracellular SJPD1_0169 PF17862 AAA+ lid domain SJPD1_0169 PF00004 ATPase family associated with various cellular activities (AAA) SJPD1_0170 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SJPD1_0171 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_0172 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SJPD1_0173 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SJPD1_0176 PF13237 4Fe-4S dicluster domain SJPD1_0176 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0176 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SJPD1_0176 PF00384 Molybdopterin oxidoreductase SJPD1_0176 PF01568 Molydopterin dinucleotide binding domain SJPD1_0177 PF00146 NADH dehydrogenase SJPD1_0178 PF12838 4Fe-4S dicluster domain SJPD1_0179 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SJPD1_0180 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SJPD1_0181 PF00361 Proton-conducting membrane transporter SJPD1_0181 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SJPD1_0182 PF00361 Proton-conducting membrane transporter SJPD1_0183 PF00361 Proton-conducting membrane transporter SJPD1_0185 PF00171 Aldehyde dehydrogenase family SJPD1_0190 PF00672 HAMP domain SJPD1_0190 PF16591 Helical bimodular sensor domain SJPD1_0190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0192 PF06463 Molybdenum Cofactor Synthesis C SJPD1_0192 PF04055 Radical SAM superfamily SJPD1_0193 PF00994 Probable molybdopterin binding domain SJPD1_0193 PF03454 MoeA C-terminal region (domain IV) SJPD1_0193 PF03453 MoeA N-terminal region (domain I and II) SJPD1_0195 PF04452 RNA methyltransferase SJPD1_0196 PF01197 Ribosomal protein L31 SJPD1_0197 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SJPD1_0198 PF08032 RNA 2'-O ribose methyltransferase substrate binding SJPD1_0198 PF00588 SpoU rRNA Methylase family SJPD1_0201 PF00155 Aminotransferase class I and II SJPD1_0202 PF03447 Homoserine dehydrogenase, NAD binding domain SJPD1_0202 PF00742 Homoserine dehydrogenase SJPD1_0202 PF01842 ACT domain SJPD1_0203 PF02021 Uncharacterised protein family UPF0102 SJPD1_0204 PF00085 Thioredoxin SJPD1_0205 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_0206 PF01113 Dihydrodipicolinate reductase, N-terminus SJPD1_0206 PF05173 Dihydrodipicolinate reductase, C-terminus SJPD1_0207 PF00156 Phosphoribosyl transferase domain SJPD1_0208 PF16199 Radical_SAM C-terminal domain SJPD1_0208 PF04055 Radical SAM superfamily SJPD1_0211 PF01502 Phosphoribosyl-AMP cyclohydrolase SJPD1_0211 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SJPD1_0213 PF01063 Amino-transferase class IV SJPD1_0214 PF00171 Aldehyde dehydrogenase family SJPD1_0215 PF00578 AhpC/TSA family SJPD1_0217 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0217 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0217 PF00672 HAMP domain SJPD1_0218 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0218 PF00072 Response regulator receiver domain SJPD1_0220 PF02677 Epoxyqueuosine reductase QueH SJPD1_0221 PF07977 FabA-like domain SJPD1_0222 PF00132 Bacterial transferase hexapeptide (six repeats) SJPD1_0222 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SJPD1_0223 PF06689 ClpX C4-type zinc finger SJPD1_0223 PF10431 C-terminal, D2-small domain, of ClpB protein SJPD1_0223 PF07724 AAA domain (Cdc48 subfamily) SJPD1_0226 PF02142 MGS-like domain SJPD1_0226 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SJPD1_0226 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SJPD1_0230 PF00899 ThiF family SJPD1_0231 PF01975 Survival protein SurE SJPD1_0232 PF02684 Lipid-A-disaccharide synthetase SJPD1_0233 PF01272 Transcription elongation factor, GreA/GreB, C-term SJPD1_0233 PF03449 Transcription elongation factor, N-terminal SJPD1_0234 PF02774 Semialdehyde dehydrogenase, dimerisation domain SJPD1_0234 PF01118 Semialdehyde dehydrogenase, NAD binding domain SJPD1_0236 PF01584 CheW-like domain SJPD1_0236 PF00072 Response regulator receiver domain SJPD1_0237 PF02895 Signal transducing histidine kinase, homodimeric domain SJPD1_0237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0237 PF01584 CheW-like domain SJPD1_0237 PF01627 Hpt domain SJPD1_0237 PF07194 P2 response regulator binding domain SJPD1_0239 PF01584 CheW-like domain SJPD1_0243 PF00923 Transaldolase/Fructose-6-phosphate aldolase SJPD1_0244 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_0244 PF13359 DDE superfamily endonuclease SJPD1_0245 PF13359 DDE superfamily endonuclease SJPD1_0245 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_0246 PF00923 Transaldolase/Fructose-6-phosphate aldolase SJPD1_0247 PF00437 Type II/IV secretion system protein SJPD1_0248 PF14693 Ribosomal protein TL5, C-terminal domain SJPD1_0248 PF01386 Ribosomal L25p family SJPD1_0249 PF01195 Peptidyl-tRNA hydrolase SJPD1_0251 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SJPD1_0251 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SJPD1_0252 PF01817 Chorismate mutase type II SJPD1_0252 PF01842 ACT domain SJPD1_0252 PF00800 Prephenate dehydratase SJPD1_0253 PF00155 Aminotransferase class I and II SJPD1_0254 PF01514 Secretory protein of YscJ/FliF family SJPD1_0254 PF08345 Flagellar M-ring protein C-terminal SJPD1_0255 PF14841 FliG middle domain SJPD1_0255 PF01706 FliG C-terminal domain SJPD1_0255 PF14842 FliG N-terminal domain SJPD1_0257 PF02779 Transketolase, pyrimidine binding domain SJPD1_0257 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SJPD1_0257 PF02780 Transketolase, C-terminal domain SJPD1_0258 PF01475 Ferric uptake regulator family SJPD1_0259 PF10417 C-terminal domain of 1-Cys peroxiredoxin SJPD1_0259 PF00578 AhpC/TSA family SJPD1_0261 PF00037 4Fe-4S binding domain SJPD1_0262 PF00334 Nucleoside diphosphate kinase SJPD1_0264 PF01783 Ribosomal L32p protein family SJPD1_0265 PF02504 Fatty acid synthesis protein SJPD1_0266 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SJPD1_0266 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SJPD1_0267 PF17863 AAA lid domain SJPD1_0267 PF07726 ATPase family associated with various cellular activities (AAA) SJPD1_0271 PF07584 Aerotolerance regulator N-terminal SJPD1_0271 PF00092 von Willebrand factor type A domain SJPD1_0273 PF01842 ACT domain SJPD1_0273 PF02153 Prephenate dehydrogenase SJPD1_0274 PF07244 Surface antigen variable number repeat SJPD1_0274 PF01103 Surface antigen SJPD1_0276 PF00037 4Fe-4S binding domain SJPD1_0277 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0277 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0278 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0278 PF00072 Response regulator receiver domain SJPD1_0280 PF02660 Glycerol-3-phosphate acyltransferase SJPD1_0281 PF02660 Glycerol-3-phosphate acyltransferase SJPD1_0282 PF02445 Quinolinate synthetase A protein SJPD1_0283 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SJPD1_0283 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SJPD1_0284 PF01312 FlhB HrpN YscU SpaS Family SJPD1_0287 PF03775 Septum formation inhibitor MinC, C-terminal domain SJPD1_0288 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SJPD1_0290 PF08544 GHMP kinases C terminal SJPD1_0290 PF00288 GHMP kinases N terminal domain SJPD1_0291 PF00009 Elongation factor Tu GTP binding domain SJPD1_0291 PF04760 Translation initiation factor IF-2, N-terminal region SJPD1_0291 PF11987 Translation-initiation factor 2 SJPD1_0292 PF02033 Ribosome-binding factor A SJPD1_0293 PF02576 RimP N-terminal domain SJPD1_0293 PF17384 RimP C-terminal SH3 domain SJPD1_0294 PF01872 RibD C-terminal domain SJPD1_0294 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SJPD1_0297 PF08448 PAS fold SJPD1_0297 PF00563 EAL domain SJPD1_0297 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0297 PF08447 PAS fold SJPD1_0298 PF00313 'Cold-shock' DNA-binding domain SJPD1_0299 PF13426 PAS domain SJPD1_0299 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0299 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0299 PF00672 HAMP domain SJPD1_0300 PF00072 Response regulator receiver domain SJPD1_0300 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0302 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SJPD1_0304 PF16199 Radical_SAM C-terminal domain SJPD1_0304 PF04055 Radical SAM superfamily SJPD1_0305 PF00384 Molybdopterin oxidoreductase SJPD1_0305 PF01568 Molydopterin dinucleotide binding domain SJPD1_0305 PF10518 TAT (twin-arginine translocation) pathway signal sequence SJPD1_0305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0306 PF13247 4Fe-4S dicluster domain SJPD1_0307 PF03916 Polysulphide reductase, NrfD SJPD1_0308 PF08495 FIST N domain SJPD1_0308 PF10442 FIST C domain SJPD1_0308 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0308 PF00563 EAL domain SJPD1_0309 PF00384 Molybdopterin oxidoreductase SJPD1_0309 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0309 PF01568 Molydopterin dinucleotide binding domain SJPD1_0310 PF13247 4Fe-4S dicluster domain SJPD1_0311 PF03916 Polysulphide reductase, NrfD SJPD1_0312 PF00072 Response regulator receiver domain SJPD1_0312 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0313 PF00672 HAMP domain SJPD1_0313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0313 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0313 PF13426 PAS domain SJPD1_0315 PF04055 Radical SAM superfamily SJPD1_0315 PF06969 HemN C-terminal domain SJPD1_0320 PF02472 Biopolymer transport protein ExbD/TolR SJPD1_0321 PF01618 MotA/TolQ/ExbB proton channel family SJPD1_0322 PF02833 DHHA2 domain SJPD1_0322 PF01368 DHH family SJPD1_0325 PF01209 ubiE/COQ5 methyltransferase family SJPD1_0326 PF02601 Exonuclease VII, large subunit SJPD1_0326 PF13742 OB-fold nucleic acid binding domain SJPD1_0329 PF00563 EAL domain SJPD1_0329 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0329 PF03707 Bacterial signalling protein N terminal repeat SJPD1_0330 PF00962 Adenosine/AMP deaminase SJPD1_0332 PF12833 Helix-turn-helix domain SJPD1_0332 PF06719 AraC-type transcriptional regulator N-terminus SJPD1_0333 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SJPD1_0334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SJPD1_0334 PF03466 LysR substrate binding domain SJPD1_0335 PF03601 Conserved hypothetical protein 698 SJPD1_0336 PF00255 Glutathione peroxidase SJPD1_0337 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SJPD1_0337 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SJPD1_0338 PF01343 Peptidase family S49 SJPD1_0339 PF01979 Amidohydrolase family SJPD1_0340 PF01220 Dehydroquinase class II SJPD1_0341 PF00557 Metallopeptidase family M24 SJPD1_0341 PF01321 Creatinase/Prolidase N-terminal domain SJPD1_0342 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SJPD1_0343 PF00448 SRP54-type protein, GTPase domain SJPD1_0344 PF10609 NUBPL iron-transfer P-loop NTPase SJPD1_0346 PF04545 Sigma-70, region 4 SJPD1_0346 PF04542 Sigma-70 region 2 SJPD1_0346 PF04539 Sigma-70 region 3 SJPD1_0347 PF02154 Flagellar motor switch protein FliM SJPD1_0347 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SJPD1_0348 PF04509 CheC-like family SJPD1_0348 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SJPD1_0351 PF00535 Glycosyl transferase family 2 SJPD1_0352 PF08889 WbqC-like protein family SJPD1_0353 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SJPD1_0357 PF14572 Phosphoribosyl synthetase-associated domain SJPD1_0357 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SJPD1_0358 PF06421 GTP-binding protein LepA C-terminus SJPD1_0358 PF03144 Elongation factor Tu domain 2 SJPD1_0358 PF00009 Elongation factor Tu GTP binding domain SJPD1_0358 PF00679 Elongation factor G C-terminus SJPD1_0359 PF00156 Phosphoribosyl transferase domain SJPD1_0360 PF00083 Sugar (and other) transporter SJPD1_0363 PF03989 DNA gyrase C-terminal domain, beta-propeller SJPD1_0363 PF00521 DNA gyrase/topoisomerase IV, subunit A SJPD1_0366 PF00072 Response regulator receiver domain SJPD1_0366 PF00158 Sigma-54 interaction domain SJPD1_0366 PF02954 Bacterial regulatory protein, Fis family SJPD1_0367 PF02774 Semialdehyde dehydrogenase, dimerisation domain SJPD1_0367 PF01118 Semialdehyde dehydrogenase, NAD binding domain SJPD1_0369 PF01208 Uroporphyrinogen decarboxylase (URO-D) SJPD1_0370 PF04055 Radical SAM superfamily SJPD1_0372 PF16868 NMT1-like family SJPD1_0374 PF13356 Arm DNA-binding domain SJPD1_0374 PF00589 Phage integrase family SJPD1_0379 PF02661 Fic/DOC family SJPD1_0379 PF13784 Fic/DOC family N-terminal SJPD1_0381 PF10544 T5orf172 domain SJPD1_0387 PF00239 Resolvase, N terminal domain SJPD1_0387 PF02796 Helix-turn-helix domain of resolvase SJPD1_0392 PF03180 NLPA lipoprotein SJPD1_0393 PF09383 NIL domain SJPD1_0393 PF00005 ABC transporter SJPD1_0394 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_0395 PF01384 Phosphate transporter family SJPD1_0396 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SJPD1_0396 PF00056 lactate/malate dehydrogenase, NAD binding domain SJPD1_0397 PF09364 XFP N-terminal domain SJPD1_0397 PF09363 XFP C-terminal domain SJPD1_0397 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SJPD1_0400 PF06445 GyrI-like small molecule binding domain SJPD1_0400 PF12833 Helix-turn-helix domain SJPD1_0401 PF14537 Cytochrome c3 SJPD1_0401 PF00890 FAD binding domain SJPD1_0409 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0409 PF10442 FIST C domain SJPD1_0409 PF00563 EAL domain SJPD1_0409 PF08495 FIST N domain SJPD1_0412 PF00085 Thioredoxin SJPD1_0419 PF09905 DNA-binding protein VF530 SJPD1_0420 PF00106 short chain dehydrogenase SJPD1_0421 PF13458 Periplasmic binding protein SJPD1_0422 PF02653 Branched-chain amino acid transport system / permease component SJPD1_0423 PF11862 Domain of unknown function (DUF3382) SJPD1_0423 PF02653 Branched-chain amino acid transport system / permease component SJPD1_0424 PF12399 Branched-chain amino acid ATP-binding cassette transporter SJPD1_0424 PF00005 ABC transporter SJPD1_0425 PF00005 ABC transporter SJPD1_0427 PF03883 Peroxide stress protein YaaA SJPD1_0432 PF00009 Elongation factor Tu GTP binding domain SJPD1_0432 PF03143 Elongation factor Tu C-terminal domain SJPD1_0432 PF03144 Elongation factor Tu domain 2 SJPD1_0433 PF00471 Ribosomal protein L33 SJPD1_0435 PF02357 Transcription termination factor nusG SJPD1_0436 PF03946 Ribosomal protein L11, N-terminal domain SJPD1_0436 PF00298 Ribosomal protein L11, RNA binding domain SJPD1_0437 PF00687 Ribosomal protein L1p/L10e family SJPD1_0438 PF00466 Ribosomal protein L10 SJPD1_0439 PF16320 Ribosomal protein L7/L12 dimerisation domain SJPD1_0439 PF00542 Ribosomal protein L7/L12 C-terminal domain SJPD1_0440 PF04560 RNA polymerase Rpb2, domain 7 SJPD1_0440 PF04561 RNA polymerase Rpb2, domain 2 SJPD1_0440 PF04563 RNA polymerase beta subunit SJPD1_0440 PF04565 RNA polymerase Rpb2, domain 3 SJPD1_0440 PF00562 RNA polymerase Rpb2, domain 6 SJPD1_0440 PF10385 RNA polymerase beta subunit external 1 domain SJPD1_0441 PF00623 RNA polymerase Rpb1, domain 2 SJPD1_0441 PF05000 RNA polymerase Rpb1, domain 4 SJPD1_0441 PF04983 RNA polymerase Rpb1, domain 3 SJPD1_0441 PF04997 RNA polymerase Rpb1, domain 1 SJPD1_0441 PF04998 RNA polymerase Rpb1, domain 5 SJPD1_0442 PF00164 Ribosomal protein S12/S23 SJPD1_0443 PF00177 Ribosomal protein S7p/S5e SJPD1_0444 PF00009 Elongation factor Tu GTP binding domain SJPD1_0444 PF03144 Elongation factor Tu domain 2 SJPD1_0444 PF03764 Elongation factor G, domain IV SJPD1_0444 PF14492 Elongation Factor G, domain II SJPD1_0444 PF00679 Elongation factor G C-terminus SJPD1_0446 PF00892 EamA-like transporter family SJPD1_0447 PF00892 EamA-like transporter family SJPD1_0448 PF00248 Aldo/keto reductase family SJPD1_0450 PF00939 Sodium:sulfate symporter transmembrane region SJPD1_0453 PF00384 Molybdopterin oxidoreductase SJPD1_0453 PF01568 Molydopterin dinucleotide binding domain SJPD1_0453 PF18364 Molybdopterin oxidoreductase N-terminal domain SJPD1_0455 PF00072 Response regulator receiver domain SJPD1_0455 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0456 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SJPD1_0457 