SJPD1_2523 96315fe22639abb4cf731034a4ca4e12 322 SMART SM00327 84 252 2.1E-15 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_2523 96315fe22639abb4cf731034a4ca4e12 322 Pfam PF13519 von Willebrand factor type A domain 91 192 3.2E-13 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_2523 96315fe22639abb4cf731034a4ca4e12 322 SUPERFAMILY SSF53300 85 218 2.08E-21 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_2523 96315fe22639abb4cf731034a4ca4e12 322 Gene3D G3DSA:3.40.50.410 78 283 1.4E-36 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_2523 96315fe22639abb4cf731034a4ca4e12 322 TIGRFAM TIGR02226 two_anch: N-terminal double-transmembrane domain 2 75 5.9E-7 T 13-10-2018 IPR011933 Double transmembrane domain SJPD1_2134 6bd7da7b4a69d285fcec254c10374ad0 123 Pfam PF01230 HIT domain 3 86 6.2E-6 T 13-10-2018 IPR001310 Histidine triad (HIT) protein SJPD1_2134 6bd7da7b4a69d285fcec254c10374ad0 123 PIRSF PIRSF000714 2 119 2.6E-34 T 13-10-2018 IPR026026 Histidine triad hydrolase, Hint-type SJPD1_2134 6bd7da7b4a69d285fcec254c10374ad0 123 Gene3D G3DSA:3.30.428.10 4 123 5.9E-22 T 13-10-2018 IPR036265 HIT-like superfamily SJPD1_2134 6bd7da7b4a69d285fcec254c10374ad0 123 SUPERFAMILY SSF54197 3 119 2.78E-23 T 13-10-2018 IPR036265 HIT-like superfamily SJPD1_0741 fac967edb57a0ed7c91ae2b5cd31108b 182 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 4 177 3.2E-58 T 13-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 SJPD1_0741 fac967edb57a0ed7c91ae2b5cd31108b 182 Gene3D G3DSA:3.40.50.880 1 182 2.0E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0741 fac967edb57a0ed7c91ae2b5cd31108b 182 Pfam PF01965 DJ-1/PfpI family 3 165 7.6E-40 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 SJPD1_0741 fac967edb57a0ed7c91ae2b5cd31108b 182 SUPERFAMILY SSF52317 3 180 4.08E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 PIRSF PIRSF036687 1 852 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 4 849 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 ProSitePatterns PS01244 Aconitase family signature 2. 756 769 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Gene3D G3DSA:3.20.19.10 164 351 3.3E-64 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Gene3D G3DSA:3.40.1060.10 376 672 1.4E-143 T 13-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Pfam PF11791 Aconitate B N-terminal domain 6 158 2.1E-62 T 13-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Gene3D G3DSA:1.25.40.310 3 163 2.0E-59 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 SUPERFAMILY SSF74778 3 162 4.18E-59 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 SUPERFAMILY SSF52016 165 362 1.94E-57 T 13-10-2018 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Gene3D G3DSA:3.30.499.10 393 520 1.4E-143 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Gene3D G3DSA:3.30.499.10 674 852 5.9E-58 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 SUPERFAMILY SSF53732 369 848 5.89E-140 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Pfam PF00330 Aconitase family (aconitate hydratase) 463 813 5.0E-43 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_1571 672cd783fee3982ee4fb6e25fa815ae1 852 Pfam PF06434 Aconitate hydratase 2 N-terminus 170 372 4.4E-92 T 13-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 SJPD1_1913 07f64ec00322002812c4beb363e3eeba 490 SUPERFAMILY SSF103190 50 174 2.35E-6 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_1913 07f64ec00322002812c4beb363e3eeba 490 SMART SM00267 321 489 1.2E-57 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1913 07f64ec00322002812c4beb363e3eeba 490 Pfam PF00990 Diguanylate cyclase, GGDEF domain 333 485 8.9E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1913 07f64ec00322002812c4beb363e3eeba 490 SUPERFAMILY SSF55073 337 488 2.59E-46 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1913 07f64ec00322002812c4beb363e3eeba 490 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 328 489 6.4E-51 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1913 07f64ec00322002812c4beb363e3eeba 490 Gene3D G3DSA:3.30.70.270 318 489 1.3E-54 T 13-10-2018 SJPD1_1293 422cff705604545c289e6f2bd0361abf 157 Gene3D G3DSA:3.30.420.10 1 156 4.2E-17 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_1293 422cff705604545c289e6f2bd0361abf 157 Pfam PF00075 RNase H 3 134 1.5E-13 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 SJPD1_1293 422cff705604545c289e6f2bd0361abf 157 SUPERFAMILY SSF53098 2 153 3.04E-16 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_1281 07ecea4219bdf0741994ab71e02e48e7 97 SUPERFAMILY SSF54909 4 82 1.61E-13 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel SJPD1_1281 07ecea4219bdf0741994ab71e02e48e7 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 26 70 3.5E-6 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain SJPD1_1281 07ecea4219bdf0741994ab71e02e48e7 97 Gene3D G3DSA:3.30.70.100 2 92 1.3E-10 T 13-10-2018 SJPD1_0085 726f6999be8dea0f456bcb8083b23669 701 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 122 696 1.6E-167 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 SJPD1_0085 726f6999be8dea0f456bcb8083b23669 701 SUPERFAMILY SSF51998 123 697 1.46E-142 T 13-10-2018 SJPD1_0085 726f6999be8dea0f456bcb8083b23669 701 Pfam PF03477 ATP cone domain 4 86 3.1E-17 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 SJPD1_0085 726f6999be8dea0f456bcb8083b23669 701 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 121 696 5.0E-130 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SUPERFAMILY SSF55874 303 473 3.14E-40 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 314 9.6E-18 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SMART SM00388 249 314 1.4E-22 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Gene3D G3DSA:3.40.50.2300 492 620 1.6E-13 T 13-10-2018 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Gene3D G3DSA:1.20.120.160 773 883 3.3E-13 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Gene3D G3DSA:3.30.565.10 315 478 1.8E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Gene3D G3DSA:3.40.50.2300 621 752 2.3E-38 T 13-10-2018 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Pfam PF00072 Response regulator receiver domain 637 745 2.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Pfam PF00072 Response regulator receiver domain 498 610 4.2E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SUPERFAMILY SSF47384 235 316 1.41E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SUPERFAMILY SSF158472 172 222 3.4E-5 T 13-10-2018 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SUPERFAMILY SSF52172 492 614 1.57E-13 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Gene3D G3DSA:1.10.287.130 235 314 4.1E-25 T 13-10-2018 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SMART SM00448 495 612 1.1E-6 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SMART SM00448 635 749 1.8E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Gene3D G3DSA:1.20.1480.50 137 229 8.6E-7 T 13-10-2018 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SUPERFAMILY SSF47226 732 856 1.07E-11 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 454 7.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 7.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 473 7.8E-10 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SUPERFAMILY SSF52172 633 765 5.27E-36 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 361 474 1.0E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1837 a3378bbfd60d2175c10bfeea382ea10a 967 SMART SM00387 360 476 1.6E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1741 16ab4b7f6ebe251e3524a7baa3657d9e 351 Gene3D G3DSA:3.80.30.20 1 286 6.1E-81 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_1741 16ab4b7f6ebe251e3524a7baa3657d9e 351 SMART SM00729 1 216 1.1E-35 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_1741 16ab4b7f6ebe251e3524a7baa3657d9e 351 Pfam PF04055 Radical SAM superfamily 6 158 2.1E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1741 16ab4b7f6ebe251e3524a7baa3657d9e 351 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 3 347 2.1E-99 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 SJPD1_1741 16ab4b7f6ebe251e3524a7baa3657d9e 351 SUPERFAMILY SSF102114 3 335 1.09E-79 T 13-10-2018 SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 Pfam PF02769 AIR synthase related protein, C-terminal domain 173 329 4.0E-27 T 13-10-2018 IPR010918 PurM-like, C-terminal domain SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 4 314 5.4E-121 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 SUPERFAMILY SSF56042 171 326 1.05E-46 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 Gene3D G3DSA:3.90.650.10 170 330 7.0E-53 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 SUPERFAMILY SSF55326 4 165 4.71E-46 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 4 331 40.582 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 Gene3D G3DSA:3.30.1330.10 3 166 9.2E-62 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_0104 d1141692b44e814fca308de30d0520d7 331 Pfam PF00586 AIR synthase related protein, N-terminal domain 75 160 6.6E-11 T 13-10-2018 IPR016188 PurM-like, N-terminal domain SJPD1_2639 ead951e8bc8ee0f7e671bd91ae125f07 355 TIGRFAM TIGR03427 ABC_peri_uca: ABC transporter periplasmic binding protein, urea carboxylase region 31 355 6.5E-170 T 13-10-2018 IPR017793 ABC transporter, urea utilisation-associated, substrate-binding protein SJPD1_2639 ead951e8bc8ee0f7e671bd91ae125f07 355 Gene3D G3DSA:3.40.190.10 117 213 2.6E-28 T 13-10-2018 SJPD1_2639 ead951e8bc8ee0f7e671bd91ae125f07 355 Gene3D G3DSA:3.40.190.10 50 312 2.6E-28 T 13-10-2018 SJPD1_2639 ead951e8bc8ee0f7e671bd91ae125f07 355 Pfam PF09084 NMT1/THI5 like 61 241 1.9E-11 T 13-10-2018 IPR015168 SsuA/THI5-like SJPD1_2639 ead951e8bc8ee0f7e671bd91ae125f07 355 SUPERFAMILY SSF53850 38 252 2.17E-36 T 13-10-2018 SJPD1_1794 d9770a27e94af4459453809533690720 434 PIRSF PIRSF000521 17 431 6.7E-31 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1794 d9770a27e94af4459453809533690720 434 Gene3D G3DSA:3.90.1150.10 12 422 2.1E-162 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1794 d9770a27e94af4459453809533690720 434 Gene3D G3DSA:3.40.640.10 64 333 2.1E-162 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1794 d9770a27e94af4459453809533690720 434 Pfam PF00202 Aminotransferase class-III 25 426 2.3E-123 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1794 d9770a27e94af4459453809533690720 434 SUPERFAMILY SSF53383 10 428 3.68E-123 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1794 d9770a27e94af4459453809533690720 434 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 2 431 49.049 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 SJPD1_1794 d9770a27e94af4459453809533690720 434 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 243 280 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1794 d9770a27e94af4459453809533690720 434 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 428 3.7E-173 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 SUPERFAMILY SSF48498 89 184 3.39E-15 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 54 3.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 4.6E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 4.6E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 50 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 Gene3D G3DSA:1.10.357.10 1 188 3.8E-37 T 13-10-2018 SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 Pfam PF16925 Bacterial transcriptional repressor C-terminal 81 182 4.0E-12 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal SJPD1_0024 4d3987a66b4ab3b288ee3682e5c4bf45 188 SUPERFAMILY SSF46689 2 59 5.64E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 422 9.8E-171 T 13-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 SUPERFAMILY SSF48256 8 422 4.19E-151 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 Pfam PF00285 Citrate synthase, C-terminal domain 48 413 3.0E-125 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 Gene3D G3DSA:2.20.28.60 4 52 4.8E-17 T 13-10-2018 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PRINTS PR00143 Citrate synthase signature 167 180 1.7E-49 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PRINTS PR00143 Citrate synthase signature 221 236 1.7E-49 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PRINTS PR00143 Citrate synthase signature 298 318 1.7E-49 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PRINTS PR00143 Citrate synthase signature 243 271 1.7E-49 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PRINTS PR00143 Citrate synthase signature 361 377 1.7E-49 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PRINTS PR00143 Citrate synthase signature 381 395 1.7E-49 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 Gene3D G3DSA:1.10.230.10 270 378 3.0E-135 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 Gene3D G3DSA:1.10.580.10 59 413 3.0E-135 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 PIRSF PIRSF001369 39 426 4.1E-147 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type SJPD1_2806 6fb558385c4173e759ab2b96ff2b8785 428 ProSitePatterns PS00480 Citrate synthase signature. 305 317 - T 13-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 SJPD1_0994 77871a523f28161a45fee48c087db570 302 SUPERFAMILY SSF54862 98 295 1.32E-16 T 13-10-2018 SJPD1_0994 77871a523f28161a45fee48c087db570 302 Pfam PF12801 4Fe-4S binding domain 188 222 2.0E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0994 77871a523f28161a45fee48c087db570 302 Pfam PF12801 4Fe-4S binding domain 90 134 1.8E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0994 77871a523f28161a45fee48c087db570 302 Gene3D G3DSA:3.30.70.20 226 300 9.2E-8 T 13-10-2018 SJPD1_0994 77871a523f28161a45fee48c087db570 302 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 34 295 1.7E-84 T 13-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 Gene3D G3DSA:2.40.30.10 166 308 1.8E-98 T 13-10-2018 SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 1 356 6.3E-96 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 Gene3D G3DSA:1.10.8.260 237 291 1.8E-98 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 Pfam PF03486 HI0933-like protein 1 357 2.3E-96 T 13-10-2018 SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 SUPERFAMILY SSF160996 167 309 4.32E-29 T 13-10-2018 SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 SUPERFAMILY SSF51905 7 363 3.75E-29 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1884 0e864bd6b1ec7b4891fe51ef16d6e4a2 364 Gene3D G3DSA:3.50.50.60 2 356 1.8E-98 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1866 694823c3478d4a29429b983bbb671422 372 Pfam PF13458 Periplasmic binding protein 22 362 1.6E-53 T 13-10-2018 IPR028081 Leucine-binding protein domain SJPD1_1866 694823c3478d4a29429b983bbb671422 372 Gene3D G3DSA:3.40.50.2300 45 351 1.0E-86 T 13-10-2018 SJPD1_1866 694823c3478d4a29429b983bbb671422 372 SUPERFAMILY SSF53822 21 366 1.63E-76 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_1866 694823c3478d4a29429b983bbb671422 372 Gene3D G3DSA:3.40.50.2300 139 268 1.0E-86 T 13-10-2018 SJPD1_1866 694823c3478d4a29429b983bbb671422 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 250 268 2.4E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_1866 694823c3478d4a29429b983bbb671422 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 23 39 2.4E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_1866 694823c3478d4a29429b983bbb671422 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 84 94 2.4E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_1170 96e7e7ec8daab9d4b7f8437f93870760 335 Gene3D G3DSA:3.40.50.12710 1 335 1.5E-46 T 13-10-2018 IPR038375 Protein arginine methyltransferase NDUFAF7 superfamily Reactome: R-HSA-6799198 SJPD1_1170 96e7e7ec8daab9d4b7f8437f93870760 335 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 53 276 5.6E-14 T 13-10-2018 IPR003788 Protein arginine methyltransferase NDUFAF7 Reactome: R-HSA-6799198 SJPD1_1170 96e7e7ec8daab9d4b7f8437f93870760 335 SUPERFAMILY SSF53335 1 333 5.15E-60 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SUPERFAMILY SSF50249 124 196 1.17E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 343 361 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 225 246 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 168 188 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 54 68 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 36 54 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 303 322 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 PRINTS PR00681 Ribosomal protein S1 signature 123 139 5.1E-36 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Pfam PF00575 S1 RNA binding domain 373 445 2.3E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Pfam PF00575 S1 RNA binding domain 287 360 1.3E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Pfam PF00575 S1 RNA binding domain 459 527 3.9E-12 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Pfam PF00575 S1 RNA binding domain 205 273 9.3E-17 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Pfam PF00575 S1 RNA binding domain 123 184 1.5E-5 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Pfam PF00575 S1 RNA binding domain 36 98 2.2E-6 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SUPERFAMILY SSF50249 273 365 3.51E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SUPERFAMILY SSF50249 29 117 1.36E-10 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SMART SM00316 203 273 9.4E-19 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SMART SM00316 34 100 2.8E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SMART SM00316 375 445 2.0E-23 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SMART SM00316 460 527 7.2E-18 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SMART SM00316 118 184 0.018 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SMART SM00316 288 360 1.6E-24 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Gene3D G3DSA:2.40.50.140 283 371 2.5E-27 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Gene3D G3DSA:2.40.50.140 195 282 4.1E-21 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SUPERFAMILY SSF50249 374 457 1.27E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Gene3D G3DSA:2.40.50.140 459 535 6.5E-17 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Gene3D G3DSA:2.40.50.140 372 455 2.0E-25 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 Gene3D G3DSA:2.40.50.140 20 111 3.8E-11 T 13-10-2018 SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SUPERFAMILY SSF50249 445 551 5.65E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0730 bf0971f1e88e4711b1eec75c383e7999 558 SUPERFAMILY SSF50249 204 290 9.61E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1039 65e5dd038d9b6bdd34f11ddc338ff415 178 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1039 65e5dd038d9b6bdd34f11ddc338ff415 178 SUPERFAMILY SSF54862 17 108 2.01E-22 T 13-10-2018 SJPD1_1039 65e5dd038d9b6bdd34f11ddc338ff415 178 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 74 85 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1039 65e5dd038d9b6bdd34f11ddc338ff415 178 Gene3D G3DSA:3.30.70.3270 17 150 2.0E-23 T 13-10-2018 SJPD1_1039 65e5dd038d9b6bdd34f11ddc338ff415 178 Pfam PF12838 4Fe-4S dicluster domain 38 88 2.3E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2877 47c904f746060b5a90b203382385cd93 594 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 20 561 1.5E-231 T 13-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 SJPD1_2877 47c904f746060b5a90b203382385cd93 594 Gene3D G3DSA:1.20.1560.10 12 319 5.6E-41 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_2877 47c904f746060b5a90b203382385cd93 594 SUPERFAMILY SSF52540 324 560 3.86E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2877 47c904f746060b5a90b203382385cd93 594 SUPERFAMILY SSF90123 18 316 4.71E-49 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_2877 47c904f746060b5a90b203382385cd93 594 Pfam PF00664 ABC transporter transmembrane region 27 282 2.3E-17 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 SJPD1_2877 47c904f746060b5a90b203382385cd93 594 SMART SM00382 361 546 9.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2877 47c904f746060b5a90b203382385cd93 594 Gene3D G3DSA:3.40.50.300 320 570 5.5E-67 T 13-10-2018 SJPD1_2877 47c904f746060b5a90b203382385cd93 594 Pfam PF00005 ABC transporter 352 499 9.3E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2877 47c904f746060b5a90b203382385cd93 594 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2409 1e430f191813773df3724df433218d5f 121 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 91 4.0E-35 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 SJPD1_2409 1e430f191813773df3724df433218d5f 121 PIRSF PIRSF006246 1 120 1.5E-49 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 SJPD1_2409 1e430f191813773df3724df433218d5f 121 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 121 64.211 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 SJPD1_2409 1e430f191813773df3724df433218d5f 121 Pfam PF02261 Aspartate decarboxylase 1 113 1.0E-49 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 SJPD1_2409 1e430f191813773df3724df433218d5f 121 Gene3D G3DSA:2.40.40.20 1 121 1.2E-49 T 13-10-2018 SJPD1_2409 1e430f191813773df3724df433218d5f 121 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 116 2.0E-48 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 SJPD1_2409 1e430f191813773df3724df433218d5f 121 SUPERFAMILY SSF50692 1 120 1.08E-45 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 SUPERFAMILY SSF46689 239 289 2.78E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 SUPERFAMILY SSF46689 188 237 3.11E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 Pfam PF06719 AraC-type transcriptional regulator N-terminus 23 172 4.2E-30 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 6.2E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 6.2E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 Pfam PF12833 Helix-turn-helix domain 209 286 2.0E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 Gene3D G3DSA:1.10.10.60 182 291 1.8E-27 T 13-10-2018 SJPD1_0863 a279813781a0f64e2cffb75481ecd247 295 SMART SM00342 203 286 9.9E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 SUPERFAMILY SSF50447 559 641 4.32E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 ProSitePatterns PS01176 Initiation factor 2 signature. 838 860 - T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 302 884 5.5E-252 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 SUPERFAMILY SSF52156 663 794 1.01E-33 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Gene3D G3DSA:2.40.30.10 789 885 1.8E-32 T 13-10-2018 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 885 16.604 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Pfam PF11987 Translation-initiation factor 2 673 776 3.8E-35 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 389 545 1.3E-35 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Gene3D G3DSA:3.40.50.10050 680 788 1.3E-35 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Gene3D G3DSA:3.40.50.300 383 557 1.8E-70 T 13-10-2018 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Gene3D G3DSA:2.40.30.10 558 676 8.8E-36 T 13-10-2018 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Gene3D G3DSA:1.10.10.2480 1 67 1.2E-14 T 13-10-2018 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 SUPERFAMILY SSF50447 789 884 2.55E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 SUPERFAMILY SSF52540 381 558 1.08E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Pfam PF00009 Elongation factor Tu GTP binding domain 390 546 3.4E-35 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 50 4.1E-14 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal SJPD1_0291 8085d446b455b86f2ebd452030c8b141 887 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 307 356 4.1E-14 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 PIRSF PIRSF000106 21 424 2.7E-72 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 SUPERFAMILY SSF51735 163 421 1.36E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 SUPERFAMILY SSF53223 13 161 3.6E-53 T 13-10-2018 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 Gene3D G3DSA:3.40.50.720 161 425 2.4E-84 T 13-10-2018 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 SMART SM00919 163 397 5.0E-140 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 SMART SM01274 18 151 1.3E-80 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 Pfam PF03949 Malic enzyme, NAD binding domain 165 355 1.0E-22 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 Pfam PF00390 Malic enzyme, N-terminal domain 20 151 5.0E-29 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 SJPD1_2779 2e878e66b6cf3f6a260f9d5ee06a4df3 425 Gene3D G3DSA:3.40.50.10380 2 160 5.5E-70 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 SJPD1_1242 a0a789d04459d9df771b665cca19b8b4 252 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 216 2.3E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1242 a0a789d04459d9df771b665cca19b8b4 252 SUPERFAMILY SSF46894 123 217 1.16E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1242 a0a789d04459d9df771b665cca19b8b4 252 Gene3D G3DSA:3.40.50.2300 1 125 2.9E-5 T 13-10-2018 SJPD1_1242 a0a789d04459d9df771b665cca19b8b4 252 SMART SM00862 145 216 4.4E-8 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1242 a0a789d04459d9df771b665cca19b8b4 252 Gene3D G3DSA:1.10.10.10 127 233 1.4E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 399 2.2E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 2.2E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 13 2.2E-21 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 176 3.2E-18 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 Gene3D G3DSA:1.10.287.950 207 536 1.3E-58 T 13-10-2018 SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 449 2.2E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 SMART SM00283 274 535 4.3E-44 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1909 26335cb3276ae5eb0c25a69f12c1679e 536 SUPERFAMILY SSF58104 228 535 1.96E-58 T 13-10-2018 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 SUPERFAMILY SSF53067 97 307 1.11E-27 T 13-10-2018 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 Gene3D G3DSA:3.30.420.40 124 291 9.0E-101 T 13-10-2018 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 ProSitePatterns PS01016 Glycoprotease family signature. 92 112 - T 13-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 3 304 3.0E-100 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 328 54.811 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 Gene3D G3DSA:3.30.420.40 2 313 9.0E-101 T 13-10-2018 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 2 311 7.0E-108 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 Pfam PF00814 Glycoprotease family 24 304 4.9E-76 T 13-10-2018 IPR000905 Gcp-like domain SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 SUPERFAMILY SSF53067 1 118 1.23E-19 T 13-10-2018 SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 72 92 1.3E-37 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 93 112 1.3E-37 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 149 170 1.3E-37 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 3 16 1.3E-37 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 126 138 1.3E-37 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2815 1901e63f67b13719d11c6804c2750ef1 333 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 261 270 1.3E-37 T 13-10-2018 IPR017861 Kae1/TsaD family SJPD1_2665 98c69443040ccc3da181ced70444495b 329 SUPERFAMILY SSF117916 246 328 1.5E-18 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_2665 98c69443040ccc3da181ced70444495b 329 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 262 329 2.0E-12 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 SJPD1_2665 98c69443040ccc3da181ced70444495b 329 Pfam PF01106 NifU-like domain 256 326 8.4E-20 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 SJPD1_2665 98c69443040ccc3da181ced70444495b 329 Gene3D G3DSA:3.30.300.130 252 326 3.4E-17 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_2665 98c69443040ccc3da181ced70444495b 329 SUPERFAMILY SSF82649 14 156 1.91E-35 T 13-10-2018 SJPD1_2665 98c69443040ccc3da181ced70444495b 329 PIRSF PIRSF000375 12 329 1.7E-106 T 13-10-2018 IPR016217 Nitrogen fixation, NifU SJPD1_2665 98c69443040ccc3da181ced70444495b 329 Gene3D G3DSA:1.10.10.1100 153 208 4.0E-5 T 13-10-2018 SJPD1_2665 98c69443040ccc3da181ced70444495b 329 Gene3D G3DSA:3.90.1010.10 14 152 1.8E-42 T 13-10-2018 SJPD1_2665 98c69443040ccc3da181ced70444495b 329 Pfam PF04324 BFD-like [2Fe-2S] binding domain 159 201 4.3E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain SJPD1_2665 98c69443040ccc3da181ced70444495b 329 Pfam PF01592 NifU-like N terminal domain 14 149 1.7E-44 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 SMART SM00382 85 268 1.7E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 Pfam PF00448 SRP54-type protein, GTPase domain 87 286 4.2E-73 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 Gene3D G3DSA:1.20.120.140 3 284 4.1E-93 T 13-10-2018 SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 32 285 9.7E-95 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 SUPERFAMILY SSF52540 84 287 1.61E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 Gene3D G3DSA:3.40.50.300 86 275 4.1E-93 T 13-10-2018 SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 23 287 54.403 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 SJPD1_1175 637508bc61ee57d1e693bba13bab6fca 295 SMART SM00962 86 287 1.1E-102 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 Pfam PF06719 AraC-type transcriptional regulator N-terminus 26 176 1.1E-44 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 Pfam PF12833 Helix-turn-helix domain 211 285 3.8E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 Gene3D G3DSA:1.10.10.60 184 292 4.1E-26 T 13-10-2018 SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 SUPERFAMILY SSF46689 189 239 3.85E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 SUPERFAMILY SSF46689 241 286 9.41E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 SMART SM00342 205 288 2.8E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0332 9aabe251cbe278ce09512abab54fdde8 298 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 242 284 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 Pfam PF13180 PDZ domain 101 179 6.2E-13 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 SUPERFAMILY SSF50156 75 198 3.19E-24 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 60 376 7.0E-107 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 SUPERFAMILY SSF52096 35 366 2.49E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 Gene3D G3DSA:3.90.226.10 189 359 2.2E-86 T 13-10-2018 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 Pfam PF03572 Peptidase family S41 200 361 1.5E-53 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 SMART SM00245 174 362 9.7E-73 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 SMART SM00228 101 172 1.1E-15 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 Gene3D G3DSA:2.30.42.10 101 188 2.2E-86 T 13-10-2018 SJPD1_1767 8b723959bf981b60297d10eb5ace515e 443 Gene3D G3DSA:3.30.750.44 53 337 2.2E-86 T 13-10-2018 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 Gene3D G3DSA:3.40.50.720 13 309 6.1E-94 T 13-10-2018 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 SUPERFAMILY SSF51735 6 327 1.37E-70 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 13 257 4.4E-41 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 PRINTS PR01713 Nucleotide sugar epimerase signature 291 308 2.2E-7 T 13-10-2018 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 PRINTS PR01713 Nucleotide sugar epimerase signature 230 245 2.2E-7 T 13-10-2018 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 PRINTS PR01713 Nucleotide sugar epimerase signature 251 266 2.2E-7 T 13-10-2018 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 Gene3D G3DSA:3.90.25.10 189 319 6.1E-94 T 13-10-2018 SJPD1_2253 b3bf8bed0dd6664d41a517de76b7f33d 336 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 13 327 2.6E-99 T 13-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 Pfam PF16199 Radical_SAM C-terminal domain 207 289 1.1E-18 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 SMART SM00729 20 246 5.0E-32 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 431 512 6.7E-10 T 13-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 SUPERFAMILY SSF102114 20 254 6.93E-38 T 13-10-2018 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 Gene3D G3DSA:3.80.30.20 39 268 2.0E-15 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 299 5.7E-75 T 13-10-2018 IPR005911 Protein YhcC-like GO:0051536 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 Gene3D G3DSA:3.40.50.150 312 538 3.7E-37 T 13-10-2018 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 Pfam PF04055 Radical SAM superfamily 29 199 7.6E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0304 9de7222a2a4a62e536939bae14f37624 556 SUPERFAMILY SSF53335 295 491 1.28E-17 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 227 356 9.7E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 Pfam PF13682 Chemoreceptor zinc-binding domain 368 430 1.1E-10 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 169 198 2.1E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 249 276 2.1E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 278 307 2.1E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 SUPERFAMILY SSF58104 83 385 7.19E-54 T 13-10-2018 SJPD1_0190 19b63fcef45da1b82db23885dbea3081 482 SMART SM00283 155 410 2.0E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 Pfam PF00586 AIR synthase related protein, N-terminal domain 47 154 6.0E-14 T 13-10-2018 IPR016188 PurM-like, N-terminal domain SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 SUPERFAMILY SSF56042 161 328 4.19E-44 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 PIRSF PIRSF036407 1 343 8.9E-114 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 Gene3D G3DSA:3.90.650.10 161 339 8.1E-51 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 Pfam PF02769 AIR synthase related protein, C-terminal domain 167 333 3.6E-24 T 13-10-2018 IPR010918 PurM-like, C-terminal domain SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 Gene3D G3DSA:3.30.1330.10 1 160 6.4E-40 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 Hamap MF_00625 Selenide, water dikinase [selD]. 4 343 38.893 T 13-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 TIGRFAM TIGR00476 selD: selenide, water dikinase 6 310 1.2E-107 T 13-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 SJPD1_2543 ab5689536af003daa00cf80dbabad12a 343 SUPERFAMILY SSF55326 7 159 2.69E-35 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_0122 4707a3d01dba18d3f771158ae6b9cfbc 394 Gene3D G3DSA:3.30.1490.330 274 352 6.6E-21 T 13-10-2018 SJPD1_0122 4707a3d01dba18d3f771158ae6b9cfbc 394 SUPERFAMILY SSF56059 13 391 1.77E-59 T 13-10-2018 SJPD1_0122 4707a3d01dba18d3f771158ae6b9cfbc 394 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 14 392 1.2E-119 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain SJPD1_0122 4707a3d01dba18d3f771158ae6b9cfbc 394 SUPERFAMILY SSF52440 180 290 1.35E-14 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 112 2.4E-47 T 13-10-2018 IPR004624 PhnA protein SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 Pfam PF08274 PhnA Zinc-Ribbon 2 31 1.2E-13 T 13-10-2018 IPR013987 PhnA protein, N-terminal SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 Pfam PF03831 PhnA domain 44 112 9.2E-32 T 13-10-2018 IPR013988 PhnA protein, C-terminal SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 Gene3D G3DSA:2.30.30.40 41 112 1.8E-31 T 13-10-2018 SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 Gene3D G3DSA:2.20.25.10 1 40 1.4E-18 T 13-10-2018 SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 SUPERFAMILY SSF57783 1 35 9.86E-14 T 13-10-2018 SJPD1_1934 9cb10f5c7a5d623def8781c67279f124 112 SUPERFAMILY SSF82057 39 112 3.52E-25 T 13-10-2018 SJPD1_2637 8ff92008137e12909d6beb8efd68b475 259 Gene3D G3DSA:3.40.50.300 1 256 7.3E-61 T 13-10-2018 SJPD1_2637 8ff92008137e12909d6beb8efd68b475 259 SUPERFAMILY SSF52540 3 216 1.52E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2637 8ff92008137e12909d6beb8efd68b475 259 Pfam PF00005 ABC transporter 19 168 2.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2637 8ff92008137e12909d6beb8efd68b475 259 SMART SM00382 28 218 5.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2637 8ff92008137e12909d6beb8efd68b475 259 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Pfam PF00384 Molybdopterin oxidoreductase 97 525 9.7E-72 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Pfam PF01568 Molydopterin dinucleotide binding domain 641 734 1.8E-13 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 SUPERFAMILY SSF53706 41 620 6.02E-130 T 13-10-2018 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 41 93 5.2E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Gene3D G3DSA:3.40.228.10 180 371 6.7E-127 T 13-10-2018 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 SUPERFAMILY SSF50692 602 738 5.88E-23 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 45 62 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Gene3D G3DSA:2.20.25.90 35 97 3.0E-14 T 13-10-2018 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Gene3D G3DSA:3.40.50.740 98 556 6.7E-127 T 13-10-2018 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 Gene3D G3DSA:2.40.40.20 630 761 6.0E-31 T 13-10-2018 SJPD1_0309 c6a3bc30d415878b9669cede426834b8 761 SMART SM00926 40 94 4.0E-7 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2124 9a34681efb7b5de10c54f3eacc479e98 397 Gene3D G3DSA:1.20.1250.20 19 388 2.7E-41 T 13-10-2018 SJPD1_2124 9a34681efb7b5de10c54f3eacc479e98 397 Pfam PF07690 Major Facilitator Superfamily 26 321 9.8E-26 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2124 9a34681efb7b5de10c54f3eacc479e98 397 SUPERFAMILY SSF103473 19 391 3.4E-45 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Pfam PF00271 Helicase conserved C-terminal domain 445 546 5.2E-18 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Pfam PF02151 UvrB/uvrC motif 623 657 3.9E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Gene3D G3DSA:3.40.50.300 1 241 1.2E-70 T 13-10-2018 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 SMART SM00487 8 428 3.5E-25 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Gene3D G3DSA:3.40.50.300 417 591 1.5E-48 T 13-10-2018 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 SMART SM00490 462 548 1.1E-18 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 SUPERFAMILY SSF52540 3 417 1.29E-126 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 658 41.543 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 SUPERFAMILY SSF46600 610 657 5.62E-11 T 13-10-2018 IPR036876 UVR domain superfamily SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Gene3D G3DSA:4.10.860.10 603 658 1.0E-8 T 13-10-2018 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Pfam PF04851 Type III restriction enzyme, res subunit 15 118 1.5E-11 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Pfam PF12344 Ultra-violet resistance protein B 554 595 1.3E-19 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 656 4.3E-302 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 SUPERFAMILY SSF52540 34 591 6.22E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1987 ae50d24dbdec4b37eee3c88566cb3fdc 658 Gene3D G3DSA:3.40.50.300 257 416 2.5E-45 T 13-10-2018 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Gene3D G3DSA:3.90.980.10 102 227 7.2E-29 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 PIRSF PIRSF002811 1 547 5.5E-138 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Pfam PF16730 DnaG-primase C-terminal, helicase-binding domain 428 545 1.1E-39 T 13-10-2018 IPR031988 DNA primase DnaG, C-terminal helicase-binding domain SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Gene3D G3DSA:1.10.860.10 424 550 9.3E-31 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 SUPERFAMILY SSF57783 1 97 1.17E-34 T 13-10-2018 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 SUPERFAMILY SSF56731 108 406 1.7E-84 T 13-10-2018 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Hamap MF_00974 DNA primase [dnaG]. 1 536 25.458 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 SMART SM00493 246 317 1.7E-17 T 13-10-2018 IPR006171 TOPRIM domain SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Pfam PF10410 DnaB-helicase binding domain of primase 353 404 2.0E-7 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Gene3D G3DSA:3.40.1360.10 228 351 5.2E-34 T 13-10-2018 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Pfam PF08275 DNA primase catalytic core, N-terminal domain 116 238 3.3E-32 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 TIGRFAM TIGR01391 dnaG: DNA primase 1 401 9.1E-132 T 13-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Pfam PF13662 Toprim domain 247 321 6.7E-17 T 13-10-2018 IPR006171 TOPRIM domain SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 SMART SM00400 33 87 9.7E-31 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Pfam PF01807 CHC2 zinc finger 3 97 7.6E-37 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 SJPD1_2449 2290d1df979002287e8061f54c0594a9 552 Gene3D G3DSA:3.90.580.10 3 98 3.2E-37 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 SUPERFAMILY SSF82866 313 512 9.16E-43 T 13-10-2018 SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 266 496 1.7E-81 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 Pfam PF02355 Protein export membrane protein 339 503 1.5E-16 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 Gene3D G3DSA:3.30.70.3400 135 340 3.0E-58 T 13-10-2018 SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 Gene3D G3DSA:3.30.1360.200 194 334 3.0E-58 T 13-10-2018 SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 Gene3D G3DSA:1.20.1640.10 351 497 4.4E-9 T 13-10-2018 SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 39 501 8.5E-144 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 SJPD1_2007 f4824886800ef28b3bb3197c50ff1d8f 526 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 518 41.17 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 SJPD1_1493 3dc75e782d46cb71a43489ee116bbfcf 210 Pfam PF13487 HD domain 88 148 1.4E-20 T 13-10-2018 SJPD1_1493 3dc75e782d46cb71a43489ee116bbfcf 210 SUPERFAMILY SSF109604 25 195 2.46E-36 T 13-10-2018 SJPD1_1493 3dc75e782d46cb71a43489ee116bbfcf 210 Gene3D G3DSA:1.10.3210.10 13 206 9.6E-66 T 13-10-2018 SJPD1_1493 3dc75e782d46cb71a43489ee116bbfcf 210 TIGRFAM TIGR00277 HDIG: HDIG domain 38 125 2.3E-7 T 13-10-2018 IPR006675 HDIG domain SJPD1_1493 3dc75e782d46cb71a43489ee116bbfcf 210 SMART SM00471 31 166 8.5E-9 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_2321 3d8e0d9425894022037a5befb946f64f 263 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2321 3d8e0d9425894022037a5befb946f64f 263 Gene3D G3DSA:3.40.50.300 7 259 2.7E-62 T 13-10-2018 SJPD1_2321 3d8e0d9425894022037a5befb946f64f 263 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 13 263 9.4E-115 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 SJPD1_2321 3d8e0d9425894022037a5befb946f64f 263 SUPERFAMILY SSF52540 13 257 2.18E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2321 3d8e0d9425894022037a5befb946f64f 263 SMART SM00382 39 235 1.9E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2321 3d8e0d9425894022037a5befb946f64f 263 Pfam PF00005 ABC transporter 30 188 3.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 SUPERFAMILY SSF50156 77 165 6.92E-18 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 SMART SM00245 157 365 2.4E-31 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 90 152 9.8E-11 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 Gene3D G3DSA:2.30.42.10 84 171 5.6E-63 T 13-10-2018 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 SUPERFAMILY SSF52096 22 369 2.49E-51 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 45 370 1.3E-66 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 SMART SM00228 84 155 5.0E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 Gene3D G3DSA:3.30.750.44 22 340 5.6E-63 T 13-10-2018 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 Gene3D G3DSA:3.90.226.10 172 362 5.6E-63 T 13-10-2018 SJPD1_0608 80dab69e319e3bbc425bc2e0c4d6240f 385 Pfam PF03572 Peptidase family S41 182 364 4.2E-38 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:3.30.70.1430 567 668 0.0 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82693 139 332 3.14E-26 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82714 722 806 9.42E-22 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82866 831 1026 3.53E-46 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82866 298 500 1.83E-49 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:3.30.2090.10 721 809 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82693 673 857 9.42E-26 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1030 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:3.30.70.1430 39 817 0.0 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82693 565 671 3.61E-26 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:1.20.1640.10 513 1023 0.0 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82693 39 133 1.15E-26 T 13-10-2018 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 1.3E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 SUPERFAMILY SSF82714 184 273 3.53E-21 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2108 ca047c0b1cc9947a937b5f472c7e1fd5 1042 Gene3D G3DSA:3.30.70.1440 669 866 0.0 T 13-10-2018 SJPD1_1162 d0329529afd104eb6d441ae54fcf49bb 256 Pfam PF02481 DNA recombination-mediator protein A 12 194 1.6E-50 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 SJPD1_1162 d0329529afd104eb6d441ae54fcf49bb 256 SUPERFAMILY SSF102405 12 191 5.49E-23 T 13-10-2018 SJPD1_1162 d0329529afd104eb6d441ae54fcf49bb 256 Gene3D G3DSA:3.40.50.450 4 210 1.4E-58 T 13-10-2018 SJPD1_2462 2272bbec3d3d0c54cdf5dceb2621c927 661 Gene3D G3DSA:1.10.287.950 331 596 2.8E-67 T 13-10-2018 SJPD1_2462 2272bbec3d3d0c54cdf5dceb2621c927 661 SUPERFAMILY SSF58104 349 596 2.62E-60 T 13-10-2018 SJPD1_2462 2272bbec3d3d0c54cdf5dceb2621c927 661 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 408 563 1.8E-46 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2462 2272bbec3d3d0c54cdf5dceb2621c927 661 Pfam PF12729 Four helix bundle sensory module for signal transduction 4 135 1.0E-8 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_2462 2272bbec3d3d0c54cdf5dceb2621c927 661 SMART SM00283 348 595 1.0E-74 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0879 37b8fce446e143fbc887568370ed5304 315 SMART SM00320 275 313 0.055 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 SJPD1_0879 37b8fce446e143fbc887568370ed5304 315 SMART SM00320 151 190 9.9 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 SJPD1_0879 37b8fce446e143fbc887568370ed5304 315 SMART SM00320 193 231 36.0 T 13-10-2018 IPR001680 WD40 repeat GO:0005515 SJPD1_0879 37b8fce446e143fbc887568370ed5304 315 SUPERFAMILY SSF50978 30 314 7.94E-26 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 SJPD1_0879 37b8fce446e143fbc887568370ed5304 315 Gene3D G3DSA:2.130.10.10 19 240 2.2E-17 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 SJPD1_0879 37b8fce446e143fbc887568370ed5304 315 Gene3D G3DSA:2.130.10.10 241 315 5.4E-6 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 SUPERFAMILY SSF56053 83 175 1.38E-33 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 SUPERFAMILY SSF56053 2 82 5.52E-16 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 Pfam PF00347 Ribosomal protein L6 11 82 3.4E-7 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 Pfam PF00347 Ribosomal protein L6 91 163 2.2E-20 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 175 33.416 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 Gene3D G3DSA:3.90.930.12 1 82 1.8E-19 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 153 161 - T 13-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 PIRSF PIRSF002162 1 176 1.7E-42 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 PRINTS PR00059 Ribosomal protein L6 signature 71 96 5.1E-32 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 PRINTS PR00059 Ribosomal protein L6 signature 99 115 5.1E-32 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 PRINTS PR00059 Ribosomal protein L6 signature 140 161 5.1E-32 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 175 6.9E-65 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 SJPD1_2424 58856ddb7e4e72bd162dd3dec0239bf8 178 Gene3D G3DSA:3.90.930.12 83 178 1.2E-36 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 SUPERFAMILY SSF52540 178 449 4.15E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Gene3D G3DSA:1.10.8.60 355 432 3.8E-24 T 13-10-2018 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Pfam PF01434 Peptidase family M41 417 621 2.4E-69 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 SMART SM00382 215 356 3.9E-24 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Pfam PF06480 FtsH Extracellular 25 122 7.0E-6 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 131 622 1.1E-214 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 ProSitePatterns PS00674 AAA-protein family signature. 324 342 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Gene3D G3DSA:3.40.50.300 173 353 3.2E-69 T 13-10-2018 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 219 352 1.1E-44 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 SUPERFAMILY SSF140990 436 627 7.46E-62 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 21 649 34.698 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 SJPD1_2218 f47c411dc396de34cd110558566856d9 654 Gene3D G3DSA:1.20.58.760 436 636 6.4E-65 T 13-10-2018 SJPD1_0854 78fae2cbee11f3a4bd150261cfdf7477 363 SUPERFAMILY SSF56112 3 355 5.61E-53 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily SJPD1_0854 78fae2cbee11f3a4bd150261cfdf7477 363 Gene3D G3DSA:3.90.1200.10 126 359 1.7E-37 T 13-10-2018 SJPD1_0854 78fae2cbee11f3a4bd150261cfdf7477 363 Gene3D G3DSA:3.30.200.20 1 110 9.5E-31 T 13-10-2018 SJPD1_0854 78fae2cbee11f3a4bd150261cfdf7477 363 Pfam PF01636 Phosphotransferase enzyme family 115 250 3.9E-9 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase SJPD1_1701 6eb84ffe0c9ccaed65e50765542fe046 270 Pfam PF13145 PPIC-type PPIASE domain 110 239 1.1E-21 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 SJPD1_1701 6eb84ffe0c9ccaed65e50765542fe046 270 SUPERFAMILY SSF54534 122 225 2.09E-25 T 13-10-2018 SJPD1_1701 6eb84ffe0c9ccaed65e50765542fe046 270 SUPERFAMILY SSF109998 22 152 3.06E-17 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily SJPD1_1701 6eb84ffe0c9ccaed65e50765542fe046 270 Gene3D G3DSA:1.10.8.1040 21 80 1.3E-12 T 13-10-2018 SJPD1_1701 6eb84ffe0c9ccaed65e50765542fe046 270 Gene3D G3DSA:3.10.50.40 126 232 1.6E-36 T 13-10-2018 SJPD1_0678 8b9c7c11489b7e58fd293d3398dd7e1b 204 Gene3D G3DSA:3.30.2010.10 107 201 6.5E-20 T 13-10-2018 SJPD1_0678 8b9c7c11489b7e58fd293d3398dd7e1b 204 Pfam PF01863 Protein of unknown function DUF45 94 198 7.1E-34 T 13-10-2018 IPR002725 Protein of unknown function DUF45 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 Gene3D G3DSA:2.40.50.180 40 159 8.0E-32 T 13-10-2018 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 Gene3D G3DSA:3.40.50.2300 180 316 8.7E-23 T 13-10-2018 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 SMART SM00448 182 308 4.5E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 SUPERFAMILY SSF52172 183 309 1.21E-23 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0236 43cfd57c81513072a51de74961095f36 316 Gene3D G3DSA:2.30.30.40 32 154 8.0E-32 T 13-10-2018 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 SUPERFAMILY SSF50341 31 162 1.83E-29 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 PIRSF PIRSF002867 1 312 7.0E-98 T 13-10-2018 IPR024181 Chemotaxis response regulator CheV SJPD1_0236 43cfd57c81513072a51de74961095f36 316 Pfam PF00072 Response regulator receiver domain 185 294 7.2E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 Pfam PF01584 CheW-like domain 32 162 3.6E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_0236 43cfd57c81513072a51de74961095f36 316 SMART SM00260 11 160 1.0E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 SUPERFAMILY SSF53850 28 245 1.67E-43 T 13-10-2018 SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 Gene3D G3DSA:3.40.190.10 113 207 3.7E-63 T 13-10-2018 SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 Pfam PF00990 Diguanylate cyclase, GGDEF domain 291 442 1.6E-42 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 289 445 9.7E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 SMART SM00062 27 248 1.1E-25 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 SUPERFAMILY SSF55073 295 447 3.61E-42 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 Gene3D G3DSA:3.40.190.10 18 243 3.7E-63 T 13-10-2018 SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 244 1.3E-35 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 Gene3D G3DSA:3.30.70.270 276 448 1.5E-48 T 13-10-2018 SJPD1_1442 fdc8bcd5b27ad060720ea691c181c0df 452 SMART SM00267 279 447 3.9E-52 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 1.2E-12 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 256 274 1.2E-12 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 1.2E-12 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 91 101 1.2E-12 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 1.2E-12 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 SUPERFAMILY SSF53822 28 374 2.89E-82 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 Gene3D G3DSA:3.40.50.2300 30 351 1.8E-86 T 13-10-2018 SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 Pfam PF13458 Periplasmic binding protein 29 368 2.6E-61 T 13-10-2018 IPR028081 Leucine-binding protein domain SJPD1_0421 6f2b6c4726f2b28e5e535d7acb75326e 376 Gene3D G3DSA:3.40.50.2300 146 274 1.8E-86 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 227 800 3.5E-139 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 245 798 1.6E-151 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Pfam PF00403 Heavy-metal-associated domain 94 153 1.6E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Gene3D G3DSA:3.40.50.1000 487 748 1.7E-68 T 13-10-2018 IPR023214 HAD superfamily SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 644 654 3.2E-19 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 506 520 3.2E-19 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 356 370 3.2E-19 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 697 716 3.2E-19 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 720 732 3.2E-19 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Gene3D G3DSA:2.70.150.20 292 410 1.8E-22 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00943 Copper-transporting ATPase signature 489 504 6.7E-9 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00943 Copper-transporting ATPase signature 276 295 6.7E-9 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00943 Copper-transporting ATPase signature 135 155 6.7E-9 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00943 Copper-transporting ATPase signature 674 691 6.7E-9 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00943 Copper-transporting ATPase signature 731 745 6.7E-9 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 PRINTS PR00943 Copper-transporting ATPase signature 296 314 6.7E-9 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Pfam PF00122 E1-E2 ATPase 308 486 1.8E-43 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 278 781 1.8E-78 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 5 85 1.2E-16 T 13-10-2018 IPR021993 Putative metal-binding domain of cation transport ATPase SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 SUPERFAMILY SSF81653 309 403 2.22E-16 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Gene3D G3DSA:3.40.1110.10 517 629 1.7E-68 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Gene3D G3DSA:3.30.70.100 90 175 9.9E-14 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 508 514 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 Pfam PF00702 haloacid dehalogenase-like hydrolase 503 709 3.3E-31 T 13-10-2018 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 SUPERFAMILY SSF81665 263 783 1.83E-14 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 SUPERFAMILY SSF55008 87 161 3.27E-18 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 SJPD1_2258 c5efb79d80fce04c49e72bbeaca7f276 806 SUPERFAMILY SSF56784 504 797 1.48E-49 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SUPERFAMILY SSF52172 139 272 1.99E-25 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00091 410 476 1.4 T 13-10-2018 IPR000014 PAS domain SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00091 269 338 0.004 T 13-10-2018 IPR000014 PAS domain SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 411 527 5.8E-16 T 13-10-2018 IPR000014 PAS domain SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 274 387 4.4E-18 T 13-10-2018 IPR000014 PAS domain SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00448 15 125 2.7E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00448 138 251 5.5E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SUPERFAMILY SSF52172 16 129 3.56E-15 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00086 482 524 1.8E-6 T 13-10-2018 IPR001610 PAC motif SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00086 343 385 3.8E-6 T 13-10-2018 IPR001610 PAC motif SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SMART SM00471 549 686 2.7E-11 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SUPERFAMILY SSF55785 421 521 3.84E-26 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Gene3D G3DSA:3.40.50.2300 136 268 4.4E-24 T 13-10-2018 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Pfam PF08447 PAS fold 433 516 7.8E-13 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Pfam PF08447 PAS fold 294 378 7.3E-16 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Gene3D G3DSA:3.30.450.20 269 412 1.5E-32 T 13-10-2018 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SUPERFAMILY SSF55785 283 382 4.19E-30 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 SUPERFAMILY SSF109604 543 714 5.02E-39 T 13-10-2018 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Gene3D G3DSA:1.10.3210.10 528 730 4.7E-73 T 13-10-2018 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Pfam PF01966 HD domain 554 676 5.6E-21 T 13-10-2018 IPR006674 HD domain SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Pfam PF00072 Response regulator receiver domain 140 251 2.4E-16 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Pfam PF00072 Response regulator receiver domain 17 116 6.5E-12 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Gene3D G3DSA:3.30.450.20 413 525 7.3E-26 T 13-10-2018 SJPD1_0921 6379b3c7c5b91c269a798d4681987933 734 Gene3D G3DSA:3.40.50.2300 15 135 1.6E-15 T 13-10-2018 SJPD1_2111 a24fe61bf69c25b6b0c5466a6a063fb8 420 SUPERFAMILY SSF103473 13 417 1.96E-26 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2111 a24fe61bf69c25b6b0c5466a6a063fb8 420 Gene3D G3DSA:1.20.1250.20 7 415 5.0E-22 T 13-10-2018 SJPD1_2111 a24fe61bf69c25b6b0c5466a6a063fb8 420 Pfam PF07690 Major Facilitator Superfamily 15 379 2.0E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_1727 a09a041bba003d61b457e9e521a175e1 341 Gene3D G3DSA:3.10.310.30 274 336 2.2E-10 T 13-10-2018 SJPD1_1727 a09a041bba003d61b457e9e521a175e1 341 SUPERFAMILY SSF64182 4 321 1.36E-15 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily SJPD1_1727 a09a041bba003d61b457e9e521a175e1 341 Gene3D G3DSA:3.90.1640.10 7 139 2.4E-5 T 13-10-2018 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 SUPERFAMILY SSF55874 460 612 4.71E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 600 613 4.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 547 561 4.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 575 4.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 594 4.0E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 Gene3D G3DSA:1.10.287.130 377 457 8.9E-11 T 13-10-2018 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 Gene3D G3DSA:3.40.50.2300 146 303 2.0E-8 T 13-10-2018 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 SMART SM00387 502 616 2.4E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 Gene3D G3DSA:3.40.50.2300 71 298 2.0E-8 T 13-10-2018 SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 504 612 2.5E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 Pfam PF04392 ABC transporter substrate binding protein 84 287 1.6E-8 T 13-10-2018 IPR007487 ABC transporter, substrate-binding protein SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 Gene3D G3DSA:3.30.565.10 461 614 2.1E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2502 d510505af6f427a9a54ccce461ecadc5 616 SUPERFAMILY SSF47384 387 455 5.49E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Gene3D G3DSA:3.30.70.20 250 305 1.0E-5 T 13-10-2018 SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 257 268 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Pfam PF12801 4Fe-4S binding domain 71 96 5.2E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Pfam PF12801 4Fe-4S binding domain 188 216 15.0 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Pfam PF12801 4Fe-4S binding domain 52 58 580.0 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Pfam PF12801 4Fe-4S binding domain 154 165 170.0 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Gene3D G3DSA:3.30.70.20 204 249 5.8E-6 T 13-10-2018 SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Pfam PF00037 4Fe-4S binding domain 228 244 1.2E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 Pfam PF00037 4Fe-4S binding domain 253 272 1.5E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1518 4f4a9ce72b06966f5b2826ef46d89261 305 SUPERFAMILY SSF54862 82 288 9.94E-16 T 13-10-2018 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Pfam PF12848 ABC transporter 227 297 3.1E-7 T 13-10-2018 IPR032781 ABC-transporter extension domain SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Pfam PF16326 ABC transporter C-terminal domain 577 644 1.3E-11 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Pfam PF00005 ABC transporter 348 481 6.5E-18 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Gene3D G3DSA:3.40.50.300 297 559 2.4E-51 T 13-10-2018 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 SUPERFAMILY SSF52540 334 530 6.47E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Gene3D G3DSA:1.10.287.380 566 647 5.7E-10 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 SUPERFAMILY SSF52540 9 238 7.74E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 SMART SM00382 28 235 4.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 SMART SM00382 356 525 3.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Gene3D G3DSA:3.40.50.300 4 282 9.6E-65 T 13-10-2018 SJPD1_1803 1b55d93f17a4c9f2e12662f7d6ab6341 652 Pfam PF00005 ABC transporter 19 188 2.4E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 Gene3D G3DSA:2.40.50.100 528 601 2.6E-21 T 13-10-2018 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 SUPERFAMILY SSF89000 308 466 2.47E-37 T 13-10-2018 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 Gene3D G3DSA:3.20.20.70 1 468 3.5E-90 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 558 575 - T 13-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 Pfam PF02436 Conserved carboxylase domain 307 495 1.3E-42 T 13-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 Pfam PF00682 HMGL-like 7 280 7.6E-16 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 SUPERFAMILY SSF51230 528 601 5.89E-20 T 13-10-2018 IPR011053 Single hybrid motif SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 Pfam PF00364 Biotin-requiring enzyme 541 601 3.8E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment SJPD1_0722 c2d92d086095fdf502e81eeed985f14a 601 SUPERFAMILY SSF51569 3 296 5.86E-55 T 13-10-2018 SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 Gene3D G3DSA:3.30.70.1350 221 302 2.1E-20 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 Pfam PF01545 Cation efflux family 26 220 1.6E-46 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 300 2.1E-64 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 Pfam PF16916 Dimerisation domain of Zinc Transporter 225 300 2.2E-20 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 SUPERFAMILY SSF161111 20 221 1.57E-54 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 SUPERFAMILY SSF160240 224 301 2.49E-20 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 SJPD1_2536 1199b76d36b71041d22da21f35ff4192 304 Gene3D G3DSA:1.20.1510.10 21 220 7.6E-59 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 249 7.0E-17 T 13-10-2018 IPR000014 PAS domain SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 Gene3D G3DSA:3.30.450.20 134 251 4.7E-26 T 13-10-2018 SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 Gene3D G3DSA:3.20.20.450 408 647 1.3E-67 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 Pfam PF00072 Response regulator receiver domain 4 114 3.0E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 Pfam PF08447 PAS fold 157 241 2.3E-14 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SUPERFAMILY SSF55785 142 246 6.11E-27 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SMART SM00086 207 249 0.0043 T 13-10-2018 IPR001610 PAC motif SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SMART SM00448 1 114 2.4E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SUPERFAMILY SSF52172 1 132 6.83E-27 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 Gene3D G3DSA:3.40.50.2300 1 133 2.7E-26 T 13-10-2018 SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SUPERFAMILY SSF141868 414 644 6.02E-66 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 Pfam PF00563 EAL domain 415 644 8.5E-60 T 13-10-2018 IPR001633 EAL domain SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SMART SM00052 408 645 2.9E-55 T 13-10-2018 IPR001633 EAL domain SJPD1_0910 50b83fd358e0cc10d598f8263684a33d 647 SMART SM00091 134 201 0.0011 T 13-10-2018 IPR000014 PAS domain SJPD1_2892 526528286e9aeab84e03b38630b2f393 185 Pfam PF04011 LemA family 6 180 8.2E-62 T 13-10-2018 IPR007156 LemA SJPD1_2892 526528286e9aeab84e03b38630b2f393 185 Gene3D G3DSA:1.20.1440.20 12 180 8.1E-56 T 13-10-2018 IPR023353 LemA-like domain superfamily SJPD1_2892 526528286e9aeab84e03b38630b2f393 185 SUPERFAMILY SSF140478 22 169 3.92E-49 T 13-10-2018 IPR023353 LemA-like domain superfamily SJPD1_2831 854d9b59c13428b12934062fcd56f281 133 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 4 113 1.7E-19 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like SJPD1_2831 854d9b59c13428b12934062fcd56f281 133 SUPERFAMILY SSF110857 1 106 4.71E-19 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily SJPD1_2831 854d9b59c13428b12934062fcd56f281 133 Gene3D G3DSA:3.10.490.10 1 103 2.3E-25 T 13-10-2018 SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 Gene3D G3DSA:3.90.550.10 3 242 6.2E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 Pfam PF00483 Nucleotidyl transferase 7 214 1.3E-10 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 Gene3D G3DSA:2.160.10.10 243 414 3.9E-39 T 13-10-2018 SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 369 403 3.5E-7 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 426 33.811 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 426 3.1E-144 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 SUPERFAMILY SSF51161 243 412 1.41E-37 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 SUPERFAMILY SSF53448 1 247 3.22E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1390 0d6bac1844373798eba1f41fc5f45e50 434 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 377 405 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Pfam PF00012 Hsp70 protein 4 600 6.2E-247 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 190 203 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 13-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Gene3D G3DSA:1.20.1270.10 518 603 2.1E-24 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Gene3D G3DSA:2.60.34.10 377 516 2.0E-62 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 SUPERFAMILY SSF53067 186 375 7.41E-63 T 13-10-2018 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 31 43 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 328 344 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 3 16 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 137 157 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 463 479 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 359 379 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 382 401 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 54 62 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 PRINTS PR00301 70kDa heat shock protein signature 196 206 3.8E-77 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 600 1.3E-288 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Gene3D G3DSA:3.30.420.40 179 360 2.1E-149 T 13-10-2018 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 625 35.739 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Gene3D G3DSA:3.90.640.10 223 310 2.1E-149 T 13-10-2018 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 SUPERFAMILY SSF100920 378 534 3.01E-60 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 SUPERFAMILY SSF100934 501 601 1.06E-15 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 Gene3D G3DSA:3.30.420.40 5 373 2.1E-149 T 13-10-2018 SJPD1_1719 b33473381b0c54d7557204a62020b104 628 SUPERFAMILY SSF53067 4 183 1.45E-62 T 13-10-2018 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 Gene3D G3DSA:3.40.50.1980 178 292 1.9E-37 T 13-10-2018 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 SUPERFAMILY SSF53807 11 290 2.11E-73 T 13-10-2018 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 Pfam PF01297 Zinc-uptake complex component A periplasmic 21 287 5.2E-69 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00690 Adhesin family signature 228 246 6.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00690 Adhesin family signature 18 36 6.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00690 Adhesin family signature 175 196 6.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00690 Adhesin family signature 49 62 6.0E-11 T 13-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 Gene3D G3DSA:3.40.50.1980 16 175 1.2E-46 T 13-10-2018 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00691 Adhesin B signature 268 286 7.4E-18 T 13-10-2018 IPR006129 Adhesin B GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00691 Adhesin B signature 43 61 7.4E-18 T 13-10-2018 IPR006129 Adhesin B GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00691 Adhesin B signature 224 241 7.4E-18 T 13-10-2018 IPR006129 Adhesin B GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00691 Adhesin B signature 175 192 7.4E-18 T 13-10-2018 IPR006129 Adhesin B GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00691 Adhesin B signature 18 39 7.4E-18 T 13-10-2018 IPR006129 Adhesin B GO:0007155 SJPD1_1948 705978d486105e4c4e8fe63d03811cc7 292 PRINTS PR00691 Adhesin B signature 120 139 7.4E-18 T 13-10-2018 IPR006129 Adhesin B GO:0007155 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 130 4.7E-42 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Gene3D G3DSA:3.40.120.10 1 149 1.3E-44 T 13-10-2018 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 SUPERFAMILY SSF53738 157 257 1.73E-28 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 396 436 1.2E-6 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 SUPERFAMILY SSF53738 2 181 8.48E-45 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 443 40.418 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 366 4.1E-27 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 6.7E-22 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 SUPERFAMILY SSF53738 260 366 9.42E-25 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 SUPERFAMILY SSF55957 360 445 1.7E-14 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 437 3.5E-156 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Gene3D G3DSA:3.40.120.10 258 341 1.3E-65 T 13-10-2018 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Gene3D G3DSA:3.30.310.50 372 446 5.8E-13 T 13-10-2018 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 92 106 1.2E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 1.2E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 1.2E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 Gene3D G3DSA:3.40.120.10 175 364 1.3E-65 T 13-10-2018 SJPD1_0110 ec8e410b772f7a5c6bf300a66a410288 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 93 102 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2240 2e1b8fb3197b8881af4397df487d3d65 287 Pfam PF00483 Nucleotidyl transferase 2 238 4.1E-69 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 SJPD1_2240 2e1b8fb3197b8881af4397df487d3d65 287 Gene3D G3DSA:3.90.550.10 1 287 3.2E-85 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2240 2e1b8fb3197b8881af4397df487d3d65 287 SUPERFAMILY SSF53448 1 286 1.53E-93 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2240 2e1b8fb3197b8881af4397df487d3d65 287 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 287 1.8E-152 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 SJPD1_2251 e3d5b8985cd092a476f36c68df0a9596 190 Pfam PF13580 SIS domain 12 144 2.7E-30 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 SJPD1_2251 e3d5b8985cd092a476f36c68df0a9596 190 Gene3D G3DSA:3.40.50.10490 1 187 1.2E-76 T 13-10-2018 SJPD1_2251 e3d5b8985cd092a476f36c68df0a9596 190 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 187 37.755 T 13-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 SJPD1_2251 e3d5b8985cd092a476f36c68df0a9596 190 SUPERFAMILY SSF53697 1 186 2.43E-56 T 13-10-2018 SJPD1_2251 e3d5b8985cd092a476f36c68df0a9596 190 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 183 1.5E-68 T 13-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 SUPERFAMILY SSF52507 5 181 1.83E-55 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 Pfam PF02441 Flavoprotein 9 178 4.2E-41 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 Gene3D G3DSA:3.40.50.1950 2 187 4.4E-56 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 399 1.8E-116 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 375 9.1E-50 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 SUPERFAMILY SSF102645 174 401 2.09E-57 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 SJPD1_1389 37297aad0c5c788c69df23c0c43d3458 403 Gene3D G3DSA:3.40.50.10300 188 403 1.9E-58 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 SJPD1_1491 b40d1e841d379e4a643e75c9a0444f3c 349 Pfam PF03573 outer membrane porin, OprD family 53 348 4.6E-13 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 SJPD1_1491 b40d1e841d379e4a643e75c9a0444f3c 349 Gene3D G3DSA:2.40.160.10 36 349 2.5E-22 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Gene3D G3DSA:3.30.930.10 1 235 6.1E-106 T 13-10-2018 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Gene3D G3DSA:2.40.30.130 467 538 3.4E-7 T 13-10-2018 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Pfam PF02272 DHHA1 domain 717 841 9.1E-17 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 SMART SM00863 638 681 7.8E-21 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Pfam PF01411 tRNA synthetases class II (A) 2 540 3.0E-202 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 2 825 9.2E-287 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 SUPERFAMILY SSF55681 2 239 8.95E-101 T 13-10-2018 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Gene3D G3DSA:3.30.54.20 609 662 1.7E-49 T 13-10-2018 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 846 166.298 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 PRINTS PR00980 Alanyl-tRNA synthetase signature 220 233 6.6E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 PRINTS PR00980 Alanyl-tRNA synthetase signature 268 284 6.6E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 PRINTS PR00980 Alanyl-tRNA synthetase signature 292 305 6.6E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 PRINTS PR00980 Alanyl-tRNA synthetase signature 193 204 6.6E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 PRINTS PR00980 Alanyl-tRNA synthetase signature 71 82 6.6E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Gene3D G3DSA:3.30.980.10 547 682 1.7E-49 T 13-10-2018 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 SUPERFAMILY SSF55186 542 704 1.07E-47 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 SUPERFAMILY SSF50447 447 537 1.31E-11 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 SUPERFAMILY SSF101353 240 451 4.05E-59 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 638 681 3.6E-18 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 SJPD1_2056 3a35ce06c9b006f602174063dc8a59a8 848 Gene3D G3DSA:3.10.310.40 741 844 1.4E-23 T 13-10-2018 SJPD1_1717 20ea3d3a6d03ee7c4e42d77f69c91c92 297 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 37 262 1.7E-99 T 13-10-2018 IPR022488 Polyphosphate kinase-2-related SJPD1_1717 20ea3d3a6d03ee7c4e42d77f69c91c92 297 SUPERFAMILY SSF52540 67 255 9.52E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1717 20ea3d3a6d03ee7c4e42d77f69c91c92 297 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 37 263 1.6E-110 T 13-10-2018 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 KEGG: 00190+2.7.4.1 SJPD1_1717 20ea3d3a6d03ee7c4e42d77f69c91c92 297 PIRSF PIRSF028756 3 290 3.3E-112 T 13-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 SJPD1_1717 20ea3d3a6d03ee7c4e42d77f69c91c92 297 Gene3D G3DSA:3.40.50.300 2 283 4.4E-93 T 13-10-2018 SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 Gene3D G3DSA:1.10.1270.20 173 230 8.2E-15 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 SUPERFAMILY SSF75217 1 227 6.41E-79 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 230 80.32 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 228 2.2E-80 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 9.4E-51 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 PIRSF PIRSF000386 1 230 4.8E-81 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 SJPD1_2034 691133ed8e9b319d8aade22dfe07314b 230 Gene3D G3DSA:3.40.1280.10 1 172 1.1E-61 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SJPD1_0797 dc03326f61dd8e7348130ee56d38a800 71 SUPERFAMILY SSF63562 8 68 7.19E-16 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 SJPD1_0797 dc03326f61dd8e7348130ee56d38a800 71 Gene3D G3DSA:3.90.940.10 5 70 6.8E-16 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 SJPD1_0797 dc03326f61dd8e7348130ee56d38a800 71 Pfam PF01192 RNA polymerase Rpb6 18 64 1.8E-12 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 SJPD1_0797 dc03326f61dd8e7348130ee56d38a800 71 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 4 66 14.351 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0797 dc03326f61dd8e7348130ee56d38a800 71 SMART SM01409 11 65 4.6E-11 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 SJPD1_0797 dc03326f61dd8e7348130ee56d38a800 71 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 17 63 1.0E-9 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 SUPERFAMILY SSF52922 438 572 5.23E-24 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 SUPERFAMILY SSF52518 2 329 8.08E-66 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 1 573 36.028 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 Gene3D G3DSA:3.40.50.920 442 574 9.2E-22 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 2 572 1.8E-228 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 2 231 6.6E-87 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 Pfam PF02779 Transketolase, pyrimidine binding domain 270 427 6.8E-31 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 Pfam PF02780 Transketolase, C-terminal domain 442 563 2.0E-21 T 13-10-2018 IPR033248 Transketolase, C-terminal domain SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 ProSitePatterns PS00802 Transketolase signature 2. 373 389 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 SMART SM00861 267 431 1.1E-53 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 SUPERFAMILY SSF52518 268 442 6.67E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_0257 e385803135d1f91a19324317feadbe0c 574 Gene3D G3DSA:3.40.50.970 266 436 3.7E-58 T 13-10-2018 SJPD1_0310 fcb4b281594c0ae3821f388f157ac522 188 SUPERFAMILY SSF54862 2 184 1.26E-58 T 13-10-2018 SJPD1_0310 fcb4b281594c0ae3821f388f157ac522 188 Pfam PF13247 4Fe-4S dicluster domain 54 147 4.0E-21 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0310 fcb4b281594c0ae3821f388f157ac522 188 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 91 102 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0310 fcb4b281594c0ae3821f388f157ac522 188 Gene3D G3DSA:3.30.70.20 5 179 1.2E-54 T 13-10-2018 SJPD1_0310 fcb4b281594c0ae3821f388f157ac522 188 Gene3D G3DSA:3.30.70.20 65 117 1.2E-54 T 13-10-2018 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 17.668 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.2E-19 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 Gene3D G3DSA:1.20.5.1150 16 56 3.0E-7 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 43 1.0E-7 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 3.6E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 3.6E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 3.6E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 3.6E-8 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0119 7282f1b48286047b4eb3a55a5de29f6e 70 Pfam PF01165 Ribosomal protein S21 4 56 2.2E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0264 e4eeafa76f4e6e19857824458426a4a1 50 SUPERFAMILY SSF57829 1 50 3.05E-12 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 SJPD1_0264 e4eeafa76f4e6e19857824458426a4a1 50 Pfam PF01783 Ribosomal L32p protein family 2 50 4.3E-12 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0264 e4eeafa76f4e6e19857824458426a4a1 50 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 49 14.381 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0264 e4eeafa76f4e6e19857824458426a4a1 50 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 50 1.5E-16 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1599 9b7c6a6417b6f52c527fc6cff15c1826 270 Hamap MF_00134_A Indole-3-glycerol phosphate synthase [trpC]. 41 264 30.275 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 SJPD1_1599 9b7c6a6417b6f52c527fc6cff15c1826 270 Gene3D G3DSA:3.20.20.70 3 269 5.9E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1599 9b7c6a6417b6f52c527fc6cff15c1826 270 Pfam PF00218 Indole-3-glycerol phosphate synthase 11 264 1.0E-86 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 SJPD1_1599 9b7c6a6417b6f52c527fc6cff15c1826 270 SUPERFAMILY SSF51366 19 267 9.42E-83 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_1599 9b7c6a6417b6f52c527fc6cff15c1826 270 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 9 268 33.975 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 SJPD1_1599 9b7c6a6417b6f52c527fc6cff15c1826 270 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 62 80 - T 13-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 SJPD1_1355 9c697f0f746a5456c4e5387c481ced4d 432 Gene3D G3DSA:3.30.300.30 328 431 4.6E-30 T 13-10-2018 SJPD1_1355 9c697f0f746a5456c4e5387c481ced4d 432 PIRSF PIRSF006444 1 432 1.1E-192 T 13-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 SJPD1_1355 9c697f0f746a5456c4e5387c481ced4d 432 Pfam PF14535 AMP-binding enzyme C-terminal domain 334 430 9.3E-29 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal SJPD1_1355 9c697f0f746a5456c4e5387c481ced4d 432 Pfam PF00501 AMP-binding enzyme 77 285 2.0E-13 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_1355 9c697f0f746a5456c4e5387c481ced4d 432 Gene3D G3DSA:3.40.50.12780 1 327 1.6E-123 T 13-10-2018 SJPD1_1355 9c697f0f746a5456c4e5387c481ced4d 432 SUPERFAMILY SSF56801 35 394 6.15E-51 T 13-10-2018 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 Gene3D G3DSA:3.20.20.70 1 324 2.0E-141 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 SUPERFAMILY SSF51569 2 322 1.61E-137 T 13-10-2018 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 188 207 5.3E-55 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 150 169 5.3E-55 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 265 280 5.3E-55 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 295 314 5.3E-55 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 118 132 5.3E-55 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 240 256 5.3E-55 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 3 319 2.0E-143 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 SMART SM01004 1 321 6.3E-221 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 240 252 - T 13-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_0493 c1afc78e48308eb07efa92e60167be30 324 PIRSF PIRSF001415 1 324 2.2E-145 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 SJPD1_2273 7add81ed92b786c354f7fa56bfa68400 421 Gene3D G3DSA:1.20.810.10 2 419 5.8E-131 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 SJPD1_2273 7add81ed92b786c354f7fa56bfa68400 421 SUPERFAMILY SSF81648 243 389 1.7E-34 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_2273 7add81ed92b786c354f7fa56bfa68400 421 SUPERFAMILY SSF81342 12 289 5.02E-82 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_2273 7add81ed92b786c354f7fa56bfa68400 421 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 287 396 5.1E-27 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_2273 7add81ed92b786c354f7fa56bfa68400 421 Pfam PF00033 Cytochrome b/b6/petB 29 215 8.8E-58 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 Gene3D G3DSA:1.10.238.260 282 392 9.3E-39 T 13-10-2018 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 198 211 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 SUPERFAMILY SSF110921 401 500 2.35E-19 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 Pfam PF00682 HMGL-like 5 273 1.1E-99 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 Gene3D G3DSA:3.20.20.70 2 277 4.0E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 13 29 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 SUPERFAMILY SSF51569 3 291 4.94E-97 T 13-10-2018 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 5 499 1.6E-210 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 501 2.2E-25 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 SMART SM00917 369 502 4.4E-29 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 3 511 42.144 T 13-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2215 ac1a4bfe21e163acfdc538941cbfc116 519 Gene3D G3DSA:3.30.160.270 393 502 1.4E-9 T 13-10-2018 SJPD1_1240 b8956158b168d0a7b5c4f0a953c49465 210 Gene3D G3DSA:1.10.3820.10 8 184 2.3E-30 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily SJPD1_1240 b8956158b168d0a7b5c4f0a953c49465 210 PIRSF PIRSF000013 7 174 1.1E-12 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 SJPD1_1240 b8956158b168d0a7b5c4f0a953c49465 210 PIRSF PIRSF000013 85 209 0.003 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 SJPD1_1240 b8956158b168d0a7b5c4f0a953c49465 210 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 12 175 1.5E-33 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal SJPD1_1240 b8956158b168d0a7b5c4f0a953c49465 210 SUPERFAMILY SSF48695 16 174 4.19E-19 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 SUPERFAMILY SSF103088 222 334 2.22E-37 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 Pfam PF00691 OmpA family 234 328 3.2E-25 T 13-10-2018 IPR006665 OmpA-like domain SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 Pfam PF13505 Outer membrane protein beta-barrel domain 9 162 1.7E-10 T 13-10-2018 IPR027385 Outer membrane protein beta-barrel SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 Gene3D G3DSA:2.40.160.20 16 171 1.2E-22 T 13-10-2018 SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 PRINTS PR01021 OMPA domain signature 264 279 4.5E-16 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 PRINTS PR01021 OMPA domain signature 279 295 4.5E-16 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 PRINTS PR01021 OMPA domain signature 234 256 4.5E-16 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 Gene3D G3DSA:3.30.1330.60 221 336 1.5E-40 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 SUPERFAMILY SSF103647 194 229 8.37E-10 T 13-10-2018 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 SJPD1_2366 9ee7186270d5891b1c74b40f8b13c056 336 SUPERFAMILY SSF56925 24 174 1.36E-17 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel SJPD1_2369 b482072e6d60657f0e5d68fe79a144f7 293 SUPERFAMILY SSF51215 27 168 2.62E-6 T 13-10-2018 IPR037923 Transcription regulator HTH-like SJPD1_2369 b482072e6d60657f0e5d68fe79a144f7 293 SMART SM00342 202 285 2.3E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2369 b482072e6d60657f0e5d68fe79a144f7 293 SUPERFAMILY SSF46689 239 284 3.4E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2369 b482072e6d60657f0e5d68fe79a144f7 293 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 239 281 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_2369 b482072e6d60657f0e5d68fe79a144f7 293 Pfam PF12833 Helix-turn-helix domain 209 283 4.8E-15 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2369 b482072e6d60657f0e5d68fe79a144f7 293 Gene3D G3DSA:1.10.10.60 190 289 4.8E-21 T 13-10-2018 SJPD1_1691 b036333feed2c46fe23626179d1ad1da 420 Gene3D G3DSA:3.90.1150.10 285 420 1.2E-47 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1691 b036333feed2c46fe23626179d1ad1da 420 PIRSF PIRSF001434 1 420 1.6E-122 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 SJPD1_1691 b036333feed2c46fe23626179d1ad1da 420 Gene3D G3DSA:3.40.640.10 1 284 8.2E-92 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1691 b036333feed2c46fe23626179d1ad1da 420 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 3 419 1.6E-166 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 SJPD1_1691 b036333feed2c46fe23626179d1ad1da 420 SUPERFAMILY SSF53383 1 419 6.45E-107 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1691 b036333feed2c46fe23626179d1ad1da 420 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 419 2.9E-128 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 SJPD1_2528 1b12483eb0f5ba90b25ba909614e39f2 222 Gene3D G3DSA:1.10.3720.10 8 222 7.9E-55 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2528 1b12483eb0f5ba90b25ba909614e39f2 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 19 115 3.9E-21 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 SJPD1_2528 1b12483eb0f5ba90b25ba909614e39f2 222 SUPERFAMILY SSF161098 20 209 1.7E-45 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2528 1b12483eb0f5ba90b25ba909614e39f2 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 221 2.6E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 Gene3D G3DSA:3.30.450.20 326 441 3.3E-20 T 13-10-2018 SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 454 570 5.4E-18 T 13-10-2018 IPR000014 PAS domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 574 742 2.4E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 Gene3D G3DSA:3.30.450.20 452 573 2.8E-33 T 13-10-2018 SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SUPERFAMILY SSF55785 461 563 3.49E-27 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 Pfam PF00990 Diguanylate cyclase, GGDEF domain 577 740 9.7E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SMART SM00267 566 744 1.1E-56 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 Pfam PF13426 PAS domain 463 565 2.8E-17 T 13-10-2018 IPR000014 PAS domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SMART SM00091 452 518 0.001 T 13-10-2018 IPR000014 PAS domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SMART SM00091 329 397 1.8E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 Pfam PF08447 PAS fold 351 439 3.3E-15 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SUPERFAMILY SSF55785 336 448 1.27E-13 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SUPERFAMILY SSF55073 582 745 2.51E-45 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 Gene3D G3DSA:3.30.70.270 574 748 1.2E-56 T 13-10-2018 SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SMART SM00086 524 566 0.0043 T 13-10-2018 IPR001610 PAC motif SJPD1_2547 f894f17c34e88414eed24f36765e36e3 748 SMART SM00086 403 446 3.1 T 13-10-2018 IPR001610 PAC motif SJPD1_0094 605c1e4fd43cb371e55b4d6db5796f0f 252 SUPERFAMILY SSF51366 5 251 7.85E-84 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_0094 605c1e4fd43cb371e55b4d6db5796f0f 252 Gene3D G3DSA:3.20.20.70 3 252 1.1E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0094 605c1e4fd43cb371e55b4d6db5796f0f 252 Pfam PF00977 Histidine biosynthesis protein 7 234 2.8E-91 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 SJPD1_0094 605c1e4fd43cb371e55b4d6db5796f0f 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 3 251 48.95 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 SJPD1_0094 605c1e4fd43cb371e55b4d6db5796f0f 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 4 251 4.1E-113 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 SJPD1_1190 0a22272d15816815887bb7f7ea706013 350 SMART SM00897 20 190 2.3E-7 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_1190 0a22272d15816815887bb7f7ea706013 350 Pfam PF08495 FIST N domain 38 187 2.4E-13 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_1190 0a22272d15816815887bb7f7ea706013 350 Pfam PF10442 FIST C domain 191 331 5.6E-18 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_1190 0a22272d15816815887bb7f7ea706013 350 SMART SM01204 191 333 1.0E-16 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 425 30.694 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 PIRSF PIRSF000505 1 427 5.0E-107 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 Gene3D G3DSA:3.65.10.10 23 231 1.1E-126 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 ProSitePatterns PS00104 EPSP synthase signature 1. 88 102 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 18 418 2.8E-111 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 19 424 3.3E-119 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 Gene3D G3DSA:3.65.10.10 19 418 1.1E-126 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 13-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 SJPD1_0728 f4a29451f3e40fbb4e2a25c1f7cf876a 427 SUPERFAMILY SSF55205 19 423 8.18E-112 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 SJPD1_1709 af6d55085f5eecae3692de61a41c3ed9 255 SUPERFAMILY SSF52402 4 248 3.53E-68 T 13-10-2018 SJPD1_1709 af6d55085f5eecae3692de61a41c3ed9 255 Pfam PF02540 NAD synthase 9 246 2.0E-78 T 13-10-2018 IPR022310 NAD/GMP synthase SJPD1_1709 af6d55085f5eecae3692de61a41c3ed9 255 Gene3D G3DSA:3.40.50.620 2 251 2.9E-81 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1709 af6d55085f5eecae3692de61a41c3ed9 255 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 3 249 47.613 T 13-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 SJPD1_1709 af6d55085f5eecae3692de61a41c3ed9 255 TIGRFAM TIGR00552 nadE: NAD+ synthetase 4 249 8.2E-76 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 SJPD1_1539 c7e940cb5c3fd3437f7051b82799c328 242 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 208 1.4E-38 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_1539 c7e940cb5c3fd3437f7051b82799c328 242 Gene3D G3DSA:3.30.950.10 112 239 9.3E-53 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1539 c7e940cb5c3fd3437f7051b82799c328 242 Gene3D G3DSA:3.40.1010.10 1 111 1.8E-29 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1539 c7e940cb5c3fd3437f7051b82799c328 242 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 5 240 1.8E-90 T 13-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 SJPD1_1539 c7e940cb5c3fd3437f7051b82799c328 242 SUPERFAMILY SSF53790 2 241 2.75E-57 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_1539 c7e940cb5c3fd3437f7051b82799c328 242 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 76 109 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82714 710 793 4.71E-13 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82866 299 491 1.83E-37 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Pfam PF00873 AcrB/AcrD/AcrF family 7 1007 3.9E-165 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:3.30.70.1440 656 854 2.2E-249 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82714 187 269 2.62E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:1.20.1640.10 505 1006 2.2E-249 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:3.30.70.1430 555 655 2.2E-249 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82866 790 1013 1.44E-42 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82693 139 326 1.1E-16 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:3.30.70.1320 138 329 2.2E-249 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:3.30.2090.10 182 271 2.2E-249 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82693 43 137 2.93E-18 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:3.30.70.1430 43 802 2.2E-249 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:1.20.1640.10 15 504 2.2E-249 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 PRINTS PR00702 Acriflavin resistance protein family signature 333 356 2.4E-21 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 PRINTS PR00702 Acriflavin resistance protein family signature 387 411 2.4E-21 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 PRINTS PR00702 Acriflavin resistance protein family signature 465 488 2.4E-21 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 2.4E-21 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 2.4E-21 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 SUPERFAMILY SSF82693 557 651 5.23E-5 T 13-10-2018 SJPD1_1347 fbc7d8bf3bc930c5d513d503b7694b62 1018 Gene3D G3DSA:3.30.2090.10 707 794 2.2E-249 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 Gene3D G3DSA:1.10.287.130 224 291 5.1E-10 T 13-10-2018 SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 SUPERFAMILY SSF47384 207 289 1.61E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 443 2.2E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 SUPERFAMILY SSF55874 281 443 3.01E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 SUPERFAMILY SSF158472 173 221 1.19E-5 T 13-10-2018 SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 Gene3D G3DSA:1.20.1480.50 136 223 1.3E-5 T 13-10-2018 SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 SMART SM00387 335 445 1.8E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 Gene3D G3DSA:3.30.565.10 296 445 2.8E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0217 e07f336f05c44af01fc91da7780418c5 445 SMART SM00388 224 290 4.5E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 Pfam PF10442 FIST C domain 216 338 5.0E-11 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 SMART SM00388 420 482 1.4E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 Pfam PF00512 His Kinase A (phospho-acceptor) domain 421 480 2.4E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 528 618 9.0E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 Gene3D G3DSA:3.30.565.10 485 630 1.2E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 SUPERFAMILY SSF47384 407 479 1.28E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 SMART SM01204 216 339 1.8E-19 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 SUPERFAMILY SSF55874 487 620 1.57E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 SMART SM00897 26 215 1.4E-29 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 Pfam PF08495 FIST N domain 29 214 1.6E-29 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 Gene3D G3DSA:1.10.287.130 400 481 2.7E-6 T 13-10-2018 SJPD1_1856 89dacaaf799ae1e0b01b8ef00e13eac3 632 SMART SM00387 526 631 1.4E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 72 202 1.0E-10 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 Pfam PF00563 EAL domain 237 464 1.2E-55 T 13-10-2018 IPR001633 EAL domain SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 SUPERFAMILY SSF141868 237 466 6.54E-63 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 SUPERFAMILY SSF55073 73 212 7.61E-16 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 Gene3D G3DSA:3.30.70.270 68 231 4.8E-21 T 13-10-2018 SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 SMART SM00052 230 469 1.1E-52 T 13-10-2018 IPR001633 EAL domain SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 SMART SM00267 56 218 5.7E-10 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 Gene3D G3DSA:3.20.20.450 232 469 2.0E-65 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2259 4222dbb79bc8edced05786c6d7c246d8 474 Pfam PF00990 Diguanylate cyclase, GGDEF domain 69 211 2.2E-13 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1018 d9dc1647defa52c14e8584dc2b3ce9c2 437 Gene3D G3DSA:1.10.1070.20 299 433 4.1E-5 T 13-10-2018 SJPD1_1018 d9dc1647defa52c14e8584dc2b3ce9c2 437 Pfam PF07804 HipA-like C-terminal domain 173 410 1.9E-45 T 13-10-2018 IPR012893 HipA-like, C-terminal SJPD1_1018 d9dc1647defa52c14e8584dc2b3ce9c2 437 Pfam PF13657 HipA N-terminal domain 6 118 2.0E-17 T 13-10-2018 IPR017508 HipA, N-terminal subdomain 1 SJPD1_1946 3ed5d863930d9ebcba5df7317b17cadc 249 Gene3D G3DSA:3.40.50.300 2 247 1.6E-56 T 13-10-2018 SJPD1_1946 3ed5d863930d9ebcba5df7317b17cadc 249 SMART SM00382 31 219 2.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1946 3ed5d863930d9ebcba5df7317b17cadc 249 SUPERFAMILY SSF52540 7 227 3.12E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1946 3ed5d863930d9ebcba5df7317b17cadc 249 Pfam PF00005 ABC transporter 23 168 2.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1946 3ed5d863930d9ebcba5df7317b17cadc 249 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 Gene3D G3DSA:3.30.70.270 165 331 8.6E-20 T 13-10-2018 SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 SUPERFAMILY SSF55073 183 333 9.42E-17 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 Gene3D G3DSA:3.40.50.2300 9 159 2.4E-27 T 13-10-2018 SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 SMART SM00052 344 590 5.3E-32 T 13-10-2018 IPR001633 EAL domain SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 SUPERFAMILY SSF52172 14 178 9.53E-29 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 Pfam PF00072 Response regulator receiver domain 18 141 7.3E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 SMART SM00448 16 143 7.5E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 Gene3D G3DSA:3.20.20.450 346 589 6.7E-53 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 SMART SM00267 167 333 4.9E-11 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 Pfam PF00990 Diguanylate cyclase, GGDEF domain 179 326 6.9E-15 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 Pfam PF00563 EAL domain 353 585 5.5E-45 T 13-10-2018 IPR001633 EAL domain SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 SUPERFAMILY SSF141868 352 585 4.97E-53 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1230 8a9abf168ca2cdec0071761cc8e42a4b 590 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 174 331 1.1E-10 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0339 cae4ef41b62a1d186beee3829e99e00a 408 Gene3D G3DSA:2.30.40.10 18 404 3.1E-150 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 SJPD1_0339 cae4ef41b62a1d186beee3829e99e00a 408 Pfam PF01979 Amidohydrolase family 56 406 1.0E-37 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 SJPD1_0339 cae4ef41b62a1d186beee3829e99e00a 408 SUPERFAMILY SSF51556 59 359 5.72E-64 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_0339 cae4ef41b62a1d186beee3829e99e00a 408 SUPERFAMILY SSF51338 9 72 1.54E-9 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 SJPD1_0339 cae4ef41b62a1d186beee3829e99e00a 408 Gene3D G3DSA:3.20.20.140 61 362 3.1E-150 T 13-10-2018 SJPD1_0295 be534a9128dce68111530a142e6f7091 248 Pfam PF01925 Sulfite exporter TauE/SafE 10 240 1.0E-29 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 SUPERFAMILY SSF88697 10 113 1.39E-19 T 13-10-2018 IPR015947 PUA-like superfamily SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Gene3D G3DSA:1.10.8.60 502 595 7.5E-29 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Gene3D G3DSA:3.30.230.10 596 806 1.0E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Gene3D G3DSA:1.20.58.1480 122 246 1.6E-24 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 13 199 2.4E-19 T 13-10-2018 IPR003111 Lon, substrate-binding domain SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 362 500 1.6E-22 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 SMART SM00464 12 203 9.7E-33 T 13-10-2018 IPR003111 Lon, substrate-binding domain SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 759 777 6.1E-50 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 366 385 6.1E-50 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 706 725 6.1E-50 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 606 622 6.1E-50 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 736 755 6.1E-50 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 687 806 2.8E-52 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 581 665 5.8E-26 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 PIRSF PIRSF001174 1 807 5.7E-299 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 TIGRFAM TIGR00763 lon: endopeptidase La 15 805 6.8E-272 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 709 717 - T 13-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 SUPERFAMILY SSF54211 606 804 2.66E-48 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 SUPERFAMILY SSF52540 315 589 1.91E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Gene3D G3DSA:3.40.50.300 317 500 8.2E-60 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Gene3D G3DSA:2.30.130.40 7 118 5.6E-17 T 13-10-2018 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 Hamap MF_01973 Lon protease [lon]. 13 806 60.585 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 SJPD1_1151 2500b2116b49f92aa968eb07ca835425 807 SMART SM00382 358 506 5.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 Pfam PF00579 tRNA synthetases class I (W and Y) 1 254 3.6E-52 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 Gene3D G3DSA:1.10.240.10 184 287 6.2E-105 T 13-10-2018 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 18 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 138 159 4.6E-24 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 189 199 4.6E-24 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 63 82 4.6E-24 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 13 29 4.6E-24 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 Gene3D G3DSA:3.40.50.620 2 319 6.2E-105 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 319 7.1E-82 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 SJPD1_2212 f49d89f16dceaae536839a1bc6f789f6 321 SUPERFAMILY SSF52374 2 319 3.1E-76 T 13-10-2018 SJPD1_2487 3d791403110698d4f0592985e203f2c0 157 SMART SM00986 6 156 1.4E-4 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_2487 3d791403110698d4f0592985e203f2c0 157 SMART SM00987 6 156 1.4E-4 T 13-10-2018 SJPD1_2487 3d791403110698d4f0592985e203f2c0 157 Pfam PF03167 Uracil DNA glycosylase superfamily 10 153 1.3E-13 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_2487 3d791403110698d4f0592985e203f2c0 157 Gene3D G3DSA:3.40.470.10 1 157 3.8E-57 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_2487 3d791403110698d4f0592985e203f2c0 157 TIGRFAM TIGR04274 hypoxanDNAglyco: DNA-deoxyinosine glycosylase 4 152 4.0E-42 T 13-10-2018 IPR026353 Hypoxanthine-DNA glycosylase SJPD1_2487 3d791403110698d4f0592985e203f2c0 157 SUPERFAMILY SSF52141 5 155 4.05E-30 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0846 f34538821c5e914d7efb398a7a503338 510 Gene3D G3DSA:1.20.140.10 321 462 9.0E-197 T 13-10-2018 SJPD1_0846 f34538821c5e914d7efb398a7a503338 510 Gene3D G3DSA:1.10.1130.10 50 480 9.0E-197 T 13-10-2018 SJPD1_0846 f34538821c5e914d7efb398a7a503338 510 Pfam PF02335 Cytochrome c552 50 483 2.8E-173 T 13-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 SJPD1_0846 f34538821c5e914d7efb398a7a503338 510 Hamap MF_01182 Cytochrome c-552 [nrfA]. 2 488 53.44 T 13-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 SJPD1_0846 f34538821c5e914d7efb398a7a503338 510 SUPERFAMILY SSF48695 48 489 1.27E-155 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_0846 f34538821c5e914d7efb398a7a503338 510 PIRSF PIRSF000243 1 491 1.3E-167 T 13-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 Pfam PF13533 Biotin-lipoyl like 86 132 6.7E-13 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 Pfam PF13437 HlyD family secretion protein 195 298 8.9E-6 T 13-10-2018 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 Gene3D G3DSA:2.40.50.100 84 228 1.1E-63 T 13-10-2018 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 60 387 9.6E-73 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 Gene3D G3DSA:2.40.420.20 298 389 8.0E-21 T 13-10-2018 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 Gene3D G3DSA:2.40.30.170 78 297 1.1E-63 T 13-10-2018 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 SUPERFAMILY SSF111369 77 311 6.15E-53 T 13-10-2018 SJPD1_2700 717dc6b6348b9a0836e892b189dac0ba 407 Gene3D G3DSA:1.10.287.470 119 192 1.1E-63 T 13-10-2018 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 41.731 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 SUPERFAMILY SSF51658 1 279 4.19E-93 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 Pfam PF01261 Xylose isomerase-like TIM barrel 21 238 2.4E-35 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 13-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 Gene3D G3DSA:3.20.20.150 1 279 3.7E-105 T 13-10-2018 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 SMART SM00518 3 279 1.4E-116 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 SJPD1_0166 e1c5b2191db2be436a7e08a34a0c03fe 280 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 3.1E-103 T 13-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 SJPD1_2486 5f310f154e5624fab9a1f95a1f2416f8 518 Pfam PF08019 Domain of unknown function (DUF1705) 58 205 1.2E-36 T 13-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 SJPD1_2486 5f310f154e5624fab9a1f95a1f2416f8 518 SUPERFAMILY SSF53649 227 510 2.76E-18 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 SJPD1_2486 5f310f154e5624fab9a1f95a1f2416f8 518 Gene3D G3DSA:3.40.720.10 212 518 2.2E-87 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 SJPD1_2486 5f310f154e5624fab9a1f95a1f2416f8 518 Pfam PF00884 Sulfatase 230 503 5.5E-44 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 SJPD1_0288 db47853b876244faf30f685570c81d34 294 SUPERFAMILY SSF54211 130 273 3.34E-49 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0288 db47853b876244faf30f685570c81d34 294 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 3 270 2.0E-101 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 SJPD1_0288 db47853b876244faf30f685570c81d34 294 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 290 3.6E-113 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 SJPD1_0288 db47853b876244faf30f685570c81d34 294 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 1 274 43.482 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 SJPD1_0288 db47853b876244faf30f685570c81d34 294 SUPERFAMILY SSF54211 2 120 4.63E-37 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0288 db47853b876244faf30f685570c81d34 294 Gene3D G3DSA:3.30.1700.10 125 293 2.3E-61 T 13-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 SJPD1_0288 db47853b876244faf30f685570c81d34 294 Gene3D G3DSA:3.30.230.20 1 124 3.1E-39 T 13-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 SJPD1_1130 fb9f5fd74cd5ff4535a635a0f55ba273 185 SUPERFAMILY SSF53271 11 168 4.73E-42 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_1130 fb9f5fd74cd5ff4535a635a0f55ba273 185 Pfam PF00156 Phosphoribosyl transferase domain 48 161 5.4E-14 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 SJPD1_1130 fb9f5fd74cd5ff4535a635a0f55ba273 185 Gene3D G3DSA:3.40.50.2020 3 184 8.3E-57 T 13-10-2018 SJPD1_1130 fb9f5fd74cd5ff4535a635a0f55ba273 185 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 12 184 33.058 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 SJPD1_1130 fb9f5fd74cd5ff4535a635a0f55ba273 185 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 13 183 3.6E-63 T 13-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 Gene3D G3DSA:3.20.20.140 1 333 1.2E-90 T 13-10-2018 SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 PIRSF PIRSF001237 1 334 6.1E-116 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 Hamap MF_00219 Dihydroorotase [pyrC]. 1 332 42.899 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 SUPERFAMILY SSF51556 3 331 1.26E-102 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 ProSitePatterns PS00483 Dihydroorotase signature 2. 238 249 - T 13-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 331 3.9E-114 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0154 b8e4a7adaca2536b8bbaf97555e02428 335 Pfam PF01979 Amidohydrolase family 10 282 5.1E-5 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 SJPD1_1296 6fb236a641777409fd074c66be92d671 380 SMART SM00283 114 379 2.0E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1296 6fb236a641777409fd074c66be92d671 380 SUPERFAMILY SSF58104 75 380 6.28E-51 T 13-10-2018 SJPD1_1296 6fb236a641777409fd074c66be92d671 380 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 216 243 4.0E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1296 6fb236a641777409fd074c66be92d671 380 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 245 274 4.0E-19 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1296 6fb236a641777409fd074c66be92d671 380 Gene3D G3DSA:1.10.287.950 55 380 2.6E-50 T 13-10-2018 SJPD1_1296 6fb236a641777409fd074c66be92d671 380 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 195 345 1.7E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 2 288 1.0E-99 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 SUPERFAMILY SSF53671 2 289 3.54E-94 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 Gene3D G3DSA:3.40.50.1370 6 284 2.8E-94 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 43 50 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 290 39.616 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00101 Aspartate carbamoyltransferase signature 71 80 1.2E-31 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00101 Aspartate carbamoyltransferase signature 245 250 1.2E-31 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00101 Aspartate carbamoyltransferase signature 126 143 1.2E-31 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00101 Aspartate carbamoyltransferase signature 206 215 1.2E-31 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00101 Aspartate carbamoyltransferase signature 269 283 1.2E-31 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00101 Aspartate carbamoyltransferase signature 33 55 1.2E-31 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 Gene3D G3DSA:3.40.50.1370 127 267 2.8E-94 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 241 250 2.0E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 43 62 2.0E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 127 138 2.0E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 253 276 2.0E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 3 139 5.8E-45 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 SJPD1_2026 7b7f4aaab4649ed1672e81b25b222351 290 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 147 285 1.3E-24 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Pfam PF14824 Sirohaem biosynthesis protein central 112 138 7.1E-8 T 13-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 SUPERFAMILY SSF53790 171 406 9.42E-50 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 7 164 1.1E-25 T 13-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Gene3D G3DSA:3.40.1010.10 173 289 7.4E-30 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 254 287 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Gene3D G3DSA:3.40.50.720 2 104 2.6E-12 T 13-10-2018 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Pfam PF13241 Putative NAD(P)-binding 6 108 6.5E-14 T 13-10-2018 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 SUPERFAMILY SSF75615 101 157 2.22E-13 T 13-10-2018 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 SUPERFAMILY SSF51735 6 106 4.7E-9 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Gene3D G3DSA:3.30.160.110 107 141 8.4E-9 T 13-10-2018 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 175 386 4.6E-27 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 174 407 2.4E-57 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 Gene3D G3DSA:3.30.950.10 290 421 1.0E-18 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 PIRSF PIRSF036426 1 171 4.9E-33 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_2764 86256af1343a820cbdc7b18022fd66db 422 PIRSF PIRSF036426 157 420 4.8E-75 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 296 37.831 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 Gene3D G3DSA:3.40.190.10 101 202 3.4E-79 T 13-10-2018 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 SUPERFAMILY SSF54782 219 304 6.28E-22 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 Gene3D G3DSA:3.40.190.10 5 206 3.4E-79 T 13-10-2018 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 230 246 - T 13-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 PIRSF PIRSF001438 1 310 3.9E-111 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 Gene3D G3DSA:3.30.160.40 221 304 2.7E-21 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 208 4.5E-74 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.3E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.3E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 PRINTS PR00151 Porphobilinogen deaminase signature 229 246 1.3E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.3E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.3E-45 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 SUPERFAMILY SSF53850 2 209 3.04E-76 T 13-10-2018 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 294 3.2E-14 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1683 523a0a99f1f31cf3b2f921a29684177a 314 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 296 7.9E-103 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 SUPERFAMILY SSF50621 424 543 2.01E-13 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 Gene3D G3DSA:1.20.58.930 343 434 4.7E-193 T 13-10-2018 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PIRSF PIRSF001336 1 607 6.2E-211 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 Gene3D G3DSA:3.20.20.10 51 328 4.7E-193 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 TIGRFAM TIGR01273 speA: arginine decarboxylase 2 605 1.9E-212 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 SUPERFAMILY SSF51419 50 328 3.36E-56 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 Gene3D G3DSA:2.40.37.10 3 541 4.7E-193 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 60 326 2.6E-36 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 106 118 4.2E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 82 100 4.2E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 223 236 4.2E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 515 528 4.2E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 316 335 4.2E-17 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 82 100 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 306 323 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 129 144 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 50 65 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 74 88 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 515 536 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 466 491 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 180 202 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1625 13509876b7fca67058e45dd3459b2eba 614 PRINTS PR01180 Arginine decarboxylase signature 441 462 2.3E-41 T 13-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 SJPD1_1529 4cb447967cf9b88e39cb3ea69c3f5cc7 341 SUPERFAMILY SSF81345 9 332 2.35E-75 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_1529 4cb447967cf9b88e39cb3ea69c3f5cc7 341 Gene3D G3DSA:1.10.3470.10 10 340 1.3E-97 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_1529 4cb447967cf9b88e39cb3ea69c3f5cc7 341 Pfam PF01032 FecCD transport family 27 333 5.4E-89 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 SJPD1_1696 0bdda67585e369c9fee35831b7bf5b67 176 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 9.0E-40 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1696 0bdda67585e369c9fee35831b7bf5b67 176 SUPERFAMILY SSF53218 3 164 6.41E-46 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_1696 0bdda67585e369c9fee35831b7bf5b67 176 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 SJPD1_1696 0bdda67585e369c9fee35831b7bf5b67 176 Pfam PF00994 Probable molybdopterin binding domain 7 150 1.2E-31 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1696 0bdda67585e369c9fee35831b7bf5b67 176 Gene3D G3DSA:3.40.980.10 1 176 6.0E-64 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_1696 0bdda67585e369c9fee35831b7bf5b67 176 SMART SM00852 7 153 2.8E-28 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1333 b82d76cde519bb0618e1c673140ab04f 364 SUPERFAMILY SSF58104 57 268 1.57E-49 T 13-10-2018 SJPD1_1333 b82d76cde519bb0618e1c673140ab04f 364 Gene3D G3DSA:1.10.287.950 3 260 1.5E-49 T 13-10-2018 SJPD1_1333 b82d76cde519bb0618e1c673140ab04f 364 Pfam PF13682 Chemoreceptor zinc-binding domain 259 322 8.7E-10 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain SJPD1_1333 b82d76cde519bb0618e1c673140ab04f 364 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 124 249 1.1E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1333 b82d76cde519bb0618e1c673140ab04f 364 SMART SM00283 56 263 1.3E-18 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 SUPERFAMILY SSF55174 4 57 1.08E-13 T 13-10-2018 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 Gene3D G3DSA:3.10.290.10 2 64 1.0E-17 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 SUPERFAMILY SSF55120 64 255 2.77E-28 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 Gene3D G3DSA:3.30.70.580 66 236 4.0E-36 T 13-10-2018 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 69 238 4.6E-38 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 Pfam PF01479 S4 domain 4 47 3.7E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 Pfam PF00849 RNA pseudouridylate synthase 65 207 1.4E-11 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 Gene3D G3DSA:3.30.70.1560 126 228 4.0E-36 T 13-10-2018 SJPD1_0098 862134e3007b7f0e2253ccf7dd5a937b 272 SMART SM00363 4 72 4.6E-11 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 SUPERFAMILY SSF51735 1 178 1.48E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 SUPERFAMILY SSF55347 151 315 2.95E-67 T 13-10-2018 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 Gene3D G3DSA:3.30.360.10 150 316 6.2E-135 T 13-10-2018 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 145 163 3.9E-34 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 3.9E-34 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 3.9E-34 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 3.9E-34 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 172 188 3.9E-34 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 SMART SM00846 3 151 4.9E-66 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 326 7.7E-128 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 156 314 6.9E-65 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 103 3.4E-31 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 PIRSF PIRSF000149 1 333 4.5E-127 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 Gene3D G3DSA:3.40.50.720 4 327 6.2E-135 T 13-10-2018 SJPD1_0531 dda2c931bbd559d8c097cb0ae2ec6331 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 149 156 - T 13-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Pfam PF00512 His Kinase A (phospho-acceptor) domain 388 451 1.3E-20 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 SMART SM00448 770 886 2.3E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 SUPERFAMILY SSF55874 441 614 4.19E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Gene3D G3DSA:3.40.50.12330 764 826 2.5E-21 T 13-10-2018 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Gene3D G3DSA:3.30.565.10 453 619 1.1E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 SMART SM00388 387 452 1.8E-26 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 SUPERFAMILY SSF52172 770 887 3.98E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Gene3D G3DSA:1.10.287.130 363 450 2.6E-28 T 13-10-2018 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Pfam PF08376 Nitrate and nitrite sensing 54 280 4.5E-21 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 SMART SM00387 499 617 9.5E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 614 4.4E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 PRINTS PR00344 Bacterial sensor protein C-terminal signature 577 595 4.4E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 PRINTS PR00344 Bacterial sensor protein C-terminal signature 560 570 4.4E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 556 4.4E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 SUPERFAMILY SSF47384 375 453 1.35E-21 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Gene3D G3DSA:3.40.50.2300 827 894 1.8E-18 T 13-10-2018 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Pfam PF00072 Response regulator receiver domain 772 886 1.8E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0704 1446b79538bf8304931bf69edf459509 1075 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 615 4.9E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0369 931cd9ac64099043331f33518eb77567 340 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 5 338 45.478 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 SJPD1_0369 931cd9ac64099043331f33518eb77567 340 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 136 152 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 SJPD1_0369 931cd9ac64099043331f33518eb77567 340 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 3 335 2.3E-113 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 SJPD1_0369 931cd9ac64099043331f33518eb77567 340 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 3 335 1.6E-127 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 SJPD1_0369 931cd9ac64099043331f33518eb77567 340 Gene3D G3DSA:3.20.20.210 1 339 1.5E-125 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 SJPD1_0369 931cd9ac64099043331f33518eb77567 340 SUPERFAMILY SSF51726 3 335 3.66E-104 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 SJPD1_0369 931cd9ac64099043331f33518eb77567 340 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 16 25 - T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 Gene3D G3DSA:1.10.287.470 102 175 9.5E-84 T 13-10-2018 SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 Gene3D G3DSA:2.40.420.20 305 372 9.5E-84 T 13-10-2018 SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 55 374 4.6E-72 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 Gene3D G3DSA:2.40.50.100 67 209 9.5E-84 T 13-10-2018 SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 294 1.2E-12 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 SUPERFAMILY SSF111369 57 298 1.09E-51 T 13-10-2018 SJPD1_0776 8d3abcaaf4f1d58aeaacc08fede3e059 383 Gene3D G3DSA:2.40.30.170 57 304 9.5E-84 T 13-10-2018 SJPD1_2037 a5ce865f80ed402ccb9bd1d21eb0eef9 76 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 76 20.328 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2037 a5ce865f80ed402ccb9bd1d21eb0eef9 76 SUPERFAMILY SSF54565 3 74 3.79E-27 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2037 a5ce865f80ed402ccb9bd1d21eb0eef9 76 TIGRFAM TIGR00002 S16: ribosomal protein bS16 5 73 4.9E-27 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2037 a5ce865f80ed402ccb9bd1d21eb0eef9 76 Gene3D G3DSA:3.30.1320.10 1 76 1.3E-28 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2037 a5ce865f80ed402ccb9bd1d21eb0eef9 76 Pfam PF00886 Ribosomal protein S16 9 67 1.8E-23 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2037 a5ce865f80ed402ccb9bd1d21eb0eef9 76 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 13-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2467 e882d8c20f462decc98faea9b0e60305 214 Gene3D G3DSA:3.40.50.300 2 207 4.8E-58 T 13-10-2018 SJPD1_2467 e882d8c20f462decc98faea9b0e60305 214 SUPERFAMILY SSF52540 7 210 1.31E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2467 e882d8c20f462decc98faea9b0e60305 214 Pfam PF13189 Cytidylate kinase-like family 8 190 1.0E-51 T 13-10-2018 SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 SUPERFAMILY SSF52540 74 361 1.43E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 Pfam PF00270 DEAD/DEAH box helicase 25 196 2.1E-49 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 SMART SM00490 259 340 7.1E-32 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 Gene3D G3DSA:3.40.50.300 1 211 4.2E-71 T 13-10-2018 SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 Pfam PF00271 Helicase conserved C-terminal domain 236 340 6.3E-27 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 SMART SM00487 20 223 2.8E-56 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SJPD1_0567 d93c2b73f34f53afc0be9ae3ad1023b6 413 Gene3D G3DSA:3.40.50.300 215 410 3.2E-48 T 13-10-2018 SJPD1_2613 b25b5cc5b184f528c550af790ceb0da2 704 SUPERFAMILY SSF82866 553 697 9.42E-11 T 13-10-2018 SJPD1_2613 b25b5cc5b184f528c550af790ceb0da2 704 SUPERFAMILY SSF82866 183 359 4.71E-11 T 13-10-2018 SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 28 37 - T 13-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 245 6.0E-21 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 252 2.6E-83 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 SUPERFAMILY SSF56219 1 254 5.63E-72 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 Gene3D G3DSA:3.60.10.10 1 253 6.5E-84 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 252 3.6E-79 T 13-10-2018 SJPD1_1899 c33d333f536c427e87c49a9f9942fa7f 254 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 187 203 - T 13-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 Gene3D G3DSA:3.40.50.1260 7 393 2.4E-153 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 14 24 - T 13-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PIRSF PIRSF000724 1 399 3.9E-147 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 Pfam PF00162 Phosphoglycerate kinase 5 385 1.4E-152 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 9 25 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 315 340 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 371 388 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 348 359 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 170 192 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 PRINTS PR00477 Phosphoglycerate kinase family signature 193 212 1.7E-86 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 Gene3D G3DSA:3.40.50.1260 172 385 2.4E-153 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 7 395 39.58 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0532 956e39dc7e47913e5d9916e04e23204e 399 SUPERFAMILY SSF53748 3 395 1.06E-145 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 39 56 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 120 137 - T 13-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PIRSF PIRSF000097 1 115 8.6E-37 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PIRSF PIRSF000097 111 275 1.7E-42 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PRINTS PR00069 Aldo-keto reductase signature 154 183 2.1E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PRINTS PR00069 Aldo-keto reductase signature 91 109 2.1E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PRINTS PR00069 Aldo-keto reductase signature 35 59 2.1E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PRINTS PR00069 Aldo-keto reductase signature 193 217 2.1E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 PRINTS PR00069 Aldo-keto reductase signature 120 137 2.1E-43 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 SUPERFAMILY SSF51430 3 264 1.44E-86 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 Gene3D G3DSA:3.20.20.100 1 281 4.6E-113 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2089 7ea2e9dbbe961c0c17a3114f06acef3d 281 Pfam PF00248 Aldo/keto reductase family 17 257 5.1E-48 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 SUPERFAMILY SSF55826 218 370 3.14E-20 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 SUPERFAMILY SSF55681 10 472 6.13E-93 T 13-10-2018 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 455 6.2E-51 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Pfam PF03129 Anticodon binding domain 476 564 5.0E-17 T 13-10-2018 IPR004154 Anticodon-binding SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Gene3D G3DSA:3.30.930.10 11 463 3.3E-226 T 13-10-2018 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Pfam PF04073 Aminoacyl-tRNA editing domain 257 370 9.5E-20 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 4.6E-16 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 4.6E-16 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 4.6E-16 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 4.6E-16 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Gene3D G3DSA:3.90.960.10 240 387 3.3E-226 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 559 1.2E-218 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Gene3D G3DSA:3.40.50.800 4 550 3.3E-226 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 567 37.226 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 SJPD1_1686 c86c1b652a9cfe53ecc995db952cb0f7 567 SUPERFAMILY SSF52954 461 566 1.66E-25 T 13-10-2018 SJPD1_0551 565ce49bc953dbde1c25ab9aab777157 164 Gene3D G3DSA:3.40.50.1170 1 160 8.5E-25 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 SJPD1_0551 565ce49bc953dbde1c25ab9aab777157 164 Pfam PF00710 Asparaginase, N-terminal 3 149 6.5E-23 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 SJPD1_0551 565ce49bc953dbde1c25ab9aab777157 164 PRINTS PR00139 Asparaginase/glutaminase family signature 4 15 1.2E-6 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_0551 565ce49bc953dbde1c25ab9aab777157 164 PRINTS PR00139 Asparaginase/glutaminase family signature 76 94 1.2E-6 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_0551 565ce49bc953dbde1c25ab9aab777157 164 SUPERFAMILY SSF53774 1 157 9.68E-29 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 Pfam PF00271 Helicase conserved C-terminal domain 383 474 2.4E-4 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 Pfam PF00270 DEAD/DEAH box helicase 134 246 2.1E-8 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 Gene3D G3DSA:3.40.50.300 110 266 3.3E-13 T 13-10-2018 SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 Gene3D G3DSA:3.40.50.300 331 485 2.6E-16 T 13-10-2018 SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 SMART SM00487 117 305 0.0038 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 SUPERFAMILY SSF52540 136 474 8.04E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0973 c57c523e9f1051b47f320369f6f0517c 818 SMART SM00490 382 475 6.5E-5 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PIRSF PIRSF000722 1 402 1.0E-155 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 Gene3D G3DSA:3.30.420.40 199 403 1.8E-84 T 13-10-2018 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 Hamap MF_00020 Acetate kinase [ackA]. 1 401 176.69 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 SUPERFAMILY SSF53067 160 398 5.38E-90 T 13-10-2018 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 13-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 SUPERFAMILY SSF53067 2 198 4.79E-65 T 13-10-2018 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 Gene3D G3DSA:3.30.420.40 1 198 6.4E-69 T 13-10-2018 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 TIGRFAM TIGR00016 ackA: acetate kinase 2 398 1.4E-153 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 Pfam PF00871 Acetokinase family 2 391 6.2E-154 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PRINTS PR00471 Acetate kinase family signature 176 189 5.2E-46 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PRINTS PR00471 Acetate kinase family signature 3 14 5.2E-46 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PRINTS PR00471 Acetate kinase family signature 324 340 5.2E-46 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PRINTS PR00471 Acetate kinase family signature 206 227 5.2E-46 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PRINTS PR00471 Acetate kinase family signature 379 391 5.2E-46 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_1461 780b11054c73d705fff85d59bb04f307 403 PRINTS PR00471 Acetate kinase family signature 302 315 5.2E-46 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 Gene3D G3DSA:3.20.20.10 23 250 2.2E-155 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 SUPERFAMILY SSF50621 218 368 6.7E-32 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 Gene3D G3DSA:2.40.37.10 14 377 2.2E-155 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 PIRSF PIRSF038941 4 381 1.1E-173 T 13-10-2018 IPR005730 Carboxynorspermidine decarboxylase GO:0016831|GO:0045312 KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 SUPERFAMILY SSF51419 23 253 3.49E-42 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 139 338 6.6E-11 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 SJPD1_2648 3b471c76c06eca14f75f4050c240724f 381 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 14 381 1.7E-165 T 13-10-2018 IPR005730 Carboxynorspermidine decarboxylase GO:0016831|GO:0045312 KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 PIRSF PIRSF004749 1 175 5.8E-52 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 PRINTS PR01576 Peptide deformylase signature 130 159 1.4E-28 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 PRINTS PR01576 Peptide deformylase signature 35 64 1.4E-28 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 PRINTS PR01576 Peptide deformylase signature 111 129 1.4E-28 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 PRINTS PR01576 Peptide deformylase signature 99 110 1.4E-28 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 SUPERFAMILY SSF56420 4 172 6.93E-55 T 13-10-2018 IPR036821 Peptide deformylase superfamily SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 Pfam PF01327 Polypeptide deformylase 5 160 1.3E-52 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 169 1.5E-39 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 Gene3D G3DSA:3.90.45.10 1 174 2.3E-59 T 13-10-2018 IPR036821 Peptide deformylase superfamily SJPD1_1219 2ae680cbffccb14a38def50ebea1c0f2 175 Hamap MF_00163 Peptide deformylase [def]. 3 172 26.233 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 174 6.2E-47 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 Gene3D G3DSA:3.40.50.1220 206 363 6.5E-106 T 13-10-2018 SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 Gene3D G3DSA:3.40.50.970 1 179 3.4E-61 T 13-10-2018 SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 538 2.5E-38 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 SUPERFAMILY SSF52518 372 561 1.59E-46 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 336 1.9E-35 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 SUPERFAMILY SSF52518 1 175 2.18E-45 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 Gene3D G3DSA:3.40.50.970 364 540 6.5E-106 T 13-10-2018 SJPD1_2233 1972ee220b7b432e48cb766863e6e9f7 582 SUPERFAMILY SSF52467 159 360 1.06E-41 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 SUPERFAMILY SSF51905 1 307 1.94E-44 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 4.3E-30 T 13-10-2018 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 4.3E-30 T 13-10-2018 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 4.3E-30 T 13-10-2018 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 4.3E-30 T 13-10-2018 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 146 164 4.3E-30 T 13-10-2018 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 Gene3D G3DSA:3.50.50.60 116 238 2.6E-113 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 37 52 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 105 113 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 194 210 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 166 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 3 25 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 271 289 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 232 253 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 127 139 2.2E-55 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 Gene3D G3DSA:3.50.50.60 3 303 2.6E-113 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 296 1.4E-47 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SJPD1_0205 83a1cc7fe0f06822443149735ae425f8 310 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 3 307 1.6E-103 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 SJPD1_2325 f417448372c92747da55d38fb31000d5 571 SMART SM00563 82 199 1.2E-10 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 SJPD1_2325 f417448372c92747da55d38fb31000d5 571 SUPERFAMILY SSF69593 47 215 1.57E-15 T 13-10-2018 SJPD1_2325 f417448372c92747da55d38fb31000d5 571 SUPERFAMILY SSF55729 307 447 2.17E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2325 f417448372c92747da55d38fb31000d5 571 Pfam PF01553 Acyltransferase 72 196 5.7E-13 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 SJPD1_2325 f417448372c92747da55d38fb31000d5 571 Pfam PF13444 Acetyltransferase (GNAT) domain 325 426 6.2E-24 T 13-10-2018 SJPD1_1852 49033a1d39232c70439417bdfd04554a 243 Gene3D G3DSA:3.40.50.150 2 237 2.1E-37 T 13-10-2018 SJPD1_1852 49033a1d39232c70439417bdfd04554a 243 Pfam PF08241 Methyltransferase domain 42 134 1.1E-18 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 SJPD1_1852 49033a1d39232c70439417bdfd04554a 243 SUPERFAMILY SSF53335 14 238 4.58E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1895 e3f8ffe5c4dc2d00f1daff922da0f6eb 210 PIRSF PIRSF006324 1 209 3.0E-58 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1895 e3f8ffe5c4dc2d00f1daff922da0f6eb 210 Pfam PF01810 LysE type translocator 15 205 4.6E-32 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1492 816c718afd060746260929a6698d9a06 628 Gene3D G3DSA:3.30.450.20 62 171 4.8E-16 T 13-10-2018 SJPD1_1492 816c718afd060746260929a6698d9a06 628 Gene3D G3DSA:3.30.450.20 49 271 4.8E-16 T 13-10-2018 SJPD1_1492 816c718afd060746260929a6698d9a06 628 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 443 540 8.2E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1492 816c718afd060746260929a6698d9a06 628 SMART SM00304 297 351 3.