locus-tag	class	description
SJPD1_0002	COG0592	DNA-directed DNA polymerase activity
SJPD1_0003	COG0187	DNA topoisomerase II activity
SJPD1_0004	COG5001	Diguanylate cyclase
SJPD1_0005	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
SJPD1_0007	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
SJPD1_0008	COG1194	a g-specific adenine glycosylase
SJPD1_0009	COG2814	Major facilitator Superfamily
SJPD1_0010	COG0471	metal ion transport
SJPD1_0011	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
SJPD1_0014	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
SJPD1_0015	COG0066	3-isopropylmalate dehydratase activity
SJPD1_0019	COG0840	transmembrane signaling receptor activity
SJPD1_0023	COG1335	isochorismatase
SJPD1_0027	COG3708	Transcriptional regulator
SJPD1_0027	COG2207	Transcriptional regulator
SJPD1_0029	COG1355	regulation of microtubule-based process
SJPD1_0031	COG2078	PFAM AMMECR1 domain protein
SJPD1_0038	COG3150	esterase
SJPD1_0040	COG3383	formate dehydrogenase (NAD+) activity
SJPD1_0042	COG4974	Belongs to the 'phage' integrase family
SJPD1_0052	COG3093	addiction module antidote protein HigA
SJPD1_0074	COG0129	dihydroxy-acid dehydratase activity
SJPD1_0075	COG2095	MarC family integral membrane protein
SJPD1_0080	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
SJPD1_0081	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SJPD1_0082	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SJPD1_0085	COG1328	CTP reductase activity
SJPD1_0085	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
SJPD1_0086	COG1794	racemase activity, acting on amino acids and derivatives
SJPD1_0087	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
SJPD1_0088	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
SJPD1_0089	COG0564	pseudouridine synthase activity
SJPD1_0090	COG0179	Fumarylacetoacetate (FAA) hydrolase
SJPD1_0092	COG0820	rRNA (adenine-C2-)-methyltransferase activity
SJPD1_0094	COG0107	imidazoleglycerol-phosphate synthase activity
SJPD1_0096	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
SJPD1_0097	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
SJPD1_0097	COG0517	IMP dehydrogenase activity
SJPD1_0098	COG1187	pseudouridine synthase activity
SJPD1_0099	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
SJPD1_0099	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
SJPD1_0101	COG2257	FlhB HrpN YscU SpaS Family
SJPD1_0105	COG0237	dephospho-CoA kinase activity
SJPD1_0106	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
SJPD1_0108	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
SJPD1_0109	COG0268	Binds directly to 16S ribosomal RNA
SJPD1_0110	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
SJPD1_0113	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
SJPD1_0114	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
SJPD1_0115	COG0291	Belongs to the bacterial ribosomal protein bL35 family
SJPD1_0116	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
SJPD1_0117	COG0348	domain, Protein
SJPD1_0122	COG0754	glutathionylspermidine amidase activity
SJPD1_0123	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
SJPD1_0132	COG5002	protein histidine kinase activity
SJPD1_0133	COG0745	RESPONSE REGULATOR receiver
SJPD1_0137	COG1127	ABC transporter
SJPD1_0138	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
SJPD1_0141	COG2095	MarC family integral membrane protein
SJPD1_0142	COG0840	transmembrane signaling receptor activity
SJPD1_0144	COG0784	Response regulator, receiver
SJPD1_0144	COG3437	response regulator, receiver
SJPD1_0148	COG5002	protein histidine kinase activity
SJPD1_0150	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SJPD1_0152	COG0004	ammonium transporteR
SJPD1_0153	COG0667	Aldo Keto reductase
SJPD1_0155	COG0745	RESPONSE REGULATOR receiver
SJPD1_0158	COG0765	amino acid transport
SJPD1_0166	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
SJPD1_0168	COG0318	PFAM AMP-dependent synthetase and ligase
SJPD1_0169	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SJPD1_0170	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0171	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0172	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0173	COG0649	NAD binding
SJPD1_0177	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
SJPD1_0178	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0179	COG0839	Belongs to the complex I subunit 6 family
SJPD1_0180	COG0713	ATP synthesis coupled electron transport
SJPD1_0181	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SJPD1_0182	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0183	COG1007	ATP synthesis coupled electron transport
SJPD1_0185	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_0186	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
SJPD1_0190	COG0840	transmembrane signaling receptor activity
SJPD1_0192	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
SJPD1_0193	COG0303	'Molybdopterin
SJPD1_0195	COG1385	rRNA (uridine-N3-)-methyltransferase activity
SJPD1_0196	COG0254	rRNA binding
SJPD1_0197	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
SJPD1_0198	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
SJPD1_0201	COG0436	Aminotransferase
SJPD1_0202	COG0460	homoserine dehydrogenase
SJPD1_0203	COG0792	nuclease activity
SJPD1_0204	COG3118	belongs to the thioredoxin family
SJPD1_0205	COG0492	ferredoxin-NADP+ reductase activity
SJPD1_0206	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
SJPD1_0207	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
SJPD1_0208	COG1242	4 iron, 4 sulfur cluster binding
SJPD1_0211	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
SJPD1_0211	COG0140	phosphoribosyl-ATP diphosphatase activity
SJPD1_0214	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_0215	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
SJPD1_0217	COG2205	protein histidine kinase activity
SJPD1_0217	COG2770	Histidine kinase
SJPD1_0218	COG0745	RESPONSE REGULATOR receiver
SJPD1_0220	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
SJPD1_0221	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
SJPD1_0222	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SJPD1_0223	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
SJPD1_0226	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
SJPD1_0230	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
SJPD1_0231	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
SJPD1_0232	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SJPD1_0233	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
SJPD1_0234	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
SJPD1_0236	COG0835	chemotaxis
SJPD1_0236	COG0784	Response regulator, receiver
SJPD1_0237	COG2198	Histidine kinase
SJPD1_0237	COG0643	Histidine kinase
SJPD1_0239	COG0835	chemotaxis
SJPD1_0242	COG0560	Phosphoserine phosphatase
SJPD1_0246	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
SJPD1_0249	COG0193	aminoacyl-tRNA hydrolase activity
SJPD1_0251	COG0019	diaminopimelate decarboxylase activity
SJPD1_0252	COG0077	Prephenate dehydratase
SJPD1_0252	COG1605	Chorismate mutase
SJPD1_0253	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SJPD1_0255	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_0257	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
SJPD1_0258	COG0735	belongs to the Fur family
SJPD1_0259	COG0450	alkyl hydroperoxide reductase
SJPD1_0262	COG0105	UTP biosynthetic process
SJPD1_0264	COG0333	Belongs to the bacterial ribosomal protein bL32 family
SJPD1_0265	COG0416	fatty acid biosynthetic process
SJPD1_0266	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
SJPD1_0267	COG0714	Associated with various cellular activities
SJPD1_0271	COG2304	oxidoreductase activity
SJPD1_0273	COG0287	Prephenate dehydrogenase
SJPD1_0274	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
SJPD1_0276	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_0278	COG0745	RESPONSE REGULATOR receiver
SJPD1_0280	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
SJPD1_0281	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
SJPD1_0283	COG0157	Belongs to the NadC ModD family
SJPD1_0284	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
SJPD1_0287	COG0850	regulation of cytokinetic process
SJPD1_0288	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
SJPD1_0290	COG0083	homoserine kinase activity
SJPD1_0291	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
SJPD1_0293	COG0779	Required for maturation of 30S ribosomal subunits
SJPD1_0294	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SJPD1_0294	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
SJPD1_0297	COG5001	Diguanylate cyclase
SJPD1_0298	COG1278	Cold shock
SJPD1_0299	COG5002	protein histidine kinase activity
SJPD1_0302	COG3258	Cytochrome c
SJPD1_0304	COG1242	4 iron, 4 sulfur cluster binding
SJPD1_0305	COG0243	molybdopterin cofactor binding
SJPD1_0306	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_0307	COG3301	Polysulphide reductase, NrfD
SJPD1_0308	COG2199	diguanylate cyclase activity
SJPD1_0308	COG3287	FIST C domain
SJPD1_0308	COG2200	EAL domain
SJPD1_0310	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_0311	COG3301	Polysulphide reductase, NrfD
SJPD1_0312	COG0745	RESPONSE REGULATOR receiver
SJPD1_0313	COG5002	protein histidine kinase activity
SJPD1_0315	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SJPD1_0320	COG0848	biopolymer transport protein
SJPD1_0321	COG0811	peptide transport
SJPD1_0322	COG1227	inorganic diphosphatase activity
SJPD1_0326	COG1570	exodeoxyribonuclease VII activity
SJPD1_0330	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
SJPD1_0332	COG2207	Transcriptional regulator