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0457 PF13188 PAS domain SJPD1_0457 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0457 PF08448 PAS fold SJPD1_0457 PF00072 Response regulator receiver domain SJPD1_0458 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0458 PF00672 HAMP domain SJPD1_0458 PF02743 Cache domain SJPD1_0459 PF08447 PAS fold SJPD1_0459 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0461 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SJPD1_0461 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0461 PF00384 Molybdopterin oxidoreductase SJPD1_0461 PF01568 Molydopterin dinucleotide binding domain SJPD1_0462 PF00146 NADH dehydrogenase SJPD1_0463 PF12838 4Fe-4S dicluster domain SJPD1_0464 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SJPD1_0465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SJPD1_0466 PF00361 Proton-conducting membrane transporter SJPD1_0466 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SJPD1_0467 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus SJPD1_0467 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SJPD1_0467 PF00361 Proton-conducting membrane transporter SJPD1_0468 PF00361 Proton-conducting membrane transporter SJPD1_0469 PF00361 Proton-conducting membrane transporter SJPD1_0470 PF03707 Bacterial signalling protein N terminal repeat SJPD1_0470 PF00563 EAL domain SJPD1_0470 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0474 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SJPD1_0474 PF10531 SLBB domain SJPD1_0474 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SJPD1_0476 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SJPD1_0476 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SJPD1_0477 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_0478 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SJPD1_0481 PF00842 Alanine racemase, C-terminal domain SJPD1_0481 PF01168 Alanine racemase, N-terminal domain SJPD1_0485 PF02527 rRNA small subunit methyltransferase G SJPD1_0487 PF17202 Single cache domain 3 SJPD1_0487 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0487 PF00672 HAMP domain SJPD1_0489 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SJPD1_0489 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SJPD1_0490 PF01741 Large-conductance mechanosensitive channel, MscL SJPD1_0492 PF00925 GTP cyclohydrolase II SJPD1_0493 PF00490 Delta-aminolevulinic acid dehydratase SJPD1_0494 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SJPD1_0494 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SJPD1_0495 PF10788 Protein of unknown function (DUF2603) SJPD1_0496 PF06969 HemN C-terminal domain SJPD1_0496 PF04055 Radical SAM superfamily SJPD1_0497 PF02754 Cysteine-rich domain SJPD1_0498 PF00072 Response regulator receiver domain SJPD1_0498 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0499 PF07690 Major Facilitator Superfamily SJPD1_0500 PF02810 SEC-C motif SJPD1_0503 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0503 PF08448 PAS fold SJPD1_0504 PF01790 Prolipoprotein diacylglyceryl transferase SJPD1_0505 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SJPD1_0506 PF02910 Fumarate reductase flavoprotein C-term SJPD1_0506 PF00890 FAD binding domain SJPD1_0507 PF13183 4Fe-4S dicluster domain SJPD1_0507 PF13085 2Fe-2S iron-sulfur cluster binding domain SJPD1_0508 PF00350 Dynamin family SJPD1_0509 PF00350 Dynamin family SJPD1_0511 PF01594 AI-2E family transporter SJPD1_0512 PF17864 RuvB AAA lid domain SJPD1_0512 PF05491 RuvB C-terminal winged helix domain SJPD1_0512 PF05496 Holliday junction DNA helicase RuvB P-loop domain SJPD1_0513 PF02548 Ketopantoate hydroxymethyltransferase SJPD1_0515 PF00290 Tryptophan synthase alpha chain SJPD1_0518 PF00318 Ribosomal protein S2 SJPD1_0519 PF00889 Elongation factor TS SJPD1_0520 PF00005 ABC transporter SJPD1_0521 PF01311 Bacterial export proteins, family 1 SJPD1_0523 PF00625 Guanylate kinase SJPD1_0524 PF02416 mttA/Hcf106 family SJPD1_0525 PF05746 DALR anticodon binding domain SJPD1_0525 PF03485 Arginyl tRNA synthetase N terminal domain SJPD1_0525 PF00750 tRNA synthetases class I (R) SJPD1_0527 PF10442 FIST C domain SJPD1_0527 PF00563 EAL domain SJPD1_0527 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0527 PF08495 FIST N domain SJPD1_0530 PF01467 Cytidylyltransferase-like SJPD1_0531 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SJPD1_0531 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SJPD1_0532 PF00162 Phosphoglycerate kinase SJPD1_0533 PF00121 Triosephosphate isomerase SJPD1_0535 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_0537 PF13184 NusA-like KH domain SJPD1_0537 PF08529 NusA N-terminal domain SJPD1_0539 PF04055 Radical SAM superfamily SJPD1_0539 PF01938 TRAM domain SJPD1_0539 PF00919 Uncharacterized protein family UPF0004 SJPD1_0544 PF01171 PP-loop family SJPD1_0545 PF00919 Uncharacterized protein family UPF0004 SJPD1_0545 PF04055 Radical SAM superfamily SJPD1_0546 PF02569 Pantoate-beta-alanine ligase SJPD1_0547 PF00472 RF-1 domain SJPD1_0547 PF03462 PCRF domain SJPD1_0552 PF12170 DNA polymerase III tau subunit V interacting with alpha SJPD1_0552 PF12169 DNA polymerase III subunits gamma and tau domain III SJPD1_0553 PF07497 Rho termination factor, RNA-binding domain SJPD1_0553 PF07498 Rho termination factor, N-terminal domain SJPD1_0553 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SJPD1_0554 PF01255 Putative undecaprenyl diphosphate synthase SJPD1_0555 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0555 PF03707 Bacterial signalling protein N terminal repeat SJPD1_0555 PF00563 EAL domain SJPD1_0556 PF03063 Prismane/CO dehydrogenase family SJPD1_0557 PF08212 Lipocalin-like domain SJPD1_0559 PF08378 Nuclease-related domain SJPD1_0560 PF03976 Polyphosphate kinase 2 (PPK2) SJPD1_0563 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SJPD1_0563 PF00355 Rieske [2Fe-2S] domain SJPD1_0564 PF00033 Cytochrome b/b6/petB SJPD1_0564 PF00032 Cytochrome b(C-terminal)/b6/petD SJPD1_0567 PF00271 Helicase conserved C-terminal domain SJPD1_0567 PF00270 DEAD/DEAH box helicase SJPD1_0568 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SJPD1_0568 PF18381 YcaO cyclodehydratase C-terminal domain SJPD1_0571 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0571 PF02743 Cache domain SJPD1_0572 PF00072 Response regulator receiver domain SJPD1_0573 PF03480 Bacterial extracellular solute-binding protein, family 7 SJPD1_0577 PF02653 Branched-chain amino acid transport system / permease component SJPD1_0578 PF02653 Branched-chain amino acid transport system / permease component SJPD1_0578 PF11862 Domain of unknown function (DUF3382) SJPD1_0579 PF12399 Branched-chain amino acid ATP-binding cassette transporter SJPD1_0579 PF00005 ABC transporter SJPD1_0580 PF00005 ABC transporter SJPD1_0581 PF05140 ResB-like family SJPD1_0581 PF01578 Cytochrome C assembly protein SJPD1_0589 PF00994 Probable molybdopterin binding domain SJPD1_0589 PF02464 Competence-damaged protein SJPD1_0589 PF18146 Damage-inducible protein CinA KH domain SJPD1_0590 PF00133 tRNA synthetases class I (I, L, M and V) SJPD1_0590 PF08264 Anticodon-binding domain of tRNA SJPD1_0592 PF01425 Amidase SJPD1_0593 PF00478 IMP dehydrogenase / GMP reductase domain SJPD1_0593 PF00571 CBS domain SJPD1_0594 PF00561 alpha/beta hydrolase fold SJPD1_0595 PF02609 Exonuclease VII small subunit SJPD1_0597 PF00899 ThiF family SJPD1_0598 PF00155 Aminotransferase class I and II SJPD1_0599 PF02875 Mur ligase family, glutamate ligase domain SJPD1_0599 PF01225 Mur ligase family, catalytic domain SJPD1_0599 PF08245 Mur ligase middle domain SJPD1_0601 PF01713 Smr domain SJPD1_0601 PF00488 MutS domain V SJPD1_0602 PF07687 Peptidase dimerisation domain SJPD1_0602 PF01546 Peptidase family M20/M25/M40 SJPD1_0603 PF01042 Endoribonuclease L-PSP SJPD1_0604 PF06039 Malate:quinone oxidoreductase (Mqo) SJPD1_0608 PF01471 Putative peptidoglycan binding domain SJPD1_0608 PF03572 Peptidase family S41 SJPD1_0608 PF17820 PDZ domain SJPD1_0611 PF02887 Pyruvate kinase, alpha/beta domain SJPD1_0611 PF00391 PEP-utilising enzyme, mobile domain SJPD1_0611 PF00224 Pyruvate kinase, barrel domain SJPD1_0612 PF00829 Ribosomal prokaryotic L21 protein SJPD1_0613 PF01016 Ribosomal L27 protein SJPD1_0614 PF01926 50S ribosome-binding GTPase SJPD1_0614 PF01018 GTP1/OBG SJPD1_0615 PF00696 Amino acid kinase family SJPD1_0616 PF00551 Formyl transferase SJPD1_0616 PF02911 Formyl transferase, C-terminal domain SJPD1_0618 PF13614 AAA domain SJPD1_0619 PF02195 ParB-like nuclease domain SJPD1_0619 PF17762 HTH domain found in ParB protein SJPD1_0621 PF00430 ATP synthase B/B' CF(0) SJPD1_0622 PF00213 ATP synthase delta (OSCP) subunit SJPD1_0623 PF00306 ATP synthase alpha/beta chain, C terminal domain SJPD1_0623 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SJPD1_0623 PF02874 ATP synthase alpha/beta family, beta-barrel domain SJPD1_0624 PF00231 ATP synthase SJPD1_0625 PF02874 ATP synthase alpha/beta family, beta-barrel domain SJPD1_0625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SJPD1_0626 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SJPD1_0627 PF01618 MotA/TolQ/ExbB proton channel family SJPD1_0628 PF02472 Biopolymer transport protein ExbD/TolR SJPD1_0630 PF04052 TolB amino-terminal domain SJPD1_0631 PF00691 OmpA family SJPD1_0631 PF01389 OmpA-like transmembrane domain SJPD1_0633 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SJPD1_0635 PF00698 Acyl transferase domain SJPD1_0636 PF01048 Phosphorylase superfamily SJPD1_0637 PF01171 PP-loop family SJPD1_0639 PF01493 GXGXG motif SJPD1_0639 PF01645 Conserved region in glutamate synthase SJPD1_0639 PF04898 Glutamate synthase central domain SJPD1_0639 PF00310 Glutamine amidotransferases class-II SJPD1_0640 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SJPD1_0640 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_0642 PF17848 Acetyl-coA carboxylase zinc finger domain SJPD1_0642 PF01039 Carboxyl transferase domain SJPD1_0643 PF02590 Predicted SPOUT methyltransferase SJPD1_0644 PF01258 Prokaryotic dksA/traR C4-type zinc finger SJPD1_0646 PF01207 Dihydrouridine synthase (Dus) SJPD1_0650 PF04509 CheC-like family SJPD1_0650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SJPD1_0652 PF02954 Bacterial regulatory protein, Fis family SJPD1_0652 PF00158 Sigma-54 interaction domain SJPD1_0656 PF03960 ArsC family SJPD1_0660 PF01243 Pyridoxamine 5'-phosphate oxidase SJPD1_0661 PF00440 Bacterial regulatory proteins, tetR family SJPD1_0661 PF16925 Tetracyclin repressor-like, C-terminal domain SJPD1_0662 PF00109 Beta-ketoacyl synthase, N-terminal domain SJPD1_0662 PF02801 Beta-ketoacyl synthase, C-terminal domain SJPD1_0663 PF08331 Domain of unknown function (DUF1730) SJPD1_0665 PF01047 MarR family SJPD1_0668 PF13667 ThiC-associated domain SJPD1_0668 PF01964 Radical SAM ThiC family SJPD1_0670 PF00324 Amino acid permease SJPD1_0671 PF01925 Sulfite exporter TauE/SafE SJPD1_0672 PF17760 UvrA interaction domain SJPD1_0672 PF17755 UvrA DNA-binding domain SJPD1_0672 PF00005 ABC transporter SJPD1_0673 PF00375 Sodium:dicarboxylate symporter family SJPD1_0674 PF00375 Sodium:dicarboxylate symporter family SJPD1_0676 PF00476 DNA polymerase family A SJPD1_0676 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SJPD1_0676 PF01367 5'-3' exonuclease, C-terminal SAM fold SJPD1_0677 PF02659 Putative manganese efflux pump SJPD1_0679 PF00226 DnaJ domain SJPD1_0679 PF01556 DnaJ C terminal domain SJPD1_0679 PF00684 DnaJ central domain SJPD1_0681 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0681 PF00072 Response regulator receiver domain SJPD1_0682 PF16750 Sensor domain of 2-component histidine kinase SJPD1_0682 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0682 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0682 PF00672 HAMP domain SJPD1_0683 PF13662 Toprim domain SJPD1_0683 PF02132 RecR protein SJPD1_0684 PF03707 Bacterial signalling protein N terminal repeat SJPD1_0684 PF00563 EAL domain SJPD1_0684 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0685 PF00672 HAMP domain SJPD1_0685 PF02743 Cache domain SJPD1_0685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0686 PF13193 AMP-binding enzyme C-terminal domain SJPD1_0686 PF00501 AMP-binding enzyme SJPD1_0687 PF08501 Shikimate dehydrogenase substrate binding domain SJPD1_0688 PF04715 Anthranilate synthase component I, N terminal region SJPD1_0688 PF00425 chorismate binding enzyme SJPD1_0691 PF00464 Serine hydroxymethyltransferase SJPD1_0692 PF00152 tRNA synthetases class II (D, K and N) SJPD1_0692 PF01336 OB-fold nucleic acid binding domain SJPD1_0693 PF01475 Ferric uptake regulator family SJPD1_0695 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0696 PF00437 Type II/IV secretion system protein SJPD1_0697 PF02686 Glu-tRNAGln amidotransferase C subunit SJPD1_0701 PF03309 Type III pantothenate kinase SJPD1_0702 PF01634 ATP phosphoribosyltransferase SJPD1_0703 PF00072 Response regulator receiver domain SJPD1_0704 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0704 PF01627 Hpt domain SJPD1_0704 PF00072 Response regulator receiver domain SJPD1_0704 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SJPD1_0704 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0704 PF00672 HAMP domain SJPD1_0707 PF02151 UvrB/uvrC motif SJPD1_0707 PF08459 UvrC Helix-hairpin-helix N-terminal SJPD1_0707 PF01541 GIY-YIG catalytic domain SJPD1_0710 PF00890 FAD binding domain SJPD1_0711 PF03600 Citrate transporter SJPD1_0712 PF02540 NAD synthase SJPD1_0712 PF00958 GMP synthase C terminal domain SJPD1_0712 PF00117 Glutamine amidotransferase class-I SJPD1_0714 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SJPD1_0714 PF02843 Phosphoribosylglycinamide synthetase, C domain SJPD1_0714 PF02844 Phosphoribosylglycinamide synthetase, N domain SJPD1_0716 PF03968 OstA-like protein SJPD1_0716 PF04453 LPS transport system D SJPD1_0717 PF01138 3' exoribonuclease family, domain 1 SJPD1_0717 PF03725 3' exoribonuclease family, domain 2 SJPD1_0717 PF00575 S1 RNA binding domain SJPD1_0717 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SJPD1_0717 PF00013 KH domain SJPD1_0718 PF00137 ATP synthase subunit C SJPD1_0722 PF07836 DmpG-like communication domain SJPD1_0722 PF00682 HMGL-like SJPD1_0723 PF01293 Phosphoenolpyruvate carboxykinase SJPD1_0724 PF14698 Argininosuccinate lyase C-terminal SJPD1_0724 PF00206 Lyase SJPD1_0725 PF01230 HIT domain SJPD1_0726 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SJPD1_0726 PF01409 tRNA synthetases class II core domain (F) SJPD1_0727 PF03484 tRNA synthetase B5 domain SJPD1_0727 PF03147 Ferredoxin-fold anticodon binding domain SJPD1_0727 PF01588 Putative tRNA binding domain SJPD1_0727 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SJPD1_0728 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SJPD1_0729 PF02401 LytB protein SJPD1_0730 PF00575 S1 RNA binding domain SJPD1_0732 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SJPD1_0732 PF01842 ACT domain SJPD1_0732 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SJPD1_0734 PF13533 Biotin-lipoyl like SJPD1_0735 PF00873 AcrB/AcrD/AcrF family SJPD1_0736 PF00873 AcrB/AcrD/AcrF family SJPD1_0739 PF09285 Elongation factor P, C-terminal SJPD1_0739 PF08207 Elongation factor P (EF-P) KOW-like domain SJPD1_0739 PF01132 Elongation factor P (EF-P) OB domain SJPD1_0740 PF00672 HAMP domain SJPD1_0740 PF02743 Cache domain SJPD1_0740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0742 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0743 PF05190 MutS family domain IV SJPD1_0743 PF05192 MutS domain III SJPD1_0743 PF05188 MutS domain II SJPD1_0743 PF00488 MutS domain V SJPD1_0743 PF01624 MutS domain I SJPD1_0746 PF17783 CvfB-like winged helix domain SJPD1_0746 PF13509 S1 domain SJPD1_0748 PF00563 EAL domain SJPD1_0748 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0748 PF03707 Bacterial signalling protein N terminal repeat SJPD1_0752 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SJPD1_0774 PF02321 Outer membrane efflux protein