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1492 816c718afd060746260929a6698d9a06 628 SMART SM00283 352 627 1.3E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1492 816c718afd060746260929a6698d9a06 628 Gene3D G3DSA:1.10.287.950 299 628 4.2E-59 T 13-10-2018 SJPD1_1492 816c718afd060746260929a6698d9a06 628 Pfam PF02743 Cache domain 48 259 7.0E-16 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_1492 816c718afd060746260929a6698d9a06 628 SUPERFAMILY SSF58104 319 628 5.49E-53 T 13-10-2018 SJPD1_0663 528744e8adf6762163e75cd3068c1d76 338 SUPERFAMILY SSF54862 184 249 1.17E-9 T 13-10-2018 SJPD1_0663 528744e8adf6762163e75cd3068c1d76 338 Pfam PF13484 4Fe-4S double cluster binding domain 183 246 4.2E-12 T 13-10-2018 SJPD1_2773 41dcb40eaf851811591928364b54db33 135 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 122 6.0E-17 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I SJPD1_2773 41dcb40eaf851811591928364b54db33 135 SMART SM00226 2 130 5.0E-26 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I SJPD1_2773 41dcb40eaf851811591928364b54db33 135 Gene3D G3DSA:3.40.50.2300 1 127 4.0E-34 T 13-10-2018 SJPD1_2773 41dcb40eaf851811591928364b54db33 135 SUPERFAMILY SSF52788 1 128 2.62E-33 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 SUPERFAMILY SSF55008 4 69 1.31E-16 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Pfam PF00702 haloacid dehalogenase-like hydrolase 412 625 1.0E-43 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00943 Copper-transporting ATPase signature 20 34 1.6E-11 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00943 Copper-transporting ATPase signature 139 158 1.6E-11 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00943 Copper-transporting ATPase signature 339 353 1.6E-11 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00943 Copper-transporting ATPase signature 399 414 1.6E-11 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00943 Copper-transporting ATPase signature 588 605 1.6E-11 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00943 Copper-transporting ATPase signature 48 68 1.6E-11 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 190 690 7.6E-97 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 ProSitePatterns PS01047 Heavy-metal-associated domain. 10 38 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Gene3D G3DSA:3.40.1110.10 427 543 5.1E-85 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Gene3D G3DSA:3.40.50.1000 397 663 5.1E-85 T 13-10-2018 IPR023214 HAD superfamily SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 154 713 7.9E-186 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 SUPERFAMILY SSF81665 182 690 5.36E-18 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 SUPERFAMILY SSF56784 415 711 2.19E-57 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 136 714 3.9E-176 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 418 424 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Pfam PF00403 Heavy-metal-associated domain 8 66 5.0E-13 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Pfam PF00122 E1-E2 ATPase 217 395 7.1E-58 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Gene3D G3DSA:3.30.70.100 3 89 2.4E-17 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 SUPERFAMILY SSF81653 219 316 8.89E-28 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 Gene3D G3DSA:2.70.150.20 210 321 9.6E-39 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 416 430 3.8E-27 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 536 547 3.8E-27 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 634 646 3.8E-27 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 266 280 3.8E-27 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 558 568 3.8E-27 T 13-10-2018 SJPD1_1789 72bd170661cbacde55da554578c2ddb8 719 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 611 630 3.8E-27 T 13-10-2018 SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 SUPERFAMILY SSF46548 8 91 4.08E-15 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 PIRSF PIRSF000139 1 420 1.6E-117 T 13-10-2018 SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 62 73 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 Pfam PF02754 Cysteine-rich domain 174 259 2.2E-13 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 Pfam PF02754 Cysteine-rich domain 310 393 2.8E-10 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 Pfam PF13534 4Fe-4S dicluster domain 10 77 8.7E-9 T 13-10-2018 SJPD1_0497 94f40d357152e8a2b24428b167420ad2 420 Gene3D G3DSA:1.10.1060.10 3 93 5.3E-7 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 PIRSF PIRSF000854 1 793 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 16 345 3.0E-114 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Gene3D G3DSA:3.30.470.20 194 354 1.4E-52 T 13-10-2018 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 4 789 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 474 788 2.0E-61 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Gene3D G3DSA:3.30.1490.20 1 193 1.2E-70 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 SUPERFAMILY SSF51621 460 790 2.43E-92 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 2.2E-24 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 SUPERFAMILY SSF52009 355 465 1.31E-29 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 747 759 2.1E-5 T 13-10-2018 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 694 709 2.1E-5 T 13-10-2018 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 711 726 2.1E-5 T 13-10-2018 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 SUPERFAMILY SSF56059 1 380 1.88E-99 T 13-10-2018 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Gene3D G3DSA:3.20.20.60 477 788 1.1E-96 T 13-10-2018 SJPD1_1573 38844436cd5ce936eac963adbb098689 793 Gene3D G3DSA:3.50.30.10 358 476 5.1E-37 T 13-10-2018 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 Pfam PF07650 KH domain 206 281 8.1E-16 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 TIGRFAM TIGR00436 era: GTP-binding protein Era 8 275 2.3E-67 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 Gene3D G3DSA:3.30.300.20 184 295 1.2E-33 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 Pfam PF01926 50S ribosome-binding GTPase 10 122 2.5E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 157 2.6E-19 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 SUPERFAMILY SSF54814 180 293 2.55E-33 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 Hamap MF_00367 GTPase Era [era]. 5 293 30.843 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 SUPERFAMILY SSF52540 10 211 2.02E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1473 ed23bec0aca34ba04f584719f0ab2300 296 Gene3D G3DSA:3.40.50.300 1 182 1.6E-35 T 13-10-2018 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 Pfam PF01960 ArgJ family 20 396 9.5E-123 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 13 396 7.2E-111 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 Gene3D G3DSA:3.60.70.12 9 266 1.8E-77 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 Gene3D G3DSA:3.10.20.340 267 396 6.4E-40 T 13-10-2018 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 SUPERFAMILY SSF56266 14 393 2.88E-114 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 25 396 1.0E-118 T 13-10-2018 SJPD1_1995 86823380589ba09fc4d6866cfa936a96 396 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 396 109.184 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82693 136 324 7.67E-23 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:3.30.70.1320 133 326 4.6E-293 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82866 290 488 3.01E-48 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82693 40 133 1.41E-22 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82866 817 1015 2.09E-44 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:1.20.1640.10 10 503 4.6E-293 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:3.30.70.1440 654 852 4.6E-293 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82693 556 653 1.23E-15 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:3.30.2090.10 179 269 4.6E-293 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:1.20.1640.10 504 1010 4.6E-293 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82693 667 841 4.97E-10 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 PRINTS PR00702 Acriflavin resistance protein family signature 610 624 7.7E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Pfam PF00873 AcrB/AcrD/AcrF family 4 1013 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:3.30.70.1430 558 653 4.6E-293 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82714 183 265 2.88E-14 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:3.30.70.1430 40 802 4.6E-293 T 13-10-2018 SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 SUPERFAMILY SSF82714 708 790 2.75E-18 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2701 1c7b1cdda98d5464791fcd0894363108 1027 Gene3D G3DSA:3.30.2090.10 706 794 4.6E-293 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 Pfam PF04542 Sigma-70 region 2 23 93 1.9E-9 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 Gene3D G3DSA:1.10.1740.10 6 93 9.6E-21 T 13-10-2018 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 Pfam PF04545 Sigma-70, region 4 187 230 1.6E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 Gene3D G3DSA:1.20.140.160 94 234 2.3E-26 T 13-10-2018 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 232 5.1E-29 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 202 228 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 SUPERFAMILY SSF88659 163 232 1.5E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 PRINTS PR00046 Major sigma-70 factor signature 94 107 3.3E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 PRINTS PR00046 Major sigma-70 factor signature 217 228 3.3E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 PRINTS PR00046 Major sigma-70 factor signature 202 217 3.3E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 PRINTS PR00046 Major sigma-70 factor signature 185 197 3.3E-6 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 SUPERFAMILY SSF88659 97 157 8.28E-7 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 SUPERFAMILY SSF88946 18 94 1.06E-15 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 SJPD1_0346 35ff1203716a72345db13fb63b99b32d 237 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 23 232 2.0E-59 T 13-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 Pfam PF00106 short chain dehydrogenase 6 195 3.4E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 SUPERFAMILY SSF51735 1 222 2.08E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.6E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 0.0078 T 13-10-2018 SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 Gene3D G3DSA:3.40.50.720 3 243 2.4E-53 T 13-10-2018 SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 8.7E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 8.7E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1344 3a17fb560d25944de3c4e3c40e282f16 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 8.7E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1392 cabb898fd2227eaab9af6460f2a40708 284 SUPERFAMILY SSF74650 28 278 1.32E-55 T 13-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 SJPD1_1392 cabb898fd2227eaab9af6460f2a40708 284 Gene3D G3DSA:2.70.98.10 9 281 3.6E-78 T 13-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 SJPD1_1392 cabb898fd2227eaab9af6460f2a40708 284 PIRSF PIRSF016020 6 275 2.1E-59 T 13-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 SJPD1_1392 cabb898fd2227eaab9af6460f2a40708 284 Pfam PF01263 Aldose 1-epimerase 28 268 8.5E-37 T 13-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 Gene3D G3DSA:3.50.50.60 7 426 4.5E-140 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 Gene3D G3DSA:3.90.700.10 277 389 4.5E-140 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 Gene3D G3DSA:1.10.472.70 560 652 1.3E-39 T 13-10-2018 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 Pfam PF00890 FAD binding domain 7 415 7.4E-120 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 SUPERFAMILY SSF56425 251 374 1.94E-35 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 601 2.8E-222 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 SUPERFAMILY SSF51905 5 441 1.38E-57 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 Gene3D G3DSA:1.20.58.100 442 559 1.1E-36 T 13-10-2018 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 SUPERFAMILY SSF46977 463 658 2.49E-58 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 Pfam PF02910 Fumarate reductase flavoprotein C-term 473 601 1.4E-37 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0506 c7c7a0d495de3c8c62c614596295220e 661 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 41 50 - T 13-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1482 184143f43a639ca17178038b8d85693e 240 SMART SM00382 28 212 8.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1482 184143f43a639ca17178038b8d85693e 240 Pfam PF00005 ABC transporter 20 165 1.7E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1482 184143f43a639ca17178038b8d85693e 240 SUPERFAMILY SSF52540 3 235 1.3E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1482 184143f43a639ca17178038b8d85693e 240 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 240 1.7E-103 T 13-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 SJPD1_1482 184143f43a639ca17178038b8d85693e 240 Gene3D G3DSA:3.40.50.300 2 240 7.0E-68 T 13-10-2018 SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 SUPERFAMILY SSF47384 192 263 7.65E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 Gene3D G3DSA:3.30.565.10 271 409 2.4E-15 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 319 398 7.8E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 Gene3D G3DSA:1.10.287.130 154 268 5.9E-16 T 13-10-2018 SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 Pfam PF00672 HAMP domain 158 203 9.9E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 SMART SM00304 155 207 2.1E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 SMART SM00387 311 413 1.9E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 SUPERFAMILY SSF55874 267 402 6.02E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0682 c2c84c06f91f2dec73a5d21183d90885 415 SUPERFAMILY SSF158472 158 206 2.22E-7 T 13-10-2018 SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 Pfam PF02569 Pantoate-beta-alanine ligase 3 271 9.1E-89 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 23 59 3.7E-7 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 Gene3D G3DSA:3.40.50.620 1 173 2.0E-63 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 273 4.6E-93 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 Gene3D G3DSA:3.30.1300.10 174 273 2.2E-24 T 13-10-2018 SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 SUPERFAMILY SSF52374 1 273 4.98E-92 T 13-10-2018 SJPD1_0546 637afc72abaad999d984e4fe9231d0b3 273 Hamap MF_00158 Pantothenate synthetase [panC]. 2 273 35.301 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Gene3D G3DSA:1.10.287.470 238 273 4.2E-12 T 13-10-2018 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 332 356 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 24 47 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 401 416 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 66 86 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 356 379 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 299 320 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 416 436 3.2E-50 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Gene3D G3DSA:1.10.287.470 88 105 5.7E-7 T 13-10-2018 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Gene3D G3DSA:2.40.50.100 274 319 4.2E-12 T 13-10-2018 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Gene3D G3DSA:2.40.30.170 42 53 5.7E-7 T 13-10-2018 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Gene3D G3DSA:2.40.30.170 320 384 4.2E-12 T 13-10-2018 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Pfam PF13437 HlyD family secretion protein 287 390 1.6E-15 T 13-10-2018 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 15 437 1.0E-98 T 13-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 SJPD1_2876 76eb755ca0e2b743c9e33163a998f927 437 Gene3D G3DSA:2.40.50.100 54 87 5.7E-7 T 13-10-2018 SJPD1_1317 59722d5e14f7ce97dc7a0c855234178e 69 SUPERFAMILY SSF159203 3 59 2.88E-14 T 13-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily SJPD1_1317 59722d5e14f7ce97dc7a0c855234178e 69 Gene3D G3DSA:2.40.50.240 2 67 3.0E-14 T 13-10-2018 IPR024044 NifT/FixU barrel-like domain superfamily SJPD1_1317 59722d5e14f7ce97dc7a0c855234178e 69 Pfam PF06988 NifT/FixU protein 1 59 3.6E-17 T 13-10-2018 IPR009727 NifT/FixU GO:0009399 SJPD1_1317 59722d5e14f7ce97dc7a0c855234178e 69 TIGRFAM TIGR02934 nifT_nitrog: probable nitrogen fixation protein FixT 2 67 3.5E-18 T 13-10-2018 IPR009727 NifT/FixU GO:0009399 SJPD1_1363 6e775455389faecaf6d8431432a3734a 125 Gene3D G3DSA:1.20.120.340 1 123 3.5E-33 T 13-10-2018 SJPD1_1363 6e775455389faecaf6d8431432a3734a 125 Pfam PF02561 Flagellar protein FliS 7 117 1.9E-30 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 SJPD1_1363 6e775455389faecaf6d8431432a3734a 125 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 119 1.0E-38 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 SJPD1_1363 6e775455389faecaf6d8431432a3734a 125 SUPERFAMILY SSF101116 6 118 3.92E-30 T 13-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 SJPD1_1363 6e775455389faecaf6d8431432a3734a 125 PIRSF PIRSF039090 1 124 7.7E-28 T 13-10-2018 IPR003713 Flagellar protein FliS GO:0044780 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:3.30.2090.10 721 809 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82693 565 671 3.66E-26 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:1.20.1640.10 9 512 0.0 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1030 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82693 673 857 3.49E-26 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 2.2E-97 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:1.20.1640.10 513 1023 0.0 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82866 298 501 3.01E-49 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:3.30.70.1440 669 866 0.0 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82714 722 807 3.01E-22 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82693 138 332 1.24E-26 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82693 39 133 1.54E-25 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82866 831 1026 1.96E-46 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:3.30.70.1430 567 668 0.0 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:3.30.70.1430 39 817 0.0 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 Gene3D G3DSA:3.30.70.1320 134 334 0.0 T 13-10-2018 SJPD1_1341 e76445de1e36821f390cea1e18b32bb0 1042 SUPERFAMILY SSF82714 184 273 3.92E-20 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 Pfam PF00375 Sodium:dicarboxylate symporter family 22 415 5.9E-85 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 SUPERFAMILY SSF118215 22 417 1.31E-91 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 Gene3D G3DSA:1.10.3860.10 9 434 3.5E-98 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 PRINTS PR00173 Glutamate-aspartate symporter signature 307 333 2.9E-16 T 13-10-2018 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 PRINTS PR00173 Glutamate-aspartate symporter signature 342 361 2.9E-16 T 13-10-2018 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 PRINTS PR00173 Glutamate-aspartate symporter signature 207 226 2.9E-16 T 13-10-2018 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 PRINTS PR00173 Glutamate-aspartate symporter signature 87 112 2.9E-16 T 13-10-2018 SJPD1_0674 7d4fbdbd29470fe42c661af43519b2f4 442 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 2.9E-16 T 13-10-2018 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 SUPERFAMILY SSF54826 4 135 1.35E-51 T 13-10-2018 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 Gene3D G3DSA:3.20.20.120 127 424 6.9E-129 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PRINTS PR00148 Enolase signature 37 51 6.1E-42 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PRINTS PR00148 Enolase signature 334 348 6.1E-42 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PRINTS PR00148 Enolase signature 363 380 6.1E-42 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PRINTS PR00148 Enolase signature 311 322 6.1E-42 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PRINTS PR00148 Enolase signature 106 122 6.1E-42 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PRINTS PR00148 Enolase signature 160 173 6.1E-42 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 420 8.2E-114 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 PIRSF PIRSF001400 1 423 1.4E-182 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 Pfam PF03952 Enolase, N-terminal domain 4 133 1.9E-54 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 SMART SM01193 4 133 4.2E-87 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 Gene3D G3DSA:3.30.390.10 3 126 3.3E-51 T 13-10-2018 IPR029017 Enolase-like, N-terminal SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 Hamap MF_00318 Enolase [eno]. 2 411 42.576 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 SUPERFAMILY SSF51604 137 412 1.98E-116 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 SMART SM01192 138 424 2.7E-196 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 423 8.9E-200 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2809 5d5097f5746804f844c53d2ccfdf4c2b 424 ProSitePatterns PS00164 Enolase signature. 334 347 - T 13-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 SUPERFAMILY SSF52540 1 215 1.75E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 SUPERFAMILY SSF75138 210 329 3.1E-23 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Gene3D G3DSA:3.40.50.10950 381 694 7.5E-140 T 13-10-2018 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Pfam PF01515 Phosphate acetyl/butaryl transferase 374 691 1.4E-129 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 PIRSF PIRSF006107 2 699 2.3E-186 T 13-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Gene3D G3DSA:3.40.1390.20 209 350 1.7E-25 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Gene3D G3DSA:3.40.50.10750 514 667 7.5E-140 T 13-10-2018 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Gene3D G3DSA:3.40.50.300 2 208 4.9E-8 T 13-10-2018 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 SUPERFAMILY SSF53659 374 694 3.17E-94 T 13-10-2018 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Pfam PF07085 DRTGG domain 214 328 5.7E-25 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 390 691 2.3E-125 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 SJPD1_1460 6f40953adf5c53455b8279c4e9b1e043 702 Pfam PF13500 AAA domain 4 208 1.5E-19 T 13-10-2018 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 Gene3D G3DSA:3.20.20.20 1 254 1.9E-102 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 Gene3D G3DSA:3.30.413.10 255 353 7.8E-32 T 13-10-2018 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4 345 5.3E-122 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 PIRSF PIRSF004640 1 354 4.1E-146 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 SUPERFAMILY SSF56014 259 345 8.5E-9 T 13-10-2018 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 SUPERFAMILY SSF51717 13 210 1.33E-11 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 Pfam PF04551 GcpE protein 7 346 2.0E-132 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 SJPD1_1981 0d798e3ad49a1b923439fd1f2a0a2153 354 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 2 350 34.169 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 PIRSF PIRSF006256 3 739 1.0E-267 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Pfam PF07503 HypF finger 159 191 8.0E-17 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Pfam PF07503 HypF finger 109 142 3.0E-18 T 13-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 ProSitePatterns PS00150 Acylphosphatase signature 1. 11 21 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Pfam PF01300 Telomere recombination 212 386 2.6E-49 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 SUPERFAMILY SSF54975 5 91 3.05E-21 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Gene3D G3DSA:3.30.110.120 255 374 3.1E-143 T 13-10-2018 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Gene3D G3DSA:3.30.420.360 387 733 1.0E-113 T 13-10-2018 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 10 734 2.5E-241 T 13-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Gene3D G3DSA:3.90.870.50 10 365 3.1E-143 T 13-10-2018 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Pfam PF00708 Acylphosphatase 9 90 1.1E-16 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 Gene3D G3DSA:3.30.420.350 486 722 1.0E-113 T 13-10-2018 SJPD1_1408 ef7ecfe923dd8535aa87aa987e1dd66e 739 SUPERFAMILY SSF55821 176 392 1.31E-42 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 SMART SM00862 146 221 1.9E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 SUPERFAMILY SSF52172 1 128 3.56E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 Gene3D G3DSA:1.10.10.10 116 221 2.9E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 SMART SM00448 2 111 2.7E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 Pfam PF00072 Response regulator receiver domain 4 112 8.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 Gene3D G3DSA:3.40.50.2300 1 115 2.0E-28 T 13-10-2018 SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 1.6E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0681 2e93ec056511d3d70e8684dbd8aaa0be 223 SUPERFAMILY SSF46894 133 222 1.5E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_2566 712d506ed495a3c86fa5d95d897ae362 181 SUPERFAMILY SSF46458 56 158 1.01E-15 T 13-10-2018 IPR009050 Globin-like superfamily SJPD1_2566 712d506ed495a3c86fa5d95d897ae362 181 Gene3D G3DSA:1.10.490.10 35 180 3.8E-36 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 SJPD1_2566 712d506ed495a3c86fa5d95d897ae362 181 Pfam PF01152 Bacterial-like globin 46 157 1.3E-11 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 SJPD1_0568 0b55d223aef50c2133d2745874c40f0b 540 Gene3D G3DSA:1.10.490.140 156 250 4.2E-6 T 13-10-2018 SJPD1_0568 0b55d223aef50c2133d2745874c40f0b 540 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 57 376 4.2E-60 T 13-10-2018 IPR003776 YcaO-like domain SJPD1_0568 0b55d223aef50c2133d2745874c40f0b 540 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 10 390 1.6E-67 T 13-10-2018 IPR003776 YcaO-like domain SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 SUPERFAMILY SSF52540 151 389 1.91E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 Gene3D G3DSA:3.40.50.300 140 322 2.5E-65 T 13-10-2018 SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 Gene3D G3DSA:1.10.8.60 323 397 4.1E-17 T 13-10-2018 SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 SUPERFAMILY SSF140990 400 550 3.66E-28 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 Gene3D G3DSA:1.20.58.760 400 552 4.3E-20 T 13-10-2018 SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 13-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 Pfam PF01434 Peptidase family M41 383 500 6.9E-15 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 SMART SM00382 187 323 1.5E-23 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1659 13860079742da91a7dfd47286685d3ad 553 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 191 320 5.7E-44 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 Pfam PF12801 4Fe-4S binding domain 180 207 2.2E-4 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 Pfam PF12801 4Fe-4S binding domain 71 109 3.2E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 SUPERFAMILY SSF54862 79 270 6.05E-21 T 13-10-2018 SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 246 257 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 Pfam PF13237 4Fe-4S dicluster domain 208 256 2.4E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 10 263 3.1E-96 T 13-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family SJPD1_0876 51fa5cee462c299c092f53f6d7edc634 277 Gene3D G3DSA:3.30.70.20 210 261 1.6E-8 T 13-10-2018 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 SMART SM00388 152 214 1.6E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 320 3.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 360 3.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 341 3.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 PRINTS PR00344 Bacterial sensor protein C-terminal signature 294 308 3.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 260 356 1.9E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 SMART SM00448 20 133 3.1E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 SUPERFAMILY SSF52172 13 142 2.99E-37 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 Gene3D G3DSA:1.10.287.130 156 211 1.9E-34 T 13-10-2018 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 SMART SM00387 257 363 3.8E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 Pfam PF00512 His Kinase A (phospho-acceptor) domain 156 213 1.2E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 Pfam PF00072 Response regulator receiver domain 22 133 4.9E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 SUPERFAMILY SSF47384 146 214 1.2E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 Gene3D G3DSA:3.30.565.10 212 355 1.9E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 SUPERFAMILY SSF55874 219 356 1.2E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2516 92b4faf2fbe0db2899be9185a5012675 368 Gene3D G3DSA:3.40.50.2300 16 155 7.1E-36 T 13-10-2018 SJPD1_2052 44465677d43bd5dd9bfd7fc84fcbbd1d 231 Gene3D G3DSA:3.40.50.300 3 230 3.5E-54 T 13-10-2018 SJPD1_2052 44465677d43bd5dd9bfd7fc84fcbbd1d 231 SMART SM00382 24 196 9.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2052 44465677d43bd5dd9bfd7fc84fcbbd1d 231 SUPERFAMILY SSF52540 15 221 2.66E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2052 44465677d43bd5dd9bfd7fc84fcbbd1d 231 Pfam PF00005 ABC transporter 20 147 1.0E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2052 44465677d43bd5dd9bfd7fc84fcbbd1d 231 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 Gene3D G3DSA:3.20.20.450 71 197 4.1E-15 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 SUPERFAMILY SSF109604 185 369 2.7E-27 T 13-10-2018 SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 Pfam PF00563 EAL domain 81 194 2.1E-14 T 13-10-2018 IPR001633 EAL domain SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 PIRSF PIRSF003180 1 408 1.3E-99 T 13-10-2018 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 Pfam PF08668 HDOD domain 212 323 8.4E-7 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 SUPERFAMILY SSF141868 5 197 2.62E-26 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2136 00ab7cb19cd56488d119c19ad847c008 409 Gene3D G3DSA:1.10.3210.10 198 383 4.6E-14 T 13-10-2018 SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 Gene3D G3DSA:2.40.40.10 75 355 3.1E-96 T 13-10-2018 IPR036908 RlpA-like domain superfamily SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 Pfam PF06725 3D domain 281 352 3.6E-21 T 13-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 SUPERFAMILY SSF50685 11 355 2.06E-103 T 13-10-2018 IPR036908 RlpA-like domain superfamily SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 SMART SM00925 113 263 4.2E-70 T 13-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 Gene3D G3DSA:2.40.240.50 112 267 3.1E-96 T 13-10-2018 SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 PIRSF PIRSF019422 1 356 1.3E-103 T 13-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A SJPD1_2654 98a24108bf3f241c967e6d78246716bd 356 Pfam PF03562 MltA specific insert domain 48 263 1.6E-69 T 13-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 SJPD1_0083 07fdf7ba3eeb3372292cc4ba3bb90e04 243 Gene3D G3DSA:3.20.20.70 20 226 9.7E-30 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0083 07fdf7ba3eeb3372292cc4ba3bb90e04 243 SUPERFAMILY SSF102114 35 182 2.49E-23 T 13-10-2018 SJPD1_0083 07fdf7ba3eeb3372292cc4ba3bb90e04 243 Pfam PF13353 4Fe-4S single cluster domain 41 136 2.0E-8 T 13-10-2018 SJPD1_0083 07fdf7ba3eeb3372292cc4ba3bb90e04 243 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 23 210 1.9E-55 T 13-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein SJPD1_0083 07fdf7ba3eeb3372292cc4ba3bb90e04 243 Pfam PF04055 Radical SAM superfamily 45 180 8.7E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 Gene3D G3DSA:3.20.20.70 114 260 1.3E-66 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 Gene3D G3DSA:3.90.1170.20 3 265 1.3E-66 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 TIGRFAM TIGR01334 modD: modD protein 3 269 1.1E-70 T 13-10-2018 IPR006242 Putative pyrophosphorylase ModD GO:0016763 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 98 267 1.0E-33 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 SUPERFAMILY SSF51690 98 267 1.1E-39 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 PIRSF PIRSF006250 1 272 2.5E-65 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 SUPERFAMILY SSF54675 3 97 4.71E-19 T 13-10-2018 SJPD1_2168 2a56780399e9001157530299ac7db3ee 273 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 10 96 1.1E-18 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 Gene3D G3DSA:3.30.450.20 246 362 1.5E-13 T 13-10-2018 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 Gene3D G3DSA:1.10.287.130 467 560 1.0E-12 T 13-10-2018 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 Pfam PF02743 Cache domain 45 351 3.5E-13 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 660 670 3.4E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 656 3.4E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 691 3.4E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 SMART SM00387 601 713 2.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 602 709 2.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 SUPERFAMILY SSF55874 561 709 6.68E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 Gene3D G3DSA:3.30.450.20 206 245 1.5E-13 T 13-10-2018 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 SUPERFAMILY SSF47384 476 559 2.35E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1188 2a9c5710175f30c65e201b71ca3db809 716 Gene3D G3DSA:3.30.565.10 562 711 1.2E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2126 00d7de139b2a8d844a202b10e36fcf44 429 Pfam PF00860 Permease family 16 386 4.1E-38 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 SJPD1_2126 00d7de139b2a8d844a202b10e36fcf44 429 PIRSF PIRSF005353 1 428 3.0E-144 T 13-10-2018 IPR026033 Purine permease PbuG-like SJPD1_2270 1ceed8eefc131e202ff7665d99aa874a 242 Gene3D G3DSA:3.20.20.370 1 242 2.4E-99 T 13-10-2018 SJPD1_2270 1ceed8eefc131e202ff7665d99aa874a 242 Pfam PF03746 LamB/YcsF family 2 241 1.6E-96 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 SJPD1_2270 1ceed8eefc131e202ff7665d99aa874a 242 SUPERFAMILY SSF88713 2 241 4.97E-93 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 Pfam PF00994 Probable molybdopterin binding domain 178 316 6.1E-17 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 Gene3D G3DSA:2.170.190.11 49 139 3.7E-95 T 13-10-2018 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 Gene3D G3DSA:2.40.340.10 327 397 3.7E-95 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 SMART SM00852 178 317 1.7E-25 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 SUPERFAMILY SSF63867 326 403 1.96E-7 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 165 2.5E-31 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 SUPERFAMILY SSF63882 7 172 5.36E-41 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 Gene3D G3DSA:3.90.105.10 26 172 3.7E-95 T 13-10-2018 SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 SUPERFAMILY SSF53218 174 319 4.19E-33 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_2662 df70f93a8a9a36e71379348a8aaa8ef2 404 Gene3D G3DSA:3.40.980.10 173 326 3.7E-95 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SUPERFAMILY SSF55073 439 596 3.02E-53 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SMART SM00091 308 374 3.5E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Pfam PF03924 CHASE domain 110 197 2.2E-12 T 13-10-2018 IPR006189 CHASE domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Gene3D G3DSA:3.20.20.450 607 858 1.3E-97 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SMART SM00052 604 850 8.7E-114 T 13-10-2018 IPR001633 EAL domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SUPERFAMILY SSF55785 313 425 4.54E-19 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SUPERFAMILY SSF141868 609 857 1.26E-89 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Gene3D G3DSA:3.30.70.270 433 606 1.8E-61 T 13-10-2018 SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SMART SM00267 423 594 7.9E-69 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Pfam PF00990 Diguanylate cyclase, GGDEF domain 435 589 3.6E-50 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 313 429 2.3E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 431 592 6.6E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Gene3D G3DSA:3.30.450.20 294 432 1.3E-27 T 13-10-2018 SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 SMART SM01079 66 225 2.6E-21 T 13-10-2018 IPR006189 CHASE domain SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Pfam PF08448 PAS fold 314 424 1.1E-15 T 13-10-2018 IPR013656 PAS fold-4 SJPD1_1883 b0df416d8fc9cb8ed6c516ac4db0c323 870 Pfam PF00563 EAL domain 610 845 4.8E-72 T 13-10-2018 IPR001633 EAL domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SMART SM00091 463 529 0.001 T 13-10-2018 IPR000014 PAS domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SUPERFAMILY SSF55785 376 463 1.08E-9 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Pfam PF00563 EAL domain 767 1000 1.3E-70 T 13-10-2018 IPR001633 EAL domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Pfam PF13426 PAS domain 474 576 7.2E-15 T 13-10-2018 IPR000014 PAS domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Gene3D G3DSA:3.40.190.10 25 257 3.4E-32 T 13-10-2018 SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Gene3D G3DSA:3.30.70.270 587 763 6.4E-61 T 13-10-2018 SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Gene3D G3DSA:3.40.190.10 110 228 3.4E-32 T 13-10-2018 SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 467 584 2.9E-17 T 13-10-2018 IPR000014 PAS domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 584 748 2.6E-42 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SUPERFAMILY SSF55785 469 575 6.11E-25 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SMART SM00267 577 749 7.9E-65 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SUPERFAMILY SSF53850 33 304 4.08E-20 T 13-10-2018 SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 24 269 2.4E-47 T 13-10-2018 SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Pfam PF00990 Diguanylate cyclase, GGDEF domain 588 745 1.1E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Gene3D G3DSA:3.20.20.450 764 1015 2.6E-90 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SUPERFAMILY SSF141868 766 1012 8.11E-85 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SMART SM00052 759 1005 1.0E-101 T 13-10-2018 IPR001633 EAL domain SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 SUPERFAMILY SSF55073 593 750 4.55E-51 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Gene3D G3DSA:3.30.450.20 329 463 6.9E-13 T 13-10-2018 SJPD1_0555 bbcf7721fe08bb8cada46a8b9032cd07 1016 Gene3D G3DSA:3.30.450.20 464 586 3.2E-30 T 13-10-2018 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 Gene3D G3DSA:3.30.450.20 53 275 3.5E-46 T 13-10-2018 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 Pfam PF02743 Cache domain 36 263 2.8E-29 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 Pfam PF00672 HAMP domain 305 351 1.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 Gene3D G3DSA:3.30.450.20 64 175 3.5E-46 T 13-10-2018 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 Gene3D G3DSA:1.10.287.950 302 632 6.1E-62 T 13-10-2018 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 SUPERFAMILY SSF58104 323 631 9.16E-59 T 13-10-2018 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 SMART SM00304 301 355 1.2E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 SUPERFAMILY SSF103190 103 183 5.49E-13 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 407 593 1.2E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2722 efd388db269274175d6b0308e0e7b4d3 632 SMART SM00283 370 631 2.5E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0626 a9051c450d335cbda3aaf0f45f37ebe6 131 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 124 2.6E-37 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0626 a9051c450d335cbda3aaf0f45f37ebe6 131 SUPERFAMILY SSF51344 2 84 1.12E-24 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0626 a9051c450d335cbda3aaf0f45f37ebe6 131 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 124 18.557 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0626 a9051c450d335cbda3aaf0f45f37ebe6 131 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 84 1.0E-22 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0626 a9051c450d335cbda3aaf0f45f37ebe6 131 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 1.8E-27 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0626 a9051c450d335cbda3aaf0f45f37ebe6 131 Gene3D G3DSA:2.60.15.10 1 129 3.0E-33 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 18 84 1.2E-12 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 SUPERFAMILY SSF55681 90 335 2.35E-74 T 13-10-2018 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 Pfam PF01409 tRNA synthetases class II core domain (F) 90 334 5.4E-99 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 6 334 45.636 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 SUPERFAMILY SSF46589 12 95 1.15E-13 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 Gene3D G3DSA:3.30.930.10 6 335 8.2E-110 T 13-10-2018 SJPD1_0726 5b7fd2963ada438b1149e827b9679391 335 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 334 1.9E-101 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 123 151 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 8 222 2.1E-44 T 13-10-2018 SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 66 77 6.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 155 6.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 116 124 6.9E-10 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 SUPERFAMILY SSF51735 2 222 2.94E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 110 126 5.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 173 5.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 5.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 66 77 5.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 205 5.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 155 5.8E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2061 c587e3d4ef49a993b54630ca3ffbdab3 228 Gene3D G3DSA:3.40.50.720 1 226 4.5E-60 T 13-10-2018 SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 SUPERFAMILY SSF46785 601 662 1.5E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 SUPERFAMILY SSF52540 282 571 7.24E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 Pfam PF01580 FtsK/SpoIIIE family 449 499 2.7E-14 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 Pfam PF01580 FtsK/SpoIIIE family 309 445 5.0E-48 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 Gene3D G3DSA:3.40.50.300 306 584 9.7E-105 T 13-10-2018 SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 SMART SM00382 344 520 4.9E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 Pfam PF09397 Ftsk gamma domain 603 663 4.4E-24 T 13-10-2018 IPR018541 FtsK gamma domain SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 Gene3D G3DSA:3.30.980.40 201 305 1.7E-34 T 13-10-2018 SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 Gene3D G3DSA:1.10.10.10 597 662 2.5E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1570 d15871239b679a13facc3aac7dcc7ac1 663 SMART SM00843 601 663 1.9E-26 T 13-10-2018 IPR018541 FtsK gamma domain SJPD1_0134 109fff55d58e9f14911811d5e7ed0928 75 Pfam PF06518 Protein of unknown function (DUF1104) 20 68 4.4E-7 T 13-10-2018 IPR009488 Protein of unknown function DUF1104 SJPD1_0134 109fff55d58e9f14911811d5e7ed0928 75 Gene3D G3DSA:1.20.120.1430 10 75 2.9E-8 T 13-10-2018 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Gene3D G3DSA:1.10.730.10 338 509 2.8E-34 T 13-10-2018 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 519 645 3.3E-36 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Pfam PF01588 Putative tRNA binding domain 551 642 3.0E-25 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Gene3D G3DSA:2.40.50.140 535 645 2.8E-31 T 13-10-2018 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 8 143 3.1E-14 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 PRINTS PR01041 Methionyl-tRNA synthetase signature 226 237 7.0E-36 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 7.0E-36 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 PRINTS PR01041 Methionyl-tRNA synthetase signature 349 360 7.0E-36 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 PRINTS PR01041 Methionyl-tRNA synthetase signature 257 272 7.0E-36 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 7.0E-36 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 7.0E-36 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 506 46.503 T 13-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 507 4.2E-160 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Gene3D G3DSA:3.40.50.620 6 334 6.0E-150 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Pfam PF09334 tRNA synthetases class I (M) 145 361 3.3E-66 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 Gene3D G3DSA:2.170.220.10 116 228 6.0E-150 T 13-10-2018 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 SUPERFAMILY SSF52374 3 348 7.51E-111 T 13-10-2018 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 SUPERFAMILY SSF47323 350 507 4.11E-30 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0825 1137b8e87a81036d2385414084167d6d 646 SUPERFAMILY SSF50249 545 645 3.92E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 SUPERFAMILY SSF102114 294 522 1.57E-9 T 13-10-2018 SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 Pfam PF04055 Radical SAM superfamily 296 502 2.9E-16 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 2 558 1.4E-239 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 Pfam PF08497 Radical SAM N-terminal 2 294 2.3E-117 T 13-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 2 560 48.835 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 SMART SM00729 291 545 3.7E-4 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 Gene3D G3DSA:3.80.30.20 291 556 2.7E-14 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_1397 7881ac59d2766030e892497e6bf7c7c8 571 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 295 315 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 SJPD1_0899 b91695fd11582a7b555c7a9b2289f0e3 560 Gene3D G3DSA:3.40.190.10 60 283 5.2E-46 T 13-10-2018 SJPD1_0899 b91695fd11582a7b555c7a9b2289f0e3 560 PIRSF PIRSF002741 20 351 4.0E-30 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 SJPD1_0899 b91695fd11582a7b555c7a9b2289f0e3 560 PIRSF PIRSF002741 472 533 170.0 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 SJPD1_0899 b91695fd11582a7b555c7a9b2289f0e3 560 SUPERFAMILY SSF53850 58 530 2.71E-47 T 13-10-2018 SJPD1_0899 b91695fd11582a7b555c7a9b2289f0e3 560 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 334 9.0E-36 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain SJPD1_0899 b91695fd11582a7b555c7a9b2289f0e3 560 Gene3D G3DSA:3.10.105.10 284 450 5.2E-46 T 13-10-2018 SJPD1_1881 be38bf0b5cf7332473e62adecde678ca 215 Gene3D G3DSA:3.40.1050.10 1 210 1.3E-61 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 SJPD1_1881 be38bf0b5cf7332473e62adecde678ca 215 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 88 108 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SJPD1_1881 be38bf0b5cf7332473e62adecde678ca 215 SUPERFAMILY SSF53056 4 210 6.54E-56 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 SJPD1_1881 be38bf0b5cf7332473e62adecde678ca 215 SMART SM00947 31 201 5.6E-55 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SJPD1_1881 be38bf0b5cf7332473e62adecde678ca 215 Pfam PF00484 Carbonic anhydrase 39 196 6.5E-43 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SJPD1_1881 be38bf0b5cf7332473e62adecde678ca 215 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 43 50 - T 13-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 Gene3D G3DSA:3.10.20.10 27 108 5.8E-14 T 13-10-2018 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 21 259 1.8E-52 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 Pfam PF02634 FdhD/NarQ family 25 258 4.2E-68 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 SUPERFAMILY SSF53927 4 259 4.21E-68 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 1 259 27.851 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 Gene3D G3DSA:3.40.140.10 116 262 1.9E-42 T 13-10-2018 SJPD1_2555 57c3b21e792caa3d50ac65ba5398b7fa 262 PIRSF PIRSF015626 2 262 1.6E-78 T 13-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Gene3D G3DSA:3.90.650.10 25 366 1.6E-131 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 SUPERFAMILY SSF55326 10 196 6.73E-48 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 733 294.536 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Pfam PF00586 AIR synthase related protein, N-terminal domain 454 557 3.1E-19 T 13-10-2018 IPR016188 PurM-like, N-terminal domain SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Pfam PF00586 AIR synthase related protein, N-terminal domain 82 188 3.2E-22 T 13-10-2018 IPR016188 PurM-like, N-terminal domain SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Gene3D G3DSA:3.90.650.10 567 729 1.5E-24 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 13 724 1.4E-287 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Gene3D G3DSA:3.30.1330.10 39 193 1.6E-131 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Gene3D G3DSA:3.30.1330.10 391 561 1.4E-53 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 Pfam PF02769 AIR synthase related protein, C-terminal domain 203 355 2.7E-31 T 13-10-2018 IPR010918 PurM-like, C-terminal domain SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 SUPERFAMILY SSF55326 395 565 4.19E-50 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 SUPERFAMILY SSF56042 569 721 1.44E-22 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 PIRSF PIRSF001587 1 732 6.3E-301 T 13-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1829 1ef56b1562906e4fed87cd39331164a7 733 SUPERFAMILY SSF56042 201 425 5.83E-51 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_2050 98dc3070e4041f05f094f17260c45e8e 231 Gene3D G3DSA:3.40.710.10 1 227 4.6E-59 T 13-10-2018 SJPD1_2050 98dc3070e4041f05f094f17260c45e8e 231 SUPERFAMILY SSF56601 1 210 4.0E-58 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like SJPD1_2050 98dc3070e4041f05f094f17260c45e8e 231 Pfam PF00905 Penicillin binding protein transpeptidase domain 37 176 7.7E-21 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 SMART SM00437 242 504 1.5E-112 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 SUPERFAMILY SSF56712 2 581 3.53E-180 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 77 90 8.0E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 292 301 8.0E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 162 180 8.0E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 467 481 8.0E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 370 386 8.0E-34 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Hamap MF_00952 DNA topoisomerase 1 [topA]. 2 643 53.036 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Gene3D G3DSA:1.10.460.10 135 544 1.6E-153 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 SUPERFAMILY SSF57783 563 609 1.36E-11 T 13-10-2018 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Gene3D G3DSA:2.70.20.10 184 451 1.6E-153 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 SMART SM00493 2 103 4.1E-28 T 13-10-2018 IPR006171 TOPRIM domain SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 SMART SM00436 104 192 1.3E-44 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Gene3D G3DSA:3.30.65.10 611 660 1.2E-5 T 13-10-2018 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Gene3D G3DSA:3.30.65.10 554 610 7.7E-11 T 13-10-2018 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Gene3D G3DSA:3.40.50.140 1 134 6.1E-49 T 13-10-2018 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Pfam PF01751 Toprim domain 4 113 1.8E-28 T 13-10-2018 IPR006171 TOPRIM domain SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 570 606 9.2E-15 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 621 656 2.3E-13 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 SUPERFAMILY SSF57783 617 652 3.74E-9 T 13-10-2018 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 279 301 - T 13-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Pfam PF01131 DNA topoisomerase 130 540 1.4E-124 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 Gene3D G3DSA:1.10.290.10 250 385 1.6E-153 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 SJPD1_2804 87327f108f956b23bd1a234a02c75eb2 690 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 4 604 7.0E-242 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 Gene3D G3DSA:3.30.70.1440 161 387 1.3E-74 T 13-10-2018 SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 Pfam PF00873 AcrB/AcrD/AcrF family 6 544 3.2E-41 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 SUPERFAMILY SSF82693 52 148 1.99E-7 T 13-10-2018 SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 Gene3D G3DSA:1.20.1640.10 6 544 1.3E-74 T 13-10-2018 SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 Gene3D G3DSA:3.30.2090.10 212 310 1.3E-74 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 Gene3D G3DSA:3.30.70.1430 51 159 1.3E-74 T 13-10-2018 SJPD1_0736 a2b9ea796f10cfba58a2e165e462097e 551 SUPERFAMILY SSF82866 372 546 1.01E-29 T 13-10-2018 SJPD1_1161 9ad3ca67330fafc445e55cfb7d490305 380 Gene3D G3DSA:3.20.20.370 167 380 8.9E-64 T 13-10-2018 SJPD1_1161 9ad3ca67330fafc445e55cfb7d490305 380 Pfam PF04748 Divergent polysaccharide deacetylase 174 380 2.1E-60 T 13-10-2018 IPR006837 Divergent polysaccharide deacetylase SJPD1_1161 9ad3ca67330fafc445e55cfb7d490305 380 SUPERFAMILY SSF88713 170 380 1.42E-60 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 441 590 2.7E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 SUPERFAMILY SSF58104 318 626 4.58E-55 T 13-10-2018 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 SUPERFAMILY SSF103190 91 183 1.12E-12 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 Gene3D G3DSA:1.10.287.950 296 627 1.5E-55 T 13-10-2018 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 Gene3D G3DSA:3.30.450.20 51 267 4.1E-43 T 13-10-2018 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 SMART SM00283 358 626 3.3E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 Pfam PF02743 Cache domain 32 258 4.3E-35 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 SMART SM00304 296 350 1.7E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1871 62b6c45828755969b30c2da40f0eae3d 627 Gene3D G3DSA:3.30.450.20 62 173 4.1E-43 T 13-10-2018 SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 Pfam PF12002 MgsA AAA+ ATPase C terminal 244 396 4.6E-54 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 Gene3D G3DSA:3.40.50.300 4 153 8.7E-36 T 13-10-2018 SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 12 129 6.6E-17 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 SUPERFAMILY SSF48019 230 398 1.02E-58 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 SMART SM00382 42 177 1.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 SUPERFAMILY SSF52540 8 203 1.09E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 Gene3D G3DSA:1.10.3710.10 325 404 9.5E-12 T 13-10-2018 SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 Gene3D G3DSA:1.20.272.10 225 323 8.9E-41 T 13-10-2018 SJPD1_0099 42bee8aac994b550a0fefe700a6d918d 404 Pfam PF16193 AAA C-terminal domain 173 243 3.7E-14 T 13-10-2018 IPR032423 AAA C-terminal domain SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 SUPERFAMILY SSF51998 213 770 1.99E-177 T 13-10-2018 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 546 568 5.5E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 289 308 5.5E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 574 597 5.5E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 508 531 5.5E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 649 676 5.5E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 PRINTS PR01183 Ribonucleotide reductase large chain signature 420 431 5.5E-42 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 Pfam PF02867 Ribonucleotide reductase, barrel domain 214 765 7.7E-167 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 SUPERFAMILY SSF48168 7 212 6.15E-67 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 638 660 - T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 139 769 3.2E-190 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 Pfam PF03477 ATP cone domain 3 88 6.7E-16 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 SJPD1_0087 d0aa314a6fa0fa7ed625a64db1c6ab60 788 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 136 209 6.3E-25 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_1013 f96c00cfea18011d4c5de4dfd7e9e935 319 SUPERFAMILY SSF56349 17 294 3.83E-58 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_1013 f96c00cfea18011d4c5de4dfd7e9e935 319 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 17 73 3.2E-10 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 SJPD1_1013 f96c00cfea18011d4c5de4dfd7e9e935 319 Gene3D G3DSA:1.10.150.130 14 121 9.3E-21 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_1013 f96c00cfea18011d4c5de4dfd7e9e935 319 Pfam PF00589 Phage integrase family 125 292 1.4E-20 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_1013 f96c00cfea18011d4c5de4dfd7e9e935 319 Gene3D G3DSA:1.10.443.10 122 305 3.9E-36 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 Gene3D G3DSA:1.10.760.10 754 863 2.4E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 SUPERFAMILY SSF50974 52 518 6.67E-89 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 Pfam PF13473 Cupredoxin-like domain 555 629 2.2E-7 T 13-10-2018 IPR028096 EfeO-type cupredoxin-like domain SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 SUPERFAMILY SSF49503 479 657 6.19E-26 T 13-10-2018 IPR008972 Cupredoxin SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 TIGRFAM TIGR04246 nitrous_NosZ_Gp: nitrous-oxide reductase, Sec-dependent 48 645 1.1E-265 T 13-10-2018 IPR026468 Nitrous-oxide reductase, Sec-dependent SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 SUPERFAMILY SSF46626 764 861 1.1E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 Gene3D G3DSA:2.60.40.420 527 644 2.0E-30 T 13-10-2018 IPR008972 Cupredoxin SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 Pfam PF00034 Cytochrome c 772 859 4.4E-5 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1000 bd014d9078f7759d21fb1a84dbecaf6e 867 Gene3D G3DSA:2.130.10.10 52 526 6.3E-171 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 SJPD1_2187 04380e11c549384327dd12f97c6958d5 151 Gene3D G3DSA:3.30.530.20 4 149 2.9E-15 T 13-10-2018 IPR023393 START-like domain superfamily SJPD1_2187 04380e11c549384327dd12f97c6958d5 151 SUPERFAMILY SSF55961 4 138 4.54E-19 T 13-10-2018 SJPD1_2187 04380e11c549384327dd12f97c6958d5 151 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 13 130 1.5E-8 T 13-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 SJPD1_2001 25cf5f4ba99345132fad1ca719086769 299 SUPERFAMILY SSF51261 29 262 9.29E-53 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_2001 25cf5f4ba99345132fad1ca719086769 299 Pfam PF01551 Peptidase family M23 161 258 2.4E-31 T 13-10-2018 IPR016047 Peptidase M23 SJPD1_2001 25cf5f4ba99345132fad1ca719086769 299 Gene3D G3DSA:2.70.70.10 105 265 4.4E-44 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_1435 f7ae684640684c506169f68fda999bfb 385 Gene3D G3DSA:2.40.30.170 286 362 3.2E-16 T 13-10-2018 SJPD1_1435 f7ae684640684c506169f68fda999bfb 385 Gene3D G3DSA:1.10.287.470 114 250 3.2E-16 T 13-10-2018 SJPD1_1435 f7ae684640684c506169f68fda999bfb 385 Gene3D G3DSA:2.40.50.100 251 285 3.2E-16 T 13-10-2018 SJPD1_1435 f7ae684640684c506169f68fda999bfb 385 Pfam PF13533 Biotin-lipoyl like 51 96 7.1E-7 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain SJPD1_1435 f7ae684640684c506169f68fda999bfb 385 Pfam PF13437 HlyD family secretion protein 250 335 3.3E-15 T 13-10-2018 SJPD1_1435 f7ae684640684c506169f68fda999bfb 385 Gene3D G3DSA:2.40.50.100 49 113 4.8E-9 T 13-10-2018 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SUPERFAMILY SSF55666 141 260 5.6E-19 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SUPERFAMILY SSF50249 675 744 3.13E-15 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF01138 3' exoribonuclease family, domain 1 352 484 4.0E-20 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF01138 3' exoribonuclease family, domain 1 19 139 1.2E-15 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SUPERFAMILY SSF54211 3 139 3.64E-40 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Gene3D G3DSA:2.40.50.140 678 747 6.2E-20 T 13-10-2018 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 PIRSF PIRSF005499 1 746 3.4E-257 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF00575 S1 RNA binding domain 679 735 3.8E-13 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF00013 KH domain 586 642 1.6E-9 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 273 349 5.4E-11 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 746 26.408 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Gene3D G3DSA:3.30.230.70 263 576 1.8E-98 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SMART SM00316 677 746 2.4E-15 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SUPERFAMILY SSF54211 319 516 3.95E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SMART SM00322 580 646 1.2E-7 T 13-10-2018 IPR004087 K Homology domain GO:0003676 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SUPERFAMILY SSF55666 479 572 2.8E-24 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Gene3D G3DSA:3.30.1370.10 577 651 1.3E-14 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF03725 3' exoribonuclease family, domain 2 143 236 7.1E-12 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 Pfam PF03725 3' exoribonuclease family, domain 2 489 558 3.0E-7 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 SJPD1_0717 9a721d17cb8b582f1d7a4bd574d9b9ff 747 SUPERFAMILY SSF54791 584 652 2.78E-14 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 SJPD1_2362 368918f70581c6579c3cceac903d8176 211 SUPERFAMILY SSF56784 1 209 1.6E-49 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_2362 368918f70581c6579c3cceac903d8176 211 Gene3D G3DSA:3.40.50.1000 4 196 1.9E-46 T 13-10-2018 IPR023214 HAD superfamily SJPD1_2362 368918f70581c6579c3cceac903d8176 211 Gene3D G3DSA:1.10.150.240 15 80 1.9E-46 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 SJPD1_2362 368918f70581c6579c3cceac903d8176 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 180 1.0E-38 T 13-10-2018 SJPD1_2362 368918f70581c6579c3cceac903d8176 211 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 99 174 1.3E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_0354 dd978612a98affe1eaeadc25bc937fec 120 Gene3D G3DSA:1.10.3730.20 1 119 3.2E-5 T 13-10-2018 SJPD1_0354 dd978612a98affe1eaeadc25bc937fec 120 Pfam PF00892 EamA-like transporter family 38 118 8.1E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0354 dd978612a98affe1eaeadc25bc937fec 120 SUPERFAMILY SSF103481 46 118 1.11E-10 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 SUPERFAMILY SSF64518 1 319 2.48E-56 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Gene3D G3DSA:1.20.58.1830 5 33 3.3E-60 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Gene3D G3DSA:2.170.280.10 177 400 3.3E-60 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Pfam PF07196 Flagellin hook IN motif 252 302 1.3E-5 T 13-10-2018 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Gene3D G3DSA:2.30.220.10 192 271 3.3E-60 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 PRINTS PR00207 Flagellin signature 76 95 2.0E-20 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 PRINTS PR00207 Flagellin signature 111 134 2.0E-20 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 PRINTS PR00207 Flagellin signature 37 54 2.0E-20 T 13-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Gene3D G3DSA:1.20.1330.10 648 763 1.1E-11 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Gene3D G3DSA:1.10.8.410 764 813 2.8E-20 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 143 1.5E-41 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 SUPERFAMILY SSF64518 320 813 2.88E-21 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Gene3D G3DSA:1.20.1330.10 45 414 3.3E-60 T 13-10-2018 SJPD1_2803 6787199f9773a69c7be6dc0582ee9755 813 Pfam PF00700 Bacterial flagellin C-terminal helical region 727 812 4.9E-27 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 PIRSF PIRSF006641 1 366 2.6E-152 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 SUPERFAMILY SSF81271 282 363 1.87E-36 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 41.678 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 Gene3D G3DSA:3.10.20.30 49 364 3.1E-142 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 Gene3D G3DSA:1.10.150.300 114 202 3.1E-142 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 SUPERFAMILY SSF52540 4 304 2.08E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 Gene3D G3DSA:3.40.50.300 5 281 3.1E-142 T 13-10-2018 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 27 45 1.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 71 86 1.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 88 106 1.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.1E-34 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 Pfam PF01926 50S ribosome-binding GTPase 5 123 6.6E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 4.2E-145 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 SJPD1_0891 96852685f8be9ad8b2e4a94ea82abaa3 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 3.9E-40 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 SUPERFAMILY SSF52821 62 159 7.46E-18 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 Gene3D G3DSA:3.40.250.10 300 384 4.9E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 SUPERFAMILY SSF52821 291 372 1.83E-17 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 SMART SM00450 59 159 2.6E-11 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 SMART SM00450 161 260 2.3E-14 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 SMART SM00450 293 392 8.5E-9 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 Pfam PF00581 Rhodanese-like domain 71 153 5.3E-10 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 Pfam PF00581 Rhodanese-like domain 169 257 3.5E-12 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 Pfam PF00581 Rhodanese-like domain 297 373 2.9E-9 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 Gene3D G3DSA:3.40.250.10 159 265 7.4E-18 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 Gene3D G3DSA:3.40.250.10 41 158 2.0E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2861 a57b6946ae7191ea0c93d7c8fcfe6367 404 SUPERFAMILY SSF52821 164 264 1.83E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 155 321 5.5E-39 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 SMART SM00052 333 579 6.8E-122 T 13-10-2018 IPR001633 EAL domain SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 SUPERFAMILY SSF141868 338 586 1.15E-92 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 SUPERFAMILY SSF55785 42 146 1.59E-8 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 Pfam PF00990 Diguanylate cyclase, GGDEF domain 157 319 5.8E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 SMART SM00267 146 323 2.8E-57 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 Pfam PF00563 EAL domain 340 574 8.5E-74 T 13-10-2018 IPR001633 EAL domain SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 SUPERFAMILY SSF55073 162 325 3.22E-48 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 Gene3D G3DSA:3.30.450.20 41 153 1.5E-8 T 13-10-2018 SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 152 1.6E-5 T 13-10-2018 IPR000014 PAS domain SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 Gene3D G3DSA:3.20.20.450 337 586 2.7E-101 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1214 8ce04774724e1c4886e14ef63870bbad 587 Gene3D G3DSA:3.30.70.270 154 336 3.0E-61 T 13-10-2018 SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 Pfam PF00687 Ribosomal protein L1p/L10e family 32 221 2.8E-56 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 4 229 4.4E-103 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 SUPERFAMILY SSF56808 7 225 3.53E-82 T 13-10-2018 IPR023674 Ribosomal protein L1-like SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 3 230 42.457 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 Gene3D G3DSA:3.40.50.790 69 160 5.9E-82 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 PIRSF PIRSF002155 1 228 8.8E-80 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 140 - T 13-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0437 56b4761dfba346ae16eacc630332a3ae 234 Gene3D G3DSA:3.30.190.20 23 225 5.9E-82 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 Pfam PF00206 Lyase 7 301 9.9E-77 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 Hamap MF_00006 Argininosuccinate lyase [argH]. 3 455 40.677 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 7.9E-26 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 7.9E-26 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 7.9E-26 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 7.9E-26 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 Gene3D G3DSA:1.10.275.10 26 230 2.2E-181 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 SUPERFAMILY SSF48557 7 456 9.27E-140 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 Pfam PF14698 Argininosuccinate lyase C-terminal 366 432 2.6E-18 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 Gene3D G3DSA:1.10.40.30 361 434 2.2E-181 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 Gene3D G3DSA:1.20.200.10 120 450 2.2E-181 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 TIGRFAM TIGR00838 argH: argininosuccinate lyase 4 453 3.5E-182 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.8E-62 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.8E-62 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.8E-62 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.8E-62 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.8E-62 T 13-10-2018 SJPD1_0724 fe44695df0f6dd914d7635d48a77d983 461 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.8E-62 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 SUPERFAMILY SSF46548 7 119 2.14E-21 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 323 344 5.4E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 234 258 5.4E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 359 377 5.4E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 110 132 5.4E-13 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 238 256 3.5E-19 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 349 371 3.5E-19 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 321 337 3.5E-19 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 130 3.5E-19 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 SUPERFAMILY SSF51971 107 328 1.24E-57 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 SUPERFAMILY SSF51971 305 389 2.24E-5 T 13-10-2018 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 109 381 3.6E-30 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 6 96 1.3E-25 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 Gene3D G3DSA:1.10.1060.10 2 108 1.0E-28 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 Gene3D G3DSA:3.50.50.60 234 398 1.6E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1616 b146d9946bae0a0129aad43ea129b533 398 Gene3D G3DSA:3.50.50.60 109 225 5.3E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 Pfam PF02785 Biotin carboxylase C-terminal domain 339 445 3.5E-37 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 156 170 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 SUPERFAMILY SSF51246 334 451 2.25E-41 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 SUPERFAMILY SSF52440 4 115 1.8E-42 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 326 4.5E-78 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 SMART SM00878 339 445 3.0E-56 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 Gene3D G3DSA:3.30.470.130 1 451 2.2E-182 T 13-10-2018 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 SUPERFAMILY SSF56059 86 351 6.89E-67 T 13-10-2018 SJPD1_2308 3ff1f90fc4c8823a0013802b05561f59 481 Pfam PF00289 Biotin carboxylase, N-terminal domain 6 113 4.0E-40 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2263 700ba5caec774344ef08c7531940c4e1 180 Pfam PF08534 Redoxin 20 162 3.7E-18 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 SJPD1_2263 700ba5caec774344ef08c7531940c4e1 180 SUPERFAMILY SSF52833 1 162 9.17E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_2263 700ba5caec774344ef08c7531940c4e1 180 Gene3D G3DSA:3.40.30.10 2 170 1.4E-44 T 13-10-2018 SJPD1_2263 700ba5caec774344ef08c7531940c4e1 180 Hamap MF_00269 Thiol peroxidase [tpx]. 3 166 36.319 T 13-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_2263 700ba5caec774344ef08c7531940c4e1 180 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 SMART SM01185 69 123 1.9E-24 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Gene3D G3DSA:2.30.30.30 1 64 5.8E-27 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Pfam PF09285 Elongation factor P, C-terminal 131 185 3.0E-21 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 SUPERFAMILY SSF50249 130 186 2.31E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 PIRSF PIRSF005901 2 187 1.2E-60 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 TIGRFAM TIGR00038 efp: translation elongation factor P 4 186 4.9E-71 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Hamap MF_00141 Elongation factor P [efp]. 3 186 47.066 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 SUPERFAMILY SSF50249 67 131 3.0E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Gene3D G3DSA:2.40.50.140 130 187 3.0E-22 T 13-10-2018 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 5.6E-21 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 SUPERFAMILY SSF50104 2 65 1.05E-21 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 SMART SM00841 131 185 3.2E-27 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 ProSitePatterns PS01275 Elongation factor P signature. 151 170 - T 13-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 4.2E-26 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like SJPD1_0739 3d0fb83719ea62cc0e449b3520182701 187 Gene3D G3DSA:2.40.50.140 66 129 8.2E-23 T 13-10-2018 SJPD1_2772 76bceba9b411837e712b708cb380a415 319 Pfam PF03773 Predicted permease 26 316 7.8E-65 T 13-10-2018 IPR005524 Predicted permease DUF318 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 PIRSF PIRSF001604 2 648 1.8E-223 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SMART SM00292 574 648 4.5E-9 T 13-10-2018 IPR001357 BRCT domain SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SUPERFAMILY SSF47781 394 552 1.6E-48 T 13-10-2018 IPR010994 RuvA domain 2-like SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 110 139 - T 13-10-2018 IPR018239 NAD-dependent DNA ligase, active site SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 12 643 8.9E-227 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 312 388 2.1E-32 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SUPERFAMILY SSF52113 574 647 4.36E-18 T 13-10-2018 IPR036420 BRCT domain superfamily SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Gene3D G3DSA:2.40.50.140 309 395 4.0E-32 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SUPERFAMILY SSF50249 309 389 6.34E-26 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Gene3D G3DSA:3.40.50.10190 572 648 5.7E-25 T 13-10-2018 IPR036420 BRCT domain superfamily SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 575 643 1.1E-11 T 13-10-2018 IPR001357 BRCT domain SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 397 421 1.4E-5 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 307 1.5E-105 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SUPERFAMILY SSF56091 4 307 1.5E-103 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Hamap MF_01588 DNA ligase [ligA]. 1 647 48.177 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Pfam PF12826 Helix-hairpin-helix motif 498 553 6.4E-10 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Gene3D G3DSA:3.30.470.90 67 307 9.1E-84 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SMART SM00532 1 435 9.0E-220 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SMART SM00278 529 548 2.5 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SMART SM00278 499 518 150.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SMART SM00278 467 486 1.3 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 SMART SM00278 433 452 240.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Gene3D G3DSA:1.10.150.20 419 491 9.2E-26 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Pfam PF14520 Helix-hairpin-helix domain 433 487 1.0E-5 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Gene3D G3DSA:1.10.287.610 6 66 4.1E-15 T 13-10-2018 SJPD1_1733 cc1d8a082577e11608f56ffc72e5ef36 648 Gene3D G3DSA:1.10.150.20 492 561 1.0E-11 T 13-10-2018 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 5 548 9.3E-171 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 681 22.174 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 242 257 2.7E-30 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 2.7E-30 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 48 60 2.7E-30 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 400 419 2.7E-30 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 313 329 2.7E-30 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_1878 2ae3ff74451afe157ddb2f5f12146c80 683 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 4 681 5.7E-206 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 543 48.413 T 13-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:3.90.800.10 97 205 7.0E-98 T 13-10-2018 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:2.40.240.10 338 540 1.6E-71 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:3.40.50.620 24 244 7.0E-98 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 338 522 2.1E-53 T 13-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 SUPERFAMILY SSF89095 576 628 4.97E-5 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Pfam PF02637 GatB domain 605 747 2.1E-43 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 SUPERFAMILY SSF89095 611 747 1.57E-22 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 SMART SM00845 604 747 6.7E-63 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:1.10.1160.10 258 336 1.9E-31 T 13-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:1.10.150.380 578 685 2.3E-24 T 13-10-2018 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 PRINTS PR00987 Glutamyl-tRNA synthetase signature 27 39 8.0E-8 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 PRINTS PR00987 Glutamyl-tRNA synthetase signature 56 69 8.0E-8 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 PRINTS PR00987 Glutamyl-tRNA synthetase signature 206 216 8.0E-8 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 PRINTS PR00987 Glutamyl-tRNA synthetase signature 41 52 8.0E-8 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:2.40.240.10 345 462 1.6E-71 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Gene3D G3DSA:1.10.10.410 687 749 5.1E-24 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 24 334 1.9E-103 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 SUPERFAMILY SSF50715 337 542 5.75E-62 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 SUPERFAMILY SSF52374 24 343 1.19E-90 T 13-10-2018 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 30 41 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0833 287e03d49c740cc336b4476f2b633321 750 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 25 545 4.3E-212 T 13-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 Gene3D G3DSA:3.30.420.40 1 110 4.8E-28 T 13-10-2018 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 SUPERFAMILY SSF109604 312 472 3.77E-22 T 13-10-2018 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 Gene3D G3DSA:3.30.420.150 111 296 7.7E-44 T 13-10-2018 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 PIRSF PIRSF001267 1 480 1.2E-84 T 13-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 SUPERFAMILY SSF53067 131 295 3.02E-36 T 13-10-2018 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 SUPERFAMILY SSF53067 5 127 1.12E-30 T 13-10-2018 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 Pfam PF02541 Ppx/GppA phosphatase family 19 298 1.3E-61 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 SJPD1_0275 5c3132acab907622559f6d2baab9660d 488 Gene3D G3DSA:1.10.3210.10 311 482 3.3E-19 T 13-10-2018 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 Gene3D G3DSA:2.30.170.50 1 66 1.5E-31 T 13-10-2018 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 SUPERFAMILY SSF143800 1 64 1.41E-25 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 66 29.411 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 3.1E-31 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.1E-23 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 PRINTS PR01249 Ribosomal protein L31 signature 45 63 5.1E-23 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 PRINTS PR01249 Ribosomal protein L31 signature 30 45 5.1E-23 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 Pfam PF01197 Ribosomal protein L31 1 63 1.6E-31 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0196 5cadd79c3fbae5a43836755877454646 66 ProSitePatterns PS01143 Ribosomal protein L31 signature. 34 55 - T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2664 e9c40fcf84c7543ea32b366a6e25282a 73 Pfam PF02597 ThiS family 20 73 6.4E-9 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 SJPD1_2664 e9c40fcf84c7543ea32b366a6e25282a 73 Gene3D G3DSA:3.10.20.30 1 73 1.3E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_2664 e9c40fcf84c7543ea32b366a6e25282a 73 SUPERFAMILY SSF54285 3 73 5.05E-10 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp SJPD1_0169 3e1b890f972cc2bb7697851f70b11a09 577 SUPERFAMILY SSF52540 311 565 6.46E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0169 3e1b890f972cc2bb7697851f70b11a09 577 Gene3D G3DSA:3.40.50.300 288 512 1.0E-42 T 13-10-2018 SJPD1_0169 3e1b890f972cc2bb7697851f70b11a09 577 SMART SM00382 355 494 9.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0169 3e1b890f972cc2bb7697851f70b11a09 577 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 359 491 1.2E-29 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Gene3D G3DSA:3.30.450.20 226 345 1.9E-24 T 13-10-2018 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Pfam PF08448 PAS fold 429 538 6.2E-9 T 13-10-2018 IPR013656 PAS fold-4 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SUPERFAMILY SSF55073 560 717 1.8E-48 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SMART SM00052 726 972 1.5E-100 T 13-10-2018 IPR001633 EAL domain SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Gene3D G3DSA:3.30.70.270 552 728 7.6E-57 T 13-10-2018 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Pfam PF00990 Diguanylate cyclase, GGDEF domain 555 711 1.0E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 421 544 4.4E-6 T 13-10-2018 IPR000014 PAS domain SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Gene3D G3DSA:3.30.450.20 415 551 6.6E-17 T 13-10-2018 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SUPERFAMILY SSF55785 420 523 3.32E-9 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SMART SM01049 74 159 4.6E-5 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Gene3D G3DSA:3.30.450.20 73 225 1.7E-31 T 13-10-2018 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SUPERFAMILY SSF141868 731 977 5.1E-83 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Gene3D G3DSA:3.20.20.450 729 979 3.4E-91 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Pfam PF00563 EAL domain 732 967 9.1E-68 T 13-10-2018 IPR001633 EAL domain SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SMART SM00267 544 716 1.1E-59 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 Pfam PF08269 Cache domain 40 325 4.9E-67 T 13-10-2018 IPR004010 Double Cache domain 2 SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 551 713 9.5E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1326 63993ba291595293eb8efdb8e22c6b5a 981 SMART SM00091 422 489 0.0016 T 13-10-2018 IPR000014 PAS domain SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 4 331 36.848 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 Gene3D G3DSA:3.40.50.720 8 326 1.2E-106 T 13-10-2018 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 171 307 2.1E-14 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 SMART SM00859 5 141 4.5E-44 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 Gene3D G3DSA:3.30.360.10 148 309 1.2E-106 T 13-10-2018 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 SUPERFAMILY SSF55347 149 305 6.21E-42 T 13-10-2018 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 SUPERFAMILY SSF51735 3 166 9.72E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 5 337 1.2E-106 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 141 3.2E-29 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SJPD1_0234 c39aac98fd940c10e0399e2f6291c22e 337 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 144 160 - T 13-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 ProSitePatterns PS00893 Nudix box signature. 178 199 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 Gene3D G3DSA:3.90.79.10 145 271 1.3E-42 T 13-10-2018 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 SUPERFAMILY SSF55811 97 256 7.99E-44 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 PRINTS PR00502 NUDIX hydrolase family signature 187 202 3.4E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 PRINTS PR00502 NUDIX hydrolase family signature 173 187 3.4E-5 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 Pfam PF00293 NUDIX domain 148 258 3.6E-21 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 SJPD1_1902 ff7a3541984266ff1c1b4d784cae1f95 271 Gene3D G3DSA:3.90.79.20 18 144 2.3E-16 T 13-10-2018 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 37 170 6.2E-22 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 Gene3D G3DSA:1.10.340.30 24 135 2.2E-62 T 13-10-2018 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 TIGRFAM TIGR01083 nth: endonuclease III 9 196 2.4E-66 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 Gene3D G3DSA:1.10.1670.10 18 205 2.2E-62 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 189 205 - T 13-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 SMART SM00478 41 187 4.1E-44 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 PIRSF PIRSF001435 1 212 2.8E-41 T 13-10-2018 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 Hamap MF_00942 Endonuclease III [nth]. 1 211 32.379 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 SMART SM00525 188 208 0.0015 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 189 205 6.6E-4 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 SJPD1_1702 4df77f3a114e6a8e6f2480a684b0e0e4 213 SUPERFAMILY SSF48150 9 208 7.57E-59 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 SUPERFAMILY SSF52540 2 438 4.27E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 SMART SM00382 48 330 2.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 333 403 1.5E-7 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 Gene3D G3DSA:1.10.8.60 333 438 1.1E-36 T 13-10-2018 SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 3 441 5.9E-191 T 13-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 SMART SM01086 333 429 4.8E-23 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 Pfam PF07724 AAA domain (Cdc48 subfamily) 51 114 1.4E-6 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_1474 cbae95283a54560933449dca6f78aeda 441 Pfam PF07724 AAA domain (Cdc48 subfamily) 198 326 2.5E-37 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_0231 32f355ab1816bab25dc42c59433b9586 261 SUPERFAMILY SSF64167 3 260 1.57E-78 T 13-10-2018 SJPD1_0231 32f355ab1816bab25dc42c59433b9586 261 Gene3D G3DSA:3.40.1210.10 1 261 6.1E-87 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 SJPD1_0231 32f355ab1816bab25dc42c59433b9586 261 Pfam PF01975 Survival protein SurE 4 196 9.0E-59 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 SJPD1_0231 32f355ab1816bab25dc42c59433b9586 261 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 3 248 1.4E-69 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 SJPD1_0231 32f355ab1816bab25dc42c59433b9586 261 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 2 261 36.806 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 SJPD1_1371 06cad21873dd6e99f6fd4d9c041ba080 66 SUPERFAMILY SSF101498 22 60 2.62E-8 T 13-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily SJPD1_1371 06cad21873dd6e99f6fd4d9c041ba080 66 Pfam PF04316 Anti-sigma-28 factor, FlgM 34 59 1.6E-8 T 13-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal SJPD1_0638 d59f7902f75c3abdfd4a85bed9865369 205 Pfam PF13114 RecO N terminal 1 72 8.1E-33 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 PIRSF PIRSF000412 1 410 1.6E-163 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 Pfam PF00464 Serine hydroxymethyltransferase 4 379 2.9E-175 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 217 233 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 SUPERFAMILY SSF53383 2 411 2.78E-176 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 3 411 51.077 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 Gene3D G3DSA:3.40.640.10 33 283 8.5E-178 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_0691 b12d44f44fb4a2fd59587187ce8c7c96 415 Gene3D G3DSA:3.90.1150.10 6 389 8.5E-178 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2842 c1c31463837303bdf7067597f3a97195 159 Gene3D G3DSA:3.30.70.640 1 159 2.7E-59 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2842 c1c31463837303bdf7067597f3a97195 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 3 151 2.3E-51 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2842 c1c31463837303bdf7067597f3a97195 159 Pfam PF01967 MoaC family 14 149 1.9E-49 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2842 c1c31463837303bdf7067597f3a97195 159 SUPERFAMILY SSF55040 11 154 1.31E-54 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2842 c1c31463837303bdf7067597f3a97195 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 1 157 33.559 T 13-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 SUPERFAMILY SSF47384 324 397 9.22E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 SUPERFAMILY SSF55874 397 549 1.11E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 Gene3D G3DSA:1.10.287.130 261 393 5.4E-5 T 13-10-2018 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 441 548 3.4E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 529 3.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 535 548 3.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 494 3.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 508 3.7E-14 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 Gene3D G3DSA:3.30.565.10 399 551 1.5E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0457 d115d94f4d8708633ed1fd59c2519609 559 SMART SM00387 439 551 9.2E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1064 8a391bc056c1df914f9ced85798c167b 318 Pfam PF01548 Transposase 6 136 1.7E-14 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 SJPD1_1064 8a391bc056c1df914f9ced85798c167b 318 Pfam PF02371 Transposase IS116/IS110/IS902 family 201 282 1.3E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 SJPD1_0753 8a391bc056c1df914f9ced85798c167b 318 Pfam PF01548 Transposase 6 136 1.7E-14 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 SJPD1_0753 8a391bc056c1df914f9ced85798c167b 318 Pfam PF02371 Transposase IS116/IS110/IS902 family 201 282 1.3E-15 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 Hamap MF_00300 Chorismate synthase [aroC]. 10 351 36.324 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 SUPERFAMILY SSF103263 4 350 3.01E-137 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 TIGRFAM TIGR00033 aroC: chorismate synthase 10 347 2.7E-124 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 Gene3D G3DSA:3.60.150.10 3 360 2.0E-150 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 ProSitePatterns PS00789 Chorismate synthase signature 3. 318 334 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 13-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 Pfam PF01264 Chorismate synthase 10 344 8.7E-134 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_2445 127c231142b5da655e9545b0dde4c28c 360 PIRSF PIRSF001456 3 360 6.1E-135 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 SJPD1_1426 b79b87852fbdc4fe3be0093ff2e46a41 277 SUPERFAMILY SSF52518 14 224 2.64E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1426 b79b87852fbdc4fe3be0093ff2e46a41 277 Gene3D G3DSA:3.40.50.970 26 203 3.0E-25 T 13-10-2018 SJPD1_1426 b79b87852fbdc4fe3be0093ff2e46a41 277 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 51 198 2.8E-33 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 SUPERFAMILY SSF69737 70 140 4.45E-10 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 Pfam PF05194 UreE urease accessory protein, C-terminal domain 71 142 4.9E-9 T 13-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 Gene3D G3DSA:3.30.70.790 70 144 5.9E-10 T 13-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 SUPERFAMILY SSF69287 9 65 1.44E-6 T 13-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 SMART SM00988 1 63 1.2E-4 T 13-10-2018 IPR004029 UreE urease accessory, N-terminal SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 PIRSF PIRSF036402 1 144 4.0E-18 T 13-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 SJPD1_2506 0a598055a3c46a77d2dc091bc3fcf364 144 Gene3D G3DSA:2.60.260.20 1 66 3.4E-5 T 13-10-2018 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SMART SM00487 13 207 8.2E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Gene3D G3DSA:1.10.10.10 397 518 2.9E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Gene3D G3DSA:3.40.50.300 201 396 1.3E-53 T 13-10-2018 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Pfam PF00270 DEAD/DEAH box helicase 19 179 1.0E-19 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Pfam PF16124 RecQ zinc-binding 335 395 5.5E-11 T 13-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SMART SM00956 404 505 8.4E-32 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Pfam PF00271 Helicase conserved C-terminal domain 221 322 2.3E-16 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 592 5.2E-207 T 13-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SUPERFAMILY SSF47819 526 592 8.5E-24 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SMART SM00341 521 595 5.2E-17 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 7 457 1.9E-155 T 13-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SUPERFAMILY SSF52540 58 341 2.89E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Pfam PF09382 RQC domain 400 507 1.5E-27 T 13-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SUPERFAMILY SSF46785 397 514 7.21E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Pfam PF00570 HRDC domain 525 590 4.2E-23 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Gene3D G3DSA:3.40.50.300 2 198 1.4E-73 T 13-10-2018 SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 SMART SM00490 242 323 3.3E-27 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1916 54f3e334936a0ae932aee27d545ee980 595 Gene3D G3DSA:1.10.150.80 521 595 1.5E-25 T 13-10-2018 SJPD1_2203 bb82907c4f952b626dc3ed67c405ebcc 227 SUPERFAMILY SSF51366 2 225 1.21E-55 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_2203 bb82907c4f952b626dc3ed67c405ebcc 227 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 1 222 1.3E-40 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2203 bb82907c4f952b626dc3ed67c405ebcc 227 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 3 223 9.7E-60 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2203 bb82907c4f952b626dc3ed67c405ebcc 227 Gene3D G3DSA:3.20.20.70 1 227 4.0E-68 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2203 bb82907c4f952b626dc3ed67c405ebcc 227 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 56 69 - T 13-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2203 bb82907c4f952b626dc3ed67c405ebcc 227 SMART SM00934 2 223 2.2E-70 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 73 98 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 Hamap MF_01576 Bifunctional protein FolD [folD]. 1 280 38.284 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 SUPERFAMILY SSF53223 1 119 8.15E-38 T 13-10-2018 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 3 118 2.8E-39 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 257 265 - T 13-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 SUPERFAMILY SSF51735 120 277 3.7E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 107 128 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 152 172 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 201 230 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 236 252 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 253 271 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 31 53 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 72 99 2.7E-82 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 Gene3D G3DSA:3.40.50.10860 6 274 1.6E-112 T 13-10-2018 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 Gene3D G3DSA:3.40.50.720 4 256 1.6E-112 T 13-10-2018 SJPD1_1135 887b634fded4e498900fdd3fe7ac2fb4 280 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 121 279 1.4E-69 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 SJPD1_0652 970f18ec6fa0ec171498b767d00870f9 335 SUPERFAMILY SSF52540 6 156 2.25E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0652 970f18ec6fa0ec171498b767d00870f9 335 Pfam PF07728 AAA domain (dynein-related subfamily) 24 118 7.8E-7 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 SJPD1_0652 970f18ec6fa0ec171498b767d00870f9 335 Gene3D G3DSA:3.40.50.300 5 162 6.7E-23 T 13-10-2018 SJPD1_1353 f38806076511538ed4cb46a3898ad47f 315 Pfam PF08349 Protein of unknown function (DUF1722) 186 302 5.2E-34 T 13-10-2018 IPR013560 Domain of unknown function DUF1722 SJPD1_1353 f38806076511538ed4cb46a3898ad47f 315 Pfam PF04463 Protein of unknown function (DUF523) 4 143 1.3E-32 T 13-10-2018 IPR007553 Domain of unknown function DUF523 SJPD1_2342 10df3b7fa2b23b26910b7dff29675df5 487 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 151 1.9E-12 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SJPD1_2342 10df3b7fa2b23b26910b7dff29675df5 487 SUPERFAMILY SSF51905 189 398 8.38E-5 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_2342 10df3b7fa2b23b26910b7dff29675df5 487 SUPERFAMILY SSF51905 2 196 4.54E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_2342 10df3b7fa2b23b26910b7dff29675df5 487 Gene3D G3DSA:3.50.50.100 1 444 5.1E-103 T 13-10-2018 SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 Pfam PF04542 Sigma-70 region 2 1 68 4.0E-6 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 Gene3D G3DSA:1.10.10.10 94 158 4.1E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 Pfam PF08281 Sigma-70, region 4 100 150 7.1E-15 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 Gene3D G3DSA:1.10.1740.10 1 93 2.5E-5 T 13-10-2018 SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 1 154 1.8E-23 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 SUPERFAMILY SSF88659 74 156 1.09E-17 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like SJPD1_1965 282322129f03f046f2fc2b9fcff7fa86 159 SUPERFAMILY SSF88946 1 84 2.47E-9 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 SJPD1_2406 a5b45ce3578e26c675d82b64a9fcb71a 286 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 208 220 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site SJPD1_2406 a5b45ce3578e26c675d82b64a9fcb71a 286 Pfam PF00348 Polyprenyl synthetase 27 250 2.8E-49 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 SJPD1_2406 a5b45ce3578e26c675d82b64a9fcb71a 286 Gene3D G3DSA:1.10.600.10 3 286 1.6E-89 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily SJPD1_2406 a5b45ce3578e26c675d82b64a9fcb71a 286 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 78 94 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site SJPD1_2406 a5b45ce3578e26c675d82b64a9fcb71a 286 SUPERFAMILY SSF48576 19 261 2.3E-69 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily SJPD1_1417 ea76e457a8cdd9e8bc88ad481cb6cdbb 213 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 43 183 1.5E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_1417 ea76e457a8cdd9e8bc88ad481cb6cdbb 213 Gene3D G3DSA:3.40.50.1000 9 192 1.2E-46 T 13-10-2018 IPR023214 HAD superfamily SJPD1_1417 ea76e457a8cdd9e8bc88ad481cb6cdbb 213 SUPERFAMILY SSF56784 7 210 1.73E-48 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_1417 ea76e457a8cdd9e8bc88ad481cb6cdbb 213 Gene3D G3DSA:1.10.150.240 21 85 1.2E-46 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 SJPD1_1417 ea76e457a8cdd9e8bc88ad481cb6cdbb 213 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 184 8.1E-37 T 13-10-2018 SJPD1_1417 ea76e457a8cdd9e8bc88ad481cb6cdbb 213 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 89 179 4.5E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 Gene3D G3DSA:3.40.50.880 152 376 1.2E-56 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 SUPERFAMILY SSF52317 189 374 1.1E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 SMART SM01097 4 134 1.3E-66 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00097 Anthranilate synthase component II signature 267 278 3.4E-5 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00097 Anthranilate synthase component II signature 239 248 3.4E-5 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00097 Anthranilate synthase component II signature 351 364 3.4E-5 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 236 250 6.2E-30 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 6.2E-30 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 267 283 6.2E-30 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 309 320 6.2E-30 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 284 301 6.2E-30 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 Gene3D G3DSA:3.50.30.20 4 149 2.5E-45 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 7 129 2.3E-43 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 Pfam PF00117 Glutamine amidotransferase class-I 196 373 4.3E-37 T 13-10-2018 IPR017926 Glutamine amidotransferase SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 8 374 9.4E-128 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 4 376 41.052 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00096 Glutamine amidotransferase superfamily signature 239 248 2.8E-10 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00096 Glutamine amidotransferase superfamily signature 351 364 2.8E-10 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 PRINTS PR00096 Glutamine amidotransferase superfamily signature 267 278 2.8E-10 T 13-10-2018 SJPD1_2395 6998a1f0422958db75ae87b27fee9b60 376 SUPERFAMILY SSF52021 5 148 4.58E-48 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 Pfam PF07695 7TM diverse intracellular signalling 169 366 5.7E-13 T 13-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 554 1.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 608 1.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 558 568 1.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 589 1.6E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 SUPERFAMILY SSF47384 389 459 1.02E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 Gene3D G3DSA:1.10.287.130 378 463 7.7E-11 T 13-10-2018 SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 SUPERFAMILY SSF55874 461 608 1.83E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 Gene3D G3DSA:3.30.565.10 464 608 3.9E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 506 608 8.4E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1511 c207fadff22aa2f98b82a9e4e7da7117 608 SMART SM00387 503 608 8.0E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1415 81bd7c5e4b2dd693bff5ccb15ec36050 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 20.515 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_1415 81bd7c5e4b2dd693bff5ccb15ec36050 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site SJPD1_1415 81bd7c5e4b2dd693bff5ccb15ec36050 113 PIRSF PIRSF004761 1 113 1.2E-34 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_1415 81bd7c5e4b2dd693bff5ccb15ec36050 113 Gene3D G3DSA:3.30.2320.80 1 113 2.5E-34 T 13-10-2018 SJPD1_1415 81bd7c5e4b2dd693bff5ccb15ec36050 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 3.9E-31 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_1415 81bd7c5e4b2dd693bff5ccb15ec36050 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 4.6E-29 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 SMART SM00382 30 218 3.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 SUPERFAMILY SSF52540 1 240 7.98E-84 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 SMART SM00930 258 333 2.9E-24 T 13-10-2018 IPR018449 NIL domain SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 SUPERFAMILY SSF55021 251 333 2.75E-20 T 13-10-2018 SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 Gene3D G3DSA:3.40.50.300 1 232 2.4E-73 T 13-10-2018 SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 Gene3D G3DSA:3.30.70.260 233 334 2.5E-24 T 13-10-2018 SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 Pfam PF00005 ABC transporter 22 169 3.4E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0393 54e92b00f92b7a1f3b3031d51d8c1ae3 335 Pfam PF09383 NIL domain 260 332 5.9E-21 T 13-10-2018 IPR018449 NIL domain SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 Pfam PF02743 Cache domain 68 305 2.1E-18 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 SMART SM00471 418 732 6.2E-8 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 Gene3D G3DSA:1.10.3210.10 628 772 8.8E-29 T 13-10-2018 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 Gene3D G3DSA:1.10.3210.10 397 512 7.0E-20 T 13-10-2018 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 SUPERFAMILY SSF109604 648 761 4.71E-10 T 13-10-2018 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 SUPERFAMILY SSF103190 129 223 3.77E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 Gene3D G3DSA:3.30.450.20 214 318 6.2E-22 T 13-10-2018 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 Gene3D G3DSA:3.30.450.20 132 213 6.2E-22 T 13-10-2018 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 Pfam PF13487 HD domain 649 714 2.5E-21 T 13-10-2018 SJPD1_1790 4e5d5b0abd1e2c374dde579a4e7cd4e4 790 SUPERFAMILY SSF109604 413 515 2.58E-9 T 13-10-2018 SJPD1_1258 8292e21cb924a7f0e7c736362cb5be63 256 Pfam PF00905 Penicillin binding protein transpeptidase domain 55 230 5.2E-33 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 SJPD1_1258 8292e21cb924a7f0e7c736362cb5be63 256 SUPERFAMILY SSF56601 29 229 6.52E-34 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like SJPD1_1258 8292e21cb924a7f0e7c736362cb5be63 256 Gene3D G3DSA:3.40.710.10 5 256 4.6E-88 T 13-10-2018 SJPD1_1258 8292e21cb924a7f0e7c736362cb5be63 256 ProSitePatterns PS00337 Beta-lactamase class-D active site. 59 69 - T 13-10-2018 IPR002137 Beta-lactamase, class-D active site GO:0008800|GO:0017001 KEGG: 00311+3.5.2.6 SJPD1_0919 51eecb86849182a2d6d068f093d833c8 131 Pfam PF02566 OsmC-like protein 34 121 3.0E-11 T 13-10-2018 IPR003718 OsmC/Ohr family SJPD1_0919 51eecb86849182a2d6d068f093d833c8 131 Gene3D G3DSA:3.30.300.20 8 126 1.1E-12 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_0919 51eecb86849182a2d6d068f093d833c8 131 SUPERFAMILY SSF82784 11 123 4.06E-15 T 13-10-2018 IPR036102 OsmC/Ohr superfamily SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 SMART SM00342 28 110 4.9E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 Gene3D G3DSA:3.30.160.70 109 190 1.7E-12 T 13-10-2018 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 196 273 7.4E-25 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 193 272 3.8E-29 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 SUPERFAMILY SSF55729 284 407 6.78E-9 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 243 249 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 Gene3D G3DSA:3.40.630.30 280 413 1.7E-11 T 13-10-2018 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 Pfam PF12833 Helix-turn-helix domain 35 111 3.0E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 SUPERFAMILY SSF46767 192 273 1.44E-26 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 SUPERFAMILY SSF53155 117 180 1.96E-14 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 Gene3D G3DSA:1.10.10.10 191 274 1.6E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 SUPERFAMILY SSF46689 11 61 1.74E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1103 a577f31a0df6c56b5e7bdf1eeff58626 416 Gene3D G3DSA:1.10.10.60 11 108 4.7E-20 T 13-10-2018 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 Pfam PF01634 ATP phosphoribosyltransferase 47 199 1.4E-49 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 Gene3D G3DSA:3.40.190.10 3 193 2.9E-66 T 13-10-2018 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 138 159 - T 13-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 203 50.114 T 13-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 SUPERFAMILY SSF53850 1 202 1.3E-61 T 13-10-2018 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 179 2.1E-58 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 SJPD1_0702 b83674d4f48fbba483d3cf6ef5d401a2 207 Gene3D G3DSA:3.40.190.10 88 171 2.9E-66 T 13-10-2018 SJPD1_2825 3c4c42fa3c9622338b6d3f8a65c05da0 254 Pfam PF01148 Cytidylyltransferase family 11 251 3.5E-49 T 13-10-2018 SJPD1_2825 3c4c42fa3c9622338b6d3f8a65c05da0 254 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 211 237 - T 13-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Gene3D G3DSA:3.30.450.20 341 478 1.2E-18 T 13-10-2018 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SMART SM00267 591 759 1.8E-53 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SMART SM01079 75 267 1.6E-43 T 13-10-2018 IPR006189 CHASE domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 480 600 6.9E-24 T 13-10-2018 IPR000014 PAS domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 349 481 3.6E-12 T 13-10-2018 IPR000014 PAS domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 599 758 3.2E-49 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SUPERFAMILY SSF55073 607 757 6.43E-46 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Gene3D G3DSA:3.30.70.270 596 759 4.0E-53 T 13-10-2018 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Gene3D G3DSA:3.30.450.350 79 290 1.3E-25 T 13-10-2018 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Pfam PF08447 PAS fold 504 586 2.2E-17 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SUPERFAMILY SSF55785 490 592 2.58E-30 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Gene3D G3DSA:3.30.450.20 479 595 1.4E-31 T 13-10-2018 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SUPERFAMILY SSF55785 346 472 2.09E-15 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Pfam PF00989 PAS fold 354 457 3.9E-9 T 13-10-2018 IPR013767 PAS fold GO:0006355 SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SMART SM00086 431 474 4.4 T 13-10-2018 IPR001610 PAC motif SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SMART SM00086 553 595 6.0E-5 T 13-10-2018 IPR001610 PAC motif SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Pfam PF03924 CHASE domain 78 262 8.4E-39 T 13-10-2018 IPR006189 CHASE domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SMART SM00091 479 547 2.3E-5 T 13-10-2018 IPR000014 PAS domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 SMART SM00091 352 422 2.3E-7 T 13-10-2018 IPR000014 PAS domain SJPD1_0503 de58e67b01be12aef8a6a849ab664fcb 772 Pfam PF00990 Diguanylate cyclase, GGDEF domain 603 755 5.0E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 SUPERFAMILY SSF55073 38 175 1.02E-18 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 Gene3D G3DSA:3.20.20.450 191 433 1.6E-62 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 Gene3D G3DSA:3.30.70.270 19 180 8.9E-21 T 13-10-2018 SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 SMART SM00052 193 433 1.3E-47 T 13-10-2018 IPR001633 EAL domain SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 SUPERFAMILY SSF141868 209 430 8.76E-62 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 33 173 9.3E-14 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 Pfam PF00990 Diguanylate cyclase, GGDEF domain 34 174 7.5E-15 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 Pfam PF00563 EAL domain 207 428 1.6E-55 T 13-10-2018 IPR001633 EAL domain SJPD1_0409 d73d34db099de47d669ee1e953dff289 434 SMART SM00267 22 181 3.1E-7 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1210 6638903a092f6b2070a7ec55752ef12d 483 Pfam PF07693 KAP family P-loop domain 34 272 1.2E-34 T 13-10-2018 IPR011646 KAP family P-loop domain SJPD1_1210 6638903a092f6b2070a7ec55752ef12d 483 SUPERFAMILY SSF52540 9 340 1.65E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1983 85a69246bda6c60b1d61238d9da63235 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 40 58 4.3E-7 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 SJPD1_1983 85a69246bda6c60b1d61238d9da63235 155 PRINTS PR00813 Bacterial general secretion pathway protein G signature 4 29 4.3E-7 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 SJPD1_1983 85a69246bda6c60b1d61238d9da63235 155 Gene3D G3DSA:3.30.700.10 5 152 4.4E-16 T 13-10-2018 SJPD1_1983 85a69246bda6c60b1d61238d9da63235 155 SUPERFAMILY SSF54523 5 107 2.04E-14 T 13-10-2018 SJPD1_1983 85a69246bda6c60b1d61238d9da63235 155 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 24 2.3E-4 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Gene3D G3DSA:3.30.310.50 361 456 2.7E-23 T 13-10-2018 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Gene3D G3DSA:3.40.120.10 173 248 2.6E-24 T 13-10-2018 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 256 358 1.4E-15 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 116 2.5E-26 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 SUPERFAMILY SSF53738 153 254 8.24E-24 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 SUPERFAMILY SSF53738 4 177 4.24E-31 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 367 447 7.8E-10 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Gene3D G3DSA:3.40.120.10 1 146 7.5E-41 T 13-10-2018 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 250 2.6E-18 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 13-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 SUPERFAMILY SSF53738 258 345 2.2E-19 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 2.3E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 2.3E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 2.3E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 204 217 2.3E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 Gene3D G3DSA:3.40.120.10 250 359 6.5E-23 T 13-10-2018 SJPD1_2241 81dffca0f23e1401e3b7a508c49303f6 456 SUPERFAMILY SSF55957 359 448 1.02E-18 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 Gene3D G3DSA:2.170.130.10 123 248 4.8E-19 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 Pfam PF00593 TonB dependent receptor 327 785 5.0E-31 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 Pfam PF07715 TonB-dependent Receptor Plug Domain 142 236 8.5E-10 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 Gene3D G3DSA:3.55.50.30 21 120 1.5E-21 T 13-10-2018 SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 769 786 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 SUPERFAMILY SSF56935 128 786 5.19E-96 T 13-10-2018 SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 144 786 1.2E-79 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 Pfam PF07660 Secretin and TonB N terminus short domain 50 98 8.4E-8 T 13-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 Gene3D G3DSA:2.40.170.20 261 786 7.5E-85 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_1967 e4710a4815a16149b9eb7f3dc977daec 786 SMART SM00965 50 100 1.4E-8 T 13-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 SUPERFAMILY SSF46894 133 218 1.79E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 218 7.1E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 Gene3D G3DSA:3.40.50.2300 1 130 4.1E-31 T 13-10-2018 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 Gene3D G3DSA:1.10.10.10 131 221 1.0E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 Pfam PF00072 Response regulator receiver domain 3 112 1.6E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 SMART SM00448 1 112 8.8E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 SMART SM00862 147 218 1.9E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0312 33205d0aa1194267d7f0dacfbe42f3e1 222 SUPERFAMILY SSF52172 1 124 1.42E-31 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1588 bd46833bb50b657f21b57cdde3a3d938 342 SUPERFAMILY SSF53850 30 256 7.95E-47 T 13-10-2018 SJPD1_1588 bd46833bb50b657f21b57cdde3a3d938 342 Gene3D G3DSA:3.40.190.10 125 230 5.1E-50 T 13-10-2018 SJPD1_1588 bd46833bb50b657f21b57cdde3a3d938 342 SMART SM00062 38 267 1.7E-50 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_1588 bd46833bb50b657f21b57cdde3a3d938 342 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 253 1.9E-29 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_1588 bd46833bb50b657f21b57cdde3a3d938 342 Gene3D G3DSA:3.40.190.10 33 244 5.1E-50 T 13-10-2018 SJPD1_1588 bd46833bb50b657f21b57cdde3a3d938 342 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site SJPD1_0124 983c69e4f508a53376eaa809ad8e1304 166 Gene3D G3DSA:3.30.70.860 7 165 3.5E-49 T 13-10-2018 IPR035571 UPF0234-like, C-terminal SJPD1_0124 983c69e4f508a53376eaa809ad8e1304 166 Gene3D G3DSA:3.30.70.990 13 104 3.5E-49 T 13-10-2018 IPR035570 UPF0234, N-terminal SJPD1_0124 983c69e4f508a53376eaa809ad8e1304 166 SUPERFAMILY SSF89963 6 93 1.15E-22 T 13-10-2018 IPR036183 YajQ-like superfamily SJPD1_0124 983c69e4f508a53376eaa809ad8e1304 166 SUPERFAMILY SSF89963 95 166 2.88E-22 T 13-10-2018 IPR036183 YajQ-like superfamily SJPD1_0124 983c69e4f508a53376eaa809ad8e1304 166 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 5 166 21.27 T 13-10-2018 IPR007551 Protein of unknown function DUF520 SJPD1_0124 983c69e4f508a53376eaa809ad8e1304 166 Pfam PF04461 Protein of unknown function (DUF520) 6 166 1.7E-51 T 13-10-2018 IPR007551 Protein of unknown function DUF520 SJPD1_1302 6c86cc05736c163cfb6cc548c14e96e8 164 Gene3D G3DSA:3.30.460.80 7 121 5.7E-13 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1302 6c86cc05736c163cfb6cc548c14e96e8 164 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 38 131 4.4E-18 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1302 6c86cc05736c163cfb6cc548c14e96e8 164 SUPERFAMILY SSF143243 25 129 9.81E-23 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1302 6c86cc05736c163cfb6cc548c14e96e8 164 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 88 126 5.0E-12 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 59 72 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 SUPERFAMILY SSF54211 86 175 1.43E-26 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 2 190 34.696 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 Gene3D G3DSA:3.30.230.40 88 190 1.2E-32 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 153 165 - T 13-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 29 171 2.5E-56 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 Gene3D G3DSA:3.30.230.40 1 87 9.2E-31 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 SJPD1_0813 a083dfaba8ecdc56923d1703d5e95522 190 SUPERFAMILY SSF54211 3 80 6.2E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 SUPERFAMILY SSF55785 46 147 3.59E-10 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 294 399 5.9E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 Pfam PF13426 PAS domain 44 138 3.3E-8 T 13-10-2018 IPR000014 PAS domain SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 SMART SM00387 289 403 4.5E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 Gene3D G3DSA:3.30.450.20 29 137 1.7E-12 T 13-10-2018 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 SUPERFAMILY SSF47384 173 248 3.14E-10 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 381 1.9E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 360 1.9E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 400 1.9E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 PRINTS PR00344 Bacterial sensor protein C-terminal signature 332 346 1.9E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 31 146 6.7E-11 T 13-10-2018 IPR000014 PAS domain SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 Gene3D G3DSA:1.10.287.130 164 247 6.0E-12 T 13-10-2018 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 SMART SM00388 179 249 1.4E-4 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 SUPERFAMILY SSF55874 244 399 1.7E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1231 0150344b8079a08b7445869a6c53e6a7 404 Gene3D G3DSA:3.30.565.10 248 401 4.1E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0666 d621b4b07124240e304699008876b850 131 Pfam PF07883 Cupin domain 40 106 8.9E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel SJPD1_0666 d621b4b07124240e304699008876b850 131 SUPERFAMILY SSF51182 32 121 1.15E-20 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_0666 d621b4b07124240e304699008876b850 131 Gene3D G3DSA:2.60.120.10 13 120 1.3E-29 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_1947 a51dc6b5d7dd06db274f9b60421f9714 266 SUPERFAMILY SSF81345 3 259 5.1E-37 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_1947 a51dc6b5d7dd06db274f9b60421f9714 266 Gene3D G3DSA:1.10.3470.10 59 266 4.4E-8 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_1947 a51dc6b5d7dd06db274f9b60421f9714 266 Pfam PF00950 ABC 3 transport family 5 261 2.0E-70 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 SJPD1_1160 c620c2ce0356a36f694409031dcfcb32 79 Pfam PF03776 Septum formation topological specificity factor MinE 14 77 5.0E-18 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 SJPD1_1160 c620c2ce0356a36f694409031dcfcb32 79 Gene3D G3DSA:3.30.1070.10 1 79 1.1E-26 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 SJPD1_1160 c620c2ce0356a36f694409031dcfcb32 79 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 79 14.566 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 SJPD1_1160 c620c2ce0356a36f694409031dcfcb32 79 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 77 1.0E-24 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 SJPD1_1160 c620c2ce0356a36f694409031dcfcb32 79 SUPERFAMILY SSF55229 32 77 2.09E-7 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 SUPERFAMILY SSF54534 82 157 8.24E-21 T 13-10-2018 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 9.9E-26 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 6 155 3.4E-51 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 156 27.444 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 Gene3D G3DSA:3.10.50.30 78 158 9.1E-24 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 Pfam PF03449 Transcription elongation factor, N-terminal 6 75 3.3E-25 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 PIRSF PIRSF006092 1 159 8.9E-46 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 Gene3D G3DSA:1.10.287.180 3 76 1.3E-25 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 SJPD1_0233 a0de7c7683e203cffc244ea71207787f 164 SUPERFAMILY SSF46557 5 79 5.89E-23 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SUPERFAMILY SSF49265 320 407 3.12E-7 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 Gene3D G3DSA:2.60.40.10 316 409 1.7E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SMART SM00060 224 302 11.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SMART SM00060 128 210 25.0 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SMART SM00060 26 105 6.2 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SMART SM00060 314 394 1.4 T 13-10-2018 IPR003961 Fibronectin type III GO:0005515 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 Gene3D G3DSA:2.60.40.10 225 315 2.0E-17 T 13-10-2018 IPR013783 Immunoglobulin-like fold SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SUPERFAMILY SSF49265 143 302 5.96E-13 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 SJPD1_0790 ae166753951082791e3efdb4598cb303 410 Gene3D G3DSA:2.60.40.10 31 121 2.1E-9 T 13-10-2018 IPR013783 Immunoglobulin-like fold SJPD1_0790 ae166753951082791e3efdb4598cb303 410 Gene3D G3DSA:2.60.40.10 141 224 3.0E-8 T 13-10-2018 IPR013783 Immunoglobulin-like fold SJPD1_0790 ae166753951082791e3efdb4598cb303 410 SUPERFAMILY SSF49265 36 116 2.62E-8 T 13-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 SMART SM00382 336 457 1.7E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 76 173 1.3E-20 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 SUPERFAMILY SSF160246 76 169 7.06E-15 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 Gene3D G3DSA:3.30.450.90 176 308 3.6E-42 T 13-10-2018 SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 SUPERFAMILY SSF52540 200 580 1.61E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 403 417 - T 13-10-2018 IPR001482 Type II/IV secretion system protein SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 Gene3D G3DSA:3.40.50.300 309 583 1.0E-109 T 13-10-2018 SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 Pfam PF00437 Type II/IV secretion system protein 216 475 1.1E-81 T 13-10-2018 IPR001482 Type II/IV secretion system protein SJPD1_1466 94aaef21917fa9e07fc0144f7f05023f 583 SUPERFAMILY SSF160246 6 76 2.35E-5 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 SUPERFAMILY SSF52172 1 117 2.42E-26 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 212 6.4E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 Gene3D G3DSA:3.40.50.2300 1 120 2.1E-29 T 13-10-2018 SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 SMART SM00448 1 111 8.7E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 Gene3D G3DSA:1.10.10.10 130 216 1.5E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 SMART SM00862 142 212 1.2E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 Pfam PF00072 Response regulator receiver domain 3 111 7.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1648 6d8715131df7f904ce59c9dca9682b80 216 SUPERFAMILY SSF46894 140 212 7.37E-14 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 PIRSF PIRSF005814 33 733 1.1E-96 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 Gene3D G3DSA:3.30.1370.110 648 733 2.0E-20 T 13-10-2018 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 1 733 18.737 T 13-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 SMART SM00463 656 733 1.3E-6 T 13-10-2018 IPR002625 Smr domain SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 SUPERFAMILY SSF160443 657 732 4.71E-11 T 13-10-2018 IPR036063 Smr domain superfamily SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 Pfam PF00488 MutS domain V 305 482 1.2E-16 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 SUPERFAMILY SSF52540 274 488 2.56E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 Pfam PF01713 Smr domain 659 733 5.1E-17 T 13-10-2018 IPR002625 Smr domain SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 SMART SM00533 2 292 5.3E-6 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 Gene3D G3DSA:3.40.50.300 270 596 2.0E-39 T 13-10-2018 SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 SUPERFAMILY SSF48334 50 265 1.96E-5 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily SJPD1_0601 4bd6f7bb553cecd657bd940ab9816696 733 SMART SM00534 301 485 7.4E-29 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SJPD1_2769 652299e5512924a2b79ce39b32e3bdcd 76 Pfam PF13192 Thioredoxin domain 1 75 8.7E-26 T 13-10-2018 IPR012336 Thioredoxin-like fold SJPD1_2769 652299e5512924a2b79ce39b32e3bdcd 76 PIRSF PIRSF037031 1 76 9.2E-32 T 13-10-2018 IPR005243 Redox-active disulphide protein 2 SJPD1_2769 652299e5512924a2b79ce39b32e3bdcd 76 Gene3D G3DSA:3.40.30.10 1 75 5.9E-28 T 13-10-2018 SJPD1_2769 652299e5512924a2b79ce39b32e3bdcd 76 TIGRFAM TIGR00412 redox_disulf_2: redox-active disulfide protein 2 1 74 1.1E-23 T 13-10-2018 IPR005243 Redox-active disulphide protein 2 SJPD1_2769 652299e5512924a2b79ce39b32e3bdcd 76 SUPERFAMILY SSF52833 1 75 5.93E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 SUPERFAMILY SSF51690 101 270 3.22E-52 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 PIRSF PIRSF006250 1 273 3.8E-82 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 SUPERFAMILY SSF54675 2 100 1.11E-25 T 13-10-2018 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 14 99 2.3E-23 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 101 269 5.9E-56 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 Gene3D G3DSA:3.20.20.70 115 260 3.2E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 6 270 2.3E-89 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 SJPD1_0283 c313e9dc076d09478aafc615a4a66054 276 Gene3D G3DSA:3.90.1170.20 8 266 3.2E-93 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 SUPERFAMILY SSF52540 2 242 6.87E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 SUPERFAMILY SSF52540 302 522 7.03E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 Pfam PF00005 ABC transporter 338 468 3.1E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 Pfam PF00005 ABC transporter 18 186 3.0E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 Pfam PF12848 ABC transporter 226 309 1.4E-18 T 13-10-2018 IPR032781 ABC-transporter extension domain SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 SMART SM00382 346 512 9.4E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 SMART SM00382 26 231 1.7E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 Gene3D G3DSA:3.40.50.300 286 530 2.0E-52 T 13-10-2018 SJPD1_2142 e355f11cf342bd19a0d9234c5e3f6e0c 531 Gene3D G3DSA:3.40.50.300 2 285 3.2E-56 T 13-10-2018 SJPD1_2046 f9b0b1af8102422c263f3aaf147864eb 421 Pfam PF01136 Peptidase family U32 79 307 3.2E-83 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 SJPD1_2046 f9b0b1af8102422c263f3aaf147864eb 421 ProSitePatterns PS01276 Peptidase family U32 signature. 163 181 - T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Pfam PF00009 Elongation factor Tu GTP binding domain 3 181 2.9E-55 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Gene3D G3DSA:3.40.50.300 1 185 2.0E-72 T 13-10-2018 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 PRINTS PR00315 GTP-binding elongation factor signature 50 58 3.2E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.2E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 3.2E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 PRINTS PR00315 GTP-binding elongation factor signature 7 20 3.2E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 3.2E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 SUPERFAMILY SSF50447 166 289 1.49E-31 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Gene3D G3DSA:3.30.70.3380 369 480 1.0E-40 T 13-10-2018 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 SUPERFAMILY SSF52540 2 205 1.07E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 TIGRFAM TIGR01393 lepA: elongation factor 4 3 597 2.1E-295 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 173 3.0E-20 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Pfam PF06421 GTP-binding protein LepA C-terminus 489 595 1.6E-46 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 SUPERFAMILY SSF54980 400 495 7.67E-23 T 13-10-2018 IPR035647 EF-G domain III/V-like SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 284.525 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Gene3D G3DSA:3.30.70.870 287 368 1.4E-34 T 13-10-2018 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Gene3D G3DSA:3.30.70.2570 481 555 1.3E-30 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Gene3D G3DSA:2.40.30.10 186 286 3.1E-27 T 13-10-2018 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 SUPERFAMILY SSF54980 295 371 1.26E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 43 58 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Pfam PF03144 Elongation factor Tu domain 2 205 276 1.0E-12 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 SJPD1_0358 29e8e1176c1e9efc5e5dc1f67d327cfe 597 Pfam PF00679 Elongation factor G C-terminus 400 485 9.1E-22 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like SJPD1_2432 f060efe082a820825f574d42b816322f 237 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.6E-40 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2432 f060efe082a820825f574d42b816322f 237 SUPERFAMILY SSF54821 108 206 2.35E-40 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2432 f060efe082a820825f574d42b816322f 237 Gene3D G3DSA:3.30.1140.32 108 208 4.2E-43 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2432 f060efe082a820825f574d42b816322f 237 SUPERFAMILY SSF54814 2 105 9.53E-36 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 SJPD1_2432 f060efe082a820825f574d42b816322f 237 SMART SM00322 60 125 1.0E-5 T 13-10-2018 IPR004087 K Homology domain GO:0003676 SJPD1_2432 f060efe082a820825f574d42b816322f 237 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 6.7E-94 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 SJPD1_2432 f060efe082a820825f574d42b816322f 237 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 38.58 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 SJPD1_2432 f060efe082a820825f574d42b816322f 237 Pfam PF07650 KH domain 38 109 2.3E-19 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2432 f060efe082a820825f574d42b816322f 237 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 13-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2432 f060efe082a820825f574d42b816322f 237 Gene3D G3DSA:3.30.300.20 17 106 3.5E-27 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 SUPERFAMILY SSF81799 109 205 5.23E-24 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 4 301 1.4E-97 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 Pfam PF01795 MraW methylase family 3 302 8.9E-102 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 Gene3D G3DSA:3.40.50.150 5 301 1.8E-85 T 13-10-2018 SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 5 303 32.405 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 Gene3D G3DSA:1.10.150.170 108 207 1.8E-85 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 SUPERFAMILY SSF53335 4 301 5.73E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1793 7282ff9a0771a791854256c0daaa8ae1 305 PIRSF PIRSF004486 1 304 1.4E-97 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 SJPD1_2132 566db72302421e6aa6fccb5947fe4510 609 SMART SM00267 422 595 2.1E-49 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2132 566db72302421e6aa6fccb5947fe4510 609 Pfam PF00990 Diguanylate cyclase, GGDEF domain 434 590 1.4E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2132 566db72302421e6aa6fccb5947fe4510 609 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 430 593 1.0E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2132 566db72302421e6aa6fccb5947fe4510 609 SUPERFAMILY SSF55073 438 597 2.67E-46 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2132 566db72302421e6aa6fccb5947fe4510 609 Gene3D G3DSA:3.30.70.270 427 596 2.5E-51 T 13-10-2018 SJPD1_2018 1c88eda7508de41cb1803dcc28c1ce4e 75 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 63 4.3E-23 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 SJPD1_2018 1c88eda7508de41cb1803dcc28c1ce4e 75 Pfam PF02599 Global regulator protein family 1 53 1.4E-19 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 SJPD1_2018 1c88eda7508de41cb1803dcc28c1ce4e 75 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 47 1.0E-10 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 SJPD1_2018 1c88eda7508de41cb1803dcc28c1ce4e 75 Gene3D G3DSA:3.30.70.1680 1 63 6.3E-22 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 SJPD1_2018 1c88eda7508de41cb1803dcc28c1ce4e 75 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 70 16.553 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 SJPD1_2018 1c88eda7508de41cb1803dcc28c1ce4e 75 SUPERFAMILY SSF117130 1 54 3.4E-16 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Gene3D G3DSA:3.40.50.300 571 716 2.7E-17 T 13-10-2018 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Gene3D G3DSA:3.40.50.300 403 511 2.6E-9 T 13-10-2018 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 SUPERFAMILY SSF52980 757 896 2.95E-8 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Pfam PF13361 UvrD-like helicase C-terminal domain 593 701 3.7E-10 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Pfam PF13361 UvrD-like helicase C-terminal domain 402 520 5.6E-9 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Gene3D G3DSA:3.40.50.300 199 397 8.5E-22 T 13-10-2018 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 SUPERFAMILY SSF52540 5 705 1.37E-79 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Pfam PF00580 UvrD/REP helicase N-terminal domain 5 395 9.5E-44 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 SJPD1_2382 534b80d5e85a34eff6e2a636af3a8b73 907 Gene3D G3DSA:3.90.320.10 726 902 1.6E-6 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 Gene3D G3DSA:1.10.10.10 130 222 8.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 SUPERFAMILY SSF52172 3 174 1.85E-37 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 SMART SM00862 149 220 1.3E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 SMART SM00448 4 115 1.3E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 220 2.1E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 Pfam PF00072 Response regulator receiver domain 6 115 3.5E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2754 b9e52d32b6ed8d801acc5deec95c73ea 223 Gene3D G3DSA:3.40.50.2300 2 129 3.9E-34 T 13-10-2018 SJPD1_0395 ec377bf8a241f7318641ea53f7abd64c 494 Pfam PF01384 Phosphate transporter family 33 481 7.8E-76 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 3.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 3.5E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 Gene3D G3DSA:1.10.357.10 1 191 1.6E-35 T 13-10-2018 SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 Pfam PF16925 Bacterial transcriptional repressor C-terminal 96 185 2.2E-8 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 1.8E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 SUPERFAMILY SSF48498 96 187 4.45E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily SJPD1_0661 815bcca68bfaa4745c7064fc97d8a67f 194 SUPERFAMILY SSF46689 3 66 3.03E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 Gene3D G3DSA:2.30.42.10 287 358 2.8E-10 T 13-10-2018 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 SMART SM00228 181 249 0.17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 SMART SM00228 283 349 1.7E-5 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 SUPERFAMILY SSF50156 286 357 4.21E-11 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 SUPERFAMILY SSF50156 169 255 8.41E-9 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 290 331 1.1E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 Gene3D G3DSA:2.30.42.10 181 272 1.6E-8 T 13-10-2018 SJPD1_2407 07d15119240007d7e61ac0c60715e8a0 358 Pfam PF13180 PDZ domain 181 249 1.2E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Gene3D G3DSA:3.30.470.20 187 324 3.7E-51 T 13-10-2018 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 420 4.4E-147 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 326 417 1.2E-18 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 420 39.102 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 SMART SM01209 99 291 2.5E-123 T 13-10-2018 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Gene3D G3DSA:3.40.50.20 1 91 6.5E-27 T 13-10-2018 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 99 291 1.4E-75 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 285 292 - T 13-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 SUPERFAMILY SSF56059 100 318 5.48E-58 T 13-10-2018 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 SMART SM01210 325 420 1.6E-34 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 98 1.5E-29 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 SUPERFAMILY SSF51246 323 420 3.53E-24 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Gene3D G3DSA:3.90.600.10 325 424 1.3E-23 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 SUPERFAMILY SSF52440 1 99 2.59E-28 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_0714 28bad0a5f20b3012815f5c92e7e0fef1 424 Gene3D G3DSA:3.30.1490.20 117 186 7.6E-25 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 271 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 5 427 100.319 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 5 426 3.4E-188 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 Pfam PF00202 Aminotransferase class-III 34 416 6.1E-76 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 Gene3D G3DSA:3.90.1150.10 9 419 4.0E-166 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 Gene3D G3DSA:3.40.640.10 71 318 4.0E-166 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1137 1a9ac8e9877126c2c462a7de75ff56d6 428 SUPERFAMILY SSF53383 2 426 1.36E-124 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2464 0a13ccb7115be788f763df438c5b4d26 128 Gene3D G3DSA:3.40.50.2300 2 126 5.6E-26 T 13-10-2018 SJPD1_2464 0a13ccb7115be788f763df438c5b4d26 128 SMART SM00448 3 122 4.