SJPD1_0333	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
SJPD1_0334	COG0583	DNA-binding transcription factor activity
SJPD1_0335	COG2855	membrane
SJPD1_0336	COG0386	Belongs to the glutathione peroxidase family
SJPD1_0337	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
SJPD1_0339	COG0402	S-adenosylhomocysteine deaminase activity
SJPD1_0340	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
SJPD1_0341	COG0006	proline dipeptidase activity
SJPD1_0342	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
SJPD1_0343	COG1419	protein localization to endoplasmic reticulum
SJPD1_0344	COG0455	bacterial-type flagellum organization
SJPD1_0346	COG1191	sigma factor activity
SJPD1_0347	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_0348	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_0348	COG1776	CheC inhibitor of MCP methylation
SJPD1_0351	COG0463	Glycosyl transferase, family 2
SJPD1_0353	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
SJPD1_0357	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
SJPD1_0359	COG1040	competence protein
SJPD1_0367	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
SJPD1_0369	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
SJPD1_0370	COG0731	radical SAM domain protein
SJPD1_0374	COG0582	viral genome integration into host DNA
SJPD1_0375	COG1002	Type II restriction enzyme, methylase subunits
SJPD1_0379	COG3177	Filamentation induced by cAMP protein fic
SJPD1_0380	COG1061	Type III restriction enzyme res subunit
SJPD1_0381	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
SJPD1_0392	COG1464	Belongs to the NlpA lipoprotein family
SJPD1_0393	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
SJPD1_0394	COG2011	ABC-type metal ion transport system permease component
SJPD1_0395	COG0306	phosphate transporter
SJPD1_0396	COG0039	L-malate dehydrogenase activity
SJPD1_0397	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
SJPD1_0399	COG1834	amidinotransferase
SJPD1_0400	COG3708	Transcriptional regulator
SJPD1_0400	COG2207	Transcriptional regulator
SJPD1_0401	COG1053	succinate dehydrogenase
SJPD1_0409	COG2199	diguanylate cyclase activity
SJPD1_0409	COG3287	FIST C domain
SJPD1_0409	COG2200	EAL domain
SJPD1_0412	COG3118	belongs to the thioredoxin family
SJPD1_0419	COG4628	conserved protein (DUF2132)
SJPD1_0420	COG4221	oxidoreductase activity
SJPD1_0421	COG0683	leucine binding
SJPD1_0422	COG0559	Belongs to the binding-protein-dependent transport system permease family
SJPD1_0425	COG0410	ABC transporter
SJPD1_0427	COG3022	response to hydroperoxide
SJPD1_0432	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
SJPD1_0433	COG0267	Belongs to the bacterial ribosomal protein bL33 family
SJPD1_0435	COG0250	Participates in transcription elongation, termination and antitermination
SJPD1_0436	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
SJPD1_0437	COG0081	regulation of translation
SJPD1_0438	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
SJPD1_0439	COG0222	ribosome binding
SJPD1_0440	COG0085	RNA polymerase activity
SJPD1_0441	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
SJPD1_0442	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
SJPD1_0446	COG0697	spore germination
SJPD1_0447	COG0697	spore germination
SJPD1_0448	COG0656	L-ascorbic acid biosynthetic process
SJPD1_0450	COG0471	metal ion transport
SJPD1_0455	COG0745	RESPONSE REGULATOR receiver
SJPD1_0456	COG0747	negative chemotaxis
SJPD1_0458	COG0840	transmembrane signaling receptor activity
SJPD1_0459	COG0840	transmembrane signaling receptor activity
SJPD1_0461	COG1034	ATP synthesis coupled electron transport
SJPD1_0462	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
SJPD1_0463	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0464	COG0839	Belongs to the complex I subunit 6 family
SJPD1_0465	COG0713	ATP synthesis coupled electron transport
SJPD1_0466	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SJPD1_0467	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
SJPD1_0468	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0469	COG1007	ATP synthesis coupled electron transport
SJPD1_0475	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
SJPD1_0476	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0476	COG0649	NAD binding
SJPD1_0477	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0478	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_0481	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
SJPD1_0485	COG0357	Ribosomal RNA small subunit methyltransferase G
SJPD1_0487	COG0840	transmembrane signaling receptor activity
SJPD1_0487	COG3290	protein histidine kinase activity
SJPD1_0489	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
SJPD1_0490	COG1970	mechanosensitive ion channel activity
SJPD1_0492	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
SJPD1_0493	COG0113	porphobilinogen synthase activity
SJPD1_0494	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
SJPD1_0496	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SJPD1_0497	COG0247	lactate metabolic process
SJPD1_0498	COG0745	RESPONSE REGULATOR receiver
SJPD1_0498	COG3706	GGDEF domain
SJPD1_0500	COG3012	SEC-C Motif Domain Protein
SJPD1_0503	COG3706	GGDEF domain
SJPD1_0504	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
SJPD1_0506	COG1053	succinate dehydrogenase
SJPD1_0507	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
SJPD1_0509	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
SJPD1_0511	COG0628	permease
SJPD1_0512	COG2255	four-way junction helicase activity
SJPD1_0513	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
SJPD1_0515	COG0159	tryptophan synthase activity
SJPD1_0519	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
SJPD1_0520	COG1136	(ABC) transporter
SJPD1_0521	COG1684	flagellar biosynthetic protein fliR
SJPD1_0523	COG0194	GDP metabolic process
SJPD1_0524	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
SJPD1_0525	COG0018	arginyl-trna synthetase
SJPD1_0527	COG2200	EAL domain
SJPD1_0527	COG3287	FIST C domain
SJPD1_0527	COG2199	diguanylate cyclase activity
SJPD1_0530	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
SJPD1_0531	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
SJPD1_0533	COG0149	triose-phosphate isomerase activity
SJPD1_0534	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
SJPD1_0537	COG0195	Participates in both transcription termination and antitermination
SJPD1_0544	COG0037	tRNA processing
SJPD1_0545	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SJPD1_0546	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
SJPD1_0547	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
SJPD1_0552	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
SJPD1_0553	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
SJPD1_0554	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
SJPD1_0556	COG1151	hydroxylamine reductase activity
SJPD1_0557	COG3040	lipid binding
SJPD1_0560	COG2326	polyphosphate kinase activity
SJPD1_0563	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_0564	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_0567	COG0513	Belongs to the DEAD box helicase family
SJPD1_0568	COG1944	ATP diphosphatase activity
SJPD1_0571	COG4191	Histidine kinase
SJPD1_0572	COG2204	response regulator
SJPD1_0573	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
SJPD1_0581	COG1333	cytochrome c biogenesis protein
SJPD1_0581	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SJPD1_0589	COG1546	Belongs to the CinA family
SJPD1_0589	COG1058	Belongs to the CinA family
SJPD1_0590	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
SJPD1_0593	COG0516	GMP reductase activity
SJPD1_0593	COG0517	IMP dehydrogenase activity
SJPD1_0594	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
SJPD1_0597	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
SJPD1_0598	COG0436	Aminotransferase
SJPD1_0601	COG1193	negative regulation of DNA recombination
SJPD1_0602	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
SJPD1_0603	COG0251	oxidation-reduction process
SJPD1_0604	COG0579	oxidoreductase
SJPD1_0608	COG3409	Peptidoglycan-binding domain 1 protein
SJPD1_0608	COG0793	Belongs to the peptidase S41A family
SJPD1_0611	COG0469	pyruvate kinase activity
SJPD1_0612	COG0261	This protein binds to 23S rRNA in the presence of protein L20
SJPD1_0613	COG0211	Belongs to the bacterial ribosomal protein bL27 family
SJPD1_0614	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
SJPD1_0615	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
SJPD1_0616	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
SJPD1_0618	COG1192	Involved in chromosome partitioning
SJPD1_0619	COG1475	DNA binding
SJPD1_0621	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
SJPD1_0622	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
SJPD1_0624	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
SJPD1_0627	COG0811	peptide transport
SJPD1_0628	COG0848	biopolymer transport protein
SJPD1_0630	COG0823	Involved in the tonB-independent uptake of proteins
SJPD1_0631	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
SJPD1_0631	COG2885	chlorophyll binding
SJPD1_0633	COG1047	Peptidyl-prolyl cis-trans
SJPD1_0635	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
SJPD1_0636	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
SJPD1_0637	COG0037	tRNA processing
SJPD1_0639	COG0067	glutamate synthase
SJPD1_0639	COG0069	glutamate synthase activity
SJPD1_0639	COG0070	glutamate synthase
SJPD1_0640	COG0493	'glutamate synthase
SJPD1_0642	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
SJPD1_0643	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
SJPD1_0644	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