SJPD1_0775 PF00873 AcrB/AcrD/AcrF family SJPD1_0776 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_0776 PF00529 HlyD membrane-fusion protein of T1SS SJPD1_0777 PF08447 PAS fold SJPD1_0777 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0778 PF00672 HAMP domain SJPD1_0778 PF17200 Single Cache domain 2 SJPD1_0778 PF00672 HAMP domain SJPD1_0778 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0778 PF17200 Single Cache domain 2 SJPD1_0778 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0780 PF07733 Bacterial DNA polymerase III alpha NTPase domain SJPD1_0780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SJPD1_0780 PF14579 Helix-hairpin-helix motif SJPD1_0780 PF02811 PHP domain SJPD1_0781 PF00989 PAS fold SJPD1_0781 PF08447 PAS fold SJPD1_0781 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0783 PF04172 LrgB-like family SJPD1_0784 PF03788 LrgA family SJPD1_0785 PF02705 K+ potassium transporter SJPD1_0788 PF01098 Cell cycle protein SJPD1_0789 PF01479 S4 domain SJPD1_0789 PF00849 RNA pseudouridylate synthase SJPD1_0791 PF02390 Putative methyltransferase SJPD1_0792 PF00005 ABC transporter SJPD1_0796 PF00696 Amino acid kinase family SJPD1_0797 PF01192 RNA polymerase Rpb6 SJPD1_0798 PF04607 Region found in RelA / SpoT proteins SJPD1_0798 PF13291 ACT domain SJPD1_0798 PF02824 TGS domain SJPD1_0799 PF00579 tRNA synthetases class I (W and Y) SJPD1_0799 PF01479 S4 domain SJPD1_0800 PF03060 Nitronate monooxygenase SJPD1_0801 PF01520 N-acetylmuramoyl-L-alanine amidase SJPD1_0804 PF02938 GAD domain SJPD1_0804 PF00152 tRNA synthetases class II (D, K and N) SJPD1_0804 PF01336 OB-fold nucleic acid binding domain SJPD1_0805 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0807 PF01513 ATP-NAD kinase SJPD1_0808 PF13476 AAA domain SJPD1_0809 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0809 PF07694 5TMR of 5TMR-LYT SJPD1_0810 PF01026 TatD related DNase SJPD1_0811 PF05257 CHAP domain SJPD1_0811 PF01476 LysM domain SJPD1_0812 PF05036 Sporulation related domain SJPD1_0812 PF03330 Lytic transglycolase SJPD1_0813 PF00475 Imidazoleglycerol-phosphate dehydratase SJPD1_0817 PF01926 50S ribosome-binding GTPase SJPD1_0820 PF03717 Penicillin-binding Protein dimerisation domain SJPD1_0820 PF00905 Penicillin binding protein transpeptidase domain SJPD1_0820 PF05223 NTF2-like N-terminal transpeptidase domain SJPD1_0823 PF02130 Uncharacterized protein family UPF0054 SJPD1_0825 PF01588 Putative tRNA binding domain SJPD1_0825 PF00133 tRNA synthetases class I (I, L, M and V) SJPD1_0825 PF09334 tRNA synthetases class I (M) SJPD1_0827 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SJPD1_0832 PF00749 tRNA synthetases class I (E and Q), catalytic domain SJPD1_0833 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SJPD1_0833 PF00749 tRNA synthetases class I (E and Q), catalytic domain SJPD1_0837 PF05860 haemagglutination activity domain SJPD1_0839 PF03466 LysR substrate binding domain SJPD1_0839 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SJPD1_0840 PF02910 Fumarate reductase flavoprotein C-term SJPD1_0840 PF00890 FAD binding domain SJPD1_0841 PF13183 4Fe-4S dicluster domain SJPD1_0841 PF13085 2Fe-2S iron-sulfur cluster binding domain SJPD1_0842 PF02754 Cysteine-rich domain SJPD1_0845 PF03264 NapC/NirT cytochrome c family, N-terminal region SJPD1_0846 PF02335 Cytochrome c552 SJPD1_0847 PF05140 ResB-like family SJPD1_0847 PF01578 Cytochrome C assembly protein SJPD1_0851 PF06821 Serine hydrolase SJPD1_0852 PF01810 LysE type translocator SJPD1_0853 PF00535 Glycosyl transferase family 2 SJPD1_0854 PF01636 Phosphotransferase enzyme family SJPD1_0856 PF09335 SNARE associated Golgi protein SJPD1_0858 PF09335 SNARE associated Golgi protein SJPD1_0859 PF13847 Methyltransferase domain SJPD1_0860 PF00230 Major intrinsic protein SJPD1_0862 PF00892 EamA-like transporter family SJPD1_0863 PF12833 Helix-turn-helix domain SJPD1_0865 PF01040 UbiA prenyltransferase family SJPD1_0871 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SJPD1_0871 PF02272 DHHA1 domain SJPD1_0871 PF01411 tRNA synthetases class II (A) SJPD1_0874 PF10518 TAT (twin-arginine translocation) pathway signal sequence SJPD1_0874 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0874 PF00384 Molybdopterin oxidoreductase SJPD1_0874 PF01568 Molydopterin dinucleotide binding domain SJPD1_0875 PF12800 4Fe-4S binding domain SJPD1_0875 PF12838 4Fe-4S dicluster domain SJPD1_0876 PF12801 4Fe-4S binding domain SJPD1_0876 PF00037 4Fe-4S binding domain SJPD1_0877 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SJPD1_0884 PF02001 Protein of unknown function DUF134 SJPD1_0888 PF01654 Cytochrome bd terminal oxidase subunit I SJPD1_0889 PF02322 Cytochrome bd terminal oxidase subunit II SJPD1_0891 PF06071 Protein of unknown function (DUF933) SJPD1_0891 PF01926 50S ribosome-binding GTPase SJPD1_0895 PF01568 Molydopterin dinucleotide binding domain SJPD1_0895 PF00384 Molybdopterin oxidoreductase SJPD1_0895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0898 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0898 PF00072 Response regulator receiver domain SJPD1_0900 PF02743 Cache domain SJPD1_0900 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_0901 PF00672 HAMP domain SJPD1_0901 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_0901 PF18698 Histidine kinase sensor domain SJPD1_0902 PF01627 Hpt domain SJPD1_0902 PF00072 Response regulator receiver domain SJPD1_0902 PF00486 Transcriptional regulatory protein, C terminal SJPD1_0904 PF18364 Molybdopterin oxidoreductase N-terminal domain SJPD1_0904 PF00384 Molybdopterin oxidoreductase SJPD1_0904 PF01568 Molydopterin dinucleotide binding domain SJPD1_0905 PF00034 Cytochrome c SJPD1_0906 PF00355 Rieske [2Fe-2S] domain SJPD1_0906 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SJPD1_0907 PF00033 Cytochrome b/b6/petB SJPD1_0907 PF00032 Cytochrome b(C-terminal)/b6/petD SJPD1_0910 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_0910 PF10442 FIST C domain SJPD1_0910 PF08495 FIST N domain SJPD1_0910 PF00563 EAL domain SJPD1_0911 PF02666 Phosphatidylserine decarboxylase SJPD1_0912 PF03880 DbpA RNA binding domain SJPD1_0912 PF00270 DEAD/DEAH box helicase SJPD1_0912 PF00271 Helicase conserved C-terminal domain SJPD1_0915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SJPD1_0915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SJPD1_0916 PF00672 HAMP domain SJPD1_0916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0916 PF17202 Single cache domain 3 SJPD1_0917 PF00682 HMGL-like SJPD1_0917 PF08502 LeuA allosteric (dimerisation) domain SJPD1_0918 PF01209 ubiE/COQ5 methyltransferase family SJPD1_0920 PF01810 LysE type translocator SJPD1_0921 PF11849 Domain of unknown function (DUF3369) SJPD1_0922 PF17202 Single cache domain 3 SJPD1_0922 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_0922 PF00672 HAMP domain SJPD1_0924 PF01709 Transcriptional regulator SJPD1_0926 PF16868 NMT1-like family SJPD1_0929 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 SJPD1_0929 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SJPD1_0931 PF00118 TCP-1/cpn60 chaperonin family SJPD1_0932 PF00166 Chaperonin 10 Kd subunit SJPD1_0942 PF01520 N-acetylmuramoyl-L-alanine amidase SJPD1_0942 PF01471 Putative peptidoglycan binding domain SJPD1_0963 PF07804 HipA-like C-terminal domain SJPD1_0963 PF13657 HipA N-terminal domain SJPD1_0971 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system SJPD1_0973 PF00271 Helicase conserved C-terminal domain SJPD1_0976 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_0976 PF13359 DDE superfamily endonuclease SJPD1_0977 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_0977 PF13359 DDE superfamily endonuclease SJPD1_0989 PF00005 ABC transporter SJPD1_0989 PF12704 MacB-like periplasmic core domain SJPD1_0989 PF02687 FtsX-like permease family SJPD1_0993 PF00005 ABC transporter SJPD1_0994 PF13237 4Fe-4S dicluster domain SJPD1_0994 PF12801 4Fe-4S binding domain SJPD1_0997 PF12800 4Fe-4S binding domain SJPD1_0997 PF12838 4Fe-4S dicluster domain SJPD1_1000 PF13473 Cupredoxin-like domain SJPD1_1000 PF18793 Nitrous oxide reductase propeller repeat 2 SJPD1_1000 PF18764 Nitrous oxide reductase propeller repeat SJPD1_1001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1001 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1001 PF00989 PAS fold SJPD1_1002 PF00072 Response regulator receiver domain SJPD1_1002 PF12833 Helix-turn-helix domain SJPD1_1003 PF00034 Cytochrome c SJPD1_1004 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SJPD1_1004 PF00355 Rieske [2Fe-2S] domain SJPD1_1005 PF00032 Cytochrome b(C-terminal)/b6/petD SJPD1_1005 PF00033 Cytochrome b/b6/petB SJPD1_1006 PF02167 Cytochrome C1 family SJPD1_1009 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1009 PF08495 FIST N domain SJPD1_1009 PF00563 EAL domain SJPD1_1009 PF10442 FIST C domain SJPD1_1010 PF00672 HAMP domain SJPD1_1010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1010 PF12729 Four helix bundle sensory module for signal transduction SJPD1_1013 PF00589 Phage integrase family SJPD1_1013 PF14659 Phage integrase, N-terminal SAM-like domain SJPD1_1020 PF00171 Aldehyde dehydrogenase family SJPD1_1021 PF04397 LytTr DNA-binding domain SJPD1_1021 PF00072 Response regulator receiver domain SJPD1_1022 PF12282 Signal transduction histidine kinase SJPD1_1022 PF07568 Histidine kinase SJPD1_1022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1025 PF02913 FAD linked oxidases, C-terminal domain SJPD1_1025 PF01565 FAD binding domain SJPD1_1027 PF05981 CreA protein SJPD1_1033 PF00037 4Fe-4S binding domain SJPD1_1033 PF12798 4Fe-4S binding domain SJPD1_1034 PF00361 Proton-conducting membrane transporter SJPD1_1035 PF00146 NADH dehydrogenase SJPD1_1036 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SJPD1_1037 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SJPD1_1037 PF00361 Proton-conducting membrane transporter SJPD1_1038 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SJPD1_1038 PF00374 Nickel-dependent hydrogenase SJPD1_1038 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SJPD1_1040 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_1043 PF01226 Formate/nitrite transporter SJPD1_1065 PF00072 Response regulator receiver domain SJPD1_1065 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1066 PF13359 DDE superfamily endonuclease SJPD1_1066 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1067 PF13359 DDE superfamily endonuclease SJPD1_1067 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1069 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1069 PF00989 PAS fold SJPD1_1071 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SJPD1_1071 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SJPD1_1072 PF13247 4Fe-4S dicluster domain SJPD1_1072 PF00037 4Fe-4S binding domain SJPD1_1073 PF03916 Polysulphide reductase, NrfD SJPD1_1074 PF05140 ResB-like family SJPD1_1074 PF01578 Cytochrome C assembly protein SJPD1_1077 PF05573 NosL SJPD1_1080 PF00005 ABC transporter SJPD1_1084 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1084 PF00563 EAL domain SJPD1_1084 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1086 PF04174 A circularly permuted ATPgrasp SJPD1_1087 PF01841 Transglutaminase-like superfamily SJPD1_1087 PF08379 Bacterial transglutaminase-like N-terminal region SJPD1_1092 PF14403 Circularly permuted ATP-grasp type 2 SJPD1_1094 PF01814 Hemerythrin HHE cation binding domain SJPD1_1095 PF06738 Putative threonine/serine exporter SJPD1_1096 PF06738 Putative threonine/serine exporter SJPD1_1096 PF12821 Threonine/Serine exporter, ThrE SJPD1_1097 PF12729 Four helix bundle sensory module for signal transduction SJPD1_1097 PF00672 HAMP domain SJPD1_1097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1098 PF00403 Heavy-metal-associated domain SJPD1_1099 PF01022 Bacterial regulatory protein, arsR family SJPD1_1102 PF00464 Serine hydroxymethyltransferase SJPD1_1103 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SJPD1_1103 PF02805 Metal binding domain of Ada SJPD1_1103 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SJPD1_1103 PF12833 Helix-turn-helix domain SJPD1_1104 PF02743 Cache domain SJPD1_1104 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1104 PF00672 HAMP domain SJPD1_1105 PF02581 Thiamine monophosphate synthase SJPD1_1108 PF03006 Haemolysin-III related SJPD1_1109 PF01810 LysE type translocator SJPD1_1110 PF00892 EamA-like transporter family SJPD1_1114 PF00929 Exonuclease SJPD1_1114 PF14579 Helix-hairpin-helix motif SJPD1_1114 PF07733 Bacterial DNA polymerase III alpha NTPase domain SJPD1_1114 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SJPD1_1114 PF11490 DNA polymerase III polC-type N-terminus II SJPD1_1114 PF02811 PHP domain SJPD1_1118 PF01758 Sodium Bile acid symporter family SJPD1_1119 PF01717 Cobalamin-independent synthase, Catalytic domain SJPD1_1119 PF08267 Cobalamin-independent synthase, N-terminal domain SJPD1_1121 PF01435 Peptidase family M48 SJPD1_1125 PF01739 CheR methyltransferase, SAM binding domain SJPD1_1126 PF00072 Response regulator receiver domain SJPD1_1126 PF01339 CheB methylesterase SJPD1_1127 PF00883 Cytosol aminopeptidase family, catalytic domain SJPD1_1127 PF02789 Cytosol aminopeptidase family, N-terminal domain SJPD1_1129 PF00291 Pyridoxal-phosphate dependent enzyme SJPD1_1130 PF00156 Phosphoribosyl transferase domain SJPD1_1132 PF02502 Ribose/Galactose Isomerase SJPD1_1133 PF02163 Peptidase family M50 SJPD1_1134 PF10502 Signal peptidase, peptidase S26 SJPD1_1135 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SJPD1_1135 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SJPD1_1137 PF00202 Aminotransferase class-III SJPD1_1140 PF04055 Radical SAM superfamily SJPD1_1142 PF05193 Peptidase M16 inactive domain SJPD1_1143 PF04851 Type III restriction enzyme, res subunit SJPD1_1143 PF00271 Helicase conserved C-terminal domain SJPD1_1144 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SJPD1_1144 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SJPD1_1149 PF02623 FliW protein SJPD1_1150 PF13525 Outer membrane lipoprotein SJPD1_1151 PF02190 ATP-dependent protease La (LON) substrate-binding domain SJPD1_1151 PF00004 ATPase family associated with various cellular activities (AAA) SJPD1_1151 PF05362 Lon protease (S16) C-terminal proteolytic domain SJPD1_1152 PF01084 Ribosomal protein S18 SJPD1_1153 PF00436 Single-strand binding protein family SJPD1_1154 PF01250 Ribosomal protein S6 SJPD1_1155 PF06144 DNA polymerase III, delta subunit SJPD1_1156 PF00773 RNB domain SJPD1_1158 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SJPD1_1158 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SJPD1_1159 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SJPD1_1160 PF03776 Septum formation topological specificity factor MinE SJPD1_1161 PF04748 Divergent polysaccharide deacetylase SJPD1_1163 PF01925 Sulfite exporter TauE/SafE SJPD1_1164 PF04073 Aminoacyl-tRNA editing domain SJPD1_1166 PF03315 Serine dehydratase beta chain SJPD1_1166 PF03313 Serine dehydratase alpha chain SJPD1_1167 PF03652 Holliday junction resolvase SJPD1_1168 PF03458 UPF0126 domain SJPD1_1169 PF00202 Aminotransferase class-III SJPD1_1172 PF01648 4'-phosphopantetheinyl transferase superfamily SJPD1_1173 PF03748 Flagellar basal body-associated protein FliL SJPD1_1174 PF18073 Rubredoxin metal binding domain SJPD1_1175 PF00448 SRP54-type protein, GTPase domain SJPD1_1176 PF00578 AhpC/TSA family SJPD1_1177 PF01966 HD domain SJPD1_1177 PF12072 Domain of unknown function (DUF3552) SJPD1_1178 PF00005 ABC transporter SJPD1_1178 PF00664 ABC transporter transmembrane region SJPD1_1182 PF01758 Sodium Bile acid symporter family SJPD1_1183 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SJPD1_1185 PF00072 Response regulator receiver domain SJPD1_1185 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1186 PF00072 Response regulator receiver domain SJPD1_1186 PF01966 HD domain SJPD1_1187 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1187 PF00563 EAL domain