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2464 0a13ccb7115be788f763df438c5b4d26 128 Pfam PF00072 Response regulator receiver domain 5 122 1.5E-19 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2464 0a13ccb7115be788f763df438c5b4d26 128 SUPERFAMILY SSF52172 3 127 5.98E-25 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1872 2598aa95fd97117c4d286af10a64e0a2 645 Pfam PF00884 Sulfatase 172 461 3.2E-22 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 SJPD1_1872 2598aa95fd97117c4d286af10a64e0a2 645 SUPERFAMILY SSF53649 172 473 6.11E-31 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 SJPD1_1872 2598aa95fd97117c4d286af10a64e0a2 645 Gene3D G3DSA:3.40.720.10 165 463 1.7E-43 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:2.40.50.150 847 966 9.4E-37 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:3.90.1100.10 362 660 1.2E-68 T 13-10-2018 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF00562 RNA polymerase Rpb2, domain 6 736 1296 9.3E-145 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1094 1106 - T 13-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:3.90.1100.10 664 730 4.6E-18 T 13-10-2018 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:3.90.1100.10 18 159 2.3E-50 T 13-10-2018 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1375 11.544 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:2.40.50.100 731 806 6.6E-22 T 13-10-2018 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 SUPERFAMILY SSF64484 12 1375 0.0 T 13-10-2018 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:3.90.1110.10 160 252 8.9E-24 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF10385 RNA polymerase beta subunit external 1 domain 608 673 5.8E-18 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:2.40.270.10 1068 1275 1.2E-73 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF04560 RNA polymerase Rpb2, domain 7 1299 1374 6.0E-24 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:3.90.1800.10 1285 1358 7.0E-10 T 13-10-2018 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF04561 RNA polymerase Rpb2, domain 2 155 228 2.8E-12 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF04561 RNA polymerase Rpb2, domain 2 374 469 3.8E-17 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF04563 RNA polymerase beta subunit 27 517 6.3E-21 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Pfam PF04565 RNA polymerase Rpb2, domain 3 530 598 1.8E-31 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 Gene3D G3DSA:2.40.270.10 807 846 1.1E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0440 7e06f0a999a3bc16093f161b54a580af 1385 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 10 1372 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 Pfam PF00271 Helicase conserved C-terminal domain 228 333 2.2E-26 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 Pfam PF03880 DbpA RNA binding domain 383 452 2.2E-22 T 13-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 SMART SM00487 19 217 6.6E-59 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 SMART SM00490 253 334 6.7E-27 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 Gene3D G3DSA:3.40.50.300 208 379 4.8E-45 T 13-10-2018 SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 148 156 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 Pfam PF00270 DEAD/DEAH box helicase 24 190 4.4E-48 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 Gene3D G3DSA:3.40.50.300 1 205 2.2E-72 T 13-10-2018 SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 Gene3D G3DSA:3.30.70.330 382 455 4.2E-21 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily SJPD1_0912 81532b24e194f0d4b7595871f7bcd948 456 SUPERFAMILY SSF52540 70 351 3.36E-70 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 Gene3D G3DSA:3.20.20.140 1 264 2.2E-86 T 13-10-2018 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 128 138 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 256 1.4E-78 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 Pfam PF01026 TatD related DNase 3 256 2.8E-71 T 13-10-2018 IPR001130 TatD family GO:0016788 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 192 208 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 PIRSF PIRSF005902 1 260 6.5E-76 T 13-10-2018 IPR001130 TatD family GO:0016788 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 13-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 SJPD1_0810 3ff3e5b2f87cd5c20ce17db318c8725f 266 SUPERFAMILY SSF51556 2 256 6.06E-79 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_0177 8dc8971bdf4a32dfa5e030f39e9d8826 330 Pfam PF00146 NADH dehydrogenase 14 325 5.3E-107 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0177 8dc8971bdf4a32dfa5e030f39e9d8826 330 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 6 330 22.457 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0177 8dc8971bdf4a32dfa5e030f39e9d8826 330 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 52 67 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 TIGRFAM TIGR01763 MalateDH_bact: malate dehydrogenase, NAD-dependent 5 308 3.1E-113 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 PIRSF PIRSF000102 2 315 2.6E-103 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 SUPERFAMILY SSF51735 6 146 8.56E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 Gene3D G3DSA:3.90.110.10 148 311 2.6E-50 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 PRINTS PR00086 L-lactate dehydrogenase signature 6 30 3.5E-24 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 PRINTS PR00086 L-lactate dehydrogenase signature 31 55 3.5E-24 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 PRINTS PR00086 L-lactate dehydrogenase signature 143 161 3.5E-24 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 PRINTS PR00086 L-lactate dehydrogenase signature 119 139 3.5E-24 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 PRINTS PR00086 L-lactate dehydrogenase signature 173 186 3.5E-24 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 SUPERFAMILY SSF56327 146 304 8.36E-47 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 Hamap MF_00487 Malate dehydrogenase [mdh]. 5 309 42.049 T 13-10-2018 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 Gene3D G3DSA:3.40.50.720 2 147 6.0E-51 T 13-10-2018 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 6 145 7.9E-41 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_1421 2ffded8b9a8e4490732d23c8c4a29a2d 317 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 150 301 6.3E-26 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 336 345 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 463 54.896 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 Gene3D G3DSA:3.40.50.300 78 347 3.8E-112 T 13-10-2018 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 Gene3D G3DSA:2.40.10.170 1 77 3.8E-27 T 13-10-2018 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 SUPERFAMILY SSF47917 348 464 7.32E-52 T 13-10-2018 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 Gene3D G3DSA:1.10.1140.10 348 465 7.9E-57 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 2 463 5.0E-253 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 5 75 4.7E-18 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 SUPERFAMILY SSF52540 79 350 2.34E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 SMART SM00382 144 322 1.6E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 SUPERFAMILY SSF50615 2 77 7.32E-22 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0625 37f7de8a15a4fc1173a5b4030e49fa94 465 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 345 3.0E-64 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_1263 30033d420ccb8e49fe2686337f700055 167 Gene3D G3DSA:3.30.2010.10 70 161 1.2E-7 T 13-10-2018 SJPD1_1263 30033d420ccb8e49fe2686337f700055 167 Pfam PF01863 Protein of unknown function DUF45 93 149 2.8E-11 T 13-10-2018 IPR002725 Protein of unknown function DUF45 SJPD1_0159 021b864439400c08c77325966bb91243 267 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 258 3.3E-61 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0159 021b864439400c08c77325966bb91243 267 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 60 73 - T 13-10-2018 IPR018313 Solute-binding protein family 3, conserved site SJPD1_0159 021b864439400c08c77325966bb91243 267 SMART SM00062 37 260 1.6E-60 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0159 021b864439400c08c77325966bb91243 267 SUPERFAMILY SSF53850 2 259 1.31E-68 T 13-10-2018 SJPD1_0159 021b864439400c08c77325966bb91243 267 Gene3D G3DSA:3.40.190.10 38 257 1.6E-76 T 13-10-2018 SJPD1_0159 021b864439400c08c77325966bb91243 267 Gene3D G3DSA:3.40.190.10 122 219 1.6E-76 T 13-10-2018 SJPD1_0159 021b864439400c08c77325966bb91243 267 SMART SM00079 37 259 6.9E-6 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 SUPERFAMILY SSF160996 188 350 1.7E-35 T 13-10-2018 SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 Gene3D G3DSA:2.40.30.10 187 349 1.7E-126 T 13-10-2018 SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 SUPERFAMILY SSF51905 2 403 8.34E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 Gene3D G3DSA:3.50.50.60 6 398 1.7E-126 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 Pfam PF03486 HI0933-like protein 3 402 8.6E-122 T 13-10-2018 SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 4 402 3.1E-133 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 Gene3D G3DSA:1.10.8.260 268 332 1.7E-126 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 PRINTS PR00419 Adrenodoxin reductase family signature 26 39 7.5E-6 T 13-10-2018 SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 PRINTS PR00419 Adrenodoxin reductase family signature 3 25 7.5E-6 T 13-10-2018 SJPD1_0747 95a4103a7adbeed6c846e21c17734afa 404 PRINTS PR00419 Adrenodoxin reductase family signature 153 167 7.5E-6 T 13-10-2018 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 Pfam PF01227 GTP cyclohydrolase I 8 183 3.5E-76 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 Gene3D G3DSA:3.30.1130.10 55 187 4.7E-59 T 13-10-2018 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 64 80 - T 13-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 SUPERFAMILY SSF55620 4 184 1.04E-75 T 13-10-2018 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 Gene3D G3DSA:1.10.286.10 2 54 3.7E-20 T 13-10-2018 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 8 183 1.2E-73 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 SJPD1_2668 ed2f93882aa84f2806e575df7c29dfdd 191 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 3 184 39.603 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 SUPERFAMILY SSF47917 370 498 7.85E-47 T 13-10-2018 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 499 52.036 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 353 362 - T 13-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Gene3D G3DSA:3.40.50.300 92 369 6.2E-129 T 13-10-2018 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 499 2.3E-262 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 PIRSF PIRSF039088 1 501 2.2E-261 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 24 89 9.7E-17 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 362 6.6E-78 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 369 494 1.1E-47 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Gene3D G3DSA:2.40.30.20 1 90 1.8E-34 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 Gene3D G3DSA:1.20.150.20 370 501 2.0E-50 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 SUPERFAMILY SSF50615 8 91 1.83E-28 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0623 9938a52994834c427a509c210ba1559b 501 SUPERFAMILY SSF52540 94 368 6.84E-101 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 Gene3D G3DSA:1.10.357.10 58 200 2.5E-21 T 13-10-2018 SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 3.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 3.9E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 146 198 2.4E-10 T 13-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 SUPERFAMILY SSF46689 2 69 2.05E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 Gene3D G3DSA:1.10.10.60 2 57 4.3E-19 T 13-10-2018 SJPD1_1817 9d02ca9167f4395d6fbb44ec885a9c2b 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 9.4E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_2807 b40b05f9af4f9cf8b381250f546b54b2 239 Pfam PF11741 AMIN domain 155 238 2.3E-9 T 13-10-2018 IPR021731 AMIN domain SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 SUPERFAMILY SSF55174 2 208 4.45E-70 T 13-10-2018 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 5.8E-30 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 SMART SM00363 98 162 2.0E-19 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 Gene3D G3DSA:3.10.290.10 97 193 2.6E-80 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 Pfam PF01479 S4 domain 98 145 2.9E-20 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 SMART SM01390 3 97 4.9E-45 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 36.244 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 1.4E-82 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 Gene3D G3DSA:1.10.1050.10 6 208 2.6E-80 T 13-10-2018 SJPD1_2415 93561e31c869617c048e54f2f8598bba 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 13-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0022 2aba69fff884f8f82667e89afe5694fd 178 Gene3D G3DSA:1.20.1290.10 15 178 4.1E-27 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_0022 2aba69fff884f8f82667e89afe5694fd 178 SUPERFAMILY SSF69118 1 177 8.04E-37 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_2742 bdd13f86a2e45bbc2aa4cccad61fa55a 189 SUPERFAMILY SSF55729 1 158 1.08E-10 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2742 bdd13f86a2e45bbc2aa4cccad61fa55a 189 Gene3D G3DSA:3.40.630.30 1 187 3.5E-10 T 13-10-2018 SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 25 405 43.13 T 13-10-2018 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Pfam PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal 11 175 2.8E-69 T 13-10-2018 SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 300 332 1.8E-13 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 SUPERFAMILY SSF51161 133 350 5.54E-36 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Gene3D G3DSA:3.30.60.70 177 217 3.4E-18 T 13-10-2018 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily KEGG: 00300+2.3.1.117 SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 177 217 9.2E-13 T 13-10-2018 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Gene3D G3DSA:3.30.70.2010 6 176 4.9E-58 T 13-10-2018 SJPD1_2160 b6221aa280e08e21cd3ba42a0c9a7a83 405 Gene3D G3DSA:2.160.10.10 218 405 3.3E-60 T 13-10-2018 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 Gene3D G3DSA:3.40.47.10 257 403 1.3E-46 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 251 360 2.4E-30 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 SMART SM00825 Beta-ketoacyl synthase 4 403 3.0E-11 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 401 3.1E-172 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 SUPERFAMILY SSF53901 2 248 4.77E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 SUPERFAMILY SSF53901 211 402 2.46E-65 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 PIRSF PIRSF000447 1 403 2.5E-156 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 Gene3D G3DSA:3.40.47.10 1 252 4.1E-77 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2278 bc344b470a7bc4c9884875266cd214ea 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 243 3.6E-49 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 SUPERFAMILY SSF54631 276 392 1.29E-5 T 13-10-2018 SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 403 482 1.2E-11 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 Pfam PF00990 Diguanylate cyclase, GGDEF domain 404 526 1.3E-12 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 SUPERFAMILY SSF141868 15 237 2.75E-52 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 SUPERFAMILY SSF55073 405 526 1.73E-16 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 SMART SM00052 2 241 2.7E-11 T 13-10-2018 IPR001633 EAL domain SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 Gene3D G3DSA:3.20.20.450 3 251 7.1E-52 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 Gene3D G3DSA:3.30.70.270 391 538 1.6E-17 T 13-10-2018 SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 Pfam PF00563 EAL domain 15 236 9.8E-42 T 13-10-2018 IPR001633 EAL domain SJPD1_2303 585e33fa107b4a5dd3799c5bda9c4adc 591 SMART SM00267 389 535 6.7E-5 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 84 4.3E-5 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 1 246 22.296 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 Gene3D G3DSA:1.10.3730.10 147 247 6.5E-28 T 13-10-2018 SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 PIRSF PIRSF000193 1 248 4.0E-57 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 144 244 7.9E-31 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 244 3.7E-60 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 Gene3D G3DSA:3.40.50.720 1 146 1.3E-24 T 13-10-2018 SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 SUPERFAMILY SSF51735 1 141 5.96E-17 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2177 51f044742c78b3f67009c60606a757ca 248 SUPERFAMILY SSF48179 144 247 5.27E-26 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 SUPERFAMILY SSF54810 391 511 8.24E-49 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00096 Glutamine amidotransferase superfamily signature 165 178 3.5E-7 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 3.5E-7 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 3.5E-7 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 201 511 1.9E-147 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Pfam PF02540 NAD synthase 206 260 9.0E-7 T 13-10-2018 IPR022310 NAD/GMP synthase SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Pfam PF00958 GMP synthase C terminal domain 419 510 1.8E-42 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 SUPERFAMILY SSF52317 6 225 2.78E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Gene3D G3DSA:3.40.50.620 198 391 1.1E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00097 Anthranilate synthase component II signature 77 88 1.4E-5 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00097 Anthranilate synthase component II signature 165 178 1.4E-5 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00097 Anthranilate synthase component II signature 50 59 1.4E-5 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 6 193 3.6E-75 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 3 511 53.311 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Pfam PF00117 Glutamine amidotransferase class-I 8 186 1.3E-41 T 13-10-2018 IPR017926 Glutamine amidotransferase SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 77 93 1.6E-5 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 6 20 1.6E-5 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 47 61 1.6E-5 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Gene3D G3DSA:3.40.50.880 3 197 1.0E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 SUPERFAMILY SSF52402 182 432 3.31E-53 T 13-10-2018 SJPD1_0712 9aab1c3fb5e98a604187232140b259b1 511 Gene3D G3DSA:3.30.300.10 392 511 6.1E-51 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SUPERFAMILY SSF88723 3 166 1.91E-46 T 13-10-2018 IPR029060 PIN-like domain superfamily SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Gene3D G3DSA:1.10.150.20 672 811 1.1E-97 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 TIGRFAM TIGR00593 pola: DNA polymerase I 4 885 6.3E-270 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 167 256 1.1E-25 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Gene3D G3DSA:3.30.420.10 302 505 7.5E-57 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SMART SM00474 301 482 2.4E-25 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Pfam PF00476 DNA polymerase family A 519 883 9.6E-134 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 641 656 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 714 739 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 693 706 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 663 686 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 618 640 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 773 784 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 804 820 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 751 762 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 PRINTS PR00868 DNA-polymerase family A (pol I) signature 832 845 1.2E-68 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SMART SM00482 649 849 1.2E-80 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SMART SM00279 169 204 7.9E-11 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Gene3D G3DSA:1.20.1060.10 506 621 8.4E-37 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SUPERFAMILY SSF47807 167 277 2.84E-25 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SUPERFAMILY SSF53098 301 481 5.47E-38 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Gene3D G3DSA:3.40.50.1010 5 270 4.6E-83 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SMART SM00475 1 258 1.1E-96 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Gene3D G3DSA:1.10.150.20 170 243 4.6E-83 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Gene3D G3DSA:3.30.70.370 625 881 1.1E-97 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 166 5.3E-44 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 SUPERFAMILY SSF56672 489 884 4.11E-133 T 13-10-2018 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 ProSitePatterns PS00447 DNA polymerase family A signature. 714 733 - T 13-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0676 00f9262ab7f3dc3c0ddff36d5df6b0b4 885 Pfam PF01612 3'-5' exonuclease 307 481 1.7E-29 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 Gene3D G3DSA:3.30.160.270 377 435 2.8E-15 T 13-10-2018 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 SUPERFAMILY SSF89000 388 434 5.49E-8 T 13-10-2018 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 SUPERFAMILY SSF51569 22 328 3.66E-87 T 13-10-2018 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 Gene3D G3DSA:3.20.20.70 10 376 1.1E-134 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 Pfam PF00682 HMGL-like 32 309 1.9E-70 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 39 55 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_0917 9579b0310ac6625a8357bf40f56c532a 438 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 SUPERFAMILY SSF54211 77 146 8.09E-23 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 Pfam PF00333 Ribosomal protein S5, N-terminal domain 9 73 7.8E-29 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 147 31.35 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 7 146 3.7E-64 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 Pfam PF03719 Ribosomal protein S5, C-terminal domain 85 147 1.0E-25 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 ProSitePatterns PS00585 Ribosomal protein S5 signature. 26 58 - T 13-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 SUPERFAMILY SSF54768 5 74 5.55E-24 T 13-10-2018 SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 Gene3D G3DSA:3.30.230.10 72 147 4.2E-31 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_2422 9f7b62bac2ae216f2a9c5b1978909892 147 Gene3D G3DSA:3.30.160.20 1 71 1.5E-30 T 13-10-2018 SJPD1_0126 35ec2c18491cabf92cbc539c077c1bc3 529 Pfam PF08019 Domain of unknown function (DUF1705) 51 200 4.9E-47 T 13-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 SJPD1_0126 35ec2c18491cabf92cbc539c077c1bc3 529 SUPERFAMILY SSF53649 228 515 1.13E-17 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 SJPD1_0126 35ec2c18491cabf92cbc539c077c1bc3 529 Gene3D G3DSA:3.40.720.10 208 529 3.2E-85 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 SJPD1_0126 35ec2c18491cabf92cbc539c077c1bc3 529 Pfam PF00884 Sulfatase 227 512 8.0E-49 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 3.9E-32 T 13-10-2018 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 3.9E-32 T 13-10-2018 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 3.9E-32 T 13-10-2018 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 3.9E-32 T 13-10-2018 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 PIRSF PIRSF001553 1 290 1.3E-127 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 13-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 Gene3D G3DSA:3.40.50.720 1 123 3.9E-49 T 13-10-2018 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 13-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 Pfam PF02629 CoA binding domain 6 99 1.7E-28 T 13-10-2018 IPR003781 CoA-binding GO:0048037 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 SMART SM00881 4 100 5.3E-35 T 13-10-2018 IPR003781 CoA-binding GO:0048037 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 Pfam PF00549 CoA-ligase 151 270 6.7E-14 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 SUPERFAMILY SSF52210 123 288 1.57E-50 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 SUPERFAMILY SSF51735 1 122 1.23E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 42.193 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 1.3E-130 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1423 4d81419f84aa385665d3645395b27cc6 290 Gene3D G3DSA:3.40.50.261 124 289 1.4E-68 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_2346 f1cbfb6fbe5d92a36898aae988eb894b 257 Pfam PF00149 Calcineurin-like phosphoesterase 16 217 3.1E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 SJPD1_2346 f1cbfb6fbe5d92a36898aae988eb894b 257 Gene3D G3DSA:3.60.21.10 14 253 3.0E-21 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like SJPD1_2346 f1cbfb6fbe5d92a36898aae988eb894b 257 SUPERFAMILY SSF56300 16 254 4.11E-30 T 13-10-2018 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 SUPERFAMILY SSF51735 202 451 3.22E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 Gene3D G3DSA:1.10.285.10 391 453 2.4E-7 T 13-10-2018 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 4.8E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 377 388 4.8E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 4.8E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 4.8E-28 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 Gene3D G3DSA:3.40.50.10860 55 190 1.3E-158 T 13-10-2018 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 185 3.5E-48 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 451 3.5E-76 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 13-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 Gene3D G3DSA:3.40.50.720 209 378 1.3E-158 T 13-10-2018 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 PIRSF PIRSF000185 22 453 1.0E-104 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 Gene3D G3DSA:1.10.285.10 6 389 1.3E-158 T 13-10-2018 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 SUPERFAMILY SSF53223 6 196 1.09E-70 T 13-10-2018 SJPD1_2777 c569068857a7b91ed56ea2e7a6571f9a 453 SMART SM00839 204 451 4.9E-69 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 SJPD1_1418 4235aebbc699f0abf8ad355108b418f2 853 Pfam PF13116 Protein of unknown function 204 488 3.7E-40 T 13-10-2018 IPR025263 Domain of unknown function DUF3971 SJPD1_1418 4235aebbc699f0abf8ad355108b418f2 853 Pfam PF13109 AsmA-like C-terminal region 631 845 1.2E-61 T 13-10-2018 IPR039441 AsmA-like C-terminal region SJPD1_1356 d9d1d56f95d73bc3150c7bb15ea54fac 144 SUPERFAMILY SSF55021 5 71 2.29E-15 T 13-10-2018 SJPD1_1356 d9d1d56f95d73bc3150c7bb15ea54fac 144 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 8 76 0.004 T 13-10-2018 SJPD1_1356 d9d1d56f95d73bc3150c7bb15ea54fac 144 SUPERFAMILY SSF55021 74 140 2.57E-9 T 13-10-2018 SJPD1_1356 d9d1d56f95d73bc3150c7bb15ea54fac 144 Gene3D G3DSA:3.30.2130.10 2 144 1.7E-44 T 13-10-2018 SJPD1_1356 d9d1d56f95d73bc3150c7bb15ea54fac 144 Pfam PF01842 ACT domain 7 63 2.0E-8 T 13-10-2018 IPR002912 ACT domain SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 Gene3D G3DSA:1.10.150.130 106 182 6.5E-19 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 Gene3D G3DSA:1.10.443.10 210 402 7.5E-16 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 Gene3D G3DSA:3.30.160.390 5 105 2.5E-29 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 Pfam PF00589 Phage integrase family 215 375 8.6E-19 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 Pfam PF13356 Arm DNA-binding domain 6 90 5.2E-16 T 13-10-2018 IPR025166 Integrase, DNA-binding domain SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 102 151 1.0E-7 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 SJPD1_0374 dd516996e336c1e4bed4d758c7c12629 403 SUPERFAMILY SSF56349 102 388 1.24E-49 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 Pfam PF00682 HMGL-like 2 239 1.3E-64 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 SUPERFAMILY SSF51569 2 276 2.56E-69 T 13-10-2018 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 187 200 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 8 24 - T 13-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 TIGRFAM TIGR02660 nifV_homocitr: homocitrate synthase 2 364 3.0E-143 T 13-10-2018 IPR013477 Homocitrate synthase NifV-like GO:0046912|GO:0051188 KEGG: 00300+2.3.3.14|KEGG: 00620+2.3.3.14|MetaCyc: PWY-3081|MetaCyc: PWY-7710 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 Gene3D G3DSA:1.10.238.260 265 369 5.4E-25 T 13-10-2018 SJPD1_1226 baa5bdb269946906c4d375c3c7537c03 370 Gene3D G3DSA:3.20.20.70 1 264 3.8E-74 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:1.20.1640.10 512 1022 2.8E-300 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:3.30.70.1440 668 865 2.8E-300 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:1.20.1640.10 9 511 2.8E-300 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:3.30.2090.10 180 277 2.8E-300 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:3.30.70.1430 39 816 2.8E-300 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82714 721 805 2.35E-20 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.1E-89 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1027 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82866 804 1030 1.31E-44 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:3.30.70.1430 566 667 2.8E-300 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82693 138 332 3.66E-20 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82693 40 132 1.02E-22 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:3.30.70.1320 134 334 2.8E-300 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82866 299 500 2.62E-49 T 13-10-2018 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Gene3D G3DSA:3.30.2090.10 720 808 2.8E-300 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 Pfam PF00873 AcrB/AcrD/AcrF family 2 1025 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82714 184 274 1.16E-19 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1894 4b605cd7c1f73b70b589e97558cdd0ba 1043 SUPERFAMILY SSF82693 564 670 1.31E-19 T 13-10-2018 SJPD1_1637 93d668127e22623c36e094772cd74f80 248 Pfam PF00731 AIR carboxylase 121 243 1.1E-14 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 SJPD1_1637 93d668127e22623c36e094772cd74f80 248 SMART SM01001 119 248 1.8E-30 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 SJPD1_1637 93d668127e22623c36e094772cd74f80 248 SUPERFAMILY SSF52255 120 247 4.71E-28 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 SJPD1_1637 93d668127e22623c36e094772cd74f80 248 Gene3D G3DSA:3.40.50.7700 120 248 3.0E-33 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 3 314 1.7E-83 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 SUPERFAMILY SSF52440 1 127 2.69E-26 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 Gene3D G3DSA:3.30.470.20 123 302 8.1E-51 T 13-10-2018 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 1 327 27.573 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 Pfam PF01820 D-ala D-ala ligase N-terminus 3 117 3.5E-19 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 Gene3D G3DSA:3.30.1490.20 145 204 8.1E-51 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 SUPERFAMILY SSF56059 128 308 1.94E-31 T 13-10-2018 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 95 106 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 274 301 - T 13-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 Gene3D G3DSA:3.40.50.20 1 117 5.4E-29 T 13-10-2018 SJPD1_1455 424f82a58a3dcea9e344aecc77477268 344 Pfam PF07478 D-ala D-ala ligase C-terminus 137 302 4.1E-30 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_2028 1736e0800a61b7a72caac65f3768c25e 224 SUPERFAMILY SSF52540 1 197 5.32E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2028 1736e0800a61b7a72caac65f3768c25e 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 3 201 21.896 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 SJPD1_2028 1736e0800a61b7a72caac65f3768c25e 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 169 2.7E-36 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 SJPD1_2028 1736e0800a61b7a72caac65f3768c25e 224 Gene3D G3DSA:3.40.50.300 4 217 2.6E-53 T 13-10-2018 SJPD1_2028 1736e0800a61b7a72caac65f3768c25e 224 Pfam PF13500 AAA domain 6 167 1.5E-28 T 13-10-2018 SJPD1_2726 89ddd2abc2406415b64a2b1712b81cdc 326 SUPERFAMILY SSF111369 149 318 6.54E-9 T 13-10-2018 SJPD1_2726 89ddd2abc2406415b64a2b1712b81cdc 326 Gene3D G3DSA:1.10.287.470 75 204 1.1E-37 T 13-10-2018 SJPD1_2726 89ddd2abc2406415b64a2b1712b81cdc 326 Pfam PF13437 HlyD family secretion protein 204 315 3.3E-15 T 13-10-2018 SJPD1_2726 89ddd2abc2406415b64a2b1712b81cdc 326 Gene3D G3DSA:2.40.50.100 41 239 1.1E-37 T 13-10-2018 SJPD1_2726 89ddd2abc2406415b64a2b1712b81cdc 326 SUPERFAMILY SSF111369 42 118 9.81E-6 T 13-10-2018 SJPD1_2726 89ddd2abc2406415b64a2b1712b81cdc 326 Gene3D G3DSA:2.40.30.170 31 318 1.1E-37 T 13-10-2018 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 102 119 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 244 256 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 36 51 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 21 36 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 182 200 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 156 174 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 80 99 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 119 137 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 PRINTS PR01010 Flagellar P-ring protein signature 55 70 2.2E-73 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 Hamap MF_00416 Flagellar P-ring protein [flgI]. 1 350 34.168 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1369 9e15a204f786be8005b8a5e63a07f54d 350 Pfam PF02119 Flagellar P-ring protein 21 349 4.7E-113 T 13-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 SMART SM00388 209 267 3.8E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 SMART SM00387 309 410 6.5E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 314 397 7.8E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 Gene3D G3DSA:1.10.287.130 156 260 2.0E-19 T 13-10-2018 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 SMART SM00304 156 208 9.7E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 Gene3D G3DSA:3.30.565.10 272 405 1.8E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 SUPERFAMILY SSF47384 193 267 2.94E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 SUPERFAMILY SSF158472 159 205 8.76E-8 T 13-10-2018 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 Pfam PF00672 HAMP domain 159 203 7.0E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1747 1cc4d179e3bc9f111615d443ea54fb48 411 SUPERFAMILY SSF55874 272 399 1.44E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1383 c7876fe0132d9dd03fcc4d872d7cdbdd 365 SUPERFAMILY SSF51445 28 357 1.05E-51 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily SJPD1_1383 c7876fe0132d9dd03fcc4d872d7cdbdd 365 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 23 351 3.3E-55 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 SJPD1_1383 c7876fe0132d9dd03fcc4d872d7cdbdd 365 Gene3D G3DSA:3.20.20.300 16 362 1.7E-68 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 SUPERFAMILY SSF56719 34 489 3.66E-177 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 11 810 0.0 T 13-10-2018 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 712 760 3.9E-15 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 506 550 5.8E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 555 604 1.4E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 612 655 4.3E-12 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 764 809 6.8E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 661 707 7.2E-14 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Gene3D G3DSA:1.10.268.10 371 467 7.0E-206 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Gene3D G3DSA:3.90.199.10 36 488 7.0E-206 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Gene3D G3DSA:2.120.10.90 497 809 3.1E-119 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 35 473 1.1E-157 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 SMART SM00434 14 466 9.4E-283 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Gene3D G3DSA:3.30.1360.40 239 334 7.0E-206 T 13-10-2018 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 6 811 24.304 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SJPD1_0363 dbb881bb99372d780bc697de4945f3ab 842 SUPERFAMILY SSF101904 500 824 2.09E-105 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal SJPD1_0970 49580eb202ca401e262a27b988078208 372 SUPERFAMILY SSF56300 2 294 2.11E-42 T 13-10-2018 SJPD1_0970 49580eb202ca401e262a27b988078208 372 Gene3D G3DSA:3.60.21.10 1 260 4.0E-48 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like SJPD1_0970 49580eb202ca401e262a27b988078208 372 Pfam PF00149 Calcineurin-like phosphoesterase 2 201 8.4E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 SUPERFAMILY SSF52313 4 231 4.84E-94 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 Gene3D G3DSA:1.10.287.610 95 150 2.4E-89 T 13-10-2018 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 PRINTS PR00395 Ribosomal protein S2 signature 35 44 1.5E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 PRINTS PR00395 Ribosomal protein S2 signature 156 173 1.5E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 PRINTS PR00395 Ribosomal protein S2 signature 4 22 1.5E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 PRINTS PR00395 Ribosomal protein S2 signature 85 102 1.5E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 PRINTS PR00395 Ribosomal protein S2 signature 173 184 1.5E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 PRINTS PR00395 Ribosomal protein S2 signature 194 208 1.5E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 Pfam PF00318 Ribosomal protein S2 7 222 1.6E-94 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 Gene3D G3DSA:3.40.50.10490 8 213 2.4E-89 T 13-10-2018 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 4 15 - T 13-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 1 223 40.189 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0518 1c53ed60cc5e0860b474e146a3feec7d 263 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 1 223 1.1E-109 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 SMART SM00662 23 229 2.2E-56 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 254 318 2.0E-8 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 243 306 4.7E-23 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 155 4.6E-17 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 SUPERFAMILY SSF55257 10 227 5.89E-21 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 25 312 7.0E-88 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 SUPERFAMILY SSF56553 53 173 3.01E-29 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Gene3D G3DSA:3.30.1360.10 16 214 1.0E-68 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Gene3D G3DSA:2.170.120.12 53 172 1.0E-68 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 30 220 1.7E-12 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 SUPERFAMILY SSF47789 249 317 3.66E-20 T 13-10-2018 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 314 29.479 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_2414 b0e796b649a2b44927b9720b580f5b20 337 Gene3D G3DSA:1.10.150.20 216 337 1.7E-28 T 13-10-2018 SJPD1_0006 34d1e338107554fc0c01ea681d657057 403 Gene3D G3DSA:1.10.3210.10 188 397 2.1E-32 T 13-10-2018 SJPD1_0006 34d1e338107554fc0c01ea681d657057 403 Gene3D G3DSA:1.10.3210.10 5 187 4.6E-17 T 13-10-2018 SJPD1_0006 34d1e338107554fc0c01ea681d657057 403 SUPERFAMILY SSF109604 9 165 5.34E-5 T 13-10-2018 SJPD1_0006 34d1e338107554fc0c01ea681d657057 403 Pfam PF13023 HD domain 194 373 7.3E-39 T 13-10-2018 IPR006674 HD domain SJPD1_0006 34d1e338107554fc0c01ea681d657057 403 SUPERFAMILY SSF109604 180 384 1.33E-31 T 13-10-2018 SJPD1_0123 771095098e137d20ec024318cf39df15 310 SUPERFAMILY SSF52283 1 133 1.64E-27 T 13-10-2018 SJPD1_0123 771095098e137d20ec024318cf39df15 310 Gene3D G3DSA:3.40.50.720 96 285 4.2E-103 T 13-10-2018 SJPD1_0123 771095098e137d20ec024318cf39df15 310 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site SJPD1_0123 771095098e137d20ec024318cf39df15 310 SUPERFAMILY SSF51735 100 287 8.32E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0123 771095098e137d20ec024318cf39df15 310 Gene3D G3DSA:3.40.50.720 14 309 4.2E-103 T 13-10-2018 SJPD1_0123 771095098e137d20ec024318cf39df15 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 286 2.6E-52 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 SJPD1_0123 771095098e137d20ec024318cf39df15 310 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 18 309 1.6E-21 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 SJPD1_1238 7663f6e4f4655fe15d4c1460fc98adc0 526 Gene3D G3DSA:3.90.700.10 300 467 6.3E-113 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1238 7663f6e4f4655fe15d4c1460fc98adc0 526 Pfam PF00890 FAD binding domain 46 511 1.0E-70 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1238 7663f6e4f4655fe15d4c1460fc98adc0 526 SUPERFAMILY SSF56425 298 471 2.51E-25 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1238 7663f6e4f4655fe15d4c1460fc98adc0 526 TIGRFAM TIGR01813 flavo_cyto_c: flavocytochrome c 46 524 4.4E-127 T 13-10-2018 IPR010960 Flavocytochrome c GO:0000104|GO:0055114 SJPD1_1238 7663f6e4f4655fe15d4c1460fc98adc0 526 SUPERFAMILY SSF51905 33 526 1.44E-48 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1238 7663f6e4f4655fe15d4c1460fc98adc0 526 Gene3D G3DSA:3.50.50.60 45 525 6.3E-113 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1370 d2b4b006ce5413e24b6c38282bbba1af 102 ProDom PD351196 CJ1463 JHP0230 HP0245 24 100 2.0E-20 T 13-10-2018 SJPD1_1370 d2b4b006ce5413e24b6c38282bbba1af 102 Pfam PF10135 Rod binding protein 58 95 2.8E-6 T 13-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 Gene3D G3DSA:1.10.10.10 139 232 3.1E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 SUPERFAMILY SSF52172 10 177 2.99E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 Gene3D G3DSA:3.40.50.2300 11 136 1.1E-28 T 13-10-2018 SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 Pfam PF00072 Response regulator receiver domain 14 122 3.0E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 SMART SM00448 12 123 5.6E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 SMART SM00862 156 226 3.6E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 SUPERFAMILY SSF46894 155 226 4.93E-10 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_0902 e959df30258c06f4ceb9ee0fae685ce3 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 226 2.5E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0258 749d97c68d7d7c0c95d40308c5acaab0 138 Gene3D G3DSA:3.30.1490.190 82 138 1.1E-5 T 13-10-2018 SJPD1_0258 749d97c68d7d7c0c95d40308c5acaab0 138 Pfam PF01475 Ferric uptake regulator family 11 125 2.2E-28 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 SJPD1_0258 749d97c68d7d7c0c95d40308c5acaab0 138 SUPERFAMILY SSF46785 3 121 9.25E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0258 749d97c68d7d7c0c95d40308c5acaab0 138 Gene3D G3DSA:1.10.10.10 1 80 7.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 SUPERFAMILY SSF52172 1 131 1.15E-37 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 SUPERFAMILY SSF46894 125 224 2.83E-23 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 Gene3D G3DSA:3.40.50.2300 1 127 1.8E-34 T 13-10-2018 SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 SMART SM00448 2 112 8.5E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 224 6.8E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 Gene3D G3DSA:1.10.10.10 128 226 8.4E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 SMART SM00862 148 224 1.0E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1746 a6f02d2937fcb65645d4e381998ddbb7 226 Pfam PF00072 Response regulator receiver domain 4 112 1.1E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 154 2.1E-60 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 2.0E-47 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 2.0E-47 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 2.0E-47 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 2.0E-47 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 2.0E-47 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 153 1.0E-65 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 SUPERFAMILY SSF63411 4 162 3.3E-64 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 PIRSF PIRSF006160 1 162 1.4E-63 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 Gene3D G3DSA:3.30.1360.80 1 166 1.7E-65 T 13-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2356 374ef3fa77dd975c72ce07c16bbe7eca 166 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 34.098 T 13-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_2120 e9cf9e9c699f258ec9e7e53ddff4ec17 295 SUPERFAMILY SSF51621 4 235 6.28E-59 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 SJPD1_2120 e9cf9e9c699f258ec9e7e53ddff4ec17 295 PIRSF PIRSF015582 1 295 3.1E-75 T 13-10-2018 IPR011206 Citrate lyase beta subunit-like SJPD1_2120 e9cf9e9c699f258ec9e7e53ddff4ec17 295 Gene3D G3DSA:3.20.20.60 1 290 8.8E-92 T 13-10-2018 SJPD1_2120 e9cf9e9c699f258ec9e7e53ddff4ec17 295 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 7 225 1.5E-71 T 13-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 SJPD1_1337 2d93731d37954e8bb99e071523664d41 264 Gene3D G3DSA:3.30.1330.60 98 264 2.4E-41 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_1337 2d93731d37954e8bb99e071523664d41 264 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 52 3.1E-14 T 13-10-2018 IPR025713 Motility protein B, N-terminal domain SJPD1_1337 2d93731d37954e8bb99e071523664d41 264 Pfam PF00691 OmpA family 130 231 1.9E-18 T 13-10-2018 IPR006665 OmpA-like domain SJPD1_1337 2d93731d37954e8bb99e071523664d41 264 SUPERFAMILY SSF103088 117 237 1.24E-24 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 297 404 4.4E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 SUPERFAMILY SSF55874 253 403 1.27E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 Gene3D G3DSA:3.30.565.10 253 406 1.2E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 124 5.1E-23 T 13-10-2018 IPR000014 PAS domain SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 SMART SM00387 293 406 2.0E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 SMART SM00091 4 70 1.2E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 1.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 1.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 363 1.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 1.2E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 SMART SM00086 75 117 6.9E-7 T 13-10-2018 IPR001610 PAC motif SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 Gene3D G3DSA:1.10.287.130 171 250 1.7E-9 T 13-10-2018 SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 Pfam PF08447 PAS fold 26 110 4.4E-16 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 SUPERFAMILY SSF55785 12 114 2.44E-27 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2393 9dbd1ab550c156d6ffd87de8dd2324b7 407 Gene3D G3DSA:3.30.450.20 2 170 2.1E-33 T 13-10-2018 SJPD1_0173 9e2cf16d9f7d6b29f08636e296fd8cfa 408 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 136 408 1.5E-107 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0173 9e2cf16d9f7d6b29f08636e296fd8cfa 408 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 22 408 3.0E-181 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0173 9e2cf16d9f7d6b29f08636e296fd8cfa 408 Gene3D G3DSA:1.10.645.20 21 408 3.8E-153 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0173 9e2cf16d9f7d6b29f08636e296fd8cfa 408 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 17 408 45.802 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0173 9e2cf16d9f7d6b29f08636e296fd8cfa 408 SUPERFAMILY SSF56762 32 408 3.66E-119 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1305 735e3df094653d03428cfc3ef0cbce1a 187 SUPERFAMILY SSF109604 8 124 1.79E-14 T 13-10-2018 SJPD1_1305 735e3df094653d03428cfc3ef0cbce1a 187 TIGRFAM TIGR00277 HDIG: HDIG domain 19 86 2.4E-8 T 13-10-2018 IPR006675 HDIG domain SJPD1_1305 735e3df094653d03428cfc3ef0cbce1a 187 Pfam PF01966 HD domain 21 86 4.4E-5 T 13-10-2018 IPR006674 HD domain SJPD1_1305 735e3df094653d03428cfc3ef0cbce1a 187 Gene3D G3DSA:1.10.3210.10 2 172 9.0E-9 T 13-10-2018 SJPD1_1058 51dc4cd38d84d15d4c79e2eee26d2401 268 Gene3D G3DSA:3.40.50.150 3 165 5.3E-15 T 13-10-2018 SJPD1_1058 51dc4cd38d84d15d4c79e2eee26d2401 268 Pfam PF00145 C-5 cytosine-specific DNA methylase 6 103 2.5E-9 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_1058 51dc4cd38d84d15d4c79e2eee26d2401 268 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 50 62 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 SJPD1_1058 51dc4cd38d84d15d4c79e2eee26d2401 268 SUPERFAMILY SSF53335 4 212 4.71E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0759 51dc4cd38d84d15d4c79e2eee26d2401 268 Gene3D G3DSA:3.40.50.150 3 165 5.3E-15 T 13-10-2018 SJPD1_0759 51dc4cd38d84d15d4c79e2eee26d2401 268 Pfam PF00145 C-5 cytosine-specific DNA methylase 6 103 2.5E-9 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0759 51dc4cd38d84d15d4c79e2eee26d2401 268 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 50 62 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 SJPD1_0759 51dc4cd38d84d15d4c79e2eee26d2401 268 SUPERFAMILY SSF53335 4 212 4.71E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0687 429736103c794dd546c798dab55dacb2 263 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 259 28.476 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 SJPD1_0687 429736103c794dd546c798dab55dacb2 263 Gene3D G3DSA:3.40.50.10860 5 243 1.2E-73 T 13-10-2018 SJPD1_0687 429736103c794dd546c798dab55dacb2 263 SUPERFAMILY SSF53223 2 98 9.21E-29 T 13-10-2018 SJPD1_0687 429736103c794dd546c798dab55dacb2 263 Gene3D G3DSA:3.40.50.720 99 235 1.2E-73 T 13-10-2018 SJPD1_0687 429736103c794dd546c798dab55dacb2 263 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 3 258 1.2E-68 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 SJPD1_0687 429736103c794dd546c798dab55dacb2 263 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 86 3.4E-24 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 SJPD1_0687 429736103c794dd546c798dab55dacb2 263 SUPERFAMILY SSF51735 99 259 1.78E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2801 e1ad0c9052864ba76c6fa4024cc1434c 250 Pfam PF00977 Histidine biosynthesis protein 5 232 5.5E-65 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 SJPD1_2801 e1ad0c9052864ba76c6fa4024cc1434c 250 SUPERFAMILY SSF51366 1 248 3.22E-64 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_2801 e1ad0c9052864ba76c6fa4024cc1434c 250 Gene3D G3DSA:3.20.20.70 1 250 7.7E-89 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 Pfam PF00152 tRNA synthetases class II (D, K and N) 153 491 1.4E-80 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 5 493 1.3E-199 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 235 248 2.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 190 200 2.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 376 392 2.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 206 222 2.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 253 270 2.6E-37 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 SUPERFAMILY SSF55681 153 492 4.58E-115 T 13-10-2018 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 Gene3D G3DSA:3.30.930.10 149 506 9.5E-130 T 13-10-2018 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 Pfam PF01336 OB-fold nucleic acid binding domain 60 136 2.3E-14 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 SUPERFAMILY SSF50249 5 146 1.22E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 10 499 42.406 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 SJPD1_0692 935c01941087e5974d7e4ce34f5a7491 506 Gene3D G3DSA:2.40.50.140 2 148 2.2E-38 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SUPERFAMILY SSF52440 556 674 7.63E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SUPERFAMILY SSF56059 672 946 4.24E-102 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 126 332 3.6E-65 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 672 873 7.6E-37 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 837 844 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 295 302 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SMART SM00851 968 1054 2.4E-30 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Gene3D G3DSA:1.10.1030.10 400 506 2.6E-28 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Gene3D G3DSA:3.30.470.20 118 399 1.2E-116 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SUPERFAMILY SSF52440 1 125 7.63E-44 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SUPERFAMILY SSF56059 126 397 6.72E-102 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SMART SM01096 415 542 1.9E-59 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SUPERFAMILY SSF48108 392 543 2.09E-41 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1065 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Gene3D G3DSA:3.40.50.1380 949 1085 7.6E-37 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 166 178 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 202 221 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 376 394 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 237 254 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 295 324 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.9E-63 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Pfam PF02142 MGS-like domain 972 1054 1.1E-20 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Gene3D G3DSA:3.40.50.20 1 113 3.3E-46 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Gene3D G3DSA:3.40.50.20 520 661 8.7E-59 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Gene3D G3DSA:3.30.470.20 665 948 8.5E-116 T 13-10-2018 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 SUPERFAMILY SSF52335 950 1084 1.31E-33 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 708 722 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1075 12.8 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0226 48b22bc7cd8f726b3545ce73e3ca381c 1085 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 418 541 1.8E-36 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_0077 2f6c3f838c3361b0900b705ef7a32bdf 289 Gene3D G3DSA:3.90.550.10 6 289 1.0E-82 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0077 2f6c3f838c3361b0900b705ef7a32bdf 289 Pfam PF00483 Nucleotidyl transferase 23 283 3.7E-30 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 SJPD1_0077 2f6c3f838c3361b0900b705ef7a32bdf 289 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 16 280 1.8E-120 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 SJPD1_0077 2f6c3f838c3361b0900b705ef7a32bdf 289 SUPERFAMILY SSF53448 15 286 2.14E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0273 300a8a600d1ca8285e981929befadfe3 275 SUPERFAMILY SSF48179 167 274 1.25E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 SJPD1_0273 300a8a600d1ca8285e981929befadfe3 275 Gene3D G3DSA:3.40.50.720 2 164 1.2E-39 T 13-10-2018 SJPD1_0273 300a8a600d1ca8285e981929befadfe3 275 Gene3D G3DSA:1.10.3660.10 167 274 2.4E-34 T 13-10-2018 SJPD1_0273 300a8a600d1ca8285e981929befadfe3 275 SUPERFAMILY SSF51735 3 164 4.77E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0273 300a8a600d1ca8285e981929befadfe3 275 Pfam PF02153 Prephenate dehydrogenase 15 266 1.7E-73 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 2 134 22.953 T 13-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 Pfam PF05036 Sporulation related domain 153 223 4.2E-8 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 SUPERFAMILY SSF110997 154 215 5.75E-7 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 Gene3D G3DSA:2.40.40.10 42 135 3.7E-36 T 13-10-2018 IPR036908 RlpA-like domain superfamily SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 Pfam PF03330 Lytic transglycolase 43 129 3.0E-25 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 44 146 5.9E-50 T 13-10-2018 IPR012997 Rare lipoprotein A SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 Gene3D G3DSA:3.30.70.1070 148 222 1.3E-6 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 SJPD1_0812 4c0adfbd7705fd6ef0c7957dc5e63d72 227 SUPERFAMILY SSF50685 37 127 4.53E-12 T 13-10-2018 IPR036908 RlpA-like domain superfamily SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 Gene3D G3DSA:2.40.37.10 4 395 1.9E-144 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 355 368 6.5E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 63 75 6.5E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 256 275 6.5E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 43 61 6.5E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 176 189 6.5E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 22 266 1.4E-61 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 SUPERFAMILY SSF51419 12 268 4.22E-77 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 Gene3D G3DSA:3.20.20.10 20 261 1.9E-144 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 3 397 9.4E-159 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 1 398 41.635 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 SUPERFAMILY SSF50621 240 397 6.28E-54 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01181 Diaminopimelate decarboxylase signature 150 159 9.9E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01181 Diaminopimelate decarboxylase signature 61 78 9.9E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01181 Diaminopimelate decarboxylase signature 284 302 9.9E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 PRINTS PR01181 Diaminopimelate decarboxylase signature 365 387 9.9E-28 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 212 227 - T 13-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 15 355 5.6E-26 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 SJPD1_0251 860667a79fc268b4354e7d57aa9cbcb6 401 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 43 61 - T 13-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site SJPD1_0572 570589a74582b0a2425d8620a322a751 224 SMART SM00448 12 123 3.4E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0572 570589a74582b0a2425d8620a322a751 224 Gene3D G3DSA:3.40.50.2300 7 137 6.5E-32 T 13-10-2018 SJPD1_0572 570589a74582b0a2425d8620a322a751 224 Pfam PF00072 Response regulator receiver domain 14 123 3.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0572 570589a74582b0a2425d8620a322a751 224 Gene3D G3DSA:1.10.10.10 138 224 7.8E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0572 570589a74582b0a2425d8620a322a751 224 SMART SM00862 155 224 2.1E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0572 570589a74582b0a2425d8620a322a751 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 224 1.4E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0572 570589a74582b0a2425d8620a322a751 224 SUPERFAMILY SSF52172 12 183 4.27E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 Gene3D G3DSA:3.30.470.130 1 443 6.8E-186 T 13-10-2018 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 287 294 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 3 442 1.1E-200 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 SMART SM00878 336 441 2.0E-59 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 4.0E-39 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 SUPERFAMILY SSF51246 331 442 1.05E-42 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 2.5E-78 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 2.5E-41 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 SUPERFAMILY SSF56059 84 347 1.41E-66 T 13-10-2018 SJPD1_2782 3f0a223a79afc8b1ae92f3eb78d502cd 443 SUPERFAMILY SSF52440 2 114 1.58E-44 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 Pfam PF00550 Phosphopantetheine attachment site 6 71 2.7E-15 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 Gene3D G3DSA:1.10.1200.10 1 76 1.7E-28 T 13-10-2018 IPR036736 ACP-like superfamily SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 ProSitePatterns PS00012 Phosphopantetheine attachment site. 31 46 - T 13-10-2018 IPR006162 Phosphopantetheine attachment site SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 75 1.3E-33 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 SMART SM00823 Phosphopantetheine attachment site 4 62 0.0074 T 13-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 SUPERFAMILY SSF47336 3 75 1.31E-22 T 13-10-2018 IPR036736 ACP-like superfamily SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 33 73 2.0E-9 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 SJPD1_2279 dfd6fa499b7673cabb470ba5584b1528 76 Hamap MF_01217 Acyl carrier protein [acpP]. 2 76 21.916 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 SJPD1_2837 682704204a43b64e3146aa1566d0bdd9 376 Gene3D G3DSA:3.30.70.2050 324 376 1.3E-11 T 13-10-2018 SJPD1_2837 682704204a43b64e3146aa1566d0bdd9 376 Gene3D G3DSA:3.30.70.2050 107 169 2.4E-10 T 13-10-2018 SJPD1_2837 682704204a43b64e3146aa1566d0bdd9 376 SUPERFAMILY SSF160387 60 159 4.97E-29 T 13-10-2018 SJPD1_2837 682704204a43b64e3146aa1566d0bdd9 376 SUPERFAMILY SSF160387 271 373 2.01E-24 T 13-10-2018 SJPD1_2837 682704204a43b64e3146aa1566d0bdd9 376 Pfam PF05573 NosL 235 370 1.6E-30 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL SJPD1_2837 682704204a43b64e3146aa1566d0bdd9 376 Pfam PF05573 NosL 38 147 1.6E-21 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL SJPD1_1212 897140ad00279e48080edd2614007eb2 86 SUPERFAMILY SSF47413 6 64 3.66E-14 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_1212 897140ad00279e48080edd2614007eb2 86 SMART SM00530 9 65 7.4E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1212 897140ad00279e48080edd2614007eb2 86 Gene3D G3DSA:1.10.260.40 1 77 9.2E-16 T 13-10-2018 SJPD1_1212 897140ad00279e48080edd2614007eb2 86 Pfam PF01381 Helix-turn-helix 10 62 3.0E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0977 7f9b0255525bc4158a23fbfa0cf18a33 129 Pfam PF13359 DDE superfamily endonuclease 1 119 5.4E-15 T 13-10-2018 IPR027806 Harbinger transposase-derived nuclease domain SJPD1_1513 7f9b0255525bc4158a23fbfa0cf18a33 129 Pfam PF13359 DDE superfamily endonuclease 1 119 5.4E-15 T 13-10-2018 IPR027806 Harbinger transposase-derived nuclease domain SJPD1_1488 7f9b0255525bc4158a23fbfa0cf18a33 129 Pfam PF13359 DDE superfamily endonuclease 1 119 5.4E-15 T 13-10-2018 IPR027806 Harbinger transposase-derived nuclease domain SJPD1_0244 7f9b0255525bc4158a23fbfa0cf18a33 129 Pfam PF13359 DDE superfamily endonuclease 1 119 5.4E-15 T 13-10-2018 IPR027806 Harbinger transposase-derived nuclease domain SJPD1_1646 7f9b0255525bc4158a23fbfa0cf18a33 129 Pfam PF13359 DDE superfamily endonuclease 1 119 5.4E-15 T 13-10-2018 IPR027806 Harbinger transposase-derived nuclease domain SJPD1_1067 7f9b0255525bc4158a23fbfa0cf18a33 129 Pfam PF13359 DDE superfamily endonuclease 1 119 5.4E-15 T 13-10-2018 IPR027806 Harbinger transposase-derived nuclease domain SJPD1_0178 c1739fca54353f450c0ab67c50248e74 204 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 37 195 24.833 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0178 c1739fca54353f450c0ab67c50248e74 204 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 131 142 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0178 c1739fca54353f450c0ab67c50248e74 204 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 46 168 3.1E-39 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0178 c1739fca54353f450c0ab67c50248e74 204 SUPERFAMILY SSF54862 64 164 5.44E-21 T 13-10-2018 SJPD1_0178 c1739fca54353f450c0ab67c50248e74 204 Gene3D G3DSA:3.30.70.3270 64 199 2.4E-31 T 13-10-2018 SJPD1_0178 c1739fca54353f450c0ab67c50248e74 204 Pfam PF12838 4Fe-4S dicluster domain 91 143 3.0E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 Gene3D G3DSA:1.10.10.10 132 223 4.4E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 SMART SM00448 4 115 3.5E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 SMART SM00862 150 221 1.9E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 Pfam PF00072 Response regulator receiver domain 7 115 3.0E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 Gene3D G3DSA:3.40.50.2300 1 129 1.6E-31 T 13-10-2018 SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 SUPERFAMILY SSF52172 1 179 2.85E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0133 4c5703eec50ae79977f2d0c10622802e 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 221 1.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 SUPERFAMILY SSF53163 2 163 2.88E-39 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 PRINTS PR00446 Hydrogen uptake protein signature 15 26 7.9E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 PRINTS PR00446 Hydrogen uptake protein signature 38 55 7.9E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 PRINTS PR00446 Hydrogen uptake protein signature 3 15 7.9E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 PRINTS PR00446 Hydrogen uptake protein signature 59 69 7.9E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 PRINTS PR00446 Hydrogen uptake protein signature 71 87 7.9E-14 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 148 1.5E-34 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 Gene3D G3DSA:3.40.50.1450 1 164 3.1E-27 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily SJPD1_1406 be30333f4258a38b08d10afec0ce56f6 179 Pfam PF01750 Hydrogenase maturation protease 22 143 1.2E-26 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_2104 f5f5c3cc81a1d212f797c30595573ff4 257 Gene3D G3DSA:1.20.1290.10 18 253 1.5E-63 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_2104 f5f5c3cc81a1d212f797c30595573ff4 257 SUPERFAMILY SSF69118 14 252 1.15E-56 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_2104 f5f5c3cc81a1d212f797c30595573ff4 257 Pfam PF02627 Carboxymuconolactone decarboxylase family 27 110 5.3E-11 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_2104 f5f5c3cc81a1d212f797c30595573ff4 257 Pfam PF02627 Carboxymuconolactone decarboxylase family 165 246 3.1E-7 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_1515 a91ddebe8eac77f254e223e6acc3bfe7 164 SMART SM00448 5 116 4.9E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1515 a91ddebe8eac77f254e223e6acc3bfe7 164 Pfam PF00072 Response regulator receiver domain 7 116 1.2E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1515 a91ddebe8eac77f254e223e6acc3bfe7 164 SUPERFAMILY SSF52172 3 158 3.7E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1515 a91ddebe8eac77f254e223e6acc3bfe7 164 Gene3D G3DSA:3.40.50.2300 2 133 2.3E-32 T 13-10-2018 SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 Gene3D G3DSA:2.30.30.60 119 168 3.0E-18 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 133 167 - T 13-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 Pfam PF00924 Mechanosensitive ion channel 61 258 3.6E-55 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 Pfam PF05552 Conserved TM helix 11 54 1.8E-7 T 13-10-2018 IPR008910 Conserved TM helix SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 Gene3D G3DSA:3.30.70.100 170 262 1.4E-21 T 13-10-2018 SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 SUPERFAMILY SSF50182 104 169 1.9E-16 T 13-10-2018 IPR010920 LSM domain superfamily SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 SUPERFAMILY SSF82861 18 102 6.41E-19 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 SJPD1_2365 a066d772fd693766b1e7928f4f1471a6 266 SUPERFAMILY SSF82689 173 262 1.27E-23 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 SJPD1_0402 78b13ebe01f39ad17d0ad04fd502b384 142 Pfam PF14537 Cytochrome c3 51 131 5.2E-16 T 13-10-2018 IPR012286 Tetrahaem cytochrome domain KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 SJPD1_0402 78b13ebe01f39ad17d0ad04fd502b384 142 SUPERFAMILY SSF48695 57 136 1.36E-11 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_0402 78b13ebe01f39ad17d0ad04fd502b384 142 Gene3D G3DSA:1.10.1130.10 44 141 2.4E-17 T 13-10-2018 SJPD1_0041 bb985679fbbf27a3c7af2c00bcf53978 134 SMART SM01235 1 128 9.7E-32 T 13-10-2018 IPR025992 Haem-binding domain SJPD1_0041 bb985679fbbf27a3c7af2c00bcf53978 134 Pfam PF14376 Haem-binding domain 2 125 9.9E-38 T 13-10-2018 IPR025992 Haem-binding domain SJPD1_2755 9151946f65b6064e256a4e2252984504 391 Gene3D G3DSA:1.10.287.130 145 242 2.2E-6 T 13-10-2018 SJPD1_2755 9151946f65b6064e256a4e2252984504 391 SMART SM00387 291 391 1.0E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2755 9151946f65b6064e256a4e2252984504 391 SUPERFAMILY SSF47384 180 242 2.35E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2755 9151946f65b6064e256a4e2252984504 391 Gene3D G3DSA:3.30.565.10 243 391 1.1E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2755 9151946f65b6064e256a4e2252984504 391 SUPERFAMILY SSF55874 252 391 5.89E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2755 9151946f65b6064e256a4e2252984504 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 391 1.2E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2755 9151946f65b6064e256a4e2252984504 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 1.2E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2755 9151946f65b6064e256a4e2252984504 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 1.2E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2755 9151946f65b6064e256a4e2252984504 391 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 390 9.5E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2755 9151946f65b6064e256a4e2252984504 391 Pfam PF00512 His Kinase A (phospho-acceptor) domain 190 237 6.2E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2755 9151946f65b6064e256a4e2252984504 391 SMART SM00388 189 249 0.0016 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2172 c93d26cde7a838ebe6c891583a5b73c6 232 SUPERFAMILY SSF161098 11 217 4.32E-40 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2172 c93d26cde7a838ebe6c891583a5b73c6 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 224 6.4E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2172 c93d26cde7a838ebe6c891583a5b73c6 232 Gene3D G3DSA:1.10.3720.10 4 227 1.5E-43 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2172 c93d26cde7a838ebe6c891583a5b73c6 232 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 15 222 5.0E-64 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 SJPD1_2618 3c1422ea64ce7694e6855f2af36dc2ce 214 Pfam PF13723 Beta-ketoacyl synthase, N-terminal domain 31 183 3.3E-20 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 Gene3D G3DSA:3.40.50.1100 44 143 8.0E-121 T 13-10-2018 SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 SUPERFAMILY SSF53686 2 303 2.36E-99 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 Gene3D G3DSA:3.40.50.1100 5 300 8.0E-121 T 13-10-2018 SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 TIGRFAM TIGR01139 cysK: cysteine synthase A 7 304 7.0E-133 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 7 293 3.7E-66 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 13-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 SJPD1_1693 94217274de5051902bdd32da32f5f1c8 309 TIGRFAM TIGR01136 cysKM: cysteine synthase 7 304 1.7E-127 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Gene3D G3DSA:2.30.30.840 357 415 1.8E-196 T 13-10-2018 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SUPERFAMILY SSF143517 867 965 6.02E-24 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Gene3D G3DSA:3.90.1150.50 871 980 4.6E-20 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Pfam PF03461 TRCF domain 876 965 3.4E-18 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Pfam PF02559 CarD-like/TRCF domain 354 447 2.8E-22 T 13-10-2018 IPR003711 CarD-like/TRCF domain SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SMART SM00490 699 782 9.5E-14 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 305 948 2.4E-250 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SUPERFAMILY SSF141259 351 422 5.75E-20 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 10 971 23.67 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SUPERFAMILY SSF52540 27 240 8.1E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SMART SM00487 474 661 9.6E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SMART SM01058 353 450 3.3E-39 T 13-10-2018 IPR003711 CarD-like/TRCF domain SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Gene3D G3DSA:3.40.50.300 352 860 1.8E-196 T 13-10-2018 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Pfam PF00271 Helicase conserved C-terminal domain 678 781 3.3E-15 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SMART SM00982 875 975 4.5E-27 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Gene3D G3DSA:3.30.2060.10 102 188 2.1E-24 T 13-10-2018 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SUPERFAMILY SSF52540 398 655 4.35E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Pfam PF00270 DEAD/DEAH box helicase 479 636 2.0E-15 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 SUPERFAMILY SSF52540 654 859 3.03E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1999 7a3495b5e62890ef24528ac5eb59b474 989 Gene3D G3DSA:3.40.50.300 416 653 1.8E-196 T 13-10-2018 SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 SMART SM00419 156 205 4.5E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 SUPERFAMILY SSF51206 4 144 3.4E-23 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 Gene3D G3DSA:2.60.120.10 3 142 7.9E-31 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 Pfam PF00027 Cyclic nucleotide-binding domain 28 116 2.3E-8 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 Pfam PF13545 Crp-like helix-turn-helix domain 162 204 1.0E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 SUPERFAMILY SSF46785 148 204 1.8E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2832 86248337c04774ab38ec6cf2ed9552c1 205 Gene3D G3DSA:1.10.10.10 144 205 2.9E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1960 c15804c5eca74abebc1ba2cbdeb9ebc7 317 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 39 260 2.1E-27 T 13-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system SJPD1_1960 c15804c5eca74abebc1ba2cbdeb9ebc7 317 Gene3D G3DSA:3.10.450.620 27 147 7.6E-11 T 13-10-2018 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 SMART SM00874 393 463 9.6E-16 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 SUPERFAMILY SSF54991 683 779 3.66E-21 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 773 30.982 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Pfam PF03147 Ferredoxin-fold anticodon binding domain 687 779 2.5E-19 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 SUPERFAMILY SSF50249 44 192 9.3E-43 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Gene3D G3DSA:3.30.930.10 486 677 9.0E-37 T 13-10-2018 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Gene3D G3DSA:2.40.50.140 40 156 2.7E-65 T 13-10-2018 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 SUPERFAMILY SSF55681 459 676 1.54E-26 T 13-10-2018 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Pfam PF03484 tRNA synthetase B5 domain 398 462 8.7E-13 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 SUPERFAMILY SSF46955 394 467 3.3E-14 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 SMART SM00896 687 779 1.9E-24 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Gene3D G3DSA:3.30.56.10 6 182 2.7E-65 T 13-10-2018 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Gene3D G3DSA:3.30.56.10 392 466 1.7E-16 T 13-10-2018 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Pfam PF01588 Putative tRNA binding domain 45 139 2.6E-22 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 Gene3D G3DSA:3.30.70.380 688 779 3.7E-16 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 SJPD1_0727 6025f1f4c761f153314eb413d67dfebb 779 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 779 6.4E-184 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 SJPD1_0044 c14862f1ce7ffed6d25765cc0605c06a 1022 Pfam PF10593 Z1 domain 458 704 1.4E-71 T 13-10-2018 IPR018310 Putative endonuclease, Z1 domain SJPD1_0044 c14862f1ce7ffed6d25765cc0605c06a 1022 SUPERFAMILY SSF52540 150 348 3.29E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1445 c4e7e3fefafdacfe0ac91be53641f6a5 180 Gene3D G3DSA:1.20.120.1760 8 178 3.2E-13 T 13-10-2018 SJPD1_1445 c4e7e3fefafdacfe0ac91be53641f6a5 180 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SJPD1_1445 c4e7e3fefafdacfe0ac91be53641f6a5 180 PIRSF PIRSF000847 1 180 5.7E-47 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 SJPD1_1445 c4e7e3fefafdacfe0ac91be53641f6a5 180 Pfam PF01066 CDP-alcohol phosphatidyltransferase 3 79 1.0E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SJPD1_1445 c4e7e3fefafdacfe0ac91be53641f6a5 180 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2 177 4.1E-48 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 SUPERFAMILY SSF53383 3 376 1.67E-105 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 PIRSF PIRSF005572 1 382 4.7E-126 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 Gene3D G3DSA:3.40.640.10 14 258 2.5E-141 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 195 214 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 Pfam PF00266 Aminotransferase class-V 3 366 3.4E-87 T 13-10-2018 IPR000192 Aminotransferase class V domain SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 Gene3D G3DSA:3.90.1150.10 3 374 2.5E-141 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2666 38e5e0f7c7017dc77e3b431b33f31a61 396 TIGRFAM TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family 3 384 3.8E-221 T 13-10-2018 IPR017773 Cysteine desulfurase NifS, proteobacteria GO:0006534|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 Gene3D G3DSA:3.30.450.20 388 519 4.9E-23 T 13-10-2018 SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 398 516 1.3E-8 T 13-10-2018 IPR000014 PAS domain SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 520 694 3.4E-43 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 Gene3D G3DSA:3.30.70.270 520 700 4.8E-54 T 13-10-2018 SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 SUPERFAMILY SSF55073 527 698 6.12E-44 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 SMART SM00267 511 696 1.4E-55 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 Pfam PF00990 Diguanylate cyclase, GGDEF domain 522 691 5.6E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 Pfam PF08448 PAS fold 407 512 1.0E-16 T 13-10-2018 IPR013656 PAS fold-4 SJPD1_2482 8b65a541ca2498c53ef5b22bae30f035 700 SUPERFAMILY SSF55785 406 513 1.93E-13 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 SUPERFAMILY SSF48452 103 189 3.68E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 SUPERFAMILY SSF48452 392 764 4.74E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 Gene3D G3DSA:1.25.40.10 643 767 4.4E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 Gene3D G3DSA:1.25.40.10 424 556 6.6E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 SMART SM00028 138 171 7.4E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 SMART SM00028 458 491 8.1E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 SMART SM00028 271 304 2.2 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 Gene3D G3DSA:1.25.40.10 97 212 6.4E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 Pfam PF13181 Tetratricopeptide repeat 461 490 0.0075 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 SUPERFAMILY SSF48452 261 494 2.47E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 Pfam PF13432 Tetratricopeptide repeat 111 167 3.5E-5 T 13-10-2018 SJPD1_2214 4a488f2a1187678b3e303dad70b21011 780 Gene3D G3DSA:1.25.40.10 246 365 5.7E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0187 5de36bf961301eb93bda53552c41070f 289 Gene3D G3DSA:1.10.357.140 14 184 5.6E-45 T 13-10-2018 SJPD1_0187 5de36bf961301eb93bda53552c41070f 289 TIGRFAM TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase 7 288 8.3E-94 T 13-10-2018 IPR006371 4-hydroxybenzoate polyprenyltransferase-related SJPD1_0187 5de36bf961301eb93bda53552c41070f 289 Pfam PF01040 UbiA prenyltransferase family 24 270 2.5E-44 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 PIRSF PIRSF000729 1 255 7.6E-76 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 TIGRFAM TIGR01027 proB: glutamate 5-kinase 2 250 3.1E-71 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 Hamap MF_00456 Glutamate 5-kinase [proB]. 2 254 31.036 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 Gene3D G3DSA:3.40.1160.10 1 251 2.1E-71 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 Pfam PF00696 Amino acid kinase family 3 227 1.8E-41 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 PRINTS PR00474 Glutamate 5-kinase family signature 37 51 3.2E-43 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 PRINTS PR00474 Glutamate 5-kinase family signature 202 222 3.2E-43 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 PRINTS PR00474 Glutamate 5-kinase family signature 109 130 3.2E-43 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 PRINTS PR00474 Glutamate 5-kinase family signature 141 168 3.2E-43 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 PRINTS PR00474 Glutamate 5-kinase family signature 69 97 3.2E-43 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 SJPD1_0615 8e338d872a2cc62772550234b6e40d36 255 SUPERFAMILY SSF53633 2 250 6.02E-59 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_1395 52285517a0ce771b97f9a2dc545daf0b 103 SUPERFAMILY SSF89957 1 97 2.62E-21 T 13-10-2018 IPR029756 MTH1187/YkoF-like SJPD1_1395 52285517a0ce771b97f9a2dc545daf0b 103 Gene3D G3DSA:3.30.70.930 1 96 7.5E-21 T 13-10-2018 IPR029756 MTH1187/YkoF-like SJPD1_1395 52285517a0ce771b97f9a2dc545daf0b 103 Pfam PF01910 Thiamine-binding protein 5 94 6.5E-19 T 13-10-2018 IPR002767 Thiamine-binding protein SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Pfam PF00512 His Kinase A (phospho-acceptor) domain 681 742 1.6E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 22 230 4.6E-87 T 13-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 SUPERFAMILY SSF52540 11 145 1.49E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Gene3D G3DSA:3.40.50.620 232 361 2.9E-10 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 SUPERFAMILY SSF47384 672 744 2.35E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 SMART SM00388 676 743 8.5E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Gene3D G3DSA:3.30.565.10 746 898 2.1E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 SMART SM00387 787 897 1.1E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 SUPERFAMILY SSF55874 732 895 6.55E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 SUPERFAMILY SSF52402 250 356 1.76E-10 T 13-10-2018 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Pfam PF13493 Domain of unknown function (DUF4118) 399 493 1.0E-20 T 13-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 792 894 1.1E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Gene3D G3DSA:1.20.120.620 393 494 2.4E-19 T 13-10-2018 IPR038318 KdpD, transmembrane domain superfamily SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Gene3D G3DSA:3.30.450.40 506 666 1.8E-22 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Pfam PF00582 Universal stress protein family 250 296 7.5E-5 T 13-10-2018 IPR006016 UspA SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 858 876 1.7E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 842 852 1.7E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Gene3D G3DSA:1.10.287.130 667 745 9.9E-15 T 13-10-2018 SJPD1_2644 b9b1bd4042db3a50e0dd8aafd7cd42fd 898 Gene3D G3DSA:3.40.50.300 19 229 1.2E-89 T 13-10-2018 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 4.1E-46 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 4.1E-46 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 4.1E-46 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 4.1E-46 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 4.1E-46 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 SUPERFAMILY SSF52374 1 154 2.95E-46 T 13-10-2018 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 60 3.5E-18 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 34.008 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 Gene3D G3DSA:3.40.50.620 1 159 1.5E-55 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 153 8.0E-4 T 13-10-2018 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 Pfam PF01467 Cytidylyltransferase-like 5 133 1.6E-23 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_1628 d7511eddb0388e076d1b7ce7a402829e 160 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 156 2.4E-60 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 SJPD1_2750 f32c637ef7d6f304540074118e9150ec 394 Gene3D G3DSA:1.20.1600.10 19 394 1.3E-25 T 13-10-2018 SJPD1_2750 f32c637ef7d6f304540074118e9150ec 394 Pfam PF02321 Outer membrane efflux protein 221 391 3.4E-12 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2750 f32c637ef7d6f304540074118e9150ec 394 Pfam PF02321 Outer membrane efflux protein 20 150 6.3E-8 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2750 f32c637ef7d6f304540074118e9150ec 394 SUPERFAMILY SSF56954 5 392 3.53E-30 T 13-10-2018 SJPD1_0135 fa1a4a461b01a354501b68375aa01ffa 198 SUPERFAMILY SSF159594 28 195 8.89E-27 T 13-10-2018 SJPD1_0135 fa1a4a461b01a354501b68375aa01ffa 198 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 29 187 3.3E-10 T 13-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component SJPD1_0135 fa1a4a461b01a354501b68375aa01ffa 198 Gene3D G3DSA:3.40.50.10610 22 198 4.5E-26 T 13-10-2018 SJPD1_0130 4ffa04b44f983d76c937cdce48353278 98 Gene3D G3DSA:1.10.760.10 19 96 2.9E-18 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0130 4ffa04b44f983d76c937cdce48353278 98 PRINTS PR00605 Class IC cytochrome C signature 72 94 7.2E-5 T 13-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 SJPD1_0130 4ffa04b44f983d76c937cdce48353278 98 PRINTS PR00605 Class IC cytochrome C signature 26 37 7.2E-5 T 13-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 SJPD1_0130 4ffa04b44f983d76c937cdce48353278 98 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 94 4.9E-9 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0130 4ffa04b44f983d76c937cdce48353278 98 SUPERFAMILY SSF46626 9 97 6.02E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 SMART SM00862 142 208 5.3E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 SUPERFAMILY SSF52172 1 152 3.42E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 SMART SM00448 2 113 6.0E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 Gene3D G3DSA:3.40.50.2300 1 122 2.5E-30 T 13-10-2018 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 Pfam PF00486 Transcriptional regulatory protein, C terminal 143 208 8.9E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 SUPERFAMILY SSF46894 124 209 9.07E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 Pfam PF00072 Response regulator receiver domain 4 113 3.0E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1290 f4bef5d226464a4916f6a36d31b41666 211 Gene3D G3DSA:1.10.10.10 123 210 8.6E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 Pfam PF12801 4Fe-4S binding domain 67 111 2.0E-13 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 Gene3D G3DSA:3.30.70.20 190 268 7.6E-9 T 13-10-2018 SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 246 257 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 Gene3D G3DSA:2.60.40.10 336 447 3.6E-7 T 13-10-2018 IPR013783 Immunoglobulin-like fold SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 SUPERFAMILY SSF54862 78 318 7.43E-21 T 13-10-2018 SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 14 448 1.8E-150 T 13-10-2018 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021|GO:0055114 SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 329 448 4.2E-23 T 13-10-2018 IPR032879 FixG, C-terminal immunoglobulin-like domain SJPD1_0117 b2f5e0ab0a593eaa69c9226f720e03e3 455 Pfam PF13746 4Fe-4S dicluster domain 191 297 4.9E-43 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 SUPERFAMILY SSF50022 29 160 1.36E-28 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 Pfam PF00355 Rieske [2Fe-2S] domain 52 142 5.2E-12 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 5 152 2.2E-43 T 13-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 94 105 1.1E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 127 139 1.1E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 115 127 1.1E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 43 3.7E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_1004 9d3d92be695f06eeba0414e5847a2495 168 Gene3D G3DSA:2.102.10.10 39 154 6.4E-31 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 SUPERFAMILY SSF50022 29 160 1.36E-28 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 Pfam PF00355 Rieske [2Fe-2S] domain 52 142 5.2E-12 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 5 152 2.2E-43 T 13-10-2018 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 94 105 1.1E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 127 139 1.1E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 115 127 1.1E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 43 3.7E-5 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_2272 9d3d92be695f06eeba0414e5847a2495 168 Gene3D G3DSA:2.102.10.10 39 154 6.4E-31 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SUPERFAMILY SSF141868 380 626 3.66E-83 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 Gene3D G3DSA:3.20.20.450 378 629 2.5E-90 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SMART SM00052 374 621 2.9E-99 T 13-10-2018 IPR001633 EAL domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 208 360 4.9E-37 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SUPERFAMILY SSF55073 214 361 2.12E-39 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 77 204 4.9E-11 T 13-10-2018 IPR000014 PAS domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 Pfam PF00563 EAL domain 380 616 1.5E-71 T 13-10-2018 IPR001633 EAL domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 Pfam PF08447 PAS fold 106 192 1.8E-18 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SUPERFAMILY SSF55785 87 200 1.61E-21 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SMART SM00086 155 198 3.1E-7 T 13-10-2018 IPR001610 PAC motif SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SMART SM00091 81 149 0.003 T 13-10-2018 IPR000014 PAS domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 SMART SM00267 198 364 3.7E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 Pfam PF00990 Diguanylate cyclase, GGDEF domain 210 356 1.1E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 Gene3D G3DSA:3.30.450.20 74 194 1.6E-28 T 13-10-2018 SJPD1_1830 fc2fa9e188bf46711d52e41c581c7028 629 Gene3D G3DSA:3.30.70.270 204 377 8.5E-51 T 13-10-2018 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Gene3D G3DSA:1.10.8.60 637 730 2.5E-24 T 13-10-2018 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 200 330 4.1E-15 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Gene3D G3DSA:1.10.1780.10 1 139 4.4E-24 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 SMART SM01086 637 726 4.2E-26 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 718 0.0 T 13-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Gene3D G3DSA:3.40.50.300 426 635 1.3E-77 T 13-10-2018 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 505 523 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 637 716 3.9E-20 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 SUPERFAMILY SSF52540 423 726 4.5E-71 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Pfam PF07724 AAA domain (Cdc48 subfamily) 474 631 2.9E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 18 60 1.7E-4 T 13-10-2018 IPR004176 Clp, N-terminal SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 107 130 4.0 T 13-10-2018 IPR004176 Clp, N-terminal SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 SUPERFAMILY SSF52540 157 410 2.28E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 478 496 1.5E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 549 567 1.5E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 520 538 1.5E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 582 596 1.5E-39 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 SUPERFAMILY SSF81923 1 137 9.94E-32 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 SMART SM00382 195 340 1.4E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 SMART SM00382 474 639 4.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Gene3D G3DSA:3.40.50.300 144 339 3.1E-68 T 13-10-2018 SJPD1_2013 5a1cdb88dd451babdf2e30f97be047e2 732 Gene3D G3DSA:1.10.8.60 340 425 6.6E-27 T 13-10-2018 SJPD1_2568 2cb8f781fe398c83c515d76f4e4eb56b 135 Gene3D G3DSA:3.30.420.270 61 127 7.2E-7 T 13-10-2018 SJPD1_2568 2cb8f781fe398c83c515d76f4e4eb56b 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 132 4.0E-29 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 Pfam PF01180 Dihydroorotate dehydrogenase 53 337 8.6E-73 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 289 309 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 88 107 - T 13-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 PIRSF PIRSF000164 20 354 2.1E-96 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 5 354 1.7E-119 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 Gene3D G3DSA:3.20.20.70 1 354 3.1E-107 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1449 d3d7f08dd3c6bf2dc3950ca2bbc694eb 354 SUPERFAMILY SSF51395 4 352 1.56E-87 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SUPERFAMILY SSF53850 530 749 3.84E-41 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.40.190.10 276 503 1.1E-61 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 786 944 2.7E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 293 504 9.4E-34 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SMART SM00062 38 258 6.0E-14 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SMART SM00062 285 507 1.1E-22 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SMART SM00062 529 748 2.3E-23 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SUPERFAMILY SSF53850 288 505 7.25E-42 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.40.190.10 519 744 1.7E-64 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.40.190.10 29 253 4.1E-52 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Pfam PF00990 Diguanylate cyclase, GGDEF domain 791 943 6.9E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.40.190.10 369 466 1.1E-61 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.30.70.270 776 945 1.1E-51 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SUPERFAMILY SSF53850 39 257 2.37E-34 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SUPERFAMILY SSF55073 795 945 1.02E-42 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 530 745 2.7E-28 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 255 4.0E-25 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 SMART SM00267 779 945 4.3E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.40.190.10 123 217 4.1E-52 T 13-10-2018 SJPD1_0498 a534b0abe4286223d53b5aeb4cb67094 945 Gene3D G3DSA:3.40.190.10 613 707 1.7E-64 T 13-10-2018 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 ProSitePatterns PS00324 Aspartokinase signature. 4 12 - T 13-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 Pfam PF13840 ACT domain 332 394 9.0E-12 T 13-10-2018 IPR027795 CASTOR, ACT domain SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 Gene3D G3DSA:3.30.70.260 254 398 1.4E-53 T 13-10-2018 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 398 3.1E-139 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 PIRSF PIRSF000726 55 400 6.0E-135 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 PIRSF PIRSF000726 1 59 5.2E-21 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 Gene3D G3DSA:3.40.1160.10 1 253 3.8E-86 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 Pfam PF00696 Amino acid kinase family 1 224 1.0E-50 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 SUPERFAMILY SSF55021 246 324 1.17E-17 T 13-10-2018 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 Pfam PF01842 ACT domain 264 324 2.1E-7 T 13-10-2018 IPR002912 ACT domain SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 61 397 1.2E-120 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 SUPERFAMILY SSF53633 3 242 8.9E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 SUPERFAMILY SSF55021 330 399 2.82E-20 T 13-10-2018 SJPD1_1739 e3298a1d070fcd5b20995bd5a4ef0540 400 Gene3D G3DSA:3.30.70.260 259 333 1.4E-53 T 13-10-2018 SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 PIRSF PIRSF010376 1 257 2.3E-54 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 SUPERFAMILY SSF54211 2 161 8.35E-29 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 256 3.0E-50 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 Gene3D G3DSA:3.30.230.10 1 163 1.6E-40 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 SUPERFAMILY SSF55060 168 254 3.24E-6 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 Pfam PF00288 GHMP kinases N terminal domain 90 146 1.8E-9 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 SJPD1_2017 3946257e6fd70369d3eea930a081a0dc 258 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 1 258 20.222 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 465 474 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 4 14 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 355 369 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 178 193 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 237 255 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 723 735 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 193 206 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 307 323 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 369 389 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR01159 DNA gyrase subunit B signature 739 755 4.5E-62 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 4 770 2.9E-292 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 SUPERFAMILY SSF54211 218 386 7.4E-53 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 SUPERFAMILY SSF56719 389 765 5.49E-87 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 SMART SM00387 29 173 3.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Gene3D G3DSA:3.30.230.10 217 393 6.7E-67 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Gene3D G3DSA:3.40.50.670 655 769 1.8E-27 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 SUPERFAMILY SSF55874 4 215 6.85E-69 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Pfam PF01751 Toprim domain 414 524 8.3E-19 T 13-10-2018 IPR006171 TOPRIM domain SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 1 770 95.501 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 SMART SM00433 33 763 4.2E-281 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 263 276 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 111 125 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 33 48 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 499 516 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 68 81 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 519 531 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 702 718 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 415 429 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 PRINTS PR00418 DNA topoisomerase II family signature 481 497 1.6E-69 T 13-10-2018 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Pfam PF00204 DNA gyrase B 218 385 5.9E-57 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 13-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Gene3D G3DSA:3.40.50.670 394 573 3.8E-74 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 698 759 5.8E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Gene3D G3DSA:3.30.565.10 1 216 1.9E-87 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0003 5b20efbed844f5cf98a2cc9ca0c6c9b6 770 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 170 1.9E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0512 84ab24078202849e3d232253b3a83054 343 Gene3D G3DSA:3.40.50.300 23 184 3.1E-44 T 13-10-2018 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 Gene3D G3DSA:1.10.8.60 185 259 2.4E-24 T 13-10-2018 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 SUPERFAMILY SSF52540 23 251 2.96E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0512 84ab24078202849e3d232253b3a83054 343 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 328 1.2E-25 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 254 329 3.0E-28 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 SMART SM00382 54 189 1.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0512 84ab24078202849e3d232253b3a83054 343 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 237 4.8E-112 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 343 150.167 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 Gene3D G3DSA:1.10.10.10 260 336 1.9E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0512 84ab24078202849e3d232253b3a83054 343 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 328 3.3E-136 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 SJPD1_0512 84ab24078202849e3d232253b3a83054 343 SUPERFAMILY SSF46785 259 332 2.63E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SMART SM00387 549 659 5.4E-34 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Pfam PF00072 Response regulator receiver domain 684 795 1.7E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SMART SM00448 682 795 5.1E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SMART SM00091 304 371 1.9E-6 T 13-10-2018 IPR000014 PAS domain SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Pfam PF00512 His Kinase A (phospho-acceptor) domain 436 502 1.6E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Gene3D G3DSA:3.30.565.10 501 659 5.3E-48 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SMART SM00086 374 416 0.007 T 13-10-2018 IPR001610 PAC motif SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 603 613 6.8E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 643 656 6.8E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 585 599 6.8E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 637 6.8E-15 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Gene3D G3DSA:3.30.450.20 304 414 9.5E-19 T 13-10-2018 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SMART SM00388 436 502 9.9E-19 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SUPERFAMILY SSF52172 682 806 2.28E-36 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SUPERFAMILY SSF158472 249 300 1.83E-7 T 13-10-2018 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SUPERFAMILY SSF47384 421 503 5.69E-20 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 550 658 1.1E-28 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SUPERFAMILY SSF55785 315 425 2.54E-16 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Gene3D G3DSA:1.10.287.130 415 500 1.1E-25 T 13-10-2018 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 301 423 2.7E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Gene3D G3DSA:3.40.50.12740 681 866 1.0E-38 T 13-10-2018 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Gene3D G3DSA:1.20.1480.50 208 303 2.9E-9 T 13-10-2018 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SMART SM00304 248 301 8.5E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 SUPERFAMILY SSF55874 491 655 1.1E-43 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2515 9d39f59bde88150182f4d65fb7bfe019 877 Pfam PF13426 PAS domain 315 415 1.9E-11 T 13-10-2018 IPR000014 PAS domain SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 Pfam PF02107 Flagellar L-ring protein 47 234 1.7E-51 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 PRINTS PR01008 Flagellar L-ring protein signature 68 80 4.7E-14 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 PRINTS PR01008 Flagellar L-ring protein signature 149 164 4.7E-14 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 PRINTS PR01008 Flagellar L-ring protein signature 196 210 4.7E-14 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 PRINTS PR01008 Flagellar L-ring protein signature 175 191 4.7E-14 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 PRINTS PR01008 Flagellar L-ring protein signature 212 226 4.7E-14 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_1463 d6d67f1ef3b236f4433218e052f2e4ec 235 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 233 24.376 T 13-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 SJPD1_0450 99efc123d9647c7768946a19505298a9 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 8 478 1.2E-148 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_0450 99efc123d9647c7768946a19505298a9 487 PIRSF PIRSF002457 1 486 2.5E-138 T 13-10-2018 IPR030676 Citrate carrier CitT-related SJPD1_0450 99efc123d9647c7768946a19505298a9 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 477 8.2E-140 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_0010 5e3f4f4c4c923b1d94b1965947491210 469 PIRSF PIRSF002457 1 469 1.8E-132 T 13-10-2018 IPR030676 Citrate carrier CitT-related SJPD1_0010 5e3f4f4c4c923b1d94b1965947491210 469 Pfam PF00939 Sodium:sulfate symporter transmembrane region 3 464 2.8E-142 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_0010 5e3f4f4c4c923b1d94b1965947491210 469 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 22 467 2.2E-137 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_1825 839b82eda1e627aadadea1fccb15efa5 328 Gene3D G3DSA:2.40.50.100 41 239 7.4E-35 T 13-10-2018 SJPD1_1825 839b82eda1e627aadadea1fccb15efa5 328 Gene3D G3DSA:1.10.287.470 75 204 7.4E-35 T 13-10-2018 SJPD1_1825 839b82eda1e627aadadea1fccb15efa5 328 SUPERFAMILY SSF111369 44 122 2.62E-5 T 13-10-2018 SJPD1_1825 839b82eda1e627aadadea1fccb15efa5 328 Gene3D G3DSA:2.40.30.170 39 316 7.4E-35 T 13-10-2018 SJPD1_1825 839b82eda1e627aadadea1fccb15efa5 328 Pfam PF13437 HlyD family secretion protein 204 315 1.7E-13 T 13-10-2018 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 Gene3D G3DSA:3.30.70.270 252 415 5.5E-50 T 13-10-2018 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 SMART SM00448 4 120 0.0035 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 SMART SM00448 126 240 2.8E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 Pfam PF00072 Response regulator receiver domain 6 105 1.1E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 Pfam PF00072 Response regulator receiver domain 128 240 9.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 SUPERFAMILY SSF55073 262 415 3.61E-43 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0809 05e7f955267e7aac5094865d05892570 417 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 253 416 4.6E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0809 05e7f955267e7aac5094865d05892570 417 SUPERFAMILY SSF52172 3 121 1.28E-16 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0809 05e7f955267e7aac5094865d05892570 417 Gene3D G3DSA:3.40.50.2300 2 124 1.2E-18 T 13-10-2018 SJPD1_0809 05e7f955267e7aac5094865d05892570 417 Pfam PF00990 Diguanylate cyclase, GGDEF domain 258 413 2.1E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0809 05e7f955267e7aac5094865d05892570 417 SMART SM00267 246 417 3.8E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0809 05e7f955267e7aac5094865d05892570 417 SUPERFAMILY SSF52172 125 253 8.25E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0809 05e7f955267e7aac5094865d05892570 417 Gene3D G3DSA:3.40.50.2300 125 251 4.8E-33 T 13-10-2018 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 Gene3D G3DSA:1.10.10.10 1 91 9.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 Pfam PF01022 Bacterial regulatory protein, arsR family 13 59 3.3E-14 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 SMART SM00418 7 84 1.8E-22 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 1.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 1.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.8E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1896 18eda773735b030d8a1a51de0110734b 104 SUPERFAMILY SSF46785 4 85 2.51E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1569 eabad986f6b73fe45d7efd5e99d191c5 879 Gene3D G3DSA:1.20.1330.10 717 855 1.0E-6 T 13-10-2018 SJPD1_1569 eabad986f6b73fe45d7efd5e99d191c5 879 Pfam PF00669 Bacterial flagellin N-terminal helical region 7 138 5.3E-15 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 SJPD1_1569 eabad986f6b73fe45d7efd5e99d191c5 879 Pfam PF00700 Bacterial flagellin C-terminal helical region 798 879 2.6E-9 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 SJPD1_1569 eabad986f6b73fe45d7efd5e99d191c5 879 SUPERFAMILY SSF64518 1 879 5.36E-37 T 13-10-2018 SJPD1_1569 eabad986f6b73fe45d7efd5e99d191c5 879 Gene3D G3DSA:1.20.1330.10 41 236 4.1E-28 T 13-10-2018 SJPD1_1419 0d5a3555e04b2497bf35312643e03bf7 282 Pfam PF02618 YceG-like family 15 281 3.8E-59 T 13-10-2018 IPR003770 Endolytic murein transglycosylase SJPD1_1419 0d5a3555e04b2497bf35312643e03bf7 282 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 1 282 25.437 T 13-10-2018 IPR003770 Endolytic murein transglycosylase SJPD1_1419 0d5a3555e04b2497bf35312643e03bf7 282 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 69 280 4.0E-44 T 13-10-2018 IPR003770 Endolytic murein transglycosylase SJPD1_2347 a27c0edea83f95ad68d6de202defb073 465 SUPERFAMILY SSF88723 5 156 1.77E-6 T 13-10-2018 IPR029060 PIN-like domain superfamily SJPD1_2347 a27c0edea83f95ad68d6de202defb073 465 Pfam PF02562 PhoH-like protein 233 451 2.1E-47 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 SJPD1_2347 a27c0edea83f95ad68d6de202defb073 465 Gene3D G3DSA:3.40.50.300 230 457 3.0E-42 T 13-10-2018 SJPD1_2347 a27c0edea83f95ad68d6de202defb073 465 SUPERFAMILY SSF52540 232 434 1.2E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2347 a27c0edea83f95ad68d6de202defb073 465 Gene3D G3DSA:3.40.50.1010 2 158 1.1E-15 T 13-10-2018 SJPD1_2347 a27c0edea83f95ad68d6de202defb073 465 Pfam PF13638 PIN domain 7 154 2.6E-22 T 13-10-2018 IPR002716 PIN domain SJPD1_1882 46444608ea7e83ab4d47d7b6732fe77c 103 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 9 102 24.601 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 SJPD1_1882 46444608ea7e83ab4d47d7b6732fe77c 103 Pfam PF06865 Protein of unknown function (DUF1255) 10 101 2.1E-34 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 SJPD1_1882 46444608ea7e83ab4d47d7b6732fe77c 103 Gene3D G3DSA:2.60.120.10 1 103 1.2E-38 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_1882 46444608ea7e83ab4d47d7b6732fe77c 103 SUPERFAMILY SSF51182 9 101 3.91E-30 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 SUPERFAMILY SSF53335 478 642 1.7E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 Gene3D G3DSA:3.40.50.150 470 640 1.8E-19 T 13-10-2018 SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 Gene3D G3DSA:3.90.1580.10 182 460 4.9E-24 T 13-10-2018 SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 Pfam PF13847 Methyltransferase domain 494 632 2.2E-10 T 13-10-2018 IPR025714 Methyltransferase domain SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 TIGRFAM TIGR04345 ovoA_Cterm: putative 4-mercaptohistidine N1-methyltranferase 459 695 1.6E-84 T 13-10-2018 IPR027625 Putative 4-mercaptohistidine N1-methyltranferase, OvoA C-terminal domain SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 SUPERFAMILY SSF56436 191 448 1.06E-56 T 13-10-2018 IPR016187 C-type lectin fold SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 Pfam PF03781 Sulfatase-modifying factor enzyme 1 215 446 2.1E-27 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 Pfam PF12867 DinB superfamily 29 162 1.3E-6 T 13-10-2018 IPR024775 DinB-like domain SJPD1_2206 a76e99ec5d328cab4002056e31dc357c 696 TIGRFAM TIGR04344 ovoA_Nterm: 5-histidylcysteine sulfoxide synthase 8 446 1.7E-212 T 13-10-2018 IPR027577 5-histidylcysteine sulfoxide synthase SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 90 107 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 185 203 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 23 45 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 72 89 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 2 22 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 167 184 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PRINTS PR00775 90kDa heat shock protein signature 117 139 2.3E-63 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 22 152 1.5E-12 T 13-10-2018 SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Gene3D G3DSA:3.40.50.11260 398 484 1.3E-25 T 13-10-2018 SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 SUPERFAMILY SSF55874 2 208 4.98E-67 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Gene3D G3DSA:1.20.120.790 487 620 6.5E-39 T 13-10-2018 IPR037196 HSP90, C-terminal domain SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 SUPERFAMILY SSF54211 231 483 3.64E-90 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 22 31 - T 13-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 SMART SM00387 24 179 1.9E-7 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Hamap MF_00505 Chaperone protein HtpG [htpG]. 1 620 30.66 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Gene3D G3DSA:3.30.565.10 1 222 2.4E-76 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 SUPERFAMILY SSF110942 508 620 1.7E-32 T 13-10-2018 IPR037196 HSP90, C-terminal domain SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Pfam PF00183 Hsp90 protein 212 623 9.1E-115 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 PIRSF PIRSF002583 1 623 5.3E-212 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 SJPD1_1773 af1dbd321f0c187754e415ac6e1a8bd4 623 Gene3D G3DSA:3.30.230.80 230 397 2.2E-65 T 13-10-2018 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 262 275 - T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 SMART SM00382 93 294 3.0E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 Pfam PF02881 SRP54-type protein, helical bundle domain 5 58 1.8E-7 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 Pfam PF00448 SRP54-type protein, GTPase domain 95 288 5.7E-71 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 Gene3D G3DSA:1.20.120.140 5 299 3.2E-95 T 13-10-2018 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 SUPERFAMILY SSF52540 88 291 8.24E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 SMART SM00962 94 289 2.2E-102 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 SUPERFAMILY SSF47364 2 80 1.7E-9 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 Gene3D G3DSA:1.10.260.30 304 438 2.2E-39 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 Gene3D G3DSA:3.40.50.300 83 278 3.2E-95 T 13-10-2018 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 TIGRFAM TIGR00959 ffh: signal recognition particle protein 3 423 3.3E-149 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 SMART SM00963 1 79 1.2E-4 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 Pfam PF02978 Signal peptide binding domain 320 420 5.3E-31 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 SJPD1_2038 cfc7357e2245c92e835f92b43562810a 446 SUPERFAMILY SSF47446 291 424 2.62E-43 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 SJPD1_2087 4f2b12a51e6793fd2a217c91e6279545 351 SUPERFAMILY SSF53474 48 342 1.34E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2087 4f2b12a51e6793fd2a217c91e6279545 351 Pfam PF01738 Dienelactone hydrolase family 63 180 5.8E-8 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 SJPD1_2087 4f2b12a51e6793fd2a217c91e6279545 351 Gene3D G3DSA:3.40.50.1820 59 333 5.2E-87 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2087 4f2b12a51e6793fd2a217c91e6279545 351 Gene3D G3DSA:1.10.10.800 188 277 5.2E-87 T 13-10-2018 SJPD1_1252 2db3e701ba64ac4f0bb8ca4957e9a9de 98 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 87 1.5E-13 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 SJPD1_1252 2db3e701ba64ac4f0bb8ca4957e9a9de 98 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 SJPD1_1252 2db3e701ba64ac4f0bb8ca4957e9a9de 98 Gene3D G3DSA:3.10.20.30 1 98 6.7E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_1252 2db3e701ba64ac4f0bb8ca4957e9a9de 98 SUPERFAMILY SSF54292 2 95 2.17E-17 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 6 483 1.5E-132 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 162 186 5.1E-27 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 132 151 5.1E-27 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 238 262 5.1E-27 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 326 345 5.1E-27 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 378 404 5.1E-27 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0468 1aeaf535141cfe0ef22ffbac7c6951e9 493 Pfam PF00361 Proton-conducting membrane transporter 126 416 5.3E-53 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 SUPERFAMILY SSF52029 184 375 1.22E-83 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 Gene3D G3DSA:3.50.7.10 191 371 1.2E-231 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 Hamap MF_00600 60 kDa chaperonin [groL]. 1 545 41.678 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 ProSitePatterns PS00296 Chaperonins cpn60 signature. 404 415 - T 13-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 1.8E-255 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 Gene3D G3DSA:3.30.260.10 135 409 1.2E-231 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 SUPERFAMILY SSF48592 372 522 1.68E-31 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 Gene3D G3DSA:1.10.560.10 7 519 1.2E-231 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 PRINTS PR00298 60kDa chaperonin signature 82 109 8.9E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 PRINTS PR00298 60kDa chaperonin signature 349 374 8.9E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 PRINTS PR00298 60kDa chaperonin signature 267 290 8.9E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 PRINTS PR00298 60kDa chaperonin signature 26 52 8.9E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 PRINTS PR00298 60kDa chaperonin signature 397 418 8.9E-72 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 521 7.9E-100 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 SJPD1_0931 68aaa832256fbda3016b57dfc6e38b2b 546 SUPERFAMILY SSF48592 1 229 1.44E-63 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 227 2.4E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 Pfam PF00072 Response regulator receiver domain 14 123 2.3E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 SUPERFAMILY SSF52172 11 182 1.37E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 SMART SM00862 157 227 1.7E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 Gene3D G3DSA:3.40.50.2300 6 136 3.8E-31 T 13-10-2018 SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 SMART SM00448 12 123 9.0E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0898 97099ef1096cb583b7f79b33dffa593b 230 Gene3D G3DSA:1.10.10.10 143 229 1.6E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1654 fb3c2c73baa66e7a9f078d31cea4fd6f 373 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 370 1.3E-158 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 SJPD1_1654 fb3c2c73baa66e7a9f078d31cea4fd6f 373 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 370 53.402 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 SJPD1_1654 fb3c2c73baa66e7a9f078d31cea4fd6f 373 Gene3D G3DSA:3.20.20.105 1 373 1.2E-162 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 SJPD1_1654 fb3c2c73baa66e7a9f078d31cea4fd6f 373 SUPERFAMILY SSF51713 1 370 4.05E-148 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 SJPD1_1654 fb3c2c73baa66e7a9f078d31cea4fd6f 373 Pfam PF01702 Queuine tRNA-ribosyltransferase 128 367 6.4E-90 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 SJPD1_1654 fb3c2c73baa66e7a9f078d31cea4fd6f 373 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 371 1.2E-151 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 SUPERFAMILY SSF63867 327 398 2.75E-9 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Pfam PF03454 MoeA C-terminal region (domain IV) 330 398 4.4E-7 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 251 285 - T 13-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Pfam PF00994 Probable molybdopterin binding domain 179 315 1.7E-21 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 SMART SM00852 179 316 5.6E-31 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Gene3D G3DSA:2.40.340.10 327 393 1.9E-100 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Gene3D G3DSA:3.40.980.10 174 326 1.9E-100 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Pfam PF03453 MoeA N-terminal region (domain I and II) 8 166 8.4E-33 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Gene3D G3DSA:2.170.190.11 50 140 1.9E-100 T 13-10-2018 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 176 305 1.6E-25 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 SUPERFAMILY SSF53218 177 321 4.71E-34 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 Gene3D G3DSA:3.90.105.10 29 173 1.9E-100 T 13-10-2018 SJPD1_1633 8985172bf426eb1d210262f8e1bdd98e 398 SUPERFAMILY SSF63882 5 175 2.09E-43 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0603 6fca8036339764ad835f2d47231def42 123 SUPERFAMILY SSF55298 2 123 7.85E-50 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 SJPD1_0603 6fca8036339764ad835f2d47231def42 123 Gene3D G3DSA:3.30.1330.40 1 123 3.1E-55 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 SJPD1_0603 6fca8036339764ad835f2d47231def42 123 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 1 123 3.1E-55 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 SJPD1_0603 6fca8036339764ad835f2d47231def42 123 Pfam PF01042 Endoribonuclease L-PSP 7 122 1.0E-46 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 SJPD1_0603 6fca8036339764ad835f2d47231def42 123 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 99 117 - T 13-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 SUPERFAMILY SSF52540 407 841 3.48E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 12 285 7.0E-71 T 13-10-2018 IPR014059 Conjugative relaxase, N-terminal SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 Pfam PF13604 AAA domain 414 601 3.4E-46 T 13-10-2018 SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 SUPERFAMILY SSF55464 8 286 1.69E-75 T 13-10-2018 SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 Gene3D G3DSA:3.40.50.300 579 845 1.7E-10 T 13-10-2018 SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 Pfam PF08751 TrwC relaxase 11 285 1.3E-85 T 13-10-2018 IPR014862 TrwC relaxase SJPD1_0065 351f264d62eb4d111eeed4dc6b5f4e92 951 Gene3D G3DSA:3.40.50.300 379 578 2.6E-35 T 13-10-2018 SJPD1_1504 4db7e5969b0c763ffff4aaa6c5cb26db 501 Pfam PF13484 4Fe-4S double cluster binding domain 365 429 4.6E-11 T 13-10-2018 SJPD1_1504 4db7e5969b0c763ffff4aaa6c5cb26db 501 SUPERFAMILY SSF54862 363 444 4.61E-11 T 13-10-2018 SJPD1_1504 4db7e5969b0c763ffff4aaa6c5cb26db 501 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 366 377 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1504 4db7e5969b0c763ffff4aaa6c5cb26db 501 Gene3D G3DSA:3.30.70.20 360 431 9.8E-9 T 13-10-2018 SJPD1_1504 4db7e5969b0c763ffff4aaa6c5cb26db 501 Pfam PF13486 Reductive dehalogenase subunit 110 352 3.3E-34 T 13-10-2018 IPR028894 Reductive dehalogenase domain SJPD1_1504 4db7e5969b0c763ffff4aaa6c5cb26db 501 TIGRFAM TIGR02486 RDH: reductive dehalogenase 173 464 3.7E-100 T 13-10-2018 IPR012832 Reductive dehalogenase SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 Gene3D G3DSA:2.40.50.100 65 214 1.1E-72 T 13-10-2018 SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 Gene3D G3DSA:1.10.287.470 99 176 1.1E-72 T 13-10-2018 SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 286 1.3E-22 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 379 8.2E-52 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 Gene3D G3DSA:2.40.30.170 54 293 1.1E-72 T 13-10-2018 SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 Gene3D G3DSA:2.40.420.20 49 373 1.1E-72 T 13-10-2018 SJPD1_2180 db16ef1f38f0dcd119d6c192314e794a 394 SUPERFAMILY SSF111369 55 290 1.83E-26 T 13-10-2018 SJPD1_2318 71cddcf5965150bda0c6cfc8bcaf6f11 331 PIRSF PIRSF002756 6 331 2.8E-103 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 SJPD1_2318 71cddcf5965150bda0c6cfc8bcaf6f11 331 SUPERFAMILY SSF53850 21 328 4.4E-89 T 13-10-2018 SJPD1_2318 71cddcf5965150bda0c6cfc8bcaf6f11 331 Gene3D G3DSA:3.40.190.10 21 317 2.1E-113 T 13-10-2018 SJPD1_2318 71cddcf5965150bda0c6cfc8bcaf6f11 331 Pfam PF12849 PBP superfamily domain 18 298 1.5E-58 T 13-10-2018 IPR024370 PBP domain SJPD1_2318 71cddcf5965150bda0c6cfc8bcaf6f11 331 Gene3D G3DSA:3.40.190.10 95 272 2.1E-113 T 13-10-2018 SJPD1_2318 71cddcf5965150bda0c6cfc8bcaf6f11 331 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 21 327 4.8E-106 T 13-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 SJPD1_2408 abbb556fa849515c04509289fa212941 105 Pfam PF02575 YbaB/EbfC DNA-binding family 14 98 1.0E-21 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family SJPD1_2408 abbb556fa849515c04509289fa212941 105 PIRSF PIRSF004555 3 105 2.2E-24 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family SJPD1_2408 abbb556fa849515c04509289fa212941 105 Gene3D G3DSA:3.30.1310.10 3 101 1.8E-33 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily SJPD1_2408 abbb556fa849515c04509289fa212941 105 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 97 17.338 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family SJPD1_2408 abbb556fa849515c04509289fa212941 105 SUPERFAMILY SSF82607 14 99 1.44E-20 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily SJPD1_2408 abbb556fa849515c04509289fa212941 105 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 5 98 3.8E-21 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family SJPD1_0491 828666ff4d0f67e6f40f4ae667ec4ec8 141 Gene3D G3DSA:3.40.630.30 1 139 6.4E-29 T 13-10-2018 SJPD1_0491 828666ff4d0f67e6f40f4ae667ec4ec8 141 SUPERFAMILY SSF55729 1 135 1.69E-24 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_0491 828666ff4d0f67e6f40f4ae667ec4ec8 141 Pfam PF00583 Acetyltransferase (GNAT) family 33 128 1.4E-12 T 13-10-2018 IPR000182 GNAT domain SJPD1_0002 3c032fa797422fac6997e646250e564b 355 PIRSF PIRSF000804 1 355 1.4E-75 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 Gene3D G3DSA:3.10.150.10 1 118 1.3E-24 T 13-10-2018 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 SUPERFAMILY SSF55979 240 354 4.94E-21 T 13-10-2018 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 Gene3D G3DSA:3.10.150.10 120 241 3.7E-30 T 13-10-2018 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 SUPERFAMILY SSF55979 125 239 1.96E-24 T 13-10-2018 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 117 6.7E-17 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 353 2.3E-83 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 241 353 5.2E-14 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 238 1.9E-20 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 Gene3D G3DSA:3.10.150.10 242 355 7.0E-35 T 13-10-2018 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 SMART SM00480 17 354 6.2E-76 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 SJPD1_0002 3c032fa797422fac6997e646250e564b 355 SUPERFAMILY SSF55979 1 119 2.76E-19 T 13-10-2018 SJPD1_0208 8967b2ba03b9103ba7538f47495959dd 317 SUPERFAMILY SSF102114 9 274 4.71E-44 T 13-10-2018 SJPD1_0208 8967b2ba03b9103ba7538f47495959dd 317 SMART SM00729 21 267 6.4E-39 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0208 8967b2ba03b9103ba7538f47495959dd 317 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 7 314 1.5E-85 T 13-10-2018 IPR005911 Protein YhcC-like GO:0051536 SJPD1_0208 8967b2ba03b9103ba7538f47495959dd 317 Gene3D G3DSA:3.80.30.20 40 255 5.8E-17 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_0208 8967b2ba03b9103ba7538f47495959dd 317 Pfam PF16199 Radical_SAM C-terminal domain 229 311 8.3E-17 T 13-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 SJPD1_0208 8967b2ba03b9103ba7538f47495959dd 317 Pfam PF04055 Radical SAM superfamily 41 222 3.3E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1759 80044db6ea5ea93da50170141bf7495e 524 SUPERFAMILY SSF56801 3 522 3.53E-107 T 13-10-2018 SJPD1_1759 80044db6ea5ea93da50170141bf7495e 524 Gene3D G3DSA:3.30.300.30 422 523 4.3E-20 T 13-10-2018 SJPD1_1759 80044db6ea5ea93da50170141bf7495e 524 Gene3D G3DSA:3.40.50.12780 3 421 1.0E-75 T 13-10-2018 SJPD1_1759 80044db6ea5ea93da50170141bf7495e 524 Pfam PF00501 AMP-binding enzyme 11 426 2.5E-72 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_0734 eb84779317cd23f7eb39fd91f54c00b2 268 Gene3D G3DSA:2.40.30.170 23 264 1.7E-46 T 13-10-2018 SJPD1_0734 eb84779317cd23f7eb39fd91f54c00b2 268 Gene3D G3DSA:2.40.50.100 34 193 1.7E-46 T 13-10-2018 SJPD1_0734 eb84779317cd23f7eb39fd91f54c00b2 268 Gene3D G3DSA:1.10.287.470 68 159 1.7E-46 T 13-10-2018 SJPD1_0734 eb84779317cd23f7eb39fd91f54c00b2 268 SUPERFAMILY SSF111369 25 266 2.22E-17 T 13-10-2018 SJPD1_0734 eb84779317cd23f7eb39fd91f54c00b2 268 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 21 266 3.8E-32 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_0734 eb84779317cd23f7eb39fd91f54c00b2 268 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 33 262 3.4E-25 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_1783 352eb795bbeb65862925d75b863cb008 442 Gene3D G3DSA:3.40.50.300 286 395 9.2E-8 T 13-10-2018 SJPD1_1783 352eb795bbeb65862925d75b863cb008 442 Pfam PF05970 PIF1-like helicase 13 180 8.7E-24 T 13-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 SJPD1_1783 352eb795bbeb65862925d75b863cb008 442 Gene3D G3DSA:3.40.50.300 2 157 1.5E-30 T 13-10-2018 SJPD1_1783 352eb795bbeb65862925d75b863cb008 442 SUPERFAMILY SSF52540 127 416 4.7E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1783 352eb795bbeb65862925d75b863cb008 442 SUPERFAMILY SSF52540 9 164 3.07E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1783 352eb795bbeb65862925d75b863cb008 442 Pfam PF02689 Helicase 343 399 2.4E-5 T 13-10-2018 IPR003840 DNA helicase GO:0004386|GO:0005524 SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 SMART SM00471 155 292 8.6E-8 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 SUPERFAMILY SSF52172 1 165 5.55E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 Gene3D G3DSA:1.10.3210.10 134 331 2.4E-64 T 13-10-2018 SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 Gene3D G3DSA:3.40.50.2300 1 133 1.1E-32 T 13-10-2018 SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 Pfam PF00072 Response regulator receiver domain 4 113 6.7E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 SUPERFAMILY SSF109604 152 321 7.18E-36 T 13-10-2018 SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 SMART SM00448 2 113 2.9E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1836 a63c8855da0987d9ee3a8765db061ff2 338 Pfam PF01966 HD domain 160 281 8.5E-20 T 13-10-2018 IPR006674 HD domain SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Gene3D G3DSA:1.20.1110.10 556 597 5.7E-25 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Pfam PF00122 E1-E2 ATPase 103 281 4.6E-38 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 SUPERFAMILY SSF81653 109 203 8.37E-23 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 303 309 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 SUPERFAMILY SSF81665 27 295 4.71E-11 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 301 315 2.4E-25 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 534 546 2.4E-25 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 458 468 2.4E-25 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 530 2.4E-25 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 150 164 2.4E-25 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 367 596 3.9E-43 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 71 339 5.8E-32 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Pfam PF00702 haloacid dehalogenase-like hydrolase 297 525 5.9E-29 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 2 671 0.0 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 7 675 38.688 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Gene3D G3DSA:2.70.150.20 96 208 5.6E-28 T 13-10-2018 SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 SUPERFAMILY SSF56784 289 554 3.78E-37 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Gene3D G3DSA:3.40.50.1000 487 555 5.7E-25 T 13-10-2018 IPR023214 HAD superfamily SJPD1_2646 9d7d04d955b7f80cbe98b58f4c258e43 677 Gene3D G3DSA:3.40.1110.10 312 446 3.4E-41 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 SJPD1_1988 6fca2426d898f86bc0f8654e30232bf3 180 Pfam PF12118 SprA-related family 26 158 1.8E-29 T 13-10-2018 IPR021973 SprA-related family SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Gene3D G3DSA:3.30.70.20 297 417 3.1E-5 T 13-10-2018 SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Pfam PF13534 4Fe-4S dicluster domain 302 364 1.3E-7 T 13-10-2018 SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 351 362 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 SUPERFAMILY SSF51971 64 224 3.18E-18 T 13-10-2018 SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Gene3D G3DSA:1.10.1060.10 3 106 6.0E-21 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Pfam PF02754 Cysteine-rich domain 443 529 0.0024 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Pfam PF02754 Cysteine-rich domain 564 641 2.5E-5 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 SUPERFAMILY SSF46548 240 367 6.54E-12 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 9 93 4.2E-17 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Gene3D G3DSA:3.50.50.60 107 277 2.2E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1854 d21867bcec46c8dc0dedecfecd3e3395 787 Pfam PF13450 NAD(P)-binding Rossmann-like domain 113 154 1.2E-9 T 13-10-2018 SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SMART SM00671 155 190 2.4E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SMART SM00671 191 226 2.5E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SMART SM00671 85 120 2.6E-8 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SMART SM00671 121 154 2.6E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SMART SM00671 227 262 7.2E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SMART SM00671 48 84 5.0E-8 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SUPERFAMILY SSF81901 22 168 3.14E-33 T 13-10-2018 SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 SUPERFAMILY SSF81901 120 268 1.57E-37 T 13-10-2018 SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Gene3D G3DSA:1.25.40.10 15 275 5.4E-71 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Pfam PF08238 Sel1 repeat 158 188 0.0014 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Pfam PF08238 Sel1 repeat 48 83 5.7E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Pfam PF08238 Sel1 repeat 85 119 2.7E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Pfam PF08238 Sel1 repeat 196 226 0.17 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Pfam PF08238 Sel1 repeat 120 152 3.6E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_1076 ddc8e774e986ef07f151d822f80f99b1 277 Pfam PF08238 Sel1 repeat 229 261 1.6E-4 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF50891 624 750 3.03E-31 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 449 766 3.8E-89 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF50891 912 1044 7.21E-27 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF160467 796 888 2.09E-18 T 13-10-2018 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Gene3D G3DSA:2.40.50.100 1124 1197 7.8E-25 T 13-10-2018 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Gene3D G3DSA:2.40.100.10 878 1101 6.4E-98 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SMART SM00878 336 440 3.7E-49 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Pfam PF02785 Biotin carboxylase C-terminal domain 336 440 9.3E-35 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 472 743 1.7E-82 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF56059 83 352 6.19E-61 T 13-10-2018 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF52440 1 112 3.38E-47 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1198 0.0 T 13-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Gene3D G3DSA:3.30.1360.40 780 873 5.4E-27 T 13-10-2018 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 319 5.9E-61 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Gene3D G3DSA:2.40.100.10 623 779 5.7E-58 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SMART SM00797 471 760 1.8E-152 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.8E-45 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF51230 1122 1198 1.83E-21 T 13-10-2018 IPR011053 Single hybrid motif SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Gene3D G3DSA:3.30.470.130 1 444 1.2E-178 T 13-10-2018 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 796 1017 4.3E-49 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 Pfam PF00364 Biotin-requiring enzyme 1137 1197 6.9E-19 T 13-10-2018 IPR000089 Biotin/lipoyl attachment SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SUPERFAMILY SSF51246 330 442 1.67E-35 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 SJPD1_2634 d947fabe6bbb15ce902b3bec1dc38252 1202 SMART SM00796 795 1028 5.0E-116 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D SJPD1_0221 c76e3c9b78e8aa9eb549324988d7406e 149 Pfam PF07977 FabA-like domain 12 141 3.8E-39 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 SJPD1_0221 c76e3c9b78e8aa9eb549324988d7406e 149 Gene3D G3DSA:3.10.129.10 1 149 2.5E-59 T 13-10-2018 SJPD1_0221 c76e3c9b78e8aa9eb549324988d7406e 149 SUPERFAMILY SSF54637 2 146 4.98E-47 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_0221 c76e3c9b78e8aa9eb549324988d7406e 149 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3 146 9.7E-58 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 SJPD1_0221 c76e3c9b78e8aa9eb549324988d7406e 149 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 3 148 34.306 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 Gene3D G3DSA:2.40.40.20 805 929 1.0E-43 T 13-10-2018 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 3 929 0.0 T 13-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 3 22 3.3E-8 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 Pfam PF01568 Molydopterin dinucleotide binding domain 816 923 2.0E-23 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 Pfam PF00384 Molybdopterin oxidoreductase 97 619 1.8E-68 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 26 2.2E-6 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 SMART SM00926 40 94 1.5E-15 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 45 62 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 SUPERFAMILY SSF50692 794 929 6.01E-39 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 SUPERFAMILY SSF53706 36 647 1.31E-157 T 13-10-2018 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 41 93 2.5E-18 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0874 18b61f272ca8d5a8ffa15ea95105eca7 929 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 929 31.116 T 13-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 19 84 1.6E-17 T 13-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Gene3D G3DSA:3.40.1390.10 1 96 1.5E-20 T 13-10-2018 SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 SUPERFAMILY SSF51161 28 306 5.39E-73 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Gene3D G3DSA:2.160.10.10 97 295 2.8E-56 T 13-10-2018 SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 99 132 2.8E-7 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 212 247 1.2E-5 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 134 168 2.5E-8 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 6 315 1.5E-113 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 2 315 32.582 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 SJPD1_1614 57b505a17a40f8d3ed0e840c12b7b464 316 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 119 147 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Gene3D G3DSA:1.20.1580.10 88 486 1.2E-223 T 13-10-2018 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Gene3D G3DSA:3.40.50.300 607 929 3.7E-134 T 13-10-2018 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Pfam PF00005 ABC transporter 614 850 1.6E-9 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 SUPERFAMILY SSF52540 611 903 5.91E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Gene3D G3DSA:3.40.50.300 4 587 1.2E-223 T 13-10-2018 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Gene3D G3DSA:3.30.190.20 128 237 1.2E-223 T 13-10-2018 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 2 915 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 ProSitePatterns PS00211 ABC transporters family signature. 820 834 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Gene3D G3DSA:1.20.1580.10 682 820 3.7E-134 T 13-10-2018 SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 SUPERFAMILY SSF52540 4 563 1.61E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0672 35c219e3dd4dbac95911f4271cf33533 939 Gene3D G3DSA:1.10.8.280 289 393 1.2E-223 T 13-10-2018 SJPD1_1153 5438c0742d21d47ec4d25b09534d775d 169 Gene3D G3DSA:2.40.50.140 1 120 8.2E-39 T 13-10-2018 SJPD1_1153 5438c0742d21d47ec4d25b09534d775d 169 PIRSF PIRSF002070 1 156 1.1E-31 T 13-10-2018 SJPD1_1153 5438c0742d21d47ec4d25b09534d775d 169 SUPERFAMILY SSF50249 1 169 6.51E-49 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1153 5438c0742d21d47ec4d25b09534d775d 169 Pfam PF00436 Single-strand binding protein family 2 105 1.7E-34 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 SJPD1_1153 5438c0742d21d47ec4d25b09534d775d 169 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 169 9.6E-53 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 SJPD1_1153 5438c0742d21d47ec4d25b09534d775d 169 Hamap MF_00984 Single-stranded DNA-binding protein. 