SJPD1_0646	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
SJPD1_0650	COG1776	CheC inhibitor of MCP methylation
SJPD1_0650	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
SJPD1_0660	COG0748	coenzyme F420 binding
SJPD1_0663	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
SJPD1_0664	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_0665	COG1846	Transcriptional regulator
SJPD1_0668	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
SJPD1_0670	COG1113	amino acid transport
SJPD1_0671	COG0730	response to heat
SJPD1_0672	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
SJPD1_0673	COG1301	dicarboxylic acid transport
SJPD1_0674	COG1301	dicarboxylic acid transport
SJPD1_0676	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SJPD1_0676	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
SJPD1_0677	COG1971	Probably functions as a manganese efflux pump
SJPD1_0679	COG0484	heat shock protein binding
SJPD1_0681	COG0745	RESPONSE REGULATOR receiver
SJPD1_0683	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
SJPD1_0685	COG0840	transmembrane signaling receptor activity
SJPD1_0686	COG0318	PFAM AMP-dependent synthetase and ligase
SJPD1_0687	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
SJPD1_0688	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
SJPD1_0691	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
SJPD1_0692	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
SJPD1_0695	COG3706	GGDEF domain
SJPD1_0697	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
SJPD1_0701	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
SJPD1_0704	COG5002	protein histidine kinase activity
SJPD1_0704	COG2205	protein histidine kinase activity
SJPD1_0704	COG0784	Response regulator, receiver
SJPD1_0707	COG0322	excinuclease ABC activity
SJPD1_0710	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
SJPD1_0712	COG0518	GMP synthase (glutamine-hydrolyzing) activity
SJPD1_0712	COG0519	Catalyzes the synthesis of GMP from XMP
SJPD1_0714	COG0151	Belongs to the GarS family
SJPD1_0716	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
SJPD1_0718	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
SJPD1_0722	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_0723	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
SJPD1_0724	COG0165	Argininosuccinate lyase
SJPD1_0725	COG0537	adenosine 5'-monophosphoramidase activity
SJPD1_0726	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
SJPD1_0727	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SJPD1_0727	COG0072	phenylalanine-tRNA ligase activity
SJPD1_0728	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
SJPD1_0729	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
SJPD1_0730	COG1185	polyribonucleotide nucleotidyltransferase activity
SJPD1_0730	COG0539	negative regulation of cytoplasmic translation
SJPD1_0732	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
SJPD1_0734	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_0736	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
SJPD1_0740	COG0840	transmembrane signaling receptor activity
SJPD1_0743	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
SJPD1_0746	COG2996	Protein conserved in bacteria
SJPD1_0747	COG2081	HI0933 family
SJPD1_0752	COG1902	pentaerythritol trinitrate reductase activity
SJPD1_0774	COG1538	Outer membrane efflux protein
SJPD1_0776	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_0777	COG0840	transmembrane signaling receptor activity
SJPD1_0778	COG0840	transmembrane signaling receptor activity
SJPD1_0778	COG0840	transmembrane signaling receptor activity
SJPD1_0780	COG0587	DNA-directed DNA polymerase activity
SJPD1_0781	COG4191	Histidine kinase
SJPD1_0783	COG1346	cytolysis
SJPD1_0784	COG1380	Effector of murein hydrolase LrgA
SJPD1_0788	COG0772	Belongs to the SEDS family
SJPD1_0789	COG0564	pseudouridine synthase activity
SJPD1_0791	COG0220	tRNA (guanine-N7-)-methyltransferase activity
SJPD1_0796	COG0528	UMP kinase activity
SJPD1_0797	COG1758	RNA polymerase activity
SJPD1_0798	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
SJPD1_0799	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
SJPD1_0800	COG2070	2-Nitropropane dioxygenase
SJPD1_0801	COG0860	N-Acetylmuramoyl-L-alanine amidase
SJPD1_0803	COG0563	adenylate kinase activity
SJPD1_0804	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
SJPD1_0805	COG3706	GGDEF domain
SJPD1_0807	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
SJPD1_0808	COG0497	DNA recombination
SJPD1_0810	COG0084	hydrolase, TatD family'
SJPD1_0811	COG3942	CHAP domain
SJPD1_0811	COG1388	LysM domain
SJPD1_0812	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
SJPD1_0813	COG0131	Imidazoleglycerol-phosphate dehydratase
SJPD1_0814	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
SJPD1_0817	COG0218	Necessary for normal cell division and for the maintenance of normal septation
SJPD1_0823	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
SJPD1_0825	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SJPD1_0825	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
SJPD1_0827	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
SJPD1_0832	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SJPD1_0833	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SJPD1_0839	COG0583	DNA-binding transcription factor activity
SJPD1_0840	COG1053	succinate dehydrogenase
SJPD1_0841	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
SJPD1_0842	COG2048	Heterodisulfide reductase, subunit B
SJPD1_0845	COG3005	denitrification pathway
SJPD1_0846	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
SJPD1_0847	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SJPD1_0847	COG1333	cytochrome c biogenesis protein
SJPD1_0851	COG3545	Serine hydrolase
SJPD1_0853	COG0463	Glycosyl transferase, family 2
SJPD1_0856	COG0398	Pfam SNARE associated Golgi protein
SJPD1_0858	COG0398	Pfam SNARE associated Golgi protein
SJPD1_0860	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
SJPD1_0863	COG2207	Transcriptional regulator
SJPD1_0865	COG1575	Belongs to the MenA family. Type 1 subfamily
SJPD1_0871	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
SJPD1_0874	COG0243	molybdopterin cofactor binding
SJPD1_0875	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_0876	COG0348	domain, Protein
SJPD1_0877	COG3043	anaerobic respiration
SJPD1_0884	COG1342	Belongs to the UPF0251 family
SJPD1_0888	COG1271	oxidase subunit
SJPD1_0889	COG1294	oxidase, subunit
SJPD1_0895	COG0243	molybdopterin cofactor binding
SJPD1_0898	COG0745	RESPONSE REGULATOR receiver
SJPD1_0900	COG3852	Histidine kinase
SJPD1_0905	COG2863	cytochrome
SJPD1_0906	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_0907	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_0910	COG2199	diguanylate cyclase activity
SJPD1_0910	COG2200	EAL domain
SJPD1_0910	COG3287	FIST C domain
SJPD1_0912	COG0513	Belongs to the DEAD box helicase family
SJPD1_0915	COG2084	Dehydrogenase
SJPD1_0916	COG3290	protein histidine kinase activity
SJPD1_0916	COG0840	transmembrane signaling receptor activity
SJPD1_0917	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_0918	COG2226	methyltransferase
SJPD1_0920	COG1280	lysine exporter protein (LysE YggA)
SJPD1_0921	COG0784	Response regulator, receiver
SJPD1_0921	COG3437	response regulator, receiver
SJPD1_0922	COG0840	transmembrane signaling receptor activity
SJPD1_0922	COG3290	protein histidine kinase activity
SJPD1_0924	COG0217	transcriptional regulatory protein
SJPD1_0929	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
SJPD1_0942	COG3409	Peptidoglycan-binding domain 1 protein
SJPD1_0942	COG0860	N-Acetylmuramoyl-L-alanine amidase
SJPD1_0963	COG3550	peptidyl-serine autophosphorylation
SJPD1_0971	COG0419	ATPase involved in DNA repair
SJPD1_0973	COG1204	response to ionizing radiation
SJPD1_0989	COG0577	efflux transmembrane transporter activity
SJPD1_0989	COG1136	(ABC) transporter
SJPD1_0994	COG0348	domain, Protein
SJPD1_0997	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_1000	COG4263	nitrous-oxide reductase activity
SJPD1_1001	COG3852	Histidine kinase
SJPD1_1002	COG2207	Transcriptional regulator
SJPD1_1002	COG4753	response regulator
SJPD1_1003	COG2863	cytochrome
SJPD1_1004	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_1005	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_1006	COG2857	Cytochrome c1
SJPD1_1009	COG2199	diguanylate cyclase activity
SJPD1_1009	COG2200	EAL domain
SJPD1_1009	COG3287	FIST C domain
SJPD1_1010	COG0840	transmembrane signaling receptor activity
SJPD1_1013	COG0582	viral genome integration into host DNA
SJPD1_1020	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_1027	COG3045	CreA protein
SJPD1_1033	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_1034	COG0651	ATP synthesis coupled electron transport
SJPD1_1035	COG0650	Formate hydrogenlyase subunit 4
SJPD1_1036	COG4237	Hydrogenase 4 membrane
SJPD1_1037	COG0651	ATP synthesis coupled electron transport
SJPD1_1038	COG3261	NADH dehydrogenase
SJPD1_1038	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
SJPD1_1040	COG3260	NADH ubiquinone oxidoreductase 20
SJPD1_1043	COG2116	formate transmembrane transporter activity
SJPD1_1065	COG0745	RESPONSE REGULATOR receiver
SJPD1_1069	COG4191	Histidine kinase
SJPD1_1070	COG0484	heat shock protein binding
SJPD1_1071	COG0545	Peptidyl-prolyl cis-trans isomerase
SJPD1_1072	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_1073	COG3301	Polysulphide reductase, NrfD
SJPD1_1074	COG1333	cytochrome c biogenesis protein
SJPD1_1074	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
SJPD1_1080	COG1136	(ABC) transporter