SJPD1_1187 PF08448 PAS fold SJPD1_1188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1188 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1188 PF00497 Bacterial extracellular solute-binding proteins, family 3 SJPD1_1189 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1189 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1191 PF04073 Aminoacyl-tRNA editing domain SJPD1_1199 PF00925 GTP cyclohydrolase II SJPD1_1199 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SJPD1_1200 PF02254 TrkA-N domain SJPD1_1200 PF00999 Sodium/hydrogen exchanger family SJPD1_1202 PF00672 HAMP domain SJPD1_1202 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1202 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1203 PF00149 Calcineurin-like phosphoesterase SJPD1_1204 PF04264 YceI-like domain SJPD1_1207 PF00005 ABC transporter SJPD1_1213 PF00465 Iron-containing alcohol dehydrogenase SJPD1_1214 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1214 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1214 PF00563 EAL domain SJPD1_1219 PF01327 Polypeptide deformylase SJPD1_1220 PF03061 Thioesterase superfamily SJPD1_1223 PF03167 Uracil DNA glycosylase superfamily SJPD1_1226 PF00682 HMGL-like SJPD1_1227 PF04055 Radical SAM superfamily SJPD1_1227 PF02579 Dinitrogenase iron-molybdenum cofactor SJPD1_1228 PF00072 Response regulator receiver domain SJPD1_1229 PF00072 Response regulator receiver domain SJPD1_1229 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1230 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1230 PF10442 FIST C domain SJPD1_1230 PF08495 FIST N domain SJPD1_1230 PF00563 EAL domain SJPD1_1231 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1232 PF02954 Bacterial regulatory protein, Fis family SJPD1_1232 PF00072 Response regulator receiver domain SJPD1_1232 PF00158 Sigma-54 interaction domain SJPD1_1233 PF00258 Flavodoxin SJPD1_1233 PF00753 Metallo-beta-lactamase superfamily SJPD1_1234 PF02579 Dinitrogenase iron-molybdenum cofactor SJPD1_1236 PF00148 Nitrogenase component 1 type Oxidoreductase SJPD1_1238 PF00890 FAD binding domain SJPD1_1238 PF14537 Cytochrome c3 SJPD1_1243 PF02574 Homocysteine S-methyltransferase SJPD1_1245 PF00924 Mechanosensitive ion channel SJPD1_1245 PF12794 Mechanosensitive ion channel inner membrane domain 1 SJPD1_1245 PF12795 Mechanosensitive ion channel porin domain SJPD1_1246 PF02579 Dinitrogenase iron-molybdenum cofactor SJPD1_1247 PF03270 Protein of unknown function, DUF269 SJPD1_1248 PF00258 Flavodoxin SJPD1_1250 PF04319 NifZ domain SJPD1_1253 PF00309 Sigma-54 factor, Activator interacting domain (AID) SJPD1_1253 PF04963 Sigma-54 factor, core binding domain SJPD1_1253 PF04552 Sigma-54, DNA binding domain SJPD1_1256 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SJPD1_1258 PF00905 Penicillin binding protein transpeptidase domain SJPD1_1259 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1259 PF00563 EAL domain SJPD1_1259 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1263 PF01863 Protein of unknown function DUF45 SJPD1_1265 PF02567 Phenazine biosynthesis-like protein SJPD1_1266 PF00892 EamA-like transporter family SJPD1_1267 PF12833 Helix-turn-helix domain SJPD1_1268 PF00561 alpha/beta hydrolase fold SJPD1_1271 PF13536 Putative multidrug resistance efflux transporter SJPD1_1273 PF17158 Membrane-associated sensor, integral membrane domain SJPD1_1273 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1275 PF01063 Amino-transferase class IV SJPD1_1277 PF00155 Aminotransferase class I and II SJPD1_1277 PF00392 Bacterial regulatory proteins, gntR family SJPD1_1279 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1279 PF00672 HAMP domain SJPD1_1284 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SJPD1_1289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1289 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1290 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1290 PF00072 Response regulator receiver domain SJPD1_1292 PF00583 Acetyltransferase (GNAT) family SJPD1_1292 PF00795 Carbon-nitrogen hydrolase SJPD1_1293 PF00075 RNase H SJPD1_1296 PF00672 HAMP domain SJPD1_1296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1296 PF17202 Single cache domain 3 SJPD1_1298 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_1298 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SJPD1_1299 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SJPD1_1300 PF13247 4Fe-4S dicluster domain SJPD1_1301 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SJPD1_1301 PF00374 Nickel-dependent hydrogenase SJPD1_1302 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SJPD1_1304 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_1307 PF05977 Transmembrane secretion effector SJPD1_1308 PF00857 Isochorismatase family SJPD1_1310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SJPD1_1311 PF00155 Aminotransferase class I and II SJPD1_1312 PF02492 CobW/HypB/UreG, nucleotide-binding domain SJPD1_1312 PF07683 Cobalamin synthesis protein cobW C-terminal domain SJPD1_1313 PF04328 Selenoprotein, putative SJPD1_1314 PF13722 5TM C-terminal transporter carbon starvation CstA SJPD1_1314 PF02554 Carbon starvation protein CstA SJPD1_1316 PF02910 Fumarate reductase flavoprotein C-term SJPD1_1316 PF00890 FAD binding domain SJPD1_1317 PF06988 NifT/FixU protein SJPD1_1318 PF13185 GAF domain SJPD1_1318 PF02954 Bacterial regulatory protein, Fis family SJPD1_1318 PF00158 Sigma-54 interaction domain SJPD1_1323 PF00586 AIR synthase related protein, N-terminal domain SJPD1_1323 PF02769 AIR synthase related protein, C-terminal domain SJPD1_1324 PF01142 tRNA pseudouridine synthase D (TruD) SJPD1_1325 PF00999 Sodium/hydrogen exchanger family SJPD1_1325 PF02080 TrkA-C domain SJPD1_1325 PF02254 TrkA-N domain SJPD1_1326 PF00563 EAL domain SJPD1_1326 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1326 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1328 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1329 PF08543 Phosphomethylpyrimidine kinase SJPD1_1331 PF02110 Hydroxyethylthiazole kinase family SJPD1_1333 PF02743 Cache domain SJPD1_1333 PF00672 HAMP domain SJPD1_1333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1336 PF12848 ABC transporter SJPD1_1336 PF16326 ABC transporter C-terminal domain SJPD1_1336 PF00005 ABC transporter SJPD1_1337 PF00691 OmpA family SJPD1_1337 PF13677 Membrane MotB of proton-channel complex MotA/MotB SJPD1_1338 PF01618 MotA/TolQ/ExbB proton channel family SJPD1_1339 PF00440 Bacterial regulatory proteins, tetR family SJPD1_1339 PF08361 MAATS-type transcriptional repressor, C-terminal region SJPD1_1340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_1341 PF00873 AcrB/AcrD/AcrF family SJPD1_1342 PF02321 Outer membrane efflux protein SJPD1_1343 PF01638 HxlR-like helix-turn-helix SJPD1_1344 PF00106 short chain dehydrogenase SJPD1_1345 PF02321 Outer membrane efflux protein SJPD1_1347 PF00873 AcrB/AcrD/AcrF family SJPD1_1351 PF00881 Nitroreductase family SJPD1_1357 PF00501 AMP-binding enzyme SJPD1_1357 PF14535 AMP-binding enzyme C-terminal domain SJPD1_1361 PF00474 Sodium:solute symporter family SJPD1_1363 PF02561 Flagellar protein FliS SJPD1_1364 PF02465 Flagellar hook-associated protein 2 N-terminus SJPD1_1364 PF07195 Flagellar hook-associated protein 2 C-terminus SJPD1_1364 PF07196 Flagellin hook IN motif SJPD1_1369 PF02119 Flagellar P-ring protein SJPD1_1373 PF00460 Flagella basal body rod protein SJPD1_1373 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SJPD1_1374 PF12911 N-terminal TM domain of oligopeptide transport permease C SJPD1_1374 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_1376 PF01740 STAS domain SJPD1_1376 PF00916 Sulfate permease family SJPD1_1377 PF01361 Tautomerase enzyme SJPD1_1378 PF00119 ATP synthase A chain SJPD1_1381 PF02934 GatB/GatE catalytic domain SJPD1_1381 PF02637 GatB domain SJPD1_1382 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SJPD1_1382 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SJPD1_1383 PF00933 Glycosyl hydrolase family 3 N terminal domain SJPD1_1385 PF01416 tRNA pseudouridine synthase SJPD1_1387 PF01478 Type IV leader peptidase family SJPD1_1387 PF06750 Bacterial Peptidase A24 N-terminal domain SJPD1_1389 PF04127 DNA / pantothenate metabolism flavoprotein SJPD1_1389 PF02441 Flavoprotein SJPD1_1390 PF00132 Bacterial transferase hexapeptide (six repeats) SJPD1_1390 PF12804 MobA-like NTP transferase domain SJPD1_1391 PF00813 FliP family SJPD1_1392 PF01263 Aldose 1-epimerase SJPD1_1393 PF02525 Flavodoxin-like fold SJPD1_1396 PF13194 Domain of unknown function (DUF4010) SJPD1_1397 PF08497 Radical SAM N-terminal SJPD1_1397 PF04055 Radical SAM superfamily SJPD1_1398 PF00342 Phosphoglucose isomerase SJPD1_1401 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_1401 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SJPD1_1402 PF00374 Nickel-dependent hydrogenase SJPD1_1403 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SJPD1_1403 PF10518 TAT (twin-arginine translocation) pathway signal sequence SJPD1_1403 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_1404 PF00374 Nickel-dependent hydrogenase SJPD1_1405 PF01292 Prokaryotic cytochrome b561 SJPD1_1406 PF01750 Hydrogenase maturation protease SJPD1_1408 PF00708 Acylphosphatase SJPD1_1408 PF07503 HypF finger SJPD1_1408 PF17788 HypF Kae1-like domain SJPD1_1408 PF01300 Telomere recombination SJPD1_1409 PF08753 NikR C terminal nickel binding domain SJPD1_1409 PF01402 Ribbon-helix-helix protein, copG family SJPD1_1411 PF02492 CobW/HypB/UreG, nucleotide-binding domain SJPD1_1412 PF01455 HupF/HypC family SJPD1_1413 PF01924 Hydrogenase formation hypA family SJPD1_1414 PF02769 AIR synthase related protein, C-terminal domain SJPD1_1414 PF00586 AIR synthase related protein, N-terminal domain SJPD1_1415 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SJPD1_1416 PF00583 Acetyltransferase (GNAT) family SJPD1_1417 PF13419 Haloacid dehalogenase-like hydrolase SJPD1_1420 PF03971 Monomeric isocitrate dehydrogenase SJPD1_1421 PF00056 lactate/malate dehydrogenase, NAD binding domain SJPD1_1421 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SJPD1_1422 PF00549 CoA-ligase SJPD1_1422 PF08442 ATP-grasp domain SJPD1_1423 PF00549 CoA-ligase SJPD1_1423 PF02629 CoA binding domain SJPD1_1425 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SJPD1_1425 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SJPD1_1425 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SJPD1_1431 PF10415 Fumarase C C-terminus SJPD1_1431 PF00206 Lyase SJPD1_1436 PF00005 ABC transporter SJPD1_1439 PF01914 MarC family integral membrane protein SJPD1_1442 PF00072 Response regulator receiver domain SJPD1_1442 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1443 PF01168 Alanine racemase, N-terminal domain SJPD1_1444 PF17820 PDZ domain SJPD1_1444 PF02163 Peptidase family M50 SJPD1_1445 PF01066 CDP-alcohol phosphatidyltransferase SJPD1_1447 PF00701 Dihydrodipicolinate synthetase family SJPD1_1449 PF01180 Dihydroorotate dehydrogenase SJPD1_1450 PF00664 ABC transporter transmembrane region SJPD1_1450 PF00005 ABC transporter SJPD1_1451 PF09190 DALR domain SJPD1_1451 PF01406 tRNA synthetases class I (C) catalytic domain SJPD1_1452 PF03023 Lipid II flippase MurJ SJPD1_1454 PF01330 RuvA N terminal domain SJPD1_1454 PF07499 RuvA, C-terminal domain SJPD1_1455 PF07478 D-ala D-ala ligase C-terminus SJPD1_1455 PF01820 D-ala D-ala ligase N-terminus SJPD1_1458 PF00708 Acylphosphatase SJPD1_1459 PF08245 Mur ligase middle domain SJPD1_1459 PF02875 Mur ligase family, glutamate ligase domain SJPD1_1459 PF01225 Mur ligase family, catalytic domain SJPD1_1460 PF07085 DRTGG domain SJPD1_1460 PF01515 Phosphate acetyl/butaryl transferase SJPD1_1461 PF00871 Acetokinase family SJPD1_1462 PF09424 Yqey-like protein SJPD1_1463 PF02107 Flagellar L-ring protein SJPD1_1465 PF00482 Type II secretion system (T2SS), protein F SJPD1_1466 PF00437 Type II/IV secretion system protein SJPD1_1473 PF01926 50S ribosome-binding GTPase SJPD1_1473 PF07650 KH domain SJPD1_1474 PF10431 C-terminal, D2-small domain, of ClpB protein SJPD1_1474 PF07724 AAA domain (Cdc48 subfamily) SJPD1_1475 PF00227 Proteasome subunit SJPD1_1476 PF03948 Ribosomal protein L9, C-terminal domain SJPD1_1476 PF01281 Ribosomal protein L9, N-terminal domain SJPD1_1478 PF00764 Arginosuccinate synthase SJPD1_1479 PF01479 S4 domain SJPD1_1480 PF02885 Glycosyl transferase family, helical bundle domain SJPD1_1480 PF00591 Glycosyl transferase family, a/b domain SJPD1_1481 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SJPD1_1482 PF12399 Branched-chain amino acid ATP-binding cassette transporter SJPD1_1482 PF00005 ABC transporter SJPD1_1483 PF04552 Sigma-54, DNA binding domain SJPD1_1483 PF04963 Sigma-54 factor, core binding domain SJPD1_1483 PF00309 Sigma-54 factor, Activator interacting domain (AID) SJPD1_1485 PF04377 Arginine-tRNA-protein transferase, C terminus SJPD1_1485 PF04376 Arginine-tRNA-protein transferase, N terminus SJPD1_1487 PF14659 Phage integrase, N-terminal SAM-like domain SJPD1_1487 PF00589 Phage integrase family SJPD1_1488 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1488 PF13359 DDE superfamily endonuclease SJPD1_1489 PF13359 DDE superfamily endonuclease SJPD1_1489 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1492 PF02743 Cache domain SJPD1_1492 PF00672 HAMP domain SJPD1_1492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1493 PF00072 Response regulator receiver domain SJPD1_1496 PF00158 Sigma-54 interaction domain SJPD1_1496 PF02954 Bacterial regulatory protein, Fis family SJPD1_1496 PF00072 Response regulator receiver domain SJPD1_1499 PF14537 Cytochrome c3 SJPD1_1499 PF00890 FAD binding domain SJPD1_1500 PF00925 GTP cyclohydrolase II SJPD1_1501 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SJPD1_1501 PF00925 GTP cyclohydrolase II SJPD1_1502 PF00885 6,7-dimethyl-8-ribityllumazine synthase SJPD1_1507 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1507 PF00989 PAS fold SJPD1_1507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1508 PF00072 Response regulator receiver domain SJPD1_1508 PF01966 HD domain SJPD1_1511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1511 PF13426 PAS domain SJPD1_1511 PF00072 Response regulator receiver domain SJPD1_1513 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1513 PF13359 DDE superfamily endonuclease SJPD1_1514 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1514 PF13359 DDE superfamily endonuclease SJPD1_1515 PF00072 Response regulator receiver domain SJPD1_1515 PF04397 LytTr DNA-binding domain SJPD1_1517 PF12800 4Fe-4S binding domain SJPD1_1517 PF12838 4Fe-4S dicluster domain SJPD1_1520 PF03186 CobD/Cbib protein SJPD1_1521 PF00155 Aminotransferase class I and II SJPD1_1522 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SJPD1_1523 PF07685 CobB/CobQ-like glutamine amidotransferase domain SJPD1_1526 PF02654 Cobalamin-5-phosphate synthase SJPD1_1527 PF00300 Histidine phosphatase superfamily (branch 1) SJPD1_1528 PF06180 Cobalt chelatase (CbiK) SJPD1_1530 PF00005 ABC transporter SJPD1_1532 PF02570 Precorrin-8X methylmutase SJPD1_1533 PF01888 CbiD SJPD1_1535 PF05175 Methyltransferase small domain SJPD1_1536 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SJPD1_1537 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SJPD1_1538 PF11760 Cobalamin synthesis G N-terminal SJPD1_1538 PF11761 Cobalamin biosynthesis central region SJPD1_1538 PF01890 Cobalamin synthesis G C-terminus SJPD1_1539 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SJPD1_1539 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SJPD1_1541 PF02571 Precorrin-6x reductase CbiJ/CobK SJPD1_1542 PF00664 ABC transporter transmembrane region SJPD1_1542 PF00005 ABC transporter SJPD1_1543 PF07685 CobB/CobQ-like glutamine amidotransferase domain SJPD1_1543 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SJPD1_1544 PF14824 Sirohaem biosynthesis protein central SJPD1_1544 PF10414 Sirohaem synthase dimerisation region SJPD1_1544 