2 109 32.81 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 SJPD1_2625 1d63250d2846f33e6c4c90a5ed3d11e9 91 SUPERFAMILY SSF55008 17 85 5.37E-15 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 SJPD1_2625 1d63250d2846f33e6c4c90a5ed3d11e9 91 Pfam PF00403 Heavy-metal-associated domain 20 80 3.8E-10 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 SJPD1_2625 1d63250d2846f33e6c4c90a5ed3d11e9 91 Gene3D G3DSA:3.30.70.100 20 84 1.3E-13 T 13-10-2018 SJPD1_2150 aa86f7b5dc266a0815548b324a4ef4a7 273 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 123 139 - T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2150 aa86f7b5dc266a0815548b324a4ef4a7 273 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 40 149 1.4E-26 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2150 aa86f7b5dc266a0815548b324a4ef4a7 273 SUPERFAMILY SSF56770 28 158 8.24E-53 T 13-10-2018 SJPD1_2150 aa86f7b5dc266a0815548b324a4ef4a7 273 Gene3D G3DSA:3.40.50.12280 4 175 2.3E-52 T 13-10-2018 SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 Gene3D G3DSA:3.30.1330.30 1 67 3.4E-5 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 Gene3D G3DSA:3.40.1280.10 68 226 2.4E-40 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 Pfam PF00588 SpoU rRNA Methylase family 84 221 1.4E-33 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 SUPERFAMILY SSF55315 1 70 2.59E-8 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 2 225 2.0E-53 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 SMART SM00967 2 74 5.4E-8 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 SUPERFAMILY SSF75217 62 221 5.17E-39 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases SJPD1_0198 2db80391f294c6333a72b4ce87da054f 227 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 2 72 2.5E-8 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 SJPD1_1663 df13670daf37c865e42205d0ff8df420 332 Gene3D G3DSA:3.20.20.30 2 331 2.3E-95 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 SJPD1_1663 df13670daf37c865e42205d0ff8df420 332 Pfam PF00296 Luciferase-like monooxygenase 25 305 2.6E-33 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 SJPD1_1663 df13670daf37c865e42205d0ff8df420 332 SUPERFAMILY SSF51679 6 326 8.64E-77 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 SJPD1_1663 df13670daf37c865e42205d0ff8df420 332 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 8 327 3.2E-128 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 SJPD1_2510 a74d22bc7644e0b2f92eeba40a0b128e 231 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 3 231 2.8E-97 T 13-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE SJPD1_2510 a74d22bc7644e0b2f92eeba40a0b128e 231 SMART SM00382 26 200 7.6E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2510 a74d22bc7644e0b2f92eeba40a0b128e 231 Pfam PF00005 ABC transporter 17 160 6.2E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2510 a74d22bc7644e0b2f92eeba40a0b128e 231 SUPERFAMILY SSF52540 2 222 4.37E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2510 a74d22bc7644e0b2f92eeba40a0b128e 231 Gene3D G3DSA:3.40.50.300 1 230 7.8E-57 T 13-10-2018 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Pfam PF02151 UvrB/uvrC motif 211 236 8.3E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 SUPERFAMILY SSF46600 200 237 2.35E-7 T 13-10-2018 IPR036876 UVR domain superfamily SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Gene3D G3DSA:3.30.420.340 373 539 4.1E-42 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 2 580 5.8E-163 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 382 533 3.3E-41 T 13-10-2018 IPR001162 UvrC family homology region SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 596 23.243 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 SUPERFAMILY SSF82771 13 102 1.16E-17 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Pfam PF01541 GIY-YIG catalytic domain 13 95 1.3E-8 T 13-10-2018 IPR000305 GIY-YIG endonuclease SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 SMART SM00465 12 100 2.2E-21 T 13-10-2018 IPR000305 GIY-YIG endonuclease SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Pfam PF14520 Helix-hairpin-helix domain 547 599 2.1E-5 T 13-10-2018 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Gene3D G3DSA:1.10.150.20 540 597 1.8E-8 T 13-10-2018 SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 SUPERFAMILY SSF47781 515 597 1.84E-13 T 13-10-2018 IPR010994 RuvA domain 2-like SJPD1_0707 15f3ee5b0354bfe0fbcc662919d9beb7 599 Gene3D G3DSA:3.40.1440.10 1 104 1.2E-31 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 SJPD1_0392 4a008985c92f30328092815c430ffc3a 275 SUPERFAMILY SSF53850 31 269 2.47E-62 T 13-10-2018 SJPD1_0392 4a008985c92f30328092815c430ffc3a 275 Pfam PF03180 NLPA lipoprotein 32 269 8.5E-73 T 13-10-2018 IPR004872 Lipoprotein NlpA family SJPD1_0392 4a008985c92f30328092815c430ffc3a 275 Gene3D G3DSA:3.40.190.10 31 255 1.4E-75 T 13-10-2018 SJPD1_0392 4a008985c92f30328092815c430ffc3a 275 Gene3D G3DSA:3.40.190.10 113 216 1.4E-75 T 13-10-2018 SJPD1_1166 a56536236beaa67704139bb249a202f9 396 Gene3D G3DSA:3.30.1330.90 10 71 3.0E-16 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 SJPD1_1166 a56536236beaa67704139bb249a202f9 396 SUPERFAMILY SSF143548 16 112 3.4E-22 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 SJPD1_1166 a56536236beaa67704139bb249a202f9 396 Pfam PF03315 Serine dehydratase beta chain 70 112 2.2E-5 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 SJPD1_1166 a56536236beaa67704139bb249a202f9 396 Pfam PF03315 Serine dehydratase beta chain 6 64 1.1E-14 T 13-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 SJPD1_1166 a56536236beaa67704139bb249a202f9 396 Pfam PF03313 Serine dehydratase alpha chain 143 392 1.6E-79 T 13-10-2018 IPR005130 Serine dehydratase-like, alpha subunit SJPD1_1166 a56536236beaa67704139bb249a202f9 396 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 71 393 1.8E-104 T 13-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 SMART SM00798 131 442 4.9E-144 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2 510 1.4E-168 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 Gene3D G3DSA:3.40.50.1380 1 193 8.1E-83 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 SMART SM00851 12 126 2.0E-52 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 SUPERFAMILY SSF53927 203 510 1.3E-107 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 SUPERFAMILY SSF52335 2 191 1.05E-66 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 Gene3D G3DSA:3.40.140.20 372 510 1.6E-53 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 PIRSF PIRSF000414 1 510 1.6E-191 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 Pfam PF01808 AICARFT/IMPCHase bienzyme 131 441 1.6E-95 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 1 510 39.001 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 Gene3D G3DSA:3.40.140.20 199 353 1.4E-55 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1809 0d1448b20562ef3bc8c61156c1c09470 510 Pfam PF02142 MGS-like domain 12 125 5.3E-25 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain SJPD1_0029 60a6058f5f8e5a0e59c5c9b4b691b4e4 264 Pfam PF01875 Memo-like protein 7 261 5.4E-47 T 13-10-2018 IPR002737 MEMO1 family Reactome: R-HSA-6785631 SJPD1_0029 60a6058f5f8e5a0e59c5c9b4b691b4e4 264 Hamap MF_00055 MEMO1 family protein . 3 264 47.608 T 13-10-2018 IPR002737 MEMO1 family Reactome: R-HSA-6785631 SJPD1_0029 60a6058f5f8e5a0e59c5c9b4b691b4e4 264 TIGRFAM TIGR04336 AmmeMemoSam_B: AmmeMemoRadiSam system protein B 5 263 3.2E-72 T 13-10-2018 SJPD1_0029 60a6058f5f8e5a0e59c5c9b4b691b4e4 264 Gene3D G3DSA:3.40.830.10 3 264 1.8E-54 T 13-10-2018 SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 92 120 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Gene3D G3DSA:1.10.530.10 69 217 3.4E-31 T 13-10-2018 SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Pfam PF01464 Transglycosylase SLT domain 78 185 4.3E-26 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 SMART SM00257 370 413 1.4E-8 T 13-10-2018 IPR018392 LysM domain SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 SMART SM00257 307 350 1.8E-8 T 13-10-2018 IPR018392 LysM domain SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 SMART SM00257 238 293 3.7 T 13-10-2018 IPR018392 LysM domain SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 SUPERFAMILY SSF53955 71 211 1.83E-33 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Gene3D G3DSA:3.10.350.10 292 365 3.4E-13 T 13-10-2018 IPR036779 LysM domain superfamily SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Pfam PF01476 LysM domain 371 413 5.2E-7 T 13-10-2018 IPR018392 LysM domain SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Pfam PF01476 LysM domain 241 269 0.091 T 13-10-2018 IPR018392 LysM domain SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Pfam PF01476 LysM domain 311 350 2.9E-10 T 13-10-2018 IPR018392 LysM domain SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 Gene3D G3DSA:3.10.350.10 369 413 1.4E-9 T 13-10-2018 IPR036779 LysM domain superfamily SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 SUPERFAMILY SSF54106 370 413 1.16E-7 T 13-10-2018 SJPD1_0811 68ef251fbf2e9c06a06c152c9c00da9d 415 SUPERFAMILY SSF54106 306 350 3.66E-8 T 13-10-2018 SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 11 227 2.5E-58 T 13-10-2018 IPR004494 MauM/NapG ferredoxin-type protein SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 Gene3D G3DSA:3.30.70.20 143 229 1.0E-9 T 13-10-2018 SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 62 73 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 Gene3D G3DSA:3.30.70.20 56 130 1.3E-9 T 13-10-2018 SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 Pfam PF12838 4Fe-4S dicluster domain 62 116 1.0E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 Pfam PF12838 4Fe-4S dicluster domain 155 208 1.5E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0875 23b099f079f74f12cc348d5e5655761d 271 SUPERFAMILY SSF54862 60 214 1.26E-22 T 13-10-2018 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 SUPERFAMILY SSF54862 75 228 1.88E-28 T 13-10-2018 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 Gene3D G3DSA:3.30.70.20 126 226 8.6E-12 T 13-10-2018 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 SUPERFAMILY SSF53706 236 663 1.15E-18 T 13-10-2018 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 4 76 6.1E-13 T 13-10-2018 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 SMART SM00929 83 123 2.1E-16 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 Gene3D G3DSA:3.10.20.740 4 124 3.1E-34 T 13-10-2018 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 209 220 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 83 121 1.4E-14 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0176 e05b4d4472ca776c6bb4e87de7ba8f4e 825 SUPERFAMILY SSF54292 4 74 1.23E-14 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 SJPD1_2012 ccb4204706d442e69db84838068fe130 226 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 35 221 5.2E-56 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 SJPD1_2012 ccb4204706d442e69db84838068fe130 226 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 226 81.083 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 SJPD1_2012 ccb4204706d442e69db84838068fe130 226 Gene3D G3DSA:2.30.210.20 6 63 3.5E-25 T 13-10-2018 SJPD1_2012 ccb4204706d442e69db84838068fe130 226 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 206 1.6E-66 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 SJPD1_2012 ccb4204706d442e69db84838068fe130 226 SUPERFAMILY SSF55729 8 220 3.88E-82 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2012 ccb4204706d442e69db84838068fe130 226 Gene3D G3DSA:3.40.630.70 64 226 2.6E-58 T 13-10-2018 SJPD1_1367 52de27fd54ecf8983f9a50745d2e51a8 195 SUPERFAMILY SSF53335 10 191 1.19E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1367 52de27fd54ecf8983f9a50745d2e51a8 195 Pfam PF03602 Conserved hypothetical protein 95 10 191 1.2E-36 T 13-10-2018 SJPD1_1367 52de27fd54ecf8983f9a50745d2e51a8 195 Gene3D G3DSA:3.40.50.150 5 195 2.0E-34 T 13-10-2018 SJPD1_1367 52de27fd54ecf8983f9a50745d2e51a8 195 PIRSF PIRSF004553 7 194 3.8E-36 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 SJPD1_1367 52de27fd54ecf8983f9a50745d2e51a8 195 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 9 191 4.2E-39 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 SJPD1_2580 b63b62033b024fdf250ddfc6f28b98dd 129 TIGRFAM TIGR00494 crcB: protein CrcB 6 118 2.8E-32 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 SJPD1_2580 b63b62033b024fdf250ddfc6f28b98dd 129 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.82 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 SJPD1_2580 b63b62033b024fdf250ddfc6f28b98dd 129 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 1.1E-21 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 SJPD1_2146 8d541adee14ff5fd8716df72b322e472 215 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 128 209 1.4E-7 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like SJPD1_2146 8d541adee14ff5fd8716df72b322e472 215 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 10 191 2.0E-59 T 13-10-2018 SJPD1_1886 f930e2780b0678a885b6ab646b5e8c7a 159 Gene3D G3DSA:3.40.1280.10 1 158 8.4E-57 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SJPD1_1886 f930e2780b0678a885b6ab646b5e8c7a 159 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 152 30.471 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 SJPD1_1886 f930e2780b0678a885b6ab646b5e8c7a 159 Pfam PF00588 SpoU rRNA Methylase family 2 143 2.8E-32 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 SJPD1_1886 f930e2780b0678a885b6ab646b5e8c7a 159 PIRSF PIRSF029256 1 154 2.4E-57 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 SJPD1_1886 f930e2780b0678a885b6ab646b5e8c7a 159 SUPERFAMILY SSF75217 1 149 5.1E-37 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases SJPD1_0997 1e2dabb5e8ce77f4ab334a9b52420da5 244 SUPERFAMILY SSF54862 51 222 1.97E-18 T 13-10-2018 SJPD1_0997 1e2dabb5e8ce77f4ab334a9b52420da5 244 Gene3D G3DSA:3.30.70.20 130 243 1.2E-8 T 13-10-2018 SJPD1_0997 1e2dabb5e8ce77f4ab334a9b52420da5 244 Pfam PF12838 4Fe-4S dicluster domain 57 111 3.8E-10 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0997 1e2dabb5e8ce77f4ab334a9b52420da5 244 Gene3D G3DSA:3.30.70.20 51 129 3.7E-13 T 13-10-2018 SJPD1_0997 1e2dabb5e8ce77f4ab334a9b52420da5 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0997 1e2dabb5e8ce77f4ab334a9b52420da5 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 210 221 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2653 dc89ee8dd8e6e5f86d56feb854f6f02e 196 Hamap MF_01405 dITP/XTP pyrophosphatase. 1 193 43.278 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 SJPD1_2653 dc89ee8dd8e6e5f86d56feb854f6f02e 196 Gene3D G3DSA:3.90.950.10 1 195 5.8E-60 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like SJPD1_2653 dc89ee8dd8e6e5f86d56feb854f6f02e 196 Pfam PF01725 Ham1 family 3 186 3.4E-48 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 SJPD1_2653 dc89ee8dd8e6e5f86d56feb854f6f02e 196 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 186 3.4E-45 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 SJPD1_2653 dc89ee8dd8e6e5f86d56feb854f6f02e 196 SUPERFAMILY SSF52972 2 189 8.63E-56 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like SJPD1_2694 7160f20d2625337c7644a782021e9d3c 432 Pfam PF12773 Double zinc ribbon 302 354 1.1E-9 T 13-10-2018 IPR025874 Double zinc ribbon SJPD1_2694 7160f20d2625337c7644a782021e9d3c 432 Pfam PF12773 Double zinc ribbon 361 404 3.4E-10 T 13-10-2018 IPR025874 Double zinc ribbon SJPD1_2694 7160f20d2625337c7644a782021e9d3c 432 SUPERFAMILY SSF117892 112 218 1.15E-5 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily SJPD1_2694 7160f20d2625337c7644a782021e9d3c 432 Pfam PF13421 SPFH domain-Band 7 family 17 235 3.0E-55 T 13-10-2018 IPR033880 SPFH domain, YdjI-like SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 SMART SM00052 331 575 2.4E-52 T 13-10-2018 IPR001633 EAL domain SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 SMART SM00448 15 128 1.2E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 Pfam PF00563 EAL domain 341 570 2.9E-60 T 13-10-2018 IPR001633 EAL domain SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 SUPERFAMILY SSF52172 13 159 7.97E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 SUPERFAMILY SSF55073 176 315 1.18E-19 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 SUPERFAMILY SSF141868 341 573 6.15E-64 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 Pfam PF00990 Diguanylate cyclase, GGDEF domain 172 315 6.4E-19 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 SMART SM00267 159 323 4.1E-9 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 Gene3D G3DSA:3.40.50.2300 13 154 7.1E-32 T 13-10-2018 SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 Gene3D G3DSA:3.30.70.270 170 335 1.2E-20 T 13-10-2018 SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 171 315 1.2E-14 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 Gene3D G3DSA:3.20.20.450 336 577 7.4E-68 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1187 20ceb29baffec7cdb44cd15b967b99fc 579 Pfam PF00072 Response regulator receiver domain 17 128 1.2E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2645 c5ac7abb8dc68bf1cf1ae897ddeac566 192 PIRSF PIRSF001296 1 189 2.2E-64 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 SJPD1_2645 c5ac7abb8dc68bf1cf1ae897ddeac566 192 Pfam PF02669 K+-transporting ATPase, c chain 5 185 2.9E-61 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 SJPD1_2645 c5ac7abb8dc68bf1cf1ae897ddeac566 192 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 186 30.746 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 SJPD1_2645 c5ac7abb8dc68bf1cf1ae897ddeac566 192 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 3 185 4.0E-58 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 SJPD1_0855 5c446ecf4cceb572d01f92241034403f 149 SUPERFAMILY SSF52821 27 139 2.12E-12 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_0855 5c446ecf4cceb572d01f92241034403f 149 SMART SM00450 35 142 5.5E-4 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_0855 5c446ecf4cceb572d01f92241034403f 149 Pfam PF00581 Rhodanese-like domain 36 136 5.7E-7 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_0855 5c446ecf4cceb572d01f92241034403f 149 Gene3D G3DSA:3.40.250.10 22 144 3.1E-12 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_0816 b7767f70a998696dd81ca52efcc995a7 154 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 16 148 6.2E-24 T 13-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 SJPD1_0816 b7767f70a998696dd81ca52efcc995a7 154 Pfam PF03968 OstA-like protein 21 131 4.1E-21 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal SJPD1_0816 b7767f70a998696dd81ca52efcc995a7 154 Gene3D G3DSA:2.60.450.10 17 153 3.2E-18 T 13-10-2018 SJPD1_0909 126b2247868d2dba94460c92a48b1560 399 Pfam PF03573 outer membrane porin, OprD family 112 398 1.4E-10 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 SJPD1_0909 126b2247868d2dba94460c92a48b1560 399 Gene3D G3DSA:2.40.160.10 32 399 8.9E-26 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_0909 126b2247868d2dba94460c92a48b1560 399 SUPERFAMILY SSF56935 100 399 3.57E-8 T 13-10-2018 SJPD1_0488 7d8901541fb205cb222bb7730a6f87e1 141 Gene3D G3DSA:2.60.40.730 10 137 1.7E-18 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 SJPD1_0488 7d8901541fb205cb222bb7730a6f87e1 141 Pfam PF01880 Desulfoferrodoxin 42 134 2.3E-14 T 13-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 SJPD1_0488 7d8901541fb205cb222bb7730a6f87e1 141 SUPERFAMILY SSF49367 34 139 6.15E-16 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 SJPD1_0934 41b54b3bda853f6df644fec197590b41 67 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 22 62 3.7E-7 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 SJPD1_0934 41b54b3bda853f6df644fec197590b41 67 SUPERFAMILY SSF57783 20 55 2.89E-5 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:3.30.70.1320 130 316 1.0E-294 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:3.30.2090.10 173 259 1.0E-294 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Pfam PF00873 AcrB/AcrD/AcrF family 1 991 2.6E-269 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:3.30.70.1440 637 832 1.0E-294 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:1.20.1640.10 490 989 1.0E-294 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82714 177 255 1.31E-10 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:3.30.70.1430 38 784 1.0E-294 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:3.30.2090.10 687 776 1.0E-294 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:1.20.1640.10 8 489 1.0E-294 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82866 280 479 8.11E-39 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82693 134 314 2.01E-15 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82693 38 129 1.66E-24 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82693 540 632 5.75E-10 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 Gene3D G3DSA:3.30.70.1430 542 636 1.0E-294 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82714 688 772 5.23E-12 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 SUPERFAMILY SSF82866 774 998 1.15E-51 T 13-10-2018 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 593 607 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 347 368 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 453 476 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 375 399 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 428 451 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 320 343 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_1675 b6a7a968a235c3be0739f80c1233ac60 1008 PRINTS PR00702 Acriflavin resistance protein family signature 527 544 1.8E-64 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2573 3f6b18c72078c247798e990d0fbcc865 593 Gene3D G3DSA:3.40.50.1980 357 583 3.8E-32 T 13-10-2018 SJPD1_2573 3f6b18c72078c247798e990d0fbcc865 593 Pfam PF04055 Radical SAM superfamily 64 218 5.6E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2573 3f6b18c72078c247798e990d0fbcc865 593 Pfam PF01497 Periplasmic binding protein 382 523 6.4E-7 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_2573 3f6b18c72078c247798e990d0fbcc865 593 SUPERFAMILY SSF53807 375 573 7.06E-31 T 13-10-2018 SJPD1_2573 3f6b18c72078c247798e990d0fbcc865 593 SUPERFAMILY SSF102114 63 330 1.35E-25 T 13-10-2018 SJPD1_2573 3f6b18c72078c247798e990d0fbcc865 593 Gene3D G3DSA:3.20.20.70 60 322 4.0E-24 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0028 fa3e5eae355dfd61923707ed4752f0e4 204 SUPERFAMILY SSF53335 6 203 1.05E-33 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0028 fa3e5eae355dfd61923707ed4752f0e4 204 Pfam PF13489 Methyltransferase domain 27 179 1.5E-16 T 13-10-2018 SJPD1_0028 fa3e5eae355dfd61923707ed4752f0e4 204 Gene3D G3DSA:3.40.50.150 1 188 2.2E-29 T 13-10-2018 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 1 199 6.4E-23 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 SUPERFAMILY SSF53067 84 202 1.38E-24 T 13-10-2018 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 205 13.89 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 Gene3D G3DSA:3.30.420.40 59 207 1.3E-47 T 13-10-2018 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 Pfam PF03309 Type III pantothenate kinase 69 162 1.7E-10 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 Gene3D G3DSA:3.30.420.40 1 58 1.6E-18 T 13-10-2018 SJPD1_0701 a59c2fa24b44f58ceb37873625b45ff8 207 SUPERFAMILY SSF53067 1 82 8.67E-28 T 13-10-2018 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 ProSitePatterns PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature. 142 163 - T 13-10-2018 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 38 189 24.753 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 SUPERFAMILY SSF143243 44 212 8.11E-47 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 63 182 7.3E-37 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 115 177 3.0E-19 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 Gene3D G3DSA:3.30.460.80 23 161 1.9E-32 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0172 9bc56ff3f2196344e6a1670d9c2ec9c2 266 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 62 180 5.9E-39 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1844 8a1e23f4d468b3a92641a306349a2914 121 Pfam PF01641 SelR domain 5 118 1.0E-44 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 SJPD1_1844 8a1e23f4d468b3a92641a306349a2914 121 Gene3D G3DSA:2.170.150.20 2 121 4.6E-47 T 13-10-2018 SJPD1_1844 8a1e23f4d468b3a92641a306349a2914 121 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 5 118 3.7E-35 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 SJPD1_1844 8a1e23f4d468b3a92641a306349a2914 121 SUPERFAMILY SSF51316 4 118 6.8E-48 T 13-10-2018 IPR011057 Mss4-like superfamily SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 SUPERFAMILY SSF69705 3 123 1.09E-24 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Gene3D G3DSA:3.30.1480.10 1 129 6.4E-21 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 SUPERFAMILY SSF54814 205 283 1.18E-25 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Gene3D G3DSA:2.40.50.140 139 203 4.2E-9 T 13-10-2018 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Gene3D G3DSA:3.30.300.20 204 282 2.4E-26 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 SUPERFAMILY SSF54814 286 343 1.5E-9 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 1 371 23.07 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Gene3D G3DSA:3.30.300.20 285 347 9.8E-18 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Pfam PF13184 NusA-like KH domain 235 303 1.7E-23 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 6.8E-101 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 SUPERFAMILY SSF50249 132 191 9.71E-7 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0537 2d76ed8ee2bf38e85037679b29e34fd2 374 Pfam PF08529 NusA N-terminal domain 4 123 2.2E-19 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 Pfam PF01676 Metalloenzyme superfamily 7 484 1.1E-68 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 496 42.997 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 7 491 8.3E-194 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 SUPERFAMILY SSF64158 79 296 9.29E-72 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 PIRSF PIRSF001492 2 496 9.0E-183 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 286 1.2E-66 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 Gene3D G3DSA:3.40.720.10 8 490 3.4E-186 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 Gene3D G3DSA:3.40.1450.10 79 299 3.4E-186 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 SJPD1_2281 6946dcb44c65b32c7816e943e53b7cbb 496 SUPERFAMILY SSF53649 7 490 2.09E-63 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 SJPD1_1942 d47f5eec1981d7952a12903a72c0a43e 124 SUPERFAMILY SSF46785 12 111 2.49E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1942 d47f5eec1981d7952a12903a72c0a43e 124 Pfam PF01638 HxlR-like helix-turn-helix 23 110 6.6E-29 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type SJPD1_1942 d47f5eec1981d7952a12903a72c0a43e 124 Gene3D G3DSA:1.10.10.10 1 119 9.1E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 SUPERFAMILY SSF52518 3 195 4.98E-47 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 Gene3D G3DSA:3.40.50.970 1 184 2.4E-44 T 13-10-2018 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 Gene3D G3DSA:3.30.70.20 547 599 7.4E-6 T 13-10-2018 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 Gene3D G3DSA:3.40.50.970 362 546 1.0E-20 T 13-10-2018 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 Gene3D G3DSA:3.40.50.920 226 331 1.6E-5 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 14 176 9.9E-7 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 SUPERFAMILY SSF52518 352 528 1.42E-29 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 SUPERFAMILY SSF54862 527 600 2.74E-9 T 13-10-2018 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 SUPERFAMILY SSF52922 234 296 4.49E-7 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 PIRSF PIRSF006439 1 603 4.0E-210 T 13-10-2018 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 SJPD1_1359 efca9ca9d89c75af2b38b934180870d5 603 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 385 514 4.2E-22 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 SJPD1_0733 d1d5eb58db1f4dbe6fd3899761465b95 445 Pfam PF02321 Outer membrane efflux protein 261 439 1.1E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_0733 d1d5eb58db1f4dbe6fd3899761465b95 445 Pfam PF02321 Outer membrane efflux protein 22 240 6.6E-12 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_0733 d1d5eb58db1f4dbe6fd3899761465b95 445 Gene3D G3DSA:1.20.1600.10 16 445 1.1E-51 T 13-10-2018 SJPD1_0733 d1d5eb58db1f4dbe6fd3899761465b95 445 SUPERFAMILY SSF56954 3 439 2.62E-54 T 13-10-2018 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 SMART SM00870 25 344 8.2E-144 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 PIRSF PIRSF001220 20 350 1.6E-92 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 Gene3D G3DSA:3.40.50.1170 21 236 2.8E-89 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 PIRSF PIRSF500176 22 350 1.5E-80 T 13-10-2018 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 6 350 1.2E-138 T 13-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 PRINTS PR00139 Asparaginase/glutaminase family signature 284 302 1.9E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 PRINTS PR00139 Asparaginase/glutaminase family signature 105 123 1.9E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 1.9E-23 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 106 116 - T 13-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 SUPERFAMILY SSF53774 24 349 8.77E-104 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 13-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 Gene3D G3DSA:3.40.50.40 237 348 1.1E-40 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 SJPD1_2501 a799d0667060436494b3cb3e6f648daf 350 Pfam PF00710 Asparaginase, N-terminal 26 217 3.1E-62 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 SJPD1_2561 ec1131e5efa948ec355d8737fa42067c 665 Pfam PF07715 TonB-dependent Receptor Plug Domain 37 139 3.1E-21 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_2561 ec1131e5efa948ec355d8737fa42067c 665 Gene3D G3DSA:2.40.170.20 148 665 8.5E-71 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_2561 ec1131e5efa948ec355d8737fa42067c 665 Gene3D G3DSA:2.170.130.10 36 147 5.1E-27 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_2561 ec1131e5efa948ec355d8737fa42067c 665 Pfam PF00593 TonB dependent receptor 190 664 1.6E-44 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_2561 ec1131e5efa948ec355d8737fa42067c 665 SUPERFAMILY SSF56935 36 665 5.13E-104 T 13-10-2018 SJPD1_2561 ec1131e5efa948ec355d8737fa42067c 665 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 648 665 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site SJPD1_1195 885ff5b26bbf3233d6939d7669719814 169 SMART SM00318 19 159 1.2E-8 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 SJPD1_1195 885ff5b26bbf3233d6939d7669719814 169 Gene3D G3DSA:2.40.50.90 18 163 1.6E-25 T 13-10-2018 IPR035437 SNase-like, OB-fold superfamily SJPD1_1195 885ff5b26bbf3233d6939d7669719814 169 Pfam PF00565 Staphylococcal nuclease homologue 44 158 1.1E-15 T 13-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 SJPD1_1195 885ff5b26bbf3233d6939d7669719814 169 SUPERFAMILY SSF50199 21 159 4.05E-22 T 13-10-2018 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 SMART SM00388 130 196 2.2E-4 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 Pfam PF00672 HAMP domain 80 125 2.0E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 SUPERFAMILY SSF47384 113 193 4.71E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 SUPERFAMILY SSF158472 78 126 2.62E-8 T 13-10-2018 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 Gene3D G3DSA:1.10.287.130 80 196 1.7E-21 T 13-10-2018 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 SMART SM00304 76 129 7.1E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1202 797cbb594d013a2c8f7f2f29ecb0123d 226 Pfam PF00512 His Kinase A (phospho-acceptor) domain 132 190 2.0E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Gene3D G3DSA:3.30.420.40 193 347 1.6E-101 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Gene3D G3DSA:3.90.640.10 231 294 1.6E-101 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Pfam PF14450 Cell division protein FtsA 203 369 3.4E-19 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 SUPERFAMILY SSF53067 4 211 2.87E-51 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 SUPERFAMILY SSF53067 195 373 2.41E-36 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 SMART SM00842 5 192 5.9E-87 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Pfam PF14450 Cell division protein FtsA 7 191 1.6E-11 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Hamap MF_02033 Cell division protein FtsA [ftsA]. 1 456 27.558 T 13-10-2018 IPR020823 Cell division protein FtsA SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Pfam PF02491 SHS2 domain inserted in FTSA 80 158 3.2E-24 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Gene3D G3DSA:3.30.420.40 8 367 1.6E-101 T 13-10-2018 SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 PIRSF PIRSF003101 1 456 2.4E-112 T 13-10-2018 IPR020823 Cell division protein FtsA SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 5 373 5.3E-133 T 13-10-2018 IPR020823 Cell division protein FtsA SJPD1_1796 631bc9fde1072b0d3ce9b0745c8b0345 456 Gene3D G3DSA:3.30.1490.110 80 165 1.6E-101 T 13-10-2018 SJPD1_2875 3f53b2a22f41640b3a5c74c3a6dc6f56 367 Gene3D G3DSA:3.40.50.2000 185 346 3.8E-33 T 13-10-2018 SJPD1_2875 3f53b2a22f41640b3a5c74c3a6dc6f56 367 Pfam PF00534 Glycosyl transferases group 1 201 346 1.0E-26 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 SJPD1_2875 3f53b2a22f41640b3a5c74c3a6dc6f56 367 SUPERFAMILY SSF53756 5 362 3.43E-51 T 13-10-2018 SJPD1_0563 6721edec7d3aada0c5f9903b939af069 166 PRINTS PR00162 Rieske 2Fe-2S subunit signature 124 136 3.3E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_0563 6721edec7d3aada0c5f9903b939af069 166 PRINTS PR00162 Rieske 2Fe-2S subunit signature 112 124 3.3E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_0563 6721edec7d3aada0c5f9903b939af069 166 PRINTS PR00162 Rieske 2Fe-2S subunit signature 91 102 3.3E-7 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_0563 6721edec7d3aada0c5f9903b939af069 166 SUPERFAMILY SSF50022 45 152 3.14E-21 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_0563 6721edec7d3aada0c5f9903b939af069 166 Pfam PF00355 Rieske [2Fe-2S] domain 62 139 1.8E-10 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 SJPD1_0563 6721edec7d3aada0c5f9903b939af069 166 Gene3D G3DSA:2.102.10.10 38 151 2.8E-21 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_0865 8ee514eefc818abc672a8fa847a5adeb 300 Pfam PF01040 UbiA prenyltransferase family 23 259 7.4E-33 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 SJPD1_0865 8ee514eefc818abc672a8fa847a5adeb 300 PIRSF PIRSF005355 1 299 4.7E-80 T 13-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 SJPD1_0865 8ee514eefc818abc672a8fa847a5adeb 300 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 6 294 18.549 T 13-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 SJPD1_0865 8ee514eefc818abc672a8fa847a5adeb 300 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 15 290 1.4E-35 T 13-10-2018 SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 SUPERFAMILY SSF53335 77 373 1.39E-58 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 SUPERFAMILY SSF88697 2 72 2.31E-12 T 13-10-2018 IPR015947 PUA-like superfamily SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 SMART SM00359 2 86 3.0E-10 T 13-10-2018 IPR002478 PUA domain GO:0003723 SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 Gene3D G3DSA:3.40.50.150 178 390 2.0E-58 T 13-10-2018 SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 Gene3D G3DSA:2.30.130.10 1 70 4.7E-16 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 Gene3D G3DSA:3.30.750.80 71 176 1.5E-34 T 13-10-2018 SJPD1_2788 f3392850b44bede7ef2a8c940df0675f 390 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 134 349 2.2E-18 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 478 495 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 SUPERFAMILY SSF50692 634 763 4.97E-29 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 27 4.3E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 SUPERFAMILY SSF53706 45 578 1.44E-131 T 13-10-2018 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Gene3D G3DSA:3.40.50.740 102 563 1.6E-123 T 13-10-2018 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Gene3D G3DSA:3.40.228.10 184 373 1.6E-123 T 13-10-2018 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 SMART SM00926 44 98 4.8E-12 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Pfam PF00384 Molybdopterin oxidoreductase 101 537 1.2E-93 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Pfam PF01568 Molydopterin dinucleotide binding domain 642 752 2.4E-23 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 45 97 3.8E-13 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Gene3D G3DSA:2.20.25.90 38 101 2.8E-17 T 13-10-2018 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 Gene3D G3DSA:2.40.40.20 630 763 1.1E-36 T 13-10-2018 SJPD1_0305 0546b17c9e4dd902474eb441992a8864 763 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 49 66 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 SJPD1_1345 29d1d2434653474bf4b321da24eae32e 485 Gene3D G3DSA:2.20.200.10 107 359 1.1E-103 T 13-10-2018 SJPD1_1345 29d1d2434653474bf4b321da24eae32e 485 Pfam PF02321 Outer membrane efflux protein 71 259 3.6E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1345 29d1d2434653474bf4b321da24eae32e 485 Pfam PF02321 Outer membrane efflux protein 290 468 1.1E-14 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1345 29d1d2434653474bf4b321da24eae32e 485 SUPERFAMILY SSF56954 14 471 1.57E-79 T 13-10-2018 SJPD1_1345 29d1d2434653474bf4b321da24eae32e 485 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 19 470 3.6E-81 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 SJPD1_1345 29d1d2434653474bf4b321da24eae32e 485 Gene3D G3DSA:1.20.1600.10 60 471 1.1E-103 T 13-10-2018 SJPD1_0399 ab797180dfb68f818799d766d8573f87 256 Pfam PF02274 Amidinotransferase 20 252 5.2E-18 T 13-10-2018 SJPD1_0399 ab797180dfb68f818799d766d8573f87 256 SUPERFAMILY SSF55909 20 252 2.36E-50 T 13-10-2018 SJPD1_0399 ab797180dfb68f818799d766d8573f87 256 Gene3D G3DSA:3.75.10.10 2 250 2.9E-66 T 13-10-2018 SJPD1_2305 564776171489b08017a8e22108d849c9 259 Gene3D G3DSA:3.40.190.10 27 237 5.5E-18 T 13-10-2018 SJPD1_2305 564776171489b08017a8e22108d849c9 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 224 1.7E-13 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_2305 564776171489b08017a8e22108d849c9 259 SUPERFAMILY SSF53850 23 253 9.19E-24 T 13-10-2018 SJPD1_2305 564776171489b08017a8e22108d849c9 259 Gene3D G3DSA:3.40.190.10 107 207 5.5E-18 T 13-10-2018 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Gene3D G3DSA:1.20.1480.50 148 236 1.0E-7 T 13-10-2018 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 SMART SM00304 178 230 1.9E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 SMART SM00267 239 411 2.5E-67 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Gene3D G3DSA:1.20.120.30 697 795 3.9E-6 T 13-10-2018 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Pfam PF13682 Chemoreceptor zinc-binding domain 703 766 1.6E-8 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 SUPERFAMILY SSF55073 255 412 1.41E-51 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 410 2.6E-43 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Gene3D G3DSA:3.20.20.450 427 679 1.1E-87 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Pfam PF00672 HAMP domain 178 227 3.6E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Gene3D G3DSA:3.30.70.270 244 425 1.3E-59 T 13-10-2018 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Pfam PF00563 EAL domain 429 662 2.6E-69 T 13-10-2018 IPR001633 EAL domain SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 SUPERFAMILY SSF141868 429 676 5.49E-81 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 Pfam PF00990 Diguanylate cyclase, GGDEF domain 250 406 4.0E-49 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 SUPERFAMILY SSF158472 178 228 5.75E-8 T 13-10-2018 SJPD1_1084 c1809aaf08e1db166e5ce2e71e20b4db 812 SMART SM00052 422 667 1.0E-92 T 13-10-2018 IPR001633 EAL domain SJPD1_1186 6396ebac1db01808101158fad5564d03 231 Gene3D G3DSA:3.40.50.2300 1 130 3.7E-25 T 13-10-2018 SJPD1_1186 6396ebac1db01808101158fad5564d03 231 Gene3D G3DSA:1.10.10.10 131 230 1.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1186 6396ebac1db01808101158fad5564d03 231 SMART SM00448 5 116 1.1E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1186 6396ebac1db01808101158fad5564d03 231 SUPERFAMILY SSF52172 4 176 3.56E-28 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1186 6396ebac1db01808101158fad5564d03 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 226 3.2E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1186 6396ebac1db01808101158fad5564d03 231 SMART SM00862 155 226 3.9E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1186 6396ebac1db01808101158fad5564d03 231 Pfam PF00072 Response regulator receiver domain 8 114 2.7E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1718 eda72a2aeae6b02ed075cb71eac1684a 343 SMART SM00471 176 312 3.3E-11 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1718 eda72a2aeae6b02ed075cb71eac1684a 343 SUPERFAMILY SSF109604 163 342 3.37E-28 T 13-10-2018 SJPD1_1718 eda72a2aeae6b02ed075cb71eac1684a 343 Gene3D G3DSA:1.10.3210.10 12 343 6.1E-59 T 13-10-2018 SJPD1_1718 eda72a2aeae6b02ed075cb71eac1684a 343 Pfam PF01966 HD domain 182 302 1.8E-16 T 13-10-2018 IPR006674 HD domain SJPD1_1718 eda72a2aeae6b02ed075cb71eac1684a 343 TIGRFAM TIGR00277 HDIG: HDIG domain 180 271 2.6E-11 T 13-10-2018 IPR006675 HDIG domain SJPD1_1694 818e03f5caf7a393c21d3588152716a2 261 SMART SM00267 85 260 3.7E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1694 818e03f5caf7a393c21d3588152716a2 261 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 93 258 3.9E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1694 818e03f5caf7a393c21d3588152716a2 261 SUPERFAMILY SSF55073 101 259 2.59E-44 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1694 818e03f5caf7a393c21d3588152716a2 261 Gene3D G3DSA:3.30.70.270 91 260 6.2E-50 T 13-10-2018 SJPD1_1694 818e03f5caf7a393c21d3588152716a2 261 Pfam PF00990 Diguanylate cyclase, GGDEF domain 96 255 1.1E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1624 6770c015170bed252e587bad64fe4cef 237 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 77 113 8.7E-5 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1624 6770c015170bed252e587bad64fe4cef 237 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 123 156 3.5E-9 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1624 6770c015170bed252e587bad64fe4cef 237 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 10 172 2.2E-67 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 SJPD1_1624 6770c015170bed252e587bad64fe4cef 237 Gene3D G3DSA:2.160.10.10 72 199 1.6E-34 T 13-10-2018 SJPD1_1624 6770c015170bed252e587bad64fe4cef 237 SUPERFAMILY SSF51161 6 181 2.5E-50 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_1624 6770c015170bed252e587bad64fe4cef 237 Gene3D G3DSA:1.10.3130.10 2 71 3.8E-16 T 13-10-2018 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 Gene3D G3DSA:3.90.700.10 234 323 9.8E-130 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 SUPERFAMILY SSF51905 2 402 1.44E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 SUPERFAMILY SSF46977 415 536 1.44E-28 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 424 507 5.6E-23 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 Gene3D G3DSA:1.20.58.100 395 507 1.2E-26 T 13-10-2018 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 SUPERFAMILY SSF56425 224 328 5.38E-35 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 Gene3D G3DSA:3.50.50.60 4 378 9.8E-130 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 Pfam PF00890 FAD binding domain 4 367 1.8E-90 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1316 62922540d1fcecd9969b0556f87e8340 545 PIRSF PIRSF000171 1 536 8.5E-42 T 13-10-2018 SJPD1_2335 3e56cbd56b4b91928156f967a7b9bf47 110 Pfam PF08780 Nucleotidyltransferase substrate binding protein like 5 105 1.1E-33 T 13-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 SJPD1_2335 3e56cbd56b4b91928156f967a7b9bf47 110 Gene3D G3DSA:1.20.120.330 1 108 2.6E-33 T 13-10-2018 SJPD1_2335 3e56cbd56b4b91928156f967a7b9bf47 110 SUPERFAMILY SSF81593 5 104 1.02E-33 T 13-10-2018 SJPD1_2335 3e56cbd56b4b91928156f967a7b9bf47 110 TIGRFAM TIGR01987 HI0074: nucleotidyltransferase substrate binding protein, HI0074 family 7 105 1.8E-27 T 13-10-2018 IPR010235 Nucleotidyltransferase substrate binding protein, HI0074 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 Gene3D G3DSA:1.10.287.10 1 89 1.0E-31 T 13-10-2018 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 Pfam PF00312 Ribosomal protein S15 8 88 3.9E-35 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 SUPERFAMILY SSF47060 4 89 3.53E-32 T 13-10-2018 IPR009068 S15/NS1, RNA-binding SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.093 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 SMART SM01387 8 88 4.7E-47 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 4.0E-28 T 13-10-2018 SJPD1_1724 1b8b649c0a69bab781d310a104c729ea 92 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 88 3.3E-35 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2423 0c2806ec89ff0969619e57a640ad345f 118 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 8 118 22.966 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2423 0c2806ec89ff0969619e57a640ad345f 118 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 11 117 2.2E-36 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2423 0c2806ec89ff0969619e57a640ad345f 118 Gene3D G3DSA:3.30.420.100 7 117 3.7E-30 T 13-10-2018 SJPD1_2423 0c2806ec89ff0969619e57a640ad345f 118 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 9 116 8.0E-36 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2423 0c2806ec89ff0969619e57a640ad345f 118 SUPERFAMILY SSF53137 9 116 2.11E-37 T 13-10-2018 SJPD1_0101 35219eb4bde6762d310d5c8de650426e 92 Gene3D G3DSA:3.40.1690.10 7 91 8.6E-27 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal SJPD1_0101 35219eb4bde6762d310d5c8de650426e 92 SUPERFAMILY SSF160544 7 87 8.63E-24 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal SJPD1_0101 35219eb4bde6762d310d5c8de650426e 92 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 83 7.3E-20 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 Pfam PF13541 Subunit ChlI of Mg-chelatase 28 146 3.7E-34 T 13-10-2018 SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 SUPERFAMILY SSF54211 17 173 1.37E-21 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 Gene3D G3DSA:3.30.230.10 19 175 5.3E-8 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 17 509 9.1E-136 T 13-10-2018 IPR004482 Mg chelatase-related protein SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 SUPERFAMILY SSF52540 208 509 5.81E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 418 509 1.8E-22 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 Gene3D G3DSA:3.40.50.300 211 511 1.7E-47 T 13-10-2018 SJPD1_2673 401cf7b8991d8260c4240294c214c20c 511 Pfam PF01078 Magnesium chelatase, subunit ChlI 210 413 3.3E-79 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 Gene3D G3DSA:3.40.50.12780 195 610 2.7E-74 T 13-10-2018 SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 Gene3D G3DSA:3.30.300.30 612 710 1.6E-6 T 13-10-2018 SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 Pfam PF01553 Acyltransferase 16 137 4.4E-21 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 SUPERFAMILY SSF69593 8 180 6.93E-28 T 13-10-2018 SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 SUPERFAMILY SSF56801 199 709 4.32E-87 T 13-10-2018 SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 ProSitePatterns PS00455 Putative AMP-binding domain signature. 371 382 - T 13-10-2018 IPR020845 AMP-binding, conserved site SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 SMART SM00563 30 140 5.4E-31 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 SJPD1_2112 ee66ec195669bcd3ab4ad75322576a8f 711 Pfam PF00501 AMP-binding enzyme 215 615 1.2E-64 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_2697 a2dc075c1360a41d87171e7c5e2603e6 375 Gene3D G3DSA:1.10.3290.10 25 295 7.8E-43 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_2697 a2dc075c1360a41d87171e7c5e2603e6 375 SUPERFAMILY SSF140931 97 299 8.89E-35 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_2697 a2dc075c1360a41d87171e7c5e2603e6 375 Pfam PF02661 Fic/DOC family 115 221 4.2E-17 T 13-10-2018 IPR003812 Fido domain SJPD1_2697 a2dc075c1360a41d87171e7c5e2603e6 375 Pfam PF13776 Domain of unknown function (DUF4172) 4 85 5.0E-24 T 13-10-2018 IPR025230 Domain of unknown function DUF4172 SJPD1_1970 3ebecdf96b2f272bde318903fd9f5ef6 251 SMART SM00382 30 207 4.7E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1970 3ebecdf96b2f272bde318903fd9f5ef6 251 Pfam PF00005 ABC transporter 21 157 3.1E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1970 3ebecdf96b2f272bde318903fd9f5ef6 251 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1970 3ebecdf96b2f272bde318903fd9f5ef6 251 SUPERFAMILY SSF52540 4 224 8.04E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1970 3ebecdf96b2f272bde318903fd9f5ef6 251 Gene3D G3DSA:3.40.50.300 1 249 1.5E-66 T 13-10-2018 SJPD1_0693 4c9d88d61b6027ecb128c4ac6cd035d6 155 Pfam PF01475 Ferric uptake regulator family 23 142 7.1E-38 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 SJPD1_0693 4c9d88d61b6027ecb128c4ac6cd035d6 155 Gene3D G3DSA:1.10.10.10 6 97 4.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0693 4c9d88d61b6027ecb128c4ac6cd035d6 155 SUPERFAMILY SSF46785 15 147 2.58E-35 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0693 4c9d88d61b6027ecb128c4ac6cd035d6 155 Gene3D G3DSA:3.30.1490.190 98 153 1.7E-21 T 13-10-2018 SJPD1_0005 bd39831bf092a0802d5d231a3060d26a 131 Gene3D G3DSA:3.30.1130.10 12 130 1.9E-37 T 13-10-2018 SJPD1_0005 bd39831bf092a0802d5d231a3060d26a 131 PIRSF PIRSF027377 1 130 3.3E-49 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 SJPD1_0005 bd39831bf092a0802d5d231a3060d26a 131 TIGRFAM TIGR03139 QueF-II: 7-cyano-7-deazaguanine reductase 15 123 3.1E-38 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 SJPD1_0005 bd39831bf092a0802d5d231a3060d26a 131 SUPERFAMILY SSF55620 11 116 1.41E-30 T 13-10-2018 SJPD1_0005 bd39831bf092a0802d5d231a3060d26a 131 Pfam PF14489 QueF-like protein 47 124 7.6E-31 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 SJPD1_0005 bd39831bf092a0802d5d231a3060d26a 131 Hamap MF_00818 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 131 45.178 T 13-10-2018 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Gene3D G3DSA:3.30.70.1050 1 115 3.6E-20 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 SUPERFAMILY SSF54534 134 252 4.32E-27 T 13-10-2018 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Gene3D G3DSA:3.10.50.40 152 251 9.4E-71 T 13-10-2018 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 TIGRFAM TIGR00115 tig: trigger factor 12 427 8.4E-104 T 13-10-2018 IPR005215 Trigger factor GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 SUPERFAMILY SSF109998 255 431 3.34E-28 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Hamap MF_00303 Trigger factor [tig]. 1 432 18.62 T 13-10-2018 IPR005215 Trigger factor GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 PIRSF PIRSF003095 1 432 2.3E-96 T 13-10-2018 IPR005215 Trigger factor GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 159 241 5.4E-12 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Gene3D G3DSA:1.10.3120.10 116 430 9.4E-71 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Pfam PF05697 Bacterial trigger factor protein (TF) 1 145 8.1E-28 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 270 428 1.1E-28 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 SJPD1_2669 6694e03137918cab1e01b92e9a8787a6 432 SUPERFAMILY SSF102735 1 129 1.05E-23 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 SJPD1_0079 344e8e27381453f8dba0ce6f3d99371c 527 Gene3D G3DSA:3.90.1640.30 29 290 4.3E-79 T 13-10-2018 SJPD1_0079 344e8e27381453f8dba0ce6f3d99371c 527 Gene3D G3DSA:3.10.310.30 291 410 2.8E-30 T 13-10-2018 SJPD1_0079 344e8e27381453f8dba0ce6f3d99371c 527 Pfam PF02272 DHHA1 domain 288 398 4.0E-20 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 SJPD1_0079 344e8e27381453f8dba0ce6f3d99371c 527 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 16 522 1.2E-157 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 SJPD1_0079 344e8e27381453f8dba0ce6f3d99371c 527 SUPERFAMILY SSF64182 30 411 4.58E-104 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily SJPD1_0079 344e8e27381453f8dba0ce6f3d99371c 527 Pfam PF01368 DHH family 55 182 3.5E-10 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 Pfam PF00027 Cyclic nucleotide-binding domain 28 109 1.9E-17 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 Gene3D G3DSA:1.10.10.10 144 212 1.3E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 Gene3D G3DSA:2.60.120.10 2 139 1.1E-29 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 SUPERFAMILY SSF46785 145 211 1.12E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 SUPERFAMILY SSF51206 3 137 3.93E-31 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 Pfam PF13545 Crp-like helix-turn-helix domain 148 210 3.2E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 SMART SM00419 154 204 1.8E-7 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0844 c1663e25059090ece479f02f14b29a8c 212 SMART SM00100 9 127 1.4E-16 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 Gene3D G3DSA:2.160.20.10 40 367 4.5E-74 T 13-10-2018 IPR012334 Pectin lyase fold SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 71 145 2.1E-21 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 SMART SM00912 37 149 2.8E-33 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 Gene3D G3DSA:2.160.20.110 457 631 3.3E-41 T 13-10-2018 SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 Pfam PF07581 The GLUG motif 621 644 2.8E-4 T 13-10-2018 IPR011493 GLUG SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 Pfam PF07581 The GLUG motif 540 563 9.6E-4 T 13-10-2018 IPR011493 GLUG SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 Pfam PF07581 The GLUG motif 594 617 6.3E-4 T 13-10-2018 IPR011493 GLUG SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 SUPERFAMILY SSF51126 37 319 8.47E-47 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor SJPD1_0837 c0c23a1fbd343ec5c662af8ee97dcd34 1032 Pfam PF05860 haemagglutination activity domain 41 148 5.6E-22 T 13-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 Gene3D G3DSA:3.40.50.150 80 271 2.2E-51 T 13-10-2018 SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 24 265 2.5E-66 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 11 268 2.5E-66 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 SUPERFAMILY SSF53335 4 255 4.76E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 Gene3D G3DSA:1.10.8.10 1 79 1.7E-18 T 13-10-2018 SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 Pfam PF05175 Methyltransferase small domain 104 190 1.3E-16 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 SJPD1_1799 bc67757eb45fc314da7fbaa3f7f02b15 271 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 181 187 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 Pfam PF13183 4Fe-4S dicluster domain 147 221 5.0E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 Gene3D G3DSA:1.10.1060.10 107 239 8.3E-45 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 230 1.6E-50 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 151 162 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 57 65 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 SUPERFAMILY SSF54292 2 106 2.75E-25 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 6 111 2.6E-29 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 SUPERFAMILY SSF46548 109 236 3.49E-25 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0507 b9b43980d2228f9df1bf1da05f8f0627 239 Gene3D G3DSA:3.10.20.30 1 106 2.6E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 401 34.542 T 13-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 PRINTS PR00173 Glutamate-aspartate symporter signature 184 203 9.9E-14 T 13-10-2018 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 PRINTS PR00173 Glutamate-aspartate symporter signature 11 31 9.9E-14 T 13-10-2018 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 PRINTS PR00173 Glutamate-aspartate symporter signature 219 238 9.9E-14 T 13-10-2018 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 PRINTS PR00173 Glutamate-aspartate symporter signature 321 340 9.9E-14 T 13-10-2018 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 PRINTS PR00173 Glutamate-aspartate symporter signature 286 312 9.9E-14 T 13-10-2018 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 Gene3D G3DSA:1.10.3860.10 3 399 9.7E-65 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 SUPERFAMILY SSF118215 13 396 1.83E-86 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 SJPD1_2355 fd9363afdf097b350c8d95fde3d51b38 402 Pfam PF00375 Sodium:dicarboxylate symporter family 13 394 1.3E-59 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 3 745 20.441 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Gene3D G3DSA:2.40.160.50 419 745 3.6E-72 T 13-10-2018 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Pfam PF01103 Surface antigen 442 745 3.8E-62 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Pfam PF07244 Surface antigen variable number repeat 87 163 1.5E-11 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Pfam PF07244 Surface antigen variable number repeat 280 339 1.8E-7 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Pfam PF07244 Surface antigen variable number repeat 168 258 2.3E-5 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Pfam PF07244 Surface antigen variable number repeat 343 414 1.3E-12 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 PIRSF PIRSF006076 1 745 4.6E-197 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Gene3D G3DSA:3.10.20.310 260 342 9.4E-12 T 13-10-2018 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Gene3D G3DSA:3.10.20.310 86 167 7.0E-13 T 13-10-2018 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Gene3D G3DSA:3.10.20.310 344 418 4.7E-21 T 13-10-2018 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Gene3D G3DSA:3.10.20.310 18 85 1.2E-11 T 13-10-2018 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 Gene3D G3DSA:3.10.20.310 169 259 1.9E-13 T 13-10-2018 SJPD1_0274 6471895676c9a05b13612a42b181f123 745 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 20 745 1.1E-193 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 SJPD1_1425 a352379e39cd75e2fed0478ee5b5d75a 377 SUPERFAMILY SSF52922 268 376 1.31E-23 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_1425 a352379e39cd75e2fed0478ee5b5d75a 377 Gene3D G3DSA:3.40.50.970 1 191 5.7E-65 T 13-10-2018 SJPD1_1425 a352379e39cd75e2fed0478ee5b5d75a 377 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 276 367 1.6E-22 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II SJPD1_1425 a352379e39cd75e2fed0478ee5b5d75a 377 Gene3D G3DSA:3.40.50.920 267 377 1.4E-23 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_1425 a352379e39cd75e2fed0478ee5b5d75a 377 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 16 243 3.0E-63 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 SJPD1_1425 a352379e39cd75e2fed0478ee5b5d75a 377 SUPERFAMILY SSF52518 6 260 2.94E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1284 d00603a2de324f745ad98da60be477df 303 TIGRFAM TIGR01287 nifH: nitrogenase iron protein 5 291 2.5E-126 T 13-10-2018 IPR005977 Nitrogenase iron protein NifH GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 SUPERFAMILY SSF52540 5 286 8.82E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1284 d00603a2de324f745ad98da60be477df 303 Gene3D G3DSA:3.40.50.300 3 291 6.4E-62 T 13-10-2018 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 PIRSF PIRSF000363 3 292 1.4E-111 T 13-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 ProSitePatterns PS00746 NifH/frxC family signature 1. 102 114 - T 13-10-2018 IPR030655 NifH/chlL conserved site SJPD1_1284 d00603a2de324f745ad98da60be477df 303 PRINTS PR00091 Nitrogenase component II signature 100 114 3.5E-37 T 13-10-2018 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 PRINTS PR00091 Nitrogenase component II signature 33 48 3.5E-37 T 13-10-2018 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 PRINTS PR00091 Nitrogenase component II signature 10 23 3.5E-37 T 13-10-2018 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 PRINTS PR00091 Nitrogenase component II signature 139 154 3.5E-37 T 13-10-2018 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 Pfam PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family 5 288 3.2E-123 T 13-10-2018 IPR000392 NifH/frxC family GO:0005524|GO:0016491|GO:0055114 SJPD1_1284 d00603a2de324f745ad98da60be477df 303 ProSitePatterns PS00692 NifH/frxC family signature 2. 140 153 - T 13-10-2018 IPR030655 NifH/chlL conserved site SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 316 4.4E-15 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 634 652 - T 13-10-2018 IPR028299 ClpA/B, conserved site 2 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Gene3D G3DSA:3.40.50.300 553 764 3.8E-86 T 13-10-2018 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 765 844 5.5E-23 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 SUPERFAMILY SSF81923 6 156 1.9E-27 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 SMART SM00382 199 344 2.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 SMART SM00382 600 747 4.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Gene3D G3DSA:3.40.50.300 343 547 6.3E-62 T 13-10-2018 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 711 725 3.8E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 604 622 3.8E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 667 3.8E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 678 696 3.8E-41 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Gene3D G3DSA:3.40.50.300 150 342 1.8E-71 T 13-10-2018 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 SMART SM01086 765 854 8.5E-32 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Gene3D G3DSA:1.10.1780.10 4 149 5.5E-26 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 599 759 3.1E-55 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Gene3D G3DSA:1.10.8.60 765 857 4.1E-24 T 13-10-2018 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 13-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 SUPERFAMILY SSF52540 549 852 2.34E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 21 69 0.0046 T 13-10-2018 IPR004176 Clp, N-terminal SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 97 146 2.2E-4 T 13-10-2018 IPR004176 Clp, N-terminal SJPD1_1766 269ddca05fab0fa92b70a041b5ac037c 857 SUPERFAMILY SSF52540 160 548 3.93E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2099 8ea13fe6b1c1d4bbc7a87684dbdffa62 319 Gene3D G3DSA:3.60.15.10 44 318 1.7E-84 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_2099 8ea13fe6b1c1d4bbc7a87684dbdffa62 319 PIRSF PIRSF038896 4 316 2.4E-91 T 13-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 SJPD1_2099 8ea13fe6b1c1d4bbc7a87684dbdffa62 319 Pfam PF12706 Beta-lactamase superfamily domain 85 278 2.6E-42 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_2099 8ea13fe6b1c1d4bbc7a87684dbdffa62 319 SUPERFAMILY SSF56281 52 295 1.24E-38 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 6.5E-49 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.588 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 PRINTS PR00060 Ribosomal protein L16 signature 24 36 3.9E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 PRINTS PR00060 Ribosomal protein L16 signature 42 53 3.9E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 PRINTS PR00060 Ribosomal protein L16 signature 88 117 3.9E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 PRINTS PR00060 Ribosomal protein L16 signature 58 87 3.9E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 Gene3D G3DSA:3.90.1170.10 1 141 5.3E-54 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 SUPERFAMILY SSF54686 1 138 8.11E-56 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 13-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2431 cc11faf564a1bfc4a831c37ef50c6d74 141 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 1.1E-57 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 Gene3D G3DSA:1.10.238.10 1 120 2.6E-16 T 13-10-2018 SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 Pfam PF13499 EF-hand domain pair 45 103 1.3E-9 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 ProSitePatterns PS00018 EF-hand calcium-binding domain. 47 59 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 SUPERFAMILY SSF47473 26 111 1.15E-13 T 13-10-2018 IPR011992 EF-hand domain pair SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 SMART SM00054 79 107 0.0032 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 SMART SM00054 38 66 1.8 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2490 fef61b1a3bd05cb7f3f2d5486270596f 154 ProSitePatterns PS00018 EF-hand calcium-binding domain. 88 100 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 36 101 9.4E-17 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 306 369 1.2E-6 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Gene3D G3DSA:3.90.480.10 44 361 2.2E-83 T 13-10-2018 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 SUPERFAMILY SSF55124 243 394 1.8E-13 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 432 448 - T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 112 262 7.5E-36 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 SUPERFAMILY SSF55124 6 108 1.8E-25 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Pfam PF01206 Sulfurtransferase TusA 686 752 1.7E-16 T 13-10-2018 IPR001455 TusA-like domain SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Gene3D G3DSA:3.30.413.10 382 556 4.2E-33 T 13-10-2018 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Gene3D G3DSA:3.30.413.10 111 296 2.2E-83 T 13-10-2018 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 SUPERFAMILY SSF56014 382 545 3.27E-26 T 13-10-2018 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 PRINTS PR00397 Sirohaem Fe-binding site signature 383 401 1.1E-5 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 PRINTS PR00397 Sirohaem Fe-binding site signature 432 450 1.1E-5 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 SUPERFAMILY SSF56014 112 267 3.53E-42 T 13-10-2018 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 SUPERFAMILY SSF64307 686 752 3.27E-17 T 13-10-2018 IPR036868 TusA-like domain superfamily SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 386 522 7.9E-11 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 SJPD1_2763 5215fc1a32fbd6ad8c65946f214ccb7c 753 Gene3D G3DSA:3.30.110.40 684 752 3.7E-17 T 13-10-2018 IPR036868 TusA-like domain superfamily SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 175 20.787 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 SMART SM00739 121 148 0.0019 T 13-10-2018 IPR005824 KOW SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 Gene3D G3DSA:2.30.30.30 117 175 6.9E-23 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 PRINTS PR00338 Transcription termination factor NUSG signature 151 167 1.5E-15 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 1.5E-15 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 PRINTS PR00338 Transcription termination factor NUSG signature 133 148 1.5E-15 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 SUPERFAMILY SSF50104 119 175 4.96E-16 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 Pfam PF02357 Transcription termination factor nusG 4 106 7.0E-21 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 158 167 - T 13-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 175 1.9E-60 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 SUPERFAMILY SSF82679 3 111 4.45E-30 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 Gene3D G3DSA:3.30.70.940 1 116 9.9E-35 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 SJPD1_0435 33f98d2be65a0225af23de36b64ffa1e 176 SMART SM00738 2 110 8.0E-38 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 SJPD1_2718 e4224d3a417b9af0f06e4a91291770e0 544 SMART SM00283 268 543 1.6E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2718 e4224d3a417b9af0f06e4a91291770e0 544 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 362 508 3.1E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2718 e4224d3a417b9af0f06e4a91291770e0 544 Gene3D G3DSA:1.10.287.950 215 544 1.5E-55 T 13-10-2018 SJPD1_2718 e4224d3a417b9af0f06e4a91291770e0 544 SUPERFAMILY SSF58104 235 543 2.35E-53 T 13-10-2018 SJPD1_0191 383eec0f9c0d8c8c2703dc5b25f879d1 170 Pfam PF08447 PAS fold 30 113 3.0E-11 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0191 383eec0f9c0d8c8c2703dc5b25f879d1 170 Gene3D G3DSA:3.30.450.20 9 119 1.0E-18 T 13-10-2018 SJPD1_0191 383eec0f9c0d8c8c2703dc5b25f879d1 170 SUPERFAMILY SSF55785 20 115 8.86E-22 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0191 383eec0f9c0d8c8c2703dc5b25f879d1 170 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 111 2.4E-9 T 13-10-2018 IPR000014 PAS domain SJPD1_0552 d08537e2a1f0c98476ddd47e8d6d9ca3 558 SMART SM00382 37 179 1.1E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0552 d08537e2a1f0c98476ddd47e8d6d9ca3 558 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 300 1.2E-124 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 SJPD1_0552 d08537e2a1f0c98476ddd47e8d6d9ca3 558 SUPERFAMILY SSF52540 33 225 3.69E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0552 d08537e2a1f0c98476ddd47e8d6d9ca3 558 Gene3D G3DSA:3.40.50.300 13 177 9.8E-101 T 13-10-2018 SJPD1_0552 d08537e2a1f0c98476ddd47e8d6d9ca3 558 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.8E-45 T 13-10-2018 SJPD1_0552 d08537e2a1f0c98476ddd47e8d6d9ca3 558 Gene3D G3DSA:1.10.8.60 9 240 9.8E-101 T 13-10-2018 SJPD1_1821 bb668bcb8f4d7ba864649b73000a79e1 147 Gene3D G3DSA:3.40.50.620 1 147 7.3E-34 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1821 bb668bcb8f4d7ba864649b73000a79e1 147 Pfam PF00582 Universal stress protein family 1 147 9.2E-29 T 13-10-2018 IPR006016 UspA SJPD1_1821 bb668bcb8f4d7ba864649b73000a79e1 147 SUPERFAMILY SSF52402 2 147 1.59E-32 T 13-10-2018 SJPD1_1821 bb668bcb8f4d7ba864649b73000a79e1 147 PRINTS PR01438 Universal stress protein signature 107 119 1.9E-18 T 13-10-2018 IPR006015 Universal stress protein A SJPD1_1821 bb668bcb8f4d7ba864649b73000a79e1 147 PRINTS PR01438 Universal stress protein signature 125 147 1.9E-18 T 13-10-2018 IPR006015 Universal stress protein A SJPD1_1821 bb668bcb8f4d7ba864649b73000a79e1 147 PRINTS PR01438 Universal stress protein signature 2 20 1.9E-18 T 13-10-2018 IPR006015 Universal stress protein A SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 ProSitePatterns PS00892 HIT domain signature. 82 100 - T 13-10-2018 IPR019808 Histidine triad, conserved site SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 SUPERFAMILY SSF54197 2 106 4.02E-31 T 13-10-2018 IPR036265 HIT-like superfamily SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 Gene3D G3DSA:3.30.428.10 1 104 1.1E-33 T 13-10-2018 IPR036265 HIT-like superfamily SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 PRINTS PR00332 Histidine triad family signature 89 99 5.5E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 PRINTS PR00332 Histidine triad family signature 3 19 5.5E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 PRINTS PR00332 Histidine triad family signature 24 42 5.5E-19 T 13-10-2018 IPR001310 Histidine triad (HIT) protein SJPD1_0725 94d5567f59cf6e2cffdc161147da5f39 130 Pfam PF01230 HIT domain 10 101 8.7E-27 T 13-10-2018 IPR001310 Histidine triad (HIT) protein SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Pfam PF12631 MnmE helical domain 92 414 6.6E-39 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Gene3D G3DSA:1.20.120.430 90 417 3.8E-86 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Pfam PF10396 GTP-binding protein TrmE N-terminus 14 89 5.3E-26 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Gene3D G3DSA:3.40.50.300 186 346 3.8E-86 T 13-10-2018 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Gene3D G3DSA:3.30.1360.120 2 89 2.7E-28 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 PRINTS PR00449 Transforming protein P21 ras signature 349 371 4.3E-7 T 13-10-2018 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 PRINTS PR00449 Transforming protein P21 ras signature 186 207 4.3E-7 T 13-10-2018 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 PRINTS PR00449 Transforming protein P21 ras signature 294 307 4.3E-7 T 13-10-2018 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 3 417 26.34 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 Pfam PF01926 50S ribosome-binding GTPase 187 304 1.0E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 SUPERFAMILY SSF52540 41 324 3.08E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 18 417 1.1E-108 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 SJPD1_1754 1e1da7fad6ceeb13a9376ba3d3c86113 417 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 185 314 3.2E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 Gene3D G3DSA:1.10.10.10 125 214 2.1E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 SUPERFAMILY SSF52172 1 118 6.26E-27 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 Pfam PF00072 Response regulator receiver domain 3 111 5.5E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 Gene3D G3DSA:3.40.50.2300 1 121 1.8E-28 T 13-10-2018 SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 SMART SM00862 142 212 5.0E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 Pfam PF00486 Transcriptional regulatory protein, C terminal 143 212 7.4E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 SUPERFAMILY SSF46894 127 212 2.3E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_2503 fad6f61ed386498c48d84bf2b5ba2f41 215 SMART SM00448 1 111 8.6E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0349 434a9f4318a83def3dc0359796d8b14c 244 SUPERFAMILY SSF102405 8 211 2.44E-54 T 13-10-2018 SJPD1_0349 434a9f4318a83def3dc0359796d8b14c 244 Gene3D G3DSA:3.40.50.450 9 244 1.4E-61 T 13-10-2018 SJPD1_0349 434a9f4318a83def3dc0359796d8b14c 244 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 38 212 3.3E-43 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG SJPD1_0349 434a9f4318a83def3dc0359796d8b14c 244 Pfam PF03641 Possible lysine decarboxylase 80 211 6.2E-33 T 13-10-2018 IPR031100 LOG family SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SUPERFAMILY SSF50341 496 600 1.31E-23 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 496 1.8E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SMART SM00073 4 101 3.5E-27 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SMART SM01231 241 309 1.3E-17 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Pfam PF01584 CheW-like domain 501 599 2.1E-17 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 242 309 2.0E-17 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Gene3D G3DSA:3.30.565.10 310 496 2.6E-58 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SUPERFAMILY SSF55874 311 495 7.73E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Gene3D G3DSA:1.10.287.560 241 309 4.4E-21 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Gene3D G3DSA:1.20.120.160 1 141 5.4E-36 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 451 3.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 413 3.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 457 475 3.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 494 3.8E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Gene3D G3DSA:2.30.30.40 497 601 4.1E-28 T 13-10-2018 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SUPERFAMILY SSF47226 4 113 7.33E-30 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SMART SM00387 354 497 2.0E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SUPERFAMILY SSF47384 242 310 8.24E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 SMART SM00260 489 599 1.4E-16 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Gene3D G3DSA:2.40.50.180 520 583 4.1E-28 T 13-10-2018 SJPD1_0237 32f5ff4deb32106050fc9f32e38f7955 601 Pfam PF01627 Hpt domain 6 105 3.6E-16 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 Gene3D G3DSA:3.40.50.300 159 332 4.0E-41 T 13-10-2018 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 Pfam PF01926 50S ribosome-binding GTPase 160 269 4.2E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 SUPERFAMILY SSF52540 150 358 1.86E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 13-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 Hamap MF_01454 GTPase Obg [obg]. 1 359 44.666 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 Pfam PF01018 GTP1/OBG 3 157 1.5E-56 T 13-10-2018 IPR006169 GTP1/OBG domain SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 182 200 7.8E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 7.8E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 161 181 7.8E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 7.8E-35 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 2 323 7.6E-126 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 SUPERFAMILY SSF82051 1 157 1.18E-52 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 PIRSF PIRSF002401 1 333 8.8E-126 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type SJPD1_0614 23d028a8d6dcc48b2353981e6eb9c84c 368 Gene3D G3DSA:2.70.210.12 1 157 1.7E-55 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily SJPD1_0929 eec7b45a86c08f513f76e5c2946f98c0 277 Gene3D G3DSA:3.30.70.120 192 267 1.4E-16 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal SJPD1_0929 eec7b45a86c08f513f76e5c2946f98c0 277 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 223 274 1.9E-14 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 SJPD1_0929 eec7b45a86c08f513f76e5c2946f98c0 277 PIRSF PIRSF006483 1 277 8.6E-74 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT SJPD1_0929 eec7b45a86c08f513f76e5c2946f98c0 277 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 7 214 7.4E-54 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 Pfam PF13183 4Fe-4S dicluster domain 147 218 8.8E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 3 110 5.0E-23 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 6 227 1.1E-51 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 SUPERFAMILY SSF54292 2 105 5.51E-18 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 51 59 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 SUPERFAMILY SSF46548 107 235 4.71E-22 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 Gene3D G3DSA:1.10.1060.10 107 237 3.9E-29 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0841 457eb3378eb750af9d5cccb3052dc383 319 Gene3D G3DSA:3.10.20.30 1 105 6.4E-24 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 348 415 6.2E-23 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 SUPERFAMILY SSF52540 106 311 9.24E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 234 261 7.7E-42 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 168 182 7.7E-42 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 200 214 7.7E-42 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 138 158 7.7E-42 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 396 415 7.7E-42 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Gene3D G3DSA:3.40.50.300 91 266 2.5E-53 T 13-10-2018 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 437 29.718 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Gene3D G3DSA:3.30.300.180 2 80 1.1E-15 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 ProSitePatterns PS01008 DnaA protein signature. 396 415 - T 13-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 SMART SM00382 137 263 8.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 5 436 8.1E-151 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 SUPERFAMILY SSF48295 334 436 2.88E-29 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Pfam PF11638 DnaA N-terminal domain 5 64 4.5E-9 T 13-10-2018 IPR024633 DnaA N-terminal domain SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Gene3D G3DSA:1.10.1750.10 338 441 8.4E-28 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Pfam PF00308 Bacterial dnaA protein 105 319 4.6E-86 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 Gene3D G3DSA:1.10.8.60 269 337 6.2E-22 T 13-10-2018 SJPD1_0001 a1a4619f7953c8f0e448d6bd48db3370 441 SMART SM00760 346 415 4.3E-30 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 PRINTS PR00313 NodO calcium binding signature 146 154 3.9E-8 T 13-10-2018 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 PRINTS PR00313 NodO calcium binding signature 155 163 3.9E-8 T 13-10-2018 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 PRINTS PR00313 NodO calcium binding signature 164 173 3.9E-8 T 13-10-2018 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 PRINTS PR00313 NodO calcium binding signature 134 145 3.9E-8 T 13-10-2018 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Gene3D G3DSA:2.150.10.10 119 281 5.9E-22 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 136 153 0.01 T 13-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 190 200 49.0 T 13-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 155 170 0.0051 T 13-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 123 135 24.0 T 13-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 142 160 - T 13-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Pfam PF13946 Domain of unknown function (DUF4214) 225 259 3.3E-6 T 13-10-2018 IPR025282 Domain of unknown function DUF4214 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 Pfam PF13946 Domain of unknown function (DUF4214) 258 329 2.4E-23 T 13-10-2018 IPR025282 Domain of unknown function DUF4214 SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 SUPERFAMILY SSF51120 108 217 9.55E-17 T 13-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal SJPD1_0935 9b792efa0ac7cd6f3270f865818e5c53 345 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 151 169 - T 13-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 Gene3D G3DSA:1.10.287.950 300 566 3.9E-44 T 13-10-2018 SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 SMART SM00283 375 567 3.1E-9 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 Pfam PF08269 Cache domain 50 201 4.1E-39 T 13-10-2018 IPR004010 Double Cache domain 2 SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 Gene3D G3DSA:3.30.450.20 44 203 9.3E-50 T 13-10-2018 SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 SMART SM01049 45 144 7.9E-25 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 SUPERFAMILY SSF58104 374 565 3.27E-44 T 13-10-2018 SJPD1_0778 2ef5231ec848d38516ead965cf5ecb26 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 443 563 1.0E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 SMART SM00448 1 109 5.9E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 SMART SM00382 156 299 3.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 Gene3D G3DSA:1.10.8.60 309 386 1.4E-22 T 13-10-2018 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 Pfam PF00072 Response regulator receiver domain 3 110 2.3E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 160 173 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 Pfam PF00158 Sigma-54 interaction domain 137 303 7.3E-70 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 SUPERFAMILY SSF52172 1 181 1.57E-31 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 SUPERFAMILY SSF52540 135 377 2.22E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 Gene3D G3DSA:3.40.50.2300 1 124 3.3E-27 T 13-10-2018 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 222 237 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 SJPD1_0366 8a0a65dd87c789476b6bd93f3f2f1e4e 387 Gene3D G3DSA:3.40.50.300 125 307 3.7E-64 T 13-10-2018 SJPD1_2133 a7a12db395877bebb8312eaceef0af34 290 Pfam PF04055 Radical SAM superfamily 9 113 1.1E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2133 a7a12db395877bebb8312eaceef0af34 290 SUPERFAMILY SSF102114 4 284 2.75E-28 T 13-10-2018 SJPD1_2133 a7a12db395877bebb8312eaceef0af34 290 Pfam PF13186 Iron-sulfur cluster-binding domain 216 282 3.3E-11 T 13-10-2018 IPR023885 4Fe4S-binding SPASM domain SJPD1_1222 5b234fa7aa9c49c25b08589b776ffd17 447 SUPERFAMILY SSF53822 143 369 3.06E-6 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 SUPERFAMILY SSF141072 299 398 1.31E-18 T 13-10-2018 IPR038081 CalX-like domain superfamily SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 Gene3D G3DSA:2.60.40.2030 287 399 6.6E-18 T 13-10-2018 IPR038081 CalX-like domain superfamily SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 Pfam PF03160 Calx-beta domain 312 372 3.9E-13 T 13-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 SUPERFAMILY SSF50494 21 274 7.21E-22 T 13-10-2018 IPR009003 Peptidase S1, PA clan SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 SMART SM00237 271 374 0.0028 T 13-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 Gene3D G3DSA:2.40.10.10 35 275 8.4E-19 T 13-10-2018 SJPD1_2881 8a0b85482e99fdcec113e328033447a4 400 Pfam PF00089 Trypsin 25 235 1.4E-12 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 SJPD1_1255 810dd00d37a82a962677a0f627ad9e20 170 Gene3D G3DSA:3.40.630.30 1 170 6.7E-54 T 13-10-2018 SJPD1_1255 810dd00d37a82a962677a0f627ad9e20 170 SUPERFAMILY SSF55729 1 162 1.54E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_1255 810dd00d37a82a962677a0f627ad9e20 170 Pfam PF13420 Acetyltransferase (GNAT) domain 2 153 2.1E-29 T 13-10-2018 SJPD1_1255 810dd00d37a82a962677a0f627ad9e20 170 PIRSF PIRSF037663 1 147 3.8E-11 T 13-10-2018 IPR017255 Acetyltransferase, GNAT, predicted SJPD1_0920 f13d9778097d8e8ae8bae30928297884 205 Pfam PF01810 LysE type translocator 12 201 2.6E-34 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_0920 f13d9778097d8e8ae8bae30928297884 205 PIRSF PIRSF006324 2 204 2.2E-49 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_0477 a80dc655a643ab6334d85e065178e79c 172 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 39 147 3.6E-23 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0477 a80dc655a643ab6334d85e065178e79c 172 Gene3D G3DSA:3.40.50.12280 4 169 3.1E-68 T 13-10-2018 SJPD1_0477 a80dc655a643ab6334d85e065178e79c 172 SUPERFAMILY SSF56770 12 155 1.06E-61 T 13-10-2018 SJPD1_0477 a80dc655a643ab6334d85e065178e79c 172 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 3 153 41.203 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0477 a80dc655a643ab6334d85e065178e79c 172 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 13 150 1.9E-65 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 Gene3D G3DSA:1.10.287.950 289 620 1.9E-59 T 13-10-2018 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 435 552 2.5E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 Gene3D G3DSA:3.30.450.20 51 262 1.8E-36 T 13-10-2018 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 Gene3D G3DSA:3.30.450.20 62 171 1.8E-36 T 13-10-2018 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 SUPERFAMILY SSF58104 311 619 1.96E-57 T 13-10-2018 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 Pfam PF02743 Cache domain 35 248 8.4E-21 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 SMART SM00304 289 343 1.4E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2403 2dd016f55a589877ca98797798ba40bd 620 SMART SM00283 344 619 6.0E-38 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 PIRSF PIRSF000171 41 614 2.1E-42 T 13-10-2018 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 395 417 4.0E-6 T 13-10-2018 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 50 69 4.0E-6 T 13-10-2018 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 Gene3D G3DSA:3.50.50.60 49 443 5.0E-137 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 49 616 4.9E-194 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 SUPERFAMILY SSF56425 272 390 9.57E-38 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 SUPERFAMILY SSF46977 486 616 9.29E-35 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 SUPERFAMILY SSF51905 37 455 7.42E-69 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 Pfam PF00890 FAD binding domain 49 432 4.0E-94 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 Pfam PF02910 Fumarate reductase flavoprotein C-term 490 616 7.6E-30 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 Gene3D G3DSA:1.20.58.100 462 577 1.6E-24 T 13-10-2018 SJPD1_0840 3868e09fe0cdf2aa4dcc78d15a6d940c 616 Gene3D G3DSA:3.90.700.10 281 385 5.0E-137 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 Pfam PF02602 Uroporphyrinogen-III synthase HemD 267 460 8.6E-17 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 215 1.4E-41 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 PIRSF PIRSF036426 1 255 1.5E-91 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 Gene3D G3DSA:3.30.950.10 120 268 2.3E-46 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 SUPERFAMILY SSF69618 252 461 6.02E-23 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 Gene3D G3DSA:3.40.1010.10 2 119 2.2E-37 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 239 2.0E-85 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 SUPERFAMILY SSF53790 1 254 4.32E-69 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_1540 53aaaa80b8d68e2e5c4d267652212ac7 505 Gene3D G3DSA:3.40.50.10090 295 385 1.1E-13 T 13-10-2018 SJPD1_1207 9f203ddbb4bd025728ec87fc4a9c8ac0 208 Pfam PF00005 ABC transporter 18 158 5.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1207 9f203ddbb4bd025728ec87fc4a9c8ac0 208 SUPERFAMILY SSF52540 2 207 3.44E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1207 9f203ddbb4bd025728ec87fc4a9c8ac0 208 SMART SM00382 27 206 9.6E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1207 9f203ddbb4bd025728ec87fc4a9c8ac0 208 Gene3D G3DSA:3.40.50.300 1 208 5.7E-59 T 13-10-2018 SJPD1_1207 9f203ddbb4bd025728ec87fc4a9c8ac0 208 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1533 a9067633bd924218e726e3952943ea50 372 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 12 361 29.365 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 SJPD1_1533 a9067633bd924218e726e3952943ea50 372 PIRSF PIRSF026782 8 365 4.7E-115 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 SJPD1_1533 a9067633bd924218e726e3952943ea50 372 Pfam PF01888 CbiD 12 270 4.8E-90 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 SJPD1_1533 a9067633bd924218e726e3952943ea50 372 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 20 357 3.2E-88 T 13-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 SJPD1_1533 a9067633bd924218e726e3952943ea50 372 Gene3D G3DSA:3.30.2110.10 14 184 3.6E-48 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 SJPD1_1533 a9067633bd924218e726e3952943ea50 372 SUPERFAMILY SSF111342 3 288 2.75E-83 T 13-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 SJPD1_1769 72038b48ef220e0f7303bf88d55bd6fe 81 SUPERFAMILY SSF82697 1 77 6.45E-29 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_1769 72038b48ef220e0f7303bf88d55bd6fe 81 Gene3D G3DSA:3.30.1280.10 1 80 7.2E-31 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 SJPD1_1769 72038b48ef220e0f7303bf88d55bd6fe 81 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 2 77 2.4E-32 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1769 72038b48ef220e0f7303bf88d55bd6fe 81 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 1 78 1.2E-30 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1769 72038b48ef220e0f7303bf88d55bd6fe 81 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 9 77 7.0E-21 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1769 72038b48ef220e0f7303bf88d55bd6fe 81 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 1 78 21.098 T 13-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_2828 77eee921619d2176e227454a470c3c32 381 SUPERFAMILY SSF110738 1 373 6.93E-117 T 13-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 SJPD1_2828 77eee921619d2176e227454a470c3c32 381 Gene3D G3DSA:3.90.1510.10 42 276 4.8E-131 T 13-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 SJPD1_2828 77eee921619d2176e227454a470c3c32 381 PIRSF PIRSF006078 1 378 7.9E-133 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 SJPD1_2828 77eee921619d2176e227454a470c3c32 381 Gene3D G3DSA:3.40.50.10350 2 356 4.8E-131 T 13-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold SJPD1_2828 77eee921619d2176e227454a470c3c32 381 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 5.4E-139 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 SJPD1_2828 77eee921619d2176e227454a470c3c32 381 Pfam PF02595 Glycerate kinase family 3 374 5.1E-136 T 13-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 SJPD1_0475 5b69ce409ee3ad35b7a5b98a58b474e1 159 PIRSF PIRSF000216 1 159 2.3E-58 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0475 5b69ce409ee3ad35b7a5b98a58b474e1 159 Gene3D G3DSA:3.40.30.10 76 159 5.0E-27 T 13-10-2018 SJPD1_0475 5b69ce409ee3ad35b7a5b98a58b474e1 159 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 17 157 1.9E-50 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0475 5b69ce409ee3ad35b7a5b98a58b474e1 159 Gene3D G3DSA:1.10.10.1590 4 75 6.1E-23 T 13-10-2018 SJPD1_0475 5b69ce409ee3ad35b7a5b98a58b474e1 159 SUPERFAMILY SSF52833 6 157 1.06E-49 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0475 5b69ce409ee3ad35b7a5b98a58b474e1 159 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 16 157 5.7E-54 T 13-10-2018 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 Gene3D G3DSA:1.10.10.60 5 55 5.8E-18 T 13-10-2018 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 Gene3D G3DSA:1.10.357.10 56 199 6.5E-12 T 13-10-2018 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 SUPERFAMILY SSF48498 81 181 2.18E-6 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 SUPERFAMILY SSF46689 3 84 1.49E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 4.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 4.8E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 1.1E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1672 823878a1af2b5b6b8f5c74ebcfa19e1b 207 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 13-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 Gene3D G3DSA:3.10.20.580 533 663 2.5E-16 T 13-10-2018 SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 466 516 5.4E-10 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 SMART SM00849 127 323 2.5E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 Gene3D G3DSA:3.40.50.10710 315 473 1.3E-165 T 13-10-2018 SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 Hamap MF_01491 Ribonuclease J [rnj]. 110 663 41.431 T 13-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 SUPERFAMILY SSF56281 115 531 2.75E-85 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 Gene3D G3DSA:3.60.15.10 116 532 1.3E-165 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 Pfam PF00753 Metallo-beta-lactamase superfamily 124 272 5.6E-11 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_0096 9e6a15728fb0476fe952a6b1570b8451 663 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 115 660 8.9E-190 T 13-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 4 57 2.5E-15 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Pfam PF01568 Molydopterin dinucleotide binding domain 577 680 4.0E-14 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Pfam PF00384 Molybdopterin oxidoreductase 61 483 2.1E-43 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 SUPERFAMILY SSF50692 577 686 6.33E-19 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Gene3D G3DSA:3.40.50.740 90 533 2.0E-114 T 13-10-2018 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Gene3D G3DSA:2.40.40.20 575 687 4.6E-17 T 13-10-2018 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 9 27 - T 13-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 SUPERFAMILY SSF53706 5 557 1.96E-133 T 13-10-2018 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 SMART SM00926 4 58 2.1E-15 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Gene3D G3DSA:2.20.25.90 4 58 1.4E-15 T 13-10-2018 SJPD1_0040 3ea6e48243c18d6a48b57f31f4b1e3cf 687 Gene3D G3DSA:3.40.228.10 159 361 2.0E-114 T 13-10-2018 SJPD1_2294 51099a6f85b46d54818378333606f5b8 367 Gene3D G3DSA:1.10.150.130 78 184 7.0E-16 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_2294 51099a6f85b46d54818378333606f5b8 367 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 109 163 8.2E-5 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 SJPD1_2294 51099a6f85b46d54818378333606f5b8 367 Pfam PF00589 Phage integrase family 217 344 2.9E-13 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_2294 51099a6f85b46d54818378333606f5b8 367 Gene3D G3DSA:1.10.443.10 188 360 3.9E-20 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_2294 51099a6f85b46d54818378333606f5b8 367 SUPERFAMILY SSF56349 83 347 8.54E-44 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 SMART SM00363 9 73 2.6E-4 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 Pfam PF01479 S4 domain 10 55 5.4E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 SUPERFAMILY SSF55120 69 295 1.69E-59 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 Gene3D G3DSA:3.30.2350.10 66 287 6.4E-57 T 13-10-2018 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 SUPERFAMILY SSF55174 9 59 4.88E-8 T 13-10-2018 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 Pfam PF00849 RNA pseudouridylate synthase 83 239 2.4E-26 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 Gene3D G3DSA:3.10.290.10 4 65 3.8E-10 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 129 143 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0789 d9e7d7e085bab0e14ba07cf51f30e464 327 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 7 295 1.7E-68 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 SUPERFAMILY SSF52172 4 171 1.38E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 Gene3D G3DSA:3.40.50.2300 3 129 6.0E-31 T 13-10-2018 SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 219 3.5E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 SMART SM00448 5 116 1.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 Pfam PF00072 Response regulator receiver domain 7 116 2.7E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 Gene3D G3DSA:1.10.10.10 130 221 2.7E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1508 56bf57e5f17337fb273e977dce554f03 223 SMART SM00862 150 219 3.3E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 SUPERFAMILY SSF46565 3 111 4.19E-32 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 Pfam PF01556 DnaJ C terminal domain 144 282 1.4E-31 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 SUPERFAMILY SSF49493 139 211 7.85E-10 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 Gene3D G3DSA:2.60.260.20 137 201 6.7E-14 T 13-10-2018 SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 SMART SM00271 3 60 5.9E-29 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 Gene3D G3DSA:2.60.260.20 203 282 3.6E-18 T 13-10-2018 SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 SUPERFAMILY SSF49493 208 286 1.24E-15 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 PRINTS PR00625 DnaJ domain signature 6 24 2.2E-27 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 PRINTS PR00625 DnaJ domain signature 24 39 2.2E-27 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 PRINTS PR00625 DnaJ domain signature 40 60 2.2E-27 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 PRINTS PR00625 DnaJ domain signature 60 79 2.2E-27 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 Pfam PF00226 DnaJ domain 5 65 1.4E-26 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 Gene3D G3DSA:1.10.287.110 1 127 1.2E-35 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1744 24fc3b607ad1a4e7dcb7c59b72e0dfaf 301 ProSitePatterns PS00636 Nt-dnaJ domain signature. 45 64 - T 13-10-2018 IPR018253 DnaJ domain, conserved site SJPD1_1312 86a9d235bcf2d5a503dd71df4161b092 348 Gene3D G3DSA:3.40.50.300 14 216 1.4E-67 T 13-10-2018 SJPD1_1312 86a9d235bcf2d5a503dd71df4161b092 348 SUPERFAMILY SSF90002 257 342 7.59E-16 T 13-10-2018 SJPD1_1312 86a9d235bcf2d5a503dd71df4161b092 348 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 344 9.4E-12 T 13-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal SJPD1_1312 86a9d235bcf2d5a503dd71df4161b092 348 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 17 198 2.3E-51 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain SJPD1_1312 86a9d235bcf2d5a503dd71df4161b092 348 SUPERFAMILY SSF52540 15 199 7.47E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1312 86a9d235bcf2d5a503dd71df4161b092 348 Gene3D G3DSA:3.30.1220.10 235 345 1.2E-25 T 13-10-2018 IPR036627 CobW-like, C-terminal domain superfamily SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 Pfam PF02913 FAD linked oxidases, C-terminal domain 216 456 1.9E-64 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 SUPERFAMILY SSF55103 219 458 1.55E-68 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 Pfam PF01565 FAD binding domain 39 178 1.3E-42 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 SUPERFAMILY SSF56176 5 216 4.35E-71 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 Gene3D G3DSA:1.10.45.10 418 457 8.1E-11 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 Gene3D G3DSA:3.30.465.40 3 235 6.7E-73 T 13-10-2018 SJPD1_1977 4b0fd78e9a87b12866c257a28bb7be4b 459 Gene3D G3DSA:3.30.70.2740 335 417 2.5E-16 T 13-10-2018 SJPD1_1300 7f96d7a22679d94525949c9f261c87f7 157 Pfam PF13247 4Fe-4S dicluster domain 56 144 4.2E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1300 7f96d7a22679d94525949c9f261c87f7 157 Gene3D G3DSA:3.30.70.20 6 154 6.8E-27 T 13-10-2018 SJPD1_1300 7f96d7a22679d94525949c9f261c87f7 157 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 91 102 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1300 7f96d7a22679d94525949c9f261c87f7 157 SUPERFAMILY SSF54862 1 155 2.86E-37 T 13-10-2018 SJPD1_1300 7f96d7a22679d94525949c9f261c87f7 157 Gene3D G3DSA:3.30.70.20 66 119 6.8E-27 T 13-10-2018 SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 Pfam PF00005 ABC transporter 18 148 8.0E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 Pfam PF12848 ABC transporter 191 267 7.2E-14 T 13-10-2018 IPR032781 ABC-transporter extension domain SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 SMART SM00382 26 200 1.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 SMART SM00382 308 475 3.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 Pfam PF00005 ABC transporter 300 430 6.5E-21 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 SUPERFAMILY SSF52540 268 485 1.18E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 Gene3D G3DSA:3.40.50.300 246 505 2.5E-51 T 13-10-2018 SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 Gene3D G3DSA:3.40.50.300 1 229 3.3E-55 T 13-10-2018 SJPD1_1336 425c127d8c0f9ee178831ae8dc55f5ec 608 SUPERFAMILY SSF52540 2 198 2.02E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 SUPERFAMILY SSF50447 151 298 3.98E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 SUPERFAMILY SSF54980 396 509 1.01E-26 T 13-10-2018 IPR035647 EF-G domain III/V-like SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Pfam PF00679 Elongation factor G C-terminus 394 479 3.6E-22 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 145 8.3E-25 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Gene3D G3DSA:2.40.30.10 200 297 5.4E-29 T 13-10-2018 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Gene3D G3DSA:3.40.50.300 1 197 4.2E-66 T 13-10-2018 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Gene3D G3DSA:3.30.70.870 305 587 8.0E-123 T 13-10-2018 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 PRINTS PR00315 GTP-binding elongation factor signature 122 131 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 PRINTS PR00315 GTP-binding elongation factor signature 86 97 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 PRINTS PR00315 GTP-binding elongation factor signature 50 58 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 PRINTS PR00315 GTP-binding elongation factor signature 70 80 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 SMART SM00838 393 481 0.0078 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Pfam PF00009 Elongation factor Tu GTP binding domain 3 194 1.6E-54 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Pfam PF03144 Elongation factor Tu domain 2 218 287 3.5E-12 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Gene3D G3DSA:3.30.70.240 387 479 8.0E-123 T 13-10-2018 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 Gene3D G3DSA:2.40.50.250 480 596 8.0E-123 T 13-10-2018 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 4 596 1.3E-283 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 SUPERFAMILY SSF52540 3 205 4.86E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 SUPERFAMILY SSF54980 302 385 3.02E-9 T 13-10-2018 IPR035647 EF-G domain III/V-like SJPD1_2893 2baf0c9a17d37ac2daa8794eb0d9116d 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 43 58 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 161 179 1.5E-19 T 13-10-2018 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-19 T 13-10-2018 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 292 1.5E-19 T 13-10-2018 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 243 259 1.5E-19 T 13-10-2018 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 289 2.3E-55 T 13-10-2018 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 Gene3D G3DSA:3.50.50.60 6 294 5.3E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 SUPERFAMILY SSF51905 1 315 1.45E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 122 130 1.3E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 157 181 1.3E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 280 298 1.3E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 1.3E-18 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 SJPD1_1594 0648e73c22412b5ee347f42d3e70a219 317 Gene3D G3DSA:3.50.50.60 134 250 5.3E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 PIRSF PIRSF001467 3 163 6.4E-39 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 54 71 - T 13-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 Gene3D G3DSA:2.40.100.10 15 164 9.0E-53 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 SUPERFAMILY SSF50891 19 153 5.7E-48 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 152 9.7E-41 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 127 142 7.0E-22 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 59 71 7.0E-22 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 126 7.0E-22 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 33 48 7.0E-22 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_1183 e996b86420ceefb87ff04a9efedbe823 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 7.0E-22 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0907 64bb10f3f497527b93207ae260e7edce 416 SUPERFAMILY SSF81342 11 289 3.45E-81 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_0907 64bb10f3f497527b93207ae260e7edce 416 SUPERFAMILY SSF81648 241 389 1.83E-35 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_0907 64bb10f3f497527b93207ae260e7edce 416 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 287 396 2.6E-28 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_0907 64bb10f3f497527b93207ae260e7edce 416 Pfam PF00033 Cytochrome b/b6/petB 29 215 4.7E-58 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_0907 64bb10f3f497527b93207ae260e7edce 416 Gene3D G3DSA:1.20.810.10 2 416 7.6E-128 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 SJPD1_0526 4f98e2d3bd5c9e71a25ab13e0e4cce75 278 SMART SM00892 64 263 5.9E-49 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 SJPD1_0526 4f98e2d3bd5c9e71a25ab13e0e4cce75 278 SUPERFAMILY SSF54060 43 272 2.88E-53 T 13-10-2018 SJPD1_0526 4f98e2d3bd5c9e71a25ab13e0e4cce75 278 SMART SM00477 65 263 4.2E-44 T 13-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 SJPD1_0526 4f98e2d3bd5c9e71a25ab13e0e4cce75 278 Gene3D G3DSA:3.40.570.10 44 274 1.8E-58 T 13-10-2018 SJPD1_0526 4f98e2d3bd5c9e71a25ab13e0e4cce75 278 Pfam PF01223 DNA/RNA non-specific endonuclease 64 262 7.2E-38 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 Gene3D G3DSA:3.40.1690.10 214 352 2.5E-58 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 5 350 4.9E-127 T 13-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 8 30 1.0E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 299 320 1.0E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 225 242 1.0E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 269 284 1.0E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 205 223 1.0E-40 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 SUPERFAMILY SSF160544 241 347 3.01E-41 T 13-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal SJPD1_0284 ffb038921ade793e2a3579d80aa1f0cd 352 Pfam PF01312 FlhB HrpN YscU SpaS Family 5 344 2.0E-121 T 13-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 SJPD1_2835 7d96031c4feb9e337134894cb1e0e93b 190 Gene3D G3DSA:3.90.550.10 6 189 1.2E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2835 7d96031c4feb9e337134894cb1e0e93b 190 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 4 186 20.584 T 13-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 SJPD1_2835 7d96031c4feb9e337134894cb1e0e93b 190 Pfam PF12804 MobA-like NTP transferase domain 9 160 2.5E-22 T 13-10-2018 IPR025877 MobA-like NTP transferase SJPD1_2835 7d96031c4feb9e337134894cb1e0e93b 190 SUPERFAMILY SSF53448 6 186 2.12E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 SUPERFAMILY SSF46785 3 112 2.51E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.6E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.6E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.6E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 Gene3D G3DSA:3.40.190.290 94 300 2.1E-15 T 13-10-2018 SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 Gene3D G3DSA:1.10.10.10 4 70 1.1E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.9E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 Pfam PF03466 LysR substrate binding domain 96 296 1.5E-18 T 13-10-2018 IPR005119 LysR, substrate-binding SJPD1_2866 ccdef38ca4eeca80e175bf2c2410f724 303 SUPERFAMILY SSF53850 93 293 8.87E-21 T 13-10-2018 SJPD1_0852 145591696ba941f2f912cd0b70b4640a 209 Pfam PF01810 LysE type translocator 16 207 3.4E-34 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_0852 145591696ba941f2f912cd0b70b4640a 209 PIRSF PIRSF006324 1 209 1.6E-50 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1200 e78663cc4cc0176ff9d8fe09068446ce 562 SUPERFAMILY SSF51735 399 539 1.12E-25 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1200 e78663cc4cc0176ff9d8fe09068446ce 562 Pfam PF00999 Sodium/hydrogen exchanger family 10 374 5.3E-64 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SJPD1_1200 e78663cc4cc0176ff9d8fe09068446ce 562 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 13 285 3.7E-73 T 13-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 SJPD1_1200 e78663cc4cc0176ff9d8fe09068446ce 562 Gene3D G3DSA:3.40.50.720 398 562 4.0E-31 T 13-10-2018 SJPD1_1200 e78663cc4cc0176ff9d8fe09068446ce 562 Pfam PF02254 TrkA-N domain 403 516 1.7E-18 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SJPD1_1200 e78663cc4cc0176ff9d8fe09068446ce 562 Gene3D G3DSA:1.20.1530.20 2 386 7.4E-80 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 411 6.4E-102 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 Pfam PF04055 Radical SAM superfamily 137 296 3.6E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 6 400 1.4E-119 T 13-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 Pfam PF00919 Uncharacterized protein family UPF0004 3 89 9.3E-19 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 136 156 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 SUPERFAMILY SSF102114 112 354 1.7E-44 T 13-10-2018 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 Gene3D G3DSA:3.80.30.20 130 358 1.2E-58 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 SMART SM00729 132 345 4.4E-39 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_1658 4030324b377a3e8ec451245b13cc34b5 414 Gene3D G3DSA:3.40.50.12160 2 123 3.0E-16 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily SJPD1_1688 9de5da50cfcc60da50ac0302214259fd 298 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 182 194 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site SJPD1_1688 9de5da50cfcc60da50ac0302214259fd 298 Gene3D G3DSA:1.10.600.10 1 298 1.8E-89 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily SJPD1_1688 9de5da50cfcc60da50ac0302214259fd 298 SUPERFAMILY SSF48576 25 283 1.31E-67 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily SJPD1_1688 9de5da50cfcc60da50ac0302214259fd 298 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 64 78 - T 13-10-2018 IPR033749 Polyprenyl synthetase, conserved site SJPD1_1688 9de5da50cfcc60da50ac0302214259fd 298 Pfam PF00348 Polyprenyl synthetase 28 248 3.5E-59 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 SJPD1_2363 1f1e625bd9e2ab5c21cde5fbb043ac05 502 PIRSF PIRSF002457 2 501 1.5E-125 T 13-10-2018 IPR030676 Citrate carrier CitT-related SJPD1_2363 1f1e625bd9e2ab5c21cde5fbb043ac05 502 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 24 495 3.8E-70 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_2363 1f1e625bd9e2ab5c21cde5fbb043ac05 502 Pfam PF00939 Sodium:sulfate symporter transmembrane region 9 500 3.7E-108 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 Gene3D G3DSA:3.30.70.20 163 215 1.1E-6 T 13-10-2018 SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 183 194 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 129 140 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 50 61 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 Pfam PF12800 4Fe-4S binding domain 127 140 0.24 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 SUPERFAMILY SSF54862 30 211 1.19E-23 T 13-10-2018 SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 Gene3D G3DSA:3.30.70.20 43 93 3.1E-7 T 13-10-2018 SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 Pfam PF00037 4Fe-4S binding domain 176 198 1.0E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 Gene3D G3DSA:3.30.70.20 94 153 2.2E-8 T 13-10-2018 SJPD1_1517 b2ae06370dd32a414e4665a4063965a8 215 Pfam PF12838 4Fe-4S dicluster domain 49 107 9.8E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0729 991eaaf48e38c21a9402c10f0e10ab64 277 Gene3D G3DSA:3.40.50.11270 12 92 2.0E-89 T 13-10-2018 SJPD1_0729 991eaaf48e38c21a9402c10f0e10ab64 277 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 275 1.9E-94 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 SJPD1_0729 991eaaf48e38c21a9402c10f0e10ab64 277 Pfam PF02401 LytB protein 3 272 3.3E-86 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 SJPD1_0729 991eaaf48e38c21a9402c10f0e10ab64 277 Gene3D G3DSA:3.40.1010.20 93 186 2.0E-89 T 13-10-2018 SJPD1_0729 991eaaf48e38c21a9402c10f0e10ab64 277 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 276 31.707 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 SJPD1_0729 991eaaf48e38c21a9402c10f0e10ab64 277 Gene3D G3DSA:3.40.1010.20 3 272 2.0E-89 T 13-10-2018 SJPD1_1256 91e581ae49016f0ed0cab4057282156e 132 Gene3D G3DSA:3.10.180.10 3 132 9.0E-48 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase SJPD1_1256 91e581ae49016f0ed0cab4057282156e 132 SUPERFAMILY SSF54593 6 126 9.13E-27 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase SJPD1_1256 91e581ae49016f0ed0cab4057282156e 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 120 1.9E-12 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain SJPD1_1641 c1346f7f435ac6d5c9c1c03feb68a906 187 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 15 177 2.2E-55 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SJPD1_1641 c1346f7f435ac6d5c9c1c03feb68a906 187 Gene3D G3DSA:3.20.130.10 1 178 5.2E-71 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 SJPD1_1641 c1346f7f435ac6d5c9c1c03feb68a906 187 SUPERFAMILY SSF117457 5 177 1.31E-63 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 SJPD1_1641 c1346f7f435ac6d5c9c1c03feb68a906 187 Pfam PF05683 Fumarase C-terminus 10 177 3.0E-57 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 Gene3D G3DSA:3.40.50.2300 1 130 2.2E-28 T 13-10-2018 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 Gene3D G3DSA:3.40.50.180 147 341 1.1E-69 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 Pfam PF01339 CheB methylesterase 157 333 3.2E-56 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 SMART SM00448 2 125 9.5E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 PIRSF PIRSF000876 1 341 1.7E-126 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 Pfam PF00072 Response regulator receiver domain 4 107 5.7E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 2 340 38.617 T 13-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 SUPERFAMILY SSF52172 1 108 1.71E-27 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2456 6f25e0115785f2e4ab21e6ff698dc0b9 341 SUPERFAMILY SSF52738 152 340 2.22E-68 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 SMART SM00487 25 223 7.5E-61 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 SMART SM00490 259 340 1.0E-30 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 Pfam PF00271 Helicase conserved C-terminal domain 234 340 4.8E-30 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 Gene3D G3DSA:3.40.50.300 1 210 1.2E-72 T 13-10-2018 SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 Pfam PF00270 DEAD/DEAH box helicase 31 196 6.9E-44 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 Gene3D G3DSA:3.40.50.300 214 444 4.2E-53 T 13-10-2018 SJPD1_2621 2abf9f75216044a13f628c96800098b9 596 SUPERFAMILY SSF52540 73 358 4.8E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 SUPERFAMILY SSF52540 3 231 8.48E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 Gene3D G3DSA:3.40.50.300 294 535 8.7E-60 T 13-10-2018 SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 Pfam PF00005 ABC transporter 316 460 4.1E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 Gene3D G3DSA:3.40.50.300 2 244 6.1E-50 T 13-10-2018 SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 Pfam PF00005 ABC transporter 21 165 7.2E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 SUPERFAMILY SSF52540 298 522 4.91E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 SMART SM00382 27 220 3.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1436 b853937624824806a8e8b2e19f457f85 537 SMART SM00382 323 507 1.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 11 340 4.9E-125 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 SUPERFAMILY SSF48029 125 333 9.68E-59 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 Gene3D G3DSA:1.10.220.30 100 203 4.2E-31 T 13-10-2018 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 Gene3D G3DSA:1.10.220.30 204 340 1.6E-36 T 13-10-2018 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 SUPERFAMILY SSF48029 17 110 2.17E-17 T 13-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 Pfam PF14842 FliG N-terminal domain 13 113 3.9E-29 T 13-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PIRSF PIRSF003161 8 340 1.6E-112 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 Pfam PF14841 FliG middle domain 125 198 1.9E-25 T 13-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 Gene3D G3DSA:1.10.220.30 11 93 4.8E-15 T 13-10-2018 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 Pfam PF01706 FliG C-terminal domain 228 333 2.1E-34 T 13-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 14 30 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 43 69 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 124 147 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 257 277 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 235 255 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 204 229 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_0255 efb4b085011ea7d550c78837977cb23e 341 PRINTS PR00954 Flagellar motor switch protein FliG signature 281 307 1.3E-57 T 13-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 SJPD1_2249 785423a7e706ddd7b9ca887673d8a2c5 286 SUPERFAMILY SSF53448 3 162 1.24E-14 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2249 785423a7e706ddd7b9ca887673d8a2c5 286 Pfam PF00535 Glycosyl transferase family 2 20 140 7.1E-6 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2249 785423a7e706ddd7b9ca887673d8a2c5 286 Gene3D G3DSA:3.90.550.10 2 172 1.8E-10 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 Hamap MF_01953 Urease subunit alpha [ureC]. 1 567 53.949 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 ProSitePatterns PS00145 Urease active site. 317 333 - T 13-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 334 350 4.6E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 427 440 4.6E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 295 312 4.6E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 401 416 4.6E-30 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 Gene3D G3DSA:3.20.20.140 129 548 1.1E-282 T 13-10-2018 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 Pfam PF01979 Amidohydrolase family 125 453 1.5E-71 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 SUPERFAMILY SSF51556 130 567 2.86E-189 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 ProSitePatterns PS01120 Urease nickel ligands signature. 127 140 - T 13-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 Pfam PF00449 Urease alpha-subunit, N-terminal domain 2 118 2.5E-49 T 13-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 SUPERFAMILY SSF51338 2 176 4.08E-57 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 2 567 1.6E-279 T 13-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 Gene3D G3DSA:2.30.40.10 3 480 1.1E-282 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 SJPD1_2507 7a2abe68f015422657d43d8c57a022d2 567 SUPERFAMILY SSF51338 425 477 4.03E-6 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 SJPD1_0562 93b49253eebf6a13700126f5b33ac59b 71 SUPERFAMILY SSF55174 2 66 7.07E-18 T 13-10-2018 SJPD1_0562 93b49253eebf6a13700126f5b33ac59b 71 Gene3D G3DSA:3.10.290.10 1 68 1.5E-23 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_0562 93b49253eebf6a13700126f5b33ac59b 71 Pfam PF13275 S4 domain 3 66 2.4E-22 T 13-10-2018 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Hamap MF_00054_B Elongation factor G [fusA]. 6 690 113.551 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Pfam PF03144 Elongation factor Tu domain 2 323 390 3.6E-13 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SUPERFAMILY SSF50447 265 401 3.28E-33 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Gene3D G3DSA:3.40.50.300 1 293 2.3E-112 T 13-10-2018 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 PRINTS PR00315 GTP-binding elongation factor signature 12 25 3.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 PRINTS PR00315 GTP-binding elongation factor signature 130 139 3.8E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Pfam PF14492 Elongation Factor G, domain II 403 477 1.9E-34 T 13-10-2018 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Gene3D G3DSA:3.30.70.870 405 482 2.7E-33 T 13-10-2018 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Pfam PF03764 Elongation factor G, domain IV 478 597 7.6E-49 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Gene3D G3DSA:3.30.70.240 603 673 1.2E-95 T 13-10-2018 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 691 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SUPERFAMILY SSF54980 403 480 8.27E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Gene3D G3DSA:2.40.30.10 294 404 1.9E-41 T 13-10-2018 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SMART SM00838 599 686 3.5E-61 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SUPERFAMILY SSF54980 602 689 4.6E-32 T 13-10-2018 IPR035647 EF-G domain III/V-like SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Gene3D G3DSA:3.30.230.10 483 686 1.2E-95 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Pfam PF00009 Elongation factor Tu GTP binding domain 10 281 2.3E-68 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 180 3.3E-35 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SUPERFAMILY SSF54211 478 598 1.06E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SUPERFAMILY SSF52540 6 281 6.54E-109 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 SMART SM00889 479 597 1.4E-73 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 SJPD1_0444 fe6a3fc06c9a8da75bbf76cbb8947ab8 692 Pfam PF00679 Elongation factor G C-terminus 599 685 1.5E-33 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 SUPERFAMILY SSF46906 67 139 5.36E-22 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 13-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 2.5E-19 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 Gene3D G3DSA:3.30.1550.10 2 71 3.1E-33 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 28.778 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 Gene3D G3DSA:1.10.10.250 72 139 2.5E-22 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 5.5E-60 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 SMART SM00649 9 140 2.4E-75 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 6.0E-15 T 13-10-2018 SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 SUPERFAMILY SSF54747 3 71 2.35E-29 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily SJPD1_0436 a2556ec5eb5f7d3d9a855514ab82c25d 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 1.9E-29 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal SJPD1_1924 4ea1c90b15e7dcd2a353e5cb5be505b1 125 Pfam PF07813 LTXXQ motif family protein 22 118 2.4E-6 T 13-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 SJPD1_1924 4ea1c90b15e7dcd2a353e5cb5be505b1 125 Gene3D G3DSA:1.20.120.1490 19 125 7.7E-13 T 13-10-2018 SJPD1_1757 dbef7d024dfa3a3d34a3090d9cf9d2a0 112 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 72 2.2E-22 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor SJPD1_1757 dbef7d024dfa3a3d34a3090d9cf9d2a0 112 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 18.076 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor SJPD1_1757 dbef7d024dfa3a3d34a3090d9cf9d2a0 112 Pfam PF01809 Haemolytic domain 3 67 2.7E-20 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor SJPD1_1757 dbef7d024dfa3a3d34a3090d9cf9d2a0 112 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 23 65 2.0E-10 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor SJPD1_1757 dbef7d024dfa3a3d34a3090d9cf9d2a0 112 SMART SM01234 1 68 3.7E-26 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 SUPERFAMILY SSF140931 101 296 1.7E-49 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 Pfam PF02661 Fic/DOC family 125 229 1.2E-21 T 13-10-2018 IPR003812 Fido domain SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 PIRSF PIRSF038925 12 378 4.7E-120 T 13-10-2018 IPR026287 Adenosine monophosphate-protein transferase SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 Pfam PF11972 HTH DNA binding domain 314 363 1.0E-5 T 13-10-2018 IPR021068 HTH DNA binding domain SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 Gene3D G3DSA:1.10.3290.10 60 281 8.5E-57 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 SUPERFAMILY SSF46785 314 361 4.02E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 Pfam PF13784 Fic/DOC family N-terminal 39 118 1.4E-25 T 13-10-2018 IPR025758 Fic/DOC N-terminal SJPD1_0379 bc7a14db38878138d1ae908d2926c464 378 Gene3D G3DSA:1.10.10.10 308 364 3.1E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 Pfam PF00271 Helicase conserved C-terminal domain 415 486 1.0E-5 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 Gene3D G3DSA:1.10.8.630 5 99 4.2E-8 T 13-10-2018 SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 Pfam PF00270 DEAD/DEAH box helicase 115 268 4.2E-12 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 SMART SM00490 389 486 6.7E-7 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 TIGRFAM TIGR00595 priA: primosomal protein N' 129 595 5.6E-149 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 610 19.601 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 SMART SM00487 107 291 1.1E-13 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 Gene3D G3DSA:3.40.50.300 100 282 1.2E-58 T 13-10-2018 SJPD1_1982 eb7a698487f437296e00dbaa32eac891 611 SUPERFAMILY SSF52540 123 488 9.0E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 Gene3D G3DSA:3.30.450.20 217 342 5.3E-26 T 13-10-2018 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 SMART SM01049 198 281 1.4 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 SMART SM01049 45 167 1.4E-20 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 523 646 3.1E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 SUPERFAMILY SSF58104 400 708 1.44E-58 T 13-10-2018 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 SMART SM00304 378 432 8.4E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 Gene3D G3DSA:1.10.287.950 378 709 3.9E-61 T 13-10-2018 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 SMART SM00283 440 708 5.5E-51 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 Pfam PF08269 Cache domain 38 336 6.9E-67 T 13-10-2018 IPR004010 Double Cache domain 2 SJPD1_2649 115bb7157eb8b30782d4000d917be951 709 Gene3D G3DSA:3.30.450.20 78 216 1.4E-32 T 13-10-2018 SJPD1_0147 309e0cae7b98a01b5f91cee7fc707eee 387 Gene3D G3DSA:3.40.50.2300 149 281 2.6E-85 T 13-10-2018 SJPD1_0147 309e0cae7b98a01b5f91cee7fc707eee 387 Gene3D G3DSA:3.40.50.2300 37 347 2.6E-85 T 13-10-2018 SJPD1_0147 309e0cae7b98a01b5f91cee7fc707eee 387 Pfam PF13458 Periplasmic binding protein 30 345 2.9E-54 T 13-10-2018 IPR028081 Leucine-binding protein domain SJPD1_0147 309e0cae7b98a01b5f91cee7fc707eee 387 SUPERFAMILY SSF53822 30 381 2.39E-61 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 SUPERFAMILY SSF117143 92 849 5.62E-56 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 809 887 2.3E-22 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 Pfam PF00460 Flagella basal body rod protein 5 35 2.0E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 Gene3D G3DSA:2.60.98.20 610 770 1.4E-9 T 13-10-2018 IPR037058 Flagellar hook protein FlgE superfamily SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 603 870 8.9E-45 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 350 8.4E-40 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 TIGRFAM TIGR02489 flgE_epsilon: flagellar hook protein FlgE 1 439 1.5E-134 T 13-10-2018 IPR012835 Flagellar hook FlgE GO:0009288|GO:0044781 SJPD1_2897 c1b5ffeb2760b0e9b5a7992afcdf339d 888 Pfam PF07559 Flagellar basal body protein FlaE 649 769 4.0E-15 T 13-10-2018 IPR011491 Flagellar hook protein FlgE SJPD1_2418 ba9e13e38a39468efcb44639f1d109bc 72 Gene3D G3DSA:2.40.50.140 1 72 4.0E-35 T 13-10-2018 SJPD1_2418 ba9e13e38a39468efcb44639f1d109bc 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 1.4E-26 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 SJPD1_2418 ba9e13e38a39468efcb44639f1d109bc 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 25.322 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 SJPD1_2418 ba9e13e38a39468efcb44639f1d109bc 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 5.2E-33 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 SJPD1_2418 ba9e13e38a39468efcb44639f1d109bc 72 SUPERFAMILY SSF50249 1 71 9.55E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0203 709ac3874378d3baf2b34607a2e168ba 108 Gene3D G3DSA:3.40.1350.10 8 107 2.4E-25 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 SJPD1_0203 709ac3874378d3baf2b34607a2e168ba 108 Pfam PF02021 Uncharacterised protein family UPF0102 9 95 1.1E-20 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 SJPD1_0203 709ac3874378d3baf2b34607a2e168ba 108 SUPERFAMILY SSF52980 9 103 2.23E-24 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 SJPD1_0203 709ac3874378d3baf2b34607a2e168ba 108 Hamap MF_00048 UPF0102 protein YraN [yraN]. 2 108 18.068 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Pfam PF02574 Homocysteine S-methyltransferase 13 303 1.0E-57 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 SUPERFAMILY SSF82282 3 377 5.76E-99 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 SUPERFAMILY SSF51717 335 598 3.92E-72 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Pfam PF00809 Pterin binding enzyme 338 571 1.0E-36 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Pfam PF02310 B12 binding domain 716 807 8.9E-20 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 SUPERFAMILY SSF52242 711 837 5.23E-37 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 SMART SM01018 627 709 6.2E-33 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Pfam PF02607 B12 binding domain 631 701 6.0E-20 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Gene3D G3DSA:1.10.1240.10 620 706 7.0E-23 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 SUPERFAMILY SSF56507 873 1156 7.59E-72 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Gene3D G3DSA:3.40.50.280 711 858 9.5E-39 T 13-10-2018 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 TIGRFAM TIGR02082 metH: methionine synthase 9 1156 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Gene3D G3DSA:1.10.288.10 893 952 3.4E-47 T 13-10-2018 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Gene3D G3DSA:3.10.196.10 874 1156 3.4E-47 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 SUPERFAMILY SSF47644 626 707 3.4E-20 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 908 1156 1.2E-32 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Gene3D G3DSA:3.20.20.330 2 314 2.9E-88 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 Gene3D G3DSA:3.20.20.20 325 615 3.9E-91 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1865 c4c2e96a6590de399616d03f5b5722b9 1156 PIRSF PIRSF000381 1 1156 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1036 4150307c127049d2d02c12f1eb225e83 215 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 10 191 2.0E-52 T 13-10-2018 SJPD1_1036 4150307c127049d2d02c12f1eb225e83 215 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 127 210 9.7E-10 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like SJPD1_1834 f976d996e50f2d2a1c1d17df0e40f03c 93 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 30 91 1.1E-7 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_2823 0a791b5673765f9285235bbff86e507f 416 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 12 406 1.4E-100 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 SJPD1_2823 0a791b5673765f9285235bbff86e507f 416 Pfam PF00860 Permease family 14 385 5.9E-79 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 SJPD1_2823 0a791b5673765f9285235bbff86e507f 416 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 330 350 - T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 SJPD1_1776 b073d8afb19530df4f869679def29bb1 130 SMART SM00450 19 124 9.2E-8 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_1776 b073d8afb19530df4f869679def29bb1 130 Gene3D G3DSA:3.40.250.10 19 127 3.4E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1776 b073d8afb19530df4f869679def29bb1 130 Pfam PF00581 Rhodanese-like domain 30 118 8.3E-12 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_1776 b073d8afb19530df4f869679def29bb1 130 SUPERFAMILY SSF52821 26 123 5.11E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_0296 386d4ced068a218e74ade78b6cf22001 104 Pfam PF03745 Domain of unknown function (DUF309) 4 66 1.8E-14 T 13-10-2018 IPR005500 Protein of unknown function DUF309 SJPD1_0296 386d4ced068a218e74ade78b6cf22001 104 SUPERFAMILY SSF140663 5 70 1.2E-8 T 13-10-2018 IPR023203 TTHA0068-like superfamily SJPD1_0296 386d4ced068a218e74ade78b6cf22001 104 Gene3D G3DSA:1.20.58.500 3 97 5.8E-6 T 13-10-2018 SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 TIGRFAM TIGR00086 smpB: SsrA-binding protein 5 148 2.0E-55 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 Hamap MF_00023 SsrA-binding protein [smpB]. 1 153 62.553 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 Gene3D G3DSA:2.40.280.10 2 126 1.2E-45 T 13-10-2018 IPR023620 Small protein B SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 5 130 2.0E-44 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 Pfam PF01668 SmpB protein 5 149 9.7E-56 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 ProSitePatterns PS01317 SsrA-binding protein. 23 35 - T 13-10-2018 IPR020081 SsrA-binding protein, conserved site SJPD1_2016 d7b12c872e3957f0b2e0e735345ab815 154 SUPERFAMILY SSF74982 5 130 2.09E-43 T 13-10-2018 IPR023620 Small protein B SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 408 2.3E-59 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 SUPERFAMILY SSF50677 225 420 1.26E-44 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Gene3D G3DSA:1.10.730.10 604 748 1.3E-30 T 13-10-2018 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 51 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Gene3D G3DSA:3.10.20.590 755 815 1.9E-17 T 13-10-2018 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Gene3D G3DSA:3.40.50.620 32 580 9.5E-225 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Gene3D G3DSA:3.90.740.10 227 420 9.5E-225 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 SUPERFAMILY SSF52374 1 632 2.09E-140 T 13-10-2018 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 814 20.955 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 422 623 1.1E-22 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 11 170 8.9E-22 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 3 580 4.7E-252 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 Gene3D G3DSA:2.30.210.10 581 592 9.5E-225 T 13-10-2018 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 566 576 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 125 142 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 151 167 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 492 510 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 183 196 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 PRINTS PR00985 Leucyl-tRNA synthetase signature 533 555 1.9E-40 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 SJPD1_2005 c41867fc3a9f32f174249a32a0966f01 815 SUPERFAMILY SSF47323 628 815 2.18E-19 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2023 c8bdd0d639bf1630f925a0cc9ef63afa 573 TIGRFAM TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family 2 569 6.9E-171 T 13-10-2018 IPR011977 Peptidase M3B, oligoendopeptidase-related clade 3 SJPD1_2023 c8bdd0d639bf1630f925a0cc9ef63afa 573 Pfam PF08439 Oligopeptidase F 100 166 2.0E-11 T 13-10-2018 IPR013647 Oligopeptidase F, N-terminal domain SJPD1_2023 c8bdd0d639bf1630f925a0cc9ef63afa 573 Pfam PF01432 Peptidase family M3 183 554 6.6E-52 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 SJPD1_2023 c8bdd0d639bf1630f925a0cc9ef63afa 573 Gene3D G3DSA:1.10.1370.20 207 573 1.7E-108 T 13-10-2018 SJPD1_2023 c8bdd0d639bf1630f925a0cc9ef63afa 573 Gene3D G3DSA:1.20.140.70 12 158 3.4E-15 T 13-10-2018 SJPD1_2023 c8bdd0d639bf1630f925a0cc9ef63afa 573 SUPERFAMILY SSF55486 42 568 1.1E-102 T 13-10-2018 SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 Pfam PF08238 Sel1 repeat 37 70 0.003 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 Pfam PF08238 Sel1 repeat 74 102 2.9E-4 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 Pfam PF08238 Sel1 repeat 182 210 3.9E-5 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 Pfam PF08238 Sel1 repeat 107 141 1.0E-5 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SMART SM00671 143 174 2.6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SMART SM00671 175 210 2.1E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SMART SM00671 107 142 8.4E-8 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SMART SM00671 36 71 7.2E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SMART SM00671 72 106 1.6E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SUPERFAMILY SSF81901 29 86 1.7E-12 T 13-10-2018 SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 SUPERFAMILY SSF81901 89 218 8.63E-27 T 13-10-2018 SJPD1_2188 91ede5c4883be1a8d67abc49d5b074ce 229 Gene3D G3DSA:1.25.40.10 23 228 7.0E-49 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1524 835fa35022cfc02bf43f218e783aad03 343 SUPERFAMILY SSF52733 5 336 7.72E-97 T 13-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 SJPD1_1524 835fa35022cfc02bf43f218e783aad03 343 Gene3D G3DSA:1.10.1610.10 13 334 2.2E-114 T 13-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 SJPD1_1524 835fa35022cfc02bf43f218e783aad03 343 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 16 339 7.4E-108 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 SJPD1_1524 835fa35022cfc02bf43f218e783aad03 343 Pfam PF02277 Phosphoribosyltransferase 11 337 2.2E-110 T 13-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 SJPD1_1524 835fa35022cfc02bf43f218e783aad03 343 Gene3D G3DSA:3.40.50.10210 55 328 2.2E-114 T 13-10-2018 SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 SUPERFAMILY SSF55073 70 232 1.49E-44 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 Pfam PF13426 PAS domain 9 53 3.7E-6 T 13-10-2018 IPR000014 PAS domain SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 61 227 3.3E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 Pfam PF00990 Diguanylate cyclase, GGDEF domain 65 225 1.3E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 Gene3D G3DSA:3.30.450.20 1 63 2.1E-17 T 13-10-2018 SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 SMART SM00267 54 230 1.8E-57 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 Gene3D G3DSA:3.30.70.270 64 234 3.3E-54 T 13-10-2018 SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 8 60 2.8E-8 T 13-10-2018 IPR000014 PAS domain SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 SMART SM00086 12 54 6.2E-8 T 13-10-2018 IPR001610 PAC motif SJPD1_0470 95c0b2b25fafa47dd46914845b73971c 234 SUPERFAMILY SSF55785 1 62 2.09E-12 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 Gene3D G3DSA:3.90.550.10 1 198 3.0E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 SUPERFAMILY SSF109604 207 314 1.1E-11 T 13-10-2018 SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 Pfam PF01966 HD domain 222 313 9.6E-8 T 13-10-2018 IPR006674 HD domain SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 Pfam PF12804 MobA-like NTP transferase domain 8 166 3.4E-31 T 13-10-2018 IPR025877 MobA-like NTP transferase SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 SUPERFAMILY SSF53448 6 195 3.15E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 TIGRFAM TIGR00277 HDIG: HDIG domain 220 291 7.5E-8 T 13-10-2018 IPR006675 HDIG domain SJPD1_1847 ced476ac5931ec5331ebc0a2b70de1c9 368 Gene3D G3DSA:1.10.3210.10 202 334 3.3E-7 T 13-10-2018 SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 Pfam PF12857 TOBE-like domain 288 333 6.5E-7 T 13-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 Gene3D G3DSA:3.40.50.300 2 278 2.4E-82 T 13-10-2018 SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 241 2.5E-122 T 13-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 Pfam PF00005 ABC transporter 18 164 4.9E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 SUPERFAMILY SSF50331 239 321 1.19E-6 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 SMART SM00382 27 214 2.4E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2576 783e6e07e47bf3735bcd1f42bc58ab4c 359 SUPERFAMILY SSF52540 3 246 6.02E-89 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0802 f192fc2a938e73045412cbf95f7030ed 244 Gene3D G3DSA:3.40.980.10 5 165 9.5E-28 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_0802 f192fc2a938e73045412cbf95f7030ed 244 SMART SM00852 5 168 2.9E-16 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_0802 f192fc2a938e73045412cbf95f7030ed 244 SUPERFAMILY SSF53218 7 165 6.28E-21 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_0802 f192fc2a938e73045412cbf95f7030ed 244 Pfam PF00994 Probable molybdopterin binding domain 7 161 9.7E-18 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_0936 1bb9d2ff600a200f7fe3d7eb10eebc95 179 Gene3D G3DSA:1.10.10.1190 119 178 7.2E-10 T 13-10-2018 SJPD1_0936 1bb9d2ff600a200f7fe3d7eb10eebc95 179 Pfam PF07275 Antirestriction protein (ArdA) 4 174 2.2E-24 T 13-10-2018 IPR009899 Antirestriction SJPD1_0936 1bb9d2ff600a200f7fe3d7eb10eebc95 179 Gene3D G3DSA:3.10.20.480 1 73 3.5E-12 T 13-10-2018 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 4 463 7.9E-230 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00145 Argininosuccinate lyase family signature 134 156 1.7E-6 T 13-10-2018 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 1.7E-6 T 13-10-2018 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 1.7E-6 T 13-10-2018 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 SUPERFAMILY SSF48557 3 460 6.33E-146 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 Gene3D G3DSA:1.10.40.30 408 456 1.2E-21 T 13-10-2018 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 Gene3D G3DSA:1.10.275.10 1 139 1.5E-55 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 Pfam PF10415 Fumarase C C-terminus 408 460 9.4E-22 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 Gene3D G3DSA:1.20.200.10 140 407 1.0E-113 T 13-10-2018 SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 Pfam PF00206 Lyase 14 342 1.1E-99 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00149 Fumarate lyase superfamily signature 135 153 3.