SJPD1_0001 SM00382 ATPases associated with a variety of cellular activities SJPD1_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain SJPD1_0002 SM00480 DNA polymerase III beta subunit SJPD1_0003 SM00387 Histidine kinase-like ATPases SJPD1_0003 SM00433 TopoisomeraseII SJPD1_0004 SM00052 Putative diguanylate phosphodiesterase SJPD1_0004 SM00267 diguanylate cyclase SJPD1_0007 SM00986 Uracil DNA glycosylase superfamily SJPD1_0007 SM00987 UreE urease accessory protein, C-terminal domain SJPD1_0008 SM00478 endonuclease III SJPD1_0008 SM00525 SJPD1_0008 SJPD1_0013 SM00345 helix_turn_helix gluconate operon transcriptional repressor SJPD1_0013 SM00895 SJPD1_0013 SJPD1_0017 SM00671 Sel1-like repeats. SJPD1_0019 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0027 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_0027 SM00871 Bacterial transcription activator, effector binding domain SJPD1_0030 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0036 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_0040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0041 SM01235 SJPD1_0041 SJPD1_0052 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0068 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0088 SM00998 Adenylosuccinate lyase C-terminus SJPD1_0095 SM00650 Ribosomal RNA adenine dimethylases SJPD1_0096 SM00849 Metallo-beta-lactamase superfamily SJPD1_0097 SM00116 Domain in cystathionine beta-synthase and other proteins. SJPD1_0098 SM00363 S4 RNA-binding domain SJPD1_0099 SM00382 ATPases associated with a variety of cellular activities SJPD1_0107 SM00047 Lysozyme subfamily 2 SJPD1_0108 SM00937 SJPD1_0108 SJPD1_0113 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SJPD1_0132 SM00387 Histidine kinase-like ATPases SJPD1_0132 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0133 SM00448 cheY-homologous receiver domain SJPD1_0133 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0137 SM00382 ATPases associated with a variety of cellular activities SJPD1_0142 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_0142 SM01049 SJPD1_0142 SJPD1_0144 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_0148 SM00387 Histidine kinase-like ATPases SJPD1_0149 SM00448 cheY-homologous receiver domain SJPD1_0151 SM00938 Nitrogen regulatory protein P-II SJPD1_0155 SM00448 cheY-homologous receiver domain SJPD1_0155 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0156 SM00387 Histidine kinase-like ATPases SJPD1_0159 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_0159 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SJPD1_0160 SM00382 ATPases associated with a variety of cellular activities SJPD1_0166 SM00518 AP endonuclease family 2 SJPD1_0169 SM00382 ATPases associated with a variety of cellular activities SJPD1_0176 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SJPD1_0190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0192 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0193 SM00852 Probable molybdopterin binding domain SJPD1_0198 SM00967 RNA 2'-O ribose methyltransferase substrate binding SJPD1_0208 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0212 SM00244 prohibitin homologues SJPD1_0217 SM00387 Histidine kinase-like ATPases SJPD1_0217 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0218 SM00448 cheY-homologous receiver domain SJPD1_0218 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0223 SM00382 ATPases associated with a variety of cellular activities SJPD1_0223 SM00994 ClpX C4-type zinc finger SJPD1_0223 SM01086 C-terminal, D2-small domain, of ClpB protein SJPD1_0226 SM00851 MGS-like domain SJPD1_0226 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SJPD1_0229 SM00507 HNH nucleases SJPD1_0234 SM00859 Semialdehyde dehydrogenase, NAD binding domain SJPD1_0236 SM00260 Two component signalling adaptor domain SJPD1_0236 SM00448 cheY-homologous receiver domain SJPD1_0237 SM00073 Histidine Phosphotransfer domain SJPD1_0237 SM00260 Two component signalling adaptor domain SJPD1_0237 SM00387 Histidine kinase-like ATPases SJPD1_0237 SM01231 SJPD1_0237 SJPD1_0238 SM00448 cheY-homologous receiver domain SJPD1_0239 SM00260 Two component signalling adaptor domain SJPD1_0247 SM00382 ATPases associated with a variety of cellular activities SJPD1_0252 SM00830 Chorismate mutase type II SJPD1_0257 SM00861 Transketolase, pyrimidine binding domain SJPD1_0260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_0262 SM00562 SJPD1_0262 SJPD1_0270 SM00327 von Willebrand factor (vWF) type A domain SJPD1_0271 SM00028 Tetratricopeptide repeats SJPD1_0271 SM00327 von Willebrand factor (vWF) type A domain SJPD1_0277 SM00387 Histidine kinase-like ATPases SJPD1_0277 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0278 SM00448 cheY-homologous receiver domain SJPD1_0278 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0279 SM00905 Dihydroneopterin aldolase SJPD1_0280 SM01207 SJPD1_0280 SJPD1_0281 SM01207 SJPD1_0281 SJPD1_0297 SM00052 Putative diguanylate phosphodiesterase SJPD1_0297 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0297 SM00267 diguanylate cyclase SJPD1_0298 SM00357 Cold shock protein domain SJPD1_0299 SM00387 Histidine kinase-like ATPases SJPD1_0299 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0300 SM00448 cheY-homologous receiver domain SJPD1_0300 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0304 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0305 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0308 SM00052 Putative diguanylate phosphodiesterase SJPD1_0308 SM00267 diguanylate cyclase SJPD1_0308 SM00897 FIST