SJPD1_1092	COG2308	Evidence 4 Homologs of previously reported genes of
SJPD1_1095	COG2966	Psort location CytoplasmicMembrane, score
SJPD1_1096	COG3610	response to peptide
SJPD1_1098	COG2217	Heavy metal translocating P-type atpase
SJPD1_1102	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
SJPD1_1103	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
SJPD1_1103	COG2169	Transcriptional regulator
SJPD1_1105	COG0352	thiamine-phosphate diphosphorylase activity
SJPD1_1108	COG1272	protein, Hemolysin III
SJPD1_1109	COG1280	lysine exporter protein (LysE YggA)
SJPD1_1110	COG0697	spore germination
SJPD1_1114	COG2176	DNA-directed DNA polymerase activity
SJPD1_1118	COG0798	PFAM Bile acid sodium symporter
SJPD1_1119	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
SJPD1_1121	COG0501	Belongs to the peptidase M48B family
SJPD1_1125	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
SJPD1_1126	COG2201	protein-glutamate methylesterase activity
SJPD1_1127	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
SJPD1_1129	COG0133	tryptophan synthase activity
SJPD1_1130	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
SJPD1_1132	COG0698	ribose 5-phosphate isomerase
SJPD1_1133	COG1994	Peptidase M50
SJPD1_1134	COG0681	Belongs to the peptidase S26 family
SJPD1_1135	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
SJPD1_1137	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
SJPD1_1140	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
SJPD1_1142	COG0612	Peptidase, M16
SJPD1_1143	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
SJPD1_1144	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
SJPD1_1149	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
SJPD1_1150	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
SJPD1_1151	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
SJPD1_1152	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
SJPD1_1153	COG0629	single-stranded DNA binding
SJPD1_1154	COG0360	Binds together with S18 to 16S ribosomal RNA
SJPD1_1155	COG1466	dna polymerase III delta subunit
SJPD1_1156	COG0557	exoribonuclease II activity
SJPD1_1158	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
SJPD1_1159	COG2894	cell division
SJPD1_1160	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
SJPD1_1161	COG2861	carbohydrate metabolic process
SJPD1_1163	COG0730	response to heat
SJPD1_1164	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
SJPD1_1166	COG1760	l-serine dehydratase
SJPD1_1167	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
SJPD1_1168	COG2860	membrane
SJPD1_1169	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
SJPD1_1172	COG0736	holo-[acyl-carrier-protein] synthase activity
SJPD1_1173	COG1580	Controls the rotational direction of flagella during chemotaxis
SJPD1_1174	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
SJPD1_1175	COG0552	protein localization to endoplasmic reticulum
SJPD1_1176	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
SJPD1_1177	COG1418	mRNA catabolic process
SJPD1_1178	COG1132	(ABC) transporter
SJPD1_1183	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
SJPD1_1185	COG0745	RESPONSE REGULATOR receiver
SJPD1_1187	COG5001	Diguanylate cyclase
SJPD1_1187	COG5002	protein histidine kinase activity
SJPD1_1188	COG4191	Histidine kinase
SJPD1_1188	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_1191	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
SJPD1_1203	COG1408	metallophosphoesterase
SJPD1_1204	COG2353	YceI-like domain
SJPD1_1207	COG1136	(ABC) transporter
SJPD1_1213	COG1454	alcohol dehydrogenase
SJPD1_1219	COG0242	peptide deformylase activity
SJPD1_1220	COG0824	Thioesterase
SJPD1_1223	COG1573	uracil-dna glycosylase
SJPD1_1226	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_1230	COG3287	FIST C domain
SJPD1_1230	COG2200	EAL domain
SJPD1_1230	COG2199	diguanylate cyclase activity
SJPD1_1233	COG0426	domain, Protein
SJPD1_1236	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_1238	COG1053	succinate dehydrogenase
SJPD1_1243	COG2040	homocysteine
SJPD1_1245	COG3264	Mechanosensitive ion channel
SJPD1_1245	COG1196	nuclear chromosome segregation
SJPD1_1246	COG1433	Dinitrogenase iron-molybdenum cofactor
SJPD1_1248	COG0716	FMN binding
SJPD1_1253	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
SJPD1_1256	COG0346	lactoylglutathione lyase activity
SJPD1_1263	COG1451	nucleotide metabolic process
SJPD1_1267	COG2207	Transcriptional regulator
SJPD1_1271	COG0697	spore germination
SJPD1_1273	COG3706	GGDEF domain
SJPD1_1277	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
SJPD1_1279	COG0840	transmembrane signaling receptor activity
SJPD1_1283	COG1276	copper resistance
SJPD1_1284	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
SJPD1_1289	COG5002	protein histidine kinase activity
SJPD1_1290	COG0745	RESPONSE REGULATOR receiver
SJPD1_1292	COG3153	acetyltransferase
SJPD1_1292	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
SJPD1_1293	COG0328	RNA-DNA hybrid ribonuclease activity
SJPD1_1296	COG3290	protein histidine kinase activity
SJPD1_1296	COG0840	transmembrane signaling receptor activity
SJPD1_1298	COG0493	'glutamate synthase
SJPD1_1299	COG0375	protein maturation
SJPD1_1300	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_1302	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_1304	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
SJPD1_1311	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
SJPD1_1312	COG0523	cobalamin synthesis protein
SJPD1_1313	COG2879	small protein
SJPD1_1314	COG1966	Carbon starvation protein
SJPD1_1316	COG1053	succinate dehydrogenase
SJPD1_1323	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
SJPD1_1324	COG0585	pseudouridine synthase activity
SJPD1_1325	COG0569	domain protein
SJPD1_1325	COG0475	glutathione-regulated potassium exporter activity
SJPD1_1328	COG3706	GGDEF domain
SJPD1_1329	COG0351	phosphomethylpyrimidine kinase
SJPD1_1331	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
SJPD1_1333	COG0840	transmembrane signaling receptor activity
SJPD1_1336	COG0488	(ABC) transporter
SJPD1_1337	COG1360	Flagellar Motor Protein
SJPD1_1338	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
SJPD1_1339	COG1309	transcriptional regulator
SJPD1_1344	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
SJPD1_1351	COG0778	Nitroreductase
SJPD1_1357	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
SJPD1_1361	COG4145	pantothenate transmembrane transporter activity
SJPD1_1364	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
SJPD1_1367	COG0742	ribosomal rna small subunit methyltransferase
SJPD1_1369	COG1706	bacterial-type flagellum-dependent cell motility
SJPD1_1370	COG3951	Flagellar rod assembly protein muramidase FlgJ
SJPD1_1373	COG1256	bacterial-type flagellum assembly
SJPD1_1374	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
SJPD1_1376	COG0659	secondary active sulfate transmembrane transporter activity
SJPD1_1377	COG1942	4-Oxalocrotonate Tautomerase
SJPD1_1378	COG0356	it plays a direct role in the translocation of protons across the membrane
SJPD1_1381	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
SJPD1_1382	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
SJPD1_1383	COG1472	Belongs to the glycosyl hydrolase 3 family
SJPD1_1385	COG0101	tRNA pseudouridine synthase activity
SJPD1_1387	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
SJPD1_1390	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
SJPD1_1391	COG1338	Plays a role in the flagellum-specific transport system
SJPD1_1392	COG0676	glucose-6-phosphate 1-epimerase activity
SJPD1_1393	COG2249	NAD(P)H dehydrogenase (quinone) activity
SJPD1_1396	COG3174	membrane
SJPD1_1397	COG1032	radical SAM domain protein
SJPD1_1398	COG0166	Belongs to the GPI family
SJPD1_1402	COG3259	Nickel-dependent hydrogenase
SJPD1_1403	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
SJPD1_1404	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
SJPD1_1405	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
SJPD1_1406	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
SJPD1_1407	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
SJPD1_1408	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
SJPD1_1411	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
SJPD1_1412	COG0298	carbon dioxide binding
SJPD1_1413	COG0409	Hydrogenase expression formation protein
SJPD1_1414	COG0309	Hydrogenase expression formation protein (HypE)
SJPD1_1415	COG0375	protein maturation
SJPD1_1416	COG1247	-acetyltransferase
SJPD1_1417	COG0546	phosphoglycolate phosphatase activity
SJPD1_1421	COG0039	L-malate dehydrogenase activity
SJPD1_1422	COG0045	succinate-CoA ligase (ADP-forming) activity
SJPD1_1423	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
SJPD1_1425	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
SJPD1_1425	COG0674	pyruvate-flavodoxin oxidoreductase activity
SJPD1_1431	COG0114	fumarate hydratase activity
SJPD1_1436	COG1129	ABC transporter
SJPD1_1436	COG0842	Transport permease protein
SJPD1_1437	COG0842	Transport permease protein
SJPD1_1438	COG0842	Transport permease protein
SJPD1_1439	COG2095	MarC family integral membrane protein
SJPD1_1442	COG3706	GGDEF domain
SJPD1_1442	COG0745	RESPONSE REGULATOR receiver
SJPD1_1443	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
SJPD1_1444	COG0750	zinc metalloprotease
SJPD1_1445	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
SJPD1_1446	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_1447	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
SJPD1_1449	COG0167	dihydroorotate dehydrogenase activity
SJPD1_1450	COG1132	(ABC) transporter
SJPD1_1451	COG0215	cysteine-tRNA ligase activity