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SJPD1_1545 PF18665 Tetracyclin repressor-like, C-terminal domain SJPD1_1545 PF00440 Bacterial regulatory proteins, tetR family SJPD1_1566 PF13356 Arm DNA-binding domain SJPD1_1566 PF00589 Phage integrase family SJPD1_1568 PF00216 Bacterial DNA-binding protein SJPD1_1570 PF01580 FtsK/SpoIIIE family SJPD1_1570 PF17854 FtsK alpha domain SJPD1_1570 PF09397 Ftsk gamma domain SJPD1_1571 PF00330 Aconitase family (aconitate hydratase) SJPD1_1571 PF06434 Aconitate hydratase 2 N-terminus SJPD1_1571 PF11791 Aconitate B N-terminal domain SJPD1_1572 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SJPD1_1573 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SJPD1_1573 PF00391 PEP-utilising enzyme, mobile domain SJPD1_1573 PF02896 PEP-utilising enzyme, TIM barrel domain SJPD1_1576 PF07690 Major Facilitator Superfamily SJPD1_1580 PF05958 tRNA (Uracil-5-)-methyltransferase SJPD1_1581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1581 PF02743 Cache domain SJPD1_1581 PF00672 HAMP domain SJPD1_1582 PF13380 CoA binding domain SJPD1_1583 PF00291 Pyridoxal-phosphate dependent enzyme SJPD1_1583 PF13291 ACT domain SJPD1_1585 PF00005 ABC transporter SJPD1_1586 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_1587 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_1588 PF00497 Bacterial extracellular solute-binding proteins, family 3 SJPD1_1589 PF01474 Class-II DAHP synthetase family SJPD1_1591 PF09335 SNARE associated Golgi protein SJPD1_1592 PF12704 MacB-like periplasmic core domain SJPD1_1592 PF02687 FtsX-like permease family SJPD1_1592 PF00005 ABC transporter SJPD1_1593 PF00171 Aldehyde dehydrogenase family SJPD1_1594 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_1596 PF08468 Methyltransferase small domain N-terminal SJPD1_1596 PF05175 Methyltransferase small domain SJPD1_1597 PF03692 Putative zinc- or iron-chelating domain SJPD1_1599 PF00218 Indole-3-glycerol phosphate synthase SJPD1_1602 PF00005 ABC transporter SJPD1_1605 PF13190 PDGLE domain SJPD1_1605 PF01891 Cobalt uptake substrate-specific transmembrane region SJPD1_1606 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SJPD1_1607 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SJPD1_1610 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_1612 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SJPD1_1612 PF00205 Thiamine pyrophosphate enzyme, central domain SJPD1_1612 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SJPD1_1613 PF10369 Small subunit of acetolactate synthase SJPD1_1614 PF00132 Bacterial transferase hexapeptide (six repeats) SJPD1_1614 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SJPD1_1616 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_1616 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SJPD1_1617 PF00155 Aminotransferase class I and II SJPD1_1618 PF00148 Nitrogenase component 1 type Oxidoreductase SJPD1_1619 PF02954 Bacterial regulatory protein, Fis family SJPD1_1619 PF00158 Sigma-54 interaction domain SJPD1_1619 PF01590 GAF domain SJPD1_1621 PF00148 Nitrogenase component 1 type Oxidoreductase SJPD1_1622 PF03139 Vanadium/alternative nitrogenase delta subunit SJPD1_1623 PF00148 Nitrogenase component 1 type Oxidoreductase SJPD1_1624 PF00132 Bacterial transferase hexapeptide (six repeats) SJPD1_1625 PF17810 Arginine decarboxylase helical bundle domain SJPD1_1625 PF17944 Arginine decarboxylase C-terminal helical extension SJPD1_1625 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SJPD1_1626 PF13393 Histidyl-tRNA synthetase SJPD1_1626 PF03129 Anticodon binding domain SJPD1_1627 PF02223 Thymidylate kinase SJPD1_1628 PF01467 Cytidylyltransferase-like SJPD1_1629 PF02441 Flavoprotein SJPD1_1632 PF00672 HAMP domain SJPD1_1632 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1632 PF02743 Cache domain SJPD1_1633 PF03454 MoeA C-terminal region (domain IV) SJPD1_1633 PF00994 Probable molybdopterin binding domain SJPD1_1633 PF03453 MoeA N-terminal region (domain I and II) SJPD1_1634 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SJPD1_1637 PF00731 AIR carboxylase SJPD1_1638 PF02540 NAD synthase SJPD1_1639 PF01969 Protein of unknown function DUF111 SJPD1_1640 PF09861 Lactate racemase N-terminal domain SJPD1_1641 PF05681 Fumarate hydratase (Fumerase) SJPD1_1641 PF05683 Fumarase C-terminus SJPD1_1642 PF05681 Fumarate hydratase (Fumerase) SJPD1_1642 PF05683 Fumarase C-terminus SJPD1_1643 PF00939 Sodium:sulfate symporter transmembrane region SJPD1_1645 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1645 PF13359 DDE superfamily endonuclease SJPD1_1646 PF13359 DDE superfamily endonuclease SJPD1_1646 PF13613 Helix-turn-helix of DDE superfamily endonuclease SJPD1_1647 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1647 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1647 PF09308 LuxQ, periplasmic SJPD1_1647 PF00072 Response regulator receiver domain SJPD1_1648 PF00072 Response regulator receiver domain SJPD1_1648 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1651 PF00300 Histidine phosphatase superfamily (branch 1) SJPD1_1653 PF18644 Phage integrase SAM-like domain SJPD1_1653 PF00589 Phage integrase family SJPD1_1654 PF01702 Queuine tRNA-ribosyltransferase SJPD1_1656 PF01761 3-dehydroquinate synthase SJPD1_1658 PF00919 Uncharacterized protein family UPF0004 SJPD1_1658 PF04055 Radical SAM superfamily SJPD1_1659 PF01434 Peptidase family M41 SJPD1_1659 PF06480 FtsH Extracellular SJPD1_1659 PF00004 ATPase family associated with various cellular activities (AAA) SJPD1_1659 PF17862 AAA+ lid domain SJPD1_1663 PF00296 Luciferase-like monooxygenase SJPD1_1664 PF01479 S4 domain SJPD1_1664 PF00849 RNA pseudouridylate synthase SJPD1_1666 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SJPD1_1666 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SJPD1_1666 PF00205 Thiamine pyrophosphate enzyme, central domain SJPD1_1672 PF00440 Bacterial regulatory proteins, tetR family SJPD1_1672 PF08359 YsiA-like protein, C-terminal region SJPD1_1675 PF00873 AcrB/AcrD/AcrF family SJPD1_1679 PF00672 HAMP domain SJPD1_1679 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1679 PF17202 Single cache domain 3 SJPD1_1680 PF02915 Rubrerythrin SJPD1_1682 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SJPD1_1683 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SJPD1_1683 PF03900 Porphobilinogen deaminase, C-terminal domain SJPD1_1684 PF13462 Thioredoxin SJPD1_1684 PF06965 Na+/H+ antiporter 1 SJPD1_1685 PF04186 FxsA cytoplasmic membrane protein SJPD1_1686 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SJPD1_1686 PF04073 Aminoacyl-tRNA editing domain SJPD1_1686 PF03129 Anticodon binding domain SJPD1_1687 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SJPD1_1687 PF01488 Shikimate / quinate 5-dehydrogenase SJPD1_1687 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SJPD1_1688 PF00348 Polyprenyl synthetase SJPD1_1691 PF01053 Cys/Met metabolism PLP-dependent enzyme SJPD1_1692 PF02082 Transcriptional regulator SJPD1_1693 PF00291 Pyridoxal-phosphate dependent enzyme SJPD1_1694 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1695 PF10458 Valyl tRNA synthetase tRNA binding arm SJPD1_1695 PF00133 tRNA synthetases class I (I, L, M and V) SJPD1_1695 PF08264 Anticodon-binding domain of tRNA SJPD1_1696 PF00994 Probable molybdopterin binding domain SJPD1_1697 PF02558 Ketopantoate reductase PanE/ApbA SJPD1_1697 PF08546 Ketopantoate reductase PanE/ApbA C terminal SJPD1_1698 PF00815 Histidinol dehydrogenase SJPD1_1700 PF01116 Fructose-bisphosphate aldolase class-II SJPD1_1702 PF00730 HhH-GPD superfamily base excision DNA repair protein SJPD1_1702 PF10576 Iron-sulfur binding domain of endonuclease III SJPD1_1702 PF00633 Helix-hairpin-helix motif SJPD1_1704 PF01546 Peptidase family M20/M25/M40 SJPD1_1704 PF07687 Peptidase dimerisation domain SJPD1_1706 PF08003 Protein of unknown function (DUF1698) SJPD1_1708 PF00753 Metallo-beta-lactamase superfamily SJPD1_1709 PF02540 NAD synthase SJPD1_1710 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SJPD1_1711 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SJPD1_1712 PF00696 Amino acid kinase family SJPD1_1713 PF00291 Pyridoxal-phosphate dependent enzyme SJPD1_1714 PF02348 Cytidylyltransferase SJPD1_1716 PF02683 Cytochrome C biogenesis protein transmembrane region SJPD1_1716 PF11412 Disulphide bond corrector protein DsbC SJPD1_1717 PF03976 Polyphosphate kinase 2 (PPK2) SJPD1_1718 PF01966 HD domain SJPD1_1719 PF00012 Hsp70 protein SJPD1_1720 PF01025 GrpE SJPD1_1724 PF00312 Ribosomal protein S15 SJPD1_1725 PF02082 Transcriptional regulator SJPD1_1726 PF00771 FHIPEP family SJPD1_1729 PF13649 Methyltransferase domain SJPD1_1730 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1730 PF13185 GAF domain SJPD1_1731 PF06574 FAD synthetase SJPD1_1731 PF01687 Riboflavin kinase SJPD1_1732 PF01479 S4 domain SJPD1_1732 PF00163 Ribosomal protein S4/S9 N-terminal domain SJPD1_1733 PF12826 Helix-hairpin-helix motif SJPD1_1733 PF00533 BRCA1 C Terminus (BRCT) domain SJPD1_1733 PF01653 NAD-dependent DNA ligase adenylation domain SJPD1_1733 PF03120 NAD-dependent DNA ligase OB-fold domain SJPD1_1734 PF01925 Sulfite exporter TauE/SafE SJPD1_1736 PF00809 Pterin binding enzyme SJPD1_1737 PF12169 DNA polymerase III subunits gamma and tau domain III SJPD1_1739 PF13840 ACT domain SJPD1_1739 PF00696 Amino acid kinase family SJPD1_1739 PF01842 ACT domain SJPD1_1740 PF00293 NUDIX domain SJPD1_1741 PF06969 HemN C-terminal domain SJPD1_1741 PF04055 Radical SAM superfamily SJPD1_1742 PF00999 Sodium/hydrogen exchanger family SJPD1_1742 PF02254 TrkA-N domain SJPD1_1743 PF13411 MerR HTH family regulatory protein SJPD1_1744 PF00226 DnaJ domain SJPD1_1744 PF01556 DnaJ C terminal domain SJPD1_1744 PF00684 DnaJ central domain SJPD1_1745 PF17820 PDZ domain SJPD1_1745 PF13180 PDZ domain SJPD1_1746 PF00072 Response regulator receiver domain SJPD1_1746 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1747 PF00672 HAMP domain SJPD1_1747 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1750 PF00271 Helicase conserved C-terminal domain SJPD1_1750 PF07516 SecA Wing and Scaffold domain SJPD1_1750 PF01043 SecA preprotein cross-linking domain SJPD1_1750 PF07517 SecA DEAD-like domain SJPD1_1750 PF02810 SEC-C motif SJPD1_1751 PF03548 Outer membrane lipoprotein carrier protein LolA SJPD1_1752 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1752 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1752 PF00563 EAL domain SJPD1_1753 PF06965 Na+/H+ antiporter 1 SJPD1_1754 PF10396 GTP-binding protein TrmE N-terminus SJPD1_1754 PF01926 50S ribosome-binding GTPase SJPD1_1754 PF12631 MnmE helical domain SJPD1_1756 PF14849 YidC periplasmic domain SJPD1_1756 PF02096 60Kd inner membrane protein SJPD1_1757 PF01809 Putative membrane protein insertion efficiency factor SJPD1_1758 PF00468 Ribosomal protein L34 SJPD1_1759 PF00550 Phosphopantetheine attachment site SJPD1_1759 PF00668 Condensation domain SJPD1_1759 PF13193 AMP-binding enzyme C-terminal domain SJPD1_1759 PF00501 AMP-binding enzyme SJPD1_1760 PF13941 MutL protein SJPD1_1761 PF06368 Methylaspartate mutase E chain (MutE) SJPD1_1762 PF02310 B12 binding domain SJPD1_1763 PF03737 Aldolase/RraA SJPD1_1766 PF10431 C-terminal, D2-small domain, of ClpB protein SJPD1_1766 PF02861 Clp amino terminal domain, pathogenicity island component SJPD1_1766 PF17871 AAA lid domain SJPD1_1766 PF07724 AAA domain (Cdc48 subfamily) SJPD1_1766 PF00004 ATPase family associated with various cellular activities (AAA) SJPD1_1767 PF13180 PDZ domain SJPD1_1767 PF03572 Peptidase family S41 SJPD1_1768 PF01259 SAICAR synthetase SJPD1_1769 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SJPD1_1772 PF01553 Acyltransferase SJPD1_1773 PF00183 Hsp90 protein SJPD1_1775 PF03190 Protein of unknown function, DUF255 SJPD1_1776 PF00581 Rhodanese-like domain SJPD1_1777 PF00580 UvrD/REP helicase N-terminal domain SJPD1_1777 PF13361 UvrD-like helicase C-terminal domain SJPD1_1783 PF02689 Helicase SJPD1_1783 PF05970 PIF1-like helicase SJPD1_1786 PF08534 Redoxin SJPD1_1788 PF00403 Heavy-metal-associated domain SJPD1_1789 PF00403 Heavy-metal-associated domain SJPD1_1790 PF01966 HD domain SJPD1_1791 PF02646 RmuC family SJPD1_1793 PF01795 MraW methylase family SJPD1_1794 PF00202 Aminotransferase class-III SJPD1_1795 PF13145 PPIC-type PPIASE domain SJPD1_1796 PF02491 SHS2 domain inserted in FTSA SJPD1_1797 PF00091 Tubulin/FtsZ family, GTPase domain SJPD1_1797 PF12327 FtsZ family, C-terminal domain SJPD1_1799 PF05175 Methyltransferase small domain SJPD1_1799 PF02390 Putative methyltransferase SJPD1_1799 PF17827 PrmC N-terminal domain SJPD1_1800 PF01435 Peptidase family M48 SJPD1_1802 PF00672 HAMP domain SJPD1_1802 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1802 PF12729 Four helix bundle sensory module for signal transduction SJPD1_1804 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1804 PF00672 HAMP domain SJPD1_1806 PF01883 Iron-sulfur cluster assembly protein SJPD1_1809 PF02142 MGS-like domain SJPD1_1809 PF01808 AICARFT/IMPCHase bienzyme SJPD1_1810 PF02600 Disulfide bond formation protein DsbB SJPD1_1812 PF03061 Thioesterase superfamily SJPD1_1813 PF05099 Tellurite resistance protein TerB SJPD1_1813 PF00226 DnaJ domain SJPD1_1814 PF00155 Aminotransferase class I and II SJPD1_1817 PF00440 Bacterial regulatory proteins, tetR family SJPD1_1819 PF00529 HlyD membrane-fusion protein of T1SS SJPD1_1819 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_1820 PF07690 Major Facilitator Superfamily SJPD1_1821 PF00582 Universal stress protein family SJPD1_1824 PF00005 ABC transporter SJPD1_1825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_1826 PF09209 Tetracyclin repressor-like, C-terminal domain SJPD1_1826 PF00440 Bacterial regulatory proteins, tetR family SJPD1_1827 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1827 PF00072 Response regulator receiver domain SJPD1_1829 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SJPD1_1829 PF00586 AIR synthase related protein, N-terminal domain SJPD1_1829 PF02769 AIR synthase related protein, C-terminal domain SJPD1_1830 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1830 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1830 PF00563 EAL domain SJPD1_1831 PF02416 mttA/Hcf106 family SJPD1_1832 PF00902 Sec-independent protein translocase protein (TatC) SJPD1_1833 PF02547 Queuosine biosynthesis protein SJPD1_1836 PF00072 Response regulator receiver domain SJPD1_1837 PF00072 Response regulator receiver domain SJPD1_1837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1837 PF00672 HAMP domain SJPD1_1837 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1837 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SJPD1_1837 PF01627 Hpt domain SJPD1_1838 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SJPD1_1838 PF00753 Metallo-beta-lactamase superfamily SJPD1_1838 PF10996 Beta-Casp domain SJPD1_1839 PF00501 AMP-binding enzyme SJPD1_1841 PF00593 TonB dependent receptor SJPD1_1841 PF07715 TonB-dependent Receptor Plug Domain SJPD1_1842 PF02386 Cation transport protein SJPD1_1843 PF02254 TrkA-N domain SJPD1_1843 PF02080 TrkA-C domain SJPD1_1844 PF01641 SelR domain SJPD1_1845 PF01595 Cyclin M transmembrane N-terminal domain SJPD1_1845 PF00571 CBS domain SJPD1_1845 PF03471 Transporter associated domain SJPD1_1846 PF00300 Histidine phosphatase superfamily (branch 1) SJPD1_1846 PF13456 Reverse transcriptase-like SJPD1_1847 PF12804 MobA-like NTP transferase domain SJPD1_1848 PF13478 XdhC Rossmann domain SJPD1_1848 PF02625 XdhC and CoxI family SJPD1_1849 PF14535 AMP-binding enzyme C-terminal domain SJPD1_1849 PF00501 AMP-binding enzyme SJPD1_1850 PF04055 Radical SAM superfamily SJPD1_1850 PF13186 Iron-sulfur cluster-binding domain SJPD1_1852 PF08241 Methyltransferase domain SJPD1_1854 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SJPD1_1854 PF07992 Pyridine nucleotide-disulphide oxidoreductase SJPD1_1854 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SJPD1_1855 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SJPD1_1855 