N domain SJPD1_0308 SM01204 SJPD1_0308 SJPD1_0309 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0312 SM00448 cheY-homologous receiver domain SJPD1_0312 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0313 SM00387 Histidine kinase-like ATPases SJPD1_0313 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0315 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0322 SM01131 SJPD1_0322 SJPD1_0329 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_0329 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SJPD1_0329 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0329 SM00091 PAS domain SJPD1_0329 SM00267 diguanylate cyclase SJPD1_0332 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_0343 SM00382 ATPases associated with a variety of cellular activities SJPD1_0343 SM00962 SRP54-type protein, GTPase domain SJPD1_0357 SM01400 SJPD1_0357 SJPD1_0362 SM01321 SJPD1_0362 SJPD1_0363 SM00434 DNA Topoisomerase IV SJPD1_0366 SM00382 ATPases associated with a variety of cellular activities SJPD1_0366 SM00448 cheY-homologous receiver domain SJPD1_0367 SM00859 Semialdehyde dehydrogenase, NAD binding domain SJPD1_0380 SM00487 DEAD-like helicases superfamily SJPD1_0381 SM00974 SJPD1_0381 SJPD1_0382 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0387 SM00857 Resolvase, N terminal domain SJPD1_0389 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0393 SM00382 ATPases associated with a variety of cellular activities SJPD1_0393 SM00930 SJPD1_0393 SJPD1_0400 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_0409 SM00052 Putative diguanylate phosphodiesterase SJPD1_0409 SM00267 diguanylate cyclase SJPD1_0424 SM00382 ATPases associated with a variety of cellular activities SJPD1_0425 SM00382 ATPases associated with a variety of cellular activities SJPD1_0435 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SJPD1_0435 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SJPD1_0436 SM00649 Ribosomal protein L11/L12 SJPD1_0441 SM00663 RNA polymerase I subunit A N-terminus SJPD1_0444 SM00838 Elongation factor G C-terminus SJPD1_0444 SM00889 Elongation factor G, domain IV SJPD1_0455 SM00448 cheY-homologous receiver domain SJPD1_0455 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0457 SM00387 Histidine kinase-like ATPases SJPD1_0458 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0461 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SJPD1_0470 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0470 SM00267 diguanylate cyclase SJPD1_0471 SM00091 PAS domain SJPD1_0474 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SJPD1_0481 SM01005 Alanine racemase, C-terminal domain SJPD1_0482 SM00267 diguanylate cyclase SJPD1_0487 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0493 SM01004 Delta-aminolevulinic acid dehydratase SJPD1_0496 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0498 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_0498 SM00267 diguanylate cyclase SJPD1_0501 SM00100 Cyclic nucleotide-monophosphate binding domain SJPD1_0501 SM00419 helix_turn_helix, cAMP Regulatory protein SJPD1_0503 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0503 SM00091 PAS domain SJPD1_0503 SM00267 diguanylate cyclase SJPD1_0503 SM01079 SJPD1_0503 SJPD1_0512 SM00382 ATPases associated with a variety of cellular activities SJPD1_0520 SM00382 ATPases associated with a variety of cellular activities SJPD1_0523 SM00072 Guanylate kinase homologues. SJPD1_0525 SM00836 DALR anticodon binding domain SJPD1_0525 SM01016 Arginyl tRNA synthetase N terminal dom SJPD1_0526 SM00477 DNA/RNA non-specific endonuclease SJPD1_0526 SM00892 DNA/RNA non-specific endonuclease SJPD1_0527 SM00052 Putative diguanylate phosphodiesterase SJPD1_0527 SM00267 diguanylate cyclase SJPD1_0531 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SJPD1_0539 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0545 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_0547 SM00937 SJPD1_0547 SJPD1_0552 SM00382 ATPases associated with a variety of cellular activities SJPD1_0553 SM00357 Cold shock protein domain SJPD1_0553 SM00382 ATPases associated with a variety of cellular activities SJPD1_0553 SM00959 Rho termination factor, N-terminal domain SJPD1_0555 SM00052 Putative diguanylate phosphodiesterase SJPD1_0555 SM00091 PAS domain SJPD1_0555 SM00267 diguanylate cyclase SJPD1_0567 SM00487 DEAD-like helicases superfamily SJPD1_0567 SM00490 helicase superfamily c-terminal domain SJPD1_0571 SM00387 Histidine kinase-like ATPases SJPD1_0571 SM01049 SJPD1_0571 SJPD1_0572 SM00448 cheY-homologous receiver domain SJPD1_0572 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0579 SM00382 ATPases associated with a variety of cellular activities SJPD1_0580 SM00382 ATPases associated with a variety of cellular activities SJPD1_0593 SM00116 Domain in cystathionine beta-synthase and other proteins. SJPD1_0593 SM01240 SJPD1_0593 SJPD1_0601 SM00463 Small MutS-related domain SJPD1_0601 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SJPD1_0601 SM00534 ATPase domain of DNA mismatch repair MUTS family SJPD1_0608 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SJPD1_0608 SM00245 tail specific protease SJPD1_0619 SM00470 ParB-like nuclease domain SJPD1_0625 SM00382 ATPases associated with a variety of cellular activities SJPD1_0635 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SJPD1_0662 SM00825 Beta-ketoacyl synthase SJPD1_0664 SM00822 SJPD1_0664 SJPD1_0665 SM00347 helix_turn_helix multiple antibiotic resistance protein SJPD1_0676 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SJPD1_0676 SM00474 