SJPD1_1452	COG0728	peptidoglycan biosynthetic process
SJPD1_1454	COG0632	four-way junction helicase activity
SJPD1_1455	COG1181	Belongs to the D-alanine--D-alanine ligase family
SJPD1_1458	COG1254	Belongs to the acylphosphatase family
SJPD1_1459	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
SJPD1_1460	COG0280	phosphate acetyltransferase
SJPD1_1460	COG0857	belongs to the CobB CobQ family
SJPD1_1461	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
SJPD1_1462	COG1610	YqeY-like protein
SJPD1_1474	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
SJPD1_1475	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
SJPD1_1478	COG0137	argininosuccinate synthase activity
SJPD1_1479	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
SJPD1_1480	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
SJPD1_1481	COG0802	atpase or kinase
SJPD1_1482	COG1137	ATPase activity
SJPD1_1483	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
SJPD1_1487	COG0582	viral genome integration into host DNA
SJPD1_1499	COG1053	succinate dehydrogenase
SJPD1_1507	COG3852	Histidine kinase
SJPD1_1511	COG0784	Response regulator, receiver
SJPD1_1511	COG4191	Histidine kinase
SJPD1_1515	COG3279	Response regulator of the LytR AlgR family
SJPD1_1517	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_1520	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
SJPD1_1522	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
SJPD1_1526	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
SJPD1_1530	COG1120	ATPase activity
SJPD1_1533	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
SJPD1_1537	COG2875	Belongs to the precorrin methyltransferase family
SJPD1_1542	COG1132	(ABC) transporter
SJPD1_1543	COG1797	cobyrinic acid a,c-diamide synthase activity
SJPD1_1544	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
SJPD1_1544	COG1648	precorrin-2 dehydrogenase activity
SJPD1_1566	COG0582	viral genome integration into host DNA
SJPD1_1568	COG0776	regulation of translation
SJPD1_1570	COG1196	nuclear chromosome segregation
SJPD1_1570	COG1674	ftsk spoiiie
SJPD1_1571	COG1049	propionate catabolic process, 2-methylcitrate cycle
SJPD1_1572	COG1047	Peptidyl-prolyl cis-trans
SJPD1_1573	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
SJPD1_1573	COG0574	Belongs to the PEP-utilizing enzyme family
SJPD1_1576	COG2814	Major facilitator Superfamily
SJPD1_1580	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
SJPD1_1581	COG0840	transmembrane signaling receptor activity
SJPD1_1582	COG1832	CoA-binding protein
SJPD1_1583	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
SJPD1_1585	COG1126	abc transporter atp-binding protein
SJPD1_1586	COG0765	amino acid transport
SJPD1_1587	COG4597	amino acid ABC transporter
SJPD1_1588	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_1589	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
SJPD1_1591	COG0586	Pfam SNARE associated Golgi protein
SJPD1_1592	COG0577	efflux transmembrane transporter activity
SJPD1_1592	COG1136	(ABC) transporter
SJPD1_1593	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
SJPD1_1597	COG0727	PFAM Uncharacterised protein family (UPF0153)
SJPD1_1599	COG0134	indole-3-glycerol-phosphate synthase activity
SJPD1_1601	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
SJPD1_1602	COG1122	ATPase activity
SJPD1_1605	COG0310	cobalt ion transport
SJPD1_1606	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
SJPD1_1607	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
SJPD1_1610	COG0446	pyridine nucleotide-disulphide oxidoreductase
SJPD1_1612	COG0028	Belongs to the TPP enzyme family
SJPD1_1613	COG0440	acetolactate synthase activity
SJPD1_1614	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
SJPD1_1616	COG0493	'glutamate synthase
SJPD1_1618	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
SJPD1_1624	COG1045	serine acetyltransferase
SJPD1_1625	COG1166	arginine decarboxylase activity
SJPD1_1626	COG0124	histidyl-tRNA synthetase
SJPD1_1629	COG0163	prenyltransferase activity
SJPD1_1633	COG0303	'Molybdopterin
SJPD1_1634	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
SJPD1_1637	COG1691	(AIR) carboxylase
SJPD1_1638	COG1606	tRNA processing
SJPD1_1639	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
SJPD1_1640	COG3875	lactate racemase activity
SJPD1_1641	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
SJPD1_1641	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
SJPD1_1643	COG0471	metal ion transport
SJPD1_1648	COG0745	RESPONSE REGULATOR receiver
SJPD1_1651	COG0588	phosphoglycerate mutase activity
SJPD1_1653	COG0582	viral genome integration into host DNA
SJPD1_1654	COG0343	queuine tRNA-ribosyltransferase activity
SJPD1_1656	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
SJPD1_1658	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
SJPD1_1659	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SJPD1_1663	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SJPD1_1664	COG1187	pseudouridine synthase activity
SJPD1_1666	COG0028	Belongs to the TPP enzyme family
SJPD1_1672	COG1309	transcriptional regulator
SJPD1_1679	COG0840	transmembrane signaling receptor activity
SJPD1_1679	COG3290	protein histidine kinase activity
SJPD1_1680	COG1592	Rubrerythrin
SJPD1_1682	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
SJPD1_1684	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
SJPD1_1684	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
SJPD1_1685	COG3030	protein affecting phage T7 exclusion by the F plasmid
SJPD1_1686	COG0442	prolyl-tRNA aminoacylation
SJPD1_1687	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
SJPD1_1688	COG0142	geranyltranstransferase activity
SJPD1_1692	COG1959	2 iron, 2 sulfur cluster binding
SJPD1_1694	COG3706	GGDEF domain
SJPD1_1695	COG0525	valine-tRNA ligase activity
SJPD1_1696	COG0521	Mo-molybdopterin cofactor biosynthetic process
SJPD1_1697	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
SJPD1_1698	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
SJPD1_1701	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
SJPD1_1702	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
SJPD1_1704	COG2195	Cleaves the N-terminal amino acid of tripeptides
SJPD1_1706	COG0500	methyltransferase
SJPD1_1709	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
SJPD1_1710	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
SJPD1_1711	COG1663	tetraacyldisaccharide 4'-kinase activity
SJPD1_1712	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
SJPD1_1713	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
SJPD1_1714	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
SJPD1_1716	COG4232	protein-disulfide reductase activity
SJPD1_1718	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
SJPD1_1719	COG0443	Heat shock 70 kDa protein
SJPD1_1720	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
SJPD1_1721	COG1420	regulation of RNA biosynthetic process
SJPD1_1724	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
SJPD1_1725	COG1959	2 iron, 2 sulfur cluster binding
SJPD1_1726	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
SJPD1_1727	COG2404	hydrolase activity, acting on ester bonds
SJPD1_1729	COG2226	methyltransferase
SJPD1_1730	COG2199	diguanylate cyclase activity
SJPD1_1730	COG2203	Gaf domain
SJPD1_1731	COG0196	riboflavin kinase activity
SJPD1_1732	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
SJPD1_1733	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
SJPD1_1734	COG0730	response to heat
SJPD1_1736	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
SJPD1_1739	COG0527	aspartate kinase activity
SJPD1_1740	COG0494	nUDIX hydrolase
SJPD1_1741	COG0635	Involved in the biosynthesis of porphyrin-containing compound
SJPD1_1743	COG0789	Transcriptional regulator
SJPD1_1744	COG0484	heat shock protein binding
SJPD1_1746	COG0745	RESPONSE REGULATOR receiver
SJPD1_1747	COG2205	protein histidine kinase activity
SJPD1_1750	COG0653	protein targeting
SJPD1_1751	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
SJPD1_1753	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
SJPD1_1754	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
SJPD1_1756	COG0706	membrane insertase activity
SJPD1_1757	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
SJPD1_1758	COG0230	Belongs to the bacterial ribosomal protein bL34 family
SJPD1_1761	COG4865	methylaspartate mutase activity
SJPD1_1763	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
SJPD1_1766	COG0542	response to heat
SJPD1_1767	COG0793	Belongs to the peptidase S41A family
SJPD1_1769	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
SJPD1_1770	COG0047	phosphoribosylformylglycinamidine synthase activity
SJPD1_1772	COG0204	Acyl-transferase
SJPD1_1773	COG0326	Molecular chaperone. Has ATPase activity
SJPD1_1775	COG1331	Highly conserved protein containing a thioredoxin domain
SJPD1_1776	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
SJPD1_1783	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
SJPD1_1786	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
SJPD1_1788	COG2608	mercury ion transmembrane transporter activity
SJPD1_1789	COG2217	Heavy metal translocating P-type atpase
SJPD1_1790	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
SJPD1_1793	COG0275	rRNA processing
SJPD1_1795	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
SJPD1_1796	COG0849	cell division
SJPD1_1797	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
SJPD1_1799	COG0220	tRNA (guanine-N7-)-methyltransferase activity
SJPD1_1799	COG2890	protein-(glutamine-N5) methyltransferase activity
SJPD1_1800	COG0501	Belongs to the peptidase M48B family
SJPD1_1804	COG0840	transmembrane signaling receptor activity