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 3.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 3.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 3.5E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2498 4fc94c30ada4d1ab5a77d8065d659d20 476 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 SJPD1_2357 b2b0f58859707c11a7e37b77bdcffafb 607 Pfam PF02690 Na+/Pi-cotransporter 32 171 1.3E-35 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 SJPD1_2357 b2b0f58859707c11a7e37b77bdcffafb 607 Pfam PF02690 Na+/Pi-cotransporter 198 266 2.4E-9 T 13-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 296 355 4.5E-7 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SUPERFAMILY SSF55874 357 547 2.23E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SUPERFAMILY SSF47384 297 358 1.37E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SMART SM00260 536 676 7.6E-30 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Gene3D G3DSA:1.20.120.160 3 137 2.6E-29 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SMART SM01231 295 357 3.3E-7 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Gene3D G3DSA:2.30.30.40 544 672 2.0E-35 T 13-10-2018 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Gene3D G3DSA:1.10.287.560 296 357 2.8E-11 T 13-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SUPERFAMILY SSF47226 5 123 2.09E-25 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Pfam PF01627 Hpt domain 6 96 1.2E-13 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Gene3D G3DSA:3.30.565.10 358 543 5.1E-55 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 404 543 9.3E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Pfam PF01584 CheW-like domain 549 675 8.9E-20 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SMART SM00073 2 100 5.8E-21 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SMART SM00387 402 544 4.7E-25 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 Gene3D G3DSA:2.40.50.180 567 631 2.0E-35 T 13-10-2018 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 522 4.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 448 462 4.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 541 4.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2460 b7ae154c6d89af5324ad54d93d8031e0 676 SUPERFAMILY SSF50341 543 675 1.96E-26 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 SJPD1_0617 0df75dc40d07d3d84d18d675706bc638 211 SUPERFAMILY SSF55681 2 160 6.96E-31 T 13-10-2018 SJPD1_0617 0df75dc40d07d3d84d18d675706bc638 211 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 3 204 1.7E-30 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 SJPD1_0617 0df75dc40d07d3d84d18d675706bc638 211 Gene3D G3DSA:3.30.930.10 1 177 1.4E-28 T 13-10-2018 SJPD1_0617 0df75dc40d07d3d84d18d675706bc638 211 Pfam PF03099 Biotin/lipoate A/B protein ligase family 7 124 1.3E-13 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 SMART SM00448 1 112 7.3E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 Gene3D G3DSA:3.40.50.2300 1 130 3.4E-33 T 13-10-2018 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 217 1.5E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 SUPERFAMILY SSF52172 1 166 7.97E-36 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 SUPERFAMILY SSF46894 146 217 1.87E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 SMART SM00862 147 217 2.9E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 Pfam PF00072 Response regulator receiver domain 3 112 4.9E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0300 7ad74cb7e8845d5a883cb710a562c5dc 219 Gene3D G3DSA:1.10.10.10 131 219 7.1E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0629 34773ba4d1a88194c58bcf1057f35dc2 258 Pfam PF13103 TonB C terminal 170 253 1.0E-14 T 13-10-2018 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Gene3D G3DSA:3.40.228.10 187 379 8.6E-114 T 13-10-2018 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Pfam PF00384 Molybdopterin oxidoreductase 102 519 4.6E-62 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Gene3D G3DSA:2.40.40.20 641 779 3.9E-39 T 13-10-2018 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Gene3D G3DSA:3.40.50.740 104 522 8.6E-114 T 13-10-2018 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 SUPERFAMILY SSF50692 618 779 5.65E-29 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 SUPERFAMILY SSF53706 46 659 1.31E-135 T 13-10-2018 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Gene3D G3DSA:2.20.25.90 39 103 3.0E-20 T 13-10-2018 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 SMART SM00926 45 99 1.6E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 46 98 4.5E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2871 7b5a997c79597f23c887174a458d11f0 779 Pfam PF01568 Molydopterin dinucleotide binding domain 657 772 2.4E-19 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 Gene3D G3DSA:3.40.50.300 1 212 3.2E-73 T 13-10-2018 SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 SUPERFAMILY SSF52540 77 360 4.79E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 SMART SM00490 259 340 7.9E-31 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 Gene3D G3DSA:3.40.50.300 215 432 5.3E-50 T 13-10-2018 SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 SMART SM00487 20 223 2.0E-47 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 Pfam PF00270 DEAD/DEAH box helicase 25 196 1.3E-47 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_1919 f99e3d9753f7e33ff03d4e1ad65e3e72 436 Pfam PF00271 Helicase conserved C-terminal domain 240 340 8.5E-27 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_2075 5dcd929feb72cfb505e7c9af8a2e6201 296 SUPERFAMILY SSF103481 63 146 1.96E-9 T 13-10-2018 SJPD1_2075 5dcd929feb72cfb505e7c9af8a2e6201 296 SUPERFAMILY SSF103481 191 290 3.01E-5 T 13-10-2018 SJPD1_2075 5dcd929feb72cfb505e7c9af8a2e6201 296 Pfam PF00892 EamA-like transporter family 7 144 2.1E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2075 5dcd929feb72cfb505e7c9af8a2e6201 296 Pfam PF00892 EamA-like transporter family 157 287 4.7E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 PRINTS PR00419 Adrenodoxin reductase family signature 178 191 9.0E-29 T 13-10-2018 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 PRINTS PR00419 Adrenodoxin reductase family signature 220 230 9.0E-29 T 13-10-2018 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 PRINTS PR00419 Adrenodoxin reductase family signature 155 177 9.0E-29 T 13-10-2018 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 PRINTS PR00419 Adrenodoxin reductase family signature 293 307 9.0E-29 T 13-10-2018 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 PRINTS PR00419 Adrenodoxin reductase family signature 327 340 9.0E-29 T 13-10-2018 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 SUPERFAMILY SSF46548 11 164 1.31E-26 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 Gene3D G3DSA:3.50.50.60 288 473 1.6E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 Gene3D G3DSA:3.50.50.60 152 281 3.3E-34 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 Gene3D G3DSA:1.10.1060.10 3 150 6.4E-26 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 154 451 7.1E-30 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 SUPERFAMILY SSF51971 153 399 4.94E-63 T 13-10-2018 SJPD1_1298 751379d29e04058b2657b93f388a2ed1 474 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 22 141 1.9E-26 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 118 132 4.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 220 230 4.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 282 293 4.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 45 59 4.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00102 Ornithine carbamoyltransferase signature 78 91 4.1E-29 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 Gene3D G3DSA:3.40.50.1370 2 131 2.7E-116 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 1 304 78.559 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 142 2.4E-50 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 2 302 5.2E-118 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 Gene3D G3DSA:3.40.50.1370 132 299 2.7E-116 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 47 54 - T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 151 301 5.8E-54 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 SUPERFAMILY SSF53671 1 303 1.7E-99 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 291 7.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 256 265 7.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 47 66 7.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_0494 360b0a7fe12ab614cf411b842d729980 308 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 129 140 7.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 Hamap MF_01201 Alanine racemase. 1 342 20.401 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 SMART SM01005 230 342 3.2E-16 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 SUPERFAMILY SSF50621 225 341 2.06E-23 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 13-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 SUPERFAMILY SSF51419 6 231 1.64E-41 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 Pfam PF00842 Alanine racemase, C-terminal domain 230 340 8.4E-14 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 TIGRFAM TIGR00492 alr: alanine racemase 2 341 9.0E-52 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 PRINTS PR00992 Alanine racemase signature 143 154 1.9E-27 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 PRINTS PR00992 Alanine racemase signature 190 217 1.9E-27 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 PRINTS PR00992 Alanine racemase signature 263 278 1.9E-27 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 PRINTS PR00992 Alanine racemase signature 25 41 1.9E-27 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 PRINTS PR00992 Alanine racemase signature 110 122 1.9E-27 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 PRINTS PR00992 Alanine racemase signature 246 261 1.9E-27 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 Pfam PF01168 Alanine racemase, N-terminal domain 6 216 5.5E-41 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 Gene3D G3DSA:3.20.20.10 10 218 5.5E-40 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_0481 8c7b6218a797650abc09d1babf35721e 342 Gene3D G3DSA:2.40.37.10 219 342 6.1E-16 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 3 330 43.969 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 PIRSF PIRSF000116 203 335 6.0E-13 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 PIRSF PIRSF000116 4 208 1.6E-41 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 SUPERFAMILY SSF51735 4 184 2.77E-71 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 Gene3D G3DSA:3.40.50.720 1 183 3.1E-76 T 13-10-2018 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 SUPERFAMILY SSF48179 185 334 1.17E-68 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 179 4.3E-74 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 185 328 7.0E-64 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 Gene3D G3DSA:1.10.3730.40 184 340 7.6E-70 T 13-10-2018 SJPD1_1158 831d713fec1f42e35afa35f6165e8a07 340 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 17 328 1.0E-132 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 SJPD1_1900 4c5db70a43097b95af8965bc3599f778 133 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 3 126 5.8E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_1900 4c5db70a43097b95af8965bc3599f778 133 Pfam PF08447 PAS fold 26 115 6.0E-23 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_1900 4c5db70a43097b95af8965bc3599f778 133 SMART SM00091 3 71 0.0012 T 13-10-2018 IPR000014 PAS domain SJPD1_1900 4c5db70a43097b95af8965bc3599f778 133 Gene3D G3DSA:3.30.450.20 2 117 7.6E-28 T 13-10-2018 SJPD1_1900 4c5db70a43097b95af8965bc3599f778 133 SUPERFAMILY SSF55785 8 122 8.38E-22 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1900 4c5db70a43097b95af8965bc3599f778 133 SMART SM00086 78 121 9.0E-6 T 13-10-2018 IPR001610 PAC motif SJPD1_2213 0c920ed9333d507d536942b990866253 414 PRINTS PR00981 Seryl-tRNA synthetase signature 275 288 6.4E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 PRINTS PR00981 Seryl-tRNA synthetase signature 315 328 6.4E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 PRINTS PR00981 Seryl-tRNA synthetase signature 350 366 6.4E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 PRINTS PR00981 Seryl-tRNA synthetase signature 263 275 6.4E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 PRINTS PR00981 Seryl-tRNA synthetase signature 332 348 6.4E-29 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 397 8.8E-37 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2213 0c920ed9333d507d536942b990866253 414 Gene3D G3DSA:1.10.287.40 1 105 1.0E-12 T 13-10-2018 SJPD1_2213 0c920ed9333d507d536942b990866253 414 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 414 38.264 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 PIRSF PIRSF001529 1 414 1.8E-165 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_2213 0c920ed9333d507d536942b990866253 414 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 3.5E-21 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 SJPD1_2213 0c920ed9333d507d536942b990866253 414 SUPERFAMILY SSF46589 1 113 1.15E-19 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 SJPD1_2213 0c920ed9333d507d536942b990866253 414 Gene3D G3DSA:3.30.930.10 106 414 3.1E-119 T 13-10-2018 SJPD1_2213 0c920ed9333d507d536942b990866253 414 SUPERFAMILY SSF55681 117 414 3.73E-94 T 13-10-2018 SJPD1_2213 0c920ed9333d507d536942b990866253 414 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 414 1.6E-167 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 SJPD1_0368 00bd8b037259af3c7ef5350541273f79 171 Pfam PF03350 Uncharacterized protein family, UPF0114 10 134 2.8E-32 T 13-10-2018 IPR005134 Uncharacterised protein family UPF0114 SJPD1_0368 00bd8b037259af3c7ef5350541273f79 171 PIRSF PIRSF026509 1 171 6.3E-42 T 13-10-2018 IPR005134 Uncharacterised protein family UPF0114 SJPD1_0406 a6dcbb4dd3eb2addeaf6f76947ca212e 246 Pfam PF01738 Dienelactone hydrolase family 34 243 8.8E-34 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 SJPD1_0406 a6dcbb4dd3eb2addeaf6f76947ca212e 246 SUPERFAMILY SSF53474 24 244 4.83E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0406 a6dcbb4dd3eb2addeaf6f76947ca212e 246 Gene3D G3DSA:3.40.50.1820 17 245 3.0E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0293 f1798e4514a7ef3855020f19071a6c6f 142 Gene3D G3DSA:3.30.300.70 3 75 2.2E-16 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily SJPD1_0293 f1798e4514a7ef3855020f19071a6c6f 142 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 5 142 19.141 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 SJPD1_0293 f1798e4514a7ef3855020f19071a6c6f 142 SUPERFAMILY SSF75420 9 78 1.7E-17 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily SJPD1_0293 f1798e4514a7ef3855020f19071a6c6f 142 SUPERFAMILY SSF74942 79 142 2.35E-8 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily SJPD1_0293 f1798e4514a7ef3855020f19071a6c6f 142 Pfam PF02576 RimP N-terminal domain 9 78 1.3E-19 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal SJPD1_0293 f1798e4514a7ef3855020f19071a6c6f 142 Pfam PF17384 RimP C-terminal SH3 domain 81 142 3.7E-7 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 Gene3D G3DSA:3.40.50.2300 1 121 1.7E-34 T 13-10-2018 SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 SMART SM00862 142 217 1.9E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 Gene3D G3DSA:1.10.10.10 122 223 9.3E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 Pfam PF00072 Response regulator receiver domain 3 113 1.9E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 142 217 2.3E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 SMART SM00448 1 112 1.6E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0278 7d8a60e4e09056531a08e14d286500ca 223 SUPERFAMILY SSF52172 1 172 3.95E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 115 7.7E-33 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 114 1.9E-23 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 Gene3D G3DSA:3.90.470.20 1 115 3.2E-25 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 1 110 4.8E-15 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 1 115 18.474 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 SUPERFAMILY SSF56214 2 114 1.57E-23 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 SJPD1_1172 5215bb58fb69ebdc2b8a75c26b445ee4 124 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 5 114 2.0E-28 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 166 2.4E-58 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 SUPERFAMILY SSF52467 185 356 4.0E-60 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 388 536 3.6E-53 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 Gene3D G3DSA:3.40.50.970 357 563 1.2E-70 T 13-10-2018 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 SUPERFAMILY SSF52518 362 562 3.04E-71 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 3 559 9.8E-247 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 327 3.3E-45 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 Gene3D G3DSA:3.40.50.1220 187 353 2.2E-56 T 13-10-2018 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 Gene3D G3DSA:3.40.50.970 1 184 4.0E-71 T 13-10-2018 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 425 444 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 SJPD1_1612 2d021e5b6e0c614f57c528670acc4103 563 SUPERFAMILY SSF52518 1 179 1.43E-64 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 Pfam PF07690 Major Facilitator Superfamily 15 406 1.3E-48 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 Gene3D G3DSA:1.20.1250.20 263 501 2.5E-15 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 Gene3D G3DSA:1.20.1720.10 12 245 5.4E-50 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 13 491 1.6E-71 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 3.4E-11 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 3.4E-11 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 161 185 3.4E-11 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 74 96 3.4E-11 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 PRINTS PR01036 Tetracycline resistance protein TetB signature 398 417 3.4E-11 T 13-10-2018 SJPD1_2351 f31032f84d6cc603bc65eadb57b139e0 502 SUPERFAMILY SSF103473 7 498 1.06E-64 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2551 f34ca87808197f34e30ab527c9157824 345 Gene3D G3DSA:3.40.50.300 4 238 7.5E-52 T 13-10-2018 SJPD1_2551 f34ca87808197f34e30ab527c9157824 345 Pfam PF00005 ABC transporter 25 165 2.2E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2551 f34ca87808197f34e30ab527c9157824 345 SUPERFAMILY SSF52540 7 224 3.79E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2551 f34ca87808197f34e30ab527c9157824 345 SUPERFAMILY SSF50331 221 338 1.45E-6 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2551 f34ca87808197f34e30ab527c9157824 345 SMART SM00382 30 214 4.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0962 6942143ea6146dff8b187bc1d521bc5f 87 Gene3D G3DSA:1.10.260.40 1 83 1.8E-23 T 13-10-2018 SJPD1_0962 6942143ea6146dff8b187bc1d521bc5f 87 SUPERFAMILY SSF47413 10 85 8.73E-19 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0962 6942143ea6146dff8b187bc1d521bc5f 87 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 81 1.2E-21 T 13-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 SJPD1_1343 7206cd33102d04e0f9ef975dc6e6c69f 151 Gene3D G3DSA:1.10.10.10 1 151 2.7E-43 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1343 7206cd33102d04e0f9ef975dc6e6c69f 151 Pfam PF01638 HxlR-like helix-turn-helix 19 105 3.3E-20 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type SJPD1_1343 7206cd33102d04e0f9ef975dc6e6c69f 151 SUPERFAMILY SSF46785 5 142 6.71E-33 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 PIRSF PIRSF017245 1 786 0.0 T 13-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 SUPERFAMILY SSF52518 3 366 2.27E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 ProSitePatterns PS60002 Phosphoketolase signature 1. 142 148 - T 13-10-2018 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site GO:0005975|GO:0016832 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Gene3D G3DSA:3.40.50.920 603 788 5.1E-75 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Pfam PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 397 572 9.1E-90 T 13-10-2018 IPR005593 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase GO:0005975|GO:0016832 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Hamap MF_01403 Probable phosphoketolase. 3 786 40.867 T 13-10-2018 IPR023962 Probable phosphoketolase SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Gene3D G3DSA:3.40.50.970 384 602 2.7E-108 T 13-10-2018 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Pfam PF09364 XFP N-terminal domain 6 383 6.4E-195 T 13-10-2018 IPR018970 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 SUPERFAMILY SSF52518 374 585 2.41E-24 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Pfam PF09363 XFP C-terminal domain 583 784 4.2E-91 T 13-10-2018 IPR018969 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal GO:0005975|GO:0016832 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 ProSitePatterns PS60003 Phosphoketolase signature 2. 155 173 - T 13-10-2018 IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site GO:0005975|GO:0016832 SJPD1_0397 55f20b06b7e2677fc32c75a6c0b29dd8 788 Gene3D G3DSA:3.40.50.970 1 383 4.6E-178 T 13-10-2018 SJPD1_0287 80100d98f0a461ac09100dcebc403517 198 Gene3D G3DSA:2.160.20.70 79 198 2.9E-9 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 SJPD1_0287 80100d98f0a461ac09100dcebc403517 198 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 103 148 2.1E-8 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 SJPD1_0287 80100d98f0a461ac09100dcebc403517 198 SUPERFAMILY SSF63848 100 196 3.53E-11 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 SJPD1_2799 b8d5f2f242ef04b4150fdaf6011504a2 378 TIGRFAM TIGR03573 WbuX: N-acetyl sugar amidotransferase 1 344 4.8E-119 T 13-10-2018 IPR020022 N-acetyl sugar amidotransferase SJPD1_2799 b8d5f2f242ef04b4150fdaf6011504a2 378 SUPERFAMILY SSF52402 15 165 6.05E-13 T 13-10-2018 SJPD1_2799 b8d5f2f242ef04b4150fdaf6011504a2 378 Gene3D G3DSA:3.40.50.620 3 172 1.9E-7 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0577 7c4867fe6feada0a89409eb2bc336aae 294 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 277 9.9E-39 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 SJPD1_2002 c19445d3d47e6a79005bb83c60fe97d8 384 SUPERFAMILY SSF53623 10 261 2.93E-56 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_2002 c19445d3d47e6a79005bb83c60fe97d8 384 Gene3D G3DSA:3.40.1190.10 2 263 6.2E-58 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_2002 c19445d3d47e6a79005bb83c60fe97d8 384 SUPERFAMILY SSF53244 268 381 2.59E-17 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_2002 c19445d3d47e6a79005bb83c60fe97d8 384 Pfam PF08245 Mur ligase middle domain 42 178 5.3E-5 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 SJPD1_2002 c19445d3d47e6a79005bb83c60fe97d8 384 Gene3D G3DSA:3.90.190.20 268 384 1.1E-15 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_2002 c19445d3d47e6a79005bb83c60fe97d8 384 TIGRFAM TIGR01499 folC: bifunctional protein FolC 21 379 1.3E-79 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 SJPD1_1265 ec0cf823c65e1b4434ae07f73f508d2f 268 Gene3D G3DSA:3.10.310.10 9 258 1.6E-80 T 13-10-2018 SJPD1_1265 ec0cf823c65e1b4434ae07f73f508d2f 268 PIRSF PIRSF016184 3 266 8.5E-48 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 SJPD1_1265 ec0cf823c65e1b4434ae07f73f508d2f 268 Gene3D G3DSA:3.10.310.10 122 254 1.6E-80 T 13-10-2018 SJPD1_1265 ec0cf823c65e1b4434ae07f73f508d2f 268 SUPERFAMILY SSF54506 6 265 8.03E-69 T 13-10-2018 SJPD1_1265 ec0cf823c65e1b4434ae07f73f508d2f 268 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 7 225 3.4E-34 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 SJPD1_1265 ec0cf823c65e1b4434ae07f73f508d2f 268 Pfam PF02567 Phenazine biosynthesis-like protein 11 256 6.5E-52 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 SJPD1_0315 79b93e20f6cef1a53c53bfc696fac491 421 SMART SM00729 42 257 7.9E-25 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0315 79b93e20f6cef1a53c53bfc696fac491 421 Pfam PF13394 4Fe-4S single cluster domain 46 129 7.6E-6 T 13-10-2018 SJPD1_0315 79b93e20f6cef1a53c53bfc696fac491 421 Gene3D G3DSA:3.80.30.20 3 331 1.9E-51 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_0315 79b93e20f6cef1a53c53bfc696fac491 421 SUPERFAMILY SSF102114 20 405 5.1E-56 T 13-10-2018 SJPD1_0315 79b93e20f6cef1a53c53bfc696fac491 421 Pfam PF04055 Radical SAM superfamily 47 206 4.9E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 Pfam PF01235 Sodium:alanine symporter family 51 442 1.3E-143 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 PRINTS PR00175 Sodium/alanine symporter signature 209 228 2.1E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 PRINTS PR00175 Sodium/alanine symporter signature 304 322 2.1E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 PRINTS PR00175 Sodium/alanine symporter signature 348 370 2.1E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 PRINTS PR00175 Sodium/alanine symporter signature 90 112 2.1E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 PRINTS PR00175 Sodium/alanine symporter signature 181 199 2.1E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 PRINTS PR00175 Sodium/alanine symporter signature 407 427 2.1E-56 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_2822 3252b2fee6a514bceadc0f5fd4a25598 443 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 438 5.5E-162 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 51 1.8E-8 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 Gene3D G3DSA:3.40.1030.10 60 326 3.0E-99 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 1 323 32.301 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 1 322 1.2E-108 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 SUPERFAMILY SSF52418 64 324 6.15E-88 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 Pfam PF00591 Glycosyl transferase family, a/b domain 63 313 1.9E-83 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 SUPERFAMILY SSF47648 1 55 1.83E-9 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 SJPD1_1480 69a55b80b8cec1e2fa2fedf10d574be5 327 Gene3D G3DSA:1.20.970.10 1 54 5.5E-12 T 13-10-2018 SJPD1_1085 d20116df9c1c27f6e028c3bd856a9321 1122 Gene3D G3DSA:3.10.620.30 92 277 5.1E-26 T 13-10-2018 SJPD1_1085 d20116df9c1c27f6e028c3bd856a9321 1122 SMART SM00460 172 248 9.6E-24 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1085 d20116df9c1c27f6e028c3bd856a9321 1122 Pfam PF09899 Putative amidoligase enzyme (DUF2126) 276 1116 0.0 T 13-10-2018 IPR018667 Domain of unknown function DUF2126 SJPD1_1085 d20116df9c1c27f6e028c3bd856a9321 1122 Pfam PF01841 Transglutaminase-like superfamily 137 245 9.0E-19 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1085 d20116df9c1c27f6e028c3bd856a9321 1122 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 7 82 4.5E-27 T 13-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal SJPD1_1085 d20116df9c1c27f6e028c3bd856a9321 1122 SUPERFAMILY SSF54001 9 337 2.8E-71 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 381 527 3.8E-38 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 Gene3D G3DSA:3.40.50.970 350 574 9.3E-64 T 13-10-2018 SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 8.5E-39 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 SUPERFAMILY SSF52518 359 556 5.68E-55 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 SUPERFAMILY SSF52518 5 179 1.03E-38 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 319 8.4E-30 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 418 437 - T 13-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 Gene3D G3DSA:3.40.50.1220 180 333 4.8E-47 T 13-10-2018 SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 SUPERFAMILY SSF52467 182 350 1.87E-40 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily SJPD1_1666 67d0f4f8acec6e7dca092c353d197cd3 574 Gene3D G3DSA:3.40.50.970 1 177 1.4E-53 T 13-10-2018 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 Gene3D G3DSA:2.40.30.10 213 305 5.3E-19 T 13-10-2018 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 SUPERFAMILY SSF52540 3 228 7.14E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 Pfam PF00009 Elongation factor Tu GTP binding domain 3 185 5.1E-40 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 SUPERFAMILY SSF50447 214 304 4.16E-13 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 Gene3D G3DSA:2.40.30.10 308 410 1.1E-22 T 13-10-2018 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 SUPERFAMILY SSF50465 309 410 1.03E-19 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 Gene3D G3DSA:3.40.50.300 1 211 4.9E-63 T 13-10-2018 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 4 401 4.4E-104 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 1 185 1.0E-11 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 PRINTS PR00315 GTP-binding elongation factor signature 136 145 3.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 PRINTS PR00315 GTP-binding elongation factor signature 63 71 3.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 PRINTS PR00315 GTP-binding elongation factor signature 83 93 3.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 PRINTS PR00315 GTP-binding elongation factor signature 99 110 3.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2759 02f8a6dec5b37525517fbc422a63fd70 462 PRINTS PR00315 GTP-binding elongation factor signature 5 18 3.7E-16 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2266 84efe25411142a44e65395422e3eee58 202 Gene3D G3DSA:2.40.30.20 1 78 1.2E-11 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_2266 84efe25411142a44e65395422e3eee58 202 PIRSF PIRSF000498 1 197 3.1E-61 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2266 84efe25411142a44e65395422e3eee58 202 Gene3D G3DSA:2.40.30.20 92 193 1.8E-31 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_2266 84efe25411142a44e65395422e3eee58 202 SUPERFAMILY SSF63380 83 186 1.36E-31 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel SJPD1_2266 84efe25411142a44e65395422e3eee58 202 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 188 1.6E-57 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2266 84efe25411142a44e65395422e3eee58 202 SUPERFAMILY SSF63380 1 81 2.64E-12 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel SJPD1_2266 84efe25411142a44e65395422e3eee58 202 Pfam PF00677 Lumazine binding domain 90 174 3.7E-24 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2266 84efe25411142a44e65395422e3eee58 202 Pfam PF00677 Lumazine binding domain 3 69 1.0E-9 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2222 2f4b8a2b1faa0ec8c7aca8c0a6bebfe8 203 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 202 3.6E-73 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 SJPD1_2222 2f4b8a2b1faa0ec8c7aca8c0a6bebfe8 203 SUPERFAMILY SSF52317 2 202 6.12E-60 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2222 2f4b8a2b1faa0ec8c7aca8c0a6bebfe8 203 Gene3D G3DSA:3.40.50.880 1 203 1.0E-82 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2222 2f4b8a2b1faa0ec8c7aca8c0a6bebfe8 203 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 203 36.633 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 SJPD1_2222 2f4b8a2b1faa0ec8c7aca8c0a6bebfe8 203 Pfam PF00117 Glutamine amidotransferase class-I 4 201 1.4E-22 T 13-10-2018 IPR017926 Glutamine amidotransferase SJPD1_2222 2f4b8a2b1faa0ec8c7aca8c0a6bebfe8 203 PIRSF PIRSF000495 1 203 8.4E-76 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 SMART SM00790 1 208 4.6E-84 T 13-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 Gene3D G3DSA:3.60.9.10 1 210 2.3E-53 T 13-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 5 205 1.4E-53 T 13-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 Gene3D G3DSA:1.10.569.10 245 422 1.8E-63 T 13-10-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 SUPERFAMILY SSF48310 214 577 9.16E-97 T 13-10-2018 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 SUPERFAMILY SSF56228 2 208 3.66E-55 T 13-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 225 558 2.7E-68 T 13-10-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 SJPD1_2154 8e1890a0214b6e689d45da9fe2b65060 578 Gene3D G3DSA:1.10.599.10 244 556 1.8E-63 T 13-10-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 SJPD1_2247 41bd406a5996c850ae6d8a21dfa76289 247 SUPERFAMILY SSF53448 1 143 1.77E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2247 41bd406a5996c850ae6d8a21dfa76289 247 Pfam PF00535 Glycosyl transferase family 2 5 94 1.4E-17 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2247 41bd406a5996c850ae6d8a21dfa76289 247 Gene3D G3DSA:3.90.550.10 1 235 1.8E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2448 da7d7c4bf07c019978ce4c4e1d7e3416 348 Pfam PF13432 Tetratricopeptide repeat 114 169 7.0E-5 T 13-10-2018 SJPD1_2448 da7d7c4bf07c019978ce4c4e1d7e3416 348 Gene3D G3DSA:1.25.40.10 33 236 9.2E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2448 da7d7c4bf07c019978ce4c4e1d7e3416 348 Pfam PF13176 Tetratricopeptide repeat 73 95 7.4E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2448 da7d7c4bf07c019978ce4c4e1d7e3416 348 SUPERFAMILY SSF48452 59 171 1.14E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0156 a135c46ad13eaa429b1b42a484817cab 282 SUPERFAMILY SSF47384 60 132 2.35E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0156 a135c46ad13eaa429b1b42a484817cab 282 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 176 274 2.4E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0156 a135c46ad13eaa429b1b42a484817cab 282 SUPERFAMILY SSF55874 136 275 9.95E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0156 a135c46ad13eaa429b1b42a484817cab 282 Gene3D G3DSA:3.30.565.10 133 273 1.8E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0156 a135c46ad13eaa429b1b42a484817cab 282 Gene3D G3DSA:1.10.287.130 76 132 1.8E-29 T 13-10-2018 SJPD1_0156 a135c46ad13eaa429b1b42a484817cab 282 SMART SM00387 175 279 3.3E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1846 12a9610433059659df59f32990346595 197 PIRSF PIRSF000709 2 196 1.4E-21 T 13-10-2018 SJPD1_1846 12a9610433059659df59f32990346595 197 SUPERFAMILY SSF53254 4 194 9.62E-49 T 13-10-2018 IPR029033 Histidine phosphatase superfamily SJPD1_1846 12a9610433059659df59f32990346595 197 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 191 4.5E-49 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 SJPD1_1846 12a9610433059659df59f32990346595 197 Gene3D G3DSA:3.40.50.1240 2 197 1.9E-51 T 13-10-2018 IPR029033 Histidine phosphatase superfamily SJPD1_1846 12a9610433059659df59f32990346595 197 SMART SM00855 4 157 7.6E-17 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 SJPD1_0220 f384ab8baf3e2d4e221fbb2661b2e654 362 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 1 178 31.597 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 SJPD1_0220 f384ab8baf3e2d4e221fbb2661b2e654 362 Pfam PF02677 Uncharacterized BCR, COG1636 1 174 5.8E-55 T 13-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 SJPD1_2340 9d0ca7edc782f261372d7ff3cfaee719 192 SUPERFAMILY SSF102114 23 104 3.92E-13 T 13-10-2018 SJPD1_2340 9d0ca7edc782f261372d7ff3cfaee719 192 Pfam PF04055 Radical SAM superfamily 27 129 2.7E-9 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2340 9d0ca7edc782f261372d7ff3cfaee719 192 Pfam PF13353 4Fe-4S single cluster domain 12 107 5.2E-8 T 13-10-2018 SJPD1_2340 9d0ca7edc782f261372d7ff3cfaee719 192 Gene3D G3DSA:3.20.20.70 1 192 8.7E-48 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2340 9d0ca7edc782f261372d7ff3cfaee719 192 PIRSF PIRSF000370 1 192 5.6E-40 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 SJPD1_2340 9d0ca7edc782f261372d7ff3cfaee719 192 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 2 192 35.77 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 SUPERFAMILY SSF74863 23 139 1.7E-18 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 Gene3D G3DSA:3.40.30.10 467 585 1.3E-32 T 13-10-2018 SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 SUPERFAMILY SSF52833 472 584 1.83E-25 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 Pfam PF00085 Thioredoxin 478 583 3.1E-13 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 Pfam PF11412 Disulphide bond corrector protein DsbC 24 138 7.8E-15 T 13-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 Gene3D G3DSA:2.60.40.1250 17 154 7.9E-17 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily SJPD1_1716 85bc39890af7278748dc44503a6d1faa 587 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 177 381 5.4E-18 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 SUPERFAMILY SSF53150 27 207 3.92E-9 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 SUPERFAMILY SSF48334 199 511 7.72E-35 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 PIRSF PIRSF037677 2 814 8.3E-71 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 Gene3D G3DSA:3.40.50.300 513 843 1.8E-61 T 13-10-2018 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 Pfam PF05192 MutS domain III 198 504 2.4E-28 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 SMART SM00534 575 765 3.5E-50 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 Gene3D G3DSA:1.10.1420.10 198 504 2.6E-31 T 13-10-2018 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 SMART SM00533 210 540 2.4E-33 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 Gene3D G3DSA:1.10.1420.10 308 447 2.6E-31 T 13-10-2018 SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 SUPERFAMILY SSF52540 518 766 1.25E-28 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0743 2be4a7b909c23bd972809f8bdfb4b8a0 865 Pfam PF00488 MutS domain V 579 767 1.3E-40 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 SJPD1_2776 257f84788b78a4973ff056d20132474f 223 Pfam PF02621 Menaquinone biosynthesis 109 216 1.7E-9 T 13-10-2018 IPR003773 Menaquinone biosynthesis enzyme SJPD1_2776 257f84788b78a4973ff056d20132474f 223 Pfam PF02621 Menaquinone biosynthesis 3 104 1.2E-7 T 13-10-2018 IPR003773 Menaquinone biosynthesis enzyme SJPD1_2776 257f84788b78a4973ff056d20132474f 223 Gene3D G3DSA:3.40.190.10 1 105 1.2E-15 T 13-10-2018 SJPD1_2776 257f84788b78a4973ff056d20132474f 223 Gene3D G3DSA:3.40.190.10 117 223 8.0E-11 T 13-10-2018 SJPD1_2776 257f84788b78a4973ff056d20132474f 223 SUPERFAMILY SSF53850 1 219 5.97E-47 T 13-10-2018 SJPD1_2776 257f84788b78a4973ff056d20132474f 223 Hamap MF_00995 Chorismate dehydratase [mqnA]. 2 221 21.761 T 13-10-2018 IPR030868 Chorismate dehydratase GO:0009234|GO:0016829 KEGG: 00130+4.2.1.151|MetaCyc: PWY-7371|MetaCyc: PWY-7374 SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Gene3D G3DSA:3.20.20.450 684 923 2.4E-66 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SMART SM00267 515 672 3.0E-7 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Gene3D G3DSA:3.30.70.270 527 683 5.6E-19 T 13-10-2018 SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 413 521 3.4E-13 T 13-10-2018 IPR000014 PAS domain SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Pfam PF13426 PAS domain 412 514 2.6E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SMART SM00052 682 921 4.9E-56 T 13-10-2018 IPR001633 EAL domain SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Pfam PF00990 Diguanylate cyclase, GGDEF domain 527 664 1.3E-12 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SMART SM01204 216 340 1.7E-15 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Pfam PF10442 FIST C domain 218 338 7.0E-13 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Pfam PF08495 FIST N domain 31 213 1.7E-26 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Pfam PF00563 EAL domain 690 916 1.6E-54 T 13-10-2018 IPR001633 EAL domain SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SUPERFAMILY SSF55073 530 668 4.87E-17 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SUPERFAMILY SSF141868 689 922 1.7E-62 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SUPERFAMILY SSF55785 410 511 8.38E-27 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 SMART SM00897 27 215 9.5E-29 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_2184 604b2c326cce04a3c79e4ca29ab5b1cd 923 Gene3D G3DSA:3.30.450.20 384 526 2.0E-27 T 13-10-2018 SJPD1_0063 098151c479db7e518d7e8cc2d7bb3834 259 Gene3D G3DSA:3.40.50.300 1 204 6.8E-14 T 13-10-2018 SJPD1_0063 098151c479db7e518d7e8cc2d7bb3834 259 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 119 1.8E-7 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain SJPD1_0063 098151c479db7e518d7e8cc2d7bb3834 259 SUPERFAMILY SSF52540 1 163 3.55E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1714 a36595c258a4e596c6b405f3152c308d 234 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 234 33.086 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 SJPD1_1714 a36595c258a4e596c6b405f3152c308d 234 Gene3D G3DSA:3.90.550.10 1 233 3.0E-75 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1714 a36595c258a4e596c6b405f3152c308d 234 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 227 1.2E-75 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 SJPD1_1714 a36595c258a4e596c6b405f3152c308d 234 Pfam PF02348 Cytidylyltransferase 1 206 2.5E-48 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 SJPD1_1714 a36595c258a4e596c6b405f3152c308d 234 SUPERFAMILY SSF53448 2 233 2.48E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Pfam PF00384 Molybdopterin oxidoreductase 115 544 3.5E-63 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 58 112 5.4E-8 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Gene3D G3DSA:3.40.228.10 193 617 2.8E-121 T 13-10-2018 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 SMART SM00926 57 112 2.2E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Gene3D G3DSA:2.20.25.90 52 117 2.8E-9 T 13-10-2018 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Gene3D G3DSA:3.40.50.740 126 550 2.8E-121 T 13-10-2018 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Pfam PF01568 Molydopterin dinucleotide binding domain 639 735 9.1E-24 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 SUPERFAMILY SSF50692 635 758 3.39E-30 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 SUPERFAMILY SSF53706 59 639 1.15E-141 T 13-10-2018 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Gene3D G3DSA:3.30.2070.10 504 591 2.8E-121 T 13-10-2018 SJPD1_0895 c1551f239bf068e0e6345f705228313b 758 Gene3D G3DSA:2.40.40.20 618 758 6.3E-29 T 13-10-2018 SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 SUPERFAMILY SSF47384 296 371 2.94E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 SMART SM00387 412 534 5.1E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 SUPERFAMILY SSF55874 370 507 3.8E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 Gene3D G3DSA:3.30.565.10 372 532 1.2E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 Pfam PF12729 Four helix bundle sensory module for signal transduction 16 70 9.0E-7 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 Gene3D G3DSA:1.10.287.130 287 371 2.2E-10 T 13-10-2018 SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 414 506 5.5E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 502 9.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 481 9.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0148 d5638e551d1065c7680ab1a8f8c69618 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 467 9.5E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 PRINTS PR00625 DnaJ domain signature 188 206 3.9E-9 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 PRINTS PR00625 DnaJ domain signature 230 250 3.9E-9 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 PRINTS PR00625 DnaJ domain signature 206 221 3.9E-9 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 SUPERFAMILY SSF46565 126 249 2.51E-17 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 SMART SM00271 185 250 1.1E-11 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 Gene3D G3DSA:1.10.287.110 178 250 1.2E-13 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 Gene3D G3DSA:1.10.3680.10 22 177 2.8E-13 T 13-10-2018 IPR029024 TerB-like SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 Pfam PF05099 Tellurite resistance protein TerB 47 165 4.0E-12 T 13-10-2018 IPR007791 Co-chaperone DjlA, N-terminal SJPD1_1813 7932d81b538eac0c54b0ea38784daac5 250 Pfam PF00226 DnaJ domain 187 249 1.7E-11 T 13-10-2018 IPR001623 DnaJ domain SJPD1_2152 507d0e57f6aa62e410008288fad730a4 148 SUPERFAMILY SSF53163 3 142 1.73E-20 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily SJPD1_2152 507d0e57f6aa62e410008288fad730a4 148 Gene3D G3DSA:3.40.50.1450 1 148 1.2E-48 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily SJPD1_2152 507d0e57f6aa62e410008288fad730a4 148 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 141 1.5E-20 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 SUPERFAMILY SSF54768 110 222 2.83E-23 T 13-10-2018 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 Pfam PF14622 Ribonuclease-III-like 18 136 3.9E-31 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 SUPERFAMILY SSF69065 2 153 1.01E-46 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 Gene3D G3DSA:1.10.1520.10 4 147 6.1E-45 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 Gene3D G3DSA:3.30.160.20 155 221 1.5E-20 T 13-10-2018 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 Pfam PF00035 Double-stranded RNA binding motif 157 222 1.5E-15 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 29.111 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 SMART SM00535 20 149 2.6E-47 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 220 3.2E-70 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 SJPD1_2446 f512c5e535b9872440b1ddc725825873 227 SMART SM00358 156 223 1.2E-17 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 SMART SM00271 3 61 1.2E-32 T 13-10-2018 IPR001623 DnaJ domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 SUPERFAMILY SSF57938 140 214 3.01E-18 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Gene3D G3DSA:2.10.230.10 153 212 2.8E-33 T 13-10-2018 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 PRINTS PR00625 DnaJ domain signature 6 24 5.9E-29 T 13-10-2018 IPR001623 DnaJ domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 PRINTS PR00625 DnaJ domain signature 61 80 5.9E-29 T 13-10-2018 IPR001623 DnaJ domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 PRINTS PR00625 DnaJ domain signature 24 39 5.9E-29 T 13-10-2018 IPR001623 DnaJ domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 PRINTS PR00625 DnaJ domain signature 41 61 5.9E-29 T 13-10-2018 IPR001623 DnaJ domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Gene3D G3DSA:2.60.260.20 125 253 2.8E-33 T 13-10-2018 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 SUPERFAMILY SSF46565 4 114 1.44E-33 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 13-10-2018 IPR018253 DnaJ domain, conserved site SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 354 1.9E-123 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Pfam PF00684 DnaJ central domain 153 212 1.2E-12 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 SUPERFAMILY SSF49493 263 348 1.96E-15 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Pfam PF00226 DnaJ domain 4 66 8.3E-29 T 13-10-2018 IPR001623 DnaJ domain SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 SUPERFAMILY SSF49493 125 258 2.49E-14 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Pfam PF01556 DnaJ C terminal domain 126 337 3.3E-32 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Gene3D G3DSA:1.10.287.110 2 117 2.7E-35 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 376 35.167 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 SJPD1_0679 2e227c925a2221b9dc38916815b7a0c4 378 Gene3D G3DSA:2.60.260.20 259 369 3.0E-18 T 13-10-2018 SJPD1_1822 6475d36732013c42b91d55c55e631efe 364 Pfam PF12698 ABC-2 family transporter protein 20 356 2.6E-38 T 13-10-2018 SJPD1_2841 f21752a13f320fd4f080b0cf4a1d7995 92 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 2.2E-24 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 SJPD1_2841 f21752a13f320fd4f080b0cf4a1d7995 92 SUPERFAMILY SSF54928 2 89 8.19E-32 T 13-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 SJPD1_2841 f21752a13f320fd4f080b0cf4a1d7995 92 Gene3D G3DSA:3.30.70.330 1 90 3.2E-31 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily SJPD1_2841 f21752a13f320fd4f080b0cf4a1d7995 92 SMART SM00360 2 75 2.5E-28 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 SJPD1_2250 177ab3ba666c3d441365b1a0342e6e89 314 Gene3D G3DSA:3.40.50.2000 2 136 7.8E-17 T 13-10-2018 SJPD1_2250 177ab3ba666c3d441365b1a0342e6e89 314 SUPERFAMILY SSF53756 1 310 1.46E-79 T 13-10-2018 SJPD1_2250 177ab3ba666c3d441365b1a0342e6e89 314 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 127 308 1.8E-41 T 13-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 SJPD1_2250 177ab3ba666c3d441365b1a0342e6e89 314 Gene3D G3DSA:3.40.50.2000 137 311 7.0E-55 T 13-10-2018 SJPD1_2250 177ab3ba666c3d441365b1a0342e6e89 314 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 107 289 6.4E-38 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 4 141 3.9E-49 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 SUPERFAMILY SSF52096 30 200 1.67E-52 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 Gene3D G3DSA:3.90.226.10 1 202 5.0E-62 T 13-10-2018 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 146 159 1.5E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 162 175 1.5E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 190 199 1.5E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 81 92 1.5E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 106 124 1.5E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_2277 d8dbedf7c8e94bfa1ec41cce45ec18e1 202 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 127 143 1.5E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_1396 761cad87dedb8360f8ed8af9ff672ad8 415 Pfam PF02308 MgtC family 9 131 8.3E-20 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 SJPD1_1396 761cad87dedb8360f8ed8af9ff672ad8 415 Pfam PF13194 Domain of unknown function (DUF4010) 180 388 4.9E-58 T 13-10-2018 IPR025105 Domain of unknown function DUF4010 SJPD1_0289 dfdcf9ab2f95aed1f3c742cea5c1a70a 120 SUPERFAMILY SSF53067 4 62 1.49E-8 T 13-10-2018 SJPD1_0289 dfdcf9ab2f95aed1f3c742cea5c1a70a 120 Gene3D G3DSA:3.30.420.40 1 95 4.4E-5 T 13-10-2018 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 PRINTS PR00126 ATP synthase gamma subunit signature 79 98 5.3E-30 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 PRINTS PR00126 ATP synthase gamma subunit signature 271 292 5.3E-30 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 PRINTS PR00126 ATP synthase gamma subunit signature 240 259 5.3E-30 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 PRINTS PR00126 ATP synthase gamma subunit signature 172 189 5.3E-30 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 SUPERFAMILY SSF52943 2 292 1.02E-76 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 Gene3D G3DSA:3.40.1380.10 61 210 6.5E-86 T 13-10-2018 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 Gene3D G3DSA:1.10.287.80 6 289 6.5E-86 T 13-10-2018 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 292 2.1E-91 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 293 31.587 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0624 52834cd0e1b23defc77aa817c2d126aa 294 Pfam PF00231 ATP synthase 3 292 1.4E-84 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Gene3D G3DSA:1.10.287.130 438 520 1.7E-8 T 13-10-2018 SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Gene3D G3DSA:3.30.565.10 523 677 5.4E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 SMART SM00387 565 678 3.1E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Gene3D G3DSA:3.30.450.20 55 279 3.8E-55 T 13-10-2018 SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 SUPERFAMILY SSF47384 448 520 3.34E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 SUPERFAMILY SSF55874 522 673 5.63E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Pfam PF02743 Cache domain 40 267 4.0E-30 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 569 672 3.7E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Gene3D G3DSA:3.30.450.20 68 181 3.8E-55 T 13-10-2018 SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 SUPERFAMILY SSF103190 60 189 6.04E-7 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_0901 98fe08e78deaa7611ae7233c95444ca8 680 Gene3D G3DSA:3.30.450.20 307 429 3.2E-6 T 13-10-2018 SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 145 1.1E-39 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 65 145 1.9E-23 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 Gene3D G3DSA:3.40.5.10 1 53 1.2E-20 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 23.227 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 SUPERFAMILY SSF55653 57 147 1.2E-22 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 1.7E-19 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 Gene3D G3DSA:3.10.430.100 60 147 5.6E-24 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 SUPERFAMILY SSF55658 1 55 1.17E-16 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal SJPD1_1476 2168da94debc39e84ef3547ac45a6771 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2567 072cdf22111d04f864bd5bc4ce1d9eb6 231 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 155 230 1.8E-16 T 13-10-2018 IPR006260 TonB/TolA, C-terminal SJPD1_2567 072cdf22111d04f864bd5bc4ce1d9eb6 231 Gene3D G3DSA:3.30.1150.10 108 230 5.4E-25 T 13-10-2018 SJPD1_2567 072cdf22111d04f864bd5bc4ce1d9eb6 231 SUPERFAMILY SSF74653 117 230 4.19E-19 T 13-10-2018 SJPD1_2567 072cdf22111d04f864bd5bc4ce1d9eb6 231 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 154 229 2.9E-15 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 SMART SM00862 157 227 3.9E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 226 6.7E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 Gene3D G3DSA:1.10.10.10 135 229 6.3E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 SUPERFAMILY SSF52172 12 183 2.99E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 SMART SM00448 12 123 2.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 Pfam PF00072 Response regulator receiver domain 15 122 1.6E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1002 c50d0455335ec2bfb81ae3e7f9195ed5 229 Gene3D G3DSA:3.40.50.2300 9 134 4.9E-31 T 13-10-2018 SJPD1_2518 7714648a32a991dc692924457c149271 206 SUPERFAMILY SSF53955 25 192 2.09E-20 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily SJPD1_2518 7714648a32a991dc692924457c149271 206 Pfam PF01464 Transglycosylase SLT domain 27 171 5.9E-15 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 SJPD1_2632 2049cb67ed4630117bebb3adeae0f554 442 Gene3D G3DSA:3.90.1300.10 35 434 2.9E-147 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_2632 2049cb67ed4630117bebb3adeae0f554 442 SUPERFAMILY SSF75304 3 437 7.46E-106 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_2632 2049cb67ed4630117bebb3adeae0f554 442 Pfam PF01425 Amidase 19 431 2.3E-81 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_2632 2049cb67ed4630117bebb3adeae0f554 442 Gene3D G3DSA:1.20.58.1700 287 360 2.9E-147 T 13-10-2018 SJPD1_2632 2049cb67ed4630117bebb3adeae0f554 442 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 35 440 8.5E-173 T 13-10-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 4 282 9.2E-145 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 2 283 57.505 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 108 132 9.4E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 56 71 9.4E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 157 172 9.4E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 246 262 9.4E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 134 154 9.4E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 77 97 9.4E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 Gene3D G3DSA:1.20.58.180 210 284 8.2E-34 T 13-10-2018 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 SUPERFAMILY SSF55681 3 282 2.34E-127 T 13-10-2018 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 3 282 2.1E-155 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 SJPD1_2043 72d7e4e857e796cd29ede1c8b4688feb 285 Gene3D G3DSA:3.30.930.10 1 209 2.4E-108 T 13-10-2018 SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 SUPERFAMILY SSF159127 1 78 9.94E-26 T 13-10-2018 IPR037254 HupF/HypC superfamily SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 Gene3D G3DSA:2.40.50.970 1 80 7.0E-30 T 13-10-2018 IPR037254 HupF/HypC superfamily SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 Pfam PF01455 HupF/HypC family 1 66 2.3E-25 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 78 1.3E-26 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 18 34 1.1E-13 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 40 56 1.1E-13 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 58 70 1.1E-13 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC SJPD1_1412 8143fc17be6af0c358383b018d3cdf58 89 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 1.1E-13 T 13-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC SJPD1_1845 f0740ff3873edd629c578093a40c6278 358 SUPERFAMILY SSF54631 184 317 2.48E-22 T 13-10-2018 SJPD1_1845 f0740ff3873edd629c578093a40c6278 358 Gene3D G3DSA:3.10.580.10 179 325 6.3E-37 T 13-10-2018 SJPD1_1845 f0740ff3873edd629c578093a40c6278 358 Pfam PF00571 CBS domain 266 316 4.8E-5 T 13-10-2018 IPR000644 CBS domain SJPD1_1845 f0740ff3873edd629c578093a40c6278 358 Pfam PF01595 Domain of unknown function DUF21 10 180 5.9E-26 T 13-10-2018 IPR002550 CNNM, transmembrane domain SJPD1_1361 30c33687f708a7a78ea6f100eac728b8 546 Gene3D G3DSA:1.20.1730.10 22 542 7.2E-73 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily SJPD1_1361 30c33687f708a7a78ea6f100eac728b8 546 Pfam PF00474 Sodium:solute symporter family 33 472 5.5E-54 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 SJPD1_0612 9b382126a496bfdffa7f08c4ad9178ef 102 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 102 24.166 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0612 9b382126a496bfdffa7f08c4ad9178ef 102 SUPERFAMILY SSF141091 1 100 1.14E-32 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0612 9b382126a496bfdffa7f08c4ad9178ef 102 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 13-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0612 9b382126a496bfdffa7f08c4ad9178ef 102 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 100 1.8E-36 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0612 9b382126a496bfdffa7f08c4ad9178ef 102 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 2.8E-34 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 Pfam PF09209 Domain of unknown function (DUF1956) 100 216 6.7E-16 T 13-10-2018 IPR015292 Transcription regulator YbiH, C-terminal SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 1.1E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 SUPERFAMILY SSF48498 101 213 3.26E-16 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 5.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 5.3E-5 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 Gene3D G3DSA:1.10.10.60 2 60 2.0E-17 T 13-10-2018 SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 SUPERFAMILY SSF46689 9 78 2.99E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1826 3359efec16daacaea07e5e9b7c81c5a2 227 Gene3D G3DSA:1.10.357.10 61 225 2.8E-29 T 13-10-2018 SJPD1_2483 ca302f5cb9f66c00b773661fe22f8e41 308 SUPERFAMILY SSF103481 58 153 5.23E-7 T 13-10-2018 SJPD1_2483 ca302f5cb9f66c00b773661fe22f8e41 308 Pfam PF00892 EamA-like transporter family 20 153 1.1E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2483 ca302f5cb9f66c00b773661fe22f8e41 308 TIGRFAM TIGR00688 rarD: protein RarD 19 272 1.0E-69 T 13-10-2018 IPR004626 RarD protein GO:0005887 SJPD1_2483 ca302f5cb9f66c00b773661fe22f8e41 308 SUPERFAMILY SSF103481 214 298 2.75E-6 T 13-10-2018 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 340 7.2E-113 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 13-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 SMART SM00865 209 328 4.2E-45 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 SUPERFAMILY SSF55307 208 323 4.58E-38 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 SUPERFAMILY SSF52490 15 206 2.75E-60 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 16 173 8.4E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 PRINTS PR00423 Cell division protein FtsZ signature 98 118 3.7E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 PRINTS PR00423 Cell division protein FtsZ signature 126 147 3.7E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 PRINTS PR00423 Cell division protein FtsZ signature 189 211 3.7E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 PRINTS PR00423 Cell division protein FtsZ signature 214 235 3.7E-38 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 Gene3D G3DSA:3.40.50.1440 8 222 2.4E-70 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 Pfam PF12327 FtsZ family, C-terminal domain 224 320 1.8E-23 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 SMART SM00864 16 205 1.0E-98 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 12 352 34.553 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 SJPD1_1797 1497f3f2334fa7770ece513da8299a12 372 Gene3D G3DSA:3.30.1330.20 223 336 1.0E-30 T 13-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 SJPD1_1795 ef88258c80b9e0aca10629b16356b4e0 487 Pfam PF13624 SurA N-terminal domain 1 164 7.0E-45 T 13-10-2018 SJPD1_1795 ef88258c80b9e0aca10629b16356b4e0 487 Pfam PF13145 PPIC-type PPIASE domain 241 356 1.4E-13 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 SJPD1_1795 ef88258c80b9e0aca10629b16356b4e0 487 SUPERFAMILY SSF109998 44 234 2.0E-21 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily SJPD1_1156 84620933601bc391b911bd58cff32433 648 ProSitePatterns PS01175 Ribonuclease II family signature. 504 528 - T 13-10-2018 IPR022966 Ribonuclease II/R, conserved site SJPD1_1156 84620933601bc391b911bd58cff32433 648 SUPERFAMILY SSF50249 179 580 1.66E-106 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1156 84620933601bc391b911bd58cff32433 648 SMART SM00955 216 537 1.4E-123 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 SJPD1_1156 84620933601bc391b911bd58cff32433 648 Pfam PF00773 RNB domain 216 536 4.9E-84 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 SJPD1_0515 333d580f8ab7bf9f36274f210849d918 246 Pfam PF00290 Tryptophan synthase alpha chain 2 236 4.1E-70 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_0515 333d580f8ab7bf9f36274f210849d918 246 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 33 46 - T 13-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_0515 333d580f8ab7bf9f36274f210849d918 246 SUPERFAMILY SSF51366 3 224 7.72E-68 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_0515 333d580f8ab7bf9f36274f210849d918 246 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 3 226 1.1E-62 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_0515 333d580f8ab7bf9f36274f210849d918 246 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 2 243 28.694 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_0515 333d580f8ab7bf9f36274f210849d918 246 Gene3D G3DSA:3.20.20.70 1 246 2.2E-76 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 2 204 5.8E-24 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 2 267 1.1E-73 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 1 225 31.34 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 85 96 - T 13-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 Gene3D G3DSA:3.40.1010.10 1 115 2.5E-33 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 SUPERFAMILY SSF53790 2 223 2.75E-62 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 Gene3D G3DSA:3.30.950.10 116 228 5.7E-30 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 SJPD1_0197 e03687a0e39eedc9711a9a229e6df10e 270 PIRSF PIRSF005917 1 270 5.5E-76 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 316 2.1E-32 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Gene3D G3DSA:3.30.1330.90 322 452 9.8E-31 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 5 526 2.4E-182 T 13-10-2018 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|Reactome: R-HSA-977347 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 SUPERFAMILY SSF143548 323 451 3.4E-31 T 13-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Gene3D G3DSA:3.40.50.720 96 286 4.0E-101 T 13-10-2018 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 SUPERFAMILY SSF55021 445 524 1.7E-14 T 13-10-2018 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Gene3D G3DSA:3.40.50.720 6 295 4.0E-101 T 13-10-2018 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Gene3D G3DSA:3.30.70.260 453 525 4.2E-13 T 13-10-2018 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 SUPERFAMILY SSF52283 24 123 1.0E-31 T 13-10-2018 SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 SUPERFAMILY SSF51735 103 285 4.06E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Pfam PF01842 ACT domain 457 515 1.5E-8 T 13-10-2018 IPR002912 ACT domain SJPD1_0732 8d65fb79ab0685c99728ad25c5f4dc03 528 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 284 1.7E-52 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 SJPD1_1028 db4996d5e1906891a6aa81ade5a3a66f 203 Pfam PF08241 Methyltransferase domain 37 134 1.3E-17 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 SJPD1_1028 db4996d5e1906891a6aa81ade5a3a66f 203 Gene3D G3DSA:3.40.50.150 2 203 1.5E-40 T 13-10-2018 SJPD1_1028 db4996d5e1906891a6aa81ade5a3a66f 203 SUPERFAMILY SSF53335 4 189 4.96E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1969 0dd0e62aecfdde171084faaf0be04508 350 SUPERFAMILY SSF81345 8 342 1.11E-70 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_1969 0dd0e62aecfdde171084faaf0be04508 350 Gene3D G3DSA:1.10.3470.10 9 349 1.2E-93 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_1969 0dd0e62aecfdde171084faaf0be04508 350 Pfam PF01032 FecCD transport family 24 342 8.3E-82 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 SJPD1_1209 edc1fdfac6e8698bb0ce18666fbf8428 294 SUPERFAMILY SSF53098 1 204 4.07E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_1209 edc1fdfac6e8698bb0ce18666fbf8428 294 Gene3D G3DSA:3.30.420.10 1 179 8.7E-32 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_1209 edc1fdfac6e8698bb0ce18666fbf8428 294 Pfam PF00929 Exonuclease 4 164 5.5E-16 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III SJPD1_1209 edc1fdfac6e8698bb0ce18666fbf8428 294 SMART SM00479 2 178 4.4E-15 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III SJPD1_1566 d292a65d5630c68caf94fe9765fc1fd3 407 SUPERFAMILY SSF56349 104 394 2.53E-51 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_1566 d292a65d5630c68caf94fe9765fc1fd3 407 Gene3D G3DSA:3.30.160.390 6 95 2.9E-25 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily SJPD1_1566 d292a65d5630c68caf94fe9765fc1fd3 407 Pfam PF00589 Phage integrase family 216 384 6.1E-21 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_1566 d292a65d5630c68caf94fe9765fc1fd3 407 Gene3D G3DSA:1.10.150.130 101 212 2.3E-22 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_1566 d292a65d5630c68caf94fe9765fc1fd3 407 Gene3D G3DSA:1.10.443.10 215 395 7.1E-15 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_1566 d292a65d5630c68caf94fe9765fc1fd3 407 Pfam PF13356 Arm DNA-binding domain 8 94 1.1E-13 T 13-10-2018 IPR025166 Integrase, DNA-binding domain SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 359 1.3E-56 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 Gene3D G3DSA:2.40.30.170 54 286 7.3E-57 T 13-10-2018 SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 Gene3D G3DSA:1.10.287.470 95 167 7.3E-57 T 13-10-2018 SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 Gene3D G3DSA:2.40.50.100 61 207 7.3E-57 T 13-10-2018 SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 SUPERFAMILY SSF111369 53 232 7.32E-19 T 13-10-2018 SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 229 7.2E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_1346 a79e2b326e9d80cb239223e279240e71 379 Gene3D G3DSA:2.40.420.20 287 357 7.3E-57 T 13-10-2018 SJPD1_1108 d0a124d86d49a98f7dde428710ee57b7 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 11 210 2.2E-63 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 SJPD1_1108 d0a124d86d49a98f7dde428710ee57b7 213 Pfam PF03006 Haemolysin-III related 8 204 8.5E-37 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 SJPD1_1979 a7e68beef1fa4dba65432922fb5f3cde 421 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 174 355 1.4E-10 T 13-10-2018 IPR004477 ComEC/Rec2-related protein SJPD1_1979 a7e68beef1fa4dba65432922fb5f3cde 421 Pfam PF03772 Competence protein 161 402 3.4E-23 T 13-10-2018 IPR004477 ComEC/Rec2-related protein SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Gene3D G3DSA:2.40.30.10 343 398 3.0E-28 T 13-10-2018 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 SUPERFAMILY SSF52540 6 224 2.92E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 399 7.9E-228 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Pfam PF03143 Elongation factor Tu C-terminal domain 303 397 3.2E-33 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Gene3D G3DSA:3.40.50.300 1 208 4.0E-69 T 13-10-2018 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 SUPERFAMILY SSF50447 210 306 1.49E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.3E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.3E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.3E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.3E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.3E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 399 59.574 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Gene3D G3DSA:2.40.30.10 211 339 2.4E-52 T 13-10-2018 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Pfam PF03144 Elongation factor Tu domain 2 230 299 2.8E-15 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 SUPERFAMILY SSF50465 307 399 9.21E-37 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 1.7E-58 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_0432 017bb273a4f2e4251cdaddd31790413d 399 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 4.8E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2816 f26e274296894bbefa569fd0af71064c 248 SUPERFAMILY SSF55166 137 246 7.3E-5 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_2816 f26e274296894bbefa569fd0af71064c 248 Gene3D G3DSA:3.30.1380.10 104 248 2.7E-8 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_2816 f26e274296894bbefa569fd0af71064c 248 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 136 246 1.6E-12 T 13-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 SJPD1_1812 41efa93864e4581503be7b15e31797fb 160 SUPERFAMILY SSF54637 6 150 2.7E-43 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_1812 41efa93864e4581503be7b15e31797fb 160 Pfam PF03061 Thioesterase superfamily 26 99 3.8E-13 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 SJPD1_1812 41efa93864e4581503be7b15e31797fb 160 Gene3D G3DSA:3.10.129.10 3 157 6.4E-56 T 13-10-2018 SJPD1_0322 5f8530fe8fd4f4cfb7eafb3de3f14874 305 SMART SM01131 179 305 7.7E-50 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 SJPD1_0322 5f8530fe8fd4f4cfb7eafb3de3f14874 305 Gene3D G3DSA:3.10.310.20 190 305 9.1E-34 T 13-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 SJPD1_0322 5f8530fe8fd4f4cfb7eafb3de3f14874 305 SUPERFAMILY SSF64182 3 303 8.37E-70 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily SJPD1_0322 5f8530fe8fd4f4cfb7eafb3de3f14874 305 Pfam PF01368 DHH family 4 143 6.3E-20 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 SJPD1_0322 5f8530fe8fd4f4cfb7eafb3de3f14874 305 Pfam PF02833 DHHA2 domain 180 302 1.8E-19 T 13-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 SJPD1_0322 5f8530fe8fd4f4cfb7eafb3de3f14874 305 Gene3D G3DSA:3.90.1640.10 1 187 5.1E-64 T 13-10-2018 SJPD1_1307 7def2781309d719c13b8b808a9474caa 407 Gene3D G3DSA:1.20.1250.20 6 395 1.6E-36 T 13-10-2018 SJPD1_1307 7def2781309d719c13b8b808a9474caa 407 Pfam PF05977 Transmembrane secretion effector 5 393 7.0E-63 T 13-10-2018 IPR010290 Transmembrane secretion effector SJPD1_1307 7def2781309d719c13b8b808a9474caa 407 SUPERFAMILY SSF103473 12 400 2.88E-48 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_0058 8a0073a47496bc0b69da601cc4e8d78e 86 Gene3D G3DSA:1.10.1660.10 27 85 3.9E-6 T 13-10-2018 SJPD1_0058 8a0073a47496bc0b69da601cc4e8d78e 86 SUPERFAMILY SSF46955 28 79 2.01E-8 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily SJPD1_0472 40738d07fc99b23e4d51058d490db584 114 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 2 77 8.0E-11 T 13-10-2018 SJPD1_0472 40738d07fc99b23e4d51058d490db584 114 Gene3D G3DSA:3.40.190.10 1 81 4.0E-9 T 13-10-2018 SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 295 7.0E-19 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 Gene3D G3DSA:1.10.287.470 92 197 2.5E-50 T 13-10-2018 SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 Gene3D G3DSA:2.40.420.20 43 366 2.5E-50 T 13-10-2018 SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 Gene3D G3DSA:2.40.30.170 47 308 2.5E-50 T 13-10-2018 SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 SUPERFAMILY SSF111369 51 305 2.09E-11 T 13-10-2018 SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 381 1.4E-34 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_2734 558dc1f3189f1f0448f7eb2e2c03dc18 382 Gene3D G3DSA:2.40.50.100 58 232 2.5E-50 T 13-10-2018 SJPD1_0337 f4fcea0e1dd79899561d63c84ccdb4d9 283 PIRSF PIRSF006483 1 283 2.1E-63 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT SJPD1_0337 f4fcea0e1dd79899561d63c84ccdb4d9 283 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 13 220 1.2E-54 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT SJPD1_0337 f4fcea0e1dd79899561d63c84ccdb4d9 283 Gene3D G3DSA:3.30.70.120 198 274 4.0E-11 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal SJPD1_0337 f4fcea0e1dd79899561d63c84ccdb4d9 283 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 229 281 5.6E-12 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 SJPD1_2471 4352e1c6ae01e1efffb8f4c1c8767a5d 477 Pfam PF06226 Protein of unknown function (DUF1007) 43 164 1.6E-4 T 13-10-2018 IPR010412 Protein of unknown function DUF1007 SJPD1_2471 4352e1c6ae01e1efffb8f4c1c8767a5d 477 Pfam PF03824 High-affinity nickel-transport protein 256 355 1.1E-10 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 SJPD1_2471 4352e1c6ae01e1efffb8f4c1c8767a5d 477 Pfam PF03824 High-affinity nickel-transport protein 386 475 6.9E-8 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 SJPD1_2471 4352e1c6ae01e1efffb8f4c1c8767a5d 477 ProSitePatterns PS00018 EF-hand calcium-binding domain. 66 78 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_1723 23a90ec458aaec9d3aa7b472f2a92125 82 Gene3D G3DSA:1.10.260.40 19 76 8.6E-8 T 13-10-2018 SJPD1_1723 23a90ec458aaec9d3aa7b472f2a92125 82 SUPERFAMILY SSF47413 21 53 2.82E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_2412 504aa47bbc9f34d80207093dd8e5e5fe 94 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 18 80 5.0E-14 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 SJPD1_2412 504aa47bbc9f34d80207093dd8e5e5fe 94 SUPERFAMILY SSF117916 3 86 7.85E-24 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_2412 504aa47bbc9f34d80207093dd8e5e5fe 94 Pfam PF01106 NifU-like domain 13 78 3.3E-22 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 SJPD1_2412 504aa47bbc9f34d80207093dd8e5e5fe 94 Gene3D G3DSA:3.30.300.130 1 86 2.2E-23 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_1627 1a663fc1b84397541afcf6b86ff97d88 194 SUPERFAMILY SSF52540 1 193 4.52E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1627 1a663fc1b84397541afcf6b86ff97d88 194 Pfam PF02223 Thymidylate kinase 5 188 2.5E-29 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 SJPD1_1627 1a663fc1b84397541afcf6b86ff97d88 194 Gene3D G3DSA:3.40.50.300 1 194 4.4E-35 T 13-10-2018 SJPD1_1627 1a663fc1b84397541afcf6b86ff97d88 194 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 188 3.3E-34 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 SJPD1_1627 1a663fc1b84397541afcf6b86ff97d88 194 Hamap MF_00165 Thymidylate kinase [tmk]. 1 192 17.657 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 SJPD1_2884 dae46e8a9f84d0fa3db579bd915f2444 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 3.3E-6 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SJPD1_2884 dae46e8a9f84d0fa3db579bd915f2444 111 PRINTS PR01651 Protein-export SecG membrane protein signature 52 74 3.3E-6 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SJPD1_2884 dae46e8a9f84d0fa3db579bd915f2444 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 71 6.0E-19 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SJPD1_2884 dae46e8a9f84d0fa3db579bd915f2444 111 Pfam PF03840 Preprotein translocase SecG subunit 4 71 6.7E-16 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 SJPD1_2511 0b39b9c170148eb78da26bce860357be 262 Pfam PF00005 ABC transporter 37 192 5.5E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2511 0b39b9c170148eb78da26bce860357be 262 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 21 262 6.5E-113 T 13-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD SJPD1_2511 0b39b9c170148eb78da26bce860357be 262 SUPERFAMILY SSF52540 21 260 2.92E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2511 0b39b9c170148eb78da26bce860357be 262 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 240 261 8.8E-6 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal SJPD1_2511 0b39b9c170148eb78da26bce860357be 262 Gene3D G3DSA:3.40.50.300 17 262 1.8E-51 T 13-10-2018 SJPD1_2367 1e15f6c0efa943db3b31119480e6940d 499 PIRSF PIRSF002741 17 499 7.1E-126 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 SJPD1_2367 1e15f6c0efa943db3b31119480e6940d 499 Gene3D G3DSA:3.90.76.10 49 163 2.1E-134 T 13-10-2018 SJPD1_2367 1e15f6c0efa943db3b31119480e6940d 499 SUPERFAMILY SSF53850 18 498 8.51E-123 T 13-10-2018 SJPD1_2367 1e15f6c0efa943db3b31119480e6940d 499 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 61 410 1.5E-75 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain SJPD1_2367 1e15f6c0efa943db3b31119480e6940d 499 Gene3D G3DSA:3.40.190.10 28 480 2.1E-134 T 13-10-2018 SJPD1_2367 1e15f6c0efa943db3b31119480e6940d 499 Gene3D G3DSA:3.10.105.10 258 468 2.1E-134 T 13-10-2018 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 397 404 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 8 48 1.1E-9 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 PIRSF PIRSF000774 1 419 2.5E-69 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 Pfam PF04963 Sigma-54 factor, core binding domain 79 255 3.1E-32 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 Pfam PF04552 Sigma-54, DNA binding domain 264 417 1.6E-45 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 Gene3D G3DSA:1.10.10.1330 85 206 1.1E-23 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 Gene3D G3DSA:1.10.10.60 357 416 2.0E-16 T 13-10-2018 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 PRINTS PR00045 Sigma-54 factor signature 392 410 1.4E-14 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 PRINTS PR00045 Sigma-54 factor signature 337 348 1.4E-14 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 PRINTS PR00045 Sigma-54 factor signature 321 333 1.4E-14 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 PRINTS PR00045 Sigma-54 factor signature 153 170 1.4E-14 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1483 f01cd3eb11803b1657ef47dc4e3a2ce6 423 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 416 5.0E-99 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_0105 d9fc0a3044725b5c1cdc4fe49d074f76 201 SUPERFAMILY SSF52540 7 191 2.47E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0105 d9fc0a3044725b5c1cdc4fe49d074f76 201 Gene3D G3DSA:3.40.50.300 3 198 3.3E-59 T 13-10-2018 SJPD1_0105 d9fc0a3044725b5c1cdc4fe49d074f76 201 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 7 186 1.3E-49 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 SJPD1_0105 d9fc0a3044725b5c1cdc4fe49d074f76 201 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 4 195 25.648 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 SJPD1_0105 d9fc0a3044725b5c1cdc4fe49d074f76 201 Pfam PF01121 Dephospho-CoA kinase 7 175 8.3E-48 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 Pfam PF02934 GatB/GatE catalytic domain 5 289 9.8E-115 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 142 156 - T 13-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 474 2.6E-185 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 SUPERFAMILY SSF55931 4 292 1.83E-121 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 Gene3D G3DSA:1.10.150.380 297 413 1.6E-27 T 13-10-2018 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 SUPERFAMILY SSF89095 297 399 5.36E-27 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 475 37.949 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 Pfam PF02637 GatB domain 328 474 2.1E-44 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 Gene3D G3DSA:1.10.10.410 414 476 3.6E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal SJPD1_1381 4903a533ced54f1372c881973bce0b16 476 SMART SM00845 328 474 5.0E-67 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 SJPD1_1011 3111e0833969ab8b4815e8babc816dab 200 SUPERFAMILY SSF140931 55 197 5.23E-31 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_1011 3111e0833969ab8b4815e8babc816dab 200 TIGRFAM TIGR02613 mob_myst_B: mobile mystery protein B 31 193 2.4E-48 T 13-10-2018 IPR013436 Mobile mystery protein B SJPD1_1011 3111e0833969ab8b4815e8babc816dab 200 Gene3D G3DSA:1.10.3290.10 20 200 2.4E-36 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_1011 3111e0833969ab8b4815e8babc816dab 200 Pfam PF02661 Fic/DOC family 59 152 1.7E-17 T 13-10-2018 IPR003812 Fido domain SJPD1_2737 22367b1291ad6e8098c8563670a5c47b 226 Pfam PF03942 DTW domain 8 203 1.3E-44 T 13-10-2018 IPR005636 DTW SJPD1_2737 22367b1291ad6e8098c8563670a5c47b 226 SMART SM01144 7 208 9.8E-35 T 13-10-2018 IPR005636 DTW SJPD1_2775 79aff60a3453f300f7bd4b1e668c0e66 247 Pfam PF03741 Integral membrane protein TerC family 15 205 5.7E-53 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 SJPD1_2630 7884d0fbb21836af0df464feb0bdfe6c 118 Gene3D G3DSA:3.40.50.12740 1 118 9.8E-38 T 13-10-2018 SJPD1_2630 7884d0fbb21836af0df464feb0bdfe6c 118 SMART SM00448 1 114 3.4E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2630 7884d0fbb21836af0df464feb0bdfe6c 118 SUPERFAMILY SSF52172 2 117 3.84E-36 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2630 7884d0fbb21836af0df464feb0bdfe6c 118 Pfam PF00072 Response regulator receiver domain 4 114 2.1E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 SUPERFAMILY SSF100879 281 381 1.86E-6 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Pfam PF11799 impB/mucB/samB family C-terminal domain 278 387 1.9E-4 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Gene3D G3DSA:3.30.1490.100 283 391 2.4E-5 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Pfam PF00817 impB/mucB/samB family 5 199 6.0E-41 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Gene3D G3DSA:2.30.40.20 10 50 3.5E-5 T 13-10-2018 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Gene3D G3DSA:1.10.150.20 220 270 5.0E-45 T 13-10-2018 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Gene3D G3DSA:3.30.70.270 120 277 5.0E-45 T 13-10-2018 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 SUPERFAMILY SSF56672 1 278 9.64E-53 T 13-10-2018 SJPD1_2534 034b6ba8c962816699bcf942a5d899e3 433 Gene3D G3DSA:2.30.40.20 83 119 5.0E-45 T 13-10-2018 SJPD1_2208 9afd1a9e5de601a3c8b4b92a6b8feb72 283 Pfam PF00892 EamA-like transporter family 1 126 7.9E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2208 9afd1a9e5de601a3c8b4b92a6b8feb72 283 SUPERFAMILY SSF103481 195 279 7.59E-7 T 13-10-2018 SJPD1_2208 9afd1a9e5de601a3c8b4b92a6b8feb72 283 SUPERFAMILY SSF103481 33 129 2.35E-14 T 13-10-2018 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 8 280 7.3E-112 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 Gene3D G3DSA:3.30.70.260 1 83 7.1E-14 T 13-10-2018 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 232 254 1.2E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 254 279 1.2E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 9 35 1.2E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 86 108 1.2E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 108 135 1.2E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 41 53 1.2E-51 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 Gene3D G3DSA:3.40.50.170 85 280 1.4E-65 T 13-10-2018 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 Pfam PF00551 Formyl transferase 87 261 2.7E-44 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 SUPERFAMILY SSF53328 87 280 1.57E-58 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 4 280 42.901 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 SUPERFAMILY SSF55021 6 70 1.54E-7 T 13-10-2018 SJPD1_1887 dc73b410f258850704907102f4c4c85f 280 PIRSF PIRSF036480 4 280 4.8E-108 T 13-10-2018 SJPD1_0301 e247b7a8443316cf9a3626853354bbc7 292 Pfam PF14827 Double sensory domain of two-component sensor kinase 15 178 2.1E-16 T 13-10-2018 IPR029150 Double Cache domain 3 SJPD1_0301 e247b7a8443316cf9a3626853354bbc7 292 SUPERFAMILY SSF103190 26 160 7.32E-6 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_1758 09c42043ec9f30e67f73fff444107297 44 Pfam PF00468 Ribosomal protein L34 1 44 3.3E-22 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1758 09c42043ec9f30e67f73fff444107297 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 13-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1758 09c42043ec9f30e67f73fff444107297 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 8.0E-24 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1758 09c42043ec9f30e67f73fff444107297 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.046 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1758 09c42043ec9f30e67f73fff444107297 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 42 3.0E-13 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1939 e93b1e0a44f97ca50c8523309e07cdba 267 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 188 249 3.4E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_1939 e93b1e0a44f97ca50c8523309e07cdba 267 Pfam PF00460 Flagella basal body rod protein 10 35 3.6E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 SJPD1_1939 e93b1e0a44f97ca50c8523309e07cdba 267 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site SJPD1_1939 e93b1e0a44f97ca50c8523309e07cdba 267 SUPERFAMILY SSF117143 96 222 2.88E-14 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like SJPD1_1939 e93b1e0a44f97ca50c8523309e07cdba 267 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 6 140 5.7E-29 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G SJPD1_2176 c4c76fe6d68fa9e66d487da8df9dc11e 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 110 127 2.0E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 SJPD1_2176 c4c76fe6d68fa9e66d487da8df9dc11e 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 138 151 2.0E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 SJPD1_2176 c4c76fe6d68fa9e66d487da8df9dc11e 307 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 62 73 2.0E-14 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 SJPD1_2176 c4c76fe6d68fa9e66d487da8df9dc11e 307 Gene3D G3DSA:3.40.710.10 13 305 4.6E-78 T 13-10-2018 SJPD1_2176 c4c76fe6d68fa9e66d487da8df9dc11e 307 SUPERFAMILY SSF56601 1 270 7.14E-59 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like SJPD1_2176 c4c76fe6d68fa9e66d487da8df9dc11e 307 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 32 258 2.0E-46 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 3 419 6.5E-157 T 13-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 Gene3D G3DSA:3.30.499.20 4 270 1.6E-93 T 13-10-2018 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 3 421 47.555 T 13-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 Pfam PF00330 Aconitase family (aconitate hydratase) 7 413 1.5E-93 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 SUPERFAMILY SSF53732 1 421 2.09E-141 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 419 8.1E-174 T 13-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 ProSitePatterns PS00450 Aconitase family signature 1. 294 310 - T 13-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 PRINTS PR00415 Aconitase family signature 189 202 1.1E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 PRINTS PR00415 Aconitase family signature 203 216 1.1E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 PRINTS PR00415 Aconitase family signature 298 309 1.1E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 PRINTS PR00415 Aconitase family signature 354 367 1.1E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 PRINTS PR00415 Aconitase family signature 113 126 1.1E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 PRINTS PR00415 Aconitase family signature 127 142 1.1E-22 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 Gene3D G3DSA:3.30.499.10 273 421 2.0E-54 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 SJPD1_2834 daf47694bd7cd0ba41a161f18f55b618 421 TIGRFAM TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit 4 420 1.7E-189 T 13-10-2018 IPR011823 3-isopropylmalate dehydratase, large subunit, bacteria GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 SUPERFAMILY SSF56519 49 242 8.11E-21 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 SUPERFAMILY SSF56601 245 580 7.3E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 Pfam PF00905 Penicillin binding protein transpeptidase domain 270 575 1.5E-59 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 Pfam PF03717 Penicillin-binding Protein dimerisation domain 49 209 3.7E-14 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 Gene3D G3DSA:3.40.710.10 304 496 1.2E-77 T 13-10-2018 SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 Gene3D G3DSA:3.90.1310.30 44 242 5.3E-18 T 13-10-2018 SJPD1_2065 302730ac02731c9cef9b00767e8dc96e 598 Gene3D G3DSA:3.30.450.330 247 578 1.2E-77 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:3.30.2090.10 180 272 1.8E-232 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:1.20.1640.10 499 1017 1.8E-232 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 SUPERFAMILY SSF82693 138 322 1.62E-11 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:1.20.1640.10 17 498 1.8E-232 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:3.30.70.1430 42 807 1.8E-232 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 SUPERFAMILY SSF82866 292 493 2.62E-42 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 SUPERFAMILY SSF82866 795 1022 1.01E-40 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 2.0E-25 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 2.0E-25 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 2.0E-25 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 2.0E-25 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 2.0E-25 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 SUPERFAMILY SSF82693 43 125 1.07E-13 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:3.30.70.1320 135 323 1.8E-232 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 SUPERFAMILY SSF82714 185 264 6.02E-12 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1021 6.5E-295 T 13-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:3.30.2090.10 712 799 1.8E-232 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:3.30.70.1440 661 860 1.8E-232 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Gene3D G3DSA:3.30.70.1430 558 660 1.8E-232 T 13-10-2018 SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 SUPERFAMILY SSF82714 711 794 1.57E-10 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2748 8965b7ef08f9e404e052d405d4581b31 1025 Pfam PF00873 AcrB/AcrD/AcrF family 9 1019 2.9E-206 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2185 573d79201b183ba6949abc2dacd511a8 133 Pfam PF07883 Cupin domain 54 121 3.5E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel SJPD1_2185 573d79201b183ba6949abc2dacd511a8 133 SUPERFAMILY SSF51182 27 123 8.0E-16 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_2185 573d79201b183ba6949abc2dacd511a8 133 Gene3D G3DSA:2.60.120.10 19 131 1.9E-13 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2546 c8d52e49fd5f5b5451094ac16b95c40f 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 49 267 5.7E-40 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_2546 c8d52e49fd5f5b5451094ac16b95c40f 277 Gene3D G3DSA:3.40.190.10 40 259 2.1E-51 T 13-10-2018 SJPD1_2546 c8d52e49fd5f5b5451094ac16b95c40f 277 SUPERFAMILY SSF53850 49 269 4.66E-47 T 13-10-2018 SJPD1_2546 c8d52e49fd5f5b5451094ac16b95c40f 277 SMART SM00062 48 272 1.1E-43 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_2546 c8d52e49fd5f5b5451094ac16b95c40f 277 Gene3D G3DSA:3.40.190.10 136 226 2.1E-51 T 13-10-2018 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 2.0E-13 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 2.0E-13 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 2.0E-13 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 SUPERFAMILY SSF143034 2 62 4.97E-17 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 13-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 16.306 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 2.3E-22 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 Gene3D G3DSA:2.40.50.530 4 62 6.3E-16 T 13-10-2018 SJPD1_0115 0e08d14832786b916c643c5707ff2e0c 64 Pfam PF01632 Ribosomal protein L35 2 61 1.9E-20 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 18 366 2.4E-130 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 12 367 37.937 T 13-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 18 366 1.1E-134 T 13-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 300 329 - T 13-10-2018 IPR030390 RNA methyltransferase TrmA, active site SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 SUPERFAMILY SSF53335 3 366 5.34E-60 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 Gene3D G3DSA:3.40.1350.30 53 191 2.6E-117 T 13-10-2018 SJPD1_1580 057f56f4101534af94bed5a9d7ea9017 367 Gene3D G3DSA:3.40.50.150 21 363 2.6E-117 T 13-10-2018 SJPD1_0456 de3430e7be26ade25801491786a0630c 531 SUPERFAMILY SSF53850 54 502 7.06E-41 T 13-10-2018 SJPD1_0456 de3430e7be26ade25801491786a0630c 531 Gene3D G3DSA:3.10.105.10 276 322 1.6E-37 T 13-10-2018 SJPD1_0456 de3430e7be26ade25801491786a0630c 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 88 320 1.1E-33 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain SJPD1_0456 de3430e7be26ade25801491786a0630c 531 Gene3D G3DSA:3.40.190.10 52 275 1.6E-37 T 13-10-2018 SJPD1_1092 6e818203fc7b80d288563f36d93390f9 457 PIRSF PIRSF005522 3 457 3.0E-160 T 13-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 SJPD1_1092 6e818203fc7b80d288563f36d93390f9 457 Gene3D G3DSA:3.30.1490.270 329 386 6.4E-17 T 13-10-2018 SJPD1_1092 6e818203fc7b80d288563f36d93390f9 457 Gene3D G3DSA:3.40.50.11290 195 290 3.1E-31 T 13-10-2018 SJPD1_1092 6e818203fc7b80d288563f36d93390f9 457 SUPERFAMILY SSF56059 11 446 9.98E-42 T 13-10-2018 SJPD1_1092 6e818203fc7b80d288563f36d93390f9 457 Pfam PF14403 Circularly permuted ATP-grasp type 2 57 431 1.4E-134 T 13-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 61 385 5.0E-44 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 Gene3D G3DSA:3.40.50.1100 62 391 1.4E-177 T 13-10-2018 SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 PIRSF PIRSF001413 5 401 1.2E-162 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 Gene3D G3DSA:3.40.50.1100 18 213 1.4E-177 T 13-10-2018 SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 395 4.2E-190 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 SUPERFAMILY SSF53686 11 394 5.11E-143 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme SJPD1_1129 c5631d0e3f9c72b84dedc0ba965941ca 401 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 398 51.55 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_1509 58cc96f9367c790b5e7a742405106492 493 SUPERFAMILY SSF54862 347 422 8.38E-11 T 13-10-2018 SJPD1_1509 58cc96f9367c790b5e7a742405106492 493 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 358 369 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1509 58cc96f9367c790b5e7a742405106492 493 TIGRFAM TIGR02486 RDH: reductive dehalogenase 168 456 3.7E-86 T 13-10-2018 IPR012832 Reductive dehalogenase SJPD1_1509 58cc96f9367c790b5e7a742405106492 493 Pfam PF13486 Reductive dehalogenase subunit 177 344 1.8E-31 T 13-10-2018 IPR028894 Reductive dehalogenase domain SJPD1_1509 58cc96f9367c790b5e7a742405106492 493 Pfam PF13484 4Fe-4S double cluster binding domain 357 421 1.9E-11 T 13-10-2018 SJPD1_1509 58cc96f9367c790b5e7a742405106492 493 Gene3D G3DSA:3.30.70.20 352 423 2.6E-8 T 13-10-2018 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 PRINTS PR00834 HtrA/DegQ protease family signature 109 121 2.9E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 PRINTS PR00834 HtrA/DegQ protease family signature 131 151 2.9E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 PRINTS PR00834 HtrA/DegQ protease family signature 228 245 2.9E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 PRINTS PR00834 HtrA/DegQ protease family signature 206 223 2.9E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 PRINTS PR00834 HtrA/DegQ protease family signature 312 324 2.9E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 PRINTS PR00834 HtrA/DegQ protease family signature 171 195 2.9E-52 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 Gene3D G3DSA:2.40.10.120 41 268 1.0E-79 T 13-10-2018 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 43 473 1.1E-141 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 Pfam PF13180 PDZ domain 274 363 1.3E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 Pfam PF13180 PDZ domain 409 457 8.3E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 Pfam PF13365 Trypsin-like peptidase domain 100 235 8.1E-34 T 13-10-2018 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 SMART SM00228 385 467 7.7E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 SMART SM00228 274 354 2.7E-10 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 SUPERFAMILY SSF50156 385 467 1.58E-12 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 Gene3D G3DSA:2.30.42.60 379 474 3.8E-15 T 13-10-2018 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 SUPERFAMILY SSF50494 40 270 2.79E-62 T 13-10-2018 IPR009003 Peptidase S1, PA clan SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 Gene3D G3DSA:2.30.42.10 269 374 8.9E-25 T 13-10-2018 SJPD1_1745 9602075cf637d0c46320a97f4583d36b 475 SUPERFAMILY SSF50156 232 355 1.45E-20 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 3.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 3.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00149 Fumarate lyase superfamily signature 135 153 3.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 3.3E-29 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2499 3180c02666c8832ec54a320222783c99 468 Pfam PF00206 Lyase 14 342 2.1E-96 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal SJPD1_2499 3180c02666c8832ec54a320222783c99 468 Gene3D G3DSA:1.10.275.10 1 139 1.1E-55 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 5.0E-6 T 13-10-2018 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00145 Argininosuccinate lyase family signature 134 156 5.0E-6 T 13-10-2018 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 5.0E-6 T 13-10-2018 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 Pfam PF10415 Fumarase C C-terminus 408 460 1.8E-20 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 Gene3D G3DSA:1.20.200.10 140 407 2.4E-110 T 13-10-2018 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 4 465 5.4E-226 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 Gene3D G3DSA:1.10.40.30 408 456 4.6E-21 T 13-10-2018 SJPD1_2499 3180c02666c8832ec54a320222783c99 468 SUPERFAMILY SSF48557 3 464 1.73E-144 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 PRINTS PR00154 AMP-binding signature 178 186 8.6E-5 T 13-10-2018 IPR020459 AMP-binding SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 PRINTS PR00154 AMP-binding signature 166 177 8.6E-5 T 13-10-2018 IPR020459 AMP-binding SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 Gene3D G3DSA:3.40.50.12780 3 411 6.1E-112 T 13-10-2018 SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 Gene3D G3DSA:3.30.300.310 414 516 1.3E-29 T 13-10-2018 SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 Pfam PF00501 AMP-binding enzyme 14 418 4.0E-103 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 SUPERFAMILY SSF56801 6 514 7.06E-143 T 13-10-2018 SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 Pfam PF13193 AMP-binding enzyme C-terminal domain 427 502 2.6E-17 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain SJPD1_0168 794e4b4dffca16e6d0564d89b671a075 521 ProSitePatterns PS00455 Putative AMP-binding domain signature. 171 182 - T 13-10-2018 IPR020845 AMP-binding, conserved site SJPD1_2706 69b3f9cd33b0c045de1b53004c8b0391 301 SUPERFAMILY SSF88713 3 291 2.67E-52 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 SJPD1_2706 69b3f9cd33b0c045de1b53004c8b0391 301 Pfam PF04794 YdjC-like protein 3 290 1.9E-51 T 13-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 SUPERFAMILY SSF52374 2 295 3.46E-69 T 13-10-2018 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 301 4.2E-65 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 SUPERFAMILY SSF48163 276 423 1.02E-16 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 1 423 5.6E-111 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 200 2.1E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 PRINTS PR00987 Glutamyl-tRNA synthetase signature 17 28 2.1E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 45 2.1E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 PRINTS PR00987 Glutamyl-tRNA synthetase signature 176 186 2.1E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 PRINTS PR00987 Glutamyl-tRNA synthetase signature 3 15 2.1E-14 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_0832 8e9810e0b001637143bb4557c7950d95 432 Gene3D G3DSA:3.40.50.620 1 311 8.0E-90 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2530 2bfadf679e589aa576aabe6e61de119b 830 Gene3D G3DSA:1.20.1640.10 242 422 5.9E-8 T 13-10-2018 SJPD1_2530 2bfadf679e589aa576aabe6e61de119b 830 Gene3D G3DSA:1.20.1640.10 643 827 9.1E-6 T 13-10-2018 SJPD1_2530 2bfadf679e589aa576aabe6e61de119b 830 SUPERFAMILY SSF82866 263 417 2.09E-24 T 13-10-2018 SJPD1_2530 2bfadf679e589aa576aabe6e61de119b 830 SUPERFAMILY SSF82866 606 820 4.71E-24 T 13-10-2018 SJPD1_2530 2bfadf679e589aa576aabe6e61de119b 830 Pfam PF03176 MMPL family 218 415 5.1E-9 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 SJPD1_2530 2bfadf679e589aa576aabe6e61de119b 830 Pfam PF03176 MMPL family 598 819 1.2E-6 T 13-10-2018 IPR004869 Membrane transport protein MMPL domain GO:0016020 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 46 820 0.0 T 13-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 Gene3D G3DSA:3.40.50.740 89 567 9.1E-229 T 13-10-2018 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 SUPERFAMILY SSF50692 672 819 2.07E-44 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 Pfam PF00384 Molybdopterin oxidoreductase 89 559 1.2E-86 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 Gene3D G3DSA:2.40.40.20 651 814 3.1E-53 T 13-10-2018 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 Gene3D G3DSA:3.90.55.10 84 617 9.1E-229 T 13-10-2018 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 Pfam PF01568 Molydopterin dinucleotide binding domain 677 795 1.6E-25 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 SUPERFAMILY SSF53706 47 673 9.42E-166 T 13-10-2018 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 Gene3D G3DSA:3.40.228.10 182 643 9.1E-229 T 13-10-2018 SJPD1_0904 5cf41781509eb6ebc7b468b2e7b4067f 822 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 501 518 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 SJPD1_1376 db61314cb9cee2290a15d3588ff43db8 564 Pfam PF01740 STAS domain 453 550 1.2E-13 T 13-10-2018 IPR002645 STAS domain SJPD1_1376 db61314cb9cee2290a15d3588ff43db8 564 TIGRFAM TIGR00815 sulP: sulfate permease 16 551 2.5E-118 T 13-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 SJPD1_1376 db61314cb9cee2290a15d3588ff43db8 564 Pfam PF00916 Sulfate permease family 23 387 5.3E-84 T 13-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 SJPD1_1376 db61314cb9cee2290a15d3588ff43db8 564 Gene3D G3DSA:3.30.750.24 438 563 1.0E-30 T 13-10-2018 IPR036513 STAS domain superfamily SJPD1_1376 db61314cb9cee2290a15d3588ff43db8 564 SUPERFAMILY SSF52091 453 557 6.47E-18 T 13-10-2018 IPR036513 STAS domain superfamily SJPD1_1375 2957ffd6d3942b9ac17fcb12703bf9b9 250 Pfam PF09674 Protein of unknown function (DUF2400) 29 246 2.4E-66 T 13-10-2018 IPR014127 Conserved hypothetical protein CHP02757 SJPD1_1375 2957ffd6d3942b9ac17fcb12703bf9b9 250 TIGRFAM TIGR02757 TIGR02757: TIGR02757 family protein 27 247 1.0E-75 T 13-10-2018 IPR014127 Conserved hypothetical protein CHP02757 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 SUPERFAMILY SSF53067 153 333 3.0E-47 T 13-10-2018 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 Gene3D G3DSA:3.30.420.40 157 320 1.3E-127 T 13-10-2018 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 5.8E-63 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 5.8E-63 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 5.8E-63 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 5.8E-63 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 5.8E-63 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 SUPERFAMILY SSF53067 10 151 7.87E-39 T 13-10-2018 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 Pfam PF06723 MreB/Mbl protein 12 339 2.6E-145 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 Gene3D G3DSA:3.90.640.10 189 262 1.3E-127 T 13-10-2018 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 Gene3D G3DSA:3.30.420.40 15 330 1.3E-127 T 13-10-2018 SJPD1_0224 6f8a0a824be30af34b97984c46dba0b0 344 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 339 4.5E-156 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2636 10a494d363697bb8d48ed5cb07b3f3ea 245 Pfam PF09347 Domain of unknown function (DUF1989) 18 190 4.9E-43 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 SJPD1_2636 10a494d363697bb8d48ed5cb07b3f3ea 245 TIGRFAM TIGR03425 urea_degr_2: urea carboxylase-associated protein 2 14 245 4.7E-84 T 13-10-2018 IPR017792 Urea carboxylase-associated protein 2 SJPD1_2626 2b1c6c34bab95cc828a7945a03730811 110 Pfam PF02411 MerT mercuric transport protein 8 105 5.1E-10 T 13-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 SJPD1_0267 5ef255bafe2d016cac8494ea12f87fc4 314 PIRSF PIRSF002849 1 314 2.0E-126 T 13-10-2018 SJPD1_0267 5ef255bafe2d016cac8494ea12f87fc4 314 SUPERFAMILY SSF52540 3 286 9.94E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0267 5ef255bafe2d016cac8494ea12f87fc4 314 Gene3D G3DSA:1.10.8.300 194 311 7.4E-34 T 13-10-2018 SJPD1_0267 5ef255bafe2d016cac8494ea12f87fc4 314 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 34 164 1.2E-64 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 SJPD1_0267 5ef255bafe2d016cac8494ea12f87fc4 314 Gene3D G3DSA:3.40.50.300 15 179 2.0E-44 T 13-10-2018 SJPD1_2749 e88a70f61781804013b2c3d9e64088ee 328 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 139 312 3.1E-28 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_2749 e88a70f61781804013b2c3d9e64088ee 328 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 243 1.3E-53 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_2749 e88a70f61781804013b2c3d9e64088ee 328 Gene3D G3DSA:2.40.30.170 166 247 1.4E-16 T 13-10-2018 SJPD1_2749 e88a70f61781804013b2c3d9e64088ee 328 SUPERFAMILY SSF111369 74 247 8.89E-13 T 13-10-2018 SJPD1_2749 e88a70f61781804013b2c3d9e64088ee 328 Gene3D G3DSA:2.40.420.20 248 328 1.2E-17 T 13-10-2018 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 Gene3D G3DSA:3.40.50.10990 219 352 1.2E-8 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 Pfam PF00925 GTP cyclohydrolase II 304 347 2.9E-7 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 12 213 36.852 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 19 208 2.0E-77 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 Gene3D G3DSA:3.90.870.10 3 216 8.4E-81 T 13-10-2018 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 SUPERFAMILY SSF55821 13 212 4.35E-78 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 14 209 1.5E-72 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 PIRSF PIRSF001259 12 305 2.5E-78 T 13-10-2018 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 PIRSF PIRSF001259 298 355 4.5E-8 T 13-10-2018 SJPD1_1501 fba2c19ee0396291daf55a3df1620a45 356 SUPERFAMILY SSF142695 214 348 9.42E-20 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 SUPERFAMILY SSF52949 1 163 7.06E-17 T 13-10-2018 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 PRINTS PR00481 Cytosol aminopeptidase signature 263 284 1.6E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 PRINTS PR00481 Cytosol aminopeptidase signature 241 258 1.6E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 PRINTS PR00481 Cytosol aminopeptidase signature 350 365 1.6E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 PRINTS PR00481 Cytosol aminopeptidase signature 322 342 1.6E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 PRINTS PR00481 Cytosol aminopeptidase signature 300 321 1.6E-49 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 SUPERFAMILY SSF53187 161 478 1.04E-109 T 13-10-2018 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 41 125 7.1E-9 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 Gene3D G3DSA:3.40.220.10 1 148 8.0E-36 T 13-10-2018 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 326 333 - T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 165 472 1.5E-113 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 4 482 32.863 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 SJPD1_1127 8cf9b920526747c561206b15406999cf 483 Gene3D G3DSA:3.40.630.10 149 482 4.6E-134 T 13-10-2018 SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 SUPERFAMILY SSF53218 168 303 1.31E-23 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 Pfam PF03453 MoeA N-terminal region (domain I and II) 3 157 1.2E-25 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 Gene3D G3DSA:3.40.980.10 165 308 5.1E-60 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 Pfam PF00994 Probable molybdopterin binding domain 171 298 6.9E-17 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 Gene3D G3DSA:2.170.190.11 46 131 5.1E-60 T 13-10-2018 SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 Gene3D G3DSA:3.90.105.10 23 164 5.1E-60 T 13-10-2018 SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 SUPERFAMILY SSF63882 3 166 1.57E-28 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 Gene3D G3DSA:2.40.340.10 309 372 5.1E-60 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0193 8e3691af78534e1e1ec189c924aafc89 384 SMART SM00852 170 299 6.3E-11 T 13-10-2018 IPR001453 MoaB/Mog domain SJPD1_1150 46c5820aa3378fc9af6583f7234ca0a3 215 Pfam PF13525 Outer membrane lipoprotein 29 180 7.2E-20 T 13-10-2018 IPR039565 Outer membrane lipoprotein BamD-like SJPD1_1150 46c5820aa3378fc9af6583f7234ca0a3 215 Gene3D G3DSA:1.25.40.10 31 195 6.9E-19 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1150 46c5820aa3378fc9af6583f7234ca0a3 215 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 6 183 8.2E-26 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD SJPD1_1327 72de74130471324a4a3afecde5d5a993 86 SMART SM00530 22 80 4.9E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1327 72de74130471324a4a3afecde5d5a993 86 Pfam PF01381 Helix-turn-helix 24 80 2.6E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1327 72de74130471324a4a3afecde5d5a993 86 Gene3D G3DSA:1.10.260.40 9 83 1.6E-13 T 13-10-2018 SJPD1_1327 72de74130471324a4a3afecde5d5a993 86 SUPERFAMILY SSF47413 14 83 1.94E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Gene3D G3DSA:3.40.50.740 102 522 5.7E-110 T 13-10-2018 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 461 478 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 SUPERFAMILY SSF53706 44 674 7.2E-135 T 13-10-2018 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 SUPERFAMILY SSF50692 646 807 1.29E-26 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Pfam PF00384 Molybdopterin oxidoreductase 100 519 3.5E-56 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Gene3D G3DSA:3.40.228.10 186 375 5.7E-110 T 13-10-2018 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Pfam PF01568 Molydopterin dinucleotide binding domain 685 800 4.2E-18 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 43 96 5.2E-9 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Gene3D G3DSA:2.40.40.20 669 807 1.5E-39 T 13-10-2018 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 SMART SM00926 43 97 7.8E-13 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2864 45042a43214b4b4b0cf3d82dcbe0dbe2 807 Gene3D G3DSA:2.20.25.90 38 101 5.0E-21 T 13-10-2018 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 SMART SM00304 211 264 1.9E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 SUPERFAMILY SSF58104 233 541 7.98E-56 T 13-10-2018 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 2.1E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 2.1E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 2.1E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 SMART SM00283 272 526 1.3E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 357 502 1.1E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1632 01ca42de71f4669f1e1e5b2ea8600084 541 Gene3D G3DSA:1.10.287.950 211 541 2.7E-55 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:3.30.2090.10 179 269 1.2E-283 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82693 40 134 1.74E-22 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:3.30.2090.10 701 789 1.2E-283 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:3.30.70.1430 40 797 1.2E-283 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:3.30.70.1430 557 649 1.2E-283 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82693 555 650 4.71E-17 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82714 183 264 6.67E-14 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Pfam PF00873 AcrB/AcrD/AcrF family 6 1006 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82866 811 1007 5.49E-40 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:3.30.70.1320 135 326 1.2E-283 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82714 703 786 6.02E-15 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:1.20.1640.10 503 1005 1.2E-283 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82866 291 491 3.27E-47 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.3E-79 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:1.20.1640.10 10 502 1.2E-283 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 Gene3D G3DSA:3.30.70.1440 650 847 1.2E-283 T 13-10-2018 SJPD1_2702 e4e50bfca8232c26676a58983e37a917 1021 SUPERFAMILY SSF82693 136 324 2.79E-20 T 13-10-2018 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 SMART SM00830 8 87 2.9E-30 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 PIRSF PIRSF001500 1 354 1.9E-122 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Gene3D G3DSA:3.30.70.260 268 353 4.9E-25 T 13-10-2018 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Gene3D G3DSA:3.40.190.10 91 262 2.5E-53 T 13-10-2018 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 SUPERFAMILY SSF55021 259 351 1.16E-20 T 13-10-2018 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 SUPERFAMILY SSF48600 1 82 1.11E-22 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 302 309 - T 13-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Gene3D G3DSA:1.20.59.10 1 87 2.2E-27 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Pfam PF00800 Prephenate dehydratase 89 264 2.8E-59 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Gene3D G3DSA:3.40.190.10 169 253 2.5E-53 T 13-10-2018 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Pfam PF01842 ACT domain 277 338 1.7E-8 T 13-10-2018 IPR002912 ACT domain SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 TIGRFAM TIGR01807 CM_P2: chorismate mutase 5 77 9.7E-26 T 13-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 Pfam PF01817 Chorismate mutase type II 8 84 7.4E-26 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 SJPD1_0252 6a68af64a4b0684f6df427fba6ee2cae 355 SUPERFAMILY SSF53850 88 265 9.44E-55 T 13-10-2018 SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 Hamap MF_00163 Peptide deformylase [def]. 1 166 27.097 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 PIRSF PIRSF004749 1 171 1.9E-48 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 SUPERFAMILY SSF56420 1 168 1.57E-52 T 13-10-2018 IPR036821 Peptide deformylase superfamily SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 3 165 1.1E-52 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 Pfam PF01327 Polypeptide deformylase 4 156 2.0E-45 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 Gene3D G3DSA:3.90.45.10 1 163 1.5E-55 T 13-10-2018 IPR036821 Peptide deformylase superfamily SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 PRINTS PR01576 Peptide deformylase signature 124 153 8.1E-33 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 PRINTS PR01576 Peptide deformylase signature 32 61 8.1E-33 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 PRINTS PR01576 Peptide deformylase signature 105 123 8.1E-33 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2672 732f5ce1879908c4866ff375194f8ab7 171 PRINTS PR01576 Peptide deformylase signature 93 104 8.1E-33 T 13-10-2018 IPR023635 Peptide deformylase SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 ProSitePatterns PS01015 Ribosomal protein L19 signature. 89 104 - T 13-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 PIRSF PIRSF002191 1 118 9.5E-44 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 PRINTS PR00061 Ribosomal protein L19 signature 36 65 3.3E-35 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 PRINTS PR00061 Ribosomal protein L19 signature 91 116 3.3E-35 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 PRINTS PR00061 Ribosomal protein L19 signature 6 35 3.3E-35 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 SUPERFAMILY SSF50104 2 117 3.11E-40 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 Gene3D G3DSA:2.30.30.790 7 118 7.0E-16 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 3 117 30.627 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 Pfam PF01245 Ribosomal protein L19 5 115 1.6E-43 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2033 2e6a1ae2c680fc427870c2c460ab7333 118 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 4 116 3.1E-46 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 77 91 - T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 Pfam PF01168 Alanine racemase, N-terminal domain 15 224 3.6E-21 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 SUPERFAMILY SSF51419 4 224 6.98E-61 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 PIRSF PIRSF004848 3 225 5.2E-66 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 Gene3D G3DSA:3.20.20.10 1 225 4.8E-67 T 13-10-2018 IPR029066 PLP-binding barrel SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 8 225 5.7E-64 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 SJPD1_1443 0aaa90112064b58fae8691a5c1654990 225 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 8 225 24.224 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 SJPD1_2771 695225e5c724f31e013271a960b0547f 477 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 315 476 7.9E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2771 695225e5c724f31e013271a960b0547f 477 SMART SM00267 306 477 9.8E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2771 695225e5c724f31e013271a960b0547f 477 Gene3D G3DSA:3.30.450.20 159 286 7.2E-7 T 13-10-2018 SJPD1_2771 695225e5c724f31e013271a960b0547f 477 SUPERFAMILY SSF55073 322 476 3.53E-41 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2771 695225e5c724f31e013271a960b0547f 477 Gene3D G3DSA:3.30.70.270 307 477 2.7E-48 T 13-10-2018 SJPD1_2771 695225e5c724f31e013271a960b0547f 477 Pfam PF00990 Diguanylate cyclase, GGDEF domain 318 472 7.2E-40 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2707 a03330b4885696a4ce0c225a7c0dc329 486 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 30 237 1.4E-19 T 13-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 SJPD1_2401 1b3ae79d7a8333a631b7a49c953f8778 369 PIRSF PIRSF000524 1 368 1.6E-94 T 13-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 SJPD1_2401 1b3ae79d7a8333a631b7a49c953f8778 369 Gene3D G3DSA:3.90.1150.10 7 354 3.9E-87 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2401 1b3ae79d7a8333a631b7a49c953f8778 369 Gene3D G3DSA:3.40.640.10 12 250 3.9E-87 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2401 1b3ae79d7a8333a631b7a49c953f8778 369 Pfam PF00266 Aminotransferase class-V 3 322 3.8E-23 T 13-10-2018 IPR000192 Aminotransferase class V domain SJPD1_2401 1b3ae79d7a8333a631b7a49c953f8778 369 SUPERFAMILY SSF53383 2 350 1.48E-74 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2401 1b3ae79d7a8333a631b7a49c953f8778 369 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 175 195 - T 13-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site SJPD1_2391 c9496b0e480df81edf28e749d204fd44 488 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 8 485 2.1E-216 T 13-10-2018 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 SJPD1_2391 c9496b0e480df81edf28e749d204fd44 488 SUPERFAMILY SSF81442 9 485 2.62E-116 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2391 c9496b0e480df81edf28e749d204fd44 488 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 454 2.3E-110 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2391 c9496b0e480df81edf28e749d204fd44 488 Gene3D G3DSA:1.20.210.10 1 484 3.1E-180 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2391 c9496b0e480df81edf28e749d204fd44 488 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 215 270 - T 13-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0877 b2b90967874a7b6a86afb9a898110920 174 SUPERFAMILY SSF48695 52 158 3.54E-33 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_0877 b2b90967874a7b6a86afb9a898110920 174 Gene3D G3DSA:1.10.1130.10 69 138 9.1E-27 T 13-10-2018 SJPD1_0877 b2b90967874a7b6a86afb9a898110920 174 PIRSF PIRSF006105 1 167 4.0E-45 T 13-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB SJPD1_0877 b2b90967874a7b6a86afb9a898110920 174 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 25 151 2.6E-38 T 13-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 SUPERFAMILY SSF51278 108 217 2.62E-47 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 Hamap MF_01954 Urease subunit beta [ureB]. 107 207 31.213 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 Pfam PF00547 Urease, gamma subunit 3 99 1.5E-39 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 2.0E-29 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 PIRSF PIRSF001225 1 225 3.5E-94 T 13-10-2018 IPR008223 Urease, gamma-beta subunit GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 Gene3D G3DSA:2.10.150.10 108 227 3.4E-47 T 13-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 Pfam PF00699 Urease beta subunit 109 205 6.4E-43 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 3 100 1.4E-44 T 13-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 Gene3D G3DSA:3.30.280.10 1 100 9.2E-40 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 108 208 4.0E-44 T 13-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_2508 d7995e5e976526ff570e9bbfc7ef5244 228 SUPERFAMILY SSF54111 3 101 1.31E-38 T 13-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 SUPERFAMILY SSF52540 287 524 6.27E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 SUPERFAMILY SSF90123 2 273 3.14E-67 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 Gene3D G3DSA:1.20.1560.10 1 277 2.9E-76 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 Pfam PF00005 ABC transporter 306 454 1.5E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 Gene3D G3DSA:3.40.50.300 280 522 7.8E-82 T 13-10-2018 SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 SMART SM00382 315 505 2.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1450 5b030e82c5d1f78be9af2bc1a5ffe83e 525 Pfam PF00664 ABC transporter transmembrane region 8 246 1.1E-45 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 469 2.6E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 Gene3D G3DSA:3.30.565.10 326 471 4.6E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 SUPERFAMILY SSF55874 325 471 1.51E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 Pfam PF11845 Protein of unknown function (DUF3365) 12 200 2.3E-28 T 13-10-2018 IPR021796 Protein of unknown function DUF3365 SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 Gene3D G3DSA:1.10.287.130 240 323 1.5E-10 T 13-10-2018 SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 SMART SM00387 366 471 2.3E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1069 d10ada5c2fbf1511c8a37be422d03cb5 471 SUPERFAMILY SSF47384 248 321 1.8E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 SUPERFAMILY SSF46548 4 152 1.1E-31 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 SUPERFAMILY SSF51971 140 393 1.24E-66 T 13-10-2018 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 Gene3D G3DSA:1.10.1060.10 3 140 3.2E-28 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 128 2.8E-31 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 Gene3D G3DSA:3.50.50.60 141 241 4.1E-12 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 Gene3D G3DSA:3.50.50.60 242 392 1.5E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 PRINTS PR00419 Adrenodoxin reductase family signature 316 329 3.6E-31 T 13-10-2018 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 PRINTS PR00419 Adrenodoxin reductase family signature 143 165 3.6E-31 T 13-10-2018 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 PRINTS PR00419 Adrenodoxin reductase family signature 208 218 3.6E-31 T 13-10-2018 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 PRINTS PR00419 Adrenodoxin reductase family signature 166 179 3.6E-31 T 13-10-2018 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 PRINTS PR00419 Adrenodoxin reductase family signature 282 296 3.6E-31 T 13-10-2018 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 3 457 1.2E-168 T 13-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 SJPD1_0640 bd663e3706e6bc9263467d757aa09e0c 460 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 142 447 5.1E-30 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SJPD1_1270 14da80723437df4a1ac6f2e31f9e0a83 200 Gene3D G3DSA:2.60.120.10 5 149 1.7E-28 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_1270 14da80723437df4a1ac6f2e31f9e0a83 200 SUPERFAMILY SSF51206 22 141 5.37E-19 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 SMART SM01204 280 407 1.8E-21 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 SUPERFAMILY SSF58104 462 656 3.27E-46 T 13-10-2018 SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 SMART SM00283 451 667 7.2E-24 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 Gene3D G3DSA:1.10.287.950 448 664 1.5E-43 T 13-10-2018 SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 517 647 1.0E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 SMART SM00897 48 273 1.4E-34 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 Pfam PF08495 FIST N domain 51 259 2.1E-20 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_1679 b344dec5ee3b8ff895b2326dea3a1e1c 671 Pfam PF10442 FIST C domain 292 404 7.8E-12 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 88 1.4E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 4 24 1.4E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 390 468 2.4E-26 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Gene3D G3DSA:3.40.50.300 1 190 1.1E-38 T 13-10-2018 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 SUPERFAMILY SSF52540 3 166 3.28E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 SUPERFAMILY SSF52540 206 470 2.7E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 467 3.3E-144 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Gene3D G3DSA:3.40.50.300 210 387 2.0E-47 T 13-10-2018 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Gene3D G3DSA:3.30.300.20 389 471 6.9E-26 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 PIRSF PIRSF006485 1 477 2.2E-141 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Hamap MF_00195 GTPase Der [der]. 1 472 32.362 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Pfam PF01926 50S ribosome-binding GTPase 3 117 6.3E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 Pfam PF01926 50S ribosome-binding GTPase 217 334 3.1E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 153 1.7E-25 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2210 6cc1b801bd17d7fcf17706be4c8f4cbf 485 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 214 379 1.0E-26 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2161 e4b604d7bd0cd18fa50ff0614d53510b 376 Hamap MF_02040 Iron-sulfur cluster carrier protein. 92 341 35.367 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein SJPD1_2161 e4b604d7bd0cd18fa50ff0614d53510b 376 SUPERFAMILY SSF117916 1 92 1.31E-13 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_2161 e4b604d7bd0cd18fa50ff0614d53510b 376 Gene3D G3DSA:3.40.50.300 84 339 1.9E-78 T 13-10-2018 SJPD1_2161 e4b604d7bd0cd18fa50ff0614d53510b 376 SUPERFAMILY SSF52540 101 349 2.79E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2161 e4b604d7bd0cd18fa50ff0614d53510b 376 Pfam PF01883 Iron-sulfur cluster assembly protein 4 72 2.1E-9 T 13-10-2018 IPR002744 MIP18 family-like SJPD1_2161 e4b604d7bd0cd18fa50ff0614d53510b 376 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 98 340 9.3E-94 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 SJPD1_0319 40896dd7661ff77b9f08618f7231b261 224 Gene3D G3DSA:3.30.1150.10 99 223 1.9E-14 T 13-10-2018 SJPD1_0319 40896dd7661ff77b9f08618f7231b261 224 SUPERFAMILY SSF74653 124 207 2.88E-11 T 13-10-2018 SJPD1_0319 40896dd7661ff77b9f08618f7231b261 224 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 148 202 6.9E-12 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 SJPD1_0319 40896dd7661ff77b9f08618f7231b261 224 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 150 199 3.8E-7 T 13-10-2018 IPR006260 TonB/TolA, C-terminal SJPD1_0808 b0e7974cef52f757b6f4d31093c4eca6 510 SMART SM00382 21 482 1.9E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0808 b0e7974cef52f757b6f4d31093c4eca6 510 Gene3D G3DSA:3.40.50.300 1 215 2.0E-11 T 13-10-2018 SJPD1_0808 b0e7974cef52f757b6f4d31093c4eca6 510 SUPERFAMILY SSF52540 2 469 1.58E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0808 b0e7974cef52f757b6f4d31093c4eca6 510 Pfam PF13175 AAA ATPase domain 2 453 6.5E-9 T 13-10-2018 SJPD1_0808 b0e7974cef52f757b6f4d31093c4eca6 510 PIRSF PIRSF003128 1 510 3.7E-102 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 SJPD1_0808 b0e7974cef52f757b6f4d31093c4eca6 510 Gene3D G3DSA:3.40.50.300 231 510 1.2E-33 T 13-10-2018 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 2 594 1.4E-175 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 Pfam PF03717 Penicillin-binding Protein dimerisation domain 47 222 2.7E-27 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 Gene3D G3DSA:3.30.1390.30 67 148 3.3E-32 T 13-10-2018 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 Gene3D G3DSA:3.40.710.10 232 598 3.8E-86 T 13-10-2018 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 SUPERFAMILY SSF56519 39 235 4.32E-32 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 Gene3D G3DSA:3.90.1310.10 46 229 3.3E-32 T 13-10-2018 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 Pfam PF00905 Penicillin binding protein transpeptidase domain 254 590 3.0E-61 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 SJPD1_0820 24396f61bfeeb1b8f3b797bc4095632b 601 SUPERFAMILY SSF56601 237 595 1.46E-84 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 SUPERFAMILY SSF69765 226 384 2.88E-55 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 Hamap MF_01520 Bifunctional enzyme IspD/IspF [ispDF]. 15 382 35.654 T 13-10-2018 IPR026596 Bifunctional enzyme IspD/IspF KEGG: 00900+4.6.1.12+2.7.7.60|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 Gene3D G3DSA:3.90.550.10 16 220 5.2E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 226 381 30.313 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 Gene3D G3DSA:3.30.1330.50 226 387 8.2E-60 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 260 275 - T 13-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 18 214 1.5E-33 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 Pfam PF02542 YgbB family 228 379 2.0E-54 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 228 379 1.9E-52 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 19 215 3.5E-55 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 SJPD1_2162 1a69fa5a34c303891a7117266b9042fc 387 SUPERFAMILY SSF53448 17 215 5.39E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0306 3b996d035a09fc2d01dd2780f32cad4e 190 Pfam PF13247 4Fe-4S dicluster domain 53 148 1.5E-18 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0306 3b996d035a09fc2d01dd2780f32cad4e 190 Gene3D G3DSA:3.30.70.20 5 180 1.1E-56 T 13-10-2018 SJPD1_0306 3b996d035a09fc2d01dd2780f32cad4e 190 Gene3D G3DSA:3.30.70.20 66 118 1.1E-56 T 13-10-2018 SJPD1_0306 3b996d035a09fc2d01dd2780f32cad4e 190 SUPERFAMILY SSF54862 3 184 2.3E-61 T 13-10-2018 SJPD1_0306 3b996d035a09fc2d01dd2780f32cad4e 190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 92 103 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 SUPERFAMILY SSF55136 122 280 1.57E-28 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 93 109 1.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 78 93 1.