3'-5' exonuclease SJPD1_0676 SM00475 5'-3' exonuclease SJPD1_0676 SM00482 DNA polymerase A domain SJPD1_0679 SM00271 DnaJ molecular chaperone homology domain SJPD1_0681 SM00448 cheY-homologous receiver domain SJPD1_0681 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0682 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_0682 SM00387 Histidine kinase-like ATPases SJPD1_0684 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0684 SM00091 PAS domain SJPD1_0684 SM00267 diguanylate cyclase SJPD1_0685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_0695 SM00267 diguanylate cyclase SJPD1_0696 SM00382 ATPases associated with a variety of cellular activities SJPD1_0703 SM00448 cheY-homologous receiver domain SJPD1_0704 SM00387 Histidine kinase-like ATPases SJPD1_0704 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0704 SM00448 cheY-homologous receiver domain SJPD1_0705 SM00671 Sel1-like repeats. SJPD1_0707 SM00465 GIY-YIG type nucleases (URI domain) SJPD1_0714 SM01209 SJPD1_0714 SJPD1_0714 SM01210 SJPD1_0714 SJPD1_0717 SM00316 Ribosomal protein S1-like RNA-binding domain SJPD1_0717 SM00322 K homology RNA-binding domain SJPD1_0727 SM00874 tRNA synthetase B5 domain SJPD1_0727 SM00896 Ferredoxin-fold anticodon binding domain SJPD1_0730 SM00316 Ribosomal protein S1-like RNA-binding domain SJPD1_0739 SM00841 Elongation factor P, C-terminal SJPD1_0739 SM01185 SJPD1_0739 SJPD1_0740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_0740 SM01358 SJPD1_0740 SJPD1_0742 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0743 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SJPD1_0743 SM00534 ATPase domain of DNA mismatch repair MUTS family SJPD1_0746 SM00316 Ribosomal protein S1-like RNA-binding domain SJPD1_0748 SM00267 diguanylate cyclase SJPD1_0778 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0778 SM01049 SJPD1_0778 SJPD1_0780 SM00481 DNA polymerase alpha chain like domain SJPD1_0781 SM00387 Histidine kinase-like ATPases SJPD1_0781 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_0789 SM00363 S4 RNA-binding domain SJPD1_0790 SM00060 Fibronectin type 3 domain SJPD1_0792 SM00382 ATPases associated with a variety of cellular activities SJPD1_0797 SM01409 SJPD1_0797 SJPD1_0798 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_0798 SM00954 Region found in RelA / SpoT proteins SJPD1_0799 SM00363 S4 RNA-binding domain SJPD1_0801 SM00646 SJPD1_0801 SJPD1_0802 SM00852 Probable molybdopterin binding domain SJPD1_0805 SM00267 diguanylate cyclase SJPD1_0808 SM00382 ATPases associated with a variety of cellular activities SJPD1_0809 SM00267 diguanylate cyclase SJPD1_0809 SM00448 cheY-homologous receiver domain SJPD1_0811 SM00257 Lysin motif SJPD1_0833 SM00845 GatB domain SJPD1_0837 SM00912 haemagglutination activity domain SJPD1_0844 SM00100 Cyclic nucleotide-monophosphate binding domain SJPD1_0844 SM00419 helix_turn_helix, cAMP Regulatory protein SJPD1_0849 SM00419 helix_turn_helix, cAMP Regulatory protein SJPD1_0855 SM00450 Rhodanese Homology Domain SJPD1_0863 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_0871 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SJPD1_0874 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0879 SM00320 WD40 repeats SJPD1_0881 SM00091 PAS domain SJPD1_0893 SM00450 Rhodanese Homology Domain SJPD1_0895 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_0898 SM00448 cheY-homologous receiver domain SJPD1_0898 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0900 SM00387 Histidine kinase-like ATPases SJPD1_0901 SM00387 Histidine kinase-like ATPases SJPD1_0902 SM00448 cheY-homologous receiver domain SJPD1_0902 SM00862 Transcriptional regulatory protein, C terminal SJPD1_0910 SM00052 Putative diguanylate phosphodiesterase SJPD1_0910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0910 SM00091 PAS domain SJPD1_0910 SM00448 cheY-homologous receiver domain SJPD1_0912 SM00487 DEAD-like helicases superfamily SJPD1_0912 SM00490 helicase superfamily c-terminal domain SJPD1_0916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0921 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_0921 SM00091 PAS domain SJPD1_0921 SM00448 cheY-homologous receiver domain SJPD1_0921 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_0922 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_0923 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0932 SM00883 Chaperonin 10 Kd subunit SJPD1_0952 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0965 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_0973 SM00487 DEAD-like helicases superfamily SJPD1_0973 SM00490 helicase superfamily c-terminal domain SJPD1_0989 SM00382 ATPases associated with a variety of cellular activities SJPD1_0993 SM00382 ATPases associated with a variety of cellular activities SJPD1_0998 SM00710 Parallel beta-helix repeats SJPD1_1001 SM00091 PAS domain SJPD1_1001 SM00387 Histidine kinase-like ATPases SJPD1_1002 SM00448 cheY-homologous receiver domain SJPD1_1002 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1009 SM00052 Putative diguanylate phosphodiesterase SJPD1_1010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1012 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_1021 SM00448 cheY-homologous receiver domain SJPD1_1022 SM00387 Histidine kinase-like ATPases SJPD1_1068 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1069 SM00387 Histidine kinase-like ATPases SJPD1_1076 SM00671 Sel1-like repeats. SJPD1_1080 SM00382 ATPases associated with a variety of cellular activities SJPD1_1084 SM00052 Putative diguanylate phosphodiesterase SJPD1_1084 SM00267 