PF01799 [2Fe-2S] binding domain SJPD1_1855 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SJPD1_1855 PF00111 2Fe-2S iron-sulfur cluster binding domain SJPD1_1856 PF00072 Response regulator receiver domain SJPD1_1856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1856 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1856 PF00497 Bacterial extracellular solute-binding proteins, family 3 SJPD1_1857 PF00072 Response regulator receiver domain SJPD1_1857 PF01627 Hpt domain SJPD1_1857 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1858 PF14437 MafB19-like deaminase SJPD1_1859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1859 PF00672 HAMP domain SJPD1_1859 PF02743 Cache domain SJPD1_1863 PF02146 Sir2 family SJPD1_1865 PF02310 B12 binding domain SJPD1_1865 PF02607 B12 binding domain SJPD1_1865 PF02574 Homocysteine S-methyltransferase SJPD1_1865 PF00809 Pterin binding enzyme SJPD1_1865 PF02965 Vitamin B12 dependent methionine synthase, activation domain SJPD1_1866 PF13458 Periplasmic binding protein SJPD1_1867 PF13458 Periplasmic binding protein SJPD1_1868 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1868 PF00672 HAMP domain SJPD1_1868 PF02743 Cache domain SJPD1_1869 PF01810 LysE type translocator SJPD1_1870 PF00892 EamA-like transporter family SJPD1_1871 PF00672 HAMP domain SJPD1_1871 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1871 PF02743 Cache domain SJPD1_1872 PF00884 Sulfatase SJPD1_1873 PF00909 Ammonium Transporter Family SJPD1_1874 PF00543 Nitrogen regulatory protein P-II SJPD1_1877 PF00072 Response regulator receiver domain SJPD1_1877 PF01966 HD domain SJPD1_1878 PF02092 Glycyl-tRNA synthetase beta subunit SJPD1_1881 PF00484 Carbonic anhydrase SJPD1_1882 PF06865 Pyrimidine/purine nucleoside phosphorylase SJPD1_1883 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1883 PF00563 EAL domain SJPD1_1883 PF03707 Bacterial signalling protein N terminal repeat SJPD1_1886 PF00588 SpoU rRNA Methylase family SJPD1_1887 PF01842 ACT domain SJPD1_1887 PF00551 Formyl transferase SJPD1_1888 PF12627 Probable RNA and SrmB- binding site of polymerase A SJPD1_1888 PF01743 Poly A polymerase head domain SJPD1_1888 PF13735 tRNA nucleotidyltransferase domain 2 putative SJPD1_1891 PF00180 Isocitrate/isopropylmalate dehydrogenase SJPD1_1892 PF00694 Aconitase C-terminal domain SJPD1_1893 PF00005 ABC transporter SJPD1_1894 PF00873 AcrB/AcrD/AcrF family SJPD1_1897 PF02040 Arsenical pump membrane protein SJPD1_1899 PF03372 Endonuclease/Exonuclease/phosphatase family SJPD1_1902 PF09297 NADH pyrophosphatase zinc ribbon domain SJPD1_1902 PF00293 NUDIX domain SJPD1_1902 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SJPD1_1903 PF00174 Oxidoreductase molybdopterin binding domain SJPD1_1904 PF01794 Ferric reductase like transmembrane component SJPD1_1909 PF02743 Cache domain SJPD1_1909 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_1909 PF00672 HAMP domain SJPD1_1911 PF03358 NADPH-dependent FMN reductase SJPD1_1912 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) SJPD1_1913 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_1913 PF08448 PAS fold SJPD1_1915 PF09962 Uncharacterized conserved protein (DUF2196) SJPD1_1916 PF00270 DEAD/DEAH box helicase SJPD1_1916 PF00271 Helicase conserved C-terminal domain SJPD1_1916 PF09382 RQC domain SJPD1_1916 PF16124 RecQ zinc-binding SJPD1_1916 PF00570 HRDC domain SJPD1_1919 PF00270 DEAD/DEAH box helicase SJPD1_1919 PF00271 Helicase conserved C-terminal domain SJPD1_1922 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_1922 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_1922 PF08521 Two-component sensor kinase N-terminal SJPD1_1923 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1923 PF00072 Response regulator receiver domain SJPD1_1929 PF00501 AMP-binding enzyme SJPD1_1929 PF13193 AMP-binding enzyme C-terminal domain SJPD1_1929 PF16177 Acetyl-coenzyme A synthetase N-terminus SJPD1_1931 PF00285 Citrate synthase, C-terminal domain SJPD1_1932 PF03972 MmgE/PrpD family SJPD1_1934 PF03831 PhnA domain SJPD1_1934 PF08274 PhnA Zinc-Ribbon SJPD1_1936 PF03591 AzlC protein SJPD1_1938 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SJPD1_1938 PF00460 Flagella basal body rod protein SJPD1_1939 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SJPD1_1939 PF00460 Flagella basal body rod protein SJPD1_1940 PF04545 Sigma-70, region 4 SJPD1_1940 PF04542 Sigma-70 region 2 SJPD1_1940 PF00140 Sigma-70 factor, region 1.2 SJPD1_1940 PF04539 Sigma-70 region 3 SJPD1_1942 PF01638 HxlR-like helix-turn-helix SJPD1_1945 PF03824 High-affinity nickel-transport protein SJPD1_1946 PF00005 ABC transporter SJPD1_1947 PF00950 ABC 3 transport family SJPD1_1948 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SJPD1_1948 PF01297 Zinc-uptake complex component A periplasmic SJPD1_1950 PF13193 AMP-binding enzyme C-terminal domain SJPD1_1950 PF00501 AMP-binding enzyme SJPD1_1950 PF16177 Acetyl-coenzyme A synthetase N-terminus SJPD1_1951 PF00474 Sodium:solute symporter family SJPD1_1952 PF04341 Protein of unknown function, DUF485 SJPD1_1953 PF00072 Response regulator receiver domain SJPD1_1953 PF00486 Transcriptional regulatory protein, C terminal SJPD1_1955 PF04371 Porphyromonas-type peptidyl-arginine deiminase SJPD1_1956 PF01545 Cation efflux family SJPD1_1956 PF16916 Dimerisation domain of Zinc Transporter SJPD1_1957 PF02421 Ferrous iron transport protein B SJPD1_1957 PF07670 Nucleoside recognition SJPD1_1957 PF07664 Ferrous iron transport protein B C terminus SJPD1_1958 PF04023 FeoA domain SJPD1_1959 PF00795 Carbon-nitrogen hydrolase SJPD1_1962 PF01618 MotA/TolQ/ExbB proton channel family SJPD1_1963 PF02472 Biopolymer transport protein ExbD/TolR SJPD1_1967 PF07715 TonB-dependent Receptor Plug Domain SJPD1_1967 PF00593 TonB dependent receptor SJPD1_1967 PF07660 Secretin and TonB N terminus short domain SJPD1_1972 PF03459 TOBE domain SJPD1_1973 PF00293 NUDIX domain SJPD1_1974 PF01544 CorA-like Mg2+ transporter protein SJPD1_1975 PF01551 Peptidase family M23 SJPD1_1975 PF04225 Opacity-associated protein A LysM-like domain SJPD1_1976 PF15436 Plasminogen-binding protein pgbA N-terminal SJPD1_1976 PF15437 Plasminogen-binding protein pgbA C-terminal SJPD1_1977 PF01565 FAD binding domain SJPD1_1977 PF02913 FAD linked oxidases, C-terminal domain SJPD1_1978 PF03631 Virulence factor BrkB SJPD1_1980 PF00772 DnaB-like helicase N terminal domain SJPD1_1980 PF03796 DnaB-like helicase C terminal domain SJPD1_1981 PF04551 GcpE protein SJPD1_1982 PF00271 Helicase conserved C-terminal domain SJPD1_1982 PF18074 Primosomal protein N C-terminal domain SJPD1_1982 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SJPD1_1982 PF00270 DEAD/DEAH box helicase SJPD1_1983 PF07963 Prokaryotic N-terminal methylation motif SJPD1_1983 PF00114 Pilin (bacterial filament) SJPD1_1984 PF07963 Prokaryotic N-terminal methylation motif SJPD1_1984 PF00114 Pilin (bacterial filament) SJPD1_1987 PF00271 Helicase conserved C-terminal domain SJPD1_1987 PF17757 UvrB interaction domain SJPD1_1987 PF12344 Ultra-violet resistance protein B SJPD1_1987 PF02151 UvrB/uvrC motif SJPD1_1987 PF04851 Type III restriction enzyme, res subunit SJPD1_1989 PF02503 Polyphosphate kinase middle domain SJPD1_1989 PF13090 Polyphosphate kinase C-terminal domain 2 SJPD1_1989 PF17941 Polyphosphate kinase C-terminal domain 1 SJPD1_1989 PF13089 Polyphosphate kinase N-terminal domain SJPD1_1990 PF00132 Bacterial transferase hexapeptide (six repeats) SJPD1_1991 PF00929 Exonuclease SJPD1_1991 PF07733 Bacterial DNA polymerase III alpha NTPase domain SJPD1_1991 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SJPD1_1991 PF14579 Helix-hairpin-helix motif SJPD1_1991 PF02811 PHP domain SJPD1_1992 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SJPD1_1993 PF00834 Ribulose-phosphate 3 epimerase family SJPD1_1994 PF00830 Ribosomal L28 family SJPD1_1995 PF01960 ArgJ family SJPD1_1998 PF13277 YmdB-like protein SJPD1_1999 PF17757 UvrB interaction domain SJPD1_1999 PF02559 CarD-like/TRCF domain SJPD1_1999 PF00271 Helicase conserved C-terminal domain SJPD1_1999 PF03461 TRCF domain SJPD1_1999 PF00270 DEAD/DEAH box helicase SJPD1_2001 PF01551 Peptidase family M23 SJPD1_2001 PF04225 Opacity-associated protein A LysM-like domain SJPD1_2002 PF08245 Mur ligase middle domain SJPD1_2003 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2003 PF07694 5TMR of 5TMR-LYT SJPD1_2005 PF09334 tRNA synthetases class I (M) SJPD1_2005 PF13603 Leucyl-tRNA synthetase, Domain 2 SJPD1_2005 PF00133 tRNA synthetases class I (I, L, M and V) SJPD1_2006 PF07549 SecD/SecF GG Motif SJPD1_2006 PF02355 Protein export membrane protein SJPD1_2007 PF02355 Protein export membrane protein SJPD1_2008 PF02699 Preprotein translocase subunit SJPD1_2010 PF02773 S-adenosylmethionine synthetase, C-terminal domain SJPD1_2010 PF00438 S-adenosylmethionine synthetase, N-terminal domain SJPD1_2010 PF02772 S-adenosylmethionine synthetase, central domain SJPD1_2012 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SJPD1_2013 PF00004 ATPase family associated with various cellular activities (AAA) SJPD1_2013 PF10431 C-terminal, D2-small domain, of ClpB protein SJPD1_2013 PF07724 AAA domain (Cdc48 subfamily) SJPD1_2013 PF17871 AAA lid domain SJPD1_2013 PF02861 Clp amino terminal domain, pathogenicity island component SJPD1_2014 PF02617 ATP-dependent Clp protease adaptor protein ClpS SJPD1_2016 PF01668 SmpB protein SJPD1_2017 PF00288 GHMP kinases N terminal domain SJPD1_2018 PF02599 Global regulator protein family SJPD1_2019 PF01509 TruB family pseudouridylate synthase (N terminal domain) SJPD1_2020 PF13361 UvrD-like helicase C-terminal domain SJPD1_2020 PF00580 UvrD/REP helicase N-terminal domain SJPD1_2021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SJPD1_2021 PF03466 LysR substrate binding domain SJPD1_2025 PF00425 chorismate binding enzyme SJPD1_2026 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SJPD1_2026 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SJPD1_2031 PF00392 Bacterial regulatory proteins, gntR family SJPD1_2031 PF00155 Aminotransferase class I and II SJPD1_2033 PF01245 Ribosomal protein L19 SJPD1_2034 PF01746 tRNA (Guanine-1)-methyltransferase SJPD1_2035 PF01782 RimM N-terminal domain SJPD1_2037 PF00886 Ribosomal protein S16 SJPD1_2038 PF02881 SRP54-type protein, helical bundle domain SJPD1_2038 PF02978 Signal peptide binding domain SJPD1_2038 PF00448 SRP54-type protein, GTPase domain SJPD1_2039 PF00849 RNA pseudouridylate synthase SJPD1_2040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SJPD1_2040 PF00534 Glycosyl transferases group 1 SJPD1_2042 PF01784 NIF3 (NGG1p interacting factor 3) SJPD1_2043 PF02091 Glycyl-tRNA synthetase alpha subunit SJPD1_2045 PF00731 AIR carboxylase SJPD1_2048 PF02811 PHP domain SJPD1_2049 PF00120 Glutamine synthetase, catalytic domain SJPD1_2049 PF03951 Glutamine synthetase, beta-Grasp domain SJPD1_2050 PF00905 Penicillin binding protein transpeptidase domain SJPD1_2050 PF00912 Transglycosylase SJPD1_2051 PF00905 Penicillin binding protein transpeptidase domain SJPD1_2051 PF17092 Penicillin-binding protein OB-like domain SJPD1_2051 PF00912 Transglycosylase SJPD1_2052 PF00005 ABC transporter SJPD1_2052 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SJPD1_2053 PF00155 Aminotransferase class I and II SJPD1_2054 PF02545 Maf-like protein SJPD1_2056 PF02272 DHHA1 domain SJPD1_2056 PF01411 tRNA synthetases class II (A) SJPD1_2056 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SJPD1_2062 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SJPD1_2063 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SJPD1_2063 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SJPD1_2064 PF00762 Ferrochelatase SJPD1_2065 PF00905 Penicillin binding protein transpeptidase domain SJPD1_2065 PF03717 Penicillin-binding Protein dimerisation domain SJPD1_2066 PF02049 Flagellar hook-basal body complex protein FliE SJPD1_2067 PF00460 Flagella basal body rod protein SJPD1_2067 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SJPD1_2068 PF00460 Flagella basal body rod protein SJPD1_2069 PF01098 Cell cycle protein SJPD1_2070 PF04101 Glycosyltransferase family 28 C-terminal domain SJPD1_2070 PF03033 Glycosyltransferase family 28 N-terminal domain SJPD1_2073 PF07670 Nucleoside recognition SJPD1_2075 PF00892 EamA-like transporter family SJPD1_2083 PF00117 Glutamine amidotransferase class-I SJPD1_2085 PF00248 Aldo/keto reductase family SJPD1_2087 PF12146 Serine aminopeptidase, S33 SJPD1_2089 PF00248 Aldo/keto reductase family SJPD1_2093 PF07690 Major Facilitator Superfamily SJPD1_2094 PF06719 AraC-type transcriptional regulator N-terminus SJPD1_2094 PF12833 Helix-turn-helix domain SJPD1_2098 PF00465 Iron-containing alcohol dehydrogenase SJPD1_2099 PF12706 Beta-lactamase superfamily domain SJPD1_2101 PF00999 Sodium/hydrogen exchanger family SJPD1_2103 PF00106 short chain dehydrogenase SJPD1_2105 PF00107 Zinc-binding dehydrogenase SJPD1_2105 PF08240 Alcohol dehydrogenase GroES-like domain SJPD1_2106 PF00248 Aldo/keto reductase family SJPD1_2107 PF02321 Outer membrane efflux protein SJPD1_2108 PF00873 AcrB/AcrD/AcrF family SJPD1_2109 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_2111 PF07690 Major Facilitator Superfamily SJPD1_2112 PF01553 Acyltransferase SJPD1_2112 PF00501 AMP-binding enzyme SJPD1_2113 PF01022 Bacterial regulatory protein, arsR family SJPD1_2118 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SJPD1_2119 PF04223 Citrate lyase, alpha subunit (CitF) SJPD1_2120 PF03328 HpcH/HpaI aldolase/citrate lyase family SJPD1_2121 PF06857 Malonate decarboxylase delta subunit (MdcD) SJPD1_2122 PF00583 Acetyltransferase (GNAT) family SJPD1_2122 PF08218 Citrate lyase ligase C-terminal domain SJPD1_2124 PF07690 Major Facilitator Superfamily SJPD1_2126 PF00860 Permease family SJPD1_2127 PF04055 Radical SAM superfamily SJPD1_2128 PF00291 Pyridoxal-phosphate dependent enzyme SJPD1_2130 PF01842 ACT domain SJPD1_2130 PF01909 Nucleotidyltransferase domain SJPD1_2130 PF01966 HD domain SJPD1_2130 PF08335 GlnD PII-uridylyltransferase SJPD1_2131 PF01380 SIS domain SJPD1_2132 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2136 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2136 PF13426 PAS domain SJPD1_2136 PF00563 EAL domain SJPD1_2138 PF00027 Cyclic nucleotide-binding domain SJPD1_2138 PF00520 Ion transport protein SJPD1_2142 PF00005 ABC transporter SJPD1_2142 PF12848 ABC transporter SJPD1_2143 PF13247 4Fe-4S dicluster domain SJPD1_2144 PF00361 Proton-conducting membrane transporter SJPD1_2145 PF00146 NADH dehydrogenase SJPD1_2146 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SJPD1_2147 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SJPD1_2147 PF00361 Proton-conducting membrane transporter SJPD1_2148 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SJPD1_2148 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SJPD1_2148 PF00374 Nickel-dependent hydrogenase SJPD1_2150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SJPD1_2157 PF00899 ThiF family SJPD1_2158 PF00072 Response regulator receiver domain SJPD1_2158 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2160 PF14602 Hexapeptide repeat of succinyl-transferase SJPD1_2160 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle SJPD1_2161 PF10609 NUBPL iron-transfer P-loop NTPase SJPD1_2161 PF01883 Iron-sulfur cluster assembly protein SJPD1_2162 PF02542 YgbB family SJPD1_2162 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SJPD1_2164 PF01747 ATP-sulfurylase SJPD1_2164 PF14306 PUA-like domain SJPD1_2166 PF04264 YceI-like domain SJPD1_2167 PF09186 Domain of unknown function (DUF1949) SJPD1_2167 PF01205 Uncharacterized protein family UPF0029 SJPD1_2169 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2171 PF00005 ABC transporter SJPD1_2172 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2175 PF03459 TOBE domain SJPD1_2175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SJPD1_2176 PF00768 D-alanyl-D-alanine carboxypeptidase SJPD1_2176 PF07943 