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 Gene3D G3DSA:1.10.10.60 61 116 2.0E-12 T 13-10-2018 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 SUPERFAMILY SSF46689 11 60 1.51E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 64 105 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 Pfam PF12833 Helix-turn-helix domain 33 109 4.6E-19 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 SMART SM00342 27 109 1.9E-25 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 SUPERFAMILY SSF46689 64 112 1.16E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 Gene3D G3DSA:1.10.10.60 1 60 1.4E-17 T 13-10-2018 SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 Gene3D G3DSA:3.20.80.10 122 281 5.9E-37 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 SMART SM00871 121 281 7.9E-30 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding SJPD1_0027 5e190bcaebc860f8921e6464311aaa40 281 Pfam PF06445 GyrI-like small molecule binding domain 122 280 9.6E-30 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Pfam PF00989 PAS fold 151 261 1.3E-15 T 13-10-2018 IPR013767 PAS fold GO:0006355 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Gene3D G3DSA:3.30.450.20 433 563 2.6E-32 T 13-10-2018 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 137 1.5E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 444 561 5.9E-18 T 13-10-2018 IPR000014 PAS domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 146 269 1.5E-21 T 13-10-2018 IPR000014 PAS domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Gene3D G3DSA:3.30.450.20 145 275 1.1E-22 T 13-10-2018 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Pfam PF08448 PAS fold 27 132 8.3E-9 T 13-10-2018 IPR013656 PAS fold-4 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Pfam PF13426 PAS domain 451 552 6.4E-16 T 13-10-2018 IPR000014 PAS domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SUPERFAMILY SSF55785 33 137 1.4E-14 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SUPERFAMILY SSF55073 570 728 6.98E-50 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Gene3D G3DSA:3.30.450.40 276 432 1.3E-5 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 561 725 1.9E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Pfam PF00990 Diguanylate cyclase, GGDEF domain 565 722 5.7E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SUPERFAMILY SSF55781 262 431 4.71E-6 T 13-10-2018 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SUPERFAMILY SSF55785 448 551 4.83E-27 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00267 554 726 1.6E-66 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00086 90 130 69.0 T 13-10-2018 IPR001610 PAC motif SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00086 222 264 1.4E-7 T 13-10-2018 IPR001610 PAC motif SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00086 512 554 8.8E-4 T 13-10-2018 IPR001610 PAC motif SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Gene3D G3DSA:3.30.70.270 564 732 1.2E-56 T 13-10-2018 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 Gene3D G3DSA:3.30.450.20 23 144 2.9E-16 T 13-10-2018 SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SUPERFAMILY SSF55785 140 261 4.05E-22 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00091 440 506 3.0E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00091 149 215 7.6E-9 T 13-10-2018 IPR000014 PAS domain SJPD1_0684 64386d54a60f5000fc8ae3a3747833d1 732 SMART SM00091 19 86 1.2E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 278 8.1E-129 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 SUPERFAMILY SSF52096 24 277 9.95E-82 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 4 279 38.189 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 Gene3D G3DSA:3.90.226.10 23 283 3.1E-86 T 13-10-2018 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 161 179 7.1E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 198 215 7.1E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 227 238 7.1E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 127 141 7.1E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 249 258 7.1E-38 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 SJPD1_0642 bce7f1ce73886500b79f0af598097920 292 Pfam PF01039 Carboxyl transferase domain 58 238 3.8E-20 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 SJPD1_1236 b512fc595c86e06135fc6caecdb3a849 450 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 40 433 2.5E-89 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1236 b512fc595c86e06135fc6caecdb3a849 450 SUPERFAMILY SSF53807 12 443 1.08E-114 T 13-10-2018 SJPD1_1236 b512fc595c86e06135fc6caecdb3a849 450 Gene3D G3DSA:3.40.50.12380 179 441 9.2E-86 T 13-10-2018 SJPD1_1236 b512fc595c86e06135fc6caecdb3a849 450 Gene3D G3DSA:3.40.50.1980 27 178 4.8E-42 T 13-10-2018 SJPD1_2421 5a05ea741fe338aeb6ac7c656b1289e8 134 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 3 127 3.7E-39 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2421 5a05ea741fe338aeb6ac7c656b1289e8 134 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 129 13.878 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 SJPD1_2421 5a05ea741fe338aeb6ac7c656b1289e8 134 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 122 9.6E-20 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P SJPD1_2421 5a05ea741fe338aeb6ac7c656b1289e8 134 SUPERFAMILY SSF52080 4 124 1.96E-29 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily SJPD1_0971 65e9fbaf9833957261659247861aa3ba 789 Pfam PF13476 AAA domain 5 254 2.3E-21 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain SJPD1_0971 65e9fbaf9833957261659247861aa3ba 789 SUPERFAMILY SSF52540 1 783 3.02E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0971 65e9fbaf9833957261659247861aa3ba 789 Gene3D G3DSA:3.40.50.300 1 258 5.5E-34 T 13-10-2018 SJPD1_0971 65e9fbaf9833957261659247861aa3ba 789 Gene3D G3DSA:3.40.50.300 556 789 4.5E-30 T 13-10-2018 SJPD1_1557 163895dee6b2496bcbf24770816bf5df 72 SUPERFAMILY SSF47413 5 55 5.35E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_1557 163895dee6b2496bcbf24770816bf5df 72 Gene3D G3DSA:1.10.260.40 6 65 5.1E-6 T 13-10-2018 SJPD1_1775 e006fff38745f7a94bd4c9847c3b32b5 578 SUPERFAMILY SSF52833 2 128 8.97E-31 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1775 e006fff38745f7a94bd4c9847c3b32b5 578 Pfam PF03190 Protein of unknown function, DUF255 3 165 7.6E-64 T 13-10-2018 IPR004879 Domain of unknown function DUF255 SJPD1_1775 e006fff38745f7a94bd4c9847c3b32b5 578 Gene3D G3DSA:3.40.30.10 2 172 2.1E-61 T 13-10-2018 SJPD1_1775 e006fff38745f7a94bd4c9847c3b32b5 578 SUPERFAMILY SSF48208 191 506 4.01E-45 T 13-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 SJPD1_1775 e006fff38745f7a94bd4c9847c3b32b5 578 PIRSF PIRSF006402 1 578 1.2E-175 T 13-10-2018 IPR024705 Spermatogenesis-associated protein 20 SJPD1_1888 049ca7a70808805767e421d2f0da8fbd 373 SUPERFAMILY SSF81891 153 288 4.05E-20 T 13-10-2018 SJPD1_1888 049ca7a70808805767e421d2f0da8fbd 373 Gene3D G3DSA:3.30.460.10 10 147 5.7E-22 T 13-10-2018 SJPD1_1888 049ca7a70808805767e421d2f0da8fbd 373 SUPERFAMILY SSF81301 13 143 2.83E-24 T 13-10-2018 SJPD1_1888 049ca7a70808805767e421d2f0da8fbd 373 Gene3D G3DSA:1.10.3090.10 148 372 2.2E-20 T 13-10-2018 SJPD1_1888 049ca7a70808805767e421d2f0da8fbd 373 Pfam PF01743 Poly A polymerase head domain 29 147 1.0E-15 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 SJPD1_2248 bb88d72d9c3b0b0e8a80e14c3c54d008 269 Gene3D G3DSA:3.90.550.10 1 236 1.6E-45 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2248 bb88d72d9c3b0b0e8a80e14c3c54d008 269 SUPERFAMILY SSF53448 1 256 2.45E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2248 bb88d72d9c3b0b0e8a80e14c3c54d008 269 Pfam PF00535 Glycosyl transferase family 2 4 149 1.4E-22 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2248 bb88d72d9c3b0b0e8a80e14c3c54d008 269 Pfam PF02709 N-terminal domain of galactosyltransferase 167 228 4.6E-16 T 13-10-2018 IPR027791 Galactosyltransferase, C-terminal Reactome: R-HSA-2022854|Reactome: R-HSA-975577 SJPD1_2692 59c1366bc59b9e15bb710f62581e2b28 662 Gene3D G3DSA:3.40.50.300 448 643 1.6E-45 T 13-10-2018 SJPD1_2692 59c1366bc59b9e15bb710f62581e2b28 662 Gene3D G3DSA:3.40.50.300 124 299 6.1E-20 T 13-10-2018 SJPD1_2692 59c1366bc59b9e15bb710f62581e2b28 662 Pfam PF01935 Domain of unknown function DUF87 146 499 3.5E-19 T 13-10-2018 IPR002789 Helicase HerA, central domain SJPD1_2692 59c1366bc59b9e15bb710f62581e2b28 662 SUPERFAMILY SSF52540 146 634 1.58E-32 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1087 b4f9b7f3f3fb9932518903aca99debb5 296 SUPERFAMILY SSF54001 7 277 4.63E-38 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_1087 b4f9b7f3f3fb9932518903aca99debb5 296 SMART SM00460 181 251 7.5E-17 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1087 b4f9b7f3f3fb9932518903aca99debb5 296 Pfam PF01841 Transglutaminase-like superfamily 147 249 3.1E-18 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1087 b4f9b7f3f3fb9932518903aca99debb5 296 Gene3D G3DSA:3.10.620.30 93 286 1.1E-43 T 13-10-2018 SJPD1_1087 b4f9b7f3f3fb9932518903aca99debb5 296 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 82 5.8E-21 T 13-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal SJPD1_2207 420fd99489f545a6bacb291ea43de4dc 266 Pfam PF00793 DAHP synthetase I family 2 254 1.1E-59 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 SJPD1_2207 420fd99489f545a6bacb291ea43de4dc 266 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 1 266 47.092 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 SJPD1_2207 420fd99489f545a6bacb291ea43de4dc 266 SUPERFAMILY SSF51569 2 265 2.01E-89 T 13-10-2018 SJPD1_2207 420fd99489f545a6bacb291ea43de4dc 266 Gene3D G3DSA:3.20.20.70 1 266 6.4E-94 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2207 420fd99489f545a6bacb291ea43de4dc 266 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 2 264 1.3E-113 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 Gene3D G3DSA:1.20.1090.10 165 347 3.6E-60 T 13-10-2018 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 PIRSF PIRSF001455 2 348 1.7E-102 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 SUPERFAMILY SSF56796 26 344 1.19E-102 T 13-10-2018 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 Pfam PF01761 3-dehydroquinate synthase 59 312 1.1E-102 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 343 63.2 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 Gene3D G3DSA:3.40.50.1970 1 164 1.4E-58 T 13-10-2018 SJPD1_1656 04f848481e64a48b043fbf28fc8a661d 348 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 22 342 3.0E-110 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 SUPERFAMILY SSF53335 10 302 9.22E-81 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 Pfam PF12161 HsdM N-terminal domain 11 139 2.5E-25 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 Gene3D G3DSA:1.20.1260.30 1 142 4.1E-42 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 173 189 2.1E-14 T 13-10-2018 SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 270 282 2.1E-14 T 13-10-2018 SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 196 210 2.1E-14 T 13-10-2018 SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 Gene3D G3DSA:3.40.50.150 150 326 3.0E-60 T 13-10-2018 SJPD1_2689 88b1da059719df389a013c19ae518d7c 333 Pfam PF02384 N-6 DNA Methylase 150 307 1.1E-56 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 SJPD1_2094 4c528ae1b176fe3157cfc61893456ea1 304 Pfam PF06719 AraC-type transcriptional regulator N-terminus 30 180 1.0E-43 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal SJPD1_2094 4c528ae1b176fe3157cfc61893456ea1 304 SUPERFAMILY SSF46689 194 243 1.88E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2094 4c528ae1b176fe3157cfc61893456ea1 304 SMART SM00342 210 293 7.0E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2094 4c528ae1b176fe3157cfc61893456ea1 304 Gene3D G3DSA:1.10.10.60 191 298 3.5E-27 T 13-10-2018 SJPD1_2094 4c528ae1b176fe3157cfc61893456ea1 304 Pfam PF12833 Helix-turn-helix domain 216 294 7.4E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2094 4c528ae1b176fe3157cfc61893456ea1 304 SUPERFAMILY SSF46689 246 296 4.66E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 Pfam PF00563 EAL domain 616 851 3.7E-68 T 13-10-2018 IPR001633 EAL domain SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 SMART SM00267 424 600 5.8E-52 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 SUPERFAMILY SSF55781 259 423 1.08E-6 T 13-10-2018 SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 Gene3D G3DSA:3.30.70.270 431 613 1.6E-53 T 13-10-2018 SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 Gene3D G3DSA:3.30.450.40 266 430 5.9E-6 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 434 599 3.2E-38 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 Pfam PF11845 Protein of unknown function (DUF3365) 17 196 3.7E-33 T 13-10-2018 IPR021796 Protein of unknown function DUF3365 SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 SUPERFAMILY SSF141868 616 853 1.29E-82 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 Gene3D G3DSA:3.20.20.450 614 857 1.3E-90 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 SMART SM00052 610 856 9.3E-103 T 13-10-2018 IPR001633 EAL domain SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 SUPERFAMILY SSF55073 440 602 6.51E-44 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1752 8fac874a1c3626dca6c276172be5fd90 857 Pfam PF00990 Diguanylate cyclase, GGDEF domain 436 596 2.5E-43 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1622 55465af24e0dbb0e79ac210bf1b214d1 125 ProDom PD006096 DELTA SUBUNIT NITROGENASE DINITROGENASE OXIDOREDUCTASE VANADIUM FIXATION METAL-BINDING IRON CHAIN 17 120 2.0E-33 T 13-10-2018 IPR004349 Vanadium/alternative nitrogenase delta subunit GO:0009399|GO:0016163|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1622 55465af24e0dbb0e79ac210bf1b214d1 125 Pfam PF03139 Vanadium/alternative nitrogenase delta subunit 17 125 1.7E-49 T 13-10-2018 IPR004349 Vanadium/alternative nitrogenase delta subunit GO:0009399|GO:0016163|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1622 55465af24e0dbb0e79ac210bf1b214d1 125 TIGRFAM TIGR02929 anfG_nitrog: Fe-only nitrogenase, delta subunit 17 125 3.7E-52 T 13-10-2018 IPR014278 Nitrogenase iron-iron, delta subunit GO:0005506|GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 117 3.4E-29 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 89 97 7.0E-8 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 7.0E-8 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 98 107 7.0E-8 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 SUPERFAMILY SSF81330 10 124 6.67E-28 T 13-10-2018 IPR036019 Gated mechanosensitive channel SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 115 1.2E-32 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 Gene3D G3DSA:1.10.1200.120 1 127 7.6E-29 T 13-10-2018 IPR036019 Gated mechanosensitive channel SJPD1_0490 3b7ccbb10feca73f150fab9a0a11caf3 142 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 1 136 19.838 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 SUPERFAMILY SSF55073 178 333 1.49E-49 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 Pfam PF00989 PAS fold 5 74 5.6E-5 T 13-10-2018 IPR013767 PAS fold GO:0006355 SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 Pfam PF00990 Diguanylate cyclase, GGDEF domain 173 330 5.7E-51 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 SUPERFAMILY SSF55785 5 74 3.32E-7 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 171 332 1.1E-46 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 SMART SM00267 162 334 3.4E-60 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 Gene3D G3DSA:3.30.450.20 3 128 6.1E-19 T 13-10-2018 SJPD1_2453 5d5fd5ec338a61f0fb27869f8535f160 334 Gene3D G3DSA:3.30.70.270 168 334 1.5E-57 T 13-10-2018 SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 Pfam PF01411 tRNA synthetases class II (A) 13 87 2.7E-9 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 SMART SM00863 166 208 1.7E-7 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 Gene3D G3DSA:2.40.30.130 1 83 1.3E-18 T 13-10-2018 SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 SUPERFAMILY SSF55186 84 211 1.01E-28 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 SUPERFAMILY SSF50447 3 83 2.22E-15 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 Gene3D G3DSA:3.30.980.10 84 212 1.8E-29 T 13-10-2018 SJPD1_0871 07023223049d84f292530f97a91ca2d6 213 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 178 208 5.5E-6 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 ProSitePatterns PS01312 SecA family signature. 485 500 - T 13-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Pfam PF02810 SEC-C motif 832 850 8.8E-10 T 13-10-2018 IPR004027 SEC-C motif SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 SMART SM00958 231 343 3.5E-63 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 29 502 2.0E-229 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 SUPERFAMILY SSF81886 576 840 1.12E-65 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Hamap MF_01382 Protein translocase subunit SecA [secA]. 6 786 19.419 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Gene3D G3DSA:3.10.450.50 780 851 3.8E-10 T 13-10-2018 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Pfam PF01043 SecA preprotein cross-linking domain 238 343 6.3E-38 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 SUPERFAMILY SSF52540 401 574 2.34E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Gene3D G3DSA:3.40.50.300 18 401 0.0 T 13-10-2018 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Gene3D G3DSA:3.90.1440.10 232 353 0.0 T 13-10-2018 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Gene3D G3DSA:3.40.50.300 402 575 0.0 T 13-10-2018 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 SUPERFAMILY SSF52540 5 400 6.52E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 SMART SM00957 7 387 2.7E-263 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Pfam PF07516 SecA Wing and Scaffold domain 574 781 1.3E-54 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Gene3D G3DSA:1.10.3060.10 576 779 0.0 T 13-10-2018 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 SUPERFAMILY SSF81767 230 353 3.14E-44 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Pfam PF07517 SecA DEAD-like domain 8 386 4.1E-124 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 103 117 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 119 129 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 398 411 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 65 89 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 324 346 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 173 193 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 PRINTS PR00906 SecA protein signature 361 378 1.3E-66 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 SJPD1_1750 dc66defecb1f65d9481490935c2a4202 859 Gene3D G3DSA:1.10.1200.230 626 710 0.0 T 13-10-2018 SJPD1_1497 968b1623a99854c084fe3b90a28d2197 154 SUPERFAMILY SSF48695 62 147 1.35E-13 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_1497 968b1623a99854c084fe3b90a28d2197 154 Pfam PF14537 Cytochrome c3 57 142 3.6E-15 T 13-10-2018 IPR012286 Tetrahaem cytochrome domain KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 SJPD1_1497 968b1623a99854c084fe3b90a28d2197 154 Gene3D G3DSA:1.10.1130.10 52 152 1.1E-17 T 13-10-2018 SJPD1_0605 9a45ff9c0bacc20b55502eb2be000206 229 Pfam PF08241 Methyltransferase domain 41 131 1.5E-11 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 SJPD1_0605 9a45ff9c0bacc20b55502eb2be000206 229 Gene3D G3DSA:2.20.25.110 135 193 1.1E-30 T 13-10-2018 SJPD1_0605 9a45ff9c0bacc20b55502eb2be000206 229 SUPERFAMILY SSF53335 13 206 1.47E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0605 9a45ff9c0bacc20b55502eb2be000206 229 Gene3D G3DSA:3.40.50.150 16 201 1.1E-30 T 13-10-2018 SJPD1_0201 d787b5d5c8e8454f64e76968c0f64faf 403 SUPERFAMILY SSF53383 7 400 1.81E-104 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0201 d787b5d5c8e8454f64e76968c0f64faf 403 Pfam PF00155 Aminotransferase class I and II 34 392 4.1E-63 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_0201 d787b5d5c8e8454f64e76968c0f64faf 403 Gene3D G3DSA:3.90.1150.10 298 395 2.1E-121 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_0201 d787b5d5c8e8454f64e76968c0f64faf 403 Gene3D G3DSA:3.40.640.10 67 297 2.1E-121 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2870 e1abadea4371a554d6fc601e62b156ea 187 SUPERFAMILY SSF54862 1 186 2.09E-57 T 13-10-2018 SJPD1_2870 e1abadea4371a554d6fc601e62b156ea 187 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 96 107 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2870 e1abadea4371a554d6fc601e62b156ea 187 Gene3D G3DSA:3.30.70.20 4 186 2.1E-56 T 13-10-2018 SJPD1_2870 e1abadea4371a554d6fc601e62b156ea 187 Pfam PF13247 4Fe-4S dicluster domain 58 153 3.0E-21 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2870 e1abadea4371a554d6fc601e62b156ea 187 Gene3D G3DSA:3.30.70.20 70 122 2.1E-56 T 13-10-2018 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 Gene3D G3DSA:3.40.630.10 10 354 6.2E-99 T 13-10-2018 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 94 128 - T 13-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 Pfam PF07687 Peptidase dimerisation domain 168 268 4.4E-17 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 2 367 42.119 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 365 5.4E-127 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 SUPERFAMILY SSF55031 172 276 2.24E-22 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 SUPERFAMILY SSF53187 6 365 8.3E-53 T 13-10-2018 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 Pfam PF01546 Peptidase family M20/M25/M40 61 364 1.5E-35 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 SJPD1_0602 36be56681d7e206beed301c2d95ca636 370 Gene3D G3DSA:3.30.70.360 172 283 6.2E-99 T 13-10-2018 SJPD1_0995 53e2e9941c2b96056cac829e76892121 161 Gene3D G3DSA:1.10.760.10 81 150 3.7E-13 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0995 53e2e9941c2b96056cac829e76892121 161 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 84 146 3.0E-6 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0995 53e2e9941c2b96056cac829e76892121 161 SUPERFAMILY SSF46626 82 147 2.29E-13 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Gene3D G3DSA:3.40.50.300 52 307 3.1E-105 T 13-10-2018 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 SMART SM00994 3 42 1.9E-13 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Pfam PF06689 ClpX C4-type zinc finger 5 39 2.3E-11 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 406 48.06 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 SMART SM01086 309 403 1.1E-31 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 SUPERFAMILY SSF57716 5 38 1.07E-7 T 13-10-2018 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 4 401 3.3E-186 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 SMART SM00382 107 269 2.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 310 380 6.2E-15 T 13-10-2018 IPR019489 Clp ATPase, C-terminal SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Gene3D G3DSA:1.10.8.60 308 410 8.7E-39 T 13-10-2018 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Pfam PF07724 AAA domain (Cdc48 subfamily) 108 302 4.8E-47 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 SUPERFAMILY SSF52540 58 394 2.08E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0223 21cc76bebafadcccc831977b1596e64a 410 Gene3D G3DSA:3.30.50.30 3 43 2.4E-9 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily SJPD1_0302 ee286d6c422d2d6cd01d74ca74f1a2b4 334 SUPERFAMILY SSF46626 187 282 1.69E-17 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0302 ee286d6c422d2d6cd01d74ca74f1a2b4 334 Pfam PF00034 Cytochrome c 194 279 9.1E-9 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0302 ee286d6c422d2d6cd01d74ca74f1a2b4 334 Gene3D G3DSA:1.10.760.10 38 175 1.1E-43 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0302 ee286d6c422d2d6cd01d74ca74f1a2b4 334 Gene3D G3DSA:1.10.760.10 180 302 1.3E-35 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0302 ee286d6c422d2d6cd01d74ca74f1a2b4 334 SUPERFAMILY SSF46626 83 169 5.34E-25 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0433 7291319527204419ed56153c03e2daa0 52 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 17.374 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0433 7291319527204419ed56153c03e2daa0 52 Gene3D G3DSA:2.20.28.120 1 50 2.5E-20 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0433 7291319527204419ed56153c03e2daa0 52 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 51 4.4E-22 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0433 7291319527204419ed56153c03e2daa0 52 Pfam PF00471 Ribosomal protein L33 3 49 3.6E-20 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0433 7291319527204419ed56153c03e2daa0 52 SUPERFAMILY SSF57829 1 49 5.95E-18 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 SJPD1_0433 7291319527204419ed56153c03e2daa0 52 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 13-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1932 30f50b98d6821a3279197ad7940d08e0 484 Gene3D G3DSA:1.10.4100.10 28 460 1.9E-181 T 13-10-2018 SJPD1_1932 30f50b98d6821a3279197ad7940d08e0 484 Gene3D G3DSA:3.30.1330.120 289 427 1.9E-181 T 13-10-2018 SJPD1_1932 30f50b98d6821a3279197ad7940d08e0 484 SUPERFAMILY SSF103378 15 482 3.53E-149 T 13-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 SJPD1_1932 30f50b98d6821a3279197ad7940d08e0 484 Pfam PF03972 MmgE/PrpD family 20 467 7.7E-147 T 13-10-2018 IPR005656 MmgE/PrpD GO:0016829 SJPD1_1932 30f50b98d6821a3279197ad7940d08e0 484 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 16 484 3.0E-263 T 13-10-2018 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 SJPD1_1012 716eb7a4adc02907f8513dd8b9430235 126 SMART SM00530 9 63 0.0028 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1012 716eb7a4adc02907f8513dd8b9430235 126 Pfam PF01381 Helix-turn-helix 10 61 1.1E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1012 716eb7a4adc02907f8513dd8b9430235 126 SUPERFAMILY SSF47413 1 60 2.34E-6 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_1012 716eb7a4adc02907f8513dd8b9430235 126 Gene3D G3DSA:1.10.260.40 1 66 7.9E-9 T 13-10-2018 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 1 458 30.636 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 SUPERFAMILY SSF52374 1 296 4.29E-107 T 13-10-2018 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 1.7E-23 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 47 1.7E-23 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 1.7E-23 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 PRINTS PR00987 Glutamyl-tRNA synthetase signature 5 17 1.7E-23 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 30 1.7E-23 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 SUPERFAMILY SSF48163 299 458 9.02E-33 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 Gene3D G3DSA:1.10.10.350 364 462 1.2E-21 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 19 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 Gene3D G3DSA:3.40.50.620 1 314 6.4E-127 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 458 5.9E-170 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 SJPD1_2780 f2743b6737cac5bbaa29a1bcb9d3004b 463 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 4.4E-102 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 SJPD1_1350 7ebbe0cfbcc32eb4776d4a58c6632143 150 SUPERFAMILY SSF102114 32 147 8.63E-11 T 13-10-2018 SJPD1_1350 7ebbe0cfbcc32eb4776d4a58c6632143 150 Gene3D G3DSA:3.20.20.70 50 145 2.7E-6 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2597 f046ebc4196f4a186ba743af9d9b55a3 235 SUPERFAMILY SSF51182 5 232 3.24E-65 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_2597 f046ebc4196f4a186ba743af9d9b55a3 235 PIRSF PIRSF006232 1 233 7.5E-49 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 SJPD1_2597 f046ebc4196f4a186ba743af9d9b55a3 235 Pfam PF02678 Pirin 11 119 2.2E-30 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 SJPD1_2597 f046ebc4196f4a186ba743af9d9b55a3 235 Gene3D G3DSA:2.60.120.10 12 135 9.5E-79 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2597 f046ebc4196f4a186ba743af9d9b55a3 235 Gene3D G3DSA:2.60.120.10 8 233 9.5E-79 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_1581 f42db2dc3c6a36215a6b077169199860 393 SUPERFAMILY SSF58104 84 393 9.02E-61 T 13-10-2018 SJPD1_1581 f42db2dc3c6a36215a6b077169199860 393 SMART SM00283 131 392 3.5E-41 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1581 f42db2dc3c6a36215a6b077169199860 393 Gene3D G3DSA:1.10.287.950 62 393 6.6E-57 T 13-10-2018 SJPD1_1581 f42db2dc3c6a36215a6b077169199860 393 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 211 305 4.7E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1581 f42db2dc3c6a36215a6b077169199860 393 SMART SM00304 62 116 2.1E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0052 737aba5208626d194866308b800b6493 96 Gene3D G3DSA:1.10.260.40 2 94 5.5E-26 T 13-10-2018 SJPD1_0052 737aba5208626d194866308b800b6493 96 Pfam PF01381 Helix-turn-helix 17 66 5.2E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0052 737aba5208626d194866308b800b6493 96 SUPERFAMILY SSF47413 8 87 1.35E-20 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0052 737aba5208626d194866308b800b6493 96 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 3 82 1.3E-28 T 13-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 SJPD1_0052 737aba5208626d194866308b800b6493 96 SMART SM00530 12 68 0.0014 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1143 87068f001acdede053f23d252c7838ea 605 SUPERFAMILY SSF52540 278 546 1.31E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1143 87068f001acdede053f23d252c7838ea 605 SMART SM00487 227 407 1.6E-18 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_1143 87068f001acdede053f23d252c7838ea 605 SUPERFAMILY SSF50249 11 147 2.06E-6 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1143 87068f001acdede053f23d252c7838ea 605 SMART SM00490 452 531 8.3E-10 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1143 87068f001acdede053f23d252c7838ea 605 Pfam PF00271 Helicase conserved C-terminal domain 419 531 2.7E-10 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_1143 87068f001acdede053f23d252c7838ea 605 Gene3D G3DSA:2.40.50.140 44 124 1.6E-5 T 13-10-2018 SJPD1_1143 87068f001acdede053f23d252c7838ea 605 Pfam PF00270 DEAD/DEAH box helicase 233 384 2.2E-11 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_1143 87068f001acdede053f23d252c7838ea 605 Gene3D G3DSA:3.40.50.300 405 568 2.3E-34 T 13-10-2018 SJPD1_1143 87068f001acdede053f23d252c7838ea 605 Gene3D G3DSA:3.40.50.300 185 399 1.0E-49 T 13-10-2018 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 Gene3D G3DSA:2.30.30.30 120 197 1.7E-31 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 PIRSF PIRSF002158 7 276 6.8E-95 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 116 2.4E-29 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 SMART SM01383 42 118 5.8E-43 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 5.8E-56 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 Gene3D G3DSA:2.40.50.140 1 114 1.9E-39 T 13-10-2018 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 Gene3D G3DSA:4.10.950.10 198 274 3.5E-33 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 13-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 SMART SM01382 125 253 3.2E-90 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 2.0E-128 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 SUPERFAMILY SSF50249 2 118 9.6E-41 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 44.737 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 SJPD1_2435 1a9be8999db54022ab88e07eccd2b438 276 SUPERFAMILY SSF50104 127 273 2.23E-60 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily SJPD1_1351 caf3977c06bf72f7230cb43605984d6e 209 SUPERFAMILY SSF55469 4 206 4.71E-55 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_1351 caf3977c06bf72f7230cb43605984d6e 209 Pfam PF00881 Nitroreductase family 10 188 1.5E-30 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 SJPD1_1351 caf3977c06bf72f7230cb43605984d6e 209 Gene3D G3DSA:3.40.109.10 3 207 6.5E-56 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 Pfam PF03129 Anticodon binding domain 330 400 2.3E-6 T 13-10-2018 IPR004154 Anticodon-binding SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 SUPERFAMILY SSF55681 2 311 1.73E-89 T 13-10-2018 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 SUPERFAMILY SSF52954 321 400 2.62E-13 T 13-10-2018 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 Pfam PF13393 Histidyl-tRNA synthetase 7 307 1.6E-42 T 13-10-2018 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 4 398 1.4E-135 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 402 27.602 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 Gene3D G3DSA:3.30.930.10 1 318 2.8E-106 T 13-10-2018 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 PIRSF PIRSF001549 1 402 5.8E-107 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 SJPD1_1626 cd1e811dc2bf7c0e12b3860deba662ab 402 Gene3D G3DSA:3.40.50.800 323 402 1.5E-13 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily SJPD1_2676 9a436e537b6cc2334d82318cf368f326 263 Hamap MF_00443 Thiazole synthase [thiG]. 4 258 41.886 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 SJPD1_2676 9a436e537b6cc2334d82318cf368f326 263 Pfam PF05690 Thiazole biosynthesis protein ThiG 7 252 1.7E-102 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 SJPD1_2676 9a436e537b6cc2334d82318cf368f326 263 Gene3D G3DSA:3.20.20.70 2 262 5.4E-105 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2676 9a436e537b6cc2334d82318cf368f326 263 SUPERFAMILY SSF110399 3 243 5.49E-82 T 13-10-2018 SJPD1_1520 fa555cb5b57cd8ef3914cf3925c58a3a 303 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 4 284 1.5E-64 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 SJPD1_1520 fa555cb5b57cd8ef3914cf3925c58a3a 303 Pfam PF03186 CobD/Cbib protein 8 280 2.4E-84 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 SJPD1_1520 fa555cb5b57cd8ef3914cf3925c58a3a 303 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 303 70.52 T 13-10-2018 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 Gene3D G3DSA:3.30.565.10 421 570 3.0E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 461 569 1.8E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 Gene3D G3DSA:1.10.287.130 336 414 9.9E-12 T 13-10-2018 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 SMART SM00387 458 570 3.7E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 513 1.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 567 1.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 527 1.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 548 1.3E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 SUPERFAMILY SSF47384 342 419 2.75E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 Pfam PF05228 CHASE4 domain 56 198 3.8E-17 T 13-10-2018 IPR007892 CHASE4 SJPD1_2338 f3feac4beae06df3683d61fa15932347 571 SUPERFAMILY SSF55874 420 567 9.04E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1485 b7726ae66ac3e220a61d398aa5e6e706 241 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 16 84 5.5E-14 T 13-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 SJPD1_1485 b7726ae66ac3e220a61d398aa5e6e706 241 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 5 234 34.9 T 13-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 SJPD1_1485 b7726ae66ac3e220a61d398aa5e6e706 241 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 104 228 3.1E-28 T 13-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 SJPD1_1485 b7726ae66ac3e220a61d398aa5e6e706 241 SUPERFAMILY SSF55729 77 228 2.12E-21 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_1485 b7726ae66ac3e220a61d398aa5e6e706 241 PIRSF PIRSF037208 2 240 3.0E-70 T 13-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 SJPD1_1827 2db693c8b671c70e2bb642bd3552773f 192 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 30 190 1.1E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1827 2db693c8b671c70e2bb642bd3552773f 192 SUPERFAMILY SSF55073 39 189 7.85E-45 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1827 2db693c8b671c70e2bb642bd3552773f 192 Pfam PF00990 Diguanylate cyclase, GGDEF domain 34 186 4.0E-43 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1827 2db693c8b671c70e2bb642bd3552773f 192 SMART SM00267 23 191 3.2E-56 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1827 2db693c8b671c70e2bb642bd3552773f 192 Gene3D G3DSA:3.30.70.270 23 191 4.0E-51 T 13-10-2018 SJPD1_2400 623c23942bb9e2d4d17578add50df5ff 284 Gene3D G3DSA:3.30.930.10 3 282 1.4E-34 T 13-10-2018 SJPD1_2400 623c23942bb9e2d4d17578add50df5ff 284 SUPERFAMILY SSF55681 5 279 4.11E-35 T 13-10-2018 SJPD1_2400 623c23942bb9e2d4d17578add50df5ff 284 Pfam PF13393 Histidyl-tRNA synthetase 17 259 8.2E-18 T 13-10-2018 SJPD1_0792 988d799b1cd56cd206c06b2405cb45fb 223 SMART SM00382 30 217 5.3E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0792 988d799b1cd56cd206c06b2405cb45fb 223 Pfam PF00005 ABC transporter 22 168 7.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0792 988d799b1cd56cd206c06b2405cb45fb 223 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0792 988d799b1cd56cd206c06b2405cb45fb 223 SUPERFAMILY SSF52540 4 222 1.18E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0792 988d799b1cd56cd206c06b2405cb45fb 223 Gene3D G3DSA:3.40.50.300 1 221 4.1E-55 T 13-10-2018 SJPD1_0942 2ca35f8f4995bd47bfbb52db6b541bac 444 Pfam PF01471 Putative peptidoglycan binding domain 393 442 1.5E-14 T 13-10-2018 IPR002477 Peptidoglycan binding-like SJPD1_0942 2ca35f8f4995bd47bfbb52db6b541bac 444 Gene3D G3DSA:1.10.101.10 378 444 1.6E-14 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 SJPD1_0942 2ca35f8f4995bd47bfbb52db6b541bac 444 SUPERFAMILY SSF47090 392 442 1.88E-14 T 13-10-2018 IPR036365 PGBD-like superfamily SJPD1_1592 acbeffa5a64a0ab91d9d8b04b5c9053d 194 SMART SM00382 31 194 6.1E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1592 acbeffa5a64a0ab91d9d8b04b5c9053d 194 Pfam PF00005 ABC transporter 22 147 1.6E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1592 acbeffa5a64a0ab91d9d8b04b5c9053d 194 SUPERFAMILY SSF52540 4 192 5.72E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1592 acbeffa5a64a0ab91d9d8b04b5c9053d 194 Gene3D G3DSA:3.40.50.300 3 194 1.0E-49 T 13-10-2018 SJPD1_2882 4cb6ac1821f7b4635a683db22ef6cd39 249 Pfam PF01797 Transposase IS200 like 13 122 9.0E-16 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SJPD1_2882 4cb6ac1821f7b4635a683db22ef6cd39 249 SUPERFAMILY SSF143422 7 127 1.96E-27 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 SJPD1_2882 4cb6ac1821f7b4635a683db22ef6cd39 249 Gene3D G3DSA:3.30.70.1290 1 167 1.5E-33 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 SJPD1_2882 4cb6ac1821f7b4635a683db22ef6cd39 249 SMART SM01321 8 122 5.8E-38 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SJPD1_0862 e181596bb0e4616536d706dd95e28aa7 286 Pfam PF00892 EamA-like transporter family 3 128 9.5E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0862 e181596bb0e4616536d706dd95e28aa7 286 SUPERFAMILY SSF103481 181 262 7.32E-6 T 13-10-2018 SJPD1_0630 a384219041d6e156cc299f2fb2968f6b 422 Pfam PF07676 WD40-like Beta Propeller Repeat 290 307 0.052 T 13-10-2018 IPR011659 WD40-like Beta Propeller SJPD1_0630 a384219041d6e156cc299f2fb2968f6b 422 SUPERFAMILY SSF69304 178 422 7.06E-32 T 13-10-2018 SJPD1_0630 a384219041d6e156cc299f2fb2968f6b 422 Gene3D G3DSA:2.120.10.30 162 422 1.3E-31 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 PIRSF PIRSF001586 1 223 1.0E-80 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 Gene3D G3DSA:3.40.50.880 1 223 1.7E-69 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 3 208 2.4E-48 T 13-10-2018 SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 SUPERFAMILY SSF52317 1 222 5.28E-72 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 222 2.2E-90 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 SMART SM01211 1 221 7.2E-113 T 13-10-2018 SJPD1_1770 aa22aba2b99f1718fbfed98e9fff617b 223 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 223 40.681 T 13-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 SJPD1_0713 4e447bf0d0891b966b2d4397e8145abc 208 Pfam PF02602 Uroporphyrinogen-III synthase HemD 13 202 1.5E-27 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_0713 4e447bf0d0891b966b2d4397e8145abc 208 Gene3D G3DSA:3.40.50.10090 24 130 4.6E-40 T 13-10-2018 SJPD1_0713 4e447bf0d0891b966b2d4397e8145abc 208 SUPERFAMILY SSF69618 13 205 1.7E-35 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 SJPD1_0713 4e447bf0d0891b966b2d4397e8145abc 208 Gene3D G3DSA:3.40.50.10090 22 206 4.6E-40 T 13-10-2018 SJPD1_2204 326bb376a0640b9443d758bc98d91c7f 135 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 4 130 8.3E-39 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 SJPD1_2204 326bb376a0640b9443d758bc98d91c7f 135 Gene3D G3DSA:1.10.940.10 1 135 4.0E-39 T 13-10-2018 IPR035926 NusB-like superfamily SJPD1_2204 326bb376a0640b9443d758bc98d91c7f 135 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 2 133 20.812 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 SJPD1_2204 326bb376a0640b9443d758bc98d91c7f 135 Pfam PF01029 NusB family 5 130 5.4E-33 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 SJPD1_2204 326bb376a0640b9443d758bc98d91c7f 135 SUPERFAMILY SSF48013 3 131 3.14E-37 T 13-10-2018 IPR035926 NusB-like superfamily SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 SUPERFAMILY SSF51905 1 258 3.8E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Gene3D G3DSA:1.10.10.1800 456 546 6.8E-9 T 13-10-2018 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 9.4E-5 T 13-10-2018 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 9.4E-5 T 13-10-2018 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 365 388 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Gene3D G3DSA:3.50.50.60 297 455 1.9E-60 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Gene3D G3DSA:3.50.50.60 1 216 6.4E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Pfam PF01134 Glucose inhibited division protein A 4 395 2.9E-159 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 1 620 40.313 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 9.5E-6 T 13-10-2018 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 9.5E-6 T 13-10-2018 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 3 616 8.3E-269 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Pfam PF13932 GidA associated domain 398 611 4.0E-72 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 270 284 - T 13-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 SMART SM01228 542 613 7.5E-34 T 13-10-2018 SJPD1_2271 e89ef6cc12190aaa0127222942d7f0ea 623 Gene3D G3DSA:1.10.150.570 565 617 6.7E-19 T 13-10-2018 SJPD1_1629 ff7a557e7801e635a7c12f7d825b3011 175 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 172 5.8E-47 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like SJPD1_1629 ff7a557e7801e635a7c12f7d825b3011 175 Gene3D G3DSA:3.40.50.1950 2 175 3.6E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 SJPD1_1629 ff7a557e7801e635a7c12f7d825b3011 175 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 174 30.845 T 13-10-2018 IPR004507 Flavin prenyltransferase UbiX-like SJPD1_1629 ff7a557e7801e635a7c12f7d825b3011 175 Pfam PF02441 Flavoprotein 2 152 3.3E-24 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 SJPD1_1629 ff7a557e7801e635a7c12f7d825b3011 175 SUPERFAMILY SSF52507 2 174 9.03E-54 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 Gene3D G3DSA:3.40.50.300 1 170 7.8E-46 T 13-10-2018 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 SUPERFAMILY SSF46785 562 610 2.04E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 Pfam PF00009 Elongation factor Tu GTP binding domain 5 165 7.4E-31 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 SUPERFAMILY SSF50447 174 263 2.55E-17 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 29 44 - T 13-10-2018 IPR031157 Tr-type G domain, conserved site SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 Gene3D G3DSA:1.10.10.10 553 611 2.5E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 SUPERFAMILY SSF50465 280 354 1.24E-8 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 Pfam PF09107 Elongation factor SelB, winged helix 565 610 2.6E-12 T 13-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 131 3.8E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 Gene3D G3DSA:2.40.30.10 174 288 7.5E-22 T 13-10-2018 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 5 610 6.1E-90 T 13-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 SJPD1_2593 4417282773746a9512041a12f7e1c17b 611 SUPERFAMILY SSF52540 5 193 3.87E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2114 d7c756b064ab1c50307df99c91a33c40 341 Pfam PF04909 Amidohydrolase 4 281 9.9E-19 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 SJPD1_2114 d7c756b064ab1c50307df99c91a33c40 341 Gene3D G3DSA:3.20.20.140 1 308 7.6E-33 T 13-10-2018 SJPD1_2114 d7c756b064ab1c50307df99c91a33c40 341 SUPERFAMILY SSF51556 2 287 5.61E-32 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_1907 de79b0fe95d83dcba660deceb2c76188 665 Gene3D G3DSA:2.40.170.20 142 665 5.6E-75 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_1907 de79b0fe95d83dcba660deceb2c76188 665 Gene3D G3DSA:2.170.130.10 33 141 1.4E-6 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_1907 de79b0fe95d83dcba660deceb2c76188 665 SUPERFAMILY SSF56935 17 665 4.4E-78 T 13-10-2018 SJPD1_1907 de79b0fe95d83dcba660deceb2c76188 665 Pfam PF00593 TonB dependent receptor 186 663 5.4E-34 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_1907 de79b0fe95d83dcba660deceb2c76188 665 Pfam PF07715 TonB-dependent Receptor Plug Domain 39 123 6.2E-8 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_0576 6a2737bf113f03d71deb8107b1b4097c 372 Gene3D G3DSA:3.40.50.2300 45 350 1.2E-87 T 13-10-2018 SJPD1_0576 6a2737bf113f03d71deb8107b1b4097c 372 SUPERFAMILY SSF53822 22 366 1.98E-76 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_0576 6a2737bf113f03d71deb8107b1b4097c 372 Gene3D G3DSA:3.40.50.2300 139 268 1.2E-87 T 13-10-2018 SJPD1_0576 6a2737bf113f03d71deb8107b1b4097c 372 Pfam PF13458 Periplasmic binding protein 23 354 5.6E-52 T 13-10-2018 IPR028081 Leucine-binding protein domain SJPD1_1101 054beb06aff7802931ca332d20cc5968 157 SUPERFAMILY SSF50475 4 156 6.92E-44 T 13-10-2018 SJPD1_1101 054beb06aff7802931ca332d20cc5968 157 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 13 154 4.9E-24 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related SJPD1_1101 054beb06aff7802931ca332d20cc5968 157 Gene3D G3DSA:2.30.110.10 1 156 1.7E-42 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 Pfam PF04715 Anthranilate synthase component I, N terminal region 10 161 6.1E-20 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 Pfam PF00425 chorismate binding enzyme 203 457 2.6E-91 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 Gene3D G3DSA:3.60.120.10 1 470 2.8E-142 T 13-10-2018 IPR005801 ADC synthase GO:0009058 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 SUPERFAMILY SSF56322 4 466 3.92E-131 T 13-10-2018 IPR005801 ADC synthase GO:0009058 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 PRINTS PR00095 Anthranilate synthase component I signature 399 413 1.3E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 PRINTS PR00095 Anthranilate synthase component I signature 319 332 1.3E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 PRINTS PR00095 Anthranilate synthase component I signature 414 428 1.3E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_0688 4be511b8702d093297b1bc1ca4719c72 470 PRINTS PR00095 Anthranilate synthase component I signature 305 318 1.3E-22 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_1315 0b40fa687d189c3427342c35d8fa9547 375 Pfam PF00248 Aldo/keto reductase family 36 360 1.1E-29 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_1315 0b40fa687d189c3427342c35d8fa9547 375 SUPERFAMILY SSF51430 27 363 2.75E-38 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_1315 0b40fa687d189c3427342c35d8fa9547 375 Gene3D G3DSA:3.20.20.100 26 374 6.9E-33 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_0885 8e6bc31b8be737e1c766eca95238414f 128 Gene3D G3DSA:3.30.420.130 1 108 6.7E-14 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_0885 8e6bc31b8be737e1c766eca95238414f 128 SUPERFAMILY SSF53146 2 107 1.96E-17 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_0885 8e6bc31b8be737e1c766eca95238414f 128 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 11 95 4.2E-10 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 TIGRFAM TIGR00277 HDIG: HDIG domain 329 406 3.3E-22 T 13-10-2018 IPR006675 HDIG domain SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 Pfam PF12072 Domain of unknown function (DUF3552) 13 201 1.1E-13 T 13-10-2018 IPR022711 Ribonuclease Y, N-terminal SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 SMART SM00322 205 272 0.0092 T 13-10-2018 IPR004087 K Homology domain GO:0003676 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 Pfam PF00013 KH domain 217 262 9.5E-5 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 Gene3D G3DSA:3.30.1370.10 205 297 2.3E-8 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 13 517 4.6E-180 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 Gene3D G3DSA:1.10.3210.10 313 457 7.6E-16 T 13-10-2018 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 SMART SM00471 329 435 3.6E-12 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 SUPERFAMILY SSF54791 206 293 2.25E-12 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 SUPERFAMILY SSF109604 310 468 4.94E-29 T 13-10-2018 SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 Pfam PF01966 HD domain 335 425 2.6E-17 T 13-10-2018 IPR006674 HD domain SJPD1_1177 b862e8aa6eac277622a6dba86f9e60a1 517 Hamap MF_00335 Ribonuclease Y [rny]. 2 517 22.545 T 13-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 254 392 3.0E-50 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 Pfam PF02772 S-adenosylmethionine synthetase, central domain 124 247 4.0E-28 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 8 401 1.2E-109 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 SUPERFAMILY SSF55973 6 120 9.65E-32 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 7 111 4.4E-29 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 PIRSF PIRSF000497 1 404 2.3E-135 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 SUPERFAMILY SSF55973 123 248 1.73E-30 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 Gene3D G3DSA:3.30.300.10 130 394 1.1E-132 T 13-10-2018 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 126 136 - T 13-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 SUPERFAMILY SSF55973 254 401 3.14E-49 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 Gene3D G3DSA:3.30.300.10 14 291 1.1E-132 T 13-10-2018 SJPD1_2010 a6fff4bc89f2a696853f7251bac987c5 404 Gene3D G3DSA:3.30.300.10 8 254 1.1E-132 T 13-10-2018 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 SMART SM00831 39 112 8.1E-10 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 SUPERFAMILY SSF81665 40 901 6.02E-90 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Pfam PF00690 Cation transporter/ATPase, N-terminus 43 107 2.1E-13 T 13-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 617 735 2.7E-25 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 272 418 1.2E-21 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Gene3D G3DSA:2.70.150.10 107 280 5.3E-37 T 13-10-2018 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Pfam PF00702 haloacid dehalogenase-like hydrolase 376 661 2.0E-17 T 13-10-2018 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 SUPERFAMILY SSF81653 178 280 4.84E-27 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 382 388 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Gene3D G3DSA:1.20.1110.10 281 395 4.2E-12 T 13-10-2018 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 32 902 0.0 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 808 829 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 775 791 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 858 879 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 705 720 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 414 427 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 310 329 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 293 309 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 723 734 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 PRINTS PR01836 Magnesium-transporting ATPase signature 755 768 7.5E-63 T 13-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Pfam PF00122 E1-E2 ATPase 177 360 5.7E-44 T 13-10-2018 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Gene3D G3DSA:3.40.1110.10 396 553 2.2E-56 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 SUPERFAMILY SSF81660 348 550 6.1E-41 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 SUPERFAMILY SSF56784 540 689 1.26E-35 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_2535 c48e6b1e39448634b28ee5f15b94bdbc 904 Gene3D G3DSA:3.40.50.1000 554 693 5.4E-28 T 13-10-2018 IPR023214 HAD superfamily SJPD1_2243 79096a608e51a27c53885dbb76aee47f 320 Gene3D G3DSA:3.40.50.2000 1 157 1.7E-47 T 13-10-2018 SJPD1_2243 79096a608e51a27c53885dbb76aee47f 320 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 274 6.3E-42 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 SJPD1_2243 79096a608e51a27c53885dbb76aee47f 320 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 317 9.2E-84 T 13-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 SJPD1_2243 79096a608e51a27c53885dbb76aee47f 320 Gene3D G3DSA:3.40.50.2000 159 300 8.8E-27 T 13-10-2018 SJPD1_2243 79096a608e51a27c53885dbb76aee47f 320 SUPERFAMILY SSF53756 1 318 6.91E-62 T 13-10-2018 SJPD1_2140 c0aff0677dcf046b5723df93c8614bdd 303 Pfam PF03547 Membrane transport protein 158 297 8.0E-11 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 SJPD1_2140 c0aff0677dcf046b5723df93c8614bdd 303 Gene3D G3DSA:1.20.1530.20 164 303 1.1E-7 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_1670 30eef01f529803ba36d75e0444e3c0fd 341 SUPERFAMILY SSF46689 289 334 8.96E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1670 30eef01f529803ba36d75e0444e3c0fd 341 SMART SM00342 254 335 4.5E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1670 30eef01f529803ba36d75e0444e3c0fd 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 26 209 5.4E-26 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal SJPD1_1670 30eef01f529803ba36d75e0444e3c0fd 341 Pfam PF12833 Helix-turn-helix domain 261 335 2.9E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1670 30eef01f529803ba36d75e0444e3c0fd 341 Gene3D G3DSA:1.10.10.60 233 340 1.8E-18 T 13-10-2018 SJPD1_1763 87b1dce3eaf7ea4a4793371619943313 159 Pfam PF03737 Aldolase/RraA 5 152 8.8E-36 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein SJPD1_1763 87b1dce3eaf7ea4a4793371619943313 159 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 153 2.2E-43 T 13-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 SJPD1_1763 87b1dce3eaf7ea4a4793371619943313 159 SUPERFAMILY SSF89562 3 156 4.32E-37 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily SJPD1_1763 87b1dce3eaf7ea4a4793371619943313 159 Gene3D G3DSA:3.50.30.40 1 159 8.9E-51 T 13-10-2018 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 Gene3D G3DSA:4.10.640.10 1 77 1.4E-22 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 74 8.0E-19 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 PRINTS PR00974 Ribosomal protein S18 family signature 29 39 3.3E-12 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 PRINTS PR00974 Ribosomal protein S18 family signature 39 46 3.3E-12 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 PRINTS PR00974 Ribosomal protein S18 family signature 47 61 3.3E-12 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 PRINTS PR00974 Ribosomal protein S18 family signature 61 71 3.3E-12 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 TIGRFAM TIGR00165 S18: ribosomal protein bS18 6 72 4.8E-30 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 1 74 18.138 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 SUPERFAMILY SSF46911 4 74 2.49E-23 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1152 1ca113be152d250cbca894ce227caffa 88 Pfam PF01084 Ribosomal protein S18 18 68 2.3E-21 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 Gene3D G3DSA:3.40.50.12160 7 139 1.3E-29 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 SUPERFAMILY SSF102114 115 370 2.62E-55 T 13-10-2018 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 Pfam PF01938 TRAM domain 381 437 1.9E-7 T 13-10-2018 IPR002792 TRAM domain SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 Pfam PF04055 Radical SAM superfamily 148 322 4.3E-27 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 8 437 4.1E-170 T 13-10-2018 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 Pfam PF00919 Uncharacterized protein family UPF0004 8 106 1.2E-25 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 148 168 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 Gene3D G3DSA:3.80.30.20 143 379 1.1E-81 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 SMART SM00729 144 366 3.3E-52 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 7 438 62.32 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 SJPD1_0539 8302568c144ef2c4a59d4866e718c62a 438 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 8 434 3.7E-136 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 SUPERFAMILY SSF56235 11 424 2.12E-131 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Pfam PF01493 GXGXG motif 1237 1418 1.7E-73 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Pfam PF01645 Conserved region in glutamate synthase 799 1160 7.0E-147 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Gene3D G3DSA:2.160.20.60 1208 1472 6.2E-98 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Gene3D G3DSA:3.20.20.70 426 797 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Gene3D G3DSA:3.20.20.70 477 1175 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 SUPERFAMILY SSF51395 446 1183 2.66E-228 T 13-10-2018 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 SUPERFAMILY SSF69336 1212 1466 2.35E-83 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Pfam PF00310 Glutamine amidotransferases class-II 11 421 8.5E-152 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Gene3D G3DSA:3.60.20.10 11 539 0.0 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_0639 6bd1e40dbaadfc6db73aff5bcfc616dd 1474 Pfam PF04898 Glutamate synthase central domain 452 736 7.5E-90 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 22 1497 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Pfam PF05000 RNA polymerase Rpb1, domain 4 670 749 6.5E-17 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 11 1507 18.951 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:1.10.1790.20 1266 1443 7.0E-63 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Pfam PF04998 RNA polymerase Rpb1, domain 5 752 1402 7.2E-69 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Pfam PF00623 RNA polymerase Rpb1, domain 2 397 495 8.4E-28 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Pfam PF00623 RNA polymerase Rpb1, domain 2 354 404 4.1E-9 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 SMART SM00663 245 524 1.8E-175 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:2.40.50.100 1282 1345 7.0E-63 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 SUPERFAMILY SSF64484 16 1495 0.0 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:1.10.40.90 384 426 1.6E-18 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:2.40.50.100 1167 1257 1.4E-16 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 352 3.0E-84 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:1.10.150.390 1446 1503 8.7E-24 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Pfam PF04983 RNA polymerase Rpb1, domain 3 499 641 8.7E-28 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:1.10.274.100 499 561 3.0E-22 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:1.10.274.100 562 637 2.7E-16 T 13-10-2018 SJPD1_0441 522296cb24ea56f2aeb2f76efdde2ff6 1508 Gene3D G3DSA:1.10.132.30 638 776 3.3E-65 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 Gene3D G3DSA:3.80.30.20 160 359 6.8E-21 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 Gene3D G3DSA:3.40.50.280 9 136 5.8E-8 T 13-10-2018 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 SUPERFAMILY SSF52242 43 131 1.1E-5 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 SMART SM00729 162 375 3.6E-11 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 SUPERFAMILY SSF102114 157 355 1.1E-33 T 13-10-2018 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 Pfam PF13311 Protein of unknown function (DUF4080) 357 488 2.5E-16 T 13-10-2018 IPR025288 Domain of unknown function DUF4080 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 Pfam PF02310 B12 binding domain 13 122 5.2E-12 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 SJPD1_1578 b271a260056bbef87901d5b59730e35c 504 Pfam PF04055 Radical SAM superfamily 167 322 2.0E-12 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2139 598362e3505a62059b28af18359c5e0c 231 Pfam PF02080 TrkA-C domain 156 226 2.9E-7 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 SJPD1_2139 598362e3505a62059b28af18359c5e0c 231 SUPERFAMILY SSF116726 142 226 9.55E-10 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_2139 598362e3505a62059b28af18359c5e0c 231 Pfam PF02254 TrkA-N domain 6 120 7.3E-16 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SJPD1_2139 598362e3505a62059b28af18359c5e0c 231 SUPERFAMILY SSF51735 4 144 8.21E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2139 598362e3505a62059b28af18359c5e0c 231 Gene3D G3DSA:3.40.50.720 1 142 3.9E-22 T 13-10-2018 SJPD1_2139 598362e3505a62059b28af18359c5e0c 231 Gene3D G3DSA:3.30.70.1450 154 228 5.1E-12 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_2798 5b4a5d5fc66afb517bb251ff410cc253 318 Pfam PF13489 Methyltransferase domain 119 260 1.2E-19 T 13-10-2018 SJPD1_2798 5b4a5d5fc66afb517bb251ff410cc253 318 Gene3D G3DSA:3.40.50.150 77 274 1.0E-32 T 13-10-2018 SJPD1_2798 5b4a5d5fc66afb517bb251ff410cc253 318 SUPERFAMILY SSF53335 116 265 2.5E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2086 152b98c9cb34773e0e675cfd4bf141b4 154 Gene3D G3DSA:2.60.120.10 23 153 1.4E-49 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2086 152b98c9cb34773e0e675cfd4bf141b4 154 Pfam PF07883 Cupin domain 63 126 1.7E-11 T 13-10-2018 IPR013096 Cupin 2, conserved barrel SJPD1_2086 152b98c9cb34773e0e675cfd4bf141b4 154 SUPERFAMILY SSF51182 32 152 2.1E-29 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_0505 4bd7ad730eca8c9310d0a18c40f6d507 260 SUPERFAMILY SSF81343 3 244 2.83E-74 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0505 4bd7ad730eca8c9310d0a18c40f6d507 260 Gene3D G3DSA:1.20.1300.10 1 249 2.3E-85 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0505 4bd7ad730eca8c9310d0a18c40f6d507 260 PIRSF PIRSF000177 1 255 1.1E-111 T 13-10-2018 IPR004224 Fumarate reductase type B, transmembrane subunit GO:0006099 SJPD1_0505 4bd7ad730eca8c9310d0a18c40f6d507 260 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 105 216 3.7E-15 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_2219 c054d24816466bb3f754d537b523fc86 275 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 5 274 27.684 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 SJPD1_2219 c054d24816466bb3f754d537b523fc86 275 PIRSF PIRSF000401 4 275 1.1E-63 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 SJPD1_2219 c054d24816466bb3f754d537b523fc86 275 Gene3D G3DSA:3.40.50.150 91 275 1.8E-46 T 13-10-2018 SJPD1_2219 c054d24816466bb3f754d537b523fc86 275 SUPERFAMILY SSF53335 54 255 1.21E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2219 c054d24816466bb3f754d537b523fc86 275 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 46 267 2.4E-55 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 SJPD1_2219 c054d24816466bb3f754d537b523fc86 275 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 49 274 5.5E-57 T 13-10-2018 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SUPERFAMILY SSF50249 619 703 7.46E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Pfam PF00575 S1 RNA binding domain 630 702 3.2E-16 T 13-10-2018 IPR003029 S1 domain GO:0003676 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SUPERFAMILY SSF47781 459 547 8.67E-24 T 13-10-2018 IPR010994 RuvA domain 2-like SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Pfam PF12836 Helix-hairpin-helix motif 480 544 3.5E-24 T 13-10-2018 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Pfam PF16921 Tex protein YqgF-like domain 315 439 6.3E-50 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SUPERFAMILY SSF158832 2 310 1.09E-84 T 13-10-2018 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SMART SM00316 630 702 6.4E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Gene3D G3DSA:1.10.3500.10 111 486 7.3E-128 T 13-10-2018 IPR023323 Tex-like domain superfamily SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Pfam PF09371 Tex-like protein N-terminal domain 9 189 5.6E-56 T 13-10-2018 IPR018974 Tex-like protein, N-terminal SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SUPERFAMILY SSF47781 550 612 1.89E-13 T 13-10-2018 IPR010994 RuvA domain 2-like SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Gene3D G3DSA:1.10.10.650 5 108 3.4E-33 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Gene3D G3DSA:1.10.150.310 488 611 1.8E-40 T 13-10-2018 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SMART SM00732 315 413 1.0E-30 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Gene3D G3DSA:2.40.50.140 617 704 1.6E-24 T 13-10-2018 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 Gene3D G3DSA:3.30.420.140 314 440 7.3E-128 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 SJPD1_2719 19a6100541b3e9854ab3e0ac9473533b 705 SUPERFAMILY SSF53098 311 458 1.67E-44 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 SUPERFAMILY SSF46626 199 281 9.87E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 41 88 2.9E-14 T 13-10-2018 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 PIRSF PIRSF000006 11 282 1.3E-56 T 13-10-2018 IPR004678 Cytochrome c oxidase cbb3-type, subunit III SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 119 189 9.7E-6 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 204 277 3.6E-7 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 SUPERFAMILY SSF46626 60 191 5.13E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 Gene3D G3DSA:1.10.760.10 197 282 2.7E-12 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 Gene3D G3DSA:1.10.760.10 104 196 5.0E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2388 b8b40d4bb9dde77671a175e5848af6c7 282 Gene3D G3DSA:1.20.58.1490 7 102 4.3E-9 T 13-10-2018 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 TIGRFAM TIGR00032 argG: argininosuccinate synthase 7 397 1.5E-142 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 Hamap MF_00005 Argininosuccinate synthase [argG]. 5 404 50.362 T 13-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 Pfam PF00764 Arginosuccinate synthase 9 396 1.3E-151 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 121 132 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 SUPERFAMILY SSF69864 177 404 2.88E-94 T 13-10-2018 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 Gene3D G3DSA:3.40.50.620 7 178 4.1E-154 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 SUPERFAMILY SSF52402 6 211 3.31E-44 T 13-10-2018 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 11 19 - T 13-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 Gene3D G3DSA:1.20.5.470 379 399 1.2E-6 T 13-10-2018 SJPD1_1478 389fbd700774b6dc6e326e636480af90 409 Gene3D G3DSA:3.90.1260.10 68 358 4.1E-154 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_2019 41e3b6e40570436c3a5f703092e56472 275 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 6 206 7.6E-49 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_2019 41e3b6e40570436c3a5f703092e56472 275 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 2 254 12.805 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_2019 41e3b6e40570436c3a5f703092e56472 275 Gene3D G3DSA:3.30.2350.10 2 221 2.2E-58 T 13-10-2018 SJPD1_2019 41e3b6e40570436c3a5f703092e56472 275 SUPERFAMILY SSF55120 3 218 6.24E-59 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_2019 41e3b6e40570436c3a5f703092e56472 275 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 24 171 2.4E-42 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 Gene3D G3DSA:3.10.20.740 1 123 1.2E-36 T 13-10-2018 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 SUPERFAMILY SSF54292 1 123 1.9E-30 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 Gene3D G3DSA:3.30.70.20 126 205 4.8E-7 T 13-10-2018 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 SUPERFAMILY SSF54862 81 210 1.07E-27 T 13-10-2018 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 SMART SM00929 83 123 4.6E-16 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 Gene3D G3DSA:2.20.25.90 218 274 7.5E-6 T 13-10-2018 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 84 122 2.5E-15 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 SUPERFAMILY SSF53706 395 469 4.28E-5 T 13-10-2018 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 75 1.8E-16 T 13-10-2018 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 146 156 - T 13-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0461 66ea79aab1b6ab79ab281d873443e661 504 SUPERFAMILY SSF53706 214 348 1.57E-14 T 13-10-2018 SJPD1_2368 afcecd24d33f694782aaca4e5c5e99a1 179 SUPERFAMILY SSF49777 31 178 3.66E-49 T 13-10-2018 IPR036610 PEBP-like superfamily SJPD1_2368 afcecd24d33f694782aaca4e5c5e99a1 179 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 39 175 7.5E-46 T 13-10-2018 IPR005247 YbhB/YbcL SJPD1_2368 afcecd24d33f694782aaca4e5c5e99a1 179 Pfam PF01161 Phosphatidylethanolamine-binding protein 42 177 4.6E-37 T 13-10-2018 IPR008914 Phosphatidylethanolamine-binding protein SJPD1_2368 afcecd24d33f694782aaca4e5c5e99a1 179 Gene3D G3DSA:3.90.280.10 15 179 1.3E-50 T 13-10-2018 IPR036610 PEBP-like superfamily SJPD1_1268 242da84381c94052f1df69be4e98f729 304 SUPERFAMILY SSF53474 4 300 4.27E-70 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1268 242da84381c94052f1df69be4e98f729 304 PRINTS PR00412 Epoxide hydrolase signature 275 297 9.4E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 SJPD1_1268 242da84381c94052f1df69be4e98f729 304 PRINTS PR00412 Epoxide hydrolase signature 39 57 9.4E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 SJPD1_1268 242da84381c94052f1df69be4e98f729 304 PRINTS PR00412 Epoxide hydrolase signature 107 120 9.4E-10 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 SJPD1_1268 242da84381c94052f1df69be4e98f729 304 Gene3D G3DSA:3.40.50.1820 6 303 8.4E-78 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1268 242da84381c94052f1df69be4e98f729 304 Pfam PF00561 alpha/beta hydrolase fold 34 287 2.1E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2102 2c10880b2c0522ad11161d9678922996 135 Gene3D G3DSA:2.60.120.10 2 135 1.8E-49 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2102 2c10880b2c0522ad11161d9678922996 135 Pfam PF07883 Cupin domain 44 103 2.3E-9 T 13-10-2018 IPR013096 Cupin 2, conserved barrel SJPD1_2102 2c10880b2c0522ad11161d9678922996 135 SUPERFAMILY SSF51182 18 133 1.13E-26 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_2323 fa6d82e9bc91fbe8c7ce4b0f0f127b5b 257 SUPERFAMILY SSF53213 4 255 9.94E-76 T 13-10-2018 SJPD1_2323 fa6d82e9bc91fbe8c7ce4b0f0f127b5b 257 PIRSF PIRSF006157 1 257 1.2E-79 T 13-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 SJPD1_2323 fa6d82e9bc91fbe8c7ce4b0f0f127b5b 257 Gene3D G3DSA:3.40.830.10 1 257 3.7E-78 T 13-10-2018 SJPD1_2323 fa6d82e9bc91fbe8c7ce4b0f0f127b5b 257 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 22 251 2.1E-31 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 2 228 6.9E-56 T 13-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 Gene3D G3DSA:3.40.50.150 50 238 8.3E-56 T 13-10-2018 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 Gene3D G3DSA:3.10.290.10 1 49 7.0E-10 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 SUPERFAMILY SSF53335 55 161 2.33E-17 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 SMART SM00363 1 65 6.0E-14 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 SUPERFAMILY SSF55174 1 56 7.51E-14 T 13-10-2018 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 Pfam PF01728 FtsJ-like methyltransferase 56 183 9.3E-13 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 SJPD1_1732 e6d2e85102fc17e84ee33f97cf1c0c22 238 Pfam PF01479 S4 domain 1 48 7.7E-13 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 Gene3D G3DSA:3.30.70.1450 442 515 4.8E-9 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 SUPERFAMILY SSF81324 38 270 3.48E-39 T 13-10-2018 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 SUPERFAMILY SSF116726 432 512 4.32E-7 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 Gene3D G3DSA:3.40.50.720 288 432 4.3E-29 T 13-10-2018 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 Pfam PF00520 Ion transport protein 41 271 6.0E-22 T 13-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 Gene3D G3DSA:1.10.287.70 68 274 1.8E-39 T 13-10-2018 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 PRINTS PR00169 Potassium channel signature 214 236 6.8E-21 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 PRINTS PR00169 Potassium channel signature 73 96 6.8E-21 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 PRINTS PR00169 Potassium channel signature 184 207 6.8E-21 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 PRINTS PR00169 Potassium channel signature 155 181 6.8E-21 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 PRINTS PR00169 Potassium channel signature 34 62 6.8E-21 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 PRINTS PR00169 Potassium channel signature 243 269 6.8E-21 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 SJPD1_2138 b881190079d09ecd199809792b814bd9 519 SUPERFAMILY SSF51735 288 424 1.34E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2138 b881190079d09ecd199809792b814bd9 519 Pfam PF02254 TrkA-N domain 292 406 4.5E-25 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SJPD1_1634 94fb5acd884bbc8d57eaa18e9522fe29 422 Gene3D G3DSA:3.65.10.10 22 234 3.1E-161 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 SJPD1_1634 94fb5acd884bbc8d57eaa18e9522fe29 422 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 409 9.9E-99 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 SJPD1_1634 94fb5acd884bbc8d57eaa18e9522fe29 422 Gene3D G3DSA:3.65.10.10 7 417 3.1E-161 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 SJPD1_1634 94fb5acd884bbc8d57eaa18e9522fe29 422 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 2 420 42.079 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1634 94fb5acd884bbc8d57eaa18e9522fe29 422 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 419 8.6E-176 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_1634 94fb5acd884bbc8d57eaa18e9522fe29 422 SUPERFAMILY SSF55205 2 421 6.87E-130 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 SJPD1_0580 4b6c96417d51306f11432631a5936047 231 SMART SM00382 26 210 2.6E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0580 4b6c96417d51306f11432631a5936047 231 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0580 4b6c96417d51306f11432631a5936047 231 Gene3D G3DSA:3.40.50.300 1 231 1.4E-53 T 13-10-2018 SJPD1_0580 4b6c96417d51306f11432631a5936047 231 Pfam PF00005 ABC transporter 18 159 1.9E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0580 4b6c96417d51306f11432631a5936047 231 SUPERFAMILY SSF52540 2 223 1.15E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 54 77 - T 13-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 Pfam PF05193 Peptidase M16 inactive domain 187 364 6.3E-35 T 13-10-2018 IPR007863 Peptidase M16, C-terminal SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 SUPERFAMILY SSF63411 19 227 2.83E-59 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 SUPERFAMILY SSF63411 245 429 4.17E-33 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 Gene3D G3DSA:3.30.830.10 241 433 3.8E-49 T 13-10-2018 SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 Gene3D G3DSA:3.30.830.10 16 238 8.9E-81 T 13-10-2018 SJPD1_1448 ffe14e87eabad3f5f7dd0707f6431924 433 Pfam PF00675 Insulinase (Peptidase family M16) 39 148 1.3E-22 T 13-10-2018 IPR011765 Peptidase M16, N-terminal SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 SUPERFAMILY SSF56042 128 264 2.09E-15 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 Gene3D G3DSA:3.90.650.10 131 273 1.6E-21 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 Gene3D G3DSA:3.30.1330.10 3 125 1.0E-30 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 Pfam PF00586 AIR synthase related protein, N-terminal domain 18 122 1.1E-17 T 13-10-2018 IPR016188 PurM-like, N-terminal domain SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 SUPERFAMILY SSF55326 11 122 1.45E-25 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 13 265 2.2E-55 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 SJPD1_1323 3cef6303fd94f07f509de45b69910796 274 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 2 274 21.118 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 SJPD1_2756 ea4ddb4a72ca7e2518b0454319151686 75 Pfam PF09834 Predicted membrane protein (DUF2061) 9 60 2.4E-23 T 13-10-2018 IPR018638 Domain of unknown function DUF2061, membrane SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 129 157 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 SUPERFAMILY SSF51735 2 228 2.29E-69 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 Gene3D G3DSA:3.40.50.720 1 228 1.2E-69 T 13-10-2018 SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 212 4.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 161 4.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 163 180 4.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 4.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 4.0E-40 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 Pfam PF00106 short chain dehydrogenase 2 185 1.7E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 6.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 6.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2610 1852ed6e0cedc75c8ea44f75e500d108 229 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 161 6.7E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 250 7.5E-86 T 13-10-2018 SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 SUPERFAMILY SSF51735 4 254 3.23E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 Gene3D G3DSA:1.10.8.400 201 257 1.1E-18 T 13-10-2018 SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 PIRSF PIRSF000094 1 258 2.0E-114 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 SJPD1_0534 bac6044227fe3a7e5c1ccd52a177a3c0 273 Gene3D G3DSA:3.40.50.720 7 199 8.4E-41 T 13-10-2018 SJPD1_2227 6b8721a60d20ac78d4e852618148ea5f 251 Gene3D G3DSA:3.90.550.10 2 240 4.1E-39 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2227 6b8721a60d20ac78d4e852618148ea5f 251 Pfam PF00535 Glycosyl transferase family 2 12 172 3.3E-20 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2227 6b8721a60d20ac78d4e852618148ea5f 251 SUPERFAMILY SSF53448 11 229 2.91E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2690 2126850cd321e5c32e18cdc570c850f3 147 Gene3D G3DSA:3.40.50.150 1 130 1.3E-42 T 13-10-2018 SJPD1_2690 2126850cd321e5c32e18cdc570c850f3 147 Pfam PF02384 N-6 DNA Methylase 1 144 2.9E-42 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 SJPD1_2690 2126850cd321e5c32e18cdc570c850f3 147 SUPERFAMILY SSF53335 1 146 1.41E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1841 a8e8127a67ac0514f85a53733f2a5ebd 668 Pfam PF00593 TonB dependent receptor 239 666 6.7E-45 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_1841 a8e8127a67ac0514f85a53733f2a5ebd 668 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 651 668 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site SJPD1_1841 a8e8127a67ac0514f85a53733f2a5ebd 668 Pfam PF07715 TonB-dependent Receptor Plug Domain 87 194 1.3E-22 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_1841 a8e8127a67ac0514f85a53733f2a5ebd 668 Gene3D G3DSA:2.40.170.20 202 668 3.8E-82 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_1841 a8e8127a67ac0514f85a53733f2a5ebd 668 Gene3D G3DSA:2.170.130.10 68 199 3.9E-31 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_1841 a8e8127a67ac0514f85a53733f2a5ebd 668 SUPERFAMILY SSF56935 78 668 9.16E-108 T 13-10-2018 SJPD1_2438 5dc14137d0b074c56734529c5ce679d5 192 Gene3D G3DSA:2.40.30.10 120 192 5.5E-10 T 13-10-2018 SJPD1_2438 5dc14137d0b074c56734529c5ce679d5 192 SUPERFAMILY SSF50447 5 189 7.77E-46 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_2438 5dc14137d0b074c56734529c5ce679d5 192 Pfam PF00297 Ribosomal protein L3 96 161 1.8E-8 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2438 5dc14137d0b074c56734529c5ce679d5 192 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 189 6.5E-53 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2733 88b6d0fe7801ec6f09701214218ec682 425 SUPERFAMILY SSF56954 1 419 5.75E-62 T 13-10-2018 SJPD1_2733 88b6d0fe7801ec6f09701214218ec682 425 Pfam PF02321 Outer membrane efflux protein 25 215 1.2E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2733 88b6d0fe7801ec6f09701214218ec682 425 Pfam PF02321 Outer membrane efflux protein 242 419 8.8E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2733 88b6d0fe7801ec6f09701214218ec682 425 Gene3D G3DSA:1.20.1600.10 14 422 3.1E-58 T 13-10-2018 SJPD1_1167 dacb1f56bafe55211591252191277cf5 135 SUPERFAMILY SSF53098 5 129 2.12E-25 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_1167 dacb1f56bafe55211591252191277cf5 135 SMART SM00732 2 98 2.0E-17 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 SJPD1_1167 dacb1f56bafe55211591252191277cf5 135 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 2 131 19.187 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 SJPD1_1167 dacb1f56bafe55211591252191277cf5 135 Gene3D G3DSA:3.30.420.140 2 135 5.7E-26 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 SJPD1_1167 dacb1f56bafe55211591252191277cf5 135 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 128 1.4E-19 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 SJPD1_1167 dacb1f56bafe55211591252191277cf5 135 Pfam PF03652 Holliday junction resolvase 5 128 7.3E-30 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 SJPD1_0559 23ec3be081e19543fdf2fe7751a315f1 250 Pfam PF08378 Nuclease-related domain 22 134 5.1E-28 T 13-10-2018 IPR011528 Nuclease-related domain, NERD SJPD1_0559 23ec3be081e19543fdf2fe7751a315f1 250 Gene3D G3DSA:3.30.65.10 198 248 1.8E-6 T 13-10-2018 SJPD1_0559 23ec3be081e19543fdf2fe7751a315f1 250 SUPERFAMILY SSF57783 205 245 2.55E-6 T 13-10-2018 SJPD1_0559 23ec3be081e19543fdf2fe7751a315f1 250 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 213 247 2.1E-10 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 SJPD1_2481 e4371fb80e164b0f8c7232b04d585094 113 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 2 110 2.1E-23 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR SJPD1_2481 e4371fb80e164b0f8c7232b04d585094 113 Pfam PF03960 ArsC family 36 109 2.7E-10 T 13-10-2018 IPR006660 Arsenate reductase-like SJPD1_2481 e4371fb80e164b0f8c7232b04d585094 113 SUPERFAMILY SSF52833 1 111 3.14E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_2481 e4371fb80e164b0f8c7232b04d585094 113 Gene3D G3DSA:3.40.30.10 1 113 5.2E-28 T 13-10-2018 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 362 1.8E-157 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 Pfam PF00472 RF-1 domain 227 335 1.7E-40 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 Gene3D G3DSA:3.30.160.20 225 318 4.4E-94 T 13-10-2018 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 SUPERFAMILY SSF75620 29 361 1.7E-127 T 13-10-2018 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 Gene3D G3DSA:1.20.58.410 4 115 3.3E-19 T 13-10-2018 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 Gene3D G3DSA:3.30.70.1660 129 356 4.4E-94 T 13-10-2018 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 244 260 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 SMART SM00937 84 194 5.1E-57 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 Pfam PF03462 PCRF domain 31 219 1.1E-57 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 SJPD1_0547 e4eeeab61ce08557e9411765fecc29a5 364 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 2 363 37.987 T 13-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 SJPD1_1954 e431cd112c5506113698686a8da5381f 491 SMART SM00387 387 491 3.5E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1954 e431cd112c5506113698686a8da5381f 491 SUPERFAMILY SSF47384 268 340 1.96E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1954 e431cd112c5506113698686a8da5381f 491 SMART SM00388 282 344 0.0065 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1954 e431cd112c5506113698686a8da5381f 491 Gene3D G3DSA:3.30.565.10 344 490 9.5E-23 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1954 e431cd112c5506113698686a8da5381f 491 Gene3D G3DSA:1.10.287.130 268 343 1.3E-8 T 13-10-2018 SJPD1_1954 e431cd112c5506113698686a8da5381f 491 SUPERFAMILY SSF55874 347 480 1.09E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1954 e431cd112c5506113698686a8da5381f 491 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 389 479 1.1E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 Pfam PF05552 Conserved TM helix 16 57 2.9E-8 T 13-10-2018 IPR008910 Conserved TM helix SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 Pfam PF00924 Mechanosensitive ion channel 67 260 2.7E-40 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 SUPERFAMILY SSF50182 109 172 5.89E-16 T 13-10-2018 IPR010920 LSM domain superfamily SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 SUPERFAMILY SSF82861 23 107 1.12E-14 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 SUPERFAMILY SSF82689 174 271 1.31E-24 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 Gene3D G3DSA:3.30.70.100 175 265 2.4E-21 T 13-10-2018 SJPD1_2183 5d014deaff05222cec5fb989de9438d2 275 Gene3D G3DSA:2.30.30.60 124 172 8.5E-13 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 53 64 5.7E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 5.7E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 534 547 5.7E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 570 579 5.7E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 236 259 5.7E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 Gene3D G3DSA:3.90.740.10 198 408 4.8E-221 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 919 18.95 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 60 71 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 SUPERFAMILY SSF52374 1 657 2.01E-129 T 13-10-2018 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 14 835 1.5E-268 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 SUPERFAMILY SSF50677 207 403 8.63E-42 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 Gene3D G3DSA:3.40.50.620 32 638 4.8E-221 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 Gene3D G3DSA:1.10.730.20 649 920 2.0E-62 T 13-10-2018 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 SUPERFAMILY SSF47323 661 918 3.49E-45 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 650 9.0E-211 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0590 1c70fd1045d074eb96590d2e9bd9286f 920 Pfam PF08264 Anticodon-binding domain of tRNA 691 840 6.9E-18 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 SJPD1_2577 58a2852a57dda580ada5faced1610a25 278 Gene3D G3DSA:1.10.3720.10 15 269 3.7E-62 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2577 58a2852a57dda580ada5faced1610a25 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 269 1.6E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2577 58a2852a57dda580ada5faced1610a25 278 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 14 270 3.7E-125 T 13-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 SJPD1_2577 58a2852a57dda580ada5faced1610a25 278 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 269 3.6E-100 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 SJPD1_2577 58a2852a57dda580ada5faced1610a25 278 SUPERFAMILY SSF161098 10 263 9.81E-56 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 Pfam PF14827 Double sensory domain of two-component sensor kinase 43 281 8.3E-34 T 13-10-2018 IPR029150 Double Cache domain 3 SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 Gene3D G3DSA:1.10.287.950 320 651 9.9E-60 T 13-10-2018 SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 SMART SM00283 382 650 5.4E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 468 580 1.2E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 SMART SM00304 320 374 6.0E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 SUPERFAMILY SSF103190 61 188 2.16E-9 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 SUPERFAMILY SSF58104 342 650 2.35E-57 T 13-10-2018 SJPD1_2267 c7aae1a5f7b70379a9c0452a8d416ed3 651 Pfam PF00672 HAMP domain 321 370 1.5E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 SUPERFAMILY SSF52540 323 568 1.22E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 Gene3D G3DSA:3.40.50.300 317 571 9.0E-91 T 13-10-2018 SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 SUPERFAMILY SSF90123 3 311 4.97E-68 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 Pfam PF00664 ABC transporter transmembrane region 20 284 2.2E-47 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 Pfam PF00005 ABC transporter 348 497 3.7E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 SMART SM00382 357 543 7.3E-17 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1542 9487c4970a0f3e7c05a5df66643c9aa4 574 Gene3D G3DSA:1.20.1560.10 1 316 1.7E-75 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_2592 00426230b27249d066e50348d563e8a2 446 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 4 440 3.4E-158 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 SJPD1_2592 00426230b27249d066e50348d563e8a2 446 Pfam PF03841 L-seryl-tRNA selenium transferase 74 427 4.3E-131 T 13-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 SJPD1_2592 00426230b27249d066e50348d563e8a2 446 Gene3D G3DSA:3.90.1150.110 7 429 9.0E-150 T 13-10-2018 SJPD1_2592 00426230b27249d066e50348d563e8a2 446 SUPERFAMILY SSF53383 69 442 5.81E-37 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2592 00426230b27249d066e50348d563e8a2 446 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 445 172.683 T 13-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 SJPD1_2592 00426230b27249d066e50348d563e8a2 446 Gene3D G3DSA:3.40.640.10 86 348 9.0E-150 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 SUPERFAMILY SSF46689 67 114 3.4E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 Gene3D G3DSA:1.10.10.60 63 118 1.8E-14 T 13-10-2018 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 97 113 1.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 82 97 1.3E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 SMART SM00342 29 113 1.1E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 Gene3D G3DSA:3.20.80.10 131 286 1.0E-31 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 Pfam PF12833 Helix-turn-helix domain 37 114 1.7E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 SMART SM00871 131 285 3.3E-19 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 Gene3D G3DSA:1.10.10.60 4 62 1.7E-11 T 13-10-2018 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 SUPERFAMILY SSF46689 12 63 1.52E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 Pfam PF06445 GyrI-like small molecule binding domain 133 285 1.5E-22 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain SJPD1_2030 f4b30c9c2c9c1c2822ddf9cb8956df44 287 SUPERFAMILY SSF55136 132 285 6.7E-28 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 SUPERFAMILY SSF50486 203 304 1.14E-19 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 299 29.695 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 297 6.0E-74 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 SUPERFAMILY SSF53328 1 205 5.36E-49 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 Gene3D G3DSA:3.40.50.170 1 204 1.6E-61 T 13-10-2018 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 Gene3D G3DSA:3.10.25.10 205 304 7.7E-17 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 Pfam PF00551 Formyl transferase 1 176 6.1E-35 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_0616 ef9a1cdb1c48e75e0665b44c95dc5b1e 305 Pfam PF02911 Formyl transferase, C-terminal domain 202 296 8.4E-19 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_2125 7264046d4070ae362db0f35af6fdb5b7 149 Pfam PF00156 Phosphoribosyl transferase domain 7 146 1.8E-25 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 SJPD1_2125 7264046d4070ae362db0f35af6fdb5b7 149 Gene3D G3DSA:3.40.50.2020 1 148 2.8E-32 T 13-10-2018 SJPD1_2125 7264046d4070ae362db0f35af6fdb5b7 149 SUPERFAMILY SSF53271 3 139 1.7E-25 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 PIRSF PIRSF006004 2 358 8.0E-132 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 Gene3D G3DSA:1.10.150.530 3 59 3.3E-17 T 13-10-2018 SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 Pfam PF04055 Radical SAM superfamily 116 279 2.0E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 3 354 68.455 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 SUPERFAMILY SSF102114 110 313 7.06E-10 T 13-10-2018 SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 2 355 3.8E-133 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 SJPD1_0092 e2ad1698b2f1777fb3ba53a604c3d710 358 Gene3D G3DSA:3.20.20.70 62 338 3.7E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Gene3D G3DSA:1.10.10.60 426 479 9.3E-16 T 13-10-2018 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Gene3D G3DSA:3.30.450.20 53 212 4.4E-23 T 13-10-2018 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 SUPERFAMILY SSF46689 482 534 4.42E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Pfam PF06445 GyrI-like small molecule binding domain 546 669 1.9E-8 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Gene3D G3DSA:3.20.80.10 546 698 3.1E-8 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 SUPERFAMILY SSF55136 546 676 2.35E-8 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Gene3D G3DSA:1.10.10.60 480 533 2.5E-13 T 13-10-2018 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Pfam PF12833 Helix-turn-helix domain 452 530 1.2E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Pfam PF02743 Cache domain 100 222 1.7E-17 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Gene3D G3DSA:3.30.450.20 65 176 4.4E-23 T 13-10-2018 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 Gene3D G3DSA:3.30.450.20 284 410 1.5E-6 T 13-10-2018 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 483 525 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 SMART SM00342 446 529 2.3E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0400 3888ff1b17407548f15ab66809be32b0 700 SUPERFAMILY SSF46689 430 480 1.88E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Gene3D G3DSA:3.40.190.10 407 509 4.1E-22 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 654 817 4.1E-49 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 SMART SM00267 646 819 8.2E-53 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 SUPERFAMILY SSF53850 314 548 1.53E-14 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 324 555 1.5E-28 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 SUPERFAMILY SSF53850 28 255 2.56E-21 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Gene3D G3DSA:3.40.190.10 25 288 4.5E-56 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Pfam PF09084 NMT1/THI5 like 33 237 1.1E-38 T 13-10-2018 IPR015168 SsuA/THI5-like SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Pfam PF00990 Diguanylate cyclase, GGDEF domain 657 815 2.4E-42 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Gene3D G3DSA:3.30.70.270 648 820 1.7E-51 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 SUPERFAMILY SSF55073 662 818 1.41E-43 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Gene3D G3DSA:3.40.190.10 103 202 4.5E-56 T 13-10-2018 SJPD1_2262 10d9dc50ea2cbdfeef2c272ab9015015 821 Gene3D G3DSA:3.40.190.10 324 523 4.1E-22 T 13-10-2018 SJPD1_0801 5701569b22e3a134e010100550549756 556 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 335 549 4.0E-48 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 SJPD1_0801 5701569b22e3a134e010100550549756 556 SUPERFAMILY SSF53187 333 552 1.35E-48 T 13-10-2018 SJPD1_0801 5701569b22e3a134e010100550549756 556 SMART SM00646 394 549 7.5E-41 T 13-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 SJPD1_0801 5701569b22e3a134e010100550549756 556 Gene3D G3DSA:3.40.630.40 321 555 4.5E-70 T 13-10-2018 SJPD1_2008 df081ed7dd848e652f6ec39f1451a279 91 SMART SM01323 6 89 1.7E-42 T 13-10-2018 IPR003849 Preprotein translocase YajC SJPD1_2008 df081ed7dd848e652f6ec39f1451a279 91 PRINTS PR01853 Bacterial YajC preprotein translocase signature 28 46 6.7E-17 T 13-10-2018 IPR003849 Preprotein translocase YajC SJPD1_2008 df081ed7dd848e652f6ec39f1451a279 91 PRINTS PR01853 Bacterial YajC preprotein translocase signature 8 28 6.7E-17 T 13-10-2018 IPR003849 Preprotein translocase YajC SJPD1_2008 df081ed7dd848e652f6ec39f1451a279 91 Pfam PF02699 Preprotein translocase subunit 10 87 1.7E-30 T 13-10-2018 IPR003849 Preprotein translocase YajC SJPD1_2008 df081ed7dd848e652f6ec39f1451a279 91 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 7 89 5.5E-31 T 13-10-2018 IPR003849 Preprotein translocase YajC SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 257 43.266 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 SUPERFAMILY SSF56194 172 257 6.67E-30 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 169 256 2.1E-26 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 Gene3D G3DSA:3.90.78.10 178 257 4.5E-30 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 Gene3D G3DSA:3.30.465.10 61 177 9.4E-15 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 SUPERFAMILY SSF56176 33 173 1.14E-17 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 SJPD1_2813 12865a5136e020713bd18d7725f5df93 257 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 32 256 4.0E-43 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_0689 8f8a581d593b3f48eb0694fec710408c 249 Pfam PF05036 Sporulation related domain 175 246 1.8E-10 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 SJPD1_0689 8f8a581d593b3f48eb0694fec710408c 249 SUPERFAMILY SSF110997 175 246 4.58E-8 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 SJPD1_0689 8f8a581d593b3f48eb0694fec710408c 249 Gene3D G3DSA:3.30.70.1070 164 249 3.4E-5 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 SJPD1_0038 5cfe95601fecf919834699ed693087cb 188 SUPERFAMILY SSF53474 2 183 1.62E-18 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0038 5cfe95601fecf919834699ed693087cb 188 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 182 8.1E-44 T 13-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA SJPD1_0038 5cfe95601fecf919834699ed693087cb 188 Gene3D G3DSA:3.40.50.1820 1 187 9.9E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1141 dc5ace2bf3d5a87e4c5e0a195d2f1f4e 120 Pfam PF00675 Insulinase (Peptidase family M16) 34 114 8.7E-7 T 13-10-2018 IPR011765 Peptidase M16, N-terminal SJPD1_1141 dc5ace2bf3d5a87e4c5e0a195d2f1f4e 120 Gene3D G3DSA:3.30.830.10 27 119 8.5E-11 T 13-10-2018 SJPD1_1141 dc5ace2bf3d5a87e4c5e0a195d2f1f4e 120 SUPERFAMILY SSF63411 31 115 2.43E-11 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SJPD1_1964 c52e036226bbc2a665e67c48ee8b4a42 262 Gene3D G3DSA:3.30.1150.10 96 258 4.6E-11 T 13-10-2018 SJPD1_1964 c52e036226bbc2a665e67c48ee8b4a42 262 SUPERFAMILY SSF74653 158 238 2.35E-9 T 13-10-2018 SJPD1_1964 c52e036226bbc2a665e67c48ee8b4a42 262 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 182 255 1.8E-8 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 SJPD1_1964 c52e036226bbc2a665e67c48ee8b4a42 262 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 184 257 1.9E-11 T 13-10-2018 IPR006260 TonB/TolA, C-terminal SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Gene3D G3DSA:1.10.287.1080 123 215 2.1E-29 T 13-10-2018 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 128 209 1.2E-28 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 31 104 4.2E-36 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 5 108 31.811 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 123 209 18.158 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 SUPERFAMILY SSF141734 5 111 1.57E-48 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Gene3D G3DSA:3.10.20.400 1 95 9.9E-41 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 129 212 6.8E-15 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 7 214 34.678 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 54 107 1.0E-17 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 SJPD1_0211 2a78e469f2078a3c93eee7eb4f37b7c4 227 SUPERFAMILY SSF101386 126 213 2.24E-23 T 13-10-2018 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 Gene3D G3DSA:1.10.287.130 298 400 6.4E-9 T 13-10-2018 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 Gene3D G3DSA:3.30.565.10 405 553 6.9E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 500 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 535 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 553 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 PRINTS PR00344 Bacterial sensor protein C-terminal signature 504 514 4.8E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 447 550 1.3E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 SUPERFAMILY SSF55874 404 553 4.85E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 SMART SM00387 445 553 8.3E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 Pfam PF14827 Double sensory domain of two-component sensor kinase 52 254 3.3E-7 T 13-10-2018 IPR029150 Double Cache domain 3 SJPD1_2298 71c21bcf0cf20747b3018f8d886911f2 553 SUPERFAMILY SSF47384 328 401 4.32E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0422 414ee3ea808136fe6578de9fddef809c 300 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 284 9.4E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 SMART SM01400 4 120 4.9E-79 T 13-10-2018 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 308 1.8E-126 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 SUPERFAMILY SSF53271 69 301 7.32E-67 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 Gene3D G3DSA:3.40.50.2020 7 297 4.4E-130 T 13-10-2018 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 Pfam PF14572 Phosphoribosyl synthetase-associated domain 202 308 1.7E-27 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 128 143 - T 13-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 5 120 8.2E-50 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 309 48.65 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 SJPD1_0357 d7b754cbe9301ecca093efbbe5eff303 309 Gene3D G3DSA:3.40.50.2020 147 285 4.4E-130 T 13-10-2018 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 SUPERFAMILY SSF55008 1 67 5.5E-19 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 PRINTS PR00944 Copper ion binding protein signature 41 53 3.8E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 PRINTS PR00944 Copper ion binding protein signature 3 15 3.8E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 PRINTS PR00944 Copper ion binding protein signature 53 66 3.8E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 PRINTS PR00944 Copper ion binding protein signature 28 41 3.8E-5 T 13-10-2018 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 Pfam PF00403 Heavy-metal-associated domain 7 65 1.3E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 13-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 SJPD1_1788 3851a6e7647d95d49348aef3e1d570e3 68 Gene3D G3DSA:3.30.70.100 1 68 1.9E-18 T 13-10-2018 SJPD1_2492 fcbf618c4016075e6cfc77de74b62ee8 190 SUPERFAMILY SSF50475 2 172 2.4E-26 T 13-10-2018 SJPD1_2492 fcbf618c4016075e6cfc77de74b62ee8 190 Pfam PF01613 Flavin reductase like domain 22 146 2.1E-13 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 SJPD1_2492 fcbf618c4016075e6cfc77de74b62ee8 190 Gene3D G3DSA:2.30.110.10 2 184 6.6E-38 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_2492 fcbf618c4016075e6cfc77de74b62ee8 190 SMART SM00903 21 177 0.009 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 SUPERFAMILY SSF53681 104 216 2.78E-25 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 Gene3D G3DSA:3.40.50.1860 104 216 2.0E-74 T 13-10-2018 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 Gene3D G3DSA:3.40.50.1860 4 224 2.0E-74 T 13-10-2018 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 SUPERFAMILY SSF53681 1 113 2.16E-33 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 225 2.6E-55 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 194 204 - T 13-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 SJPD1_0086 20635a768056b94ef6206cd10b6dfdba 232 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 232 2.4E-58 T 13-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 SJPD1_0280 0fe0d5f1a2b2b7851f9b771e3cd6573a 82 SMART SM01207 1 74 0.0034 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 SJPD1_0280 0fe0d5f1a2b2b7851f9b771e3cd6573a 82 Pfam PF02660 Glycerol-3-phosphate acyltransferase 5 73 5.9E-7 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 PRINTS PR00111 Alpha/beta hydrolase fold signature 128 141 5.2E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 PRINTS PR00111 Alpha/beta hydrolase fold signature 241 255 5.2E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 PRINTS PR00111 Alpha/beta hydrolase fold signature 70 85 5.2E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 5.2E-16 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 SUPERFAMILY SSF53474 31 295 6.76E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 Pfam PF00561 alpha/beta hydrolase fold 44 281 7.8E-30 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2616 010de8d2e5d7738f385af624f7dbd680 440 Gene3D G3DSA:3.40.50.1820 19 301 1.1E-51 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 SUPERFAMILY SSF55874 192 335 6.42E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 Gene3D G3DSA:3.30.565.10 189 338 2.2E-25 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 PRINTS PR00344 Bacterial sensor protein C-terminal signature 276 290 3.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 PRINTS PR00344 Bacterial sensor protein C-terminal signature 303 321 3.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 PRINTS PR00344 Bacterial sensor protein C-terminal signature 292 302 3.4E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 SUPERFAMILY SSF47384 124 191 9.22E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 191 7.9E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 240 334 6.4E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 SMART SM00388 131 195 3.0E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 Gene3D G3DSA:1.10.287.130 121 188 1.5E-11 T 13-10-2018 SJPD1_0781 ea569dc2104b51b0a0b5822a66f280f9 338 SMART SM00387 235 338 2.6E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0427 d0ceb00e81bf43c04e462faf889cf573 247 Pfam PF03883 Peroxide stress protein YaaA 1 230 1.4E-39 T 13-10-2018 IPR005583 Peroxide stress protein YaaA SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 101 414 4.3E-48 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 43 6.3E-6 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 Pfam PF00145 C-5 cytosine-specific DNA methylase 91 416 6.4E-54 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 SUPERFAMILY SSF53335 3 415 1.67E-74 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 ProSitePatterns PS00095 C-5 cytosine-specific DNA methylases C-terminal signature. 396 414 - T 13-10-2018 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site KEGG: 00270+2.1.1.37 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 ProSitePatterns PS00094 C-5 cytosine-specific DNA methylases active site. 111 123 - T 13-10-2018 IPR018117 DNA methylase, C-5 cytosine-specific, active site KEGG: 00270+2.1.1.37|Reactome: R-HSA-212300|Reactome: R-HSA-4655427|Reactome: R-HSA-5334118 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 154 168 1.3E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 2 18 1.3E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0048 8403b2a1fb096e5c438a584376df57d2 421 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 201 214 1.3E-15 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 SJPD1_0670 eec59af7699f81435e23329c9dc6ffef 397 Gene3D G3DSA:1.20.1740.10 1 397 2.5E-44 T 13-10-2018 SJPD1_0670 eec59af7699f81435e23329c9dc6ffef 397 Pfam PF00324 Amino acid permease 1 396 4.1E-95 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 SJPD1_0670 eec59af7699f81435e23329c9dc6ffef 397 PIRSF PIRSF006060 1 396 1.6E-59 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 Pfam PF13847 Methyltransferase domain 499 643 3.0E-26 T 13-10-2018 IPR025714 Methyltransferase domain SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 Pfam PF13394 4Fe-4S single cluster domain 77 156 1.4E-6 T 13-10-2018 SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 SUPERFAMILY SSF53335 471 660 1.04E-31 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 SUPERFAMILY SSF102114 73 346 9.16E-43 T 13-10-2018 SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 Pfam PF04055 Radical SAM superfamily 76 226 7.9E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 Gene3D G3DSA:3.20.20.70 63 352 2.6E-40 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0859 336e686df9dc5228ffd4df421f1d5b60 996 Gene3D G3DSA:3.40.50.150 467 681 8.3E-51 T 13-10-2018 SJPD1_2736 e4b0a2a4ba49b9bcfb39b292d42382cc 233 Pfam PF00005 ABC transporter 29 179 2.5E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2736 e4b0a2a4ba49b9bcfb39b292d42382cc 233 Gene3D G3DSA:3.40.50.300 6 233 6.3E-62 T 13-10-2018 SJPD1_2736 e4b0a2a4ba49b9bcfb39b292d42382cc 233 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2736 e4b0a2a4ba49b9bcfb39b292d42382cc 233 SMART SM00382 37 227 3.7E-19 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2736 e4b0a2a4ba49b9bcfb39b292d42382cc 233 SUPERFAMILY SSF52540 8 231 1.4E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 Pfam PF13247 4Fe-4S dicluster domain 55 167 2.8E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 Gene3D G3DSA:3.30.70.20 8 177 2.2E-35 T 13-10-2018 SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 Gene3D G3DSA:3.30.70.20 64 121 2.2E-35 T 13-10-2018 SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 PRINTS PR00354 7Fe ferredoxin signature 58 68 9.2E-6 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 PRINTS PR00354 7Fe ferredoxin signature 85 102 9.2E-6 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 PRINTS PR00354 7Fe ferredoxin signature 68 78 9.2E-6 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 90 101 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2557 fa8e13e944ba1a69e7a78719168a2c58 200 SUPERFAMILY SSF54862 4 183 3.77E-49 T 13-10-2018 SJPD1_0266 735bc2d0d82c4a453ee6403bf3ac55e7 330 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 186 1.3E-30 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 SJPD1_0266 735bc2d0d82c4a453ee6403bf3ac55e7 330 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 327 69.142 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 SJPD1_0266 735bc2d0d82c4a453ee6403bf3ac55e7 330 Gene3D G3DSA:3.40.47.10 1 330 2.7E-129 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_0266 735bc2d0d82c4a453ee6403bf3ac55e7 330 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 238 326 4.4E-34 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 SJPD1_0266 735bc2d0d82c4a453ee6403bf3ac55e7 330 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 2 327 5.6E-137 T 13-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 SJPD1_0266 735bc2d0d82c4a453ee6403bf3ac55e7 330 SUPERFAMILY SSF53901 7 327 4.24E-64 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_0459 8af6a90edb5586452c6a67fe7be6f1fd 168 Gene3D G3DSA:3.30.450.20 3 115 2.5E-21 T 13-10-2018 SJPD1_0459 8af6a90edb5586452c6a67fe7be6f1fd 168 SUPERFAMILY SSF55785 19 111 2.74E-24 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0459 8af6a90edb5586452c6a67fe7be6f1fd 168 Pfam PF08447 PAS fold 29 111 1.3E-12 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0459 8af6a90edb5586452c6a67fe7be6f1fd 168 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 106 9.8E-12 T 13-10-2018 IPR000014 PAS domain SJPD1_1602 d7f7d824c157ef1458bbc0239979dcea 265 Gene3D G3DSA:3.40.50.300 10 263 1.1E-60 T 13-10-2018 SJPD1_1602 d7f7d824c157ef1458bbc0239979dcea 265 SUPERFAMILY SSF52540 17 229 2.07E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1602 d7f7d824c157ef1458bbc0239979dcea 265 Pfam PF00005 ABC transporter 32 176 8.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1602 d7f7d824c157ef1458bbc0239979dcea 265 SMART SM00382 41 230 2.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1602 d7f7d824c157ef1458bbc0239979dcea 265 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 Gene3D G3DSA:2.40.40.20 838 968 1.4E-14 T 13-10-2018 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 SUPERFAMILY SSF50692 875 1007 9.95E-15 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 Gene3D G3DSA:3.40.50.740 580 687 5.8E-10 T 13-10-2018 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 Gene3D G3DSA:3.40.228.10 252 563 6.5E-42 T 13-10-2018 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 SMART SM00926 67 151 1.6E-7 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 SUPERFAMILY SSF53706 66 835 1.69E-102 T 13-10-2018 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 Pfam PF01568 Molydopterin dinucleotide binding domain 876 962 2.0E-8 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_2295 0127ea5353afa0c8bcfc103982f9bd2b 1007 Pfam PF00384 Molybdopterin oxidoreductase 213 672 4.2E-13 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2135 ee318d0c3002b7c281162aae8a855e4e 438 Pfam PF17129 C-terminal domain of metallo-carboxypeptidase 336 430 4.5E-21 T 13-10-2018 IPR033397 Metallo-carboxypeptidase, C-terminal domain SJPD1_2135 ee318d0c3002b7c281162aae8a855e4e 438 Pfam PF17033 Carboxypeptidase controlling helical cell shape catalytic 7 265 1.7E-70 T 13-10-2018 IPR031489 D,L-carboxypeptidase, peptidase domain SJPD1_2135 ee318d0c3002b7c281162aae8a855e4e 438 SUPERFAMILY SSF53187 29 251 1.76E-27 T 13-10-2018 SJPD1_2135 ee318d0c3002b7c281162aae8a855e4e 438 Gene3D G3DSA:3.40.630.10 10 249 2.4E-33 T 13-10-2018 SJPD1_2353 0c621e3a9685f5cddb1f0eaed3b536e8 230 Pfam PF00581 Rhodanese-like domain 117 219 8.5E-11 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2353 0c621e3a9685f5cddb1f0eaed3b536e8 230 Gene3D G3DSA:3.40.250.10 100 225 4.4E-15 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2353 0c621e3a9685f5cddb1f0eaed3b536e8 230 SMART SM00450 98 224 2.2E-6 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2353 0c621e3a9685f5cddb1f0eaed3b536e8 230 SUPERFAMILY SSF52821 109 227 1.96E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 329 411 3.6E-28 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 45 216 1.1E-43 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 Gene3D G3DSA:3.10.20.600 229 324 5.6E-37 T 13-10-2018 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 SUPERFAMILY SSF142984 239 322 5.23E-24 T 13-10-2018 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 Gene3D G3DSA:1.20.1440.230 325 414 2.1E-28 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 SUPERFAMILY SSF140490 323 413 1.57E-30 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 SUPERFAMILY SSF142019 5 237 1.27E-71 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 340 351 - T 13-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 SMART SM00928 327 372 2.5E-23 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 Pfam PF10531 SLBB domain 241 289 3.9E-12 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0474 4eefd6946a1973a42fc75e25aa0150fc 414 Gene3D G3DSA:3.40.50.11540 50 227 4.9E-68 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 Pfam PF04055 Radical SAM superfamily 15 175 3.8E-26 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 17 28 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 2 322 36.645 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 SUPERFAMILY SSF102114 2 273 4.05E-67 T 13-10-2018 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 Gene3D G3DSA:3.20.20.70 1 322 2.2E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 SMART SM00729 11 212 5.5E-10 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 Pfam PF13353 4Fe-4S single cluster domain 18 121 2.8E-8 T 13-10-2018 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 2 322 1.2E-107 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0192 51fa62c1758268efbdaa73e5b91b6516 322 Pfam PF06463 Molybdenum Cofactor Synthesis C 182 303 4.9E-27 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 Pfam PF00361 Proton-conducting membrane transporter 143 354 1.4E-61 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 73 127 5.0E-19 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 116 136 7.3E-52 T 13-10-2018 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 163 184 7.3E-52 T 13-10-2018 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 252 278 7.3E-52 T 13-10-2018 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 88 113 7.3E-52 T 13-10-2018 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 230 251 7.3E-52 T 13-10-2018 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 320 332 7.3E-52 T 13-10-2018 SJPD1_0466 226ee7325a434cf000511f65f8721f87 372 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 4 353 6.6E-129 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 Gene3D G3DSA:3.20.20.70 3 358 4.6E-139 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 16 357 3.6E-108 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 PIRSF PIRSF001359 15 358 3.8E-91 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 Pfam PF01116 Fructose-bisphosphate aldolase class-II 19 356 5.1E-88 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 171 182 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 SUPERFAMILY SSF51569 6 357 7.91E-127 T 13-10-2018 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 6 357 4.5E-166 T 13-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 SJPD1_1700 6080a329bd8d0973e16c6249482b5daf 358 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 99 111 - T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 Gene3D G3DSA:3.40.50.300 213 390 1.4E-47 T 13-10-2018 SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 Gene3D G3DSA:3.40.50.300 1 210 2.7E-76 T 13-10-2018 SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 SMART SM00490 258 339 6.5E-30 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 SUPERFAMILY SSF52540 23 102 1.96E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 Pfam PF00271 Helicase conserved C-terminal domain 232 339 6.6E-28 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 SUPERFAMILY SSF52540 76 359 1.73E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 Pfam PF00270 DEAD/DEAH box helicase 25 196 2.7E-49 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 13-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site SJPD1_2311 3d2cdfefa1ed65f71daa11e154bb41e2 415 SMART SM00487 20 222 4.6E-60 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_2306 c07ebfb7a51126023b205b52de5d5ba6 263 SUPERFAMILY SSF53850 31 252 1.94E-22 T 13-10-2018 SJPD1_2306 c07ebfb7a51126023b205b52de5d5ba6 263 Gene3D G3DSA:3.40.190.10 111 211 1.0E-17 T 13-10-2018 SJPD1_2306 c07ebfb7a51126023b205b52de5d5ba6 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 32 237 9.8E-15 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_2306 c07ebfb7a51126023b205b52de5d5ba6 263 Gene3D G3DSA:3.40.190.10 33 242 1.0E-17 T 13-10-2018 SJPD1_0500 62dfe750e9d39faab9cb0fefbfc73d61 134 SUPERFAMILY SSF54427 27 131 3.24E-32 T 13-10-2018 IPR032710 NTF2-like domain superfamily SJPD1_0500 62dfe750e9d39faab9cb0fefbfc73d61 134 Gene3D G3DSA:3.10.450.50 6 132 2.8E-37 T 13-10-2018 SJPD1_0500 62dfe750e9d39faab9cb0fefbfc73d61 134 Pfam PF02810 SEC-C motif 6 20 4.9E-6 T 13-10-2018 IPR004027 SEC-C motif SJPD1_0042 7e4c145bc502fb65b4ad5d8ecc995fe9 365 SUPERFAMILY SSF56349 83 359 4.41E-46 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_0042 7e4c145bc502fb65b4ad5d8ecc995fe9 365 Pfam PF00589 Phage integrase family 190 352 1.8E-22 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_0042 7e4c145bc502fb65b4ad5d8ecc995fe9 365 Gene3D G3DSA:1.10.150.130 79 189 1.4E-11 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_0042 7e4c145bc502fb65b4ad5d8ecc995fe9 365 Gene3D G3DSA:1.10.443.10 190 362 1.9E-31 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_1321 95bebea304f3943b3beed027a3dbc02d 281 Gene3D G3DSA:3.40.50.11810 135 281 1.1E-13 T 13-10-2018 SJPD1_1321 95bebea304f3943b3beed027a3dbc02d 281 Gene3D G3DSA:3.40.50.11800 1 129 1.1E-10 T 13-10-2018 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 SUPERFAMILY SSF103190 85 183 4.97E-16 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 SUPERFAMILY SSF58104 317 625 3.4E-57 T 13-10-2018 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 Gene3D G3DSA:1.10.287.950 295 626 9.2E-59 T 13-10-2018 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 SMART SM00283 357 625 3.0E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 Gene3D G3DSA:3.30.450.20 49 269 6.0E-48 T 13-10-2018 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 Gene3D G3DSA:3.30.450.20 62 172 6.0E-48 T 13-10-2018 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 Pfam PF02743 Cache domain 41 257 5.9E-28 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 442 590 2.8E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1104 48327e7745e9db45dfbaf35ba6885c84 626 SMART SM00304 295 349 1.4E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1843 4731ea0070f8457d73731a5871fcda13 221 Gene3D G3DSA:3.30.70.1450 137 214 5.1E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_1843 4731ea0070f8457d73731a5871fcda13 221 SUPERFAMILY SSF116726 134 214 8.76E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_1843 4731ea0070f8457d73731a5871fcda13 221 Pfam PF02254 TrkA-N domain 4 119 8.6E-22 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SJPD1_1843 4731ea0070f8457d73731a5871fcda13 221 SUPERFAMILY SSF51735 3 131 4.37E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1843 4731ea0070f8457d73731a5871fcda13 221 Gene3D G3DSA:3.40.50.720 1 136 5.5E-31 T 13-10-2018 SJPD1_2334 e200be14861bfcb75b2e797d9dad1577 97 Gene3D G3DSA:3.30.460.10 1 97 1.3E-21 T 13-10-2018 SJPD1_2334 e200be14861bfcb75b2e797d9dad1577 97 Pfam PF01909 Nucleotidyltransferase domain 10 92 7.0E-11 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 SJPD1_2334 e200be14861bfcb75b2e797d9dad1577 97 SUPERFAMILY SSF81301 9 95 7.71E-15 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 SUPERFAMILY SSF56003 311 905 1.96E-144 T 13-10-2018 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily GO:0016491|GO:0055114 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 324 845 2.5E-133 T 13-10-2018 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:3.30.365.10 364 456 2.7E-73 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:3.30.365.10 615 902 1.7E-92 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 SMART SM01008 190 307 3.2E-33 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 SUPERFAMILY SSF47741 86 191 2.88E-34 T 13-10-2018 IPR036884 [2Fe-2S]-binding domain superfamily SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:3.10.20.30 1 74 9.4E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:3.30.365.10 351 573 2.7E-73 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 206 307 2.2E-20 T 13-10-2018 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:3.90.1170.50 208 307 9.8E-32 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Pfam PF01799 [2Fe-2S] binding domain 75 149 1.6E-26 T 13-10-2018 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 13-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 SUPERFAMILY SSF54292 7 89 8.91E-20 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 63 4.1E-7 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:1.10.150.120 75 193 1.2E-35 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 Gene3D G3DSA:3.30.365.10 627 750 1.7E-92 T 13-10-2018 SJPD1_1855 60e7ca5301c8227c1f12d534ef459732 907 SUPERFAMILY SSF54665 166 329 7.98E-38 T 13-10-2018 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily SJPD1_2544 274111d0c08be5b66511159721fb0794 196 Pfam PF02635 DsrE/DsrF-like family 129 172 2.5E-5 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein SJPD1_2544 274111d0c08be5b66511159721fb0794 196 SUPERFAMILY SSF75169 93 177 1.96E-10 T 13-10-2018 IPR027396 DsrEFH-like SJPD1_2544 274111d0c08be5b66511159721fb0794 196 Pfam PF01206 Sulfurtransferase TusA 2 68 8.4E-17 T 13-10-2018 IPR001455 TusA-like domain SJPD1_2544 274111d0c08be5b66511159721fb0794 196 Gene3D G3DSA:3.30.110.40 1 85 1.8E-20 T 13-10-2018 IPR036868 TusA-like domain superfamily SJPD1_2544 274111d0c08be5b66511159721fb0794 196 SUPERFAMILY SSF64307 2 70 4.32E-16 T 13-10-2018 IPR036868 TusA-like domain superfamily SJPD1_2544 274111d0c08be5b66511159721fb0794 196 TIGRFAM TIGR03527 selenium_YedF: selenium metabolism protein YedF 3 195 1.1E-58 T 13-10-2018 IPR019870 Selenium metabolism protein YedF SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 Pfam PF07690 Major Facilitator Superfamily 24 416 4.0E-52 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 495 4.5E-134 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 Gene3D G3DSA:1.20.1250.20 266 503 1.2E-12 T 13-10-2018 SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 SUPERFAMILY SSF103473 8 503 2.35E-65 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 Gene3D G3DSA:1.20.1720.10 19 225 3.9E-43 T 13-10-2018 SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 PRINTS PR01036 Tetracycline resistance protein TetB signature 113 133 1.1E-6 T 13-10-2018 SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 PRINTS PR01036 Tetracycline resistance protein TetB signature 22 46 1.1E-6 T 13-10-2018 SJPD1_1820 ada3a69fae1c242f7e91b8e9520b8623 506 PRINTS PR01036 Tetracycline resistance protein TetB signature 143 167 1.1E-6 T 13-10-2018 SJPD1_0325 54f15937af134692e15046ee409668e3 239 Pfam PF01209 ubiE/COQ5 methyltransferase family 5 233 4.6E-42 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 SJPD1_0325 54f15937af134692e15046ee409668e3 239 Gene3D G3DSA:3.40.50.150 17 239 2.1E-47 T 13-10-2018 SJPD1_0325 54f15937af134692e15046ee409668e3 239 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 22 37 - T 13-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 SJPD1_0325 54f15937af134692e15046ee409668e3 239 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 2 238 29.608 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 SJPD1_0325 54f15937af134692e15046ee409668e3 239 SUPERFAMILY SSF53335 9 233 1.08E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0325 54f15937af134692e15046ee409668e3 239 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 11 238 2.0E-66 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 TIGRFAM TIGR04282 glyco_like_cofC: transferase 1, rSAM/selenodomain-associated 6 191 5.5E-50 T 13-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 SUPERFAMILY SSF53448 11 194 1.27E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 TIGRFAM TIGR04283 glyco_like_mftF: transferase 2, rSAM/selenodomain-associated 217 436 8.6E-72 T 13-10-2018 IPR026461 Transferase 2, rSAM/selenodomain-associated SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 Pfam PF09837 Uncharacterized protein conserved in bacteria (DUF2064) 50 160 8.2E-27 T 13-10-2018 IPR018641 Transferase 1, rSAM/selenodomain-associated SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 Gene3D G3DSA:3.90.550.10 1 210 5.3E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 Pfam PF00535 Glycosyl transferase family 2 218 344 1.1E-17 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 Gene3D G3DSA:3.90.550.10 211 407 2.2E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0853 d0dde4b1276204df58ec8e3280b94424 441 SUPERFAMILY SSF53448 213 402 1.09E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 Gene3D G3DSA:1.25.40.10 343 515 5.7E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 SMART SM00028 408 441 5.7E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 SUPERFAMILY SSF53300 85 279 1.4E-20 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 SMART SM00327 82 281 4.6E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 Gene3D G3DSA:3.40.50.410 82 280 7.6E-33 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 Pfam PF13519 von Willebrand factor type A domain 86 192 1.6E-12 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 355 434 6.8E-8 T 13-10-2018 SJPD1_0271 ff6d071f51bbf40d32a5590cd005f362 532 SUPERFAMILY SSF48452 346 454 2.68E-12 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1118 a631b4fc094d53a189909b29246d611a 351 PIRSF PIRSF005508 1 351 1.0E-129 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 SJPD1_1118 a631b4fc094d53a189909b29246d611a 351 Pfam PF01758 Sodium Bile acid symporter family 57 254 3.6E-45 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 SJPD1_1118 a631b4fc094d53a189909b29246d611a 351 Gene3D G3DSA:1.20.1530.20 9 342 5.4E-25 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_1118 a631b4fc094d53a189909b29246d611a 351 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 12 342 4.1E-115 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 SJPD1_1833 07e3809d47e697cb9a3fb39b7be062cf 307 Gene3D G3DSA:2.40.10.240 35 137 2.1E-91 T 13-10-2018 SJPD1_1833 07e3809d47e697cb9a3fb39b7be062cf 307 Gene3D G3DSA:3.40.1780.10 1 306 2.1E-91 T 13-10-2018 SJPD1_1833 07e3809d47e697cb9a3fb39b7be062cf 307 SUPERFAMILY SSF111337 1 307 2.62E-101 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 SJPD1_1833 07e3809d47e697cb9a3fb39b7be062cf 307 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 307 6.5E-110 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 SJPD1_1833 07e3809d47e697cb9a3fb39b7be062cf 307 Pfam PF02547 Queuosine biosynthesis protein 1 306 2.7E-97 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 SUPERFAMILY SSF53795 213 524 1.76E-134 T 13-10-2018 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 PIRSF PIRSF006294 1 525 4.9E-238 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 5 525 1.9E-235 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 11 525 55.319 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 Gene3D G3DSA:3.90.228.20 219 511 9.1E-219 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 SUPERFAMILY SSF68923 5 211 2.27E-79 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 Gene3D G3DSA:3.40.449.10 18 218 9.1E-219 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 Gene3D G3DSA:2.170.8.10 37 333 9.1E-219 T 13-10-2018 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 Pfam PF01293 Phosphoenolpyruvate carboxykinase 17 479 2.3E-219 T 13-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 SJPD1_0723 452f015282eff0792c5ef8cc6f2a47e4 525 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 249 264 - T 13-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 150 285 7.0E-45 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 SUPERFAMILY SSF48179 149 293 4.76E-46 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 1 291 30.126 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 33 129 7.7E-17 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 158 179 - T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 Gene3D G3DSA:1.10.1040.10 154 294 4.0E-43 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 Gene3D G3DSA:3.40.50.720 31 153 1.2E-26 T 13-10-2018 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 PIRSF PIRSF000114 28 295 4.0E-70 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 PIRSF PIRSF000114 1 40 0.059 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 SJPD1_1382 5b58c480a00e6e38d96628ff0133ed69 295 SUPERFAMILY SSF51735 2 144 1.42E-22 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 Gene3D G3DSA:3.40.50.2300 7 152 1.8E-32 T 13-10-2018 SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 Pfam PF13426 PAS domain 184 284 1.9E-13 T 13-10-2018 IPR000014 PAS domain SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 SMART SM00091 169 237 4.9E-7 T 13-10-2018 IPR000014 PAS domain SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 173 291 1.7E-12 T 13-10-2018 IPR000014 PAS domain SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 SMART SM00448 15 126 2.6E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 SUPERFAMILY SSF55785 183 281 1.92E-22 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 Pfam PF00072 Response regulator receiver domain 17 124 5.9E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 SUPERFAMILY SSF52172 14 164 1.99E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1185 cb6103db0e1ce90f16e8934c79ae5ee0 429 Gene3D G3DSA:3.30.450.20 167 312 3.1E-28 T 13-10-2018 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 Gene3D G3DSA:3.30.565.10 232 385 8.2E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 SUPERFAMILY SSF55874 237 378 2.49E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 Gene3D G3DSA:1.10.287.130 167 227 7.8E-6 T 13-10-2018 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 SMART SM00388 172 233 0.0014 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 SMART SM00387 276 382 2.7E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 SUPERFAMILY SSF47384 160 229 1.16E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 380 1.0E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 339 2.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 360 2.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 379 2.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0299 21d31ab9f096c31baf1b900d1d30c895 391 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 327 2.0E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0401 c747c81b918cd7705d75651ec0ddec6e 520 TIGRFAM TIGR01813 flavo_cyto_c: flavocytochrome c 45 507 2.1E-125 T 13-10-2018 IPR010960 Flavocytochrome c GO:0000104|GO:0055114 SJPD1_0401 c747c81b918cd7705d75651ec0ddec6e 520 Gene3D G3DSA:3.90.700.10 293 452 8.6E-116 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0401 c747c81b918cd7705d75651ec0ddec6e 520 Pfam PF00890 FAD binding domain 45 496 2.3E-69 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0401 c747c81b918cd7705d75651ec0ddec6e 520 SUPERFAMILY SSF51905 37 514 2.77E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0401 c747c81b918cd7705d75651ec0ddec6e 520 Gene3D G3DSA:3.50.50.60 44 507 8.6E-116 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0401 c747c81b918cd7705d75651ec0ddec6e 520 SUPERFAMILY SSF56425 314 456 2.39E-25 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 11 34 4.9E-25 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 50 74 4.9E-25 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 176 198 4.9E-25 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 126 145 4.9E-25 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 207 220 4.9E-25 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 ProSitePatterns PS00882 Nickel-dependent hydrogenases b-type cytochrome subunit signature 1. 14 31 - T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 TIGRFAM TIGR02125 CytB-hydogenase: Ni/Fe-hydrogenase, b-type cytochrome subunit 8 220 1.4E-72 T 13-10-2018 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 SUPERFAMILY SSF81342 8 225 5.57E-34 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 Pfam PF01292 Prokaryotic cytochrome b561 9 215 1.6E-28 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 SJPD1_1405 676331ffc9c0ffd61f5e42074e24cfd9 225 Gene3D G3DSA:1.20.950.20 2 205 2.7E-52 T 13-10-2018 SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 SUPERFAMILY SSF52540 323 545 1.09E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 SUPERFAMILY SSF52540 3 222 4.42E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 SMART SM00382 349 539 7.2E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 SMART SM00382 30 280 2.5E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 Gene3D G3DSA:3.40.50.300 312 562 7.4E-64 T 13-10-2018 SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 Gene3D G3DSA:3.40.50.300 2 244 1.5E-55 T 13-10-2018 SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 Pfam PF00005 ABC transporter 21 161 2.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1824 ab68386c445a96a967aa6d7839ba0fc4 568 Pfam PF00005 ABC transporter 341 484 1.1E-25 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 5 222 4.1E-68 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 Pfam PF00902 Sec-independent protein translocase protein (TatC) 8 217 1.9E-68 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 3 234 16.875 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 4 31 2.1E-40 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 99 125 2.1E-40 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 150 178 2.1E-40 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_1832 5ef780da2fcbde7fbb89529684e8f281 253 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 81 99 2.1E-40 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 SJPD1_0143 501b48e038ff46bce21cce4d906528ed 394 SUPERFAMILY SSF103473 11 389 1.57E-27 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_0143 501b48e038ff46bce21cce4d906528ed 394 Gene3D G3DSA:1.20.1250.20 9 388 3.6E-23 T 13-10-2018 SJPD1_0143 501b48e038ff46bce21cce4d906528ed 394 Pfam PF07690 Major Facilitator Superfamily 21 353 1.6E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 PIRSF PIRSF002144 1 93 1.1E-31 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 Gene3D G3DSA:3.30.860.10 1 91 1.1E-37 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.127 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 3.5E-21 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 3.5E-21 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 3.5E-21 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 89 6.3E-44 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 Pfam PF00203 Ribosomal protein S19 3 83 1.2E-34 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2434 da1a53e71f1906e9d214ad435dd10040 93 SUPERFAMILY SSF54570 3 84 3.79E-34 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 SMART SM00859 5 122 5.0E-44 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 PIRSF PIRSF000148 3 341 1.6E-124 T 13-10-2018 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 234 248 - T 13-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 142 322 1.1E-60 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 SUPERFAMILY SSF51735 4 160 1.74E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 Gene3D G3DSA:3.30.360.10 131 320 1.6E-132 T 13-10-2018 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 121 7.7E-33 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 SUPERFAMILY SSF55347 132 324 1.36E-76 T 13-10-2018 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 5 338 1.8E-137 T 13-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 Gene3D G3DSA:3.40.50.720 6 334 1.6E-132 T 13-10-2018 SJPD1_0367 b40da42326a9bf6fc695199d1a014e02 342 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 3 337 38.342 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 227 1.1E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 Pfam PF00072 Response regulator receiver domain 13 122 2.1E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 Gene3D G3DSA:1.10.10.10 139 229 1.2E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 SUPERFAMILY SSF46894 156 227 3.06E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 SUPERFAMILY SSF52172 10 172 3.84E-35 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 Gene3D G3DSA:3.40.50.2300 9 129 1.7E-33 T 13-10-2018 SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 SMART SM00448 11 122 3.4E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2299 af28a118c9984cbf5b42af1d6e973874 230 SMART SM00862 157 227 4.2E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Pfam PF00140 Sigma-70 factor, region 1.2 105 136 2.1E-12 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 SUPERFAMILY SSF88659 456 529 4.19E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 SUPERFAMILY SSF88659 514 615 7.85E-26 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Pfam PF04542 Sigma-70 region 2 385 452 4.4E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 577 603 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Gene3D G3DSA:1.10.10.10 533 618 2.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 5 617 35.762 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Gene3D G3DSA:1.10.10.10 456 532 2.7E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Pfam PF04539 Sigma-70 region 3 462 537 8.6E-22 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 407 420 - T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 382 605 4.1E-40 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 Pfam PF04545 Sigma-70, region 4 551 605 9.1E-20 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 PRINTS PR00046 Major sigma-70 factor signature 577 592 2.2E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 PRINTS PR00046 Major sigma-70 factor signature 592 603 2.2E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 PRINTS PR00046 Major sigma-70 factor signature 407 420 2.2E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 PRINTS PR00046 Major sigma-70 factor signature 555 567 2.2E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 PRINTS PR00046 Major sigma-70 factor signature 431 439 2.2E-29 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 SUPERFAMILY SSF88946 121 450 1.51E-62 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 SJPD1_1940 c069025b7c81faf3fc9029165649d436 618 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 380 616 1.4E-114 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 7 157 4.2E-37 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 Gene3D G3DSA:3.30.460.30 2 159 3.3E-45 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 Gene3D G3DSA:3.40.50.720 163 307 1.9E-36 T 13-10-2018 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 SUPERFAMILY SSF69742 1 159 3.53E-39 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 100 123 - T 13-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 PIRSF PIRSF000445 1 427 1.5E-125 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 173 301 1.3E-34 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase SJPD1_1687 21529899323d85763f4ae86946fdd694 433 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 316 413 6.3E-21 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 411 25.847 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 413 1.6E-122 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 SUPERFAMILY SSF69075 313 414 1.96E-15 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 SJPD1_1687 21529899323d85763f4ae86946fdd694 433 SUPERFAMILY SSF51735 164 309 1.91E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 218 2.1E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 SMART SM00448 1 113 1.1E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 SMART SM00862 146 218 1.3E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 Pfam PF00072 Response regulator receiver domain 3 114 1.1E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 Gene3D G3DSA:1.10.10.10 128 220 6.2E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 Gene3D G3DSA:3.40.50.2300 1 127 3.9E-35 T 13-10-2018 SJPD1_0218 2ae417722294ce802d333a4c2051c571 220 SUPERFAMILY SSF52172 1 180 1.57E-41 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 SUPERFAMILY SSF50891 6 171 3.36E-67 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 Gene3D G3DSA:2.40.100.10 14 172 2.9E-72 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 2.1E-33 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 2.1E-33 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 2.1E-33 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 34 49 2.1E-33 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 2.1E-33 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 169 8.1E-55 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 SJPD1_0150 5955486ddfd9dbe4bd1fa1db62a7ab3c 172 PIRSF PIRSF001467 10 171 3.0E-64 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 SJPD1_1404 3a7a05a8078e7db097292f25afd2bb8d 582 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 552 561 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 SJPD1_1404 3a7a05a8078e7db097292f25afd2bb8d 582 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 40 65 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 SJPD1_1404 3a7a05a8078e7db097292f25afd2bb8d 582 Pfam PF00374 Nickel-dependent hydrogenase 40 561 6.2E-206 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 SJPD1_1404 3a7a05a8078e7db097292f25afd2bb8d 582 Gene3D G3DSA:1.10.645.10 1 561 2.7E-208 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1404 3a7a05a8078e7db097292f25afd2bb8d 582 SUPERFAMILY SSF56762 1 561 2.88E-161 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0869 54035c4cc2016c751c8850fc9eed0efb 463 Pfam PF03573 outer membrane porin, OprD family 109 192 2.7E-7 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 SJPD1_0869 54035c4cc2016c751c8850fc9eed0efb 463 Gene3D G3DSA:2.40.160.10 33 463 1.6E-25 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_2606 93ba22b5354325fcc395fbf6ba6d4c7e 206 SUPERFAMILY SSF52317 4 199 2.29E-49 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2606 93ba22b5354325fcc395fbf6ba6d4c7e 206 Gene3D G3DSA:3.40.50.880 1 203 1.7E-62 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2606 93ba22b5354325fcc395fbf6ba6d4c7e 206 Pfam PF01965 DJ-1/PfpI family 4 179 3.7E-23 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 SJPD1_1708 f0a0a90ccda92b5ca19729c0e654afa8 197 SUPERFAMILY SSF56281 7 183 3.41E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1708 f0a0a90ccda92b5ca19729c0e654afa8 197 SMART SM00849 12 177 4.1E-36 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1708 f0a0a90ccda92b5ca19729c0e654afa8 197 Pfam PF00753 Metallo-beta-lactamase superfamily 10 177 1.2E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1708 f0a0a90ccda92b5ca19729c0e654afa8 197 Gene3D G3DSA:3.60.15.10 1 196 6.7E-48 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_0137 12847ff9c5ca28ab0c4fc2c04121395d 244 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0137 12847ff9c5ca28ab0c4fc2c04121395d 244 Pfam PF00005 ABC transporter 23 172 3.