SJPD1_1806	COG2151	metal-sulfur cluster biosynthetic enzyme
SJPD1_1809	COG0138	bifunctional purine biosynthesis protein purh
SJPD1_1810	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
SJPD1_1812	COG1607	acyl-coa hydrolase
SJPD1_1813	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
SJPD1_1814	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
SJPD1_1817	COG1309	transcriptional regulator
SJPD1_1819	COG1566	PFAM secretion protein HlyD family protein
SJPD1_1820	COG2814	Major facilitator Superfamily
SJPD1_1821	COG0589	response to stress
SJPD1_1822	COG0842	Transport permease protein
SJPD1_1823	COG0842	Transport permease protein
SJPD1_1824	COG1131	(ABC) transporter
SJPD1_1825	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_1826	COG1309	transcriptional regulator
SJPD1_1827	COG0745	RESPONSE REGULATOR receiver
SJPD1_1827	COG3706	GGDEF domain
SJPD1_1829	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
SJPD1_1831	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
SJPD1_1832	COG0805	protein transport
SJPD1_1833	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
SJPD1_1836	COG3437	response regulator, receiver
SJPD1_1837	COG2205	protein histidine kinase activity
SJPD1_1837	COG4999	Histidine kinase
SJPD1_1837	COG3850	Histidine kinase
SJPD1_1837	COG3437	response regulator, receiver
SJPD1_1838	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
SJPD1_1842	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
SJPD1_1843	COG0569	domain protein
SJPD1_1844	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
SJPD1_1846	COG0406	alpha-ribazole phosphatase activity
SJPD1_1846	COG0328	RNA-DNA hybrid ribonuclease activity
SJPD1_1847	COG2068	MobA-Related Protein
SJPD1_1848	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
SJPD1_1848	COG3608	succinylglutamate desuccinylase aspartoacylase
SJPD1_1849	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
SJPD1_1850	COG0535	radical SAM domain protein
SJPD1_1852	COG2226	methyltransferase
SJPD1_1856	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
SJPD1_1856	COG2198	Histidine kinase
SJPD1_1856	COG2205	protein histidine kinase activity
SJPD1_1856	COG0784	Response regulator, receiver
SJPD1_1859	COG0840	transmembrane signaling receptor activity
SJPD1_1865	COG0646	methionine synthase
SJPD1_1865	COG1410	methionine synthase
SJPD1_1867	COG0683	leucine binding
SJPD1_1868	COG0840	transmembrane signaling receptor activity
SJPD1_1869	COG1280	lysine exporter protein (LysE YggA)
SJPD1_1873	COG0004	ammonium transporteR
SJPD1_1874	COG0347	Belongs to the P(II) protein family
SJPD1_1878	COG0751	glycine-tRNA ligase activity
SJPD1_1881	COG0288	reversible hydration of carbon dioxide
SJPD1_1882	COG3123	guanosine phosphorylase activity
SJPD1_1884	COG2081	HI0933 family
SJPD1_1886	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
SJPD1_1887	COG0788	formyltetrahydrofolate deformylase activity
SJPD1_1888	COG0617	tRNA 3'-terminal CCA addition
SJPD1_1891	COG0473	3-isopropylmalate dehydrogenase activity
SJPD1_1892	COG0066	3-isopropylmalate dehydratase activity
SJPD1_1897	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
SJPD1_1899	COG0708	Exodeoxyribonuclease III
SJPD1_1902	COG2816	NAD+ diphosphatase activity
SJPD1_1903	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
SJPD1_1904	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
SJPD1_1910	COG4977	sequence-specific DNA binding
SJPD1_1911	COG0431	NADPH-dependent FMN reductase
SJPD1_1912	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
SJPD1_1913	COG3706	GGDEF domain
SJPD1_1915	COG4895	conserved protein (DUF2196)
SJPD1_1919	COG0513	Belongs to the DEAD box helicase family
SJPD1_1922	COG0642	Histidine kinase
SJPD1_1923	COG0745	RESPONSE REGULATOR receiver
SJPD1_1930	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
SJPD1_1931	COG0372	Belongs to the citrate synthase family
SJPD1_1932	COG2079	MmgE PrpD family protein
SJPD1_1934	COG2824	Alkylphosphonate utilization operon protein PhnA
SJPD1_1936	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
SJPD1_1938	COG4786	Flagellar basal body rod
SJPD1_1939	COG4786	Flagellar basal body rod
SJPD1_1940	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
SJPD1_1942	COG1733	regulation of RNA biosynthetic process
SJPD1_1945	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
SJPD1_1946	COG1121	(ABC) transporter
SJPD1_1947	COG1108	ABC-type Mn2 Zn2 transport systems permease components
SJPD1_1950	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
SJPD1_1951	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
SJPD1_1952	COG3162	membrane
SJPD1_1953	COG0745	RESPONSE REGULATOR receiver
SJPD1_1957	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
SJPD1_1958	COG1918	ferrous iron import across plasma membrane
SJPD1_1962	COG0811	peptide transport
SJPD1_1963	COG0848	biopolymer transport protein
SJPD1_1972	COG3585	molybdate ion transport
SJPD1_1974	COG0598	Magnesium transport protein CorA
SJPD1_1975	COG0739	heme binding
SJPD1_1977	COG0277	FAD linked oxidase domain protein
SJPD1_1978	COG1295	ribonuclease BN
SJPD1_1980	COG0305	Participates in initiation and elongation during chromosome replication
SJPD1_1981	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
SJPD1_1982	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
SJPD1_1987	COG0556	nucleotide-excision repair
SJPD1_1990	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
SJPD1_1991	COG2176	DNA-directed DNA polymerase activity
SJPD1_1992	COG0135	phosphoribosylanthranilate isomerase activity
SJPD1_1993	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
SJPD1_1995	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
SJPD1_1998	COG1692	metallophosphoesterase
SJPD1_1999	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
SJPD1_2001	COG0739	heme binding
SJPD1_2002	COG0285	dihydrofolate synthase activity
SJPD1_2003	COG3706	GGDEF domain
SJPD1_2005	COG0495	leucyl-tRNA aminoacylation
SJPD1_2006	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SJPD1_2007	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
SJPD1_2008	COG1862	Preprotein translocase
SJPD1_2009	COG0815	Transfers the fatty acyl group on membrane lipoproteins
SJPD1_2010	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
SJPD1_2012	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
SJPD1_2014	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
SJPD1_2016	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
SJPD1_2017	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
SJPD1_2018	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
SJPD1_2019	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
SJPD1_2020	COG0210	DNA helicase
SJPD1_2026	COG0540	Belongs to the ATCase OTCase family
SJPD1_2028	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
SJPD1_2034	COG0336	Belongs to the RNA methyltransferase TrmD family
SJPD1_2036	COG1837	Belongs to the UPF0109 family
SJPD1_2037	COG0228	four-way junction DNA binding
SJPD1_2038	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
SJPD1_2039	COG0564	pseudouridine synthase activity
SJPD1_2040	COG1519	Transferase
SJPD1_2042	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
SJPD1_2043	COG0752	glycyl-tRNA synthetase alpha subunit
SJPD1_2045	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
SJPD1_2048	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
SJPD1_2049	COG0174	glutamine synthetase
SJPD1_2050	COG4499	WXG100 protein secretion system (Wss), protein YukC
SJPD1_2050	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
SJPD1_2051	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
SJPD1_2052	COG4172	Belongs to the ABC transporter superfamily
SJPD1_2053	COG0156	8-amino-7-oxononanoate synthase activity
SJPD1_2054	COG0424	maF-like protein
SJPD1_2056	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
SJPD1_2061	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_2063	COG0673	inositol 2-dehydrogenase activity
SJPD1_2064	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
SJPD1_2065	COG0768	penicillin binding
SJPD1_2066	COG1677	Flagellar hook-basal body complex protein FliE
SJPD1_2067	COG1558	bacterial-type flagellum-dependent cell motility
SJPD1_2068	COG1815	bacterial-type flagellum-dependent cell motility
SJPD1_2069	COG0772	Belongs to the SEDS family
SJPD1_2070	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
SJPD1_2073	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
SJPD1_2075	COG0697	spore germination
SJPD1_2083	COG0512	Glutamine amidotransferase of anthranilate synthase
SJPD1_2085	COG0667	Aldo Keto reductase
SJPD1_2087	COG1073	alpha beta
SJPD1_2089	COG0656	L-ascorbic acid biosynthetic process
SJPD1_2093	COG2814	Major facilitator Superfamily
SJPD1_2094	COG2207	Transcriptional regulator
SJPD1_2098	COG1979	alcohol dehydrogenase
SJPD1_2101	COG0025	NhaP-type Na H and K H
SJPD1_2103	COG4221	oxidoreductase activity
SJPD1_2105	COG1064	alcohol dehydrogenase
SJPD1_2106	COG0667	Aldo Keto reductase
SJPD1_2111	COG2814	Major facilitator Superfamily
SJPD1_2113	COG0640	Transcriptional regulator
SJPD1_2118	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
SJPD1_2120	COG2301	Belongs to the HpcH HpaI aldolase family
SJPD1_2121	COG3052	prosthetic group binding
SJPD1_2124	COG2814	Major facilitator Superfamily
SJPD1_2126	COG2252	PERMEase
SJPD1_2127	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
SJPD1_2128	COG0133	tryptophan synthase activity
SJPD1_2130	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
SJPD1_2131	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
SJPD1_2132	COG3706	GGDEF domain
SJPD1_2136	COG2200	EAL domain
SJPD1_2136	COG2202	Pas domain