Penicillin-binding protein 5, C-terminal domain SJPD1_2177 PF14748 Pyrroline-5-carboxylate reductase dimerisation SJPD1_2177 PF03807 NADP oxidoreductase coenzyme F420-dependent SJPD1_2178 PF02687 FtsX-like permease family SJPD1_2178 PF12704 MacB-like periplasmic core domain SJPD1_2178 PF00005 ABC transporter SJPD1_2179 PF12704 MacB-like periplasmic core domain SJPD1_2179 PF00005 ABC transporter SJPD1_2179 PF02687 FtsX-like permease family SJPD1_2183 PF05552 Conserved TM helix SJPD1_2183 PF00924 Mechanosensitive ion channel SJPD1_2184 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2184 PF03707 Bacterial signalling protein N terminal repeat SJPD1_2184 PF00563 EAL domain SJPD1_2203 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SJPD1_2204 PF01029 NusB family SJPD1_2205 PF00885 6,7-dimethyl-8-ribityllumazine synthase SJPD1_2207 PF00793 DAHP synthetase I family SJPD1_2208 PF00892 EamA-like transporter family SJPD1_2209 PF00924 Mechanosensitive ion channel SJPD1_2210 PF01926 50S ribosome-binding GTPase SJPD1_2210 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SJPD1_2211 PF01202 Shikimate kinase SJPD1_2212 PF00579 tRNA synthetases class I (W and Y) SJPD1_2213 PF02403 Seryl-tRNA synthetase N-terminal domain SJPD1_2213 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SJPD1_2215 PF08502 LeuA allosteric (dimerisation) domain SJPD1_2215 PF00682 HMGL-like SJPD1_2216 PF01066 CDP-alcohol phosphatidyltransferase SJPD1_2218 PF01434 Peptidase family M41 SJPD1_2218 PF00004 ATPase family associated with various cellular activities (AAA) SJPD1_2218 PF17862 AAA+ lid domain SJPD1_2220 PF00072 Response regulator receiver domain SJPD1_2221 PF00977 Histidine biosynthesis protein SJPD1_2222 PF00117 Glutamine amidotransferase class-I SJPD1_2224 PF02516 Oligosaccharyl transferase STT3 subunit SJPD1_2224 PF18527 STT3/PglB C-terminal beta-barrel domain SJPD1_2225 PF00953 Glycosyl transferase family 4 SJPD1_2226 PF00535 Glycosyl transferase family 2 SJPD1_2227 PF00535 Glycosyl transferase family 2 SJPD1_2228 PF00535 Glycosyl transferase family 2 SJPD1_2229 PF00535 Glycosyl transferase family 2 SJPD1_2231 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SJPD1_2233 PF00205 Thiamine pyrophosphate enzyme, central domain SJPD1_2233 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SJPD1_2233 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SJPD1_2234 PF16363 GDP-mannose 4,6 dehydratase SJPD1_2235 PF00483 Nucleotidyl transferase SJPD1_2236 PF04321 RmlD substrate binding domain SJPD1_2237 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SJPD1_2238 PF14743 DNA ligase OB-like domain SJPD1_2238 PF01068 ATP dependent DNA ligase domain SJPD1_2239 PF16363 GDP-mannose 4,6 dehydratase SJPD1_2240 PF00483 Nucleotidyl transferase SJPD1_2241 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SJPD1_2241 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SJPD1_2241 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SJPD1_2241 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SJPD1_2243 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SJPD1_2246 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SJPD1_2247 PF00535 Glycosyl transferase family 2 SJPD1_2248 PF00535 Glycosyl transferase family 2 SJPD1_2251 PF13580 SIS domain SJPD1_2252 PF00294 pfkB family carbohydrate kinase SJPD1_2252 PF01467 Cytidylyltransferase-like SJPD1_2253 PF01370 NAD dependent epimerase/dehydratase family SJPD1_2254 PF08645 Polynucleotide kinase 3 phosphatase SJPD1_2258 PF00403 Heavy-metal-associated domain SJPD1_2259 PF08448 PAS fold SJPD1_2259 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2259 PF00563 EAL domain SJPD1_2260 PF00892 EamA-like transporter family SJPD1_2262 PF00072 Response regulator receiver domain SJPD1_2262 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2263 PF08534 Redoxin SJPD1_2266 PF00677 Lumazine binding domain SJPD1_2267 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2267 PF00672 HAMP domain SJPD1_2267 PF02743 Cache domain SJPD1_2268 PF02626 Carboxyltransferase domain, subdomain A and B SJPD1_2270 PF03746 LamB/YcsF family SJPD1_2271 PF01134 Glucose inhibited division protein A SJPD1_2271 PF13932 GidA associated domain SJPD1_2272 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SJPD1_2272 PF00355 Rieske [2Fe-2S] domain SJPD1_2273 PF00032 Cytochrome b(C-terminal)/b6/petD SJPD1_2273 PF00033 Cytochrome b/b6/petB SJPD1_2274 PF02167 Cytochrome C1 family SJPD1_2276 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SJPD1_2277 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SJPD1_2278 PF00109 Beta-ketoacyl synthase, N-terminal domain SJPD1_2278 PF02801 Beta-ketoacyl synthase, C-terminal domain SJPD1_2279 PF00550 Phosphopantetheine attachment site SJPD1_2281 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SJPD1_2281 PF01676 Metalloenzyme superfamily SJPD1_2282 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SJPD1_2282 PF00953 Glycosyl transferase family 4 SJPD1_2283 PF08245 Mur ligase middle domain SJPD1_2294 PF14659 Phage integrase, N-terminal SAM-like domain SJPD1_2294 PF00589 Phage integrase family SJPD1_2295 PF01568 Molydopterin dinucleotide binding domain SJPD1_2295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_2295 PF00384 Molybdopterin oxidoreductase SJPD1_2297 PF13247 4Fe-4S dicluster domain SJPD1_2298 PF00989 PAS fold SJPD1_2298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2298 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2298 PF08447 PAS fold SJPD1_2299 PF00072 Response regulator receiver domain SJPD1_2299 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2302 PF09335 SNARE associated Golgi protein SJPD1_2303 PF00563 EAL domain SJPD1_2303 PF12792 CSS motif domain associated with EAL SJPD1_2307 PF03649 Uncharacterised protein family (UPF0014) SJPD1_2308 PF02785 Biotin carboxylase C-terminal domain SJPD1_2308 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SJPD1_2308 PF00289 Biotin carboxylase, N-terminal domain SJPD1_2311 PF00270 DEAD/DEAH box helicase SJPD1_2311 PF00271 Helicase conserved C-terminal domain SJPD1_2312 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SJPD1_2313 PF00248 Aldo/keto reductase family SJPD1_2314 PF07690 Major Facilitator Superfamily SJPD1_2315 PF12833 Helix-turn-helix domain SJPD1_2315 PF06719 AraC-type transcriptional regulator N-terminus SJPD1_2316 PF12706 Beta-lactamase superfamily domain SJPD1_2318 PF12849 PBP superfamily domain SJPD1_2319 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2320 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2321 PF00005 ABC transporter SJPD1_2322 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2322 PF00672 HAMP domain SJPD1_2322 PF17202 Single cache domain 3 SJPD1_2323 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SJPD1_2324 PF00672 HAMP domain SJPD1_2324 PF02743 Cache domain SJPD1_2324 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2326 PF01895 PhoU domain SJPD1_2327 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2327 PF00072 Response regulator receiver domain SJPD1_2328 PF11808 Phosphate regulon sensor protein PhoR SJPD1_2328 PF00989 PAS fold SJPD1_2328 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2329 PF03061 Thioesterase superfamily SJPD1_2336 PF01638 HxlR-like helix-turn-helix SJPD1_2337 PF02525 Flavodoxin-like fold SJPD1_2338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2338 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2339 PF06508 Queuosine biosynthesis protein QueC SJPD1_2340 PF04055 Radical SAM superfamily SJPD1_2347 PF02562 PhoH-like protein SJPD1_2348 PF00999 Sodium/hydrogen exchanger family SJPD1_2350 PF07690 Major Facilitator Superfamily SJPD1_2351 PF07690 Major Facilitator Superfamily SJPD1_2354 PF01243 Pyridoxamine 5'-phosphate oxidase SJPD1_2355 PF00375 Sodium:dicarboxylate symporter family SJPD1_2356 PF02664 S-Ribosylhomocysteinase (LuxS) SJPD1_2361 PF10371 Domain of unknown function SJPD1_2361 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SJPD1_2361 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SJPD1_2361 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SJPD1_2361 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SJPD1_2362 PF13419 Haloacid dehalogenase-like hydrolase SJPD1_2363 PF00939 Sodium:sulfate symporter transmembrane region SJPD1_2365 PF00924 Mechanosensitive ion channel SJPD1_2365 PF05552 Conserved TM helix SJPD1_2366 PF00691 OmpA family SJPD1_2366 PF05736 OprF membrane domain SJPD1_2367 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SJPD1_2368 PF01161 Phosphatidylethanolamine-binding protein SJPD1_2369 PF06719 AraC-type transcriptional regulator N-terminus SJPD1_2369 PF12833 Helix-turn-helix domain SJPD1_2370 PF13302 Acetyltransferase (GNAT) domain SJPD1_2370 PF03352 Methyladenine glycosylase SJPD1_2370 PF00117 Glutamine amidotransferase class-I SJPD1_2370 PF00958 GMP synthase C terminal domain SJPD1_2370 PF13673 Acetyltransferase (GNAT) domain SJPD1_2374 PF00465 Iron-containing alcohol dehydrogenase SJPD1_2376 PF00654 Voltage gated chloride channel SJPD1_2377 PF02222 ATP-grasp domain SJPD1_2379 PF03091 CutA1 divalent ion tolerance protein SJPD1_2380 PF00380 Ribosomal protein S9/S16 SJPD1_2381 PF00572 Ribosomal protein L13 SJPD1_2382 PF00580 UvrD/REP helicase N-terminal domain SJPD1_2382 PF12705 PD-(D/E)XK nuclease superfamily SJPD1_2382 PF13361 UvrD-like helicase C-terminal domain SJPD1_2388 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SJPD1_2388 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SJPD1_2391 PF00115 Cytochrome C and Quinol oxidase polypeptide I SJPD1_2392 PF00072 Response regulator receiver domain SJPD1_2392 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2393 PF00989 PAS fold SJPD1_2393 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2395 PF00117 Glutamine amidotransferase class-I SJPD1_2395 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SJPD1_2399 PF00709 Adenylosuccinate synthetase SJPD1_2400 PF13393 Histidyl-tRNA synthetase SJPD1_2401 PF00266 Aminotransferase class-V SJPD1_2402 PF00672 HAMP domain SJPD1_2402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2402 PF17200 Single Cache domain 2 SJPD1_2403 PF00672 HAMP domain SJPD1_2403 PF17200 Single Cache domain 2 SJPD1_2403 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2404 PF13419 Haloacid dehalogenase-like hydrolase SJPD1_2405 PF00456 Transketolase, thiamine diphosphate binding domain SJPD1_2405 PF02780 Transketolase, C-terminal domain SJPD1_2405 PF02779 Transketolase, pyrimidine binding domain SJPD1_2406 PF00348 Polyprenyl synthetase SJPD1_2407 PF00595 PDZ domain SJPD1_2408 PF02575 YbaB/EbfC DNA-binding family SJPD1_2409 PF02261 Aspartate decarboxylase SJPD1_2410 PF02875 Mur ligase family, glutamate ligase domain SJPD1_2410 PF08245 Mur ligase middle domain SJPD1_2413 PF01196 Ribosomal protein L17 SJPD1_2414 PF01000 RNA polymerase Rpb3/RpoA insert domain SJPD1_2414 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SJPD1_2414 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SJPD1_2415 PF01479 S4 domain SJPD1_2415 PF00163 Ribosomal protein S4/S9 N-terminal domain SJPD1_2416 PF00411 Ribosomal protein S11 SJPD1_2417 PF00416 Ribosomal protein S13/S18 SJPD1_2418 PF01176 Translation initiation factor 1A / IF-1 SJPD1_2419 PF00557 Metallopeptidase family M24 SJPD1_2420 PF00344 SecY translocase SJPD1_2421 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SJPD1_2422 PF03719 Ribosomal protein S5, C-terminal domain SJPD1_2422 PF00333 Ribosomal protein S5, N-terminal domain SJPD1_2423 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SJPD1_2424 PF00347 Ribosomal protein L6 SJPD1_2425 PF00410 Ribosomal protein S8 SJPD1_2426 PF00281 Ribosomal protein L5 SJPD1_2426 PF00673 ribosomal L5P family C-terminus SJPD1_2427 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SJPD1_2427 PF00467 KOW motif SJPD1_2428 PF00238 Ribosomal protein L14p/L23e SJPD1_2429 PF00366 Ribosomal protein S17 SJPD1_2430 PF00831 Ribosomal L29 protein SJPD1_2431 PF00252 Ribosomal protein L16p/L10e SJPD1_2432 PF00189 Ribosomal protein S3, C-terminal domain SJPD1_2432 PF07650 KH domain SJPD1_2433 PF00237 Ribosomal protein L22p/L17e SJPD1_2434 PF00203 Ribosomal protein S19 SJPD1_2435 PF00181 Ribosomal Proteins L2, RNA binding domain SJPD1_2435 PF03947 Ribosomal Proteins L2, C-terminal domain SJPD1_2436 PF00276 Ribosomal protein L23 SJPD1_2437 PF00573 Ribosomal protein L4/L1 family SJPD1_2438 PF00297 Ribosomal protein L3 SJPD1_2439 PF00338 Ribosomal protein S10p/S20e SJPD1_2442 PF01351 Ribonuclease HII SJPD1_2444 PF07670 Nucleoside recognition SJPD1_2444 PF02421 Ferrous iron transport protein B SJPD1_2444 PF07664 Ferrous iron transport protein B C terminus SJPD1_2445 PF01264 Chorismate synthase SJPD1_2446 PF14622 Ribonuclease-III-like SJPD1_2446 PF00035 Double-stranded RNA binding motif SJPD1_2447 PF00075 RNase H SJPD1_2449 PF08275 DNA primase catalytic core, N-terminal domain SJPD1_2449 PF01807 CHC2 zinc finger SJPD1_2449 PF13662 Toprim domain SJPD1_2449 PF16730 DnaG-primase C-terminal, helicase-binding domain SJPD1_2450 PF00764 Arginosuccinate synthase SJPD1_2451 PF00072 Response regulator receiver domain SJPD1_2453 PF03707 Bacterial signalling protein N terminal repeat SJPD1_2453 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2453 PF00563 EAL domain SJPD1_2454 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2454 PF00072 Response regulator receiver domain SJPD1_2455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2455 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2456 PF00072 Response regulator receiver domain SJPD1_2456 PF01339 CheB methylesterase SJPD1_2457 PF03975 CheD chemotactic sensory transduction SJPD1_2458 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2458 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2458 PF00672 HAMP domain SJPD1_2458 PF00989 PAS fold SJPD1_2459 PF01739 CheR methyltransferase, SAM binding domain SJPD1_2459 PF03705 CheR methyltransferase, all-alpha domain SJPD1_2460 PF07194 P2 response regulator binding domain SJPD1_2460 PF01627 Hpt domain SJPD1_2460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2460 PF02895 Signal transducing histidine kinase, homodimeric domain SJPD1_2460 PF01584 CheW-like domain SJPD1_2462 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2462 PF00672 HAMP domain SJPD1_2462 PF02203 Tar ligand binding domain homologue SJPD1_2463 PF01584 CheW-like domain SJPD1_2465 PF00226 DnaJ domain SJPD1_2465 PF01556 DnaJ C terminal domain SJPD1_2470 PF03824 High-affinity nickel-transport protein SJPD1_2471 PF03824 High-affinity nickel-transport protein SJPD1_2473 PF01810 LysE type translocator SJPD1_2474 PF01370 NAD dependent epimerase/dehydratase family SJPD1_2474 PF08338 Domain of unknown function (DUF1731) SJPD1_2477 PF00005 ABC transporter SJPD1_2477 PF12704 MacB-like periplasmic core domain SJPD1_2477 PF02687 FtsX-like permease family SJPD1_2480 PF01810 LysE type translocator SJPD1_2482 PF03707 Bacterial signalling protein N terminal repeat SJPD1_2482 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2482 PF00563 EAL domain SJPD1_2483 PF00892 EamA-like transporter family SJPD1_2484 PF00072 Response regulator receiver domain SJPD1_2484 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2485 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2485 PF00672 HAMP domain SJPD1_2486 PF08019 Phosphoethanolamine transferase EptA/EptB SJPD1_2486 PF00884 Sulfatase SJPD1_2488 PF12792 CSS motif domain associated with EAL SJPD1_2488 PF00563 EAL domain SJPD1_2491 PF02673 Bacitracin resistance protein BacA SJPD1_2492 PF01613 Flavin reductase like domain SJPD1_2493 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SJPD1_2494 PF01869 BadF/BadG/BcrA/BcrD ATPase family SJPD1_2498 PF00206 Lyase SJPD1_2498 PF10415 Fumarase C C-terminus SJPD1_2499 PF10415 Fumarase C C-terminus SJPD1_2499 PF00206 Lyase SJPD1_2500 PF03605 Anaerobic c4-dicarboxylate membrane transporter SJPD1_2501 PF17763 Glutaminase/Asparaginase C-terminal domain SJPD1_2501 PF00710 Asparaginase, N-terminal