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0137 12847ff9c5ca28ab0c4fc2c04121395d 244 SMART SM00382 31 221 4.7E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0137 12847ff9c5ca28ab0c4fc2c04121395d 244 SUPERFAMILY SSF52540 6 233 4.66E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0137 12847ff9c5ca28ab0c4fc2c04121395d 244 Gene3D G3DSA:3.40.50.300 5 244 2.2E-59 T 13-10-2018 SJPD1_1089 9c55a957591330e0f545fcbc3b86ea4a 317 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 32 307 6.1E-30 T 13-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 SJPD1_1089 9c55a957591330e0f545fcbc3b86ea4a 317 SUPERFAMILY SSF53187 30 309 2.05E-53 T 13-10-2018 SJPD1_1089 9c55a957591330e0f545fcbc3b86ea4a 317 Gene3D G3DSA:3.40.630.10 29 316 7.4E-59 T 13-10-2018 SJPD1_2838 6e2571119cc7d5054921e00e77bf9d26 95 Gene3D G3DSA:3.30.70.100 1 95 4.1E-25 T 13-10-2018 SJPD1_2838 6e2571119cc7d5054921e00e77bf9d26 95 Pfam PF07876 Stress responsive A/B Barrel Domain 2 94 3.4E-24 T 13-10-2018 IPR013097 Stress responsive alpha-beta barrel SJPD1_2838 6e2571119cc7d5054921e00e77bf9d26 95 SUPERFAMILY SSF54909 1 95 3.97E-23 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel SJPD1_2838 6e2571119cc7d5054921e00e77bf9d26 95 SMART SM00886 2 95 2.1E-30 T 13-10-2018 IPR013097 Stress responsive alpha-beta barrel SJPD1_1532 b5d45167a6d2a48be9989a121b71007b 214 Gene3D G3DSA:3.40.50.10230 4 212 1.2E-77 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 SJPD1_1532 b5d45167a6d2a48be9989a121b71007b 214 Pfam PF02570 Precorrin-8X methylmutase 10 206 1.1E-74 T 13-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 SJPD1_1532 b5d45167a6d2a48be9989a121b71007b 214 SUPERFAMILY SSF63965 9 211 4.84E-69 T 13-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 SMART SM00471 240 374 2.6E-10 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 Gene3D G3DSA:3.30.70.270 426 548 2.7E-5 T 13-10-2018 SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 SUPERFAMILY SSF55073 434 519 2.67E-6 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 Pfam PF00990 Diguanylate cyclase, GGDEF domain 431 518 1.0E-5 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 Pfam PF01966 HD domain 245 365 6.7E-20 T 13-10-2018 IPR006674 HD domain SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 Gene3D G3DSA:1.10.3210.10 220 414 4.2E-67 T 13-10-2018 SJPD1_1877 5240dd8a48a65d726f60913989ef8143 561 SUPERFAMILY SSF109604 221 404 2.09E-40 T 13-10-2018 SJPD1_0403 0837a15e9ae2649837ae225a4aafb0f1 201 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 3 175 2.0E-26 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal SJPD1_0403 0837a15e9ae2649837ae225a4aafb0f1 201 SUPERFAMILY SSF48695 9 177 1.08E-18 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_0403 0837a15e9ae2649837ae225a4aafb0f1 201 PIRSF PIRSF000013 2 185 1.6E-12 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 SJPD1_0403 0837a15e9ae2649837ae225a4aafb0f1 201 Gene3D G3DSA:1.10.3820.10 1 183 4.2E-23 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily SJPD1_1850 d6967298734de96c95c54e7b7fc24aa4 447 Gene3D G3DSA:3.20.20.70 82 381 1.5E-39 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1850 d6967298734de96c95c54e7b7fc24aa4 447 Pfam PF13353 4Fe-4S single cluster domain 99 166 6.9E-7 T 13-10-2018 SJPD1_1850 d6967298734de96c95c54e7b7fc24aa4 447 SUPERFAMILY SSF102114 81 303 1.44E-46 T 13-10-2018 SJPD1_1850 d6967298734de96c95c54e7b7fc24aa4 447 SMART SM00729 92 299 6.5E-4 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_1850 d6967298734de96c95c54e7b7fc24aa4 447 Pfam PF04055 Radical SAM superfamily 96 256 9.2E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1850 d6967298734de96c95c54e7b7fc24aa4 447 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 98 109 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_2898 2a8a918480be0c67522e946578d55103 204 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 12 198 2.6E-50 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 SJPD1_2898 2a8a918480be0c67522e946578d55103 204 Gene3D G3DSA:3.30.1360.170 1 202 9.9E-67 T 13-10-2018 SJPD1_2898 2a8a918480be0c67522e946578d55103 204 Pfam PF02511 Thymidylate synthase complementing protein 9 191 4.0E-46 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 SJPD1_2898 2a8a918480be0c67522e946578d55103 204 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 1 204 22.776 T 13-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 SJPD1_2898 2a8a918480be0c67522e946578d55103 204 SUPERFAMILY SSF69796 1 199 3.14E-49 T 13-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 SJPD1_2370 487dce8340e83df9d4656df6f46866ef 187 Pfam PF03352 Methyladenine glycosylase 10 185 2.0E-72 T 13-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 SJPD1_2370 487dce8340e83df9d4656df6f46866ef 187 Gene3D G3DSA:1.10.340.30 5 187 8.4E-75 T 13-10-2018 SJPD1_2370 487dce8340e83df9d4656df6f46866ef 187 SUPERFAMILY SSF48150 6 186 4.32E-71 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 SJPD1_1880 0fa9903b69a81ffbd8b882ad9d24b0de 310 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 22 247 2.6E-9 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase SJPD1_1880 0fa9903b69a81ffbd8b882ad9d24b0de 310 SUPERFAMILY SSF56219 18 305 1.83E-34 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily SJPD1_1880 0fa9903b69a81ffbd8b882ad9d24b0de 310 Gene3D G3DSA:3.60.10.10 14 306 3.5E-37 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 Gene3D G3DSA:1.10.340.30 18 126 1.5E-72 T 13-10-2018 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 Pfam PF14815 NUDIX domain 223 307 7.4E-12 T 13-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 SUPERFAMILY SSF55811 207 307 8.11E-10 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 4 252 4.2E-88 T 13-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 Gene3D G3DSA:1.10.1670.10 6 198 1.5E-72 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 Gene3D G3DSA:3.90.79.10 252 311 6.2E-6 T 13-10-2018 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 SMART SM00525 180 200 0.0011 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 33 160 8.6E-15 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 SUPERFAMILY SSF48150 5 200 4.24E-59 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 SJPD1_0008 6879fcb7cab20028e14c0ccd222fe04d 322 SMART SM00478 36 179 4.7E-32 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 SJPD1_2096 cc9e03852472f55c00c2c51c6d608c50 239 Pfam PF14358 Domain of unknown function (DUF4405) 73 131 1.8E-10 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:3.30.70.1320 134 334 1.1E-300 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:3.30.70.1440 669 866 1.1E-300 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Pfam PF00873 AcrB/AcrD/AcrF family 2 1026 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82693 39 132 3.66E-24 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82693 137 332 7.59E-22 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:1.20.1640.10 513 1023 1.1E-300 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82714 184 275 7.59E-21 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82866 805 1031 5.23E-45 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82693 565 671 1.05E-22 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1034 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:1.20.1640.10 9 512 1.1E-300 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82866 298 501 6.93E-48 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:3.30.2090.10 721 809 1.1E-300 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:3.30.2090.10 180 277 1.1E-300 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 SUPERFAMILY SSF82714 722 806 4.05E-20 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 393 417 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 338 361 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 365 386 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 621 635 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 473 496 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 448 471 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 5.5E-95 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:3.30.70.1430 39 817 1.1E-300 T 13-10-2018 SJPD1_0775 9bb48dafdb1cbc572851370533be0d17 1040 Gene3D G3DSA:3.30.70.1430 567 668 1.1E-300 T 13-10-2018 SJPD1_2792 edc90ec027a86f0c547169b9eafd9045 329 Gene3D G3DSA:3.40.50.720 5 310 3.5E-134 T 13-10-2018 SJPD1_2792 edc90ec027a86f0c547169b9eafd9045 329 TIGRFAM TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase (inverting) 2 327 2.3E-168 T 13-10-2018 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) KEGG: 00520+4.2.1.115|MetaCyc: PWY-6143|MetaCyc: PWY-7330|MetaCyc: PWY-7331|MetaCyc: PWY-7332|MetaCyc: PWY-7719 SJPD1_2792 edc90ec027a86f0c547169b9eafd9045 329 Pfam PF02719 Polysaccharide biosynthesis protein 7 280 2.5E-103 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain SJPD1_2792 edc90ec027a86f0c547169b9eafd9045 329 Gene3D G3DSA:3.90.25.30 167 314 3.5E-134 T 13-10-2018 SJPD1_2792 edc90ec027a86f0c547169b9eafd9045 329 SUPERFAMILY SSF51735 4 269 3.26E-50 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 Pfam PF01220 Dehydroquinase class II 2 137 2.5E-58 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 161 66.878 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 2 141 2.9E-65 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 Gene3D G3DSA:3.40.50.9100 1 152 4.4E-61 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 SUPERFAMILY SSF52304 1 149 4.58E-59 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 PIRSF PIRSF001399 1 145 8.7E-60 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 SJPD1_0340 5509a8b1d8cdcb9a3e9157e1eb5dbce4 161 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 3 138 8.0E-59 T 13-10-2018 SJPD1_0648 7b7655a50a238448bc17b95d7ce19047 309 Pfam PF03547 Membrane transport protein 3 143 5.3E-17 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 SJPD1_0596 5857f51806489bdbf05467331e3a587c 263 SUPERFAMILY SSF56317 1 253 2.09E-40 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_0596 5857f51806489bdbf05467331e3a587c 263 Pfam PF00795 Carbon-nitrogen hydrolase 25 249 7.1E-16 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 SJPD1_0596 5857f51806489bdbf05467331e3a587c 263 Gene3D G3DSA:3.60.110.10 1 261 3.0E-33 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_1427 d888de03ef198205f2654acbfefe224e 185 Gene3D G3DSA:3.40.920.10 1 184 6.8E-53 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 SJPD1_1427 d888de03ef198205f2654acbfefe224e 185 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 11 175 1.6E-24 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 SJPD1_1427 d888de03ef198205f2654acbfefe224e 185 SUPERFAMILY SSF53323 2 180 1.57E-34 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 SJPD1_0699 173aa685342588b24a57e0bdac5917ed 336 SUPERFAMILY SSF50978 78 262 7.32E-10 T 13-10-2018 IPR036322 WD40-repeat-containing domain superfamily GO:0005515 SJPD1_0699 173aa685342588b24a57e0bdac5917ed 336 Gene3D G3DSA:2.130.10.10 56 328 7.1E-13 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 SJPD1_0699 173aa685342588b24a57e0bdac5917ed 336 Pfam PF13360 PQQ-like domain 74 297 1.6E-7 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat SJPD1_1811 af3a529bc9fbef956d583c5d1dbdd488 208 Gene3D G3DSA:3.40.30.10 23 207 5.1E-35 T 13-10-2018 SJPD1_1811 af3a529bc9fbef956d583c5d1dbdd488 208 SUPERFAMILY SSF52833 37 205 9.9E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1811 af3a529bc9fbef956d583c5d1dbdd488 208 Pfam PF13462 Thioredoxin 46 195 6.8E-22 T 13-10-2018 IPR012336 Thioredoxin-like fold SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 SUPERFAMILY SSF53686 10 392 2.1E-129 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 13-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 PIRSF PIRSF001413 2 401 5.1E-150 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 61 383 1.2E-37 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 Gene3D G3DSA:3.40.50.1100 61 389 4.4E-157 T 13-10-2018 SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 Gene3D G3DSA:3.40.50.1100 17 213 4.4E-157 T 13-10-2018 SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 9 396 47.781 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_2128 1657749a70d3fb5c3330f4f752ef5c5e 402 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 14 393 9.6E-156 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 SJPD1_0375 62b0f3586831827649d0bd2548c38429 883 SUPERFAMILY SSF53335 166 588 1.09E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0375 62b0f3586831827649d0bd2548c38429 883 Pfam PF02384 N-6 DNA Methylase 340 539 2.5E-7 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 SJPD1_0375 62b0f3586831827649d0bd2548c38429 883 Gene3D G3DSA:3.40.50.150 274 614 2.9E-30 T 13-10-2018 SJPD1_0107 ef976dc8b6d5c1ada0687c85cdb595b2 239 SMART SM00047 90 238 0.0017 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 SJPD1_0107 ef976dc8b6d5c1ada0687c85cdb595b2 239 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 106 234 5.7E-18 T 13-10-2018 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 SJPD1_0107 ef976dc8b6d5c1ada0687c85cdb595b2 239 Gene3D G3DSA:1.10.530.10 101 238 7.8E-18 T 13-10-2018 SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 SUPERFAMILY SSF90123 8 336 9.68E-50 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 Pfam PF00005 ABC transporter 372 520 1.6E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 SMART SM00382 381 572 1.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 Pfam PF00664 ABC transporter transmembrane region 58 306 1.0E-19 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 Gene3D G3DSA:1.20.1560.10 1 340 2.9E-48 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 SUPERFAMILY SSF52540 350 588 1.17E-78 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1178 aac09cc6d73b4c40b095f7585281db5d 601 Gene3D G3DSA:3.40.50.300 347 601 7.6E-84 T 13-10-2018 SJPD1_2514 9095dbd347c21e1e1233caed8f036ebb 426 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 27 392 1.0E-172 T 13-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like SJPD1_2514 9095dbd347c21e1e1233caed8f036ebb 426 Gene3D G3DSA:3.40.50.2300 29 363 2.2E-130 T 13-10-2018 SJPD1_2514 9095dbd347c21e1e1233caed8f036ebb 426 Pfam PF13433 Periplasmic binding protein domain 27 395 5.8E-171 T 13-10-2018 SJPD1_2514 9095dbd347c21e1e1233caed8f036ebb 426 SUPERFAMILY SSF53822 26 396 1.35E-88 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_2514 9095dbd347c21e1e1233caed8f036ebb 426 Gene3D G3DSA:3.40.50.2300 142 382 2.2E-130 T 13-10-2018 SJPD1_1041 58cb4ad73dbcf47b1c6596e6b3fec16f 115 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 4 93 4.5E-13 T 13-10-2018 IPR010005 Formate hydrogenlyase maturation HycH SJPD1_1703 020be973621b5097d8def8c51fe73b76 187 SUPERFAMILY SSF52833 7 182 1.37E-38 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1703 020be973621b5097d8def8c51fe73b76 187 Pfam PF00578 AhpC/TSA family 12 135 9.3E-15 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 SJPD1_1703 020be973621b5097d8def8c51fe73b76 187 Gene3D G3DSA:3.40.30.10 5 185 1.8E-41 T 13-10-2018 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 SMART SM00357 5 71 9.5E-27 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 Gene3D G3DSA:2.40.50.140 1 71 2.0E-28 T 13-10-2018 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 SUPERFAMILY SSF50249 4 70 5.57E-24 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0298 1fad6be789559781f4560d42d8406559 71 PIRSF PIRSF002599 1 71 6.7E-24 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 Pfam PF00313 'Cold-shock' DNA-binding domain 5 70 2.6E-27 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 PRINTS PR00050 Cold shock protein signature 44 62 6.7E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 PRINTS PR00050 Cold shock protein signature 27 36 6.7E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 PRINTS PR00050 Cold shock protein signature 6 21 6.7E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 SJPD1_0298 1fad6be789559781f4560d42d8406559 71 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 13-10-2018 IPR019844 Cold-shock conserved site SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 SUPERFAMILY SSF56327 143 307 1.44E-43 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 SUPERFAMILY SSF51735 2 143 1.19E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 144 305 2.9E-21 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 Gene3D G3DSA:3.40.50.720 1 143 3.3E-41 T 13-10-2018 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 140 4.1E-30 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 PRINTS PR00086 L-lactate dehydrogenase signature 2 26 4.5E-23 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 PRINTS PR00086 L-lactate dehydrogenase signature 115 135 4.5E-23 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 PRINTS PR00086 L-lactate dehydrogenase signature 139 157 4.5E-23 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 PRINTS PR00086 L-lactate dehydrogenase signature 27 51 4.5E-23 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 PRINTS PR00086 L-lactate dehydrogenase signature 169 182 4.5E-23 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 PIRSF PIRSF000102 1 309 6.4E-89 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 SJPD1_0396 356cb8b50fdd02891be3bdb89099c7a6 309 Gene3D G3DSA:3.90.110.10 144 309 8.3E-48 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 224 240 - T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 Pfam PF00472 RF-1 domain 207 317 4.4E-39 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 Gene3D G3DSA:3.30.160.20 207 293 1.5E-91 T 13-10-2018 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 4 352 3.0E-157 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 Gene3D G3DSA:3.30.70.1660 109 338 1.5E-91 T 13-10-2018 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 Pfam PF03462 PCRF domain 11 200 3.1E-66 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 2 354 38.808 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 SUPERFAMILY SSF75620 9 350 1.15E-129 T 13-10-2018 SJPD1_0108 b2e41fbe40f2ba56c6628d64bb18285e 355 SMART SM00937 61 175 5.1E-56 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 SJPD1_0989 64e95fac51f6dfa915f96aaacdd6564b 222 SUPERFAMILY SSF52540 1 221 1.34E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0989 64e95fac51f6dfa915f96aaacdd6564b 222 Gene3D G3DSA:3.40.50.300 1 222 1.6E-62 T 13-10-2018 SJPD1_0989 64e95fac51f6dfa915f96aaacdd6564b 222 SMART SM00382 30 219 1.8E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0989 64e95fac51f6dfa915f96aaacdd6564b 222 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0989 64e95fac51f6dfa915f96aaacdd6564b 222 Pfam PF00005 ABC transporter 21 170 3.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1725 9bed91eb093d15f35629df24e9f7d750 134 SUPERFAMILY SSF46785 3 132 3.38E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1725 9bed91eb093d15f35629df24e9f7d750 134 Pfam PF02082 Transcriptional regulator 1 80 8.8E-18 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type SJPD1_1725 9bed91eb093d15f35629df24e9f7d750 134 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 132 1.1E-31 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type SJPD1_1725 9bed91eb093d15f35629df24e9f7d750 134 Gene3D G3DSA:1.10.10.10 1 134 5.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1804 e4978879c90342237082376521ef2ca8 529 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 1.3E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 1.3E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 SMART SM00304 198 252 2.4E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 338 491 4.7E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 Gene3D G3DSA:3.30.450.290 34 170 2.1E-9 T 13-10-2018 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 SMART SM00283 267 521 1.9E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 SUPERFAMILY SSF58104 220 528 1.03E-58 T 13-10-2018 SJPD1_1804 e4978879c90342237082376521ef2ca8 529 Gene3D G3DSA:1.10.287.950 199 528 6.1E-58 T 13-10-2018 SJPD1_2519 349e229ef2d95d72917cd45dfa39e78d 315 SUPERFAMILY SSF52540 4 287 5.78E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2519 349e229ef2d95d72917cd45dfa39e78d 315 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 35 165 4.1E-64 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 SJPD1_2519 349e229ef2d95d72917cd45dfa39e78d 315 PIRSF PIRSF002849 1 315 1.4E-129 T 13-10-2018 SJPD1_2519 349e229ef2d95d72917cd45dfa39e78d 315 Gene3D G3DSA:1.10.8.300 195 312 2.3E-36 T 13-10-2018 SJPD1_2519 349e229ef2d95d72917cd45dfa39e78d 315 Gene3D G3DSA:3.40.50.300 16 182 4.8E-43 T 13-10-2018 SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 SUPERFAMILY SSF55048 129 193 1.83E-12 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 299 7.9E-17 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 5 288 1.0E-92 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 Gene3D G3DSA:3.30.70.250 124 197 5.1E-80 T 13-10-2018 SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 Gene3D G3DSA:3.40.366.10 6 282 5.1E-80 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 PIRSF PIRSF000446 1 307 2.7E-76 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 Pfam PF00698 Acyl transferase domain 5 274 1.6E-33 T 13-10-2018 IPR014043 Acyl transferase SJPD1_0635 8a19ebd51a95e5e1890a4fda071e0dfa 307 SUPERFAMILY SSF52151 5 294 5.75E-52 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase SJPD1_0952 92555823c15fff21a4154e6c3dc629fb 224 SUPERFAMILY SSF47413 2 66 2.4E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0952 92555823c15fff21a4154e6c3dc629fb 224 SMART SM00530 4 61 5.3E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0952 92555823c15fff21a4154e6c3dc629fb 224 Gene3D G3DSA:1.10.260.40 2 72 4.4E-14 T 13-10-2018 SJPD1_0952 92555823c15fff21a4154e6c3dc629fb 224 Pfam PF01381 Helix-turn-helix 9 61 1.7E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_2031 f57863d99da15ec3e3d1045668df46be 387 Gene3D G3DSA:3.90.1150.10 18 381 5.3E-117 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2031 f57863d99da15ec3e3d1045668df46be 387 Gene3D G3DSA:3.40.640.10 64 277 5.3E-117 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2031 f57863d99da15ec3e3d1045668df46be 387 SUPERFAMILY SSF53383 3 383 4.21E-94 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2031 f57863d99da15ec3e3d1045668df46be 387 Pfam PF00155 Aminotransferase class I and II 51 378 2.2E-32 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 4.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 13 4.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 399 4.2E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 SMART SM00283 274 535 3.4E-45 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 SUPERFAMILY SSF58104 228 534 4.36E-58 T 13-10-2018 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 175 1.3E-20 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 Gene3D G3DSA:1.10.287.950 216 535 8.5E-60 T 13-10-2018 SJPD1_0922 e3120217ff6310b7d59ea9bbe838f0f4 535 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 454 1.3E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 Gene3D G3DSA:3.40.50.720 5 261 9.0E-62 T 13-10-2018 SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.8E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.8E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.8E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 SUPERFAMILY SSF51735 5 273 1.03E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 7.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 7.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 7.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 7.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.6E-19 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2650 776b610a6657f23df4b2a310ab690266 277 Pfam PF00106 short chain dehydrogenase 7 189 3.1E-42 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0068 50156cbe2550caf961bc6fc6cd73f445 120 Gene3D G3DSA:1.10.260.40 51 118 8.2E-7 T 13-10-2018 SJPD1_0068 50156cbe2550caf961bc6fc6cd73f445 120 SMART SM00530 60 114 7.7E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0068 50156cbe2550caf961bc6fc6cd73f445 120 Pfam PF01381 Helix-turn-helix 62 112 1.0E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0068 50156cbe2550caf961bc6fc6cd73f445 120 SUPERFAMILY SSF47413 59 116 5.91E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 SMART SM00342 28 112 4.0E-27 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 65 108 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 Pfam PF06445 GyrI-like small molecule binding domain 143 291 6.5E-24 T 13-10-2018 IPR029442 GyrI-like small molecule binding domain SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 81 96 7.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 96 112 7.9E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 SMART SM00871 140 291 9.9E-19 T 13-10-2018 IPR010499 Bacterial transcription activator, effector binding SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 SUPERFAMILY SSF55136 141 291 1.15E-25 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 Gene3D G3DSA:3.20.80.10 140 292 9.2E-28 T 13-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 Pfam PF12833 Helix-turn-helix domain 34 113 4.9E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 Gene3D G3DSA:1.10.10.60 3 61 9.5E-16 T 13-10-2018 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 SUPERFAMILY SSF46689 14 59 1.37E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 Gene3D G3DSA:1.10.10.60 62 114 2.6E-15 T 13-10-2018 SJPD1_1267 f98cead3efa37cd1a6abcee8cead66ca 293 SUPERFAMILY SSF46689 64 115 4.93E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1729 7a223e913bb70a44eaf5456a1bb6fb10 236 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 2 234 4.9E-79 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 SJPD1_1729 7a223e913bb70a44eaf5456a1bb6fb10 236 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 1 234 37.997 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 SJPD1_1729 7a223e913bb70a44eaf5456a1bb6fb10 236 Pfam PF13649 Methyltransferase domain 55 150 3.5E-16 T 13-10-2018 SJPD1_1729 7a223e913bb70a44eaf5456a1bb6fb10 236 Gene3D G3DSA:3.40.50.150 15 234 2.2E-64 T 13-10-2018 SJPD1_1729 7a223e913bb70a44eaf5456a1bb6fb10 236 SUPERFAMILY SSF53335 14 234 4.41E-39 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1729 7a223e913bb70a44eaf5456a1bb6fb10 236 PIRSF PIRSF006325 1 235 1.0E-87 T 13-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 SJPD1_1925 faee68d219b521c3d794bbe7ac1d3bdd 367 Pfam PF09626 Dihaem cytochrome c 240 357 1.2E-36 T 13-10-2018 IPR018588 Dihaem cytochrome c SJPD1_1925 faee68d219b521c3d794bbe7ac1d3bdd 367 SUPERFAMILY SSF81342 1 185 2.82E-27 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_1925 faee68d219b521c3d794bbe7ac1d3bdd 367 Pfam PF01292 Prokaryotic cytochrome b561 7 181 5.1E-19 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 SJPD1_1925 faee68d219b521c3d794bbe7ac1d3bdd 367 SUPERFAMILY SSF48695 234 355 9.22E-5 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_1925 faee68d219b521c3d794bbe7ac1d3bdd 367 Gene3D G3DSA:1.20.950.20 1 170 5.2E-13 T 13-10-2018 SJPD1_2675 c873078030b2689f17f783d8996f00e9 190 Pfam PF00551 Formyl transferase 4 185 2.9E-41 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_2675 c873078030b2689f17f783d8996f00e9 190 Gene3D G3DSA:3.40.50.170 2 190 2.8E-61 T 13-10-2018 SJPD1_2675 c873078030b2689f17f783d8996f00e9 190 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 5 190 23.505 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 SJPD1_2675 c873078030b2689f17f783d8996f00e9 190 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 4 189 6.4E-49 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 SJPD1_2675 c873078030b2689f17f783d8996f00e9 190 SUPERFAMILY SSF53328 4 189 3.66E-46 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 SJPD1_1124 c5d35b4e5e0ebba99800dd3f48ddb540 182 SUPERFAMILY SSF52499 1 180 2.75E-45 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 SJPD1_1124 c5d35b4e5e0ebba99800dd3f48ddb540 182 Gene3D G3DSA:3.40.50.850 1 182 4.7E-53 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 SJPD1_1124 c5d35b4e5e0ebba99800dd3f48ddb540 182 Pfam PF00857 Isochorismatase family 8 157 8.0E-26 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 SJPD1_1780 2c2dc66c3839687319754fceb4464537 266 SMART SM00382 41 178 5.4E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1780 2c2dc66c3839687319754fceb4464537 266 Gene3D G3DSA:3.40.50.300 5 168 1.1E-8 T 13-10-2018 SJPD1_1780 2c2dc66c3839687319754fceb4464537 266 Pfam PF13401 AAA domain 45 153 1.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1780 2c2dc66c3839687319754fceb4464537 266 SUPERFAMILY SSF52540 26 235 1.11E-19 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1380 e481c4dd21e1c0e565d46a543e797aa7 185 Pfam PF02581 Thiamine monophosphate synthase 5 181 6.1E-27 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1380 e481c4dd21e1c0e565d46a543e797aa7 185 Gene3D G3DSA:3.20.20.70 1 185 2.8E-36 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1380 e481c4dd21e1c0e565d46a543e797aa7 185 SUPERFAMILY SSF51391 3 184 3.01E-33 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_2322 d4a3b7d31cf6be33c26785738a68adec 533 Gene3D G3DSA:1.10.287.950 201 533 1.2E-55 T 13-10-2018 SJPD1_2322 d4a3b7d31cf6be33c26785738a68adec 533 SMART SM00283 263 531 8.4E-44 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2322 d4a3b7d31cf6be33c26785738a68adec 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 349 468 2.1E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2322 d4a3b7d31cf6be33c26785738a68adec 533 SUPERFAMILY SSF58104 223 532 2.09E-55 T 13-10-2018 SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 3 153 1.3E-58 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 SUPERFAMILY SSF56784 3 168 1.18E-43 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 Pfam PF13242 HAD-hyrolase-like 99 140 3.2E-10 T 13-10-2018 SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 3 141 5.4E-34 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 PIRSF PIRSF004682 1 163 4.3E-62 T 13-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 3 144 3.9E-42 T 13-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 SJPD1_2254 fbbd4f22940f92f5693e1d03c0934826 170 Gene3D G3DSA:3.40.50.1000 1 168 9.1E-55 T 13-10-2018 IPR023214 HAD superfamily SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 ProSitePatterns PS00802 Transketolase signature 2. 454 470 - T 13-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 SUPERFAMILY SSF52518 2 314 2.12E-104 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 ProSitePatterns PS00801 Transketolase signature 1. 15 35 - T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 Gene3D G3DSA:3.40.50.970 329 521 4.4E-66 T 13-10-2018 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 8 316 3.2E-123 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 SUPERFAMILY SSF52518 338 511 1.49E-57 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 SUPERFAMILY SSF52922 519 644 3.14E-34 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 Gene3D G3DSA:3.40.50.920 524 652 3.8E-32 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 8 637 5.9E-237 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 SMART SM00861 345 511 3.6E-59 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 Gene3D G3DSA:3.40.50.970 4 328 3.4E-113 T 13-10-2018 SJPD1_2405 2b08f618b18eb0fccfb0fffa05f5d98b 664 Pfam PF02779 Transketolase, pyrimidine binding domain 345 510 2.3E-39 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 6 711 2.2E-146 T 13-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 4 202 1.1E-39 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 Gene3D G3DSA:3.40.50.300 258 456 1.6E-35 T 13-10-2018 SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 SMART SM00487 255 469 4.4E-11 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 Gene3D G3DSA:3.90.1570.50 68 253 5.4E-24 T 13-10-2018 SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 Pfam PF04851 Type III restriction enzyme, res subunit 258 442 1.6E-15 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 SUPERFAMILY SSF52540 224 486 2.3E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 Pfam PF11867 Domain of unknown function (DUF3387) 711 1044 1.5E-94 T 13-10-2018 IPR021810 Protein of unknown function DUF3387 SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 SUPERFAMILY SSF52540 286 710 4.61E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2693 2731d6e23fd3d517e6fac7feb00e5e48 1047 Gene3D G3DSA:3.40.50.300 457 719 1.2E-43 T 13-10-2018 SJPD1_2164 0c42ca35b94bbd5cc2a566a5c494d8a7 397 Gene3D G3DSA:3.40.50.620 145 351 5.4E-48 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2164 0c42ca35b94bbd5cc2a566a5c494d8a7 397 Pfam PF01747 ATP-sulfurylase 149 350 1.2E-48 T 13-10-2018 IPR024951 Sulphate adenylyltransferase catalytic domain GO:0004781 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 SJPD1_2164 0c42ca35b94bbd5cc2a566a5c494d8a7 397 SUPERFAMILY SSF88697 5 139 5.97E-18 T 13-10-2018 IPR015947 PUA-like superfamily SJPD1_2164 0c42ca35b94bbd5cc2a566a5c494d8a7 397 SUPERFAMILY SSF52374 143 357 3.56E-53 T 13-10-2018 SJPD1_2164 0c42ca35b94bbd5cc2a566a5c494d8a7 397 Gene3D G3DSA:3.10.400.10 6 142 8.8E-12 T 13-10-2018 SJPD1_2164 0c42ca35b94bbd5cc2a566a5c494d8a7 397 Pfam PF14306 PUA-like domain 6 137 1.3E-10 T 13-10-2018 IPR025980 ATP-sulfurylase PUA-like domain KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PIRSF PIRSF004557 1 419 2.5E-120 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 ProSitePatterns PS00756 Protein secY signature 2. 160 177 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 SUPERFAMILY SSF103491 4 407 2.22E-108 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 Hamap MF_01465 Protein translocase subunit SecY [secY]. 1 416 26.829 T 13-10-2018 IPR026593 Protein translocase subunit SecY SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 Pfam PF00344 SecY translocase 62 400 1.6E-98 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 7 411 6.5E-105 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 Gene3D G3DSA:1.10.3370.10 1 412 9.6E-139 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 ProSitePatterns PS00755 Protein secY signature 1. 62 81 - T 13-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 259 278 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 9 27 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 385 403 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 298 320 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 353 371 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 61 81 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 141 166 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 101 124 1.7E-85 T 13-10-2018 SJPD1_2420 4b736b94f7cd2a480dd916d5e56bf127 420 PRINTS PR00303 Preprotein translocase SecY subunit signature 167 190 1.7E-85 T 13-10-2018 SJPD1_1992 dbdc27143578dce56c42cfe8e3b78590 199 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 1 196 34.527 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 SJPD1_1992 dbdc27143578dce56c42cfe8e3b78590 199 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 3 191 5.0E-37 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 SJPD1_1992 dbdc27143578dce56c42cfe8e3b78590 199 Gene3D G3DSA:3.20.20.70 1 195 5.1E-58 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1992 dbdc27143578dce56c42cfe8e3b78590 199 SUPERFAMILY SSF51366 1 194 6.44E-51 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_0509 b842bfa7c3f1d9700449f6b72d78f328 674 Gene3D G3DSA:3.40.50.300 65 289 7.1E-41 T 13-10-2018 SJPD1_0509 b842bfa7c3f1d9700449f6b72d78f328 674 SUPERFAMILY SSF52540 59 252 2.3E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0509 b842bfa7c3f1d9700449f6b72d78f328 674 Pfam PF00350 Dynamin family 65 219 1.0E-27 T 13-10-2018 IPR022812 Dynamin superfamily SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PIRSF PIRSF001369 2 375 1.4E-117 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type SJPD1_1931 b43889b2a0e850c0840777b681468454 375 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 2.4E-112 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 Gene3D G3DSA:1.10.230.10 224 322 5.6E-119 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain SJPD1_1931 b43889b2a0e850c0840777b681468454 375 SUPERFAMILY SSF48256 8 375 6.15E-122 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PRINTS PR00143 Citrate synthase signature 328 342 3.9E-39 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PRINTS PR00143 Citrate synthase signature 198 226 3.9E-39 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PRINTS PR00143 Citrate synthase signature 251 271 3.9E-39 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PRINTS PR00143 Citrate synthase signature 126 139 3.9E-39 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PRINTS PR00143 Citrate synthase signature 308 324 3.9E-39 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 PRINTS PR00143 Citrate synthase signature 176 191 3.9E-39 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 Gene3D G3DSA:1.10.580.10 31 355 5.6E-119 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 SJPD1_1931 b43889b2a0e850c0840777b681468454 375 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 1.8E-146 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 SJPD1_1638 4fcbe9a0ad498acb59593c487920ceaa 269 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 4 257 2.0E-77 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 SJPD1_1638 4fcbe9a0ad498acb59593c487920ceaa 269 SUPERFAMILY SSF52402 16 216 1.46E-33 T 13-10-2018 SJPD1_1638 4fcbe9a0ad498acb59593c487920ceaa 269 PIRSF PIRSF006661 1 269 1.2E-93 T 13-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 SJPD1_1638 4fcbe9a0ad498acb59593c487920ceaa 269 Gene3D G3DSA:3.40.50.620 1 164 5.5E-23 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1582 e21dccb20032fb2e0457767cd384bc72 144 SUPERFAMILY SSF51735 9 141 6.19E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1582 e21dccb20032fb2e0457767cd384bc72 144 Gene3D G3DSA:3.40.50.720 7 144 8.0E-41 T 13-10-2018 SJPD1_1582 e21dccb20032fb2e0457767cd384bc72 144 SMART SM00881 19 113 1.2E-20 T 13-10-2018 IPR003781 CoA-binding GO:0048037 SJPD1_1582 e21dccb20032fb2e0457767cd384bc72 144 Pfam PF13380 CoA binding domain 24 139 2.1E-37 T 13-10-2018 IPR003781 CoA-binding GO:0048037 SJPD1_0906 c0d13be7f86f9bfd8ee97691a469826a 168 SUPERFAMILY SSF50022 29 155 1.07E-28 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_0906 c0d13be7f86f9bfd8ee97691a469826a 168 Pfam PF00355 Rieske [2Fe-2S] domain 51 142 6.4E-12 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 SJPD1_0906 c0d13be7f86f9bfd8ee97691a469826a 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 94 105 4.5E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_0906 c0d13be7f86f9bfd8ee97691a469826a 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 127 139 4.5E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_0906 c0d13be7f86f9bfd8ee97691a469826a 168 PRINTS PR00162 Rieske 2Fe-2S subunit signature 115 127 4.5E-8 T 13-10-2018 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 SJPD1_0906 c0d13be7f86f9bfd8ee97691a469826a 168 Gene3D G3DSA:2.102.10.10 39 154 3.0E-29 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_0362 2df368ca88095980d0234382b04b3ce4 255 Pfam PF01797 Transposase IS200 like 15 125 6.4E-15 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SJPD1_0362 2df368ca88095980d0234382b04b3ce4 255 SMART SM01321 11 125 2.3E-36 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SJPD1_0362 2df368ca88095980d0234382b04b3ce4 255 Gene3D G3DSA:1.10.10.60 216 255 4.4E-5 T 13-10-2018 SJPD1_0362 2df368ca88095980d0234382b04b3ce4 255 Gene3D G3DSA:3.30.70.1290 4 158 1.1E-31 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 SJPD1_0362 2df368ca88095980d0234382b04b3ce4 255 SUPERFAMILY SSF143422 11 131 7.59E-23 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 SJPD1_2430 6f83e49111eee4dab2fd459541edf4da 62 Pfam PF00831 Ribosomal L29 protein 5 58 1.2E-17 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2430 6f83e49111eee4dab2fd459541edf4da 62 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 15.147 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2430 6f83e49111eee4dab2fd459541edf4da 62 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 59 5.8E-20 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2430 6f83e49111eee4dab2fd459541edf4da 62 SUPERFAMILY SSF46561 1 59 2.88E-16 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2430 6f83e49111eee4dab2fd459541edf4da 62 Gene3D G3DSA:1.10.287.310 1 62 2.4E-17 T 13-10-2018 SJPD1_2430 6f83e49111eee4dab2fd459541edf4da 62 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 13-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_1818 bd34ea4ea38304ab7f913fb54b5143fb 478 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 15 469 3.3E-116 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 SJPD1_1818 bd34ea4ea38304ab7f913fb54b5143fb 478 Pfam PF02321 Outer membrane efflux protein 291 467 4.0E-17 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1818 bd34ea4ea38304ab7f913fb54b5143fb 478 Pfam PF02321 Outer membrane efflux protein 66 258 1.5E-23 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1818 bd34ea4ea38304ab7f913fb54b5143fb 478 SUPERFAMILY SSF56954 4 470 2.49E-87 T 13-10-2018 SJPD1_1818 bd34ea4ea38304ab7f913fb54b5143fb 478 Gene3D G3DSA:2.20.200.10 102 354 1.3E-110 T 13-10-2018 SJPD1_1818 bd34ea4ea38304ab7f913fb54b5143fb 478 Gene3D G3DSA:1.20.1600.10 57 469 1.3E-110 T 13-10-2018 SJPD1_0485 7126404e2945bd342a94bbeb3f4d448d 191 PIRSF PIRSF003078 3 189 4.4E-41 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SJPD1_0485 7126404e2945bd342a94bbeb3f4d448d 191 Gene3D G3DSA:3.40.50.150 3 189 1.6E-40 T 13-10-2018 SJPD1_0485 7126404e2945bd342a94bbeb3f4d448d 191 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 5 185 21.772 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SJPD1_0485 7126404e2945bd342a94bbeb3f4d448d 191 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 17 173 1.1E-37 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SJPD1_0485 7126404e2945bd342a94bbeb3f4d448d 191 SUPERFAMILY SSF53335 5 171 3.01E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0485 7126404e2945bd342a94bbeb3f4d448d 191 Pfam PF02527 rRNA small subunit methyltransferase G 16 176 4.6E-38 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 SJPD1_2685 d333cdd6e1338583dadcdefc2e726e2d 194 Pfam PF05565 Siphovirus Gp157 7 148 2.0E-7 T 13-10-2018 IPR008840 Siphovirus Gp157 SJPD1_0618 1ecf59e427ce25d69b4f610e91b92b24 261 SUPERFAMILY SSF52540 1 259 6.88E-61 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0618 1ecf59e427ce25d69b4f610e91b92b24 261 Gene3D G3DSA:3.40.50.300 1 261 1.5E-76 T 13-10-2018 SJPD1_0618 1ecf59e427ce25d69b4f610e91b92b24 261 Pfam PF13614 AAA domain 3 180 1.1E-66 T 13-10-2018 IPR025669 AAA domain SJPD1_0524 af4b77e4635640f971bb5e6a19532987 81 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 80 21.55 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 SJPD1_0524 af4b77e4635640f971bb5e6a19532987 81 Pfam PF02416 mttA/Hcf106 family 5 50 3.6E-21 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 SJPD1_0524 af4b77e4635640f971bb5e6a19532987 81 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.8E-22 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 SJPD1_2426 9f4b3bc73f1d751b87528892acb1bcfe 181 PIRSF PIRSF002161 1 181 1.6E-57 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2426 9f4b3bc73f1d751b87528892acb1bcfe 181 Pfam PF00673 ribosomal L5P family C-terminus 84 177 2.3E-35 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2426 9f4b3bc73f1d751b87528892acb1bcfe 181 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 38.329 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2426 9f4b3bc73f1d751b87528892acb1bcfe 181 Pfam PF00281 Ribosomal protein L5 24 80 3.6E-20 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2426 9f4b3bc73f1d751b87528892acb1bcfe 181 SUPERFAMILY SSF55282 3 178 3.3E-64 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2426 9f4b3bc73f1d751b87528892acb1bcfe 181 Gene3D G3DSA:3.30.1440.10 1 179 3.5E-68 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2066 c7a3891b26b0a0f36a7a23adafb05ac0 98 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 98 17.251 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 SJPD1_2066 c7a3891b26b0a0f36a7a23adafb05ac0 98 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 13 98 3.2E-26 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 SJPD1_2066 c7a3891b26b0a0f36a7a23adafb05ac0 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 28 44 1.4E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 SJPD1_2066 c7a3891b26b0a0f36a7a23adafb05ac0 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 62 78 1.4E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 SJPD1_2066 c7a3891b26b0a0f36a7a23adafb05ac0 98 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 83 96 1.4E-12 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 SJPD1_2066 c7a3891b26b0a0f36a7a23adafb05ac0 98 Pfam PF02049 Flagellar hook-basal body complex protein FliE 15 98 2.0E-24 T 13-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 Gene3D G3DSA:3.30.70.270 13 165 8.4E-20 T 13-10-2018 SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 SUPERFAMILY SSF141868 181 412 1.12E-62 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 Gene3D G3DSA:3.20.20.450 174 414 5.5E-68 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 Pfam PF00563 EAL domain 181 406 1.4E-55 T 13-10-2018 IPR001633 EAL domain SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 SMART SM00052 175 411 1.4E-50 T 13-10-2018 IPR001633 EAL domain SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 SMART SM00267 2 159 3.9E-6 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 32 157 1.3E-10 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 16 153 4.4E-11 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2753 c62a793fff429d72e545ee9ad7289f62 414 SUPERFAMILY SSF55073 18 158 2.98E-19 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 Pfam PF00072 Response regulator receiver domain 5 114 5.9E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 SUPERFAMILY SSF52172 3 126 1.99E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 220 5.3E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 SMART SM00862 144 220 4.3E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 Gene3D G3DSA:1.10.10.10 121 222 1.5E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 Gene3D G3DSA:3.40.50.2300 1 120 4.9E-31 T 13-10-2018 SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 SUPERFAMILY SSF46894 128 221 3.87E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1923 a351117bd06f797889954996e9b6ea3d 222 SMART SM00448 3 114 2.7E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 SUPERFAMILY SSF52172 5 179 1.07E-36 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 Pfam PF00072 Response regulator receiver domain 9 118 9.5E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 Gene3D G3DSA:3.40.50.2300 4 130 2.1E-34 T 13-10-2018 SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 SMART SM00862 151 221 4.8E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 221 9.2E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 Gene3D G3DSA:1.10.10.10 132 226 9.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2392 63fe8351fae29f3171dc1b3e7546fcb7 226 SMART SM00448 7 118 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 SMART SM00411 1 90 7.9E-31 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 SUPERFAMILY SSF47729 1 90 1.47E-25 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 Gene3D G3DSA:4.10.520.10 1 92 4.6E-28 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.2E-8 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.2E-8 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.2E-8 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 SJPD1_1568 4c53e82b8b4e4874638eb029b4a5dda3 92 Pfam PF00216 Bacterial DNA-binding protein 1 89 3.5E-26 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 SUPERFAMILY SSF48179 186 306 8.5E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 186 306 1.9E-25 T 13-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 Gene3D G3DSA:1.10.1040.10 186 311 1.1E-30 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 306 4.5E-65 T 13-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 157 1.4E-29 T 13-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 Gene3D G3DSA:3.40.50.720 1 185 1.0E-41 T 13-10-2018 SJPD1_1697 ecefa709648ee3c9e3d8d61f2950c2dd 311 SUPERFAMILY SSF51735 1 125 2.03E-11 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0918 e37d39515881213ed1647c9d9a488bea 254 Gene3D G3DSA:3.40.50.150 18 254 1.1E-49 T 13-10-2018 SJPD1_0918 e37d39515881213ed1647c9d9a488bea 254 Pfam PF08241 Methyltransferase domain 37 127 7.5E-22 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 SJPD1_0918 e37d39515881213ed1647c9d9a488bea 254 SUPERFAMILY SSF53335 4 207 1.52E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1014 07e6dd4dbd300de0e1bdb0b271d5809b 129 SUPERFAMILY SSF46955 26 89 9.52E-6 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily SJPD1_1014 07e6dd4dbd300de0e1bdb0b271d5809b 129 Pfam PF12728 Helix-turn-helix domain 26 78 4.2E-8 T 13-10-2018 SJPD1_2497 847f7e12a0d824fa695917c24e1bf4fa 698 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 164 1.6E-6 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_2497 847f7e12a0d824fa695917c24e1bf4fa 698 Gene3D G3DSA:2.170.130.10 55 175 5.1E-13 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_2497 847f7e12a0d824fa695917c24e1bf4fa 698 Gene3D G3DSA:2.40.170.20 176 698 7.9E-72 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_2497 847f7e12a0d824fa695917c24e1bf4fa 698 Pfam PF00593 TonB dependent receptor 245 697 2.6E-32 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_2497 847f7e12a0d824fa695917c24e1bf4fa 698 SUPERFAMILY SSF56935 51 698 3.89E-87 T 13-10-2018 SJPD1_2497 847f7e12a0d824fa695917c24e1bf4fa 698 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 681 698 - T 13-10-2018 IPR010917 TonB-dependent receptor, conserved site SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Gene3D G3DSA:1.10.10.160 109 190 3.9E-59 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Pfam PF13361 UvrD-like helicase C-terminal domain 271 654 3.4E-44 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SJPD1_1777 62db722888b654a1c724d7d68a787814 676 SUPERFAMILY SSF52540 4 659 9.41E-111 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Gene3D G3DSA:1.10.486.10 481 579 6.1E-32 T 13-10-2018 SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Gene3D G3DSA:1.10.486.10 373 416 1.6E-24 T 13-10-2018 SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Gene3D G3DSA:3.40.50.300 580 671 6.1E-32 T 13-10-2018 SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Gene3D G3DSA:3.40.50.300 274 372 1.6E-24 T 13-10-2018 SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 264 2.2E-42 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 SJPD1_1777 62db722888b654a1c724d7d68a787814 676 Gene3D G3DSA:3.40.50.300 6 266 3.9E-59 T 13-10-2018 SJPD1_0926 93c11177ff290d498bb66b6f5228e8ed 313 Gene3D G3DSA:3.40.190.10 27 308 4.5E-97 T 13-10-2018 SJPD1_0926 93c11177ff290d498bb66b6f5228e8ed 313 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 5 309 1.2E-108 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family SJPD1_0926 93c11177ff290d498bb66b6f5228e8ed 313 Pfam PF16868 NMT1-like family 27 308 2.0E-93 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family SJPD1_0926 93c11177ff290d498bb66b6f5228e8ed 313 SUPERFAMILY SSF53850 22 309 3.89E-73 T 13-10-2018 SJPD1_0926 93c11177ff290d498bb66b6f5228e8ed 313 Gene3D G3DSA:3.40.190.10 111 247 4.5E-97 T 13-10-2018 SJPD1_0118 afd0aeab79d3b3c0af515b0483099052 231 Gene3D G3DSA:3.40.50.1390 7 147 8.5E-8 T 13-10-2018 SJPD1_0118 afd0aeab79d3b3c0af515b0483099052 231 Pfam PF00239 Resolvase, N terminal domain 12 133 4.7E-7 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SJPD1_0118 afd0aeab79d3b3c0af515b0483099052 231 SUPERFAMILY SSF53041 9 134 1.26E-6 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 SJPD1_0449 c6be2cb05b0d2bb1308ca69ae14fde82 422 SUPERFAMILY SSF55469 71 217 4.28E-5 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_0449 c6be2cb05b0d2bb1308ca69ae14fde82 422 Gene3D G3DSA:3.40.109.10 4 421 1.3E-85 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_0449 c6be2cb05b0d2bb1308ca69ae14fde82 422 TIGRFAM TIGR03605 antibiot_sagB: SagB-type dehydrogenase domain 52 206 6.7E-23 T 13-10-2018 IPR020051 SagB-type dehydrogenase domain SJPD1_0449 c6be2cb05b0d2bb1308ca69ae14fde82 422 Gene3D G3DSA:3.40.109.10 21 241 1.3E-85 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_0449 c6be2cb05b0d2bb1308ca69ae14fde82 422 SUPERFAMILY SSF55469 267 422 8.25E-11 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_0449 c6be2cb05b0d2bb1308ca69ae14fde82 422 Pfam PF00881 Nitroreductase family 273 422 1.9E-8 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 SJPD1_0574 78c61496c30990262a066958ee4ad7aa 441 Gene3D G3DSA:2.40.160.10 18 441 7.6E-25 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_0574 78c61496c30990262a066958ee4ad7aa 441 Pfam PF03573 outer membrane porin, OprD family 115 440 2.6E-10 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 SJPD1_0574 78c61496c30990262a066958ee4ad7aa 441 SUPERFAMILY SSF56935 288 441 3.15E-6 T 13-10-2018 SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 Pfam PF02421 Ferrous iron transport protein B 5 159 3.2E-57 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 SUPERFAMILY SSF52540 4 167 9.3E-34 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 Gene3D G3DSA:3.40.50.300 5 190 5.8E-39 T 13-10-2018 SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 687 9.1E-188 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 Pfam PF07664 Ferrous iron transport protein B C terminus 459 511 1.9E-15 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 Pfam PF07670 Nucleoside recognition 355 448 8.2E-14 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 SJPD1_2444 19e0150bcc4e243248d6aa32cc1a0d0e 720 Pfam PF07670 Nucleoside recognition 516 688 2.7E-32 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 SJPD1_2181 e3aa923e06d6ef156a949cf99d98f02f 452 Gene3D G3DSA:1.20.1600.10 51 450 2.6E-94 T 13-10-2018 SJPD1_2181 e3aa923e06d6ef156a949cf99d98f02f 452 Pfam PF02321 Outer membrane efflux protein 262 441 5.3E-33 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2181 e3aa923e06d6ef156a949cf99d98f02f 452 Pfam PF02321 Outer membrane efflux protein 53 234 9.4E-28 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2181 e3aa923e06d6ef156a949cf99d98f02f 452 PIRSF PIRSF001892 6 449 9.7E-123 T 13-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 SJPD1_2181 e3aa923e06d6ef156a949cf99d98f02f 452 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 50 444 1.8E-68 T 13-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 SJPD1_2181 e3aa923e06d6ef156a949cf99d98f02f 452 SUPERFAMILY SSF56954 38 443 3.14E-90 T 13-10-2018 SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 2.5E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 Pfam PF00072 Response regulator receiver domain 3 112 1.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 SUPERFAMILY SSF52172 1 177 2.56E-35 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 SMART SM00448 1 112 1.7E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 Gene3D G3DSA:3.40.50.2300 1 118 6.2E-39 T 13-10-2018 SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 Gene3D G3DSA:1.10.10.10 119 221 2.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2484 cd814a9f090d407a60071c5307713eaa 224 SMART SM00862 144 219 7.5E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 Gene3D G3DSA:3.30.1330.60 37 164 4.2E-35 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 Pfam PF00691 OmpA family 62 159 7.7E-18 T 13-10-2018 IPR006665 OmpA-like domain SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 SUPERFAMILY SSF103088 59 167 1.83E-29 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 PRINTS PR01021 OMPA domain signature 63 85 7.7E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 PRINTS PR01021 OMPA domain signature 110 126 7.7E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 PRINTS PR01021 OMPA domain signature 95 110 7.7E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 SJPD1_0631 268fe0071efe70e8e1bddd291d1605da 167 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 2 165 27.761 T 13-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 SJPD1_1502 953457bef1f5c7622637c40d53b024b5 156 SUPERFAMILY SSF52121 9 154 1.02E-56 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1502 953457bef1f5c7622637c40d53b024b5 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 15 151 7.2E-53 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1502 953457bef1f5c7622637c40d53b024b5 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 154 29.721 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1502 953457bef1f5c7622637c40d53b024b5 156 Gene3D G3DSA:3.40.50.960 1 155 5.1E-56 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1502 953457bef1f5c7622637c40d53b024b5 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 15 150 6.4E-55 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2469 eeda8a6c5b0cf3ef01e5ddbfd92ac314 101 PIRSF PIRSF020408 1 99 1.0E-32 T 13-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 SJPD1_2469 eeda8a6c5b0cf3ef01e5ddbfd92ac314 101 Pfam PF10087 Uncharacterized protein conserved in bacteria (DUF2325) 2 91 1.2E-16 T 13-10-2018 IPR016772 Uncharacterised conserved protein UCP020408 SJPD1_2354 614dc52f0ef4be8e9c50d25d47f3b922 137 Gene3D G3DSA:2.30.110.10 1 122 1.2E-10 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_2354 614dc52f0ef4be8e9c50d25d47f3b922 137 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 2 83 1.5E-7 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 SJPD1_2354 614dc52f0ef4be8e9c50d25d47f3b922 137 SUPERFAMILY SSF50475 4 129 1.07E-16 T 13-10-2018 SJPD1_2354 614dc52f0ef4be8e9c50d25d47f3b922 137 PIRSF PIRSF009554 2 137 9.0E-43 T 13-10-2018 IPR011194 Uncharacterised protein family UPF0306 SJPD1_0566 1a2288259de7a2602e72c8fe1cd9148d 170 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 4 144 1.1E-41 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_0566 1a2288259de7a2602e72c8fe1cd9148d 170 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 144 2.3E-46 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_0566 1a2288259de7a2602e72c8fe1cd9148d 170 PIRSF PIRSF004638 1 147 9.7E-42 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 Gene3D G3DSA:3.40.50.300 4 181 5.0E-46 T 13-10-2018 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 Hamap MF_00109 Shikimate kinase [aroK]. 6 173 22.399 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 Pfam PF01202 Shikimate kinase 15 171 1.1E-28 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 SUPERFAMILY SSF52540 5 174 6.25E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 PRINTS PR01100 Shikimate kinase family signature 33 46 9.5E-18 T 13-10-2018 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 PRINTS PR01100 Shikimate kinase family signature 61 69 9.5E-18 T 13-10-2018 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 PRINTS PR01100 Shikimate kinase family signature 80 89 9.5E-18 T 13-10-2018 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 PRINTS PR01100 Shikimate kinase family signature 97 114 9.5E-18 T 13-10-2018 SJPD1_2211 c8e32618e5e03d0cd08f760b013ca024 181 PRINTS PR01100 Shikimate kinase family signature 9 24 9.5E-18 T 13-10-2018 SJPD1_0544 7e74ded959c0154f8fe5a09c3dd3e44a 334 SUPERFAMILY SSF52402 16 213 3.09E-44 T 13-10-2018 SJPD1_0544 7e74ded959c0154f8fe5a09c3dd3e44a 334 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 20 194 3.4E-49 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SJPD1_0544 7e74ded959c0154f8fe5a09c3dd3e44a 334 Gene3D G3DSA:3.40.50.620 11 221 5.9E-48 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0544 7e74ded959c0154f8fe5a09c3dd3e44a 334 Pfam PF01171 PP-loop family 20 192 7.0E-51 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 SJPD1_0544 7e74ded959c0154f8fe5a09c3dd3e44a 334 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 8 274 19.749 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 SUPERFAMILY SSF143968 467 587 6.8E-11 T 13-10-2018 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 Gene3D G3DSA:3.40.1670.10 332 446 6.1E-23 T 13-10-2018 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 SUPERFAMILY SSF50475 1 317 1.65E-97 T 13-10-2018 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 1 446 2.6E-130 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 SUPERFAMILY SSF143968 318 447 2.75E-38 T 13-10-2018 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 469 548 1.0E-4 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 5 417 3.3E-123 T 13-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 SJPD1_1682 eb7ca7883083848532ef2d4c687f4a10 602 TIGRFAM TIGR03701 mena_SCO4490: menaquinone biosynthesis decarboxylase, SCO4490 family 4 440 1.6E-189 T 13-10-2018 IPR022390 4-hydroxybenzoate decarboxylase subunit C GO:0016831 SJPD1_0019 315205d3467372128a9fb78e4d5f0cd4 359 Gene3D G3DSA:1.20.120.30 261 356 8.8E-6 T 13-10-2018 SJPD1_0019 315205d3467372128a9fb78e4d5f0cd4 359 Gene3D G3DSA:1.10.287.950 61 260 5.8E-45 T 13-10-2018 SJPD1_0019 315205d3467372128a9fb78e4d5f0cd4 359 SMART SM00283 43 297 7.8E-25 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0019 315205d3467372128a9fb78e4d5f0cd4 359 SUPERFAMILY SSF58104 63 269 5.1E-48 T 13-10-2018 SJPD1_0019 315205d3467372128a9fb78e4d5f0cd4 359 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 113 247 3.4E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 1 556 44.167 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 SUPERFAMILY SSF143975 1 376 1.12E-131 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 464 475 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 Pfam PF00920 Dehydratase family 31 553 5.3E-214 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 14 556 6.6E-226 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 Gene3D G3DSA:3.50.30.80 377 527 1.9E-51 T 13-10-2018 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 SUPERFAMILY SSF52016 377 556 6.04E-57 T 13-10-2018 SJPD1_0074 a72ed8af60050a3e1f0d10a280e131eb 559 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 119 129 - T 13-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 SJPD1_2003 7aeced9781b6df15fab61b6ad6d6ebfc 514 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 354 510 5.0E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2003 7aeced9781b6df15fab61b6ad6d6ebfc 514 Pfam PF00990 Diguanylate cyclase, GGDEF domain 355 509 1.1E-38 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2003 7aeced9781b6df15fab61b6ad6d6ebfc 514 Gene3D G3DSA:3.30.70.270 339 511 1.5E-45 T 13-10-2018 SJPD1_2003 7aeced9781b6df15fab61b6ad6d6ebfc 514 SUPERFAMILY SSF55073 358 511 1.26E-42 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2003 7aeced9781b6df15fab61b6ad6d6ebfc 514 SMART SM00267 339 513 7.8E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0675 7889f96fac36c996f9b71d46b329df7d 269 Gene3D G3DSA:1.10.3210.10 1 267 1.2E-56 T 13-10-2018 SJPD1_0675 7889f96fac36c996f9b71d46b329df7d 269 SUPERFAMILY SSF109604 2 267 1.37E-47 T 13-10-2018 SJPD1_0675 7889f96fac36c996f9b71d46b329df7d 269 Pfam PF08668 HDOD domain 12 207 5.8E-38 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD SJPD1_2048 6b5310fef6d758fb3554aebcb7551701 259 SUPERFAMILY SSF89550 1 257 4.45E-52 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 SJPD1_2048 6b5310fef6d758fb3554aebcb7551701 259 TIGRFAM TIGR01856 hisJ_fam: histidinol phosphate phosphatase, HisJ family 3 230 2.9E-53 T 13-10-2018 IPR010140 Histidinol phosphate phosphatase, HisJ GO:0000105|GO:0004401 KEGG: 00340+3.1.3.15 SJPD1_2048 6b5310fef6d758fb3554aebcb7551701 259 Gene3D G3DSA:3.20.20.140 2 259 7.1E-77 T 13-10-2018 SJPD1_2048 6b5310fef6d758fb3554aebcb7551701 259 Pfam PF02811 PHP domain 4 188 6.0E-13 T 13-10-2018 IPR004013 PHP domain GO:0003824 SJPD1_0628 e9646d3574474002f02ccc95b32b0d23 130 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 128 3.2E-25 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 SJPD1_0628 e9646d3574474002f02ccc95b32b0d23 130 Gene3D G3DSA:3.30.420.270 57 126 4.8E-11 T 13-10-2018 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 Pfam PF00696 Amino acid kinase family 24 259 1.7E-45 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 Gene3D G3DSA:3.40.1160.10 2 283 1.8E-92 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 Hamap MF_00082 Acetylglutamate kinase [argB]. 23 276 47.377 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 PIRSF PIRSF000728 9 283 3.2E-104 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 PRINTS PR01469 Bacterial carbamate kinase signature 233 248 3.8E-5 T 13-10-2018 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 PRINTS PR01469 Bacterial carbamate kinase signature 183 198 3.8E-5 T 13-10-2018 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 PRINTS PR01469 Bacterial carbamate kinase signature 55 74 3.8E-5 T 13-10-2018 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 TIGRFAM TIGR00761 argB: acetylglutamate kinase 25 258 1.2E-77 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 SJPD1_1712 3638f3acf2d8e4ddf722b763aaee78f1 283 SUPERFAMILY SSF53633 4 282 1.44E-86 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_2009 314db016b9e913c3ca0980b3af1f22ed 411 Gene3D G3DSA:3.60.110.10 213 411 7.0E-9 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_2009 314db016b9e913c3ca0980b3af1f22ed 411 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 411 5.7E-55 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 SJPD1_2009 314db016b9e913c3ca0980b3af1f22ed 411 SUPERFAMILY SSF56317 189 411 8.37E-20 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_2009 314db016b9e913c3ca0980b3af1f22ed 411 Pfam PF00795 Carbon-nitrogen hydrolase 221 394 8.5E-8 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 SUPERFAMILY SSF55920 3 251 2.22E-71 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 68 81 1.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 194 206 1.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 160 172 1.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 PRINTS PR00599 Methionine aminopeptidase-1 signature 90 106 1.1E-21 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 166 184 - T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 Pfam PF00557 Metallopeptidase family M24 14 241 2.7E-45 T 13-10-2018 IPR000994 Peptidase M24 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 Gene3D G3DSA:3.90.230.10 1 252 1.3E-83 T 13-10-2018 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 Hamap MF_01974 Methionine aminopeptidase [map]. 3 252 34.686 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2419 11f621617ffe9488e3d0945b9db917b5 252 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 2.1E-89 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 SJPD1_2451 22d614c5d0b492af7776a813a31b66ea 126 Pfam PF00072 Response regulator receiver domain 10 120 7.9E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2451 22d614c5d0b492af7776a813a31b66ea 126 SUPERFAMILY SSF52172 7 125 1.08E-31 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2451 22d614c5d0b492af7776a813a31b66ea 126 SMART SM00448 7 121 4.1E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2451 22d614c5d0b492af7776a813a31b66ea 126 Gene3D G3DSA:3.40.50.2300 3 125 5.2E-31 T 13-10-2018 SJPD1_1636 b9f0a7308f91fc5053540d2f75b06a42 270 Pfam PF14253 Bacteriophage abortive infection AbiH 112 215 9.8E-11 T 13-10-2018 IPR025935 Bacteriophage abortive infection AbiH SJPD1_1636 b9f0a7308f91fc5053540d2f75b06a42 270 Pfam PF14253 Bacteriophage abortive infection AbiH 3 102 2.0E-17 T 13-10-2018 IPR025935 Bacteriophage abortive infection AbiH SJPD1_0949 495c4b2dbed34e1871c2c0505defce0f 397 Gene3D G3DSA:1.10.150.130 73 174 1.4E-12 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_0949 495c4b2dbed34e1871c2c0505defce0f 397 Gene3D G3DSA:1.10.443.10 184 387 7.9E-26 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_0949 495c4b2dbed34e1871c2c0505defce0f 397 Pfam PF00589 Phage integrase family 186 374 6.6E-12 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_0949 495c4b2dbed34e1871c2c0505defce0f 397 SUPERFAMILY SSF56349 76 377 9.71E-39 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 SMART SM00267 1 147 3.4E-5 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 SMART SM00052 159 389 8.6E-9 T 13-10-2018 IPR001633 EAL domain SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 SUPERFAMILY SSF141868 165 386 9.15E-33 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 SUPERFAMILY SSF55073 5 146 2.59E-13 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 Gene3D G3DSA:3.30.70.270 1 161 5.4E-15 T 13-10-2018 SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 Pfam PF00563 EAL domain 166 385 1.7E-30 T 13-10-2018 IPR001633 EAL domain SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 Gene3D G3DSA:3.20.20.450 162 389 1.6E-36 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2836 f4c2bc6b6f75b6b7c3b5e0548455cfa5 389 Pfam PF00990 Diguanylate cyclase, GGDEF domain 2 135 2.5E-12 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 6.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 6.1E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 Gene3D G3DSA:1.10.357.10 76 218 3.0E-22 T 13-10-2018 SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 SUPERFAMILY SSF46689 18 84 8.03E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 162 214 9.3E-5 T 13-10-2018 IPR039536 Transcriptional regulator TetR, C-terminal, Proteobacteria type SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 73 2.4E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1339 5d9ef6c22e9c064578031ab39c027a10 220 Gene3D G3DSA:1.10.10.60 14 74 1.8E-21 T 13-10-2018 SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 SUPERFAMILY SSF55021 5 77 2.71E-18 T 13-10-2018 SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 4 78 2.0E-26 T 13-10-2018 SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 Pfam PF01842 ACT domain 7 71 1.2E-12 T 13-10-2018 IPR002912 ACT domain SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 5 154 2.0E-40 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 Pfam PF10369 Small subunit of acetolactate synthase 85 154 2.5E-13 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 Gene3D G3DSA:3.30.70.1150 84 156 4.8E-10 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 SUPERFAMILY SSF55021 78 154 9.92E-17 T 13-10-2018 SJPD1_1613 88f7fa82b0689cdde19edf71884be2d8 156 Gene3D G3DSA:3.30.70.260 3 80 9.4E-28 T 13-10-2018 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 SUPERFAMILY SSF50129 70 235 2.04E-50 T 13-10-2018 IPR011032 GroES-like superfamily SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 SMART SM00829 75 407 1.7E-4 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 92 207 6.7E-26 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 Gene3D G3DSA:3.90.180.10 77 407 8.0E-127 T 13-10-2018 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 Pfam PF00107 Zinc-binding dehydrogenase 249 372 4.0E-15 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 SUPERFAMILY SSF51735 212 378 6.39E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 Gene3D G3DSA:3.40.50.720 223 379 8.0E-127 T 13-10-2018 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 242 270 - T 13-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 SJPD1_2105 9d0b8c6dbf4c83acb705ea43f6cd425b 411 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 126 140 - T 13-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 SJPD1_1144 ba70d4ab85ed106274f2e56243683658 170 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 103 1.1E-15 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 SJPD1_1144 ba70d4ab85ed106274f2e56243683658 170 Gene3D G3DSA:3.30.505.50 128 170 7.2E-8 T 13-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily SJPD1_1144 ba70d4ab85ed106274f2e56243683658 170 SUPERFAMILY SSF69754 1 105 1.96E-20 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like SJPD1_1144 ba70d4ab85ed106274f2e56243683658 170 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 116 169 9.2E-13 T 13-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal SJPD1_1144 ba70d4ab85ed106274f2e56243683658 170 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 97 3.9E-17 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 SJPD1_1144 ba70d4ab85ed106274f2e56243683658 170 Gene3D G3DSA:3.30.160.100 1 108 3.6E-19 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 Gene3D G3DSA:1.10.579.10 280 449 1.6E-58 T 13-10-2018 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 Pfam PF03441 FAD binding domain of DNA photolyase 261 448 3.4E-61 T 13-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 Gene3D G3DSA:3.40.50.620 1 115 9.0E-23 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 PRINTS PR00147 DNA photolyase signature 366 380 1.4E-20 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 PRINTS PR00147 DNA photolyase signature 129 145 1.4E-20 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 PRINTS PR00147 DNA photolyase signature 327 345 1.4E-20 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 PRINTS PR00147 DNA photolyase signature 307 323 1.4E-20 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 Pfam PF00875 DNA photolyase 4 146 3.8E-30 T 13-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 SUPERFAMILY SSF52425 4 157 4.19E-35 T 13-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 SJPD1_1352 6ee11585a805245b6b90fcfbaeba805f 449 SUPERFAMILY SSF48173 203 448 1.7E-84 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 SUPERFAMILY SSF46609 1 88 1.31E-33 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 3.0E-23 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 3.0E-23 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 PRINTS PR01703 Manganese superoxide dismutase signature 123 131 3.0E-23 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 PRINTS PR01703 Manganese superoxide dismutase signature 70 83 3.0E-23 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 PRINTS PR01703 Manganese superoxide dismutase signature 159 171 3.0E-23 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 94 194 1.4E-39 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 Gene3D G3DSA:2.40.500.20 88 197 4.5E-44 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 5 87 4.9E-29 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 PIRSF PIRSF000349 1 197 2.6E-80 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 SUPERFAMILY SSF54719 90 196 1.57E-44 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 161 168 - T 13-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_0489 c39a1fcaad5915ca68cbe475fb6dbc4c 197 Gene3D G3DSA:1.10.287.990 21 86 2.8E-23 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 SMART SM00849 36 225 3.7E-26 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 Gene3D G3DSA:3.40.50.360 254 407 2.8E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 Pfam PF00258 Flavodoxin 260 392 5.1E-8 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 Pfam PF00753 Metallo-beta-lactamase superfamily 36 172 2.4E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 SUPERFAMILY SSF52218 258 401 1.54E-31 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 SUPERFAMILY SSF56281 5 245 1.44E-43 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 PIRSF PIRSF005243 1 405 5.9E-122 T 13-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 SJPD1_1233 3b3f6ce0f5803e0ccdd6c10bfff06426 411 Gene3D G3DSA:3.60.15.10 2 253 5.6E-85 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 SUPERFAMILY SSF47323 318 463 1.7E-27 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 Gene3D G3DSA:1.20.120.640 308 463 3.0E-30 T 13-10-2018 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 SUPERFAMILY SSF52374 3 313 9.92E-82 T 13-10-2018 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 Gene3D G3DSA:3.40.50.620 1 307 6.3E-117 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 60 69 5.6E-27 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 189 207 5.6E-27 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 224 245 5.6E-27 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 24 35 5.6E-27 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 1 463 1.4E-158 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 Pfam PF09190 DALR domain 346 402 9.5E-5 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 315 1.3E-119 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 SJPD1_1451 c3fdf461e16a6347c683072214686a63 465 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 1 464 33.939 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 SJPD1_0817 1bb117f68dbf22ae5e402dc951b9d84f 200 SUPERFAMILY SSF52540 21 193 2.88E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0817 1bb117f68dbf22ae5e402dc951b9d84f 200 Gene3D G3DSA:3.40.50.300 1 196 1.5E-45 T 13-10-2018 SJPD1_0817 1bb117f68dbf22ae5e402dc951b9d84f 200 Pfam PF01926 50S ribosome-binding GTPase 26 153 2.0E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 SJPD1_0817 1bb117f68dbf22ae5e402dc951b9d84f 200 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 12 195 27.323 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 SJPD1_0817 1bb117f68dbf22ae5e402dc951b9d84f 200 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 9 190 1.2E-53 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 SJPD1_1991 3babd0d70943759de6b2c3a2c34f9753 267 SUPERFAMILY SSF53098 70 256 6.84E-47 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_1991 3babd0d70943759de6b2c3a2c34f9753 267 SMART SM00479 70 234 1.3E-36 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III SJPD1_1991 3babd0d70943759de6b2c3a2c34f9753 267 Gene3D G3DSA:1.20.5.140 207 235 1.7E-7 T 13-10-2018 SJPD1_1991 3babd0d70943759de6b2c3a2c34f9753 267 Gene3D G3DSA:3.30.420.10 63 206 3.0E-32 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_1991 3babd0d70943759de6b2c3a2c34f9753 267 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 72 254 3.6E-24 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_1991 3babd0d70943759de6b2c3a2c34f9753 267 Pfam PF00929 Exonuclease 73 225 1.6E-29 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 Gene3D G3DSA:1.10.10.10 133 228 1.9E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 SMART SM00448 12 123 3.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 Gene3D G3DSA:3.40.50.2300 5 132 9.1E-28 T 13-10-2018 SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 SUPERFAMILY SSF52172 10 175 5.41E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 224 2.3E-6 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 SMART SM00862 154 224 3.9E-5 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1496 3380998100d25bcebf06746c4d64110d 229 Pfam PF00072 Response regulator receiver domain 14 123 8.5E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 Pfam PF08448 PAS fold 275 355 4.7E-6 T 13-10-2018 IPR013656 PAS fold-4 SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 Gene3D G3DSA:2.10.70.100 213 258 7.2E-6 T 13-10-2018 SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 260 1.8E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 Gene3D G3DSA:3.30.450.20 138 210 1.2E-17 T 13-10-2018 SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 SUPERFAMILY SSF55785 147 258 1.24E-17 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 SMART SM00091 141 209 1.4E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 SMART SM00091 269 341 1.1 T 13-10-2018 IPR000014 PAS domain SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 Gene3D G3DSA:3.30.450.20 268 374 4.6E-7 T 13-10-2018 SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 SUPERFAMILY SSF55785 254 370 4.54E-9 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 Pfam PF08447 PAS fold 164 251 6.6E-15 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_2603 208c7f4e83c3bec7119d6a045bff29a4 379 Pfam PF13426 PAS domain 73 127 0.46 T 13-10-2018 IPR000014 PAS domain SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 Gene3D G3DSA:3.90.226.10 1 195 4.8E-79 T 13-10-2018 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 91 102 - T 13-10-2018 IPR018215 ClpP, Ser active site SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 Pfam PF00574 Clp protease 14 193 1.3E-84 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 PRINTS PR00127 Clp protease catalytic subunit P signature 20 35 4.1E-53 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 PRINTS PR00127 Clp protease catalytic subunit P signature 91 108 4.1E-53 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 PRINTS PR00127 Clp protease catalytic subunit P signature 112 131 4.1E-53 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 PRINTS PR00127 Clp protease catalytic subunit P signature 169 188 4.1E-53 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 PRINTS PR00127 Clp protease catalytic subunit P signature 60 80 4.1E-53 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 4 194 42.913 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 113 126 - T 13-10-2018 IPR033135 ClpP, histidine active site SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 SUPERFAMILY SSF52096 12 192 8.29E-70 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_2670 5fc6166d2a027eccce6c1fe92868a9e5 196 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 4 193 2.4E-104 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 253 322 6.5E-15 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 Gene3D G3DSA:3.40.1550.10 47 236 2.7E-59 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 PRINTS PR00955 Flagellar motor switch protein FliM signature 115 134 1.9E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 1.9E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 PRINTS PR00955 Flagellar motor switch protein FliM signature 90 106 1.9E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 1.9E-29 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 SUPERFAMILY SSF103039 45 229 3.49E-27 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 Gene3D G3DSA:2.30.330.10 238 331 1.5E-6 T 13-10-2018 IPR036429 SpoA-like superfamily SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 SUPERFAMILY SSF101801 252 327 4.97E-13 T 13-10-2018 IPR036429 SpoA-like superfamily SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 PIRSF PIRSF002888 1 332 2.1E-108 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 Pfam PF02154 Flagellar motor switch protein FliM 39 229 1.8E-75 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0347 a036d1c9d4f5f2065b9be99da7ba280e 353 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 321 4.2E-102 T 13-10-2018 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 SJPD1_0230 fdad9dd3308d5defc024ec165616a3ab 214 SUPERFAMILY SSF69572 2 213 8.24E-40 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 SJPD1_0230 fdad9dd3308d5defc024ec165616a3ab 214 Gene3D G3DSA:3.40.50.720 1 214 4.4E-50 T 13-10-2018 SJPD1_0230 fdad9dd3308d5defc024ec165616a3ab 214 Pfam PF00899 ThiF family 6 129 8.8E-25 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 Gene3D G3DSA:3.90.1150.10 25 406 1.2E-175 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 SUPERFAMILY SSF53383 18 429 4.78E-170 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 Gene3D G3DSA:3.40.640.10 51 301 1.2E-175 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 235 251 - T 13-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 Pfam PF00464 Serine hydroxymethyltransferase 23 397 5.0E-164 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 PIRSF PIRSF000412 5 432 1.4E-166 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_1102 3a4854338e200ae98f5abad0902f2b2a 433 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 21 429 49.867 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 Gene3D G3DSA:1.10.490.10 1 154 1.3E-30 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 Pfam PF00563 EAL domain 162 385 3.3E-53 T 13-10-2018 IPR001633 EAL domain SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 Pfam PF11563 Protoglobin 4 148 1.4E-23 T 13-10-2018 SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 SUPERFAMILY SSF141868 167 393 9.29E-57 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 SMART SM00052 152 392 7.2E-43 T 13-10-2018 IPR001633 EAL domain SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 Gene3D G3DSA:3.20.20.450 155 398 9.9E-58 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1009 f882fd0a41f3d1afd5c709eeb2eee765 403 SUPERFAMILY SSF46458 3 141 2.3E-29 T 13-10-2018 IPR009050 Globin-like superfamily SJPD1_2330 70ad50b1d6bc0657f944f898c63de5f2 191 Pfam PF14345 GDYXXLXY protein 19 177 2.9E-20 T 13-10-2018 IPR025833 GDYXXLXY protein SJPD1_0581 37b6fd793edf181fe2198a9c1f6d31d3 1045 Pfam PF01578 Cytochrome C assembly protein 800 1007 1.7E-39 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 SJPD1_0581 37b6fd793edf181fe2198a9c1f6d31d3 1045 Pfam PF05140 ResB-like family 345 418 1.9E-11 T 13-10-2018 IPR007816 ResB-like domain SJPD1_0243 673718ccb224cbae49ef9993deb0a530 195 Hamap MF_00493 Transaldolase [tal]. 1 195 54.2 T 13-10-2018 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 SJPD1_0243 673718ccb224cbae49ef9993deb0a530 195 SUPERFAMILY SSF51569 6 169 1.83E-41 T 13-10-2018 SJPD1_0243 673718ccb224cbae49ef9993deb0a530 195 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 10 173 3.0E-48 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 SJPD1_0243 673718ccb224cbae49ef9993deb0a530 195 Gene3D G3DSA:3.20.20.70 4 188 2.7E-59 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 210 229 9.4E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 28 44 9.4E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 105 117 9.4E-17 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 SUPERFAMILY SSF51306 27 264 3.92E-56 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 Pfam PF00717 Peptidase S24-like 35 125 1.5E-15 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 Gene3D G3DSA:2.170.230.10 116 209 5.5E-48 T 13-10-2018 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 17 250 1.0E-38 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 ProSitePatterns PS00761 Signal peptidases I signature 3. 215 228 - T 13-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 SJPD1_1134 225e95c468bde9638e7e75d721c17832 275 Gene3D G3DSA:2.10.109.10 28 250 5.5E-48 T 13-10-2018 SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 SUPERFAMILY SSF52172 1 154 4.27E-35 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 Gene3D G3DSA:3.40.50.2300 1 129 2.3E-33 T 13-10-2018 SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 SMART SM00448 1 112 6.8E-36 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 216 8.1E-12 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 Gene3D G3DSA:1.10.10.10 130 224 1.3E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 Pfam PF00072 Response regulator receiver domain 3 112 1.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 SMART SM00862 145 216 3.6E-10 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1953 27bd5a491871cbe3b88cbe7cfb0b33c9 225 SUPERFAMILY SSF46894 129 216 3.68E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1737 f29603ea42fd0aa9c280fc5e7d5657ff 206 SUPERFAMILY SSF52540 34 115 1.98E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1737 f29603ea42fd0aa9c280fc5e7d5657ff 206 Pfam PF13177 DNA polymerase III, delta subunit 39 110 3.6E-13 T 13-10-2018 SJPD1_1737 f29603ea42fd0aa9c280fc5e7d5657ff 206 Gene3D G3DSA:3.40.50.300 2 111 8.4E-17 T 13-10-2018 SJPD1_0438 569e7039967bb28f19a4e01d74a9d265 160 Pfam PF00466 Ribosomal protein L10 2 96 1.6E-18 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 SJPD1_0438 569e7039967bb28f19a4e01d74a9d265 160 Gene3D G3DSA:3.30.70.1730 1 129 3.5E-32 T 13-10-2018 SJPD1_0438 569e7039967bb28f19a4e01d74a9d265 160 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 156 21.965 T 13-10-2018 IPR022973 Ribosomal protein L10 SJPD1_0438 569e7039967bb28f19a4e01d74a9d265 160 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 13-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0438 569e7039967bb28f19a4e01d74a9d265 160 SUPERFAMILY SSF160369 2 155 3.79E-39 T 13-10-2018 SJPD1_1330 f046792d273ba58a6e1fa435efacdc40 403 TIGRFAM TIGR02358 thia_cytX: putative hydroxymethylpyrimidine transporter CytX 13 390 1.4E-118 T 13-10-2018 IPR012732 Hydroxymethylpyrimidine transporter CytX SJPD1_1330 f046792d273ba58a6e1fa435efacdc40 403 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 4 344 8.6E-31 T 13-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 SJPD1_1330 f046792d273ba58a6e1fa435efacdc40 403 Gene3D G3DSA:1.10.4160.10 1 402 6.8E-46 T 13-10-2018 IPR038271 Purine-cytosine permease superfamily SJPD1_0965 e304f5cce3a35f43d924aa55b4b629aa 85 Gene3D G3DSA:1.10.260.40 9 83 1.2E-11 T 13-10-2018 SJPD1_0965 e304f5cce3a35f43d924aa55b4b629aa 85 Pfam PF01381 Helix-turn-helix 24 81 1.1E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0965 e304f5cce3a35f43d924aa55b4b629aa 85 SUPERFAMILY SSF47413 17 83 1.1E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0965 e304f5cce3a35f43d924aa55b4b629aa 85 SMART SM00530 23 81 3.7E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0009 85611e2add4df213d81d7d090f19d07b 392 Pfam PF07690 Major Facilitator Superfamily 16 348 9.2E-39 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_0009 85611e2add4df213d81d7d090f19d07b 392 SUPERFAMILY SSF103473 8 383 7.46E-55 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_0009 85611e2add4df213d81d7d090f19d07b 392 ProSitePatterns PS00216 Sugar transport proteins signature 1. 64 80 - T 13-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 SJPD1_0009 85611e2add4df213d81d7d090f19d07b 392 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 375 9.4E-83 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 SJPD1_0009 85611e2add4df213d81d7d090f19d07b 392 Gene3D G3DSA:1.20.1720.10 10 381 1.3E-86 T 13-10-2018 SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 ProSitePatterns PS00893 Nudix box signature. 43 64 - T 13-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 SUPERFAMILY SSF55811 5 150 1.11E-25 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 Pfam PF00293 NUDIX domain 7 144 3.9E-22 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 155 30.31 T 13-10-2018 IPR022927 RNA pyrophosphohydrolase RppH SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 Gene3D G3DSA:3.90.79.10 1 154 8.3E-39 T 13-10-2018 SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 PRINTS PR00502 NUDIX hydrolase family signature 52 67 1.7E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 SJPD1_1740 5da3d263bfdf89e78fd7c1c9cedcd848 156 PRINTS PR00502 NUDIX hydrolase family signature 38 52 1.7E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 SJPD1_0944 31d9ec49891fbf02b7181d09fd446517 285 SUPERFAMILY SSF52540 29 156 7.19E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 212 253 - T 13-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 SMART SM00342 175 257 7.6E-30 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 SUPERFAMILY SSF46689 159 208 7.17E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 SUPERFAMILY SSF46689 212 259 3.08E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 SUPERFAMILY SSF51215 20 124 3.27E-10 T 13-10-2018 IPR037923 Transcription regulator HTH-like SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 Gene3D G3DSA:1.10.10.60 154 209 2.6E-17 T 13-10-2018 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 226 241 7.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 241 257 7.2E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 Pfam PF12833 Helix-turn-helix domain 181 258 2.0E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 Gene3D G3DSA:1.10.10.60 210 261 3.0E-12 T 13-10-2018 SJPD1_0036 49e1849f5451bdaf73bf044abe7796fa 266 Pfam PF02311 AraC-like ligand binding domain 18 135 1.2E-8 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 SJPD1_2656 ea5cc030820c3cca4c0ba0501ddc2df7 140 Pfam PF09335 SNARE associated Golgi protein 25 134 2.1E-16 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_0633 b28c0f75e3230480af3c5afdd79e3200 210 SUPERFAMILY SSF54534 3 141 1.28E-33 T 13-10-2018 SJPD1_0633 b28c0f75e3230480af3c5afdd79e3200 210 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 82 4.4E-13 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain SJPD1_0633 b28c0f75e3230480af3c5afdd79e3200 210 Gene3D G3DSA:2.40.10.330 74 125 7.1E-27 T 13-10-2018 SJPD1_1607 40ddda3861e2e56c7b6a2af484862b7f 259 Gene3D G3DSA:3.20.20.70 1 259 5.3E-96 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1607 40ddda3861e2e56c7b6a2af484862b7f 259 SUPERFAMILY SSF63892 2 258 2.35E-82 T 13-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 SJPD1_1607 40ddda3861e2e56c7b6a2af484862b7f 259 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 3 258 3.9E-87 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 SJPD1_1607 40ddda3861e2e56c7b6a2af484862b7f 259 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 3 257 7.1E-91 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 SJPD1_1607 40ddda3861e2e56c7b6a2af484862b7f 259 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 259 94.581 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 SJPD1_1798 c71e88978b913b7c9fb28b2bd7dba744 156 Pfam PF13664 Domain of unknown function (DUF4149) 11 114 9.5E-13 T 13-10-2018 IPR025423 Domain of unknown function DUF4149 SJPD1_2411 ad65681dcc754880111e84424bfd9ba3 187 SUPERFAMILY SSF48452 7 179 2.73E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1839 971d1d8b95ba2f6ca54c44ba6eb3a743 630 Pfam PF00501 AMP-binding enzyme 16 497 6.6E-96 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_1839 971d1d8b95ba2f6ca54c44ba6eb3a743 630 ProSitePatterns PS00455 Putative AMP-binding domain signature. 184 195 - T 13-10-2018 IPR020845 AMP-binding, conserved site SJPD1_1839 971d1d8b95ba2f6ca54c44ba6eb3a743 630 Gene3D G3DSA:3.40.50.12780 333 493 2.9E-39 T 13-10-2018 SJPD1_1839 971d1d8b95ba2f6ca54c44ba6eb3a743 630 Gene3D G3DSA:3.40.50.12780 1 323 3.4E-51 T 13-10-2018 SJPD1_1839 971d1d8b95ba2f6ca54c44ba6eb3a743 630 SUPERFAMILY SSF56801 5 627 4.84E-108 T 13-10-2018 SJPD1_0533 ec971fc1b7a8d9d10d941d3cd9c4fb90 237 SUPERFAMILY SSF51351 2 231 9.03E-62 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0533 ec971fc1b7a8d9d10d941d3cd9c4fb90 237 Gene3D G3DSA:3.20.20.70 1 232 3.4E-67 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0533 ec971fc1b7a8d9d10d941d3cd9c4fb90 237 Pfam PF00121 Triosephosphate isomerase 2 229 7.0E-62 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_0533 ec971fc1b7a8d9d10d941d3cd9c4fb90 237 ProSitePatterns PS00171 Triosephosphate isomerase active site. 157 167 - T 13-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_2802 56b556185f150338a0093ad004747bfd 668 SUPERFAMILY SSF56496 383 446 4.84E-5 T 13-10-2018 IPR036056 Fibrinogen-like, C-terminal SJPD1_2802 56b556185f150338a0093ad004747bfd 668 Pfam PF01973 Protein of unknown function DUF115 274 432 4.6E-28 T 13-10-2018 IPR002826 6-hydroxymethylpterin diphosphokinase MptE-like SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 39 345 1.4E-129 T 13-10-2018 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77 SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 Gene3D G3DSA:3.20.20.70 1 344 1.2E-52 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 Hamap MF_00992 Cyclic dehypoxanthine futalosine synthase [mqnC]. 1 348 53.195 T 13-10-2018 IPR022431 Cyclic dehypoxanthine futalosine synthase GO:0009234 KEGG: 00130+1.21.98.1|MetaCyc: PWY-7371|MetaCyc: PWY-7374 SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 PIRSF PIRSF004762 1 347 1.4E-106 T 13-10-2018 SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 Pfam PF04055 Radical SAM superfamily 46 216 6.1E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 TIGRFAM TIGR03699 menaquin_MqnC: dehypoxanthine futalosine cyclase 2 345 2.7E-154 T 13-10-2018 IPR022431 Cyclic dehypoxanthine futalosine synthase GO:0009234 KEGG: 00130+1.21.98.1|MetaCyc: PWY-7371|MetaCyc: PWY-7374 SJPD1_1140 e235dc7e7e038083d2f67797618c58ac 349 SUPERFAMILY SSF102114 3 335 6.54E-51 T 13-10-2018 SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 Gene3D G3DSA:3.20.20.450 225 469 1.6E-48 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 SMART SM00267 58 230 0.002 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 Pfam PF00990 Diguanylate cyclase, GGDEF domain 80 205 1.4E-11 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 Pfam PF00563 EAL domain 231 460 1.2E-48 T 13-10-2018 IPR001633 EAL domain SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 SMART SM00052 223 465 4.0E-28 T 13-10-2018 IPR001633 EAL domain SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 Gene3D G3DSA:3.30.70.270 69 219 6.0E-12 T 13-10-2018 SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 SUPERFAMILY SSF141868 231 466 1.7E-47 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0004 225531ae7601b7fdd861bd5e4e0e65b9 471 SUPERFAMILY SSF55073 80 201 9.42E-10 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1861 c527be42742cf8b4d8729affa03ed963 95 Gene3D G3DSA:3.30.460.10 3 94 3.3E-19 T 13-10-2018 SJPD1_1861 c527be42742cf8b4d8729affa03ed963 95 SUPERFAMILY SSF81301 1 93 2.8E-18 T 13-10-2018 SJPD1_1861 c527be42742cf8b4d8729affa03ed963 95 Pfam PF01909 Nucleotidyltransferase domain 12 90 4.3E-12 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 Pfam PF00563 EAL domain 505 739 8.5E-67 T 13-10-2018 IPR001633 EAL domain SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 Pfam PF00990 Diguanylate cyclase, GGDEF domain 331 484 1.7E-38 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 SUPERFAMILY SSF55073 336 487 3.22E-38 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 328 485 3.6E-34 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 SMART SM00052 499 744 1.2E-103 T 13-10-2018 IPR001633 EAL domain SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 Gene3D G3DSA:3.30.450.20 33 173 6.6E-7 T 13-10-2018 SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 SMART SM00267 320 489 2.0E-42 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 SUPERFAMILY SSF141868 504 752 6.54E-80 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 Gene3D G3DSA:3.30.70.270 325 501 6.2E-47 T 13-10-2018 SJPD1_1259 ce30fdd8f6b549b749e6279936d98588 758 Gene3D G3DSA:3.20.20.450 502 756 3.6E-84 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_1544 08d63ad12874c130f6e88a41d3bde2ff 201 Pfam PF13241 Putative NAD(P)-binding 7 115 6.0E-25 T 13-10-2018 SJPD1_1544 08d63ad12874c130f6e88a41d3bde2ff 201 Gene3D G3DSA:3.40.50.720 1 112 3.5E-27 T 13-10-2018 SJPD1_1544 08d63ad12874c130f6e88a41d3bde2ff 201 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 153 2.7E-33 T 13-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_1544 08d63ad12874c130f6e88a41d3bde2ff 201 Gene3D G3DSA:3.30.160.110 113 148 4.4E-9 T 13-10-2018 SJPD1_1544 08d63ad12874c130f6e88a41d3bde2ff 201 SUPERFAMILY SSF75615 108 184 1.07E-12 T 13-10-2018 SJPD1_1544 08d63ad12874c130f6e88a41d3bde2ff 201 SUPERFAMILY SSF51735 1 113 6.97E-21 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2795 fdde4df33cad4d8f05da8cddec0e37d0 287 Gene3D G3DSA:3.40.50.2000 143 279 2.4E-36 T 13-10-2018 SJPD1_2795 fdde4df33cad4d8f05da8cddec0e37d0 287 Gene3D G3DSA:3.40.50.11190 1 142 9.6E-44 T 13-10-2018 SJPD1_2795 fdde4df33cad4d8f05da8cddec0e37d0 287 TIGRFAM TIGR03590 PseG: UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase 1 260 6.2E-71 T 13-10-2018 IPR020023 UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase SJPD1_2605 e7aedc934785d4a58e7392d3ecd0371a 410 SUPERFAMILY SSF55874 273 402 1.74E-13 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2605 e7aedc934785d4a58e7392d3ecd0371a 410 Gene3D G3DSA:3.30.565.10 269 410 4.3E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2605 e7aedc934785d4a58e7392d3ecd0371a 410 SUPERFAMILY SSF47384 195 270 1.96E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2605 e7aedc934785d4a58e7392d3ecd0371a 410 SUPERFAMILY SSF158472 162 207 2.88E-5 T 13-10-2018 SJPD1_2605 e7aedc934785d4a58e7392d3ecd0371a 410 Gene3D G3DSA:1.10.287.130 158 268 3.7E-16 T 13-10-2018 SJPD1_2605 e7aedc934785d4a58e7392d3ecd0371a 410 SMART SM00388 212 270 1.4E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 SMART SM00304 382 436 6.0E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 Gene3D G3DSA:3.30.450.20 73 237 6.3E-52 T 13-10-2018 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 SMART SM00283 437 712 1.8E-47 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 520 646 5.8E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 Gene3D G3DSA:1.10.287.950 381 713 3.3E-62 T 13-10-2018 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 578 607 9.6E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 377 9.6E-5 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 SUPERFAMILY SSF58104 404 712 4.19E-59 T 13-10-2018 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 Pfam PF02743 Cache domain 53 332 6.6E-22 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_1279 321af64ff6beb4725ae423414ba443b8 713 Gene3D G3DSA:3.30.450.20 64 341 6.3E-52 T 13-10-2018 SJPD1_2153 4801d3f781ad2afb824b7dca93442166 847 Gene3D G3DSA:3.20.20.80 101 304 2.8E-13 T 13-10-2018 SJPD1_2153 4801d3f781ad2afb824b7dca93442166 847 SUPERFAMILY SSF51445 53 296 1.7E-41 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily SJPD1_2153 4801d3f781ad2afb824b7dca93442166 847 SUPERFAMILY SSF53448 411 676 7.74E-42 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2153 4801d3f781ad2afb824b7dca93442166 847 Pfam PF13641 Glycosyltransferase like family 2 414 642 9.0E-28 T 13-10-2018 SJPD1_2153 4801d3f781ad2afb824b7dca93442166 847 Gene3D G3DSA:3.90.550.10 404 626 9.3E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 5.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 5.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 5.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 5.6E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 SMART SM00347 24 124 3.2E-9 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 Gene3D G3DSA:1.10.287.100 96 143 1.3E-5 T 13-10-2018 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 Pfam PF01047 MarR family 32 88 3.0E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 SUPERFAMILY SSF46785 6 141 5.13E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1309 4fad6534eadced3c88c27e8ae046b79e 143 Gene3D G3DSA:1.10.10.10 32 94 2.5E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 SMART SM00825 Beta-ketoacyl synthase 4 414 1.1E-12 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 Gene3D G3DSA:3.40.47.10 1 254 4.9E-79 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 SUPERFAMILY SSF53901 1 251 2.31E-69 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 SUPERFAMILY SSF53901 214 410 6.12E-60 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 410 2.0E-166 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 367 1.1E-27 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 Gene3D G3DSA:3.40.47.10 260 413 3.2E-42 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 246 8.8E-52 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal SJPD1_0662 031dc5e988b3f8693d14210b803af25a 414 PIRSF PIRSF000447 1 413 2.7E-158 T 13-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 SJPD1_2527 6ef60796623a0d4f92c088d933f0947b 261 SMART SM00062 25 248 8.5E-66 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_2527 6ef60796623a0d4f92c088d933f0947b 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 246 1.7E-62 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_2527 6ef60796623a0d4f92c088d933f0947b 261 SUPERFAMILY SSF53850 6 246 3.46E-66 T 13-10-2018 SJPD1_2527 6ef60796623a0d4f92c088d933f0947b 261 Gene3D G3DSA:3.40.190.10 26 239 1.4E-67 T 13-10-2018 SJPD1_2527 6ef60796623a0d4f92c088d933f0947b 261 SMART SM00079 25 247 3.2E-4 T 13-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 SJPD1_2527 6ef60796623a0d4f92c088d933f0947b 261 Gene3D G3DSA:3.40.190.10 113 206 1.4E-67 T 13-10-2018 SJPD1_2220 3f56ed831c90e13d996933f644b9e3a2 121 Pfam PF00072 Response regulator receiver domain 4 116 4.9E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2220 3f56ed831c90e13d996933f644b9e3a2 121 SMART SM00448 1 116 1.6E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2220 3f56ed831c90e13d996933f644b9e3a2 121 Gene3D G3DSA:3.40.50.2300 1 120 3.1E-37 T 13-10-2018 SJPD1_2220 3f56ed831c90e13d996933f644b9e3a2 121 SUPERFAMILY SSF52172 2 120 7.97E-36 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 246 1.8E-96 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 7.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 7.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 7.5E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 2.6E-63 T 13-10-2018 SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.4E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.4E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.4E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.4E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 2.4E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.4E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 191 4.2E-5 T 13-10-2018 SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 SUPERFAMILY SSF51735 5 247 9.46E-80 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2280 7c63d99c09b2452c65033e3b6572a2b4 247 Gene3D G3DSA:3.40.50.720 1 247 2.4E-80 T 13-10-2018 SJPD1_0314 8afb2d112d19ca0264524d9adf729a3b 282 SUPERFAMILY SSF103190 54 182 3.18E-6 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_0314 8afb2d112d19ca0264524d9adf729a3b 282 Pfam PF14827 Double sensory domain of two-component sensor kinase 36 269 9.0E-21 T 13-10-2018 IPR029150 Double Cache domain 3 SJPD1_0658 e630ba76e6546b16e7dfe0747cea6735 194 SUPERFAMILY SSF51161 4 159 3.33E-28 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_0658 e630ba76e6546b16e7dfe0747cea6735 194 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 42 9.6E-6 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_0658 e630ba76e6546b16e7dfe0747cea6735 194 Gene3D G3DSA:2.160.10.10 1 163 1.1E-40 T 13-10-2018 SJPD1_1291 f4ffe6cc562d9a7995795a7bcf230e70 114 Pfam PF06518 Protein of unknown function (DUF1104) 19 64 4.8E-7 T 13-10-2018 IPR009488 Protein of unknown function DUF1104 SJPD1_1291 f4ffe6cc562d9a7995795a7bcf230e70 114 Gene3D G3DSA:1.20.120.1430 11 77 1.3E-8 T 13-10-2018 SJPD1_0294 8ff54ca41b32ca9303a4890f752ec42d 338 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 130 3.7E-15 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain SJPD1_0294 8ff54ca41b32ca9303a4890f752ec42d 338 SUPERFAMILY SSF53927 6 172 3.24E-34 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 SJPD1_0294 8ff54ca41b32ca9303a4890f752ec42d 338 Gene3D G3DSA:3.40.430.10 173 295 4.1E-14 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 SJPD1_0294 8ff54ca41b32ca9303a4890f752ec42d 338 Gene3D G3DSA:3.40.140.10 3 172 1.3E-29 T 13-10-2018 SJPD1_0294 8ff54ca41b32ca9303a4890f752ec42d 338 SUPERFAMILY SSF53597 177 335 2.29E-22 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 SJPD1_0294 8ff54ca41b32ca9303a4890f752ec42d 338 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 10 269 5.6E-67 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 SJPD1_1109 b8726dfa7c5c5c47fd77d8ee8927fa7a 208 Pfam PF01810 LysE type translocator 17 206 7.3E-41 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1109 b8726dfa7c5c5c47fd77d8ee8927fa7a 208 PIRSF PIRSF006324 1 208 8.4E-56 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1583 3afa309cbf5bba7ecdd9aeb97a6db39b 403 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 16 304 1.5E-80 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme SJPD1_1583 3afa309cbf5bba7ecdd9aeb97a6db39b 403 Gene3D G3DSA:3.40.50.1100 50 146 2.2E-119 T 13-10-2018 SJPD1_1583 3afa309cbf5bba7ecdd9aeb97a6db39b 403 Gene3D G3DSA:3.40.50.1100 7 309 2.2E-119 T 13-10-2018 SJPD1_1583 3afa309cbf5bba7ecdd9aeb97a6db39b 403 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 SJPD1_1583 3afa309cbf5bba7ecdd9aeb97a6db39b 403 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 21 400 5.6E-159 T 13-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 SJPD1_1583 3afa309cbf5bba7ecdd9aeb97a6db39b 403 SUPERFAMILY SSF53686 4 354 2.75E-97 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 Gene3D G3DSA:3.40.1550.10 2 160 6.1E-8 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 SUPERFAMILY SSF101801 204 285 1.7E-20 T 13-10-2018 IPR036429 SpoA-like superfamily SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 204 279 6.1E-26 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 207 276 4.1E-20 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 PRINTS PR00956 Flagellar motor switch protein FliN signature 240 253 7.5E-18 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 PRINTS PR00956 Flagellar motor switch protein FliN signature 224 240 7.5E-18 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 PRINTS PR00956 Flagellar motor switch protein FliN signature 253 268 7.5E-18 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 PRINTS PR00956 Flagellar motor switch protein FliN signature 207 223 7.5E-18 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 SUPERFAMILY SSF103039 48 115 1.23E-9 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0348 34a215f5bef0761e2ab9800094d8eeda 287 Gene3D G3DSA:2.30.330.10 195 287 1.4E-26 T 13-10-2018 IPR036429 SpoA-like superfamily SJPD1_0037 acd130d742c3fede1d62829c987b666c 298 Pfam PF00892 EamA-like transporter family 9 138 1.1E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0037 acd130d742c3fede1d62829c987b666c 298 Pfam PF00892 EamA-like transporter family 155 285 1.9E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0037 acd130d742c3fede1d62829c987b666c 298 SUPERFAMILY SSF103481 40 139 6.67E-7 T 13-10-2018 SJPD1_0037 acd130d742c3fede1d62829c987b666c 298 SUPERFAMILY SSF103481 204 286 2.88E-11 T 13-10-2018 SJPD1_1652 79e20301319ff23bfa7769d0eefa2f53 261 SUPERFAMILY SSF143865 8 192 1.96E-7 T 13-10-2018 SJPD1_1652 79e20301319ff23bfa7769d0eefa2f53 261 Gene3D G3DSA:1.20.58.340 183 261 9.7E-14 T 13-10-2018 SJPD1_1652 79e20301319ff23bfa7769d0eefa2f53 261 SUPERFAMILY SSF144083 195 250 2.22E-12 T 13-10-2018 SJPD1_1652 79e20301319ff23bfa7769d0eefa2f53 261 Pfam PF01544 CorA-like Mg2+ transporter protein 79 258 5.3E-29 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 SJPD1_1652 79e20301319ff23bfa7769d0eefa2f53 261 Gene3D G3DSA:1.20.58.340 77 176 1.3E-5 T 13-10-2018 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 SUPERFAMILY SSF53613 10 315 1.71E-56 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 Gene3D G3DSA:3.40.1190.20 3 311 1.7E-103 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 8 312 8.9E-116 T 13-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 Pfam PF00294 pfkB family carbohydrate kinase 10 304 1.6E-46 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 Pfam PF01467 Cytidylyltransferase-like 347 458 1.2E-14 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 344 406 6.4E-14 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 Hamap MF_01603 Bifunctional protein HldE [hldE]. 2 472 40.657 T 13-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 340 471 5.0E-56 T 13-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 SUPERFAMILY SSF52374 343 468 4.44E-24 T 13-10-2018 SJPD1_2252 2260c68ca74517cfa0cf3307174d5d8d 472 Gene3D G3DSA:3.40.50.620 320 472 2.6E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 Gene3D G3DSA:1.10.287.130 179 246 1.4E-7 T 13-10-2018 SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 SMART SM00388 187 252 9.2E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 SUPERFAMILY SSF47384 174 246 4.51E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 Gene3D G3DSA:3.30.565.10 247 395 2.1E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 296 393 3.0E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 Pfam PF00512 His Kinase A (phospho-acceptor) domain 188 245 8.1E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 SUPERFAMILY SSF55874 251 394 2.36E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0132 6caec6c02816e4d6429711386fd5cfee 395 SMART SM00387 295 385 3.9E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 Pfam PF10415 Fumarase C C-terminus 407 460 3.6E-22 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 Gene3D G3DSA:1.10.40.30 406 463 1.8E-24 T 13-10-2018 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 Gene3D G3DSA:1.20.200.10 138 405 5.4E-114 T 13-10-2018 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 SUPERFAMILY SSF48557 2 459 1.73E-152 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 ProSitePatterns PS00163 Fumarate lyases signature. 316 325 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 89.266 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 459 9.3E-239 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 Gene3D G3DSA:1.10.275.10 4 137 1.5E-60 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 Pfam PF00206 Lyase 11 341 2.2E-115 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 1.4E-32 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 1.4E-32 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 1.4E-32 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_1431 ce3996b0396010ef8d6d93d1e035e33a 463 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 1.4E-32 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_2883 cb8ed7dbf4b15a4f814ab2208736f562 122 Gene3D G3DSA:3.40.50.720 31 109 1.9E-23 T 13-10-2018 SJPD1_2883 cb8ed7dbf4b15a4f814ab2208736f562 122 SUPERFAMILY SSF51735 7 121 6.82E-13 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2883 cb8ed7dbf4b15a4f814ab2208736f562 122 Gene3D G3DSA:3.90.25.10 8 116 1.9E-23 T 13-10-2018 SJPD1_1761 48a8dd9133c2575c756f6d52a983ab32 454 Pfam PF06368 Methylaspartate mutase E chain (MutE) 42 434 2.1E-119 T 13-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 SJPD1_1761 48a8dd9133c2575c756f6d52a983ab32 454 SUPERFAMILY SSF51703 3 453 2.2E-156 T 13-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 SJPD1_1761 48a8dd9133c2575c756f6d52a983ab32 454 Gene3D G3DSA:3.20.20.240 2 400 9.2E-130 T 13-10-2018 SJPD1_1761 48a8dd9133c2575c756f6d52a983ab32 454 PIRSF PIRSF001495 2 451 1.2E-118 T 13-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 SJPD1_2191 bb837661a4089bc7bfa70448347270ca 118 Gene3D G3DSA:1.20.120.50 5 118 9.8E-15 T 13-10-2018 IPR035938 Hemerythrin-like superfamily SJPD1_2191 bb837661a4089bc7bfa70448347270ca 118 ProSitePatterns PS00550 Hemerythrin family signature. 42 65 - T 13-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 SJPD1_2191 bb837661a4089bc7bfa70448347270ca 118 SUPERFAMILY SSF47188 2 111 1.7E-16 T 13-10-2018 IPR035938 Hemerythrin-like superfamily SJPD1_1413 d03bad8c4b7793ab4461d825900df0c7 374 Gene3D G3DSA:3.40.50.11740 62 300 2.1E-110 T 13-10-2018 SJPD1_1413 d03bad8c4b7793ab4461d825900df0c7 374 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 5 367 6.2E-153 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 SJPD1_1413 d03bad8c4b7793ab4461d825900df0c7 374 Gene3D G3DSA:3.40.50.11750 24 259 2.1E-110 T 13-10-2018 SJPD1_1413 d03bad8c4b7793ab4461d825900df0c7 374 Gene3D G3DSA:1.10.10.2140 316 368 4.2E-25 T 13-10-2018 SJPD1_1413 d03bad8c4b7793ab4461d825900df0c7 374 Pfam PF01924 Hydrogenase formation hypA family 16 365 1.0E-153 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 SJPD1_1413 d03bad8c4b7793ab4461d825900df0c7 374 PIRSF PIRSF005622 4 370 4.5E-164 T 13-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 218 3.7E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 Gene3D G3DSA:3.40.50.2300 1 128 5.9E-33 T 13-10-2018 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 SMART SM00448 1 112 7.6E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 Pfam PF00072 Response regulator receiver domain 4 112 9.3E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 SUPERFAMILY SSF46894 131 218 3.4E-15 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 SMART SM00862 148 218 4.0E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 SUPERFAMILY SSF52172 1 125 4.55E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2517 55d90b6b3c52c3aba91e71024b56c2ad 223 Gene3D G3DSA:1.10.10.10 129 222 1.9E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 170 1.9E-30 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 7 175 17.773 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 Pfam PF01782 RimM N-terminal domain 9 85 9.3E-12 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 SUPERFAMILY SSF50346 98 167 1.12E-10 T 13-10-2018 IPR011033 PRC-barrel-like superfamily SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 Gene3D G3DSA:2.40.30.60 7 87 5.9E-10 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 SUPERFAMILY SSF50447 7 85 1.73E-8 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily SJPD1_2035 c4b9f0d7036e50091f4c27ab4f128625 179 Gene3D G3DSA:2.30.30.240 93 178 3.4E-12 T 13-10-2018 SJPD1_0896 be1a500736a0c58a0332bac0cddfbfe4 212 Pfam PF13247 4Fe-4S dicluster domain 70 164 4.3E-24 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0896 be1a500736a0c58a0332bac0cddfbfe4 212 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 111 122 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0896 be1a500736a0c58a0332bac0cddfbfe4 212 Gene3D G3DSA:3.30.70.20 1 212 2.1E-50 T 13-10-2018 SJPD1_0896 be1a500736a0c58a0332bac0cddfbfe4 212 SUPERFAMILY SSF54862 1 171 3.98E-51 T 13-10-2018 SJPD1_2315 62f920cceca4b3377cb33a317dd669c2 305 SUPERFAMILY SSF46689 195 244 1.67E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2315 62f920cceca4b3377cb33a317dd669c2 305 Gene3D G3DSA:1.10.10.60 190 299 2.5E-26 T 13-10-2018 SJPD1_2315 62f920cceca4b3377cb33a317dd669c2 305 SUPERFAMILY SSF46689 247 298 1.94E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2315 62f920cceca4b3377cb33a317dd669c2 305 Pfam PF12833 Helix-turn-helix domain 217 295 1.1E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2315 62f920cceca4b3377cb33a317dd669c2 305 Pfam PF06719 AraC-type transcriptional regulator N-terminus 29 181 8.3E-41 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal SJPD1_2315 62f920cceca4b3377cb33a317dd669c2 305 SMART SM00342 211 294 7.7E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_0609 b7f0b1c1cfca5147cd451cb3ae0bec8f 350 SUPERFAMILY SSF103039 204 346 1.83E-17 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0609 b7f0b1c1cfca5147cd451cb3ae0bec8f 350 Gene3D G3DSA:3.40.1550.10 199 349 6.2E-24 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0609 b7f0b1c1cfca5147cd451cb3ae0bec8f 350 Pfam PF13690 Chemotaxis phosphatase CheX 241 337 4.7E-13 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain SJPD1_0609 b7f0b1c1cfca5147cd451cb3ae0bec8f 350 SUPERFAMILY SSF52172 126 233 1.46E-5 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0324 3bedc9471c98ea232e6b9aa39cec2c09 257 Pfam PF05818 Enterobacterial TraT complement resistance protein 26 257 1.8E-64 T 13-10-2018 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 PIRSF PIRSF039144 1 112 2.1E-55 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 SUPERFAMILY SSF54913 1 112 2.89E-45 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 13-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 SMART SM00938 4 105 3.1E-66 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 PRINTS PR00340 P-II protein signature 83 103 3.7E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 PRINTS PR00340 P-II protein signature 2 17 3.7E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 PRINTS PR00340 P-II protein signature 23 41 3.7E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 PRINTS PR00340 P-II protein signature 52 75 3.7E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 9.4E-43 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_1874 2be6fca7d83406d690a7692e7ba0954c 112 Gene3D G3DSA:3.30.70.120 1 112 1.6E-46 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal SJPD1_2740 8e31823b852783a540a8dc90eb9eebf0 209 Pfam PF01810 LysE type translocator 19 207 5.9E-22 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_2740 8e31823b852783a540a8dc90eb9eebf0 209 PIRSF PIRSF006324 4 209 5.7E-43 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_0214 71d4c688b83b8c4e7bcc10a405dd260d 472 Gene3D G3DSA:3.40.605.10 25 455 1.6E-135 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_0214 71d4c688b83b8c4e7bcc10a405dd260d 472 SUPERFAMILY SSF53720 4 471 2.49E-129 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 SJPD1_0214 71d4c688b83b8c4e7bcc10a405dd260d 472 Pfam PF00171 Aldehyde dehydrogenase family 16 469 1.4E-137 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 SJPD1_0214 71d4c688b83b8c4e7bcc10a405dd260d 472 Gene3D G3DSA:3.40.309.10 250 438 1.6E-135 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 SJPD1_0214 71d4c688b83b8c4e7bcc10a405dd260d 472 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 246 253 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 346 454 2.3E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 SMART SM00283 276 537 7.0E-46 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 173 4.9E-15 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 Gene3D G3DSA:1.10.287.950 208 537 2.7E-60 T 13-10-2018 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 432 2.4E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 374 401 2.4E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 185 205 2.4E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 13 2.4E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1097 98bf70c16872848fbf3b9e8b1790eb5f 537 SUPERFAMILY SSF58104 230 536 4.05E-60 T 13-10-2018 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 Gene3D G3DSA:3.90.1150.10 24 381 2.0E-134 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 Gene3D G3DSA:3.40.640.10 61 284 2.0E-134 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 SUPERFAMILY SSF53383 2 388 5.92E-118 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 227 251 1.6E-12 T 13-10-2018 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 113 134 1.6E-12 T 13-10-2018 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 160 184 1.6E-12 T 13-10-2018 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 196 219 1.6E-12 T 13-10-2018 SJPD1_1617 58caa90c586e94c804c78b73a1f55e8a 389 Pfam PF00155 Aminotransferase class I and II 30 381 3.0E-73 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_2589 cc970a212bf876f8810af83497438727 387 Pfam PF13458 Periplasmic binding protein 34 353 1.9E-53 T 13-10-2018 IPR028081 Leucine-binding protein domain SJPD1_2589 cc970a212bf876f8810af83497438727 387 Gene3D G3DSA:3.40.50.2300 42 349 4.3E-88 T 13-10-2018 SJPD1_2589 cc970a212bf876f8810af83497438727 387 Gene3D G3DSA:3.40.50.2300 154 284 4.3E-88 T 13-10-2018 SJPD1_2589 cc970a212bf876f8810af83497438727 387 SUPERFAMILY SSF53822 33 382 6.06E-66 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_1113 70ae8358e570374583151318b369b471 605 Gene3D G3DSA:3.10.580.10 144 283 3.0E-18 T 13-10-2018 SJPD1_1113 70ae8358e570374583151318b369b471 605 Pfam PF00571 CBS domain 220 269 1.3E-5 T 13-10-2018 IPR000644 CBS domain SJPD1_1113 70ae8358e570374583151318b369b471 605 Pfam PF00027 Cyclic nucleotide-binding domain 35 115 1.4E-6 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_1113 70ae8358e570374583151318b369b471 605 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 462 599 4.6E-40 T 13-10-2018 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding SJPD1_1113 70ae8358e570374583151318b369b471 605 SUPERFAMILY SSF54631 146 271 3.16E-20 T 13-10-2018 SJPD1_1113 70ae8358e570374583151318b369b471 605 SMART SM00100 15 130 1.9E-4 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_1113 70ae8358e570374583151318b369b471 605 SMART SM00116 222 269 0.0014 T 13-10-2018 IPR000644 CBS domain SJPD1_1113 70ae8358e570374583151318b369b471 605 SMART SM00116 157 205 10.0 T 13-10-2018 IPR000644 CBS domain SJPD1_1113 70ae8358e570374583151318b369b471 605 Pfam PF03445 Putative nucleotidyltransferase DUF294 297 423 2.8E-36 T 13-10-2018 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 SJPD1_1113 70ae8358e570374583151318b369b471 605 Gene3D G3DSA:2.60.120.10 7 141 1.1E-16 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_1113 70ae8358e570374583151318b369b471 605 SUPERFAMILY SSF51206 5 130 5.5E-16 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_2878 9c935e14e92bdc51f2ce501c42f183d4 470 Pfam PF07277 SapC 245 462 3.1E-58 T 13-10-2018 IPR010836 SapC SJPD1_2878 9c935e14e92bdc51f2ce501c42f183d4 470 SUPERFAMILY SSF143422 3 126 6.41E-26 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 SJPD1_2878 9c935e14e92bdc51f2ce501c42f183d4 470 Gene3D G3DSA:3.30.70.1290 1 160 2.6E-30 T 13-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 SJPD1_2878 9c935e14e92bdc51f2ce501c42f183d4 470 Pfam PF01797 Transposase IS200 like 13 123 4.9E-15 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SJPD1_2878 9c935e14e92bdc51f2ce501c42f183d4 470 SMART SM01321 9 123 6.0E-30 T 13-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 SJPD1_0330 583f08839d0bd4cbd5b846f92284f805 330 Gene3D G3DSA:3.20.20.140 1 330 1.6E-104 T 13-10-2018 SJPD1_0330 583f08839d0bd4cbd5b846f92284f805 330 Hamap MF_01962 Adenine deaminase. 4 316 85.113 T 13-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 SJPD1_0330 583f08839d0bd4cbd5b846f92284f805 330 SUPERFAMILY SSF51556 4 321 5.73E-87 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_0330 583f08839d0bd4cbd5b846f92284f805 330 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 326 4.5E-118 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 SJPD1_0330 583f08839d0bd4cbd5b846f92284f805 330 Pfam PF00962 Adenosine/AMP deaminase 8 325 2.8E-75 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 Pfam PF02163 Peptidase family M50 7 336 9.7E-75 T 13-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 125 175 1.5E-6 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 Gene3D G3DSA:2.30.42.10 122 216 2.6E-16 T 13-10-2018 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 122 349 2.3E-53 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 123 2.2E-44 T 13-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 SUPERFAMILY SSF50156 82 188 1.09E-18 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 SJPD1_1444 ec8a557211e646d4d06a62e156ee8300 352 SMART SM00228 107 179 2.9E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 2 395 3.2E-98 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 SUPERFAMILY SSF53623 87 218 1.96E-27 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 Gene3D G3DSA:3.90.190.20 263 395 1.1E-33 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 Gene3D G3DSA:3.40.1190.10 80 258 1.3E-28 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 89 112 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 Pfam PF08245 Mur ligase middle domain 91 196 7.8E-16 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 SJPD1_2283 8eef2703559d7fc0875bb05cbb6f9639 397 SUPERFAMILY SSF53244 262 395 1.05E-30 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_2553 e529342f26d83843c873b27d4462fd76 279 Pfam PF12849 PBP superfamily domain 29 253 1.3E-29 T 13-10-2018 IPR024370 PBP domain SJPD1_2553 e529342f26d83843c873b27d4462fd76 279 Gene3D G3DSA:3.40.190.10 32 252 6.8E-83 T 13-10-2018 SJPD1_2553 e529342f26d83843c873b27d4462fd76 279 Gene3D G3DSA:3.40.190.10 105 222 6.8E-83 T 13-10-2018 SJPD1_2553 e529342f26d83843c873b27d4462fd76 279 SUPERFAMILY SSF53850 28 262 8.57E-26 T 13-10-2018 SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 SUPERFAMILY SSF51735 1 159 7.89E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 156 2.1E-31 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 PIRSF PIRSF000103 1 283 1.5E-69 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 162 280 3.2E-23 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 Gene3D G3DSA:3.40.50.720 1 157 7.5E-40 T 13-10-2018 SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 Gene3D G3DSA:1.10.1040.10 161 283 1.6E-29 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 SJPD1_0915 ca90705e7e8355acdab44db83673367d 283 SUPERFAMILY SSF48179 159 282 7.14E-28 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 SJPD1_1684 843ead1a6fbc576484fb9d5badfdaadf 286 Pfam PF13462 Thioredoxin 127 281 7.7E-18 T 13-10-2018 IPR012336 Thioredoxin-like fold SJPD1_1684 843ead1a6fbc576484fb9d5badfdaadf 286 SUPERFAMILY SSF52833 124 278 1.33E-24 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1684 843ead1a6fbc576484fb9d5badfdaadf 286 Gene3D G3DSA:3.40.30.10 124 285 4.9E-25 T 13-10-2018 SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 Pfam PF00072 Response regulator receiver domain 8 117 4.9E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 SUPERFAMILY SSF52172 4 175 7.55E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 SMART SM00448 6 116 2.5E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 226 3.6E-21 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 Gene3D G3DSA:1.10.10.10 124 227 4.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 SMART SM00862 150 226 4.1E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2643 088958df3352cbae8921a5dd364c1a06 227 Gene3D G3DSA:3.40.50.2300 1 123 2.5E-29 T 13-10-2018 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Gene3D G3DSA:3.30.70.270 528 706 9.0E-63 T 13-10-2018 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SMART SM00267 521 693 3.5E-68 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SUPERFAMILY SSF55073 537 695 1.45E-51 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 393 520 3.7E-7 T 13-10-2018 IPR000014 PAS domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SUPERFAMILY SSF141868 708 957 7.85E-83 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 530 692 1.3E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Pfam PF00990 Diguanylate cyclase, GGDEF domain 533 689 2.5E-53 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SMART SM01049 74 168 3.9E-20 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SMART SM01049 190 277 0.038 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Pfam PF13426 PAS domain 408 512 1.5E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SMART SM00052 703 949 1.0E-106 T 13-10-2018 IPR001633 EAL domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Pfam PF08269 Cache domain 38 329 3.3E-68 T 13-10-2018 IPR004010 Double Cache domain 2 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Gene3D G3DSA:3.30.450.20 394 512 2.0E-16 T 13-10-2018 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Gene3D G3DSA:3.20.20.450 707 958 2.5E-93 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Pfam PF00563 EAL domain 709 944 2.8E-68 T 13-10-2018 IPR001633 EAL domain SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Gene3D G3DSA:3.30.450.20 218 329 4.2E-19 T 13-10-2018 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 Gene3D G3DSA:3.30.450.20 68 217 3.1E-28 T 13-10-2018 SJPD1_2817 fdebab81881095b9cfcf72124f923207 961 SUPERFAMILY SSF55785 389 512 5.23E-14 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1610 fb856305ef19ae30dce6d51e7721709f 491 SUPERFAMILY SSF51905 59 420 6.76E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1610 fb856305ef19ae30dce6d51e7721709f 491 SUPERFAMILY SSF51905 228 318 7.87E-13 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1610 fb856305ef19ae30dce6d51e7721709f 491 Gene3D G3DSA:3.50.50.100 57 485 5.9E-85 T 13-10-2018 SJPD1_1610 fb856305ef19ae30dce6d51e7721709f 491 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 59 174 1.0E-13 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 Pfam PF01514 Secretory protein of YscJ/FliF family 29 221 3.3E-63 T 13-10-2018 IPR006182 Secretory protein YscJ/FliF SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 8 562 5.6E-133 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 PRINTS PR01009 Flagellar M-ring protein signature 198 216 1.4E-33 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 PRINTS PR01009 Flagellar M-ring protein signature 155 169 1.4E-33 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 PRINTS PR01009 Flagellar M-ring protein signature 123 141 1.4E-33 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 PRINTS PR01009 Flagellar M-ring protein signature 270 288 1.4E-33 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 PRINTS PR01009 Flagellar M-ring protein signature 343 367 1.4E-33 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 PIRSF PIRSF004862 1 564 3.8E-128 T 13-10-2018 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 Pfam PF08345 Flagellar M-ring protein C-terminal 257 425 1.7E-40 T 13-10-2018 IPR013556 Flagellar M-ring C-terminal SJPD1_0254 b83a20a44ade628bb48804811c6aa81f 576 Gene3D G3DSA:3.30.300.30 123 223 3.0E-14 T 13-10-2018 SJPD1_1598 24d28c471cb3d2970f323b839f02789e 423 Gene3D G3DSA:1.25.40.10 39 200 3.6E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1598 24d28c471cb3d2970f323b839f02789e 423 SUPERFAMILY SSF48452 39 395 3.56E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1598 24d28c471cb3d2970f323b839f02789e 423 Pfam PF13429 Tetratricopeptide repeat 266 397 1.8E-6 T 13-10-2018 SJPD1_1598 24d28c471cb3d2970f323b839f02789e 423 SUPERFAMILY SSF48452 272 393 2.37E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 431 459 2.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 501 513 2.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 474 487 2.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 297 325 2.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 PRINTS PR01047 Threonyl-tRNA synthetase signature 330 353 2.6E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 SUPERFAMILY SSF55186 35 208 4.06E-55 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 43 598 6.5E-218 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Gene3D G3DSA:3.30.930.10 191 498 2.2E-125 T 13-10-2018 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 SUPERFAMILY SSF52954 494 602 8.61E-28 T 13-10-2018 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Gene3D G3DSA:3.30.980.10 35 190 8.9E-54 T 13-10-2018 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Gene3D G3DSA:3.40.50.800 499 603 2.8E-30 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 287 495 3.6E-42 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Pfam PF03129 Anticodon binding domain 508 597 3.1E-21 T 13-10-2018 IPR004154 Anticodon-binding SJPD1_0113 c3644ba9283224067a29e5431110e507 604 SMART SM00863 137 186 7.6E-23 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 37 601 33.116 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 137 186 4.5E-14 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 SJPD1_0113 c3644ba9283224067a29e5431110e507 604 SUPERFAMILY SSF55681 210 493 2.68E-92 T 13-10-2018 SJPD1_1095 95d8e98449cd8fd75dbc83f50546bbcf 261 Pfam PF06738 Putative threonine/serine exporter 19 255 3.8E-54 T 13-10-2018 IPR010619 Putative threonine/serine exporter SJPD1_0993 467d2aad25e3fa360eae1ec93aefe8ad 212 Pfam PF00005 ABC transporter 17 158 2.1E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0993 467d2aad25e3fa360eae1ec93aefe8ad 212 SUPERFAMILY SSF52540 2 207 8.63E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0993 467d2aad25e3fa360eae1ec93aefe8ad 212 SMART SM00382 26 205 5.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0993 467d2aad25e3fa360eae1ec93aefe8ad 212 Gene3D G3DSA:3.40.50.300 1 212 3.8E-51 T 13-10-2018 SJPD1_0993 467d2aad25e3fa360eae1ec93aefe8ad 212 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 SUPERFAMILY SSF55729 25 135 5.85E-14 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 Pfam PF08218 Citrate lyase ligase C-terminal domain 144 327 2.5E-78 T 13-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 Gene3D G3DSA:3.40.630.30 6 133 1.5E-11 T 13-10-2018 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 SMART SM00764 144 329 2.8E-112 T 13-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 SUPERFAMILY SSF52374 144 331 7.74E-22 T 13-10-2018 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 Gene3D G3DSA:3.40.50.620 143 339 7.0E-17 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 PIRSF PIRSF005751 1 339 3.9E-127 T 13-10-2018 IPR005216 Citrate lyase ligase GO:0008771 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 145 193 2.8E-7 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 111 336 1.0E-66 T 13-10-2018 SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 Pfam PF13673 Acetyltransferase (GNAT) domain 17 112 9.1E-8 T 13-10-2018 IPR000182 GNAT domain SJPD1_2122 9a201a4e9a551fc3c0447a02e8f1b96a 339 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 12 335 3.6E-130 T 13-10-2018 IPR005216 Citrate lyase ligase GO:0008771 SJPD1_1142 430d82123cf9f4015ddbdd967adb6efb 312 SUPERFAMILY SSF63411 125 311 2.0E-36 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SJPD1_1142 430d82123cf9f4015ddbdd967adb6efb 312 Gene3D G3DSA:3.30.830.10 1 105 9.0E-17 T 13-10-2018 SJPD1_1142 430d82123cf9f4015ddbdd967adb6efb 312 SUPERFAMILY SSF63411 4 113 1.45E-15 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 SJPD1_1142 430d82123cf9f4015ddbdd967adb6efb 312 Gene3D G3DSA:3.30.830.10 120 311 1.4E-41 T 13-10-2018 SJPD1_1142 430d82123cf9f4015ddbdd967adb6efb 312 Pfam PF05193 Peptidase M16 inactive domain 66 240 5.0E-26 T 13-10-2018 IPR007863 Peptidase M16, C-terminal SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 2.0E-23 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 1.7E-114 T 13-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 SUPERFAMILY SSF117143 92 222 9.55E-34 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 2.3E-29 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 136 7.0E-47 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G SJPD1_1938 cacae36db1a7c34e2f83889ae1045c3a 262 Pfam PF00460 Flagella basal body rod protein 5 35 1.8E-11 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Gene3D G3DSA:1.10.720.10 58 102 4.6E-14 T 13-10-2018 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Pfam PF07498 Rho termination factor, N-terminal domain 62 103 9.9E-15 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 TIGRFAM TIGR00767 rho: transcription termination factor Rho 58 470 3.2E-203 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 SUPERFAMILY SSF50249 105 178 3.26E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 SMART SM00382 223 381 3.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Gene3D G3DSA:3.40.50.300 187 470 4.8E-122 T 13-10-2018 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Hamap MF_01884 Transcription termination factor Rho [rho]. 57 471 211.643 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 SMART SM00357 108 174 1.5E-11 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 SUPERFAMILY SSF52540 147 424 3.94E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Pfam PF07497 Rho termination factor, RNA-binding domain 108 178 4.5E-27 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 SUPERFAMILY SSF68912 58 103 1.73E-9 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 213 416 3.1E-22 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 Gene3D G3DSA:2.40.50.140 103 179 3.9E-29 T 13-10-2018 SJPD1_0553 6aa419c7b435cb429aca35be1667a7aa 471 SMART SM00959 61 103 8.0E-15 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 SJPD1_0380 7eeb75b15fd24efcbb2eb62a04fc33d7 640 Pfam PF00271 Helicase conserved C-terminal domain 313 373 2.2E-4 T 13-10-2018 IPR001650 Helicase, C-terminal SJPD1_0380 7eeb75b15fd24efcbb2eb62a04fc33d7 640 Gene3D G3DSA:3.40.50.300 235 403 2.2E-10 T 13-10-2018 SJPD1_0380 7eeb75b15fd24efcbb2eb62a04fc33d7 640 SUPERFAMILY SSF52540 35 377 2.31E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0380 7eeb75b15fd24efcbb2eb62a04fc33d7 640 SMART SM00487 19 213 2.8E-4 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain SJPD1_0380 7eeb75b15fd24efcbb2eb62a04fc33d7 640 Gene3D G3DSA:3.40.50.300 12 205 1.8E-11 T 13-10-2018 SJPD1_2265 85ded69ab77620e1bed2387be81841b5 225 Gene3D G3DSA:3.60.140.10 1 225 2.0E-78 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily SJPD1_2265 85ded69ab77620e1bed2387be81841b5 225 SUPERFAMILY SSF64438 3 225 7.33E-73 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic SJPD1_2265 85ded69ab77620e1bed2387be81841b5 225 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 6 223 3.8E-72 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase SJPD1_2265 85ded69ab77620e1bed2387be81841b5 225 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 11 224 1.0E-54 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase SJPD1_0279 95690ee27a2f4efb91d3f4e3ed8c14d0 111 Pfam PF02152 Dihydroneopterin aldolase 3 103 1.2E-15 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 SJPD1_0279 95690ee27a2f4efb91d3f4e3ed8c14d0 111 SMART SM00905 3 106 1.7E-14 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 SJPD1_0279 95690ee27a2f4efb91d3f4e3ed8c14d0 111 TIGRFAM TIGR00526 folB_dom: FolB domain 2 110 1.3E-15 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 SJPD1_0279 95690ee27a2f4efb91d3f4e3ed8c14d0 111 SUPERFAMILY SSF55620 3 100 6.12E-18 T 13-10-2018 SJPD1_0279 95690ee27a2f4efb91d3f4e3ed8c14d0 111 Gene3D G3DSA:3.30.1130.10 1 107 4.1E-13 T 13-10-2018 SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 217 254 - T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 Gene3D G3DSA:3.90.1150.10 7 382 8.8E-118 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 SUPERFAMILY SSF53383 9 393 1.55E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 Pfam PF00202 Aminotransferase class-III 19 390 1.4E-89 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 PIRSF PIRSF000521 165 394 2.1E-25 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 PIRSF PIRSF000521 4 162 2.4E-6 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 SJPD1_1169 7b0f7aa315cccdf6ab67a9b541ea6deb 395 Gene3D G3DSA:3.40.640.10 54 299 8.8E-118 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 Gene3D G3DSA:1.10.10.10 1 141 3.8E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 ProSitePatterns PS01117 MarR-type HTH domain signature. 65 99 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 SMART SM00347 26 126 7.3E-19 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 SUPERFAMILY SSF46785 2 141 6.27E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 Pfam PF01047 MarR family 33 90 1.0E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 1.6E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 1.6E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 1.6E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2745 b661dccb6bb75505af3fba25c77446f9 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 1.6E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 310 5.9E-105 T 13-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 Gene3D G3DSA:3.20.20.210 377 732 1.4E-295 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 PIRSF PIRSF000382 1 732 5.1E-303 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 8 732 3.8E-290 T 13-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 Gene3D G3DSA:3.20.20.210 6 500 1.4E-295 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 407 728 3.9E-140 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 SUPERFAMILY SSF51726 4 365 2.09E-88 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 SJPD1_1119 83b51b7902bd4f1c2cc73497c7306111 732 SUPERFAMILY SSF51726 383 729 1.24E-105 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 4 480 1.0E-145 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 Gene3D G3DSA:3.90.700.10 227 326 1.0E-124 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 Gene3D G3DSA:3.50.50.60 6 383 1.0E-124 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 Gene3D G3DSA:1.20.58.100 398 482 5.3E-12 T 13-10-2018 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 SUPERFAMILY SSF56425 217 331 3.44E-34 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 Pfam PF00890 FAD binding domain 6 372 3.6E-82 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 SUPERFAMILY SSF46977 410 479 3.79E-13 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_0710 cb0c658d6231024abb3321964349fd7d 489 SUPERFAMILY SSF51905 2 395 5.72E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1387 d439239637253e80705e0c793d1722f0 242 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 8 90 1.6E-33 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal SJPD1_1387 d439239637253e80705e0c793d1722f0 242 Pfam PF01478 Type IV leader peptidase family 103 202 2.5E-11 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 SJPD1_1926 5159fe5d8fe690a8dba1614acfa4dbf8 151 Pfam PF09626 Dihaem cytochrome c 28 137 4.6E-36 T 13-10-2018 IPR018588 Dihaem cytochrome c SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 SUPERFAMILY SSF141868 400 631 3.4E-56 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 SUPERFAMILY SSF55073 232 388 6.59E-38 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 224 384 3.9E-42 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 SMART SM00267 216 386 2.0E-39 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 Pfam PF00990 Diguanylate cyclase, GGDEF domain 227 382 2.7E-37 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 SMART SM00052 394 634 2.2E-34 T 13-10-2018 IPR001633 EAL domain SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 Pfam PF00563 EAL domain 400 629 5.6E-54 T 13-10-2018 IPR001633 EAL domain SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 Gene3D G3DSA:3.30.70.270 219 389 2.7E-43 T 13-10-2018 SJPD1_0527 33c1e09d5595279132a68e0ab42d264f 635 Gene3D G3DSA:3.20.20.450 398 634 1.1E-56 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 139 159 - T 13-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 Pfam PF00919 Uncharacterized protein family UPF0004 3 98 6.3E-25 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 389 1.6E-100 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 SUPERFAMILY SSF102114 114 356 1.22E-47 T 13-10-2018 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 3 425 1.3E-117 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 Gene3D G3DSA:2.40.50.140 367 435 2.9E-5 T 13-10-2018 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 SMART SM00729 135 352 4.3E-40 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 Gene3D G3DSA:3.40.50.12160 2 130 8.7E-38 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 Pfam PF04055 Radical SAM superfamily 141 309 4.4E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 2 432 54.806 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 SJPD1_0545 e6d57fc43beaffa3b5d3188776b913cd 436 Gene3D G3DSA:3.80.30.20 133 366 1.8E-65 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_2049 6fb469f684c34939e9cf946129276883 476 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 9 474 1.3E-190 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 ProSitePatterns PS00180 Glutamine synthetase signature 1. 