SJPD1_2136	COG2199	diguanylate cyclase activity
SJPD1_2138	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SJPD1_2142	COG0488	(ABC) transporter
SJPD1_2143	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_2144	COG0651	ATP synthesis coupled electron transport
SJPD1_2145	COG0650	Formate hydrogenlyase subunit 4
SJPD1_2146	COG4237	Hydrogenase 4 membrane
SJPD1_2147	COG0651	ATP synthesis coupled electron transport
SJPD1_2148	COG3261	NADH dehydrogenase
SJPD1_2148	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
SJPD1_2150	COG3260	NADH ubiquinone oxidoreductase 20
SJPD1_2157	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
SJPD1_2158	COG3706	GGDEF domain
SJPD1_2158	COG0745	RESPONSE REGULATOR receiver
SJPD1_2160	COG2171	N-acyltransferase activity
SJPD1_2161	COG0489	protein tyrosine kinase activity
SJPD1_2162	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
SJPD1_2162	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
SJPD1_2164	COG2046	Belongs to the sulfate adenylyltransferase family
SJPD1_2166	COG2353	YceI-like domain
SJPD1_2167	COG1739	Uncharacterized protein family UPF0029
SJPD1_2169	COG4149	molybdate abc transporter
SJPD1_2171	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
SJPD1_2176	COG1686	Belongs to the peptidase S11 family
SJPD1_2177	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
SJPD1_2178	COG0577	efflux transmembrane transporter activity
SJPD1_2178	COG1136	(ABC) transporter
SJPD1_2179	COG0577	efflux transmembrane transporter activity
SJPD1_2179	COG1136	(ABC) transporter
SJPD1_2183	COG0668	transmembrane transport
SJPD1_2184	COG5001	Diguanylate cyclase
SJPD1_2184	COG3300	MHYT domain
SJPD1_2203	COG0284	orotidine-5'-phosphate decarboxylase activity
SJPD1_2204	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
SJPD1_2207	COG2877	3-deoxy-8-phosphooctulonate synthase activity
SJPD1_2208	COG0697	spore germination
SJPD1_2209	COG0668	transmembrane transport
SJPD1_2210	COG1160	GTP binding
SJPD1_2212	COG0180	Tryptophanyl-tRNA synthetase
SJPD1_2213	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
SJPD1_2215	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
SJPD1_2216	COG1183	phosphatidylcholine synthase activity
SJPD1_2218	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
SJPD1_2219	COG2264	protein methyltransferase activity
SJPD1_2221	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
SJPD1_2222	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
SJPD1_2225	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SJPD1_2233	COG0028	Belongs to the TPP enzyme family
SJPD1_2235	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
SJPD1_2238	COG1793	dna ligase
SJPD1_2240	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
SJPD1_2241	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
SJPD1_2246	COG0859	PFAM glycosyl transferase family 9
SJPD1_2248	COG1215	transferase activity, transferring glycosyl groups
SJPD1_2251	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
SJPD1_2252	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
SJPD1_2252	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
SJPD1_2253	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
SJPD1_2258	COG2217	Heavy metal translocating P-type atpase
SJPD1_2259	COG5001	Diguanylate cyclase
SJPD1_2259	COG5002	protein histidine kinase activity
SJPD1_2260	COG0697	spore germination
SJPD1_2262	COG3706	GGDEF domain
SJPD1_2262	COG0745	RESPONSE REGULATOR receiver
SJPD1_2267	COG0840	transmembrane signaling receptor activity
SJPD1_2268	COG1984	allophanate hydrolase subunit 2
SJPD1_2270	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
SJPD1_2271	COG0445	tRNA wobble uridine modification
SJPD1_2272	COG0723	plastoquinol--plastocyanin reductase activity
SJPD1_2273	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
SJPD1_2274	COG2857	Cytochrome c1
SJPD1_2276	COG0825	malonyl-CoA metabolic process
SJPD1_2277	COG0825	malonyl-CoA metabolic process
SJPD1_2278	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
SJPD1_2279	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
SJPD1_2281	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
SJPD1_2282	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
SJPD1_2283	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
SJPD1_2294	COG0582	viral genome integration into host DNA
SJPD1_2298	COG4191	Histidine kinase
SJPD1_2299	COG0745	RESPONSE REGULATOR receiver
SJPD1_2302	COG0398	Pfam SNARE associated Golgi protein
SJPD1_2303	COG4943	cyclic-guanylate-specific phosphodiesterase activity
SJPD1_2307	COG0390	transport system, permease component
SJPD1_2308	COG0439	Biotin carboxylase
SJPD1_2311	COG0513	Belongs to the DEAD box helicase family
SJPD1_2312	COG1671	Belongs to the UPF0178 family
SJPD1_2313	COG0667	Aldo Keto reductase
SJPD1_2314	COG2814	Major facilitator Superfamily
SJPD1_2315	COG2207	Transcriptional regulator
SJPD1_2319	COG0573	inorganic phosphate transmembrane transporter activity
SJPD1_2321	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
SJPD1_2322	COG3290	protein histidine kinase activity
SJPD1_2322	COG0840	transmembrane signaling receptor activity
SJPD1_2323	COG3384	dioxygenase
SJPD1_2327	COG0745	RESPONSE REGULATOR receiver
SJPD1_2328	COG5002	protein histidine kinase activity
SJPD1_2329	COG1607	acyl-coa hydrolase
SJPD1_2336	COG1733	regulation of RNA biosynthetic process
SJPD1_2337	COG2249	NAD(P)H dehydrogenase (quinone) activity
SJPD1_2338	COG2205	protein histidine kinase activity
SJPD1_2339	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
SJPD1_2340	COG0602	queuosine metabolic process
SJPD1_2347	COG1702	phosphate starvation-inducible protein PhoH
SJPD1_2348	COG0475	glutathione-regulated potassium exporter activity
SJPD1_2350	COG2814	Major facilitator Superfamily
SJPD1_2351	COG0477	Major facilitator Superfamily
SJPD1_2354	COG3787	Belongs to the UPF0306 family
SJPD1_2355	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
SJPD1_2361	COG1013	pyruvate-flavodoxin oxidoreductase activity
SJPD1_2361	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
SJPD1_2361	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
SJPD1_2361	COG0674	pyruvate-flavodoxin oxidoreductase activity
SJPD1_2363	COG0471	metal ion transport
SJPD1_2365	COG0668	transmembrane transport
SJPD1_2366	COG3047	cAMP biosynthetic process
SJPD1_2366	COG2885	chlorophyll binding
SJPD1_2368	COG1881	PFAM PEBP family protein
SJPD1_2369	COG2207	Transcriptional regulator
SJPD1_2370	COG0519	Catalyzes the synthesis of GMP from XMP
SJPD1_2374	COG1979	alcohol dehydrogenase
SJPD1_2376	COG0038	chloride channel
SJPD1_2377	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
SJPD1_2379	COG1324	tolerance protein
SJPD1_2381	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
SJPD1_2391	COG3278	Belongs to the heme-copper respiratory oxidase family
SJPD1_2392	COG0745	RESPONSE REGULATOR receiver
SJPD1_2393	COG3852	Histidine kinase
SJPD1_2395	COG0505	Belongs to the CarA family
SJPD1_2399	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
SJPD1_2400	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
SJPD1_2401	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
SJPD1_2404	COG0546	phosphoglycolate phosphatase activity
SJPD1_2407	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SJPD1_2408	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
SJPD1_2409	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
SJPD1_2410	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
SJPD1_2413	COG0203	ribosomal protein L17
SJPD1_2415	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
SJPD1_2416	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
SJPD1_2417	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
SJPD1_2419	COG0024	Methionine aminopeptidase
SJPD1_2420	COG0201	protein transport
SJPD1_2421	COG0200	Binds to the 23S rRNA
SJPD1_2423	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
SJPD1_2424	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
SJPD1_2425	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
SJPD1_2427	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
SJPD1_2428	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
SJPD1_2429	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
SJPD1_2430	COG0255	Belongs to the universal ribosomal protein uL29 family
SJPD1_2431	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
SJPD1_2432	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
SJPD1_2434	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
SJPD1_2435	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
SJPD1_2436	COG0089	rRNA binding
SJPD1_2437	COG0088	Forms part of the polypeptide exit tunnel
SJPD1_2438	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
SJPD1_2439	COG0051	transcription antitermination factor activity, RNA binding
SJPD1_2442	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
SJPD1_2444	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
SJPD1_2445	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
SJPD1_2446	COG0571	ribonuclease III activity
SJPD1_2447	COG0328	RNA-DNA hybrid ribonuclease activity
SJPD1_2449	COG0358	DNA primase activity
SJPD1_2450	COG0137	argininosuccinate synthase activity
SJPD1_2451	COG2201	protein-glutamate methylesterase activity
SJPD1_2454	COG0745	RESPONSE REGULATOR receiver
SJPD1_2455	COG2205	protein histidine kinase activity
SJPD1_2456	COG2201	protein-glutamate methylesterase activity
SJPD1_2457	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
SJPD1_2458	COG5002	protein histidine kinase activity
SJPD1_2460	COG0643	Histidine kinase
SJPD1_2460	COG2198	Histidine kinase
SJPD1_2462	COG0840	transmembrane signaling receptor activity
SJPD1_2463	COG0835	chemotaxis