diguanylate cyclase SJPD1_1084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1085 SM00460 Transglutaminase/protease-like homologues SJPD1_1087 SM00460 Transglutaminase/protease-like homologues SJPD1_1090 SM00460 Transglutaminase/protease-like homologues SJPD1_1097 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1099 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SJPD1_1103 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_1104 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1104 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1113 SM00100 Cyclic nucleotide-monophosphate binding domain SJPD1_1113 SM00116 Domain in cystathionine beta-synthase and other proteins. SJPD1_1114 SM00479 SJPD1_1114 SJPD1_1125 SM00138 Methyltransferase, chemotaxis proteins SJPD1_1143 SM00487 DEAD-like helicases superfamily SJPD1_1143 SM00490 helicase superfamily c-terminal domain SJPD1_1148 SM00237 Domains in Na-Ca exchangers and integrin-beta4 SJPD1_1151 SM00382 ATPases associated with a variety of cellular activities SJPD1_1151 SM00464 Found in ATP-dependent protease La (LON) SJPD1_1156 SM00955 SJPD1_1156 SJPD1_1167 SM00732 Likely ribonuclease with RNase H fold. SJPD1_1174 SM00382 ATPases associated with a variety of cellular activities SJPD1_1175 SM00382 ATPases associated with a variety of cellular activities SJPD1_1175 SM00962 SRP54-type protein, GTPase domain SJPD1_1177 SM00322 K homology RNA-binding domain SJPD1_1177 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1178 SM00382 ATPases associated with a variety of cellular activities SJPD1_1185 SM00091 PAS domain SJPD1_1185 SM00448 cheY-homologous receiver domain SJPD1_1186 SM00448 cheY-homologous receiver domain SJPD1_1186 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1187 SM00052 Putative diguanylate phosphodiesterase SJPD1_1187 SM00267 diguanylate cyclase SJPD1_1187 SM00448 cheY-homologous receiver domain SJPD1_1188 SM00387 Histidine kinase-like ATPases SJPD1_1189 SM00387 Histidine kinase-like ATPases SJPD1_1190 SM00897 FIST N domain SJPD1_1190 SM01204 SJPD1_1190 SJPD1_1195 SM00318 Staphylococcal nuclease homologues SJPD1_1202 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1202 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1204 SM00867 YceI-like domain SJPD1_1207 SM00382 ATPases associated with a variety of cellular activities SJPD1_1209 SM00479 SJPD1_1209 SJPD1_1212 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_1214 SM00052 Putative diguanylate phosphodiesterase SJPD1_1214 SM00267 diguanylate cyclase SJPD1_1223 SM00986 Uracil DNA glycosylase superfamily SJPD1_1223 SM00987 UreE urease accessory protein, C-terminal domain SJPD1_1224 SM00364 Leucine-rich repeats, bacterial type SJPD1_1224 SM00365 Leucine-rich repeat, SDS22-like subfamily SJPD1_1224 SM00369 Leucine-rich repeats, typical (most populated) subfamily SJPD1_1227 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_1228 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SJPD1_1228 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1229 SM00448 cheY-homologous receiver domain SJPD1_1229 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1230 SM00052 Putative diguanylate phosphodiesterase SJPD1_1230 SM00267 diguanylate cyclase SJPD1_1230 SM00448 cheY-homologous receiver domain SJPD1_1231 SM00387 Histidine kinase-like ATPases SJPD1_1231 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1232 SM00448 cheY-homologous receiver domain SJPD1_1233 SM00849 Metallo-beta-lactamase superfamily SJPD1_1242 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1244 SM00260 Two component signalling adaptor domain SJPD1_1259 SM00052 Putative diguanylate phosphodiesterase SJPD1_1259 SM00267 diguanylate cyclase SJPD1_1262 SM00880 SJPD1_1262 SJPD1_1267 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_1267 SM00871 Bacterial transcription activator, effector binding domain SJPD1_1273 SM00267 diguanylate cyclase SJPD1_1277 SM00345 helix_turn_helix gluconate operon transcriptional repressor SJPD1_1279 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1279 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1289 SM00387 Histidine kinase-like ATPases SJPD1_1289 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1290 SM00448 cheY-homologous receiver domain SJPD1_1290 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1296 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1309 SM00347 helix_turn_helix multiple antibiotic resistance protein SJPD1_1318 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SJPD1_1318 SM00382 ATPases associated with a variety of cellular activities SJPD1_1326 SM00052 Putative diguanylate phosphodiesterase SJPD1_1326 SM00091 PAS domain SJPD1_1326 SM00267 diguanylate cyclase SJPD1_1326 SM01049 SJPD1_1326 SJPD1_1327 SM00530 Helix-turn-helix XRE-family like proteins SJPD1_1328 SM00267 diguanylate cyclase SJPD1_1333 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1334 SM00849 Metallo-beta-lactamase superfamily SJPD1_1336 SM00382 ATPases associated with a variety of cellular activities SJPD1_1344 SM00822 SJPD1_1344 SJPD1_1381 SM00845 GatB domain SJPD1_1397 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_1423 SM00881 CoA binding domain SJPD1_1433 SM00248 ankyrin repeats SJPD1_1436 SM00382 ATPases associated with a variety of cellular activities SJPD1_1442 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_1442 SM00267 diguanylate cyclase SJPD1_1444 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SJPD1_1447 SM01130 SJPD1_1447 SJPD1_1450 SM00382 ATPases associated with a variety of cellular activities SJPD1_1454 