SJPD1_2502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2502 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2502 PF00989 PAS fold SJPD1_2503 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2503 PF00072 Response regulator receiver domain SJPD1_2504 PF02492 CobW/HypB/UreG, nucleotide-binding domain SJPD1_2505 PF01730 UreF SJPD1_2506 PF05194 UreE urease accessory protein, C-terminal domain SJPD1_2507 PF01979 Amidohydrolase family SJPD1_2507 PF00449 Urease alpha-subunit, N-terminal domain SJPD1_2508 PF00699 Urease beta subunit SJPD1_2508 PF00547 Urease, gamma subunit SJPD1_2509 PF01774 UreD urease accessory protein SJPD1_2510 PF00005 ABC transporter SJPD1_2511 PF00005 ABC transporter SJPD1_2511 PF12399 Branched-chain amino acid ATP-binding cassette transporter SJPD1_2513 PF02653 Branched-chain amino acid transport system / permease component SJPD1_2515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2515 PF09308 LuxQ, periplasmic SJPD1_2515 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2515 PF00072 Response regulator receiver domain SJPD1_2516 PF00072 Response regulator receiver domain SJPD1_2517 PF00072 Response regulator receiver domain SJPD1_2517 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2519 PF07726 ATPase family associated with various cellular activities (AAA) SJPD1_2519 PF17863 AAA lid domain SJPD1_2520 PF01882 Protein of unknown function DUF58 SJPD1_2528 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2534 PF11799 impB/mucB/samB family C-terminal domain SJPD1_2534 PF11798 IMS family HHH motif SJPD1_2534 PF00817 impB/mucB/samB family SJPD1_2535 PF00690 Cation transporter/ATPase, N-terminus SJPD1_2535 PF00689 Cation transporting ATPase, C-terminus SJPD1_2536 PF16916 Dimerisation domain of Zinc Transporter SJPD1_2536 PF01545 Cation efflux family SJPD1_2543 PF02769 AIR synthase related protein, C-terminal domain SJPD1_2543 PF00586 AIR synthase related protein, N-terminal domain SJPD1_2544 PF01206 Sulfurtransferase TusA SJPD1_2546 PF01464 Transglycosylase SLT domain SJPD1_2546 PF00497 Bacterial extracellular solute-binding proteins, family 3 SJPD1_2547 PF05231 MASE1 SJPD1_2547 PF08448 PAS fold SJPD1_2547 PF00563 EAL domain SJPD1_2547 PF08447 PAS fold SJPD1_2547 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2547 PF13426 PAS domain SJPD1_2549 PF07690 Major Facilitator Superfamily SJPD1_2551 PF00005 ABC transporter SJPD1_2552 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2553 PF12849 PBP superfamily domain SJPD1_2555 PF02634 FdhD/NarQ family SJPD1_2557 PF13247 4Fe-4S dicluster domain SJPD1_2561 PF07660 Secretin and TonB N terminus short domain SJPD1_2561 PF00593 TonB dependent receptor SJPD1_2561 PF07715 TonB-dependent Receptor Plug Domain SJPD1_2562 PF00005 ABC transporter SJPD1_2565 PF00296 Luciferase-like monooxygenase SJPD1_2568 PF02472 Biopolymer transport protein ExbD/TolR SJPD1_2569 PF01618 MotA/TolQ/ExbB proton channel family SJPD1_2570 PF03459 TOBE domain SJPD1_2570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SJPD1_2574 PF13649 Methyltransferase domain SJPD1_2575 PF03459 TOBE domain SJPD1_2576 PF17850 CysA C-terminal regulatory domain SJPD1_2576 PF00005 ABC transporter SJPD1_2576 PF12857 TOBE-like domain SJPD1_2577 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2578 PF00528 Binding-protein-dependent transport system inner membrane component SJPD1_2580 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SJPD1_2584 PF13247 4Fe-4S dicluster domain SJPD1_2590 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2590 PF13493 Domain of unknown function (DUF4118) SJPD1_2590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2590 PF02702 Osmosensitive K+ channel His kinase sensor domain SJPD1_2592 PF03841 L-seryl-tRNA selenium transferase SJPD1_2593 PF03144 Elongation factor Tu domain 2 SJPD1_2593 PF09105 Elongation factor SelB, winged helix SJPD1_2593 PF00009 Elongation factor Tu GTP binding domain SJPD1_2593 PF09107 Elongation factor SelB, winged helix SJPD1_2593 PF09106 Elongation factor SelB, winged helix SJPD1_2596 PF04264 YceI-like domain SJPD1_2597 PF02678 Pirin SJPD1_2597 PF17954 Quercetinase C-terminal cupin domain SJPD1_2604 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2604 PF00072 Response regulator receiver domain SJPD1_2605 PF00672 HAMP domain SJPD1_2605 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2606 PF01965 DJ-1/PfpI family SJPD1_2607 PF07977 FabA-like domain SJPD1_2608 PF00535 Glycosyl transferase family 2 SJPD1_2614 PF13193 AMP-binding enzyme C-terminal domain SJPD1_2614 PF00501 AMP-binding enzyme SJPD1_2614 PF16177 Acetyl-coenzyme A synthetase N-terminus SJPD1_2616 PF12697 Alpha/beta hydrolase family SJPD1_2619 PF00109 Beta-ketoacyl synthase, N-terminal domain SJPD1_2619 PF02801 Beta-ketoacyl synthase, C-terminal domain SJPD1_2620 PF00550 Phosphopantetheine attachment site SJPD1_2621 PF00271 Helicase conserved C-terminal domain SJPD1_2621 PF00270 DEAD/DEAH box helicase SJPD1_2627 PF01841 Transglutaminase-like superfamily SJPD1_2629 PF02086 D12 class N6 adenine-specific DNA methyltransferase SJPD1_2630 PF00072 Response regulator receiver domain SJPD1_2631 PF01425 Amidase SJPD1_2632 PF01425 Amidase SJPD1_2634 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SJPD1_2634 PF00289 Biotin carboxylase, N-terminal domain SJPD1_2634 PF02785 Biotin carboxylase C-terminal domain SJPD1_2637 PF00005 ABC transporter SJPD1_2637 PF08402 TOBE domain SJPD1_2641 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2641 PF00072 Response regulator receiver domain SJPD1_2643 PF00072 Response regulator receiver domain SJPD1_2643 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2644 PF02702 Osmosensitive K+ channel His kinase sensor domain SJPD1_2644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2644 PF13493 Domain of unknown function (DUF4118) SJPD1_2644 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2645 PF02669 K+-transporting ATPase, c chain SJPD1_2647 PF03814 Potassium-transporting ATPase A subunit SJPD1_2648 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SJPD1_2649 PF00672 HAMP domain SJPD1_2649 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2650 PF00106 short chain dehydrogenase SJPD1_2652 PF03435 Saccharopine dehydrogenase NADP binding domain SJPD1_2652 PF16653 Saccharopine dehydrogenase C-terminal domain SJPD1_2653 PF01725 Ham1 family SJPD1_2655 PF07690 Major Facilitator Superfamily SJPD1_2656 PF09335 SNARE associated Golgi protein SJPD1_2659 PF00939 Sodium:sulfate symporter transmembrane region SJPD1_2662 PF00994 Probable molybdopterin binding domain SJPD1_2662 PF03454 MoeA C-terminal region (domain IV) SJPD1_2662 PF03453 MoeA N-terminal region (domain I and II) SJPD1_2663 PF02391 MoaE protein SJPD1_2665 PF04324 BFD-like [2Fe-2S] binding domain SJPD1_2665 PF01592 NifU-like N terminal domain SJPD1_2665 PF01106 NifU-like domain SJPD1_2666 PF00266 Aminotransferase class-V SJPD1_2667 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SJPD1_2667 PF18269 T3SS EscN ATPase C-terminal domain SJPD1_2668 PF01227 GTP cyclohydrolase I SJPD1_2669 PF05697 Bacterial trigger factor protein (TF) SJPD1_2669 PF05698 Bacterial trigger factor protein (TF) C-terminus SJPD1_2669 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SJPD1_2670 PF00574 Clp protease SJPD1_2672 PF01327 Polypeptide deformylase SJPD1_2673 PF01078 Magnesium chelatase, subunit ChlI SJPD1_2673 PF13335 Magnesium chelatase, subunit ChlI C-terminal SJPD1_2674 PF01256 Carbohydrate kinase SJPD1_2674 PF03853 YjeF-related protein N-terminus SJPD1_2675 PF00551 Formyl transferase SJPD1_2676 PF05690 Thiazole biosynthesis protein ThiG SJPD1_2689 PF02384 N-6 DNA Methylase SJPD1_2690 PF02384 N-6 DNA Methylase SJPD1_2693 PF11867 Domain of unknown function (DUF3387) SJPD1_2693 PF18766 SWI2/SNF2 ATPase SJPD1_2693 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SJPD1_2700 PF13533 Biotin-lipoyl like SJPD1_2701 PF00873 AcrB/AcrD/AcrF family SJPD1_2702 PF00873 AcrB/AcrD/AcrF family SJPD1_2703 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SJPD1_2703 PF02321 Outer membrane efflux protein SJPD1_2705 PF00535 Glycosyl transferase family 2 SJPD1_2706 PF04794 YdjC-like protein SJPD1_2708 PF01569 PAP2 superfamily SJPD1_2710 PF00171 Aldehyde dehydrogenase family SJPD1_2713 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SJPD1_2713 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SJPD1_2717 PF03824 High-affinity nickel-transport protein SJPD1_2718 PF02743 Cache domain SJPD1_2718 PF00672 HAMP domain SJPD1_2718 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2719 PF00575 S1 RNA binding domain SJPD1_2719 PF16921 Tex protein YqgF-like domain SJPD1_2719 PF09371 Tex-like protein N-terminal domain SJPD1_2719 PF17674 HHH domain SJPD1_2722 PF02743 Cache domain SJPD1_2722 PF00672 HAMP domain SJPD1_2722 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SJPD1_2725 PF00005 ABC transporter SJPD1_2726 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_2728 PF00440 Bacterial regulatory proteins, tetR family SJPD1_2728 PF09209 Tetracyclin repressor-like, C-terminal domain SJPD1_2729 PF00881 Nitroreductase family SJPD1_2735 PF02687 FtsX-like permease family SJPD1_2736 PF00005 ABC transporter SJPD1_2738 PF01915 Glycosyl hydrolase family 3 C-terminal domain SJPD1_2738 PF00933 Glycosyl hydrolase family 3 N terminal domain SJPD1_2744 PF03358 NADPH-dependent FMN reductase SJPD1_2745 PF01047 MarR family SJPD1_2746 PF00106 short chain dehydrogenase SJPD1_2748 PF00873 AcrB/AcrD/AcrF family SJPD1_2749 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SJPD1_2749 PF00529 HlyD membrane-fusion protein of T1SS SJPD1_2753 PF03707 Bacterial signalling protein N terminal repeat SJPD1_2753 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2753 PF00563 EAL domain SJPD1_2754 PF00486 Transcriptional regulatory protein, C terminal SJPD1_2754 PF00072 Response regulator receiver domain SJPD1_2755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SJPD1_2755 PF00512 His Kinase A (phospho-acceptor) domain SJPD1_2755 PF00672 HAMP domain SJPD1_2757 PF01507 Phosphoadenosine phosphosulfate reductase family SJPD1_2758 PF01507 Phosphoadenosine phosphosulfate reductase family SJPD1_2759 PF00009 Elongation factor Tu GTP binding domain SJPD1_2761 PF00899 ThiF family SJPD1_2763 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SJPD1_2763 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SJPD1_2764 PF10414 Sirohaem synthase dimerisation region SJPD1_2764 PF14824 Sirohaem biosynthesis protein central SJPD1_2764 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SJPD1_2765 PF01053 Cys/Met metabolism PLP-dependent enzyme SJPD1_2771 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2771 PF08448 PAS fold SJPD1_2773 PF01451 Low molecular weight phosphotyrosine protein phosphatase SJPD1_2775 PF03741 Integral membrane protein TerC family SJPD1_2776 PF02621 Menaquinone biosynthesis SJPD1_2777 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SJPD1_2777 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SJPD1_2779 PF00390 Malic enzyme, N-terminal domain SJPD1_2779 PF01515 Phosphate acetyl/butaryl transferase SJPD1_2779 PF03949 Malic enzyme, NAD binding domain SJPD1_2780 PF00749 tRNA synthetases class I (E and Q), catalytic domain SJPD1_2782 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SJPD1_2782 PF00289 Biotin carboxylase, N-terminal domain SJPD1_2782 PF02785 Biotin carboxylase C-terminal domain SJPD1_2783 PF00364 Biotin-requiring enzyme SJPD1_2784 PF00692 dUTPase SJPD1_2788 PF10672 S-adenosylmethionine-dependent methyltransferase SJPD1_2788 PF17785 PUA-like domain SJPD1_2789 PF12146 Serine aminopeptidase, S33 SJPD1_2791 PF00669 Bacterial flagellin N-terminal helical region SJPD1_2792 PF02719 Polysaccharide biosynthesis protein SJPD1_2793 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SJPD1_2794 PF02348 Cytidylyltransferase SJPD1_2796 PF13302 Acetyltransferase (GNAT) domain SJPD1_2797 PF08666 SAF domain SJPD1_2797 PF03102 NeuB family SJPD1_2798 PF08241 Methyltransferase domain SJPD1_2800 PF00117 Glutamine amidotransferase class-I SJPD1_2801 PF00977 Histidine biosynthesis protein SJPD1_2803 PF00700 Bacterial flagellin C-terminal helical region SJPD1_2803 PF00669 Bacterial flagellin N-terminal helical region SJPD1_2803 PF07196 Flagellin hook IN motif SJPD1_2803 PF00700 Bacterial flagellin C-terminal helical region SJPD1_2803 PF00669 Bacterial flagellin N-terminal helical region SJPD1_2803 PF07196 Flagellin hook IN motif SJPD1_2804 PF01396 Topoisomerase DNA binding C4 zinc finger SJPD1_2804 PF01131 DNA topoisomerase SJPD1_2804 PF01751 Toprim domain SJPD1_2805 PF04055 Radical SAM superfamily SJPD1_2805 PF06968 Biotin and Thiamin Synthesis associated domain SJPD1_2806 PF00285 Citrate synthase, C-terminal domain SJPD1_2809 PF03952 Enolase, N-terminal domain SJPD1_2809 PF00113 Enolase, C-terminal TIM barrel domain SJPD1_2810 PF00154 recA bacterial DNA recombination protein SJPD1_2811 PF02621 Menaquinone biosynthesis SJPD1_2812 PF01313 Bacterial export proteins, family 3 SJPD1_2813 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SJPD1_2815 PF00814 Glycoprotease family SJPD1_2817 PF00563 EAL domain SJPD1_2817 PF00990 Diguanylate cyclase, GGDEF domain SJPD1_2817 PF03707 Bacterial signalling protein N terminal repeat SJPD1_2821 PF00149 Calcineurin-like phosphoesterase SJPD1_2822 PF01235 Sodium:alanine symporter family SJPD1_2823 PF00860 Permease family SJPD1_2824 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SJPD1_2824 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SJPD1_2824 PF13288 DXP reductoisomerase C-terminal domain SJPD1_2828 PF02595 Glycerate kinase family SJPD1_2829 PF12833 Helix-turn-helix domain SJPD1_2829 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SJPD1_2829 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SJPD1_2829 PF02805 Metal binding domain of Ada SJPD1_2832 PF00027 Cyclic nucleotide-binding domain SJPD1_2832 PF13545 Crp-like helix-turn-helix domain SJPD1_2834 PF00330 Aconitase family (aconitate hydratase) SJPD1_2835 PF12804 MobA-like NTP transferase domain SJPD1_2840 PF02253 Phospholipase A1 SJPD1_2841 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) SJPD1_2842 PF01967 MoaC family SJPD1_2843 PF04359 Protein of unknown function (DUF493) SJPD1_2860 PF01027 Inhibitor of apoptosis-promoting Bax1 SJPD1_2863 PF13247 4Fe-4S dicluster domain SJPD1_2864 PF00384 Molybdopterin oxidoreductase SJPD1_2864 PF01568 Molydopterin dinucleotide binding domain SJPD1_2864 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_2866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SJPD1_2866 PF03466 LysR substrate binding domain SJPD1_2870 PF00037 4Fe-4S binding domain SJPD1_2870 PF13247 4Fe-4S dicluster domain SJPD1_2871 PF01568 Molydopterin dinucleotide binding domain SJPD1_2871 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_2871 PF10518 TAT (twin-arginine translocation) pathway signal sequence SJPD1_2871 PF00384 Molybdopterin oxidoreductase SJPD1_2872 PF13649 Methyltransferase domain SJPD1_2873 PF02397 Bacterial sugar transferase SJPD1_2876 PF00529 HlyD membrane-fusion protein of T1SS SJPD1_2877 PF00664 ABC transporter transmembrane region SJPD1_2877 PF00005 ABC transporter SJPD1_2884 PF03840 Preprotein translocase SecG subunit SJPD1_2886 PF01765 Ribosome recycling factor SJPD1_2887 PF00156 Phosphoribosyl transferase domain SJPD1_2892 PF04011 LemA family SJPD1_2895 PF03963 Flagellar hook capping protein - N-terminal region SJPD1_2896 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SJPD1_2896 PF00460 Flagella basal body rod protein SJPD1_2896 PF07196 Flagellin hook IN motif SJPD1_2896 PF07559 Flagellar basal body protein FlaE SJPD1_2897 PF00460 Flagella basal body rod protein SJPD1_2897 PF07559 Flagellar basal body protein FlaE SJPD1_2897 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SJPD1_2897 PF07196 Flagellin hook IN motif SJPD1_2898 PF02511 Thymidylate synthase complementing protein SJPD1_2899 PF02075 Crossover junction endodeoxyribonuclease RuvC