SJPD1_2470	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
SJPD1_2471	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
SJPD1_2473	COG1280	lysine exporter protein (LysE YggA)
SJPD1_2474	COG1090	epimerase
SJPD1_2477	COG1136	(ABC) transporter
SJPD1_2477	COG0577	efflux transmembrane transporter activity
SJPD1_2483	COG2962	Rard protein
SJPD1_2485	COG5002	protein histidine kinase activity
SJPD1_2485	COG3850	Histidine kinase
SJPD1_2486	COG2194	sulfuric ester hydrolase activity
SJPD1_2488	COG2200	EAL domain
SJPD1_2491	COG1968	undecaprenyl-diphosphatase activity
SJPD1_2492	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
SJPD1_2493	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
SJPD1_2498	COG1027	Aspartate ammonia-lyase
SJPD1_2499	COG1027	Aspartate ammonia-lyase
SJPD1_2500	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
SJPD1_2501	COG0252	asparaginase activity
SJPD1_2502	COG4191	Histidine kinase
SJPD1_2503	COG0745	RESPONSE REGULATOR receiver
SJPD1_2504	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
SJPD1_2506	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
SJPD1_2507	COG0804	urea catabolic process
SJPD1_2508	COG0831	urea catabolic process
SJPD1_2508	COG0832	Belongs to the urease beta subunit family
SJPD1_2509	COG0829	nickel cation binding
SJPD1_2515	COG0784	Response regulator, receiver
SJPD1_2515	COG2205	protein histidine kinase activity
SJPD1_2519	COG0714	Associated with various cellular activities
SJPD1_2528	COG0765	amino acid transport
SJPD1_2535	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
SJPD1_2543	COG0709	Synthesizes selenophosphate from selenide and ATP
SJPD1_2544	COG0425	Belongs to the sulfur carrier protein TusA family
SJPD1_2546	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
SJPD1_2547	COG5002	protein histidine kinase activity
SJPD1_2547	COG3447	MASE1 domain protein
SJPD1_2547	COG5001	Diguanylate cyclase
SJPD1_2549	COG2814	Major facilitator Superfamily
SJPD1_2551	COG3839	Belongs to the ABC transporter superfamily
SJPD1_2552	COG4662	Binding-protein-dependent transport system inner membrane component
SJPD1_2553	COG2998	abc-type tungstate transport system, permease component
SJPD1_2555	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
SJPD1_2557	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_2562	COG1120	ATPase activity
SJPD1_2565	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
SJPD1_2568	COG0848	biopolymer transport protein
SJPD1_2569	COG0811	peptide transport
SJPD1_2574	COG0500	methyltransferase
SJPD1_2576	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
SJPD1_2577	COG4208	sulfate ABC transporter
SJPD1_2578	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
SJPD1_2579	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
SJPD1_2580	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
SJPD1_2584	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_2590	COG2205	protein histidine kinase activity
SJPD1_2592	COG1921	L-seryl-tRNASec selenium transferase activity
SJPD1_2597	COG1741	Belongs to the pirin family
SJPD1_2604	COG0745	RESPONSE REGULATOR receiver
SJPD1_2605	COG5002	protein histidine kinase activity
SJPD1_2605	COG5000	phosphorelay sensor kinase activity
SJPD1_2607	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
SJPD1_2608	COG0463	Glycosyl transferase, family 2
SJPD1_2610	COG1028	Short-chain dehydrogenase reductase Sdr
SJPD1_2621	COG0513	Belongs to the DEAD box helicase family
SJPD1_2627	COG1305	Transglutaminase-like
SJPD1_2634	COG0439	Biotin carboxylase
SJPD1_2637	COG3842	ATPase activity
SJPD1_2643	COG0745	RESPONSE REGULATOR receiver
SJPD1_2644	COG2205	protein histidine kinase activity
SJPD1_2645	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
SJPD1_2647	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
SJPD1_2650	COG0300	oxidoreductase activity
SJPD1_2653	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
SJPD1_2655	COG2814	Major facilitator Superfamily
SJPD1_2656	COG1238	metal cluster binding
SJPD1_2659	COG0471	metal ion transport
SJPD1_2662	COG0303	'Molybdopterin
SJPD1_2663	COG0314	molybdopterin synthase activity
SJPD1_2667	COG1157	protein secretion by the type III secretion system
SJPD1_2668	COG0302	gtp cyclohydrolase
SJPD1_2669	COG0544	peptidyl-prolyl cis-trans isomerase activity
SJPD1_2670	COG0740	serine-type endopeptidase activity
SJPD1_2673	COG0606	chelatase, subunit chli
SJPD1_2674	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
SJPD1_2674	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
SJPD1_2675	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
SJPD1_2676	COG2022	thiamine diphosphate biosynthetic process
SJPD1_2689	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
SJPD1_2690	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
SJPD1_2693	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
SJPD1_2705	COG0463	Glycosyl transferase, family 2
SJPD1_2708	COG0671	phosphoesterase, PA-phosphatase related
SJPD1_2710	COG1012	belongs to the aldehyde dehydrogenase family
SJPD1_2713	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
SJPD1_2718	COG0840	transmembrane signaling receptor activity
SJPD1_2719	COG2183	response to ionizing radiation
SJPD1_2723	COG0842	Transport permease protein
SJPD1_2724	COG0842	Transport permease protein
SJPD1_2725	COG1131	(ABC) transporter
SJPD1_2726	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_2728	COG1309	transcriptional regulator
SJPD1_2729	COG0778	Nitroreductase
SJPD1_2735	COG0577	efflux transmembrane transporter activity
SJPD1_2736	COG1136	(ABC) transporter
SJPD1_2738	COG1472	Belongs to the glycosyl hydrolase 3 family
SJPD1_2744	COG0431	NADPH-dependent FMN reductase
SJPD1_2746	COG0300	oxidoreductase activity
SJPD1_2748	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
SJPD1_2749	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
SJPD1_2755	COG0642	Histidine kinase
SJPD1_2757	COG0175	sulfate reduction
SJPD1_2758	COG0175	sulfate reduction
SJPD1_2759	COG2895	sulfate adenylyltransferase (ATP) activity
SJPD1_2761	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
SJPD1_2763	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
SJPD1_2764	COG1648	precorrin-2 dehydrogenase activity
SJPD1_2764	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
SJPD1_2765	COG0626	cystathionine gamma-synthase activity
SJPD1_2767	COG0482	sulfurtransferase activity
SJPD1_2771	COG3706	GGDEF domain
SJPD1_2773	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
SJPD1_2775	COG0861	Integral membrane protein TerC family
SJPD1_2776	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
SJPD1_2777	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
SJPD1_2778	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
SJPD1_2779	COG0281	malic enzyme
SJPD1_2779	COG0280	phosphate acetyltransferase
SJPD1_2780	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
SJPD1_2782	COG0439	Biotin carboxylase
SJPD1_2783	COG0511	ligase activity, forming carbon-carbon bonds
SJPD1_2784	COG0717	Belongs to the dCTP deaminase family
SJPD1_2788	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
SJPD1_2789	COG1073	alpha beta
SJPD1_2792	COG1086	Polysaccharide biosynthesis protein
SJPD1_2793	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
SJPD1_2794	COG1083	cytidylyl-transferase
SJPD1_2796	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
SJPD1_2797	COG2089	acid synthase
SJPD1_2798	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
SJPD1_2800	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
SJPD1_2801	COG0107	imidazoleglycerol-phosphate synthase activity
SJPD1_2803	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
SJPD1_2803	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
SJPD1_2804	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
SJPD1_2805	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
SJPD1_2806	COG0372	Belongs to the citrate synthase family
SJPD1_2809	COG0148	phosphopyruvate hydratase activity
SJPD1_2810	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
SJPD1_2811	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
SJPD1_2813	COG0812	UDP-N-acetylmuramate dehydrogenase activity
SJPD1_2815	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
SJPD1_2821	COG1408	metallophosphoesterase
SJPD1_2822	COG1115	amino acid carrier protein
SJPD1_2823	COG2233	PERMEase
SJPD1_2824	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
SJPD1_2825	COG0575	Belongs to the CDS family
SJPD1_2828	COG1929	Belongs to the glycerate kinase type-1 family
SJPD1_2832	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
SJPD1_2834	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
SJPD1_2835	COG0746	molybdenum cofactor guanylyltransferase activity
SJPD1_2841	COG0724	RNA recognition motif
SJPD1_2842	COG0315	cyclic pyranopterin monophosphate synthase activity
SJPD1_2843	COG2921	Belongs to the UPF0250 family
SJPD1_2860	COG0670	Belongs to the BI1 family
SJPD1_2870	COG0437	4 iron, 4 sulfur cluster binding
SJPD1_2871	COG0243	molybdopterin cofactor binding
SJPD1_2872	COG4106	trans-aconitate 2-methyltransferase activity
SJPD1_2873	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
SJPD1_2884	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
SJPD1_2886	COG0233	cytoplasmic translational termination
SJPD1_2887	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
SJPD1_2892	COG1704	LemA family
SJPD1_2895	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
SJPD1_2896	COG1749	Flagellar hook protein flgE
SJPD1_2897	COG1749	Flagellar hook protein flgE
SJPD1_2898	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
SJPD1_2899	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group