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SJPD1_1466 SM00382 ATPases associated with a variety of cellular activities SJPD1_1468 SM00382 ATPases associated with a variety of cellular activities SJPD1_1474 SM00382 ATPases associated with a variety of cellular activities SJPD1_1474 SM01086 C-terminal, D2-small domain, of ClpB protein SJPD1_1477 SM00450 Rhodanese Homology Domain SJPD1_1479 SM00363 S4 RNA-binding domain SJPD1_1482 SM00382 ATPases associated with a variety of cellular activities SJPD1_1484 SM00271 DnaJ molecular chaperone homology domain SJPD1_1492 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1492 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1493 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1495 SM00387 Histidine kinase-like ATPases SJPD1_1496 SM00448 cheY-homologous receiver domain SJPD1_1496 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1507 SM00387 Histidine kinase-like ATPases SJPD1_1507 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1508 SM00448 cheY-homologous receiver domain SJPD1_1508 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1511 SM00387 Histidine kinase-like ATPases SJPD1_1512 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1515 SM00448 cheY-homologous receiver domain SJPD1_1527 SM00855 Phosphoglycerate mutase family SJPD1_1530 SM00382 ATPases associated with a variety of cellular activities SJPD1_1542 SM00382 ATPases associated with a variety of cellular activities SJPD1_1568 SM00411 bacterial (prokaryotic) histone like domain SJPD1_1570 SM00382 ATPases associated with a variety of cellular activities SJPD1_1570 SM00843 SJPD1_1570 SJPD1_1575 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_1578 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_1581 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1581 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1582 SM00881 CoA binding domain SJPD1_1585 SM00382 ATPases associated with a variety of cellular activities SJPD1_1588 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_1590 SM00271 DnaJ molecular chaperone homology domain SJPD1_1592 SM00382 ATPases associated with a variety of cellular activities SJPD1_1601 SM00450 Rhodanese Homology Domain SJPD1_1602 SM00382 ATPases associated with a variety of cellular activities SJPD1_1619 SM00382 ATPases associated with a variety of cellular activities SJPD1_1632 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1632 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1633 SM00852 Probable molybdopterin binding domain SJPD1_1637 SM01001 AIR carboxylase SJPD1_1647 SM00387 Histidine kinase-like ATPases SJPD1_1648 SM00448 cheY-homologous receiver domain SJPD1_1648 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1651 SM00855 Phosphoglycerate mutase family SJPD1_1658 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_1659 SM00382 ATPases associated with a variety of cellular activities SJPD1_1670 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_1679 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1679 SM00897 FIST N domain SJPD1_1679 SM01204 SJPD1_1679 SJPD1_1694 SM00267 diguanylate cyclase SJPD1_1696 SM00852 Probable molybdopterin binding domain SJPD1_1702 SM00478 endonuclease III SJPD1_1702 SM00525 SJPD1_1702 SJPD1_1708 SM00849 Metallo-beta-lactamase superfamily SJPD1_1718 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1724 SM01387 SJPD1_1724 SJPD1_1730 SM00267 diguanylate cyclase SJPD1_1731 SM00904 Riboflavin kinase SJPD1_1732 SM00363 S4 RNA-binding domain SJPD1_1733 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SJPD1_1733 SM00292 breast cancer carboxy-terminal domain SJPD1_1733 SM00532 Ligase N family SJPD1_1741 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_1743 SM00422 helix_turn_helix, mercury resistance SJPD1_1744 SM00271 DnaJ molecular chaperone homology domain SJPD1_1745 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SJPD1_1746 SM00448 cheY-homologous receiver domain SJPD1_1746 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1747 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1747 SM00387 Histidine kinase-like ATPases SJPD1_1747 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1750 SM00957 SecA DEAD-like domain SJPD1_1750 SM00958 SecA preprotein cross-linking domain SJPD1_1752 SM00052 Putative diguanylate phosphodiesterase SJPD1_1752 SM00267 diguanylate cyclase SJPD1_1755 SM01245 SJPD1_1755 SJPD1_1757 SM01234 SJPD1_1757 SJPD1_1766 SM00382 ATPases associated with a variety of cellular activities SJPD1_1766 SM01086 C-terminal, D2-small domain, of ClpB protein SJPD1_1767 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SJPD1_1767 SM00245 tail specific protease SJPD1_1770 SM01211 SJPD1_1770 SJPD1_1772 SM00563 Phosphate acyltransferases SJPD1_1773 SM00387 Histidine kinase-like ATPases SJPD1_1774 SM00507 HNH nucleases SJPD1_1776 SM00450 Rhodanese Homology Domain SJPD1_1780 SM00382 ATPases associated with a variety of cellular activities SJPD1_1790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1796 SM00842 Cell division protein FtsA SJPD1_1797 SM00864 Tubulin/FtsZ family, GTPase domain SJPD1_1797 SM00865 Tubulin/FtsZ family, C-terminal domain SJPD1_1802 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1803 SM00382 ATPases associated with a variety of cellular activities SJPD1_1804 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1804 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1809 SM00798 AICARFT/IMPCHase bienzyme SJPD1_1809 SM00851 MGS-like domain SJPD1_1813 SM00271 DnaJ molecular chaperone homology domain SJPD1_1824 SM00382 ATPases associated with a variety of cellular activities SJPD1_1827 SM00267 diguanylate cyclase SJPD1_1830 SM00052 Putative diguanylate phosphodiesterase SJPD1_1830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_1830 SM00091 PAS domain SJPD1_1830 SM00267 diguanylate cyclase SJPD1_1836 SM00448 cheY-homologous receiver domain SJPD1_1836 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1837 SM00387 Histidine kinase-like ATPases SJPD1_1837 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1837 SM00448 cheY-homologous receiver domain SJPD1_1838 SM00849 Metallo-beta-lactamase superfamily SJPD1_1838 SM01027 Beta-Casp domain SJPD1_1846 SM00855 Phosphoglycerate mutase family SJPD1_1850 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_1855 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SJPD1_1856 SM00387 Histidine kinase-like ATPases SJPD1_1856 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1856 SM00897 FIST N domain SJPD1_1856 SM01204 SJPD1_1856 SJPD1_1857 SM00448 cheY-homologous receiver domain SJPD1_1857 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1859 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1859 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1865 SM01018 B12 binding domain SJPD1_1868 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1871 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1871 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1874 SM00938 Nitrogen regulatory protein P-II SJPD1_1876 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_1877 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_1881 SM00947 Carbonic anhydrase SJPD1_1883 SM00052 Putative diguanylate phosphodiesterase SJPD1_1883 SM00091 PAS domain SJPD1_1883 SM00267 diguanylate cyclase SJPD1_1883 SM01079 SJPD1_1883 SJPD1_1891 SM01329 SJPD1_1891 SJPD1_1893 SM00382 ATPases associated with a variety of cellular activities SJPD1_1896 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SJPD1_1900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_1900 SM00091 PAS domain SJPD1_1901 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1909 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_1910 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_1913 SM00267 diguanylate cyclase SJPD1_1916 SM00341 Helicase and RNase D C-terminal SJPD1_1916 SM00487 DEAD-like helicases superfamily SJPD1_1916 SM00490 helicase superfamily c-terminal domain SJPD1_1916 SM00956 SJPD1_1916 SJPD1_1919 SM00487 DEAD-like helicases superfamily SJPD1_1919 SM00490 helicase superfamily c-terminal domain SJPD1_1922 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_1922 SM00387 Histidine kinase-like ATPases SJPD1_1922 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1923 SM00448 cheY-homologous receiver domain SJPD1_1923 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1946 SM00382 ATPases associated with a variety of cellular activities SJPD1_1953 SM00448 cheY-homologous receiver domain SJPD1_1953 SM00862 Transcriptional regulatory protein, C terminal SJPD1_1954 SM00387 Histidine kinase-like ATPases SJPD1_1954 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_1958 SM00899 SJPD1_1958 SJPD1_1967 SM00965 Secretin and TonB N terminus short domain SJPD1_1970 SM00382 ATPases associated with a variety of cellular activities SJPD1_1982 SM00487 DEAD-like helicases superfamily SJPD1_1982 SM00490 helicase superfamily c-terminal domain SJPD1_1987 SM00487 DEAD-like helicases superfamily SJPD1_1987 SM00490 helicase superfamily c-terminal domain SJPD1_1991 SM00479 SJPD1_1991 SJPD1_1997 SM00478 endonuclease III SJPD1_1999 SM00487 DEAD-like helicases superfamily SJPD1_1999 SM00490 helicase superfamily c-terminal domain SJPD1_1999 SM00982 SJPD1_1999 SJPD1_1999 SM01058 CarD-like/TRCF domain SJPD1_2003 SM00267 diguanylate cyclase SJPD1_2008 SM01323 SJPD1_2008 SJPD1_2013 SM00382 ATPases associated with a variety of cellular activities SJPD1_2013 SM01086 C-terminal, D2-small domain, of ClpB protein SJPD1_2030 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_2030 SM00871 Bacterial transcription activator, effector binding domain SJPD1_2038 SM00382 ATPases associated with a variety of cellular activities SJPD1_2038 SM00962 SRP54-type protein, GTPase domain SJPD1_2038 SM00963 SRP54-type protein, helical bundle domain SJPD1_2045 SM01001 AIR carboxylase SJPD1_2049 SM01230 SJPD1_2049 SJPD1_2052 SM00382 ATPases associated with a variety of cellular activities SJPD1_2056 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SJPD1_2094 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_2105 SM00829 Enoylreductase SJPD1_2112 SM00563 Phosphate acyltransferases SJPD1_2113 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SJPD1_2122 SM00764 Citrate lyase ligase C-terminal domain SJPD1_2132 SM00267 diguanylate cyclase SJPD1_2142 SM00382 ATPases associated with a variety of cellular activities SJPD1_2154 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SJPD1_2158 SM00267 diguanylate cyclase SJPD1_2163 SM00448 cheY-homologous receiver domain SJPD1_2166 SM00867 YceI-like domain SJPD1_2171 SM00382 ATPases associated with a variety of cellular activities SJPD1_2179 SM00382 ATPases associated with a variety of cellular activities SJPD1_2184 SM00052 Putative diguanylate phosphodiesterase SJPD1_2184 SM00267 diguanylate cyclase SJPD1_2184 SM00897 FIST N domain SJPD1_2184 SM01204 SJPD1_2184 SJPD1_2188 SM00671 Sel1-like repeats. SJPD1_2189 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_2203 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SJPD1_2214 SM00028 Tetratricopeptide repeats SJPD1_2215 SM00917 LeuA allosteric (dimerisation) domain SJPD1_2218 SM00382 ATPases associated with a variety of cellular activities SJPD1_2220 SM00448 cheY-homologous receiver domain SJPD1_2255 SM00028 Tetratricopeptide repeats SJPD1_2259 SM00052 Putative diguanylate phosphodiesterase SJPD1_2259 SM00267 diguanylate cyclase SJPD1_2261 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SJPD1_2262 SM00267 diguanylate cyclase SJPD1_2267 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2267 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2268 SM00797 Allophanate hydrolase subunit 2 SJPD1_2269 SM00796 Allophanate hydrolase subunit 1 SJPD1_2271 SM01228 SJPD1_2271 SJPD1_2278 SM00825 Beta-ketoacyl synthase SJPD1_2279 SM00823 Phosphopantetheine attachment site SJPD1_2280 SM00822 SJPD1_2280 SJPD1_2295 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_2298 SM00387 Histidine kinase-like ATPases SJPD1_2299 SM00448 cheY-homologous receiver domain SJPD1_2299 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2303 SM00052 Putative diguanylate phosphodiesterase SJPD1_2303 SM00267 diguanylate cyclase SJPD1_2308 SM00878 Biotin carboxylase C-terminal domain SJPD1_2311 SM00487 DEAD-like helicases superfamily SJPD1_2311 SM00490 helicase superfamily c-terminal domain SJPD1_2315 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_2321 SM00382 ATPases associated with a variety of cellular activities SJPD1_2322 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2324 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2325 SM00563 Phosphate acyltransferases SJPD1_2327 SM00448 cheY-homologous receiver domain SJPD1_2327 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2328 SM00387 Histidine kinase-like ATPases SJPD1_2328 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2338 SM00387 Histidine kinase-like ATPases SJPD1_2349 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_2353 SM00450 Rhodanese Homology Domain SJPD1_2361 SM00890 Domain of unknown function SJPD1_2369 SM00342 helix_turn_helix, arabinose operon control protein SJPD1_2392 SM00448 cheY-homologous receiver domain SJPD1_2392 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2393 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_2393 SM00091 PAS domain SJPD1_2393 SM00387 Histidine kinase-like ATPases SJPD1_2395 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SJPD1_2399 SM00788 Adenylosuccinate synthetase SJPD1_2402 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2402 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2403 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2403 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2405 SM00861 Transketolase, pyrimidine binding domain SJPD1_2407 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SJPD1_2414 SM00662 RNA polymerases D SJPD1_2415 SM00363 S4 RNA-binding domain SJPD1_2415 SM01390 SJPD1_2415 SJPD1_2427 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SJPD1_2428 SM01374 SJPD1_2428 SJPD1_2432 SM00322 K homology RNA-binding domain SJPD1_2435 SM01382 SJPD1_2435 SJPD1_2435 SM01383 SJPD1_2435 SJPD1_2439 SM01403 SJPD1_2439 SJPD1_2441 SM00331 Sigma factor PP2C-like phosphatases SJPD1_2443 SM00899 SJPD1_2443 SJPD1_2446 SM00358 Double-stranded RNA binding motif SJPD1_2446 SM00535 Ribonuclease III family SJPD1_2449 SM00400 zinc finger SJPD1_2449 SM00493 SJPD1_2449 SJPD1_2451 SM00448 cheY-homologous receiver domain SJPD1_2453 SM00267 diguanylate cyclase SJPD1_2454 SM00448 cheY-homologous receiver domain SJPD1_2455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_2455 SM00091 PAS domain SJPD1_2455 SM00387 Histidine kinase-like ATPases SJPD1_2455 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2456 SM00448 cheY-homologous receiver domain SJPD1_2458 SM00387 Histidine kinase-like ATPases SJPD1_2459 SM00138 Methyltransferase, chemotaxis proteins SJPD1_2460 SM00073 Histidine Phosphotransfer domain SJPD1_2460 SM00260 Two component signalling adaptor domain SJPD1_2460 SM00387 Histidine kinase-like ATPases SJPD1_2460 SM01231 SJPD1_2460 SJPD1_2462 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2463 SM00260 Two component signalling adaptor domain SJPD1_2464 SM00448 cheY-homologous receiver domain SJPD1_2465 SM00271 DnaJ molecular chaperone homology domain SJPD1_2477 SM00382 ATPases associated with a variety of cellular activities SJPD1_2482 SM00267 diguanylate cyclase SJPD1_2484 SM00448 cheY-homologous receiver domain SJPD1_2484 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2485 SM00387 Histidine kinase-like ATPases SJPD1_2485 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2487 SM00986 Uracil DNA glycosylase superfamily SJPD1_2487 SM00987 UreE urease accessory protein, C-terminal domain SJPD1_2488 SM00052 Putative diguanylate phosphodiesterase SJPD1_2490 SM00054 EF-hand, calcium binding motif SJPD1_2492 SM00903 Flavin reductase like domain SJPD1_2501 SM00870 SJPD1_2501 SJPD1_2502 SM00387 Histidine kinase-like ATPases SJPD1_2503 SM00448 cheY-homologous receiver domain SJPD1_2503 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2506 SM00988 UreE urease accessory protein, N-terminal domain SJPD1_2510 SM00382 ATPases associated with a variety of cellular activities SJPD1_2515 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_2515 SM00091 PAS domain SJPD1_2515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2515 SM00387 Histidine kinase-like ATPases SJPD1_2515 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2515 SM00448 cheY-homologous receiver domain SJPD1_2516 SM00387 Histidine kinase-like ATPases SJPD1_2516 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2516 SM00448 cheY-homologous receiver domain SJPD1_2517 SM00448 cheY-homologous receiver domain SJPD1_2517 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2522 SM00327 von Willebrand factor (vWF) type A domain SJPD1_2523 SM00327 von Willebrand factor (vWF) type A domain SJPD1_2524 SM00028 Tetratricopeptide repeats SJPD1_2527 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_2527 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SJPD1_2535 SM00831 Cation transporter/ATPase, N-terminus SJPD1_2546 SM00062 Bacterial periplasmic substrate-binding proteins SJPD1_2547 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SJPD1_2547 SM00091 PAS domain SJPD1_2547 SM00267 diguanylate cyclase SJPD1_2548 SM00347 helix_turn_helix multiple antibiotic resistance protein SJPD1_2551 SM00382 ATPases associated with a variety of cellular activities SJPD1_2562 SM00382 ATPases associated with a variety of cellular activities SJPD1_2576 SM00382 ATPases associated with a variety of cellular activities SJPD1_2590 SM00387 Histidine kinase-like ATPases SJPD1_2591 SM00448 cheY-homologous receiver domain SJPD1_2595 SM00347 helix_turn_helix multiple antibiotic resistance protein SJPD1_2596 SM00867 YceI-like domain SJPD1_2598 SM00704 CDGSH-type zinc finger. Function unknown. SJPD1_2603 SM00091 PAS domain SJPD1_2604 SM00448 cheY-homologous receiver domain SJPD1_2604 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2605 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2619 SM00825 Beta-ketoacyl synthase SJPD1_2621 SM00487 DEAD-like helicases superfamily SJPD1_2621 SM00490 helicase superfamily c-terminal domain SJPD1_2627 SM00460 Transglutaminase/protease-like homologues SJPD1_2630 SM00448 cheY-homologous receiver domain SJPD1_2634 SM00796 Allophanate hydrolase subunit 1 SJPD1_2634 SM00797 Allophanate hydrolase subunit 2 SJPD1_2634 SM00878 Biotin carboxylase C-terminal domain SJPD1_2637 SM00382 ATPases associated with a variety of cellular activities SJPD1_2640 SM00387 Histidine kinase-like ATPases SJPD1_2641 SM00448 cheY-homologous receiver domain SJPD1_2641 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2642 SM00054 EF-hand, calcium binding motif SJPD1_2643 SM00448 cheY-homologous receiver domain SJPD1_2643 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2644 SM00387 Histidine kinase-like ATPases SJPD1_2644 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2649 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2649 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2649 SM01049 SJPD1_2649 SJPD1_2654 SM00925 MltA specific insert domain SJPD1_2662 SM00852 Probable molybdopterin binding domain SJPD1_2667 SM00382 ATPases associated with a variety of cellular activities SJPD1_2671 SM00267 diguanylate cyclase SJPD1_2693 SM00487 DEAD-like helicases superfamily SJPD1_2698 SM00382 ATPases associated with a variety of cellular activities SJPD1_2708 SM00014 Acid phosphatase homologues SJPD1_2718 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2719 SM00316 Ribosomal protein S1-like RNA-binding domain SJPD1_2719 SM00732 Likely ribonuclease with RNase H fold. SJPD1_2722 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SJPD1_2722 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SJPD1_2725 SM00382 ATPases associated with a variety of cellular activities SJPD1_2736 SM00382 ATPases associated with a variety of cellular activities SJPD1_2737 SM01144 SJPD1_2737 SJPD1_2745 SM00347 helix_turn_helix multiple antibiotic resistance protein SJPD1_2746 SM00822 SJPD1_2746 SJPD1_2753 SM00052 Putative diguanylate phosphodiesterase SJPD1_2753 SM00267 diguanylate cyclase SJPD1_2754 SM00448 cheY-homologous receiver domain SJPD1_2754 SM00862 Transcriptional regulatory protein, C terminal SJPD1_2755 SM00387 Histidine kinase-like ATPases SJPD1_2755 SM00388 His Kinase A (phosphoacceptor) domain SJPD1_2762 SM00232 JAB/MPN domain SJPD1_2770 SM00450 Rhodanese Homology Domain SJPD1_2771 SM00267 diguanylate cyclase SJPD1_2773 SM00226 Low molecular weight phosphatase family SJPD1_2777 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SJPD1_2779 SM00919 Malic enzyme, NAD binding domain SJPD1_2779 SM01274 SJPD1_2779 SJPD1_2782 SM00878 Biotin carboxylase C-terminal domain SJPD1_2788 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SJPD1_2797 SM00858 SJPD1_2797 SJPD1_2804 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SJPD1_2804 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SJPD1_2804 SM00493 SJPD1_2804 SJPD1_2805 SM00729 Elongator protein 3, MiaB family, Radical SAM SJPD1_2805 SM00876 Biotin and Thiamin Synthesis associated domain SJPD1_2809 SM01192 SJPD1_2809 SJPD1_2809 SM01193 SJPD1_2809 SJPD1_2810 SM00382 ATPases associated with a variety of cellular activities SJPD1_2817 SM00052 Putative diguanylate phosphodiesterase SJPD1_2817 SM00267 diguanylate cyclase SJPD1_2817 SM01049 SJPD1_2817 SJPD1_2832 SM00419 helix_turn_helix, cAMP Regulatory protein SJPD1_2836 SM00052 Putative diguanylate phosphodiesterase SJPD1_2836 SM00267 diguanylate cyclase SJPD1_2838 SM00886 Stress responsive A/B Barrel Domain SJPD1_2841 SM00360 RNA recognition motif SJPD1_2861 SM00450 Rhodanese Homology Domain SJPD1_2864 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_2868 SM00450 Rhodanese Homology Domain SJPD1_2871 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SJPD1_2877 SM00382 ATPases associated with a variety of cellular activities SJPD1_2878 SM01321 SJPD1_2878 SJPD1_2881 SM00237 Domains in Na-Ca exchangers and integrin-beta4 SJPD1_2882 SM01321 SJPD1_2882 SJPD1_2893 SM00838 Elongation factor G C-terminus