55 73 - T 13-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 Gene3D G3DSA:3.10.20.70 7 109 6.5E-34 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 264 279 - T 13-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 SMART SM01230 107 385 1.8E-138 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 Pfam PF00120 Glutamine synthetase, catalytic domain 108 471 2.7E-123 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 SUPERFAMILY SSF54368 8 106 4.05E-33 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 SUPERFAMILY SSF55931 108 475 2.94E-120 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 Gene3D G3DSA:3.30.590.10 110 458 1.1E-125 T 13-10-2018 SJPD1_2049 6fb469f684c34939e9cf946129276883 476 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 19 99 5.6E-31 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 SJPD1_2091 dbbe1305f40b9e410fb9de6464cdbf7c 240 Gene3D G3DSA:1.20.1290.10 13 240 7.4E-56 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_2091 dbbe1305f40b9e410fb9de6464cdbf7c 240 SUPERFAMILY SSF69118 26 239 6.14E-43 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_2091 dbbe1305f40b9e410fb9de6464cdbf7c 240 Pfam PF02627 Carboxymuconolactone decarboxylase family 27 88 3.9E-7 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_2091 dbbe1305f40b9e410fb9de6464cdbf7c 240 Pfam PF02627 Carboxymuconolactone decarboxylase family 149 228 9.4E-10 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 Pfam PF00579 tRNA synthetases class I (W and Y) 37 322 5.7E-77 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 Gene3D G3DSA:3.10.290.10 330 402 8.8E-18 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 Pfam PF01479 S4 domain 343 382 3.4E-5 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 57 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 SMART SM00363 342 403 0.002 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 SUPERFAMILY SSF52374 10 319 2.5E-88 T 13-10-2018 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 Gene3D G3DSA:1.10.240.10 228 329 5.3E-19 T 13-10-2018 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 SUPERFAMILY SSF55174 305 402 6.02E-16 T 13-10-2018 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 Gene3D G3DSA:3.40.50.620 6 223 3.1E-65 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 3 402 45.016 T 13-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 51 73 8.7E-22 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 183 205 8.7E-22 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 217 229 8.7E-22 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 8.7E-22 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 SJPD1_0799 a14bb16bba1ca20982cae65e63691e65 403 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 6 402 1.5E-118 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 159 1.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 1.8E-13 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 166 0.002 T 13-10-2018 SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 Pfam PF00106 short chain dehydrogenase 5 181 4.9E-36 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 178 2.0E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 2.0E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 2.0E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 2.0E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.0E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 Gene3D G3DSA:3.40.50.720 1 228 4.7E-49 T 13-10-2018 SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 SUPERFAMILY SSF51735 1 199 3.75E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2746 bcff5d12e21a566c1e4172d49f0ae53c 236 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 127 155 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 SUPERFAMILY SSF52440 3 111 3.17E-28 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 SUPERFAMILY SSF56059 112 311 8.84E-57 T 13-10-2018 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 Gene3D G3DSA:3.30.1490.20 125 194 1.3E-26 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 Gene3D G3DSA:3.40.50.20 1 123 2.6E-44 T 13-10-2018 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 Gene3D G3DSA:3.30.470.20 195 385 7.3E-55 T 13-10-2018 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 SUPERFAMILY SSF51246 319 384 2.67E-7 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 7 386 45.952 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 SJPD1_2377 6f9df87a7f2941d36bbd2ff43c86f44f 386 Pfam PF02222 ATP-grasp domain 122 292 7.1E-56 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type SJPD1_0066 8c97e43571d58e4039e3c74103e00ef5 522 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 132 441 9.8E-33 T 13-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain SJPD1_0066 8c97e43571d58e4039e3c74103e00ef5 522 Gene3D G3DSA:3.40.50.300 132 450 8.8E-38 T 13-10-2018 SJPD1_0066 8c97e43571d58e4039e3c74103e00ef5 522 Gene3D G3DSA:1.10.8.80 192 300 8.8E-38 T 13-10-2018 SJPD1_0066 8c97e43571d58e4039e3c74103e00ef5 522 SUPERFAMILY SSF52540 110 501 1.24E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1929 048a0e23d79421d2ea1e3338b2346212 585 SUPERFAMILY SSF56801 2 566 1.7E-152 T 13-10-2018 SJPD1_1929 048a0e23d79421d2ea1e3338b2346212 585 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 13-10-2018 IPR020845 AMP-binding, conserved site SJPD1_1929 048a0e23d79421d2ea1e3338b2346212 585 Gene3D G3DSA:3.30.300.30 447 575 1.9E-24 T 13-10-2018 SJPD1_1929 048a0e23d79421d2ea1e3338b2346212 585 Pfam PF13193 AMP-binding enzyme C-terminal domain 459 538 3.4E-23 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain SJPD1_1929 048a0e23d79421d2ea1e3338b2346212 585 Gene3D G3DSA:3.40.50.12780 1 443 3.4E-106 T 13-10-2018 SJPD1_1929 048a0e23d79421d2ea1e3338b2346212 585 Pfam PF00501 AMP-binding enzyme 16 450 3.8E-86 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_0746 662b077393a847f00193e58f58294687 279 PIRSF PIRSF012524 3 279 6.2E-61 T 13-10-2018 IPR014464 Conserved virulence factor B SJPD1_0746 662b077393a847f00193e58f58294687 279 Pfam PF13509 S1 domain 7 66 4.2E-21 T 13-10-2018 IPR039566 Conserved virulence factor B, S1 domain SJPD1_0746 662b077393a847f00193e58f58294687 279 Gene3D G3DSA:1.10.10.10 217 279 2.5E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0746 662b077393a847f00193e58f58294687 279 SMART SM00316 71 134 7.1 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0746 662b077393a847f00193e58f58294687 279 SMART SM00316 147 209 3.4 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_0746 662b077393a847f00193e58f58294687 279 SMART SM00316 6 67 30.0 T 13-10-2018 IPR022967 RNA-binding domain, S1 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 SUPERFAMILY SSF142695 228 336 4.18E-15 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 8 197 3.8E-80 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 Pfam PF00925 GTP cyclohydrolase II 188 337 1.7E-10 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 198 1.3E-75 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 SUPERFAMILY SSF55821 2 201 7.55E-80 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 202 36.937 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 PIRSF PIRSF001259 2 292 7.8E-76 T 13-10-2018 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 PIRSF PIRSF001259 283 340 4.9E-9 T 13-10-2018 SJPD1_1199 a06da13dab334cf692df0bc5e1b31d88 340 Gene3D G3DSA:3.90.870.10 1 205 2.7E-82 T 13-10-2018 SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Pfam PF00563 EAL domain 597 827 1.5E-54 T 13-10-2018 IPR001633 EAL domain SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Pfam PF13426 PAS domain 322 423 1.4E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 SUPERFAMILY SSF141868 597 832 7.45E-60 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 SMART SM00052 590 832 8.8E-42 T 13-10-2018 IPR001633 EAL domain SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 SMART SM00086 382 424 3.4E-6 T 13-10-2018 IPR001610 PAC motif SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Pfam PF00990 Diguanylate cyclase, GGDEF domain 434 569 1.0E-8 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 SMART SM00267 421 579 4.6E-5 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Pfam PF05228 CHASE4 domain 52 189 1.7E-10 T 13-10-2018 IPR007892 CHASE4 SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 SUPERFAMILY SSF55073 439 578 2.59E-15 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 311 425 1.1E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Gene3D G3DSA:3.20.20.450 592 835 6.5E-64 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 SUPERFAMILY SSF55785 322 421 1.74E-26 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Gene3D G3DSA:3.30.450.20 304 427 1.2E-27 T 13-10-2018 SJPD1_0297 93bd95d0c2d5bff804fe058f49560054 835 Gene3D G3DSA:3.30.70.270 431 591 1.2E-14 T 13-10-2018 SJPD1_0643 01cfd27a45b85605efdee72cbd5ffc31 151 PIRSF PIRSF004505 1 151 1.0E-38 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 SJPD1_0643 01cfd27a45b85605efdee72cbd5ffc31 151 Gene3D G3DSA:3.40.1280.10 1 151 8.7E-39 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SJPD1_0643 01cfd27a45b85605efdee72cbd5ffc31 151 SUPERFAMILY SSF75217 1 150 6.54E-34 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases SJPD1_0643 01cfd27a45b85605efdee72cbd5ffc31 151 Pfam PF02590 Predicted SPOUT methyltransferase 1 150 2.8E-36 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 SJPD1_0643 01cfd27a45b85605efdee72cbd5ffc31 151 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 151 22.33 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 SJPD1_0413 4aacdd4f000b03a20034381057417b5f 278 Gene3D G3DSA:3.90.1640.20 7 277 1.6E-63 T 13-10-2018 SJPD1_0413 4aacdd4f000b03a20034381057417b5f 278 Pfam PF14336 Domain of unknown function (DUF4392) 7 271 2.2E-62 T 13-10-2018 IPR025504 Domain of unknown function DUF4392 KEGG: 00471+4.2.1.48 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 164 182 4.1E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 194 211 4.1E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 41 54 4.1E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 245 259 4.1E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 78 97 4.1E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 145 161 4.1E-54 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 PIRSF PIRSF005419 9 730 1.9E-234 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 Pfam PF00771 FHIPEP family 34 716 1.2E-251 T 13-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 Gene3D G3DSA:1.10.8.540 536 624 1.1E-25 T 13-10-2018 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 Gene3D G3DSA:1.10.490.80 626 725 3.4E-6 T 13-10-2018 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 150 173 - T 13-10-2018 IPR025505 FHIPEP conserved site SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 23 725 4.7E-274 T 13-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 SJPD1_1726 edcf611245ab7e927359361d51ebdd94 730 Gene3D G3DSA:3.40.30.60 392 535 1.2E-53 T 13-10-2018 SJPD1_1506 a8a7b2ee8848785dc43e7eb768321e40 138 SUPERFAMILY SSF82649 15 129 3.92E-16 T 13-10-2018 SJPD1_1506 a8a7b2ee8848785dc43e7eb768321e40 138 Pfam PF01592 NifU-like N terminal domain 15 130 7.0E-9 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 SJPD1_1506 a8a7b2ee8848785dc43e7eb768321e40 138 Gene3D G3DSA:3.90.1010.10 12 137 6.5E-15 T 13-10-2018 SJPD1_2320 543fdedcac63abae619b0bb1064ec67f 281 SUPERFAMILY SSF161098 63 264 1.57E-29 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2320 543fdedcac63abae619b0bb1064ec67f 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 275 4.1E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2320 543fdedcac63abae619b0bb1064ec67f 281 Gene3D G3DSA:1.10.3720.10 61 281 6.2E-27 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2320 543fdedcac63abae619b0bb1064ec67f 281 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 15 280 3.8E-84 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 Pfam PF00384 Molybdopterin oxidoreductase 2 491 5.6E-85 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 SUPERFAMILY SSF53706 2 613 1.01E-158 T 13-10-2018 SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 437 454 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 Gene3D G3DSA:2.40.40.20 587 749 1.5E-55 T 13-10-2018 SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 Pfam PF01568 Molydopterin dinucleotide binding domain 613 729 1.3E-29 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 SUPERFAMILY SSF50692 606 754 1.31E-45 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_0453 2c22da431d0cd5f6849b235cc807414d 757 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 652 679 - T 13-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 SJPD1_0387 9764ddbbb558c3d75381cfdb50d11f72 210 SUPERFAMILY SSF53041 4 148 3.4E-29 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 SJPD1_0387 9764ddbbb558c3d75381cfdb50d11f72 210 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 13-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 SJPD1_0387 9764ddbbb558c3d75381cfdb50d11f72 210 Pfam PF00239 Resolvase, N terminal domain 5 147 8.9E-34 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SJPD1_0387 9764ddbbb558c3d75381cfdb50d11f72 210 SMART SM00857 4 149 9.4E-36 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 SJPD1_0387 9764ddbbb558c3d75381cfdb50d11f72 210 Gene3D G3DSA:3.40.50.1390 2 158 2.7E-29 T 13-10-2018 SJPD1_1029 d1676e786359ffe706b5688d5abd2713 695 Gene3D G3DSA:2.40.170.20 200 695 2.7E-19 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_1029 d1676e786359ffe706b5688d5abd2713 695 Gene3D G3DSA:2.170.130.10 69 190 5.7E-11 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_1029 d1676e786359ffe706b5688d5abd2713 695 Pfam PF07715 TonB-dependent Receptor Plug Domain 69 162 9.5E-11 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_1029 d1676e786359ffe706b5688d5abd2713 695 SUPERFAMILY SSF56935 70 695 1.72E-45 T 13-10-2018 SJPD1_2141 9c2ad5e8415ac35c0261048ae61aeb21 112 PIRSF PIRSF037511 3 112 1.1E-23 T 13-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 SJPD1_2141 9c2ad5e8415ac35c0261048ae61aeb21 112 Pfam PF01253 Translation initiation factor SUI1 44 108 6.5E-9 T 13-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 SJPD1_2141 9c2ad5e8415ac35c0261048ae61aeb21 112 SUPERFAMILY SSF55159 39 111 5.75E-16 T 13-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 SJPD1_2141 9c2ad5e8415ac35c0261048ae61aeb21 112 Gene3D G3DSA:3.30.780.10 39 112 5.7E-18 T 13-10-2018 SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 Gene3D G3DSA:1.10.10.10 1 84 1.8E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 Gene3D G3DSA:3.40.190.290 89 295 5.5E-26 T 13-10-2018 SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 SUPERFAMILY SSF53850 86 292 2.17E-28 T 13-10-2018 SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 SUPERFAMILY SSF46785 1 84 4.46E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.9E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 Pfam PF03466 LysR substrate binding domain 87 290 3.9E-32 T 13-10-2018 IPR005119 LysR, substrate-binding SJPD1_0334 eb333bcab4ff993d73056ce27f302f6e 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.9E-12 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0451 6dadecf1a9872d7447fc76c9c96a099c 445 Pfam PF01554 MatE 21 181 9.3E-25 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 SJPD1_0451 6dadecf1a9872d7447fc76c9c96a099c 445 Pfam PF01554 MatE 248 405 2.0E-25 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 SJPD1_0451 6dadecf1a9872d7447fc76c9c96a099c 445 PIRSF PIRSF006603 1 444 2.7E-96 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 SJPD1_0451 6dadecf1a9872d7447fc76c9c96a099c 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 420 3.1E-56 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 SUPERFAMILY SSF57662 15 116 1.57E-21 T 13-10-2018 IPR036644 Ferredoxin thioredoxin reductase catalytic beta subunit superfamily GO:0016730|GO:0055114 SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 Gene3D G3DSA:3.40.250.10 139 246 6.0E-14 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 SMART SM00450 147 245 4.0E-8 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 Pfam PF00581 Rhodanese-like domain 146 239 1.2E-7 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 Gene3D G3DSA:3.90.460.10 11 127 4.4E-18 T 13-10-2018 IPR036644 Ferredoxin thioredoxin reductase catalytic beta subunit superfamily GO:0016730|GO:0055114 SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 Pfam PF02943 Ferredoxin thioredoxin reductase catalytic beta chain 16 122 5.2E-33 T 13-10-2018 IPR004209 Ferredoxin thioredoxin reductase catalytic beta subunit GO:0016730|GO:0055114 SJPD1_0893 3ce1325b574c427ed0662906c11f2f46 247 SUPERFAMILY SSF52821 134 239 5.63E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1503 487ece0709cf8849631647223b98152e 177 SUPERFAMILY SSF69118 1 174 3.48E-33 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_1503 487ece0709cf8849631647223b98152e 177 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 61 107 2.5E-17 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_1503 487ece0709cf8849631647223b98152e 177 Pfam PF02627 Carboxymuconolactone decarboxylase family 56 120 2.3E-7 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_1503 487ece0709cf8849631647223b98152e 177 Gene3D G3DSA:1.20.1290.10 14 177 4.0E-22 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 SJPD1_0381 1cc279f7a9f1c3dfc68c216d4ce8ceb1 383 Pfam PF10544 T5orf172 domain 254 363 1.6E-14 T 13-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding SJPD1_0381 1cc279f7a9f1c3dfc68c216d4ce8ceb1 383 SMART SM00974 269 363 1.3E-18 T 13-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding SJPD1_0864 6bf4f5db405bfc2663a58b3c763baa83 303 Pfam PF05368 NmrA-like family 5 239 4.3E-16 T 13-10-2018 IPR008030 NmrA-like domain Reactome: R-HSA-70635 SJPD1_0864 6bf4f5db405bfc2663a58b3c763baa83 303 SUPERFAMILY SSF51735 4 256 2.82E-19 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0864 6bf4f5db405bfc2663a58b3c763baa83 303 Gene3D G3DSA:3.40.50.720 5 217 3.3E-28 T 13-10-2018 SJPD1_0864 6bf4f5db405bfc2663a58b3c763baa83 303 Gene3D G3DSA:3.90.25.10 157 273 3.3E-28 T 13-10-2018 SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 Gene3D G3DSA:1.10.1740.110 176 283 6.9E-119 T 13-10-2018 SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 Pfam PF00561 alpha/beta hydrolase fold 41 353 1.2E-22 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 SUPERFAMILY SSF53474 9 365 1.26E-81 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 PIRSF PIRSF000443 2 369 1.1E-119 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 11 365 1.4E-112 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 4 366 26.184 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 SJPD1_0594 c64cd9b8d34d8aeafc4619adea6a3adb 369 Gene3D G3DSA:3.40.50.1820 16 354 6.9E-119 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0355 cf01c2fb46fd7a4a394d47253cb71172 100 Pfam PF13499 EF-hand domain pair 29 90 4.1E-8 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_0355 cf01c2fb46fd7a4a394d47253cb71172 100 SUPERFAMILY SSF47473 22 92 2.44E-11 T 13-10-2018 IPR011992 EF-hand domain pair SJPD1_0355 cf01c2fb46fd7a4a394d47253cb71172 100 ProSitePatterns PS00018 EF-hand calcium-binding domain. 34 46 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_0355 cf01c2fb46fd7a4a394d47253cb71172 100 Gene3D G3DSA:1.10.238.10 28 98 4.5E-15 T 13-10-2018 SJPD1_0355 cf01c2fb46fd7a4a394d47253cb71172 100 ProSitePatterns PS00018 EF-hand calcium-binding domain. 77 89 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_1424 4f0e31b800826098945a23986394bae2 105 Pfam PF13187 4Fe-4S dicluster domain 18 70 3.6E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1424 4f0e31b800826098945a23986394bae2 105 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 56 67 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1424 4f0e31b800826098945a23986394bae2 105 SUPERFAMILY SSF54862 8 87 7.91E-17 T 13-10-2018 SJPD1_1424 4f0e31b800826098945a23986394bae2 105 Gene3D G3DSA:3.30.70.20 13 87 1.2E-14 T 13-10-2018 SJPD1_2757 7368363ae7757423d387f41a7b8e1802 231 SUPERFAMILY SSF52402 4 189 1.86E-34 T 13-10-2018 SJPD1_2757 7368363ae7757423d387f41a7b8e1802 231 Gene3D G3DSA:3.40.50.620 2 231 2.8E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2757 7368363ae7757423d387f41a7b8e1802 231 PIRSF PIRSF000857 1 231 7.8E-62 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 SJPD1_2757 7368363ae7757423d387f41a7b8e1802 231 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 28 201 2.8E-28 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 SJPD1_2564 a1421490972f60f94d8cd2274a84d47a 338 Gene3D G3DSA:3.40.50.1980 180 283 1.5E-55 T 13-10-2018 SJPD1_2564 a1421490972f60f94d8cd2274a84d47a 338 SUPERFAMILY SSF53807 21 336 2.86E-44 T 13-10-2018 SJPD1_2564 a1421490972f60f94d8cd2274a84d47a 338 Gene3D G3DSA:3.40.50.1980 16 151 1.7E-38 T 13-10-2018 SJPD1_2564 a1421490972f60f94d8cd2274a84d47a 338 Pfam PF01497 Periplasmic binding protein 89 276 1.1E-20 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_2564 a1421490972f60f94d8cd2274a84d47a 338 Gene3D G3DSA:1.20.58.2180 157 329 1.5E-55 T 13-10-2018 SJPD1_1411 f2f8d74bea1292d7e45de73aa5979a1b 283 PIRSF PIRSF005624 63 283 1.6E-94 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 SJPD1_1411 f2f8d74bea1292d7e45de73aa5979a1b 283 SUPERFAMILY SSF52540 69 276 4.05E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1411 f2f8d74bea1292d7e45de73aa5979a1b 283 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 73 280 3.6E-88 T 13-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 SJPD1_1411 f2f8d74bea1292d7e45de73aa5979a1b 283 Gene3D G3DSA:3.40.50.300 80 282 8.4E-64 T 13-10-2018 SJPD1_1411 f2f8d74bea1292d7e45de73aa5979a1b 283 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 100 259 1.9E-30 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain SJPD1_1609 d5c3f7b1b1e0000e50024c58f21b066d 125 Pfam PF00034 Cytochrome c 38 118 7.1E-6 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1609 d5c3f7b1b1e0000e50024c58f21b066d 125 SUPERFAMILY SSF46626 6 120 9.45E-12 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1609 d5c3f7b1b1e0000e50024c58f21b066d 125 Gene3D G3DSA:1.10.760.10 36 119 1.9E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2093 313174c0b7e9e28487cfbb0b852f68ac 387 Pfam PF07690 Major Facilitator Superfamily 10 229 7.2E-32 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2093 313174c0b7e9e28487cfbb0b852f68ac 387 Gene3D G3DSA:1.20.1250.20 204 384 9.3E-15 T 13-10-2018 SJPD1_2093 313174c0b7e9e28487cfbb0b852f68ac 387 SUPERFAMILY SSF103473 5 380 7.98E-56 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2093 313174c0b7e9e28487cfbb0b852f68ac 387 Gene3D G3DSA:1.20.1250.20 1 203 5.0E-31 T 13-10-2018 SJPD1_1453 e72a05025cd20618002089446b700da2 643 Pfam PF03961 Flagellar Assembly Protein A 150 584 9.8E-40 T 13-10-2018 IPR005646 Flagellar assembly protein A SJPD1_2454 02e809cafe51c2dabf74a8946d96ceec 432 SMART SM00448 2 114 1.0E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2454 02e809cafe51c2dabf74a8946d96ceec 432 Gene3D G3DSA:3.40.50.12740 2 151 5.7E-39 T 13-10-2018 SJPD1_2454 02e809cafe51c2dabf74a8946d96ceec 432 SUPERFAMILY SSF52172 1 151 1.2E-38 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2454 02e809cafe51c2dabf74a8946d96ceec 432 Pfam PF00072 Response regulator receiver domain 4 114 5.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1936 f4f082bda56dc7f0dae620ffba26bedc 224 Pfam PF03591 AzlC protein 12 150 1.8E-42 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease SJPD1_0342 7cc1837e9e2748f5e617ee57f31a11eb 155 SUPERFAMILY SSF55083 21 150 4.05E-40 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 SJPD1_0342 7cc1837e9e2748f5e617ee57f31a11eb 155 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 107 118 - T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 SJPD1_0342 7cc1837e9e2748f5e617ee57f31a11eb 155 Gene3D G3DSA:3.30.70.560 19 154 5.8E-40 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 SJPD1_0342 7cc1837e9e2748f5e617ee57f31a11eb 155 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 23 150 3.4E-37 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 SJPD1_0342 7cc1837e9e2748f5e617ee57f31a11eb 155 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 24 150 1.2E-25 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 15 157 2.0E-23 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 Gene3D G3DSA:4.10.480.10 175 254 3.2E-21 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 86 100 2.2E-12 T 13-10-2018 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 137 160 2.2E-12 T 13-10-2018 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 228 241 2.2E-12 T 13-10-2018 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 201 227 2.2E-12 T 13-10-2018 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 SUPERFAMILY SSF56770 4 251 1.31E-58 T 13-10-2018 SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 Gene3D G3DSA:3.40.50.700 1 174 2.7E-32 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 175 249 4.2E-24 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal SJPD1_1401 7f14e2b96127545ea736b97b69e21113 296 PIRSF PIRSF000310 1 296 1.9E-63 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 SJPD1_0335 b54f41a27134958988772b2227f75c2c 342 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 5 200 0.002 T 13-10-2018 SJPD1_0335 b54f41a27134958988772b2227f75c2c 342 Pfam PF03601 Conserved hypothetical protein 698 13 321 9.2E-98 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 SJPD1_0335 b54f41a27134958988772b2227f75c2c 342 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 12 336 1.6E-100 T 13-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 SJPD1_2436 65afea5a90cf7afbd9a6be4bb2bc50bd 93 Gene3D G3DSA:3.30.70.330 3 90 1.4E-17 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily SJPD1_2436 65afea5a90cf7afbd9a6be4bb2bc50bd 93 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 4 93 13.156 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 SJPD1_2436 65afea5a90cf7afbd9a6be4bb2bc50bd 93 SUPERFAMILY SSF54189 7 89 6.83E-21 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2436 65afea5a90cf7afbd9a6be4bb2bc50bd 93 Pfam PF00276 Ribosomal protein L23 9 88 7.1E-17 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 SJPD1_0372 8163e78cc938ffcbaf28d653e70918a5 317 SUPERFAMILY SSF53850 22 316 7.86E-80 T 13-10-2018 SJPD1_0372 8163e78cc938ffcbaf28d653e70918a5 317 Pfam PF16868 NMT1-like family 26 314 2.0E-94 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family SJPD1_0372 8163e78cc938ffcbaf28d653e70918a5 317 Gene3D G3DSA:3.40.190.10 26 314 3.9E-105 T 13-10-2018 SJPD1_0372 8163e78cc938ffcbaf28d653e70918a5 317 Gene3D G3DSA:3.40.190.10 113 251 3.9E-105 T 13-10-2018 SJPD1_0372 8163e78cc938ffcbaf28d653e70918a5 317 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 1 314 2.5E-110 T 13-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family SJPD1_0807 e474c1dc76556f0050bf985dd9235d89 292 Gene3D G3DSA:3.40.50.10330 33 289 4.0E-85 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 SJPD1_0807 e474c1dc76556f0050bf985dd9235d89 292 SUPERFAMILY SSF111331 15 290 6.54E-81 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily SJPD1_0807 e474c1dc76556f0050bf985dd9235d89 292 Hamap MF_00361 NAD kinase [nadK]. 14 289 31.6 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 SJPD1_0807 e474c1dc76556f0050bf985dd9235d89 292 Pfam PF01513 ATP-NAD kinase 69 273 3.0E-49 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 SJPD1_0807 e474c1dc76556f0050bf985dd9235d89 292 Gene3D G3DSA:2.60.200.30 134 266 4.0E-85 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 44 55 - T 13-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 TIGRFAM TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB 18 468 3.9E-170 T 13-10-2018 IPR005980 Nitrogenase cofactor biosynthesis protein NifB GO:0009108|GO:0009399 SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 SUPERFAMILY SSF102114 34 264 4.19E-34 T 13-10-2018 SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 Pfam PF04055 Radical SAM superfamily 44 225 3.6E-25 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 371 461 1.2E-11 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 Gene3D G3DSA:3.30.420.130 356 472 5.1E-20 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 SMART SM00729 38 267 0.0031 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 SUPERFAMILY SSF53146 359 461 4.32E-21 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_1227 7d5d8bb99d04627f8564cf8e342e3c5a 476 Gene3D G3DSA:3.20.20.70 31 331 6.4E-33 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0916 39ae61829bd6b0d20f3f1abe19f70d1e 533 Gene3D G3DSA:1.10.287.950 201 533 1.8E-56 T 13-10-2018 SJPD1_0916 39ae61829bd6b0d20f3f1abe19f70d1e 533 SMART SM00283 270 531 3.2E-44 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0916 39ae61829bd6b0d20f3f1abe19f70d1e 533 SUPERFAMILY SSF58104 223 532 1.7E-53 T 13-10-2018 SJPD1_0916 39ae61829bd6b0d20f3f1abe19f70d1e 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 349 468 4.6E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1342 0f3121f4f87189b52c0275129f6e36e7 474 Pfam PF02321 Outer membrane efflux protein 275 456 2.8E-26 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1342 0f3121f4f87189b52c0275129f6e36e7 474 Pfam PF02321 Outer membrane efflux protein 61 248 3.6E-25 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1342 0f3121f4f87189b52c0275129f6e36e7 474 Gene3D G3DSA:1.20.1600.10 50 462 4.7E-121 T 13-10-2018 SJPD1_1342 0f3121f4f87189b52c0275129f6e36e7 474 Gene3D G3DSA:2.20.200.10 96 350 4.7E-121 T 13-10-2018 SJPD1_1342 0f3121f4f87189b52c0275129f6e36e7 474 SUPERFAMILY SSF56954 3 463 1.7E-104 T 13-10-2018 SJPD1_1342 0f3121f4f87189b52c0275129f6e36e7 474 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 461 1.1E-112 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 Pfam PF00117 Glutamine amidotransferase class-I 4 187 1.6E-53 T 13-10-2018 IPR017926 Glutamine amidotransferase SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 6.3E-7 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 6.3E-7 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 188 4.6E-76 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00097 Anthranilate synthase component II signature 120 132 9.9E-35 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00097 Anthranilate synthase component II signature 74 85 9.9E-35 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00097 Anthranilate synthase component II signature 2 16 9.9E-35 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00097 Anthranilate synthase component II signature 99 107 9.9E-35 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00097 Anthranilate synthase component II signature 166 179 9.9E-35 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00097 Anthranilate synthase component II signature 47 56 9.9E-35 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 SUPERFAMILY SSF52317 1 188 5.5E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 1.7E-14 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.7E-14 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.7E-14 T 13-10-2018 SJPD1_2083 37944e0ad9860cc8c8ca218005e14ddc 189 Gene3D G3DSA:3.40.50.880 1 188 8.0E-65 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1191 fdf49497b6a7007489629f6dc73aeeb4 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 6 154 4.7E-51 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC SJPD1_1191 fdf49497b6a7007489629f6dc73aeeb4 159 PIRSF PIRSF006181 1 158 3.0E-55 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC SJPD1_1191 fdf49497b6a7007489629f6dc73aeeb4 159 Pfam PF04073 Aminoacyl-tRNA editing domain 33 145 2.4E-24 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1191 fdf49497b6a7007489629f6dc73aeeb4 159 Gene3D G3DSA:3.90.960.10 2 158 7.9E-48 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1191 fdf49497b6a7007489629f6dc73aeeb4 159 SUPERFAMILY SSF55826 6 153 1.2E-37 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_0282 46a1fa3f9d2d09aa9e4395841c5c680e 330 Gene3D G3DSA:3.40.50.10800 8 311 2.0E-91 T 13-10-2018 SJPD1_0282 46a1fa3f9d2d09aa9e4395841c5c680e 330 Gene3D G3DSA:3.40.50.10800 197 281 2.0E-91 T 13-10-2018 SJPD1_0282 46a1fa3f9d2d09aa9e4395841c5c680e 330 Pfam PF02445 Quinolinate synthetase A protein 9 329 1.2E-97 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 SJPD1_0282 46a1fa3f9d2d09aa9e4395841c5c680e 330 SUPERFAMILY SSF142754 6 330 3.27E-93 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 SJPD1_0282 46a1fa3f9d2d09aa9e4395841c5c680e 330 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 4 330 6.5E-102 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 SJPD1_0282 46a1fa3f9d2d09aa9e4395841c5c680e 330 Gene3D G3DSA:3.40.50.10800 87 329 2.0E-91 T 13-10-2018 SJPD1_0353 cd8135a0b3e5906726371d8e82545bb2 377 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 373 4.3E-195 T 13-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 SJPD1_0353 cd8135a0b3e5906726371d8e82545bb2 377 PIRSF PIRSF000390 1 377 5.5E-103 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_0353 cd8135a0b3e5906726371d8e82545bb2 377 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 30 371 1.4E-79 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_0353 cd8135a0b3e5906726371d8e82545bb2 377 SUPERFAMILY SSF53383 2 374 7.01E-97 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0353 cd8135a0b3e5906726371d8e82545bb2 377 Gene3D G3DSA:3.90.1150.10 250 374 3.1E-24 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_0353 cd8135a0b3e5906726371d8e82545bb2 377 Gene3D G3DSA:3.40.640.10 1 249 1.5E-76 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1071 a083805333b4e5db2b96612f59626ebd 282 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 165 251 4.8E-19 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain SJPD1_1071 a083805333b4e5db2b96612f59626ebd 282 Gene3D G3DSA:3.10.50.40 152 255 8.1E-31 T 13-10-2018 SJPD1_1071 a083805333b4e5db2b96612f59626ebd 282 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 42 157 2.1E-29 T 13-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 SJPD1_1071 a083805333b4e5db2b96612f59626ebd 282 Gene3D G3DSA:1.10.287.460 40 150 9.6E-24 T 13-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 SJPD1_1071 a083805333b4e5db2b96612f59626ebd 282 SUPERFAMILY SSF54534 47 253 2.75E-51 T 13-10-2018 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Gene3D G3DSA:3.30.70.270 584 765 5.8E-57 T 13-10-2018 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SMART SM00086 533 575 1.1E-6 T 13-10-2018 IPR001610 PAC motif SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Pfam PF00989 PAS fold 455 571 6.7E-12 T 13-10-2018 IPR013767 PAS fold GO:0006355 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SMART SM00091 454 520 3.0E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Gene3D G3DSA:3.40.190.10 9 234 1.3E-73 T 13-10-2018 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SUPERFAMILY SSF55785 460 577 1.68E-23 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Pfam PF13185 GAF domain 318 441 8.0E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SMART SM00267 575 761 1.1E-55 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 450 580 1.7E-25 T 13-10-2018 IPR000014 PAS domain SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SMART SM00065 298 450 2.8E-4 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SUPERFAMILY SSF55073 591 762 8.63E-46 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SUPERFAMILY SSF53850 11 239 2.47E-51 T 13-10-2018 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SMART SM00062 18 238 4.6E-33 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Gene3D G3DSA:3.30.450.20 453 583 1.0E-26 T 13-10-2018 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 583 759 3.5E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Pfam PF00990 Diguanylate cyclase, GGDEF domain 586 757 5.6E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 19 236 2.0E-43 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Gene3D G3DSA:3.30.450.40 298 452 6.5E-21 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 SUPERFAMILY SSF55781 272 441 7.2E-21 T 13-10-2018 SJPD1_0329 9a81cf50816916776485430c840a4a3f 765 Gene3D G3DSA:3.40.190.10 104 197 1.3E-73 T 13-10-2018 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 Pfam PF08212 Lipocalin-like domain 30 168 3.6E-49 T 13-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 SUPERFAMILY SSF50814 11 168 3.74E-47 T 13-10-2018 IPR012674 Calycin SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PIRSF PIRSF036893 1 169 1.5E-54 T 13-10-2018 IPR022271 Lipocalin, ApoD type SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 Gene3D G3DSA:2.40.128.20 15 169 1.1E-57 T 13-10-2018 IPR012674 Calycin SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 115 123 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 66 75 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 130 141 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 157 167 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 30 44 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 47 63 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 PRINTS PR01171 Bacterial lipocalin signature 98 112 5.8E-30 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 SJPD1_0557 9f4dc530ff5ddbd8d13f355c55507687 169 ProSitePatterns PS00213 Lipocalin signature. 31 42 - T 13-10-2018 IPR022272 Lipocalin family conserved site SJPD1_0351 af59bed0d0a9e3c388c2bb5c2c6a79a4 309 Pfam PF00535 Glycosyl transferase family 2 7 147 2.0E-25 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_0351 af59bed0d0a9e3c388c2bb5c2c6a79a4 309 Gene3D G3DSA:3.90.550.10 2 228 3.2E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0351 af59bed0d0a9e3c388c2bb5c2c6a79a4 309 SUPERFAMILY SSF53448 5 256 2.6E-34 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 SUPERFAMILY SSF82714 195 277 5.36E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 Pfam PF00873 AcrB/AcrD/AcrF family 15 522 2.3E-78 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 Gene3D G3DSA:3.30.70.1430 49 142 2.1E-118 T 13-10-2018 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 SUPERFAMILY SSF82866 314 516 1.7E-36 T 13-10-2018 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 SUPERFAMILY SSF82693 55 143 7.06E-18 T 13-10-2018 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 Gene3D G3DSA:3.30.2090.10 191 287 2.1E-118 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 PRINTS PR00702 Acriflavin resistance protein family signature 353 376 3.0E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 3.0E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 PRINTS PR00702 Acriflavin resistance protein family signature 407 431 3.0E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 3.0E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 PRINTS PR00702 Acriflavin resistance protein family signature 489 512 3.0E-27 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 Gene3D G3DSA:1.20.1640.10 22 523 2.1E-118 T 13-10-2018 SJPD1_0735 b0a6cc95f123912898e862600ee37c4d 530 Gene3D G3DSA:3.30.70.1320 143 347 2.1E-118 T 13-10-2018 SJPD1_1303 2af8f052948b8bddba2c0f7806d01b1d 141 Gene3D G3DSA:3.30.70.20 2 34 3.2E-5 T 13-10-2018 SJPD1_1303 2af8f052948b8bddba2c0f7806d01b1d 141 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 50 61 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1303 2af8f052948b8bddba2c0f7806d01b1d 141 Gene3D G3DSA:3.30.70.20 35 91 1.2E-5 T 13-10-2018 SJPD1_1303 2af8f052948b8bddba2c0f7806d01b1d 141 Pfam PF13187 4Fe-4S dicluster domain 15 65 7.6E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1303 2af8f052948b8bddba2c0f7806d01b1d 141 SUPERFAMILY SSF54862 8 130 1.51E-15 T 13-10-2018 SJPD1_1303 2af8f052948b8bddba2c0f7806d01b1d 141 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 15 26 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0619 1c66d6bb8003f454d5525c9f484d54f6 284 Pfam PF02195 ParB-like nuclease domain 35 123 8.2E-25 T 13-10-2018 IPR003115 ParB/Sulfiredoxin SJPD1_0619 1c66d6bb8003f454d5525c9f484d54f6 284 Gene3D G3DSA:3.90.1530.30 47 109 1.3E-24 T 13-10-2018 SJPD1_0619 1c66d6bb8003f454d5525c9f484d54f6 284 Gene3D G3DSA:1.10.10.2830 111 223 1.4E-31 T 13-10-2018 SJPD1_0619 1c66d6bb8003f454d5525c9f484d54f6 284 SUPERFAMILY SSF110849 33 169 4.81E-34 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily SJPD1_0619 1c66d6bb8003f454d5525c9f484d54f6 284 SMART SM00470 34 123 2.4E-32 T 13-10-2018 IPR003115 ParB/Sulfiredoxin SJPD1_0619 1c66d6bb8003f454d5525c9f484d54f6 284 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 33 205 9.5E-55 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 SJPD1_0292 5c6ae82bf2acf77e0bea52e05b2441ed 125 Pfam PF02033 Ribosome-binding factor A 8 110 1.3E-12 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 SJPD1_0292 5c6ae82bf2acf77e0bea52e05b2441ed 125 SUPERFAMILY SSF89919 7 101 1.3E-15 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily SJPD1_0292 5c6ae82bf2acf77e0bea52e05b2441ed 125 ProSitePatterns PS01319 Ribosome-binding factor A signature. 76 97 - T 13-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 SJPD1_0292 5c6ae82bf2acf77e0bea52e05b2441ed 125 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 5 115 2.4E-17 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 SJPD1_0292 5c6ae82bf2acf77e0bea52e05b2441ed 125 Gene3D G3DSA:3.30.300.20 4 119 8.0E-14 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_1005 48e057780a63b11110dc1e86f6becc44 421 SUPERFAMILY SSF81648 243 389 1.27E-34 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_1005 48e057780a63b11110dc1e86f6becc44 421 SUPERFAMILY SSF81342 12 289 5.65E-82 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_1005 48e057780a63b11110dc1e86f6becc44 421 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 287 396 9.5E-27 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_1005 48e057780a63b11110dc1e86f6becc44 421 Gene3D G3DSA:1.20.810.10 2 419 1.1E-130 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 SJPD1_1005 48e057780a63b11110dc1e86f6becc44 421 Pfam PF00033 Cytochrome b/b6/petB 29 215 1.0E-57 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_2390 227056083e1dcac0f7766fe5b19a106a 221 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 3 220 7.4E-88 T 13-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO SJPD1_2390 227056083e1dcac0f7766fe5b19a106a 221 SUPERFAMILY SSF46626 15 221 1.1E-20 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2390 227056083e1dcac0f7766fe5b19a106a 221 Gene3D G3DSA:1.10.760.10 37 221 3.5E-48 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2390 227056083e1dcac0f7766fe5b19a106a 221 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 220 8.9E-84 T 13-10-2018 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO SJPD1_1070 ed3a6e91ade23ae0162841d2e00008ac 689 Gene3D G3DSA:1.10.1130.10 390 542 5.3E-6 T 13-10-2018 SJPD1_1070 ed3a6e91ade23ae0162841d2e00008ac 689 Gene3D G3DSA:3.90.10.10 279 365 4.5E-5 T 13-10-2018 SJPD1_1070 ed3a6e91ade23ae0162841d2e00008ac 689 Gene3D G3DSA:1.10.1130.10 133 168 1.1E-5 T 13-10-2018 SJPD1_1070 ed3a6e91ade23ae0162841d2e00008ac 689 Hamap MF_02023 Dissimilatory sulfite reductase. 2 688 50.161 T 13-10-2018 IPR032897 Dissimilatory sulfite reductase GO:0016002|GO:0020037|GO:0070814 SJPD1_1070 ed3a6e91ade23ae0162841d2e00008ac 689 SUPERFAMILY SSF48695 135 685 1.37E-47 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 158 1.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 68 79 1.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 120 128 1.1E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 227 7.6E-36 T 13-10-2018 SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 Gene3D G3DSA:3.40.50.720 1 229 6.7E-54 T 13-10-2018 SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 SUPERFAMILY SSF51735 3 227 4.33E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 8.7E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 212 8.7E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 8.7E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 176 8.7E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 8.7E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2814 db0bb0acc28d9f491a15f7129341d3fe 231 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 8.7E-31 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1815 204284d443228ee69d1294271d93202a 206 Pfam PF00877 NlpC/P60 family 52 169 1.1E-4 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain SJPD1_1815 204284d443228ee69d1294271d93202a 206 Gene3D G3DSA:3.90.1720.10 34 194 9.7E-11 T 13-10-2018 SJPD1_1815 204284d443228ee69d1294271d93202a 206 SUPERFAMILY SSF54001 52 176 7.26E-5 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 Pfam PF00448 SRP54-type protein, GTPase domain 219 411 7.9E-41 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 2 307 1.8E-69 T 13-10-2018 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 SMART SM00962 218 412 3.3E-62 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 Gene3D G3DSA:3.40.50.300 213 400 1.6E-66 T 13-10-2018 SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 SUPERFAMILY SSF52540 215 412 8.23E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 SMART SM00382 217 375 1.3E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0343 267e8de9c14e60554a903112d9fb18e0 426 Gene3D G3DSA:1.20.120.1380 163 402 1.6E-66 T 13-10-2018 SJPD1_2574 a8538931198755460a743f937203ba3f 224 SUPERFAMILY SSF53335 6 117 8.06E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2574 a8538931198755460a743f937203ba3f 224 Pfam PF13649 Methyltransferase domain 46 130 1.9E-15 T 13-10-2018 SJPD1_2574 a8538931198755460a743f937203ba3f 224 Gene3D G3DSA:3.40.50.150 6 159 3.1E-25 T 13-10-2018 SJPD1_0644 cad24904acecba845de2ef9092cf4987 119 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 84 108 - T 13-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site SJPD1_0644 cad24904acecba845de2ef9092cf4987 119 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 79 114 4.6E-12 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 SJPD1_0644 cad24904acecba845de2ef9092cf4987 119 Gene3D G3DSA:1.20.120.910 1 119 5.5E-33 T 13-10-2018 SJPD1_0644 cad24904acecba845de2ef9092cf4987 119 SUPERFAMILY SSF109635 1 80 4.32E-16 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily SJPD1_0644 cad24904acecba845de2ef9092cf4987 119 SUPERFAMILY SSF57716 81 116 1.3E-8 T 13-10-2018 SJPD1_0167 858f162a7c71829b5d826e8a63540218 405 SUPERFAMILY SSF56935 21 405 4.4E-70 T 13-10-2018 SJPD1_0167 858f162a7c71829b5d826e8a63540218 405 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 15 405 7.0E-55 T 13-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) SJPD1_0167 858f162a7c71829b5d826e8a63540218 405 Gene3D G3DSA:2.40.160.60 21 405 3.6E-85 T 13-10-2018 SJPD1_1208 006d13c26c4d7d44af2c2e4382145481 359 Pfam PF12704 MacB-like periplasmic core domain 15 204 7.7E-8 T 13-10-2018 IPR025857 MacB-like periplasmic core domain SJPD1_1208 006d13c26c4d7d44af2c2e4382145481 359 Pfam PF02687 FtsX-like permease family 258 350 6.6E-13 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 Gene3D G3DSA:3.40.47.10 1 212 1.5E-23 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 220 327 1.3E-32 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 SUPERFAMILY SSF53901 5 210 6.06E-23 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 SUPERFAMILY SSF53901 185 365 5.77E-48 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 SMART SM00825 Beta-ketoacyl synthase 17 365 1.1E-7 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 Gene3D G3DSA:3.40.47.10 222 364 4.5E-44 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 SJPD1_2619 7834e529caad8f213e723b6f60991f8f 369 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 72 210 5.6E-16 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 SUPERFAMILY SSF81338 4 257 1.1E-61 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 PRINTS PR00783 Major intrinsic protein family signature 236 256 1.7E-38 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 PRINTS PR00783 Major intrinsic protein family signature 6 25 1.7E-38 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 PRINTS PR00783 Major intrinsic protein family signature 153 171 1.7E-38 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 PRINTS PR00783 Major intrinsic protein family signature 82 101 1.7E-38 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 PRINTS PR00783 Major intrinsic protein family signature 187 209 1.7E-38 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 PRINTS PR00783 Major intrinsic protein family signature 45 69 1.7E-38 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 TIGRFAM TIGR00861 MIP: MIP family channel proteins 10 253 1.8E-51 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 Pfam PF00230 Major intrinsic protein 3 253 7.7E-44 T 13-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 Gene3D G3DSA:1.20.1080.10 1 260 1.7E-74 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 SJPD1_0860 c0d20d27d35fd5146cf384ff2c0bfa14 271 ProSitePatterns PS00221 MIP family signature. 63 71 - T 13-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 SJPD1_1301 a0a78abd90ebdaa804b2109b1db05ae4 362 Pfam PF00374 Nickel-dependent hydrogenase 44 113 2.4E-7 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 SJPD1_1301 a0a78abd90ebdaa804b2109b1db05ae4 362 Gene3D G3DSA:1.10.645.20 5 362 1.6E-111 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1301 a0a78abd90ebdaa804b2109b1db05ae4 362 SUPERFAMILY SSF56762 20 362 1.7E-102 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1301 a0a78abd90ebdaa804b2109b1db05ae4 362 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 124 286 8.4E-46 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1301 a0a78abd90ebdaa804b2109b1db05ae4 362 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 288 362 2.9E-16 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2229 a009f0109b15d047231246db6c58d73f 320 Pfam PF00535 Glycosyl transferase family 2 8 129 2.4E-18 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2229 a009f0109b15d047231246db6c58d73f 320 SUPERFAMILY SSF53448 6 168 1.03E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2229 a009f0109b15d047231246db6c58d73f 320 Gene3D G3DSA:3.90.550.10 5 201 3.3E-22 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Gene3D G3DSA:3.90.1720.10 274 439 1.8E-43 T 13-10-2018 SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Pfam PF00877 NlpC/P60 family 299 379 1.0E-9 T 13-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 596 659 2.0E-18 T 13-10-2018 IPR039561 Peptidase M15C GO:0008233 SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Pfam PF12913 SH3 domain (SH3b1 type) 144 196 2.0E-24 T 13-10-2018 IPR039439 SH3b1 domain SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Pfam PF12912 NLPC_P60 stabilising domain, N term 9 121 2.6E-20 T 13-10-2018 IPR025606 NLPC/P60, N-terminal domain SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Gene3D G3DSA:3.30.1380.10 540 658 3.7E-15 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 SUPERFAMILY SSF55166 576 662 7.06E-19 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 SUPERFAMILY SSF54001 279 379 4.61E-12 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_1784 76c5eb39fa9f2685739e75be87d5ed0f 668 Pfam PF12914 SH3 domain of SH3b2 type 204 249 5.8E-9 T 13-10-2018 IPR026864 SH3b2-type SH3 domain SJPD1_2872 ad86922d606bc759682bac4e7930e372 233 SUPERFAMILY SSF53335 9 222 6.18E-21 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2872 ad86922d606bc759682bac4e7930e372 233 Pfam PF08241 Methyltransferase domain 42 134 2.8E-8 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 SJPD1_2872 ad86922d606bc759682bac4e7930e372 233 Gene3D G3DSA:3.40.50.150 7 215 2.4E-19 T 13-10-2018 SJPD1_2097 4c38940bd9457d6dd30242c84077f9d4 221 Gene3D G3DSA:3.40.50.360 1 184 3.6E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2097 4c38940bd9457d6dd30242c84077f9d4 221 Pfam PF03358 NADPH-dependent FMN reductase 1 148 2.2E-27 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SJPD1_2097 4c38940bd9457d6dd30242c84077f9d4 221 SUPERFAMILY SSF52218 1 183 1.71E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_0163 d8f3ed304464497ecf471db822fa791b 301 SUPERFAMILY SSF103481 44 143 1.57E-11 T 13-10-2018 SJPD1_0163 d8f3ed304464497ecf471db822fa791b 301 SUPERFAMILY SSF103481 186 288 1.44E-10 T 13-10-2018 SJPD1_0163 d8f3ed304464497ecf471db822fa791b 301 Pfam PF00892 EamA-like transporter family 149 282 3.1E-16 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0163 d8f3ed304464497ecf471db822fa791b 301 Pfam PF00892 EamA-like transporter family 11 140 2.2E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 PIRSF PIRSF000485 1 445 1.2E-166 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 442 44.053 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 Gene3D G3DSA:3.60.20.10 2 443 2.5E-152 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 Pfam PF00156 Phosphoribosyl transferase domain 262 372 4.1E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 442 1.4E-157 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 SUPERFAMILY SSF56235 2 222 6.86E-63 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 SUPERFAMILY SSF53271 238 443 1.99E-65 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 Pfam PF13537 Glutamine amidotransferase domain 71 199 1.5E-21 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain SJPD1_0207 144a461c499a96f854f8a8cd64493001 445 Gene3D G3DSA:3.40.50.2020 262 426 2.5E-152 T 13-10-2018 SJPD1_0015 f2641049b3070de7860f54bde9bd88fd 169 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 7 160 7.8E-56 T 13-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 SJPD1_0015 f2641049b3070de7860f54bde9bd88fd 169 SUPERFAMILY SSF52016 3 163 1.14E-45 T 13-10-2018 SJPD1_0015 f2641049b3070de7860f54bde9bd88fd 169 Gene3D G3DSA:3.20.19.10 1 169 6.2E-55 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 SJPD1_0015 f2641049b3070de7860f54bde9bd88fd 169 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 5 164 34.346 T 13-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 SJPD1_0015 f2641049b3070de7860f54bde9bd88fd 169 Pfam PF00694 Aconitase C-terminal domain 22 102 4.1E-21 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 SJPD1_1146 f33c32fdba937c4f95693aa0370e1307 303 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 1.1E-4 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site SJPD1_1146 f33c32fdba937c4f95693aa0370e1307 303 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 26 1.1E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site SJPD1_1251 32553eb088a501a275ef6f5c021e8783 112 Gene3D G3DSA:3.10.20.30 1 111 8.7E-10 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_0963 ae7948158d971a248b3c09871e99b8b2 426 Pfam PF07804 HipA-like C-terminal domain 135 372 7.0E-43 T 13-10-2018 IPR012893 HipA-like, C-terminal SJPD1_0963 ae7948158d971a248b3c09871e99b8b2 426 Pfam PF13657 HipA N-terminal domain 2 96 1.4E-15 T 13-10-2018 IPR017508 HipA, N-terminal subdomain 1 SJPD1_0963 ae7948158d971a248b3c09871e99b8b2 426 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 2 96 3.3E-16 T 13-10-2018 IPR017508 HipA, N-terminal subdomain 1 SJPD1_1806 5c4918069b78110f4c950079cc01f9c8 99 Pfam PF01883 Iron-sulfur cluster assembly protein 5 77 1.0E-19 T 13-10-2018 IPR002744 MIP18 family-like SJPD1_1806 5c4918069b78110f4c950079cc01f9c8 99 SUPERFAMILY SSF117916 3 96 3.92E-29 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_1806 5c4918069b78110f4c950079cc01f9c8 99 Gene3D G3DSA:3.30.300.130 3 98 2.8E-30 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily SJPD1_1535 0312c93e74ef7cb842f4e1724093fef1 192 Gene3D G3DSA:3.40.50.150 1 192 2.3E-61 T 13-10-2018 SJPD1_1535 0312c93e74ef7cb842f4e1724093fef1 192 Pfam PF13847 Methyltransferase domain 32 107 5.2E-8 T 13-10-2018 IPR025714 Methyltransferase domain SJPD1_1535 0312c93e74ef7cb842f4e1724093fef1 192 SUPERFAMILY SSF53335 17 163 1.84E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1535 0312c93e74ef7cb842f4e1724093fef1 192 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 15 135 1.2E-34 T 13-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 Pfam PF07670 Nucleoside recognition 515 669 4.3E-30 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 Pfam PF07670 Nucleoside recognition 354 447 4.0E-14 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 Pfam PF02421 Ferrous iron transport protein B 5 157 3.3E-65 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 Pfam PF07664 Ferrous iron transport protein B C terminus 458 509 2.4E-14 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 666 4.2E-190 T 13-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 Gene3D G3DSA:3.40.50.300 5 186 4.8E-45 T 13-10-2018 SJPD1_1957 49fdc63ebb25475ff2cfceb72b48dffe 698 SUPERFAMILY SSF52540 5 163 8.07E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1299 12772c595db53d391c9b89596f2e3a92 115 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 19.228 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_1299 12772c595db53d391c9b89596f2e3a92 115 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 13-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site SJPD1_1299 12772c595db53d391c9b89596f2e3a92 115 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 8.0E-29 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_1299 12772c595db53d391c9b89596f2e3a92 115 PIRSF PIRSF004761 1 115 5.9E-31 T 13-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 SJPD1_1299 12772c595db53d391c9b89596f2e3a92 115 Gene3D G3DSA:3.30.2320.80 1 115 7.9E-32 T 13-10-2018 SJPD1_1126 9e03caf9fd7275a31e6dd26b511a9bfb 189 Gene3D G3DSA:3.40.50.180 1 186 2.8E-46 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal SJPD1_1126 9e03caf9fd7275a31e6dd26b511a9bfb 189 Pfam PF01339 CheB methylesterase 6 183 1.1E-46 T 13-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 SJPD1_1126 9e03caf9fd7275a31e6dd26b511a9bfb 189 SUPERFAMILY SSF52738 4 186 1.02E-45 T 13-10-2018 IPR035909 Methylesterase CheB, C-terminal SJPD1_2760 daa9f4557f0fe6120088064b181d3bbd 68 Pfam PF02597 ThiS family 4 67 3.8E-8 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 SJPD1_2760 daa9f4557f0fe6120088064b181d3bbd 68 SUPERFAMILY SSF54285 2 66 6.38E-13 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp SJPD1_2760 daa9f4557f0fe6120088064b181d3bbd 68 Gene3D G3DSA:3.10.20.30 1 68 1.1E-22 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_2760 daa9f4557f0fe6120088064b181d3bbd 68 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 67 3.0E-17 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 Gene3D G3DSA:3.40.1190.20 207 465 1.3E-65 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 4 197 2.4E-37 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 Gene3D G3DSA:3.40.50.10260 2 204 2.0E-49 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 4 197 18.57 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 SUPERFAMILY SSF64153 11 205 5.36E-46 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 PIRSF PIRSF017184 1 463 9.9E-98 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 208 462 7.5E-45 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 Pfam PF01256 Carbohydrate kinase 234 458 1.7E-40 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 Pfam PF03853 YjeF-related protein N-terminus 24 176 1.3E-31 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 408 418 - T 13-10-2018 IPR017953 Carbohydrate kinase, predicted, conserved site SJPD1_2674 322992e376e08d22a91eb76750c46fd4 465 SUPERFAMILY SSF53613 215 462 5.07E-45 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 Gene3D G3DSA:1.20.20.10 22 99 1.3E-24 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 38 94 8.6E-16 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 Pfam PF00137 ATP synthase subunit C 29 92 3.5E-16 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 ProSitePatterns PS00605 ATP synthase c subunit signature. 58 79 - T 13-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 SUPERFAMILY SSF81333 23 97 1.02E-20 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 PRINTS PR00124 ATP synthase C subunit signature 68 93 1.4E-15 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 PRINTS PR00124 ATP synthase C subunit signature 51 66 1.4E-15 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 PRINTS PR00124 ATP synthase C subunit signature 30 49 1.4E-15 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0718 0bd3a648007fe6782d04d4be3f4f94e1 100 Hamap MF_01396 ATP synthase subunit c [atpH]. 28 93 14.978 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1653 63dbc5524596880aba02ae1f6adaf397 354 Pfam PF00589 Phage integrase family 169 340 9.0E-33 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_1653 63dbc5524596880aba02ae1f6adaf397 354 SUPERFAMILY SSF56349 85 347 4.12E-41 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_1653 63dbc5524596880aba02ae1f6adaf397 354 Gene3D G3DSA:1.10.443.10 167 346 3.2E-40 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_1653 63dbc5524596880aba02ae1f6adaf397 354 Hamap MF_02054 Tyrosine recombinase XerH [xerH]. 1 350 47.196 T 13-10-2018 IPR033683 Tyrosine recombinase XerH SJPD1_1174 62562971f371c615e942d0a7974be59b 451 SUPERFAMILY SSF52540 68 288 7.19E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1174 62562971f371c615e942d0a7974be59b 451 Gene3D G3DSA:3.40.50.300 66 284 1.7E-42 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 Pfam PF13481 AAA domain 70 222 6.4E-13 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 Gene3D G3DSA:3.30.230.10 324 451 6.8E-16 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_1174 62562971f371c615e942d0a7974be59b 451 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 447 1.2E-184 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 Pfam PF13541 Subunit ChlI of Mg-chelatase 346 427 4.3E-8 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 SMART SM00382 90 244 5.4E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1174 62562971f371c615e942d0a7974be59b 451 SUPERFAMILY SSF54211 255 449 5.69E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_1174 62562971f371c615e942d0a7974be59b 451 Hamap MF_01498 DNA repair protein RadA [radA]. 21 449 41.565 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 213 241 2.5E-88 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 124 141 2.5E-88 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 248 274 2.5E-88 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 321 344 2.5E-88 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 10 34 2.5E-88 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 82 110 2.5E-88 T 13-10-2018 SJPD1_1174 62562971f371c615e942d0a7974be59b 451 PRINTS PR01874 DNA repair protein radA signature 174 198 2.5E-88 T 13-10-2018 SJPD1_1951 4b9f9f4d614339e7104a508623820851 547 Gene3D G3DSA:1.20.1730.10 29 545 6.3E-56 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily SJPD1_1951 4b9f9f4d614339e7104a508623820851 547 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 60 466 4.4E-59 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 SJPD1_1951 4b9f9f4d614339e7104a508623820851 547 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 175 200 - T 13-10-2018 IPR018212 Sodium/solute symporter, conserved site SJPD1_1951 4b9f9f4d614339e7104a508623820851 547 Pfam PF00474 Sodium:solute symporter family 60 466 9.5E-110 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 SJPD1_0089 08fc8dfdfc2c334a79c0cb6711d44b72 302 Gene3D G3DSA:3.30.2350.10 62 291 1.6E-50 T 13-10-2018 SJPD1_0089 08fc8dfdfc2c334a79c0cb6711d44b72 302 SUPERFAMILY SSF55120 68 279 1.77E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0089 08fc8dfdfc2c334a79c0cb6711d44b72 302 Pfam PF00849 RNA pseudouridylate synthase 79 226 7.1E-28 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0089 08fc8dfdfc2c334a79c0cb6711d44b72 302 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 116 130 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 PRINTS PR00415 Aconitase family signature 124 139 2.5E-17 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 PRINTS PR00415 Aconitase family signature 348 361 2.5E-17 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 PRINTS PR00415 Aconitase family signature 200 213 2.5E-17 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 PRINTS PR00415 Aconitase family signature 110 123 2.5E-17 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 3 412 3.8E-151 T 13-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 Gene3D G3DSA:3.30.499.10 269 416 2.9E-51 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 SUPERFAMILY SSF53732 5 415 1.03E-129 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 Gene3D G3DSA:3.30.499.20 3 266 1.2E-93 T 13-10-2018 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 Pfam PF00330 Aconitase family (aconitate hydratase) 33 407 9.3E-91 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 1 415 43.768 T 13-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_0014 588b027e4b5bd106d7c4de562a3b49b0 416 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 412 4.8E-153 T 13-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 SJPD1_0637 1e4d332d5e2002e17677d127f278065b 254 Gene3D G3DSA:3.40.50.620 4 251 2.4E-46 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0637 1e4d332d5e2002e17677d127f278065b 254 PIRSF PIRSF004976 3 250 1.1E-60 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 SJPD1_0637 1e4d332d5e2002e17677d127f278065b 254 SUPERFAMILY SSF52402 6 223 3.09E-45 T 13-10-2018 SJPD1_0637 1e4d332d5e2002e17677d127f278065b 254 Pfam PF01171 PP-loop family 27 196 3.3E-21 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 SUPERFAMILY SSF110324 2 83 7.67E-32 T 13-10-2018 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 13-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 6.3E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 Gene3D G3DSA:2.40.50.100 20 85 5.7E-29 T 13-10-2018 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 27.006 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 2.0E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 2.0E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 2.0E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 4.0E-14 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0613 b0e31db726938c67232a15d01af67033 86 Pfam PF01016 Ribosomal L27 protein 2 81 5.7E-36 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1800 fddd4ab6b45b5960f58c4deff4cddb47 254 Pfam PF01435 Peptidase family M48 43 242 4.5E-41 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 SJPD1_1800 fddd4ab6b45b5960f58c4deff4cddb47 254 Gene3D G3DSA:3.30.2010.10 39 120 6.9E-27 T 13-10-2018 SJPD1_1800 fddd4ab6b45b5960f58c4deff4cddb47 254 SUPERFAMILY SSF103473 8 186 2.49E-6 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 SMART SM00388 205 263 9.5E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 SUPERFAMILY SSF158472 154 201 2.09E-6 T 13-10-2018 SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 Pfam PF00512 His Kinase A (phospho-acceptor) domain 205 262 7.3E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 Gene3D G3DSA:3.30.565.10 268 405 6.9E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 SMART SM00304 152 204 2.7E-5 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 SUPERFAMILY SSF55874 266 398 1.06E-19 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 Gene3D G3DSA:1.10.287.130 157 264 8.2E-21 T 13-10-2018 SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 SUPERFAMILY SSF47384 188 262 1.02E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 308 392 1.6E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1922 8d67e0c5ba32ae142ffd1d28cd100c37 405 SMART SM00387 305 405 9.0E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0939 51caa78b2acde81e7951cc9a7d476eb8 102 Pfam PF11171 Protein of unknown function (DUF2958) 3 92 2.7E-18 T 13-10-2018 IPR021341 Protein of unknown function DUF2958 SJPD1_2513 e9554e5a7a067bdb5e2e82f016ecc40d 533 Pfam PF02653 Branched-chain amino acid transport system / permease component 245 515 3.0E-52 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 SJPD1_2513 e9554e5a7a067bdb5e2e82f016ecc40d 533 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 242 529 3.9E-132 T 13-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 Gene3D G3DSA:1.10.10.10 2 150 5.3E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 SMART SM00347 37 137 1.1E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 Pfam PF01047 MarR family 44 100 4.2E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 78 93 5.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 127 147 5.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 97 113 5.4E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2595 ed52036f73967af19af92ac8b8253a67 151 SUPERFAMILY SSF46785 13 149 2.64E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0415 99b67062ad3937b57e23b9472619641f 299 SUPERFAMILY SSF88713 103 284 1.02E-8 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 SJPD1_0415 99b67062ad3937b57e23b9472619641f 299 Gene3D G3DSA:3.20.20.370 101 298 6.7E-12 T 13-10-2018 SJPD1_0415 99b67062ad3937b57e23b9472619641f 299 Pfam PF01522 Polysaccharide deacetylase 105 238 1.3E-5 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 SJPD1_2575 10dc0cf4bd79ce13700029b42729e00c 69 SUPERFAMILY SSF50331 1 68 1.12E-13 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2575 10dc0cf4bd79ce13700029b42729e00c 69 Pfam PF03459 TOBE domain 5 65 3.6E-7 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_2575 10dc0cf4bd79ce13700029b42729e00c 69 Gene3D G3DSA:2.40.50.100 1 67 5.4E-17 T 13-10-2018 SJPD1_0265 6d7449705c37b76541a43355c1e5a56d 330 Gene3D G3DSA:3.40.718.10 1 329 3.3E-122 T 13-10-2018 SJPD1_0265 6d7449705c37b76541a43355c1e5a56d 330 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 3 326 5.2E-115 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 SJPD1_0265 6d7449705c37b76541a43355c1e5a56d 330 Pfam PF02504 Fatty acid synthesis protein 3 317 6.6E-111 T 13-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 SJPD1_0265 6d7449705c37b76541a43355c1e5a56d 330 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 330 135.34 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 SJPD1_0265 6d7449705c37b76541a43355c1e5a56d 330 PIRSF PIRSF002465 1 330 1.0E-122 T 13-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 SJPD1_0265 6d7449705c37b76541a43355c1e5a56d 330 SUPERFAMILY SSF53659 1 325 4.93E-95 T 13-10-2018 SJPD1_2380 90b9f14d9f9490dba28638f417bc546f 130 Pfam PF00380 Ribosomal protein S9/S16 8 130 1.4E-40 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 SJPD1_2380 90b9f14d9f9490dba28638f417bc546f 130 Gene3D G3DSA:3.30.230.10 1 130 5.3E-45 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_2380 90b9f14d9f9490dba28638f417bc546f 130 SUPERFAMILY SSF54211 4 130 1.33E-40 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_2380 90b9f14d9f9490dba28638f417bc546f 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 29.312 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid SJPD1_2380 90b9f14d9f9490dba28638f417bc546f 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 13-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 SJPD1_1738 f369a1c583f0c794c5d9b9cd4e32edec 183 Pfam PF12163 DNA replication regulator 1 179 3.6E-76 T 13-10-2018 IPR021011 DNA replication regulator, HobA SJPD1_1738 f369a1c583f0c794c5d9b9cd4e32edec 183 Gene3D G3DSA:3.40.50.11670 1 180 8.5E-62 T 13-10-2018 IPR038381 DNA replication regulator HobA superfamily SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 SUPERFAMILY SSF48300 4 60 1.7E-15 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 Gene3D G3DSA:3.30.1390.10 54 124 4.8E-30 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 58 124 1.7E-29 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 124 1.1E-48 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 48 8.1E-19 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 Gene3D G3DSA:1.20.5.710 3 53 2.3E-20 T 13-10-2018 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 59 124 1.0E-18 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 124 24.259 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0439 8bf21b816de4880f7258f94d0b762e5b 124 SUPERFAMILY SSF54736 53 124 3.31E-24 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like SJPD1_0990 a132e4a88e0b7b3086811e532ab4cbcf 395 Pfam PF02687 FtsX-like permease family 287 387 7.6E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 SJPD1_2477 216ef47d3187be53dc74e4f063d878c7 222 SMART SM00382 30 219 7.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2477 216ef47d3187be53dc74e4f063d878c7 222 Gene3D G3DSA:3.40.50.300 1 222 3.1E-62 T 13-10-2018 SJPD1_2477 216ef47d3187be53dc74e4f063d878c7 222 SUPERFAMILY SSF52540 1 220 4.34E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2477 216ef47d3187be53dc74e4f063d878c7 222 Pfam PF00005 ABC transporter 21 170 7.7E-35 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2477 216ef47d3187be53dc74e4f063d878c7 222 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2640 93eff570d4ea94f845b033fc47c497f3 428 SUPERFAMILY SSF47384 206 275 1.26E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2640 93eff570d4ea94f845b033fc47c497f3 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 329 420 6.6E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2640 93eff570d4ea94f845b033fc47c497f3 428 Gene3D G3DSA:3.30.565.10 286 424 2.6E-12 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2640 93eff570d4ea94f845b033fc47c497f3 428 SMART SM00387 323 424 1.1E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2640 93eff570d4ea94f845b033fc47c497f3 428 Gene3D G3DSA:1.10.287.130 169 273 7.5E-11 T 13-10-2018 SJPD1_2640 93eff570d4ea94f845b033fc47c497f3 428 SUPERFAMILY SSF55874 303 423 1.06E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1273 003adbeeb81f59af593e7320fa0ea6de 303 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 139 302 1.3E-49 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1273 003adbeeb81f59af593e7320fa0ea6de 303 SMART SM00267 132 303 2.2E-54 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1273 003adbeeb81f59af593e7320fa0ea6de 303 Pfam PF00990 Diguanylate cyclase, GGDEF domain 143 300 7.2E-45 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1273 003adbeeb81f59af593e7320fa0ea6de 303 Gene3D G3DSA:3.30.70.270 131 303 3.8E-54 T 13-10-2018 SJPD1_1273 003adbeeb81f59af593e7320fa0ea6de 303 SUPERFAMILY SSF55073 148 302 3.84E-45 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1324 706131a2718c1ecce35b8dff60b207f1 361 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 1 361 26.847 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1324 706131a2718c1ecce35b8dff60b207f1 361 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 12 183 2.8E-51 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1324 706131a2718c1ecce35b8dff60b207f1 361 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 184 355 7.1E-14 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1324 706131a2718c1ecce35b8dff60b207f1 361 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 6 180 6.6E-41 T 13-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1324 706131a2718c1ecce35b8dff60b207f1 361 Gene3D G3DSA:3.30.2350.20 2 182 2.1E-50 T 13-10-2018 SJPD1_1324 706131a2718c1ecce35b8dff60b207f1 361 SUPERFAMILY SSF55120 4 358 6.47E-85 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1292 178c44bed4ccf6533ad7ab54f04eb828 521 SUPERFAMILY SSF55729 10 144 1.03E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_1292 178c44bed4ccf6533ad7ab54f04eb828 521 Pfam PF00795 Carbon-nitrogen hydrolase 228 489 7.3E-36 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 SJPD1_1292 178c44bed4ccf6533ad7ab54f04eb828 521 Gene3D G3DSA:3.60.110.10 226 511 7.2E-59 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_1292 178c44bed4ccf6533ad7ab54f04eb828 521 Pfam PF00583 Acetyltransferase (GNAT) family 45 142 4.9E-8 T 13-10-2018 IPR000182 GNAT domain SJPD1_1292 178c44bed4ccf6533ad7ab54f04eb828 521 Gene3D G3DSA:3.40.630.30 7 223 6.1E-52 T 13-10-2018 SJPD1_1292 178c44bed4ccf6533ad7ab54f04eb828 521 SUPERFAMILY SSF56317 226 509 5.23E-60 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_1042 e8e0bd7fc42374645d68d49306e07e08 152 SUPERFAMILY SSF53163 1 141 6.28E-17 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily SJPD1_1042 e8e0bd7fc42374645d68d49306e07e08 152 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 138 3.0E-17 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1042 e8e0bd7fc42374645d68d49306e07e08 152 Pfam PF01750 Hydrogenase maturation protease 44 140 2.7E-5 T 13-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 SJPD1_1042 e8e0bd7fc42374645d68d49306e07e08 152 Gene3D G3DSA:3.40.50.1450 1 151 1.7E-42 T 13-10-2018 IPR023430 Peptidase HybD-like domain superfamily SJPD1_1870 1914da1aa47d03ed1647f4c670698dfa 290 SUPERFAMILY SSF103481 42 134 4.71E-11 T 13-10-2018 SJPD1_1870 1914da1aa47d03ed1647f4c670698dfa 290 SUPERFAMILY SSF103481 191 285 4.58E-10 T 13-10-2018 SJPD1_1870 1914da1aa47d03ed1647f4c670698dfa 290 Pfam PF00892 EamA-like transporter family 5 132 2.6E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1870 1914da1aa47d03ed1647f4c670698dfa 290 Pfam PF00892 EamA-like transporter family 142 281 8.4E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1742 e286ce65336026459eaa089d0c89a346 536 Pfam PF00999 Sodium/hydrogen exchanger family 9 373 4.0E-63 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SJPD1_1742 e286ce65336026459eaa089d0c89a346 536 Gene3D G3DSA:3.40.50.720 397 534 8.5E-28 T 13-10-2018 SJPD1_1742 e286ce65336026459eaa089d0c89a346 536 Pfam PF02254 TrkA-N domain 402 516 5.2E-22 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 SJPD1_1742 e286ce65336026459eaa089d0c89a346 536 SUPERFAMILY SSF51735 398 532 3.05E-28 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1742 e286ce65336026459eaa089d0c89a346 536 Gene3D G3DSA:1.20.1530.20 2 383 5.1E-82 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_1945 5a83759663bd58f2623b662676d64aef 256 Pfam PF03824 High-affinity nickel-transport protein 168 254 4.6E-7 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 SJPD1_1945 5a83759663bd58f2623b662676d64aef 256 Pfam PF03824 High-affinity nickel-transport protein 37 138 2.6E-15 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 SJPD1_0872 ab368560cc12ab74fb37800e02692374 223 Gene3D G3DSA:3.40.470.10 12 194 3.5E-10 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0923 575cb8665480d193eda3908c62d644e8 80 Pfam PF12844 Helix-turn-helix domain 16 75 2.9E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0923 575cb8665480d193eda3908c62d644e8 80 Gene3D G3DSA:1.10.260.40 3 80 4.9E-11 T 13-10-2018 SJPD1_0923 575cb8665480d193eda3908c62d644e8 80 SMART SM00530 16 74 0.0013 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0923 575cb8665480d193eda3908c62d644e8 80 SUPERFAMILY SSF47413 10 78 1.04E-9 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0575 7b439755751e391cc42e998117993d3e 411 SUPERFAMILY SSF56935 32 411 3.92E-5 T 13-10-2018 SJPD1_0575 7b439755751e391cc42e998117993d3e 411 Pfam PF05538 Campylobacter major outer membrane protein 1 383 2.9E-15 T 13-10-2018 IPR008439 Campylobacter major outer membrane SJPD1_0575 7b439755751e391cc42e998117993d3e 411 Gene3D G3DSA:2.40.160.10 33 411 1.9E-23 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 8.6E-18 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 Gene3D G3DSA:3.40.50.2300 1 121 3.4E-28 T 13-10-2018 SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 SMART SM00862 144 220 1.3E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 SUPERFAMILY SSF46894 129 221 1.76E-20 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 Gene3D G3DSA:1.10.10.10 122 223 3.2E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 SUPERFAMILY SSF52172 1 129 5.41E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 Pfam PF00072 Response regulator receiver domain 4 113 2.1E-20 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2641 f340c1567cf442a85b01c53c671255fb 223 SMART SM00448 2 113 2.6E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1232 fdceee2553e2dfca0d764c1ee2a45e85 139 Pfam PF00072 Response regulator receiver domain 12 120 1.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1232 fdceee2553e2dfca0d764c1ee2a45e85 139 SUPERFAMILY SSF52172 12 124 2.99E-31 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1232 fdceee2553e2dfca0d764c1ee2a45e85 139 Gene3D G3DSA:3.40.50.2300 5 127 8.3E-31 T 13-10-2018 SJPD1_1232 fdceee2553e2dfca0d764c1ee2a45e85 139 SMART SM00448 9 120 1.6E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1223 0ca2f6298aefa91ab5c5860853dacc08 220 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 52 219 2.4E-49 T 13-10-2018 IPR005273 Uracil-DNA glycosylase family 4 SJPD1_1223 0ca2f6298aefa91ab5c5860853dacc08 220 Gene3D G3DSA:3.40.470.10 40 220 5.6E-60 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_1223 0ca2f6298aefa91ab5c5860853dacc08 220 SMART SM00986 66 214 2.6E-28 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_1223 0ca2f6298aefa91ab5c5860853dacc08 220 SUPERFAMILY SSF52141 40 219 1.57E-52 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_1223 0ca2f6298aefa91ab5c5860853dacc08 220 Pfam PF03167 Uracil DNA glycosylase superfamily 66 213 3.1E-39 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_1223 0ca2f6298aefa91ab5c5860853dacc08 220 SMART SM00987 66 214 2.6E-28 T 13-10-2018 SJPD1_2578 9c9117ef5761caa9fbeda0991f1199d3 276 SUPERFAMILY SSF161098 16 266 5.1E-53 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2578 9c9117ef5761caa9fbeda0991f1199d3 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 267 3.6E-24 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2578 9c9117ef5761caa9fbeda0991f1199d3 276 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 269 7.7E-93 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 SJPD1_2578 9c9117ef5761caa9fbeda0991f1199d3 276 Gene3D G3DSA:1.10.3720.10 15 273 8.5E-62 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2578 9c9117ef5761caa9fbeda0991f1199d3 276 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 10 272 4.4E-117 T 13-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 SJPD1_0157 6d67a6843d1caae72dd0459e8d9db8da 383 SUPERFAMILY SSF141371 256 318 1.1E-5 T 13-10-2018 SJPD1_0157 6d67a6843d1caae72dd0459e8d9db8da 383 Pfam PF07238 PilZ domain 256 363 2.8E-6 T 13-10-2018 IPR009875 PilZ domain GO:0035438 SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 TIGRFAM TIGR00337 PyrG: CTP synthase 5 538 1.5E-235 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 Pfam PF00117 Glutamine amidotransferase class-I 304 536 5.3E-52 T 13-10-2018 IPR017926 Glutamine amidotransferase SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 Gene3D G3DSA:3.40.50.300 1 287 2.5E-124 T 13-10-2018 SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 Pfam PF06418 CTP synthase N-terminus 7 269 1.5E-120 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 Hamap MF_01227 CTP synthase [pyrG]. 6 543 49.656 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 Gene3D G3DSA:3.40.50.880 288 546 4.2E-97 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 SUPERFAMILY SSF52317 291 540 2.29E-73 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0078 8ebd92f3a9b52be924c41c0ae6bb15d3 546 SUPERFAMILY SSF52540 6 271 7.08E-116 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 Pfam PF13432 Tetratricopeptide repeat 27 76 1.8E-4 T 13-10-2018 SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 SUPERFAMILY SSF48452 27 132 1.97E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 Gene3D G3DSA:1.25.40.10 25 79 5.3E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 SMART SM00028 85 118 5.2E-5 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 SMART SM00028 52 83 38.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 Pfam PF00515 Tetratricopeptide repeat 86 117 5.8E-7 T 13-10-2018 IPR001440 Tetratricopeptide repeat 1 GO:0005515 SJPD1_2524 b47db6e090c53b52288d54a83ff17176 282 Gene3D G3DSA:1.25.40.10 80 159 9.9E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Gene3D G3DSA:1.10.10.160 107 181 3.2E-87 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 116 2.7E-25 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Pfam PF00580 UvrD/REP helicase N-terminal domain 131 264 1.9E-41 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 SUPERFAMILY SSF52540 6 618 1.99E-151 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Gene3D G3DSA:3.40.50.300 272 616 3.1E-104 T 13-10-2018 SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Gene3D G3DSA:3.40.50.300 7 264 3.2E-87 T 13-10-2018 SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Gene3D G3DSA:1.10.486.10 374 536 3.1E-104 T 13-10-2018 SJPD1_2020 636dd29e76d85bb4674aceedd17d8e10 681 Pfam PF13361 UvrD-like helicase C-terminal domain 269 598 4.3E-70 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 Gene3D G3DSA:3.40.50.1980 208 347 7.0E-205 T 13-10-2018 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 64 468 2.3E-107 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 SUPERFAMILY SSF53807 40 481 5.18E-156 T 13-10-2018 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 29 475 1.5E-180 T 13-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 83 90 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 Gene3D G3DSA:3.40.50.1980 65 207 7.0E-205 T 13-10-2018 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 154 168 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 TIGRFAM TIGR01282 nifD: nitrogenase molybdenum-iron protein alpha chain 14 481 2.0E-246 T 13-10-2018 IPR005972 Nitrogenase molybdenum-iron protein alpha chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1286 927a1a6d1de0adcee0869447b2da0119 484 Gene3D G3DSA:3.40.50.1980 29 475 7.0E-205 T 13-10-2018 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 SUPERFAMILY SSF50331 120 187 2.24E-17 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 SUPERFAMILY SSF46785 3 111 7.71E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 Gene3D G3DSA:1.10.10.10 1 106 4.3E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 Gene3D G3DSA:2.40.50.100 191 256 2.3E-16 T 13-10-2018 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 Gene3D G3DSA:2.40.50.100 120 186 5.2E-21 T 13-10-2018 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 120 187 4.3E-19 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 SUPERFAMILY SSF50331 171 255 3.89E-14 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 82 8.2E-14 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 105 3.4E-29 T 13-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 Pfam PF03459 TOBE domain 195 255 3.5E-10 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 Pfam PF03459 TOBE domain 123 184 4.1E-12 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_2570 f44782e93c5e0171ce8af3286413a26b 257 PIRSF PIRSF005763 1 257 8.4E-89 T 13-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 SMART SM00304 325 379 5.1E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 Gene3D G3DSA:1.10.287.950 325 656 1.3E-60 T 13-10-2018 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 SMART SM00283 401 655 8.8E-41 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 Gene3D G3DSA:3.30.450.20 171 307 7.8E-15 T 13-10-2018 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 SUPERFAMILY SSF58104 347 655 4.19E-57 T 13-10-2018 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 471 597 2.6E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 Pfam PF17201 Cache 3/Cache 2 fusion domain 32 302 2.0E-80 T 13-10-2018 IPR033462 Cache 3/Cache 2 fusion domain SJPD1_0260 17183b1460806ecefdd68c53f1b85da8 656 SUPERFAMILY SSF103190 112 204 1.81E-10 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 SUPERFAMILY SSF160467 5 95 2.88E-15 T 13-10-2018 SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 Gene3D G3DSA:3.30.1360.40 6 83 1.2E-16 T 13-10-2018 SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 Gene3D G3DSA:2.40.100.10 89 226 1.3E-51 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 6 201 1.9E-63 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 9 213 2.3E-51 T 13-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 SMART SM00796 3 204 1.6E-72 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D SJPD1_2269 4397d156b8ec5a733d8e6b15325d4c75 227 SUPERFAMILY SSF50891 90 220 1.71E-42 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_0418 e5357e905a05d7a855057352c5825910 290 Pfam PF00892 EamA-like transporter family 15 137 3.7E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0418 e5357e905a05d7a855057352c5825910 290 SUPERFAMILY SSF103481 187 275 6.28E-9 T 13-10-2018 SJPD1_0418 e5357e905a05d7a855057352c5825910 290 SUPERFAMILY SSF103481 61 139 1.07E-10 T 13-10-2018 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 SUPERFAMILY SSF53697 28 409 6.68E-98 T 13-10-2018 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 Gene3D G3DSA:3.40.50.10490 33 192 7.0E-105 T 13-10-2018 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 2 412 22.206 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 Pfam PF00342 Phosphoglucose isomerase 52 405 2.2E-38 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 Gene3D G3DSA:3.40.50.10490 26 409 7.0E-105 T 13-10-2018 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 PRINTS PR00662 Glucose-6-phosphate isomerase signature 353 371 6.6E-21 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 PRINTS PR00662 Glucose-6-phosphate isomerase signature 242 263 6.6E-21 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 PRINTS PR00662 Glucose-6-phosphate isomerase signature 58 77 6.6E-21 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 PRINTS PR00662 Glucose-6-phosphate isomerase signature 168 186 6.6E-21 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 PRINTS PR00662 Glucose-6-phosphate isomerase signature 371 385 6.6E-21 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 PRINTS PR00662 Glucose-6-phosphate isomerase signature 385 398 6.6E-21 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1398 7730517a33c9dfc17dfcbbeedfbf2138 421 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 385 402 - T 13-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 SJPD1_1596 74580e5b20446a8828694726f18ab8de 232 Gene3D G3DSA:3.40.50.150 1 226 3.3E-51 T 13-10-2018 SJPD1_1596 74580e5b20446a8828694726f18ab8de 232 SUPERFAMILY SSF53335 2 176 2.33E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1596 74580e5b20446a8828694726f18ab8de 232 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 99 105 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SJPD1_1596 74580e5b20446a8828694726f18ab8de 232 Pfam PF05175 Methyltransferase small domain 20 110 3.3E-20 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 SJPD1_2686 1e3faf3168c027d6cdacc8f46b29d350 217 Gene3D G3DSA:3.30.390.80 3 150 5.7E-41 T 13-10-2018 SJPD1_2686 1e3faf3168c027d6cdacc8f46b29d350 217 SUPERFAMILY SSF54768 10 168 3.45E-22 T 13-10-2018 SJPD1_2686 1e3faf3168c027d6cdacc8f46b29d350 217 Pfam PF04098 Rad52/22 family double-strand break repair protein 5 150 3.5E-31 T 13-10-2018 IPR007232 DNA repair protein Rad52/59/22 GO:0006281|GO:0006310 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938 SJPD1_2844 7c6bb5cb5fa56f69d3a0273df6481ba1 417 Gene3D G3DSA:1.20.5.1230 219 413 4.5E-5 T 13-10-2018 SJPD1_2844 7c6bb5cb5fa56f69d3a0273df6481ba1 417 SUPERFAMILY SSF47162 217 356 3.53E-6 T 13-10-2018 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 SUPERFAMILY SSF52172 9 172 4.98E-33 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 226 3.6E-13 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 Gene3D G3DSA:3.40.50.2300 5 135 2.0E-30 T 13-10-2018 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 SMART SM00862 156 226 2.1E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 Pfam PF00072 Response regulator receiver domain 14 122 1.8E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 SMART SM00448 11 122 3.9E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 SUPERFAMILY SSF46894 145 226 1.02E-12 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_0455 376202d8eb72a556b0b283a18801dfb6 228 Gene3D G3DSA:1.10.10.10 136 228 9.0E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2540 5a4417346bcdfa6580f1f30f4a8d1f3a 327 SUPERFAMILY SSF53067 27 147 1.94E-11 T 13-10-2018 SJPD1_2540 5a4417346bcdfa6580f1f30f4a8d1f3a 327 SUPERFAMILY SSF53067 155 303 6.12E-10 T 13-10-2018 SJPD1_2540 5a4417346bcdfa6580f1f30f4a8d1f3a 327 Gene3D G3DSA:3.30.420.150 134 304 1.2E-21 T 13-10-2018 SJPD1_2540 5a4417346bcdfa6580f1f30f4a8d1f3a 327 Pfam PF02541 Ppx/GppA phosphatase family 68 303 4.3E-16 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 SJPD1_2540 5a4417346bcdfa6580f1f30f4a8d1f3a 327 Gene3D G3DSA:3.30.420.40 29 133 1.2E-21 T 13-10-2018 SJPD1_2015 21dfd2d39b42ea39df2ce1810b17d369 199 ProSitePatterns PS00194 Thioredoxin family active site. 69 87 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 SJPD1_2015 21dfd2d39b42ea39df2ce1810b17d369 199 Gene3D G3DSA:3.40.30.10 30 178 5.4E-13 T 13-10-2018 SJPD1_2015 21dfd2d39b42ea39df2ce1810b17d369 199 SUPERFAMILY SSF52833 1 166 8.44E-14 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1585 ca59847a9ee65e49d87c30cd47793572 248 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1585 ca59847a9ee65e49d87c30cd47793572 248 Pfam PF00005 ABC transporter 23 171 4.5E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1585 ca59847a9ee65e49d87c30cd47793572 248 SUPERFAMILY SSF52540 7 240 1.57E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1585 ca59847a9ee65e49d87c30cd47793572 248 PIRSF PIRSF039085 4 247 2.7E-110 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 SJPD1_1585 ca59847a9ee65e49d87c30cd47793572 248 Gene3D G3DSA:3.40.50.300 4 248 1.4E-82 T 13-10-2018 SJPD1_1585 ca59847a9ee65e49d87c30cd47793572 248 SMART SM00382 32 227 1.0E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0394 98777361d7e842b692e2e6511adbfeff 219 SUPERFAMILY SSF161098 9 205 6.41E-43 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_0394 98777361d7e842b692e2e6511adbfeff 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 219 3.1E-19 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_0394 98777361d7e842b692e2e6511adbfeff 219 Gene3D G3DSA:1.10.3720.10 8 219 1.3E-45 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1091 b54f71a0dc23fbbb4e0e97e832eca10d 220 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 7 173 9.1E-22 T 13-10-2018 IPR007296 Domain of unknown function DUF403 SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 Pfam PF05048 Periplasmic copper-binding protein (NosD) 162 393 7.4E-43 T 13-10-2018 IPR007742 Periplasmic copper-binding protein NosD, beta helix domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 269 297 2.7E-6 T 13-10-2018 IPR022441 Parallel beta-helix repeat-2 Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 205 226 2500.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 249 274 4300.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 155 183 320.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 98 126 480.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 302 323 1900.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 275 296 0.65 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SMART SM00710 227 248 440.0 T 13-10-2018 IPR006626 Parallel beta-helix repeat SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 SUPERFAMILY SSF51126 41 419 1.12E-57 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 Gene3D G3DSA:2.160.20.10 37 394 1.6E-29 T 13-10-2018 IPR012334 Pectin lyase fold SJPD1_0998 d7447eb0e4b84bfa52fe65cc8f1a76a7 432 TIGRFAM TIGR04247 NosD_copper_fam: nitrous oxide reductase family maturation protein NosD 44 429 1.2E-121 T 13-10-2018 IPR026464 Nitrous oxide reductase family maturation protein NosD SJPD1_2496 8ccfbe67f608138b634880daf858fc5c 255 SUPERFAMILY SSF53335 19 126 1.01E-18 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2496 8ccfbe67f608138b634880daf858fc5c 255 Gene3D G3DSA:3.40.50.150 18 152 2.8E-15 T 13-10-2018 SJPD1_2496 8ccfbe67f608138b634880daf858fc5c 255 Pfam PF13649 Methyltransferase domain 39 110 7.4E-8 T 13-10-2018 SJPD1_1706 a97404be35da7c50643e89e5d774d9c6 299 Pfam PF08003 Protein of unknown function (DUF1698) 3 298 3.8E-89 T 13-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like SJPD1_1706 a97404be35da7c50643e89e5d774d9c6 299 SUPERFAMILY SSF53335 70 299 9.94E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1706 a97404be35da7c50643e89e5d774d9c6 299 Gene3D G3DSA:3.40.50.150 76 258 2.1E-20 T 13-10-2018 SJPD1_1706 a97404be35da7c50643e89e5d774d9c6 299 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 1 299 48.354 T 13-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 SJPD1_1706 a97404be35da7c50643e89e5d774d9c6 299 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 12 297 4.3E-96 T 13-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 SJPD1_2450 98a3426aa8e04eac66c1e091b094d99f 327 SUPERFAMILY SSF52402 1 232 7.5E-29 T 13-10-2018 SJPD1_2450 98a3426aa8e04eac66c1e091b094d99f 327 Gene3D G3DSA:3.40.50.620 1 156 1.1E-36 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2450 98a3426aa8e04eac66c1e091b094d99f 327 Pfam PF00764 Arginosuccinate synthase 6 72 2.3E-8 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 SJPD1_0823 2564d577edb9da8c447fc08c44474171 139 Pfam PF02130 Uncharacterized protein family UPF0054 15 126 1.9E-32 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 SJPD1_0823 2564d577edb9da8c447fc08c44474171 139 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 99 109 - T 13-10-2018 IPR020549 Endoribonuclease YbeY, conserved site SJPD1_0823 2564d577edb9da8c447fc08c44474171 139 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 1 131 19.69 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 SJPD1_0823 2564d577edb9da8c447fc08c44474171 139 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 28 127 1.9E-28 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 SJPD1_0823 2564d577edb9da8c447fc08c44474171 139 SUPERFAMILY SSF55486 19 134 2.56E-33 T 13-10-2018 SJPD1_0823 2564d577edb9da8c447fc08c44474171 139 Gene3D G3DSA:3.40.390.30 5 134 1.8E-35 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 SUPERFAMILY SSF51735 4 224 1.28E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 Pfam PF00106 short chain dehydrogenase 6 187 1.1E-41 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 4.9E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 4.9E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 4.9E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 Gene3D G3DSA:3.40.50.720 3 278 1.3E-65 T 13-10-2018 SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 5.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 5.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 5.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_2103 708f7b1193fe24d81ad5f534bb1dae35 280 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 5.0E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 103 113 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 173 32.975 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 13-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 Pfam PF01195 Peptidyl-tRNA hydrolase 3 174 2.8E-52 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 175 6.3E-51 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 Gene3D G3DSA:3.40.50.1470 1 184 1.1E-58 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 SJPD1_0249 4f73d7531e72ae6b29d9af7ad11ec0cf 191 SUPERFAMILY SSF53178 1 176 4.97E-57 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 194 258 8.2E-17 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 121 187 9.3E-19 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Gene3D G3DSA:2.40.50.100 117 178 3.4E-21 T 13-10-2018 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Gene3D G3DSA:1.10.10.10 8 116 3.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 PIRSF PIRSF005763 8 259 3.7E-79 T 13-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 82 3.9E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Pfam PF03459 TOBE domain 194 255 5.0E-11 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Pfam PF03459 TOBE domain 124 185 6.6E-11 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Gene3D G3DSA:2.40.50.100 179 188 3.4E-21 T 13-10-2018 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 SUPERFAMILY SSF50331 121 187 1.04E-17 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 Gene3D G3DSA:2.40.50.100 193 259 2.2E-20 T 13-10-2018 SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 SUPERFAMILY SSF46785 18 102 1.45E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 18 103 5.6E-30 T 13-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal SJPD1_2175 5b532b2f0873db6fa58bafb18947df79 259 SUPERFAMILY SSF50331 193 258 4.86E-17 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 SUPERFAMILY SSF50249 2 123 2.06E-50 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.472 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.5E-57 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.5E-57 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.5E-57 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.5E-57 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.5E-57 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.5E-57 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 124 1.5E-68 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 PIRSF PIRSF002133 1 124 1.7E-53 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 Pfam PF00164 Ribosomal protein S12/S23 12 123 2.0E-40 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0442 7ba1f8b902eda7ac1c478e82b7746219 125 Gene3D G3DSA:2.40.50.140 1 125 3.3E-61 T 13-10-2018 SJPD1_0371 b0321e50eda4e213e275d3f9a29e280e 691 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 31 662 1.6E-194 T 13-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ SJPD1_0371 b0321e50eda4e213e275d3f9a29e280e 691 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 129 583 6.8E-88 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit SJPD1_1457 70558805878550601602cd8b460019a0 239 Gene3D G3DSA:3.40.50.1820 9 238 4.9E-28 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1457 70558805878550601602cd8b460019a0 239 SUPERFAMILY SSF53474 13 237 6.14E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1457 70558805878550601602cd8b460019a0 239 Pfam PF12697 Alpha/beta hydrolase family 28 163 4.7E-11 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 415 520 2.4E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 Gene3D G3DSA:3.30.565.10 371 522 2.8E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 Pfam PF08269 Cache domain 84 207 3.0E-22 T 13-10-2018 IPR004010 Double Cache domain 2 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 Gene3D G3DSA:3.30.450.20 50 211 2.2E-32 T 13-10-2018 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 Gene3D G3DSA:1.10.287.130 286 368 1.9E-9 T 13-10-2018 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 SMART SM00387 411 523 1.4E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 SMART SM01049 48 154 8.3E-4 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 2.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 507 520 2.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 2.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 PRINTS PR00344 Bacterial sensor protein C-terminal signature 483 501 2.8E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 SUPERFAMILY SSF55874 370 519 1.22E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0571 eaee5bf2d266ec3f68cee520e8433961 532 SUPERFAMILY SSF47384 297 366 2.94E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2374 f4950f4327462a6536632bb248f3f2f4 381 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 356 1.6E-92 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 SJPD1_2374 f4950f4327462a6536632bb248f3f2f4 381 Gene3D G3DSA:1.20.1090.10 186 381 7.2E-41 T 13-10-2018 SJPD1_2374 f4950f4327462a6536632bb248f3f2f4 381 SUPERFAMILY SSF56796 3 380 2.49E-100 T 13-10-2018 SJPD1_2374 f4950f4327462a6536632bb248f3f2f4 381 Gene3D G3DSA:3.40.50.1970 1 185 2.5E-49 T 13-10-2018 SJPD1_1859 2139406c575a38e9bc46fb1036c6650d 534 SMART SM00283 272 533 3.0E-37 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1859 2139406c575a38e9bc46fb1036c6650d 534 SMART SM00304 204 257 0.001 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1859 2139406c575a38e9bc46fb1036c6650d 534 Gene3D G3DSA:1.10.287.950 203 534 2.9E-53 T 13-10-2018 SJPD1_1859 2139406c575a38e9bc46fb1036c6650d 534 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 495 8.8E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1859 2139406c575a38e9bc46fb1036c6650d 534 SUPERFAMILY SSF58104 225 533 9.02E-56 T 13-10-2018 SJPD1_1021 ec555818272526d1a29ac073a1534751 193 SUPERFAMILY SSF52172 3 127 3.56E-30 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1021 ec555818272526d1a29ac073a1534751 193 SMART SM00448 3 115 1.8E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1021 ec555818272526d1a29ac073a1534751 193 Pfam PF00072 Response regulator receiver domain 5 115 5.4E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1021 ec555818272526d1a29ac073a1534751 193 Gene3D G3DSA:3.40.50.2300 1 127 2.0E-30 T 13-10-2018 SJPD1_0050 493882289c8be858a916f8bc9d9f2476 293 Gene3D G3DSA:1.10.3290.10 98 293 7.4E-45 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_0050 493882289c8be858a916f8bc9d9f2476 293 Pfam PF02661 Fic/DOC family 142 243 9.1E-14 T 13-10-2018 IPR003812 Fido domain SJPD1_0050 493882289c8be858a916f8bc9d9f2476 293 SUPERFAMILY SSF140931 127 286 1.96E-26 T 13-10-2018 IPR036597 Fido-like domain superfamily SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 SUPERFAMILY SSF55021 341 412 1.59E-11 T 13-10-2018 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 Gene3D G3DSA:3.40.50.720 2 329 3.9E-153 T 13-10-2018 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 114 6.2E-14 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 Pfam PF00742 Homoserine dehydrogenase 130 308 5.5E-65 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 SUPERFAMILY SSF55347 130 295 9.81E-54 T 13-10-2018 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 PIRSF PIRSF000098 1 423 1.4E-159 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 Pfam PF01842 ACT domain 343 410 9.2E-12 T 13-10-2018 IPR002912 ACT domain SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 176 198 - T 13-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 SUPERFAMILY SSF51735 1 151 3.57E-30 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 Gene3D G3DSA:3.30.360.10 129 337 3.9E-153 T 13-10-2018 SJPD1_0202 bc0338ba42a6f6446d54a0d3056a7372 423 Gene3D G3DSA:3.30.70.260 338 412 3.9E-153 T 13-10-2018 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 184 204 3.3E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 371 398 3.3E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 3.3E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 451 1.6E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 Gene3D G3DSA:1.10.287.950 204 537 7.9E-54 T 13-10-2018 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 SUPERFAMILY SSF58104 226 536 5.89E-55 T 13-10-2018 SJPD1_1901 c53bb4226a5d17351276af5434662ecf 537 SMART SM00283 273 535 4.1E-46 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2699 b3c243e406b417b4e13b3cc029a1ff84 392 Pfam PF00589 Phage integrase family 237 375 4.8E-21 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_2699 b3c243e406b417b4e13b3cc029a1ff84 392 SUPERFAMILY SSF56349 104 379 1.68E-48 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_2699 b3c243e406b417b4e13b3cc029a1ff84 392 Gene3D G3DSA:1.10.443.10 210 388 1.6E-25 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_2699 b3c243e406b417b4e13b3cc029a1ff84 392 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 105 162 2.2E-5 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 SJPD1_2699 b3c243e406b417b4e13b3cc029a1ff84 392 Gene3D G3DSA:1.10.150.130 102 209 5.0E-18 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_2860 e79b3ba274def71dddcfff56d2b6d404 235 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 31 227 4.1E-47 T 13-10-2018 IPR006214 Bax inhibitor 1-related SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 SUPERFAMILY SSF103473 2 405 3.27E-38 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 Gene3D G3DSA:1.20.1250.20 3 197 4.8E-20 T 13-10-2018 SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 Pfam PF07690 Major Facilitator Superfamily 18 270 1.4E-18 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 Gene3D G3DSA:1.20.1250.20 208 405 2.1E-12 T 13-10-2018 SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 PRINTS PR01035 Tetracycline resistance protein signature 50 69 5.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 PRINTS PR01035 Tetracycline resistance protein signature 314 334 5.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_1576 9a4481392f49bcd1119c9dadfc0bd298 408 PRINTS PR01035 Tetracycline resistance protein signature 139 161 5.0E-6 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_1620 d893934274124f35a1607eb8417e06a8 181 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 13 163 4.8E-29 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related SJPD1_1620 d893934274124f35a1607eb8417e06a8 181 Gene3D G3DSA:2.30.110.10 1 166 2.5E-44 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_1620 d893934274124f35a1607eb8417e06a8 181 SUPERFAMILY SSF50475 2 170 7.27E-44 T 13-10-2018 SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 7 363 7.2E-103 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 224 233 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 2 365 55.381 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 Gene3D G3DSA:3.40.640.10 45 272 1.9E-94 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 SUPERFAMILY SSF53383 4 364 2.02E-67 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 Gene3D G3DSA:3.90.1150.10 28 357 1.9E-94 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_0253 03fb7cbf8de0ed485b8fcddfe402acca 366 Pfam PF00155 Aminotransferase class I and II 32 355 1.5E-46 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 Gene3D G3DSA:2.40.50.100 72 141 1.5E-23 T 13-10-2018 SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 Gene3D G3DSA:2.40.50.100 1 67 5.8E-26 T 13-10-2018 SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 SUPERFAMILY SSF50331 74 140 2.67E-18 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 Pfam PF03459 TOBE domain 4 65 1.4E-12 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 Pfam PF03459 TOBE domain 76 137 3.4E-15 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 SUPERFAMILY SSF50331 1 68 2.43E-19 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 68 1.3E-21 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 SJPD1_1972 a2f75f91e450d54f8ea208102f03a608 141 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 75 140 1.4E-19 T 13-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 1 136 34.401 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 Gene3D G3DSA:3.30.70.141 1 137 8.3E-59 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 SMART SM00562 1 137 9.0E-80 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 Pfam PF00334 Nucleoside diphosphate kinase 2 136 1.9E-55 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 4 26 9.5E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 89 105 9.5E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 68 85 9.5E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 112 131 9.5E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 PRINTS PR01243 Nucleoside diphosphate kinase signature 48 67 9.5E-41 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 112 120 - T 13-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0262 0b23fd0b82b60ab826dda613b6745bd8 137 SUPERFAMILY SSF54919 1 136 4.45E-57 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 SJPD1_1248 2abc1192bdde4e7307fa223e07dc60c9 171 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 SJPD1_1248 2abc1192bdde4e7307fa223e07dc60c9 171 SUPERFAMILY SSF52218 1 171 4.6E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1248 2abc1192bdde4e7307fa223e07dc60c9 171 Gene3D G3DSA:3.40.50.360 2 171 1.4E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1248 2abc1192bdde4e7307fa223e07dc60c9 171 TIGRFAM TIGR01752 flav_long: flavodoxin 3 171 3.0E-44 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 SJPD1_1248 2abc1192bdde4e7307fa223e07dc60c9 171 Pfam PF00258 Flavodoxin 6 163 1.7E-21 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 SJPD1_1248 2abc1192bdde4e7307fa223e07dc60c9 171 PIRSF PIRSF038996 1 171 2.0E-47 T 13-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 Gene3D G3DSA:2.30.30.280 203 263 5.1E-18 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 Gene3D G3DSA:3.40.50.620 1 198 4.9E-61 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 337 1.2E-105 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 1 338 34.966 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 SUPERFAMILY SSF52402 1 232 2.87E-42 T 13-10-2018 SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 Pfam PF03054 tRNA methyl transferase 1 337 2.6E-104 T 13-10-2018 SJPD1_2767 5b6627fbf6c1706058fa1fb9596f7ffb 339 Gene3D G3DSA:2.40.30.10 265 339 1.2E-12 T 13-10-2018 SJPD1_0232 1d2ad22b8fb8df6604d5261f9ce869cd 343 SUPERFAMILY SSF53756 16 304 5.23E-10 T 13-10-2018 SJPD1_0232 1d2ad22b8fb8df6604d5261f9ce869cd 343 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 4 334 4.4E-69 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 SJPD1_0232 1d2ad22b8fb8df6604d5261f9ce869cd 343 Pfam PF02684 Lipid-A-disaccharide synthetase 4 327 4.8E-74 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 SJPD1_2457 8a355fb079573378f5bd28868395d2b2 157 SUPERFAMILY SSF64438 5 153 6.41E-44 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic SJPD1_2457 8a355fb079573378f5bd28868395d2b2 157 Gene3D G3DSA:3.30.1330.200 2 156 1.4E-46 T 13-10-2018 IPR038592 CheD-like superfamily SJPD1_2457 8a355fb079573378f5bd28868395d2b2 157 Pfam PF03975 CheD chemotactic sensory transduction 55 147 5.4E-25 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 SJPD1_2457 8a355fb079573378f5bd28868395d2b2 157 Hamap MF_01440 Chemoreceptor glutamine deamidase CheD [cheD]. 1 152 24.846 T 13-10-2018 IPR005659 Chemoreceptor glutamine deamidase CheD GO:0006935|GO:0050568 SJPD1_1547 713c15ecdeea0ad58d6c795760b790e5 139 SUPERFAMILY SSF50022 41 137 1.57E-13 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_1547 713c15ecdeea0ad58d6c795760b790e5 139 Pfam PF00355 Rieske [2Fe-2S] domain 45 126 2.9E-7 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 SJPD1_1547 713c15ecdeea0ad58d6c795760b790e5 139 Gene3D G3DSA:2.102.10.10 36 138 1.1E-12 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 SJPD1_2627 5dadefcce3c032b1eaf41b0a28c24985 362 SMART SM00460 199 277 9.0E-12 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_2627 5dadefcce3c032b1eaf41b0a28c24985 362 Gene3D G3DSA:3.10.620.30 105 290 1.5E-22 T 13-10-2018 SJPD1_2627 5dadefcce3c032b1eaf41b0a28c24985 362 Pfam PF01841 Transglutaminase-like superfamily 153 275 4.8E-23 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_2627 5dadefcce3c032b1eaf41b0a28c24985 362 SUPERFAMILY SSF54001 128 276 9.39E-26 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_2667 055ed82016248b92b17d483d77289c0f 434 Gene3D G3DSA:3.40.50.12240 14 434 7.3E-138 T 13-10-2018 SJPD1_2667 055ed82016248b92b17d483d77289c0f 434 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 144 353 1.1E-69 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_2667 055ed82016248b92b17d483d77289c0f 434 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 13 433 3.0E-176 T 13-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 SJPD1_2667 055ed82016248b92b17d483d77289c0f 434 SMART SM00382 156 337 1.7E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2667 055ed82016248b92b17d483d77289c0f 434 SUPERFAMILY SSF52540 92 359 7.98E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 SUPERFAMILY SSF56762 201 546 7.06E-104 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 93 157 6.0E-17 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 Gene3D G3DSA:3.30.460.80 5 140 8.8E-13 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 Gene3D G3DSA:1.10.645.20 189 546 1.2E-105 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 SUPERFAMILY SSF143243 19 202 2.48E-39 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 Pfam PF00374 Nickel-dependent hydrogenase 226 294 7.8E-13 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 30 158 3.3E-23 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 304 474 1.7E-39 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1038 09b4c26061fe86e0a2572c1ae38622ee 580 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 479 546 1.1E-9 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 Gene3D G3DSA:3.30.450.20 30 209 6.7E-43 T 13-10-2018 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 Pfam PF00672 HAMP domain 233 281 7.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 SUPERFAMILY SSF58104 254 562 1.23E-59 T 13-10-2018 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 SMART SM00283 308 562 1.3E-45 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 Pfam PF08269 Cache domain 34 210 5.8E-40 T 13-10-2018 IPR004010 Double Cache domain 2 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 Gene3D G3DSA:1.10.287.950 231 563 4.9E-62 T 13-10-2018 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 SMART SM01049 42 138 1.3E-21 T 13-10-2018 IPR033480 Single Cache domain 2 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 380 499 8.8E-35 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0142 cbe146c01bb7d144594ae5d9630a0741 563 SMART SM00304 232 286 1.5E-10 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 SMART SM01329 6 350 1.2E-198 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 SUPERFAMILY SSF53659 5 354 6.48E-125 T 13-10-2018 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 241 260 - T 13-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 348 2.0E-135 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 342 4.3E-157 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 Gene3D G3DSA:3.40.718.10 3 356 8.3E-144 T 13-10-2018 SJPD1_1891 767a1675e3bc78ec88a3b434fb15b7f4 357 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 354 51.034 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 SJPD1_0184 2810d75387a9dd93179c88c3f796a945 798 SUPERFAMILY SSF48452 299 409 2.83E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0184 2810d75387a9dd93179c88c3f796a945 798 Gene3D G3DSA:1.25.40.10 602 796 5.7E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0184 2810d75387a9dd93179c88c3f796a945 798 Pfam PF13181 Tetratricopeptide repeat 752 783 8.5E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 SUPERFAMILY SSF53807 4 515 7.85E-151 T 13-10-2018 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 Gene3D G3DSA:3.40.50.1980 213 484 2.3E-163 T 13-10-2018 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 71 494 1.2E-120 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 Gene3D G3DSA:1.20.89.10 320 500 2.3E-163 T 13-10-2018 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 Pfam PF11844 Domain of unknown function (DUF3364) 2 57 2.0E-20 T 13-10-2018 IPR024564 Nitrogenase molybdenum-iron protein beta chain, N-terminal KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 Gene3D G3DSA:3.40.50.1980 71 212 2.3E-163 T 13-10-2018 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 152 166 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 Gene3D G3DSA:3.40.50.1980 60 477 2.3E-163 T 13-10-2018 SJPD1_1287 83be0f29fa0d069e189b8172b002da4a 516 TIGRFAM TIGR01286 nifK: nitrogenase molybdenum-iron protein beta chain 2 516 1.1E-226 T 13-10-2018 IPR005976 Nitrogenase molybdenum-iron protein beta chain GO:0009399|GO:0016163|GO:0016612|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1710 952c0b69a06818f12c13cf7e5bb0ddda 377 PIRSF PIRSF000390 1 376 6.0E-79 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_1710 952c0b69a06818f12c13cf7e5bb0ddda 377 SUPERFAMILY SSF53383 4 373 1.35E-86 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1710 952c0b69a06818f12c13cf7e5bb0ddda 377 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 16 369 9.0E-87 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_1710 952c0b69a06818f12c13cf7e5bb0ddda 377 Gene3D G3DSA:3.90.1150.10 255 376 8.9E-33 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1710 952c0b69a06818f12c13cf7e5bb0ddda 377 Gene3D G3DSA:3.40.640.10 1 252 8.2E-65 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 Hamap MF_00384 Homoserine kinase [thrB]. 3 292 27.36 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 SUPERFAMILY SSF54211 2 142 1.37E-25 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 Pfam PF00288 GHMP kinases N terminal domain 77 137 3.7E-11 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 TIGRFAM TIGR00191 thrB: homoserine kinase 1 293 2.0E-81 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 83 94 - T 13-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 Gene3D G3DSA:3.30.230.10 3 155 1.8E-74 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 SUPERFAMILY SSF55060 158 275 7.56E-30 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 PIRSF PIRSF000676 1 294 6.1E-83 T 13-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 PRINTS PR00958 Homoserine kinase signature 163 180 1.7E-31 T 13-10-2018 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 PRINTS PR00958 Homoserine kinase signature 124 137 1.7E-31 T 13-10-2018 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 PRINTS PR00958 Homoserine kinase signature 8 23 1.7E-31 T 13-10-2018 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 PRINTS PR00958 Homoserine kinase signature 90 105 1.7E-31 T 13-10-2018 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 PRINTS PR00958 Homoserine kinase signature 242 257 1.7E-31 T 13-10-2018 SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 Pfam PF08544 GHMP kinases C terminal 222 274 5.1E-6 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain SJPD1_0290 8c9166edebeecc5d5eb93e223c90af6e 294 Gene3D G3DSA:3.30.70.890 156 263 1.8E-74 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily SJPD1_1373 bf2c1b05e063d88d32a180a94291a189 615 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 551 612 6.6E-15 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_1373 bf2c1b05e063d88d32a180a94291a189 615 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 7 424 9.6E-75 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 SJPD1_1373 bf2c1b05e063d88d32a180a94291a189 615 SUPERFAMILY SSF64518 320 612 4.18E-12 T 13-10-2018 SJPD1_1373 bf2c1b05e063d88d32a180a94291a189 615 PRINTS PR01005 Flagellar hook-associated protein signature 14 37 4.4E-10 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 SJPD1_1373 bf2c1b05e063d88d32a180a94291a189 615 PRINTS PR01005 Flagellar hook-associated protein signature 52 74 4.4E-10 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 SJPD1_1373 bf2c1b05e063d88d32a180a94291a189 615 PRINTS PR01005 Flagellar hook-associated protein signature 160 184 4.4E-10 T 13-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 SJPD1_1430 4324a0ae07440058b8e18256d8bc3523 290 SUPERFAMILY SSF47240 12 128 2.55E-9 T 13-10-2018 IPR009078 Ferritin-like superfamily SJPD1_0513 fa54fa316f083b197813bcb3fc0ddbed 262 PIRSF PIRSF000388 1 262 2.2E-98 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 SJPD1_0513 fa54fa316f083b197813bcb3fc0ddbed 262 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 255 9.3E-99 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 SJPD1_0513 fa54fa316f083b197813bcb3fc0ddbed 262 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 3 256 1.3E-100 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 SJPD1_0513 fa54fa316f083b197813bcb3fc0ddbed 262 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 260 36.805 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 SJPD1_0513 fa54fa316f083b197813bcb3fc0ddbed 262 SUPERFAMILY SSF51621 2 260 1.77E-91 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 SJPD1_0513 fa54fa316f083b197813bcb3fc0ddbed 262 Gene3D G3DSA:3.20.20.60 2 262 2.6E-96 T 13-10-2018 SJPD1_1364 968e62ad163a3da08e073a9ddcfac6d9 575 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 479 556 3.9E-6 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 SJPD1_1364 968e62ad163a3da08e073a9ddcfac6d9 575 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 229 427 7.3E-35 T 13-10-2018 IPR010809 Flagellar hook-associated protein 2, C-terminal GO:0007155|GO:0009288 SJPD1_1364 968e62ad163a3da08e073a9ddcfac6d9 575 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 24 119 7.1E-12 T 13-10-2018 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 SJPD1_1906 13fe89a01e600db1277761c82e45ee56 445 SUPERFAMILY SSF52540 2 408 1.93E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1906 13fe89a01e600db1277761c82e45ee56 445 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 45 384 1.6E-29 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 SJPD1_0093 0470c7224dc218c1a8d8b809d06d8085 182 SUPERFAMILY SSF53167 17 178 1.44E-19 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 SJPD1_0093 0470c7224dc218c1a8d8b809d06d8085 182 Gene3D G3DSA:3.40.50.1580 9 181 2.3E-18 T 13-10-2018 SJPD1_1917 ab08e2ff156475ba8c87d43a5e176281 167 Gene3D G3DSA:3.10.129.10 3 143 4.0E-34 T 13-10-2018 SJPD1_1917 ab08e2ff156475ba8c87d43a5e176281 167 SUPERFAMILY SSF54637 10 137 7.1E-33 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_1917 ab08e2ff156475ba8c87d43a5e176281 167 Pfam PF03061 Thioesterase superfamily 53 127 4.4E-10 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 Gene3D G3DSA:1.10.287.130 283 365 5.0E-9 T 13-10-2018 SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 SMART SM00387 407 529 2.5E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 SUPERFAMILY SSF55874 367 527 1.7E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 SUPERFAMILY SSF47384 292 356 1.43E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 Gene3D G3DSA:3.30.565.10 367 529 1.6E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 410 516 6.1E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 498 6.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 477 6.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2590 79ac142e99ff03b85085301784a9f89a 543 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 463 6.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2623 d2bba2d8b7e116a0fb8ad91e3a2fea85 208 Pfam PF01810 LysE type translocator 17 206 1.7E-31 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 SUPERFAMILY SSF160240 205 287 1.02E-19 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 5 285 1.7E-70 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 Gene3D G3DSA:3.30.70.1350 202 292 4.2E-21 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 Gene3D G3DSA:1.20.1510.10 3 201 8.1E-54 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 SUPERFAMILY SSF161111 4 203 2.22E-51 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 206 285 2.1E-21 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain SJPD1_1956 da5b16baf9eaba5216008f6d3d66beae 300 Pfam PF01545 Cation efflux family 9 202 7.3E-41 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 ProSitePatterns PS01071 grpE protein signature. 143 186 - T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 SUPERFAMILY SSF51064 139 188 2.88E-16 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 Pfam PF01025 GrpE 27 188 9.4E-51 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 PRINTS PR00773 GrpE protein signature 167 186 3.9E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 PRINTS PR00773 GrpE protein signature 140 155 3.9E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 PRINTS PR00773 GrpE protein signature 82 97 3.9E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 PRINTS PR00773 GrpE protein signature 54 70 3.9E-29 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 Gene3D G3DSA:2.30.22.10 133 188 3.5E-21 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 SUPERFAMILY SSF58014 35 133 8.76E-25 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 Gene3D G3DSA:3.90.20.20 15 131 1.3E-24 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 SJPD1_1720 cd2b0be34a4179d00534b6a3a5420d83 188 Hamap MF_01151 Protein GrpE [grpE]. 2 188 20.591 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 SJPD1_0012 2d66673874262b9774d93be10f1061b9 204 Gene3D G3DSA:3.20.130.10 1 177 3.4E-64 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 SJPD1_0012 2d66673874262b9774d93be10f1061b9 204 Pfam PF05683 Fumarase C-terminus 9 176 5.1E-39 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SJPD1_0012 2d66673874262b9774d93be10f1061b9 204 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 13 176 1.1E-60 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 SJPD1_0012 2d66673874262b9774d93be10f1061b9 204 SUPERFAMILY SSF117457 3 176 1.83E-53 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 SJPD1_2416 df4c8ab1af410563317865d2e7ab991a 130 PIRSF PIRSF002131 1 130 3.9E-47 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SJPD1_2416 df4c8ab1af410563317865d2e7ab991a 130 Gene3D G3DSA:3.30.420.80 1 130 6.4E-49 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2416 df4c8ab1af410563317865d2e7ab991a 130 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 130 32.293 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SJPD1_2416 df4c8ab1af410563317865d2e7ab991a 130 SUPERFAMILY SSF53137 13 130 7.85E-43 T 13-10-2018 SJPD1_2416 df4c8ab1af410563317865d2e7ab991a 130 Pfam PF00411 Ribosomal protein S11 19 129 2.1E-42 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 SJPD1_2416 df4c8ab1af410563317865d2e7ab991a 130 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 12 127 2.0E-52 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0238 143ec48a1c9ed08996b9675be420852a 155 SUPERFAMILY SSF52172 33 154 3.56E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0238 143ec48a1c9ed08996b9675be420852a 155 Gene3D G3DSA:3.40.50.12740 35 155 4.2E-36 T 13-10-2018 SJPD1_0238 143ec48a1c9ed08996b9675be420852a 155 SMART SM00448 34 149 1.1E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0238 143ec48a1c9ed08996b9675be420852a 155 Pfam PF00072 Response regulator receiver domain 36 149 3.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0525 6590753bac27632720652594217e78ac 528 PRINTS PR01038 Arginyl-tRNA synthetase signature 104 119 3.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 PRINTS PR01038 Arginyl-tRNA synthetase signature 283 304 3.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 PRINTS PR01038 Arginyl-tRNA synthetase signature 143 156 3.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 PRINTS PR01038 Arginyl-tRNA synthetase signature 119 135 3.4E-23 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 Pfam PF05746 DALR anticodon binding domain 414 528 7.8E-24 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 SJPD1_0525 6590753bac27632720652594217e78ac 528 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 114 123 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0525 6590753bac27632720652594217e78ac 528 Gene3D G3DSA:3.30.1360.70 1 101 4.0E-21 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 Gene3D G3DSA:1.10.730.10 409 528 5.8E-165 T 13-10-2018 SJPD1_0525 6590753bac27632720652594217e78ac 528 SUPERFAMILY SSF47323 408 528 4.45E-22 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0525 6590753bac27632720652594217e78ac 528 SMART SM01016 3 77 9.6E-23 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0525 6590753bac27632720652594217e78ac 528 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 11 528 2.5E-133 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 SMART SM00836 414 528 3.9E-33 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 SJPD1_0525 6590753bac27632720652594217e78ac 528 SUPERFAMILY SSF52374 100 424 1.13E-81 T 13-10-2018 SJPD1_0525 6590753bac27632720652594217e78ac 528 Pfam PF00750 tRNA synthetases class I (R) 99 386 3.2E-20 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 528 23.512 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0525 6590753bac27632720652594217e78ac 528 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 2 77 7.8E-18 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0525 6590753bac27632720652594217e78ac 528 Gene3D G3DSA:3.40.50.620 104 408 5.8E-165 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0525 6590753bac27632720652594217e78ac 528 SUPERFAMILY SSF55190 3 85 4.19E-19 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 SJPD1_0171 db3a1a2b50766468caa469e3a7629de9 169 Gene3D G3DSA:3.40.50.12280 2 168 1.6E-74 T 13-10-2018 SJPD1_0171 db3a1a2b50766468caa469e3a7629de9 169 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 12 155 42.551 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0171 db3a1a2b50766468caa469e3a7629de9 169 SUPERFAMILY SSF56770 16 159 1.44E-65 T 13-10-2018 SJPD1_0171 db3a1a2b50766468caa469e3a7629de9 169 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 16 156 7.7E-75 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0171 db3a1a2b50766468caa469e3a7629de9 169 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 42 148 7.7E-24 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Pfam PF13185 GAF domain 35 170 9.7E-7 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Pfam PF02954 Bacterial regulatory protein, Fis family 463 503 2.0E-11 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 414 423 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 226 239 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 288 303 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Gene3D G3DSA:3.40.50.300 187 372 6.1E-68 T 13-10-2018 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Pfam PF00158 Sigma-54 interaction domain 202 369 1.1E-72 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Gene3D G3DSA:1.10.8.60 373 438 5.1E-21 T 13-10-2018 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 SUPERFAMILY SSF55781 14 169 2.05E-15 T 13-10-2018 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Gene3D G3DSA:3.30.450.40 12 184 2.2E-26 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 SUPERFAMILY SSF46689 413 505 8.51E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 SUPERFAMILY SSF52540 201 440 3.74E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 Gene3D G3DSA:1.10.10.60 446 510 8.9E-14 T 13-10-2018 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 469 486 2.4E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 486 506 2.4E-7 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 SJPD1_1619 fbc3b0287b79a508b6dc5517a369aaab 512 SMART SM00382 222 365 1.3E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 13-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 SMART SM00938 4 105 1.1E-62 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 Gene3D G3DSA:3.30.70.120 1 112 1.0E-46 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 13-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 SUPERFAMILY SSF54913 1 112 4.77E-44 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 PIRSF PIRSF039144 1 112 2.0E-54 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 104 7.9E-43 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 PRINTS PR00340 P-II protein signature 83 103 7.0E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 PRINTS PR00340 P-II protein signature 2 17 7.0E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 PRINTS PR00340 P-II protein signature 23 41 7.0E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_0151 388002f5263b086c1b4dcfdc6534e6ac 112 PRINTS PR00340 P-II protein signature 52 75 7.0E-42 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 Pfam PF08666 SAF domain 288 341 1.5E-8 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 SMART SM00858 287 345 2.1E-7 T 13-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 Gene3D G3DSA:3.20.20.70 2 272 9.8E-93 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 Pfam PF03102 NeuB family 34 271 1.2E-92 T 13-10-2018 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 Reactome: R-HSA-4085001 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 SUPERFAMILY SSF51569 6 297 1.34E-86 T 13-10-2018 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 Gene3D G3DSA:3.90.1210.10 288 347 5.8E-20 T 13-10-2018 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 SUPERFAMILY SSF51269 285 345 3.3E-17 T 13-10-2018 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily Reactome: R-HSA-4085001 SJPD1_2797 555b82961841b010214499aaf7aacc0e 353 TIGRFAM TIGR03586 PseI: pseudaminic acid synthase 13 339 5.4E-153 T 13-10-2018 IPR020030 Pseudaminic acid biosynthesis, PseI KEGG: 00520+2.5.1.97|MetaCyc: PWY-6143 SJPD1_2887 4c7abca24d72033ebf09241c7f169afe 202 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 202 24.864 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 SJPD1_2887 4c7abca24d72033ebf09241c7f169afe 202 SUPERFAMILY SSF53271 6 192 3.32E-39 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_2887 4c7abca24d72033ebf09241c7f169afe 202 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 3 200 8.4E-77 T 13-10-2018 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 SJPD1_2887 4c7abca24d72033ebf09241c7f169afe 202 Pfam PF00156 Phosphoribosyl transferase domain 34 146 4.4E-10 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 SJPD1_2887 4c7abca24d72033ebf09241c7f169afe 202 Gene3D G3DSA:3.40.50.2020 1 202 3.5E-61 T 13-10-2018 SJPD1_1115 5c19d8172a4eef6bd63626c6fa75ecd2 92 SUPERFAMILY SSF81301 10 91 1.4E-15 T 13-10-2018 SJPD1_1115 5c19d8172a4eef6bd63626c6fa75ecd2 92 Pfam PF01909 Nucleotidyltransferase domain 12 90 1.4E-9 T 13-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 SJPD1_1115 5c19d8172a4eef6bd63626c6fa75ecd2 92 Gene3D G3DSA:3.30.460.10 4 92 1.1E-19 T 13-10-2018 SJPD1_2373 b4af98f8b06820819f4e89fa9b60ceba 199 Gene3D G3DSA:3.10.620.30 1 144 4.6E-14 T 13-10-2018 SJPD1_2373 b4af98f8b06820819f4e89fa9b60ceba 199 SUPERFAMILY SSF54001 15 136 3.36E-21 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_2373 b4af98f8b06820819f4e89fa9b60ceba 199 Pfam PF01841 Transglutaminase-like superfamily 25 132 4.7E-13 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1244 8330ff7d44c0b5f5d2dcb1711b6e1b80 841 Gene3D G3DSA:2.30.30.40 689 806 7.4E-11 T 13-10-2018 SJPD1_1244 8330ff7d44c0b5f5d2dcb1711b6e1b80 841 Pfam PF01584 CheW-like domain 689 823 5.3E-13 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_1244 8330ff7d44c0b5f5d2dcb1711b6e1b80 841 SUPERFAMILY SSF50341 682 823 1.44E-13 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 SJPD1_1244 8330ff7d44c0b5f5d2dcb1711b6e1b80 841 Gene3D G3DSA:2.40.50.180 705 772 7.4E-11 T 13-10-2018 SJPD1_1244 8330ff7d44c0b5f5d2dcb1711b6e1b80 841 SMART SM00260 682 824 0.0013 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 SUPERFAMILY SSF143243 13 200 4.71E-42 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 Gene3D G3DSA:3.30.460.80 2 139 4.8E-12 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 Gene3D G3DSA:1.10.645.20 186 544 8.4E-110 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 31 157 5.4E-24 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 472 544 1.4E-9 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 302 469 7.1E-42 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 93 144 3.0E-19 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 SUPERFAMILY SSF56762 198 544 1.44E-104 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2148 6ec82bdb7a9872bfa279076a82a31921 579 Pfam PF00374 Nickel-dependent hydrogenase 224 292 9.0E-14 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 SJPD1_2268 70a5cf94ec963462b26f2b855e13a61b 309 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 286 2.3E-80 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B SJPD1_2268 70a5cf94ec963462b26f2b855e13a61b 309 SMART SM00797 25 304 1.2E-107 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B SJPD1_2268 70a5cf94ec963462b26f2b855e13a61b 309 SUPERFAMILY SSF50891 200 293 2.2E-5 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2268 70a5cf94ec963462b26f2b855e13a61b 309 Gene3D G3DSA:2.40.100.10 177 306 3.0E-37 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily SJPD1_2268 70a5cf94ec963462b26f2b855e13a61b 309 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 10 295 9.9E-81 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B SJPD1_1974 6d1cad8a7846873f667c46cfe89e9dee 320 SUPERFAMILY SSF143865 1 258 2.48E-38 T 13-10-2018 SJPD1_1974 6d1cad8a7846873f667c46cfe89e9dee 320 SUPERFAMILY SSF144083 255 318 2.88E-21 T 13-10-2018 SJPD1_1974 6d1cad8a7846873f667c46cfe89e9dee 320 Gene3D G3DSA:1.20.58.340 244 320 1.2E-25 T 13-10-2018 SJPD1_1974 6d1cad8a7846873f667c46cfe89e9dee 320 Gene3D G3DSA:3.30.460.20 1 130 7.5E-7 T 13-10-2018 SJPD1_1974 6d1cad8a7846873f667c46cfe89e9dee 320 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 4 320 1.2E-73 T 13-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 SJPD1_1974 6d1cad8a7846873f667c46cfe89e9dee 320 Pfam PF01544 CorA-like Mg2+ transporter protein 30 316 8.0E-57 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 Gene3D G3DSA:1.10.3210.10 425 603 1.2E-7 T 13-10-2018 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 SUPERFAMILY SSF81593 201 297 8.63E-6 T 13-10-2018 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 SUPERFAMILY SSF81301 59 185 2.13E-15 T 13-10-2018 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 Pfam PF01966 HD domain 457 580 1.0E-9 T 13-10-2018 IPR006674 HD domain SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 841 77.047 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 SUPERFAMILY SSF109604 425 595 1.73E-11 T 13-10-2018 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 PIRSF PIRSF006288 12 695 1.2E-125 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 PIRSF PIRSF006288 734 837 1.5E-7 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 SJPD1_2130 c49b0df409a7be48dccae4ac137f853e 841 Pfam PF08335 GlnD PII-uridylyltransferase 192 321 2.9E-20 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 SJPD1_2703 8be5ed1c4e70b4d3a4f6e6ae552205ad 473 SUPERFAMILY SSF56954 6 471 2.35E-95 T 13-10-2018 SJPD1_2703 8be5ed1c4e70b4d3a4f6e6ae552205ad 473 Pfam PF02321 Outer membrane efflux protein 72 261 1.9E-19 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2703 8be5ed1c4e70b4d3a4f6e6ae552205ad 473 Pfam PF02321 Outer membrane efflux protein 287 469 1.3E-22 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2703 8be5ed1c4e70b4d3a4f6e6ae552205ad 473 Gene3D G3DSA:1.20.1600.10 62 471 1.4E-117 T 13-10-2018 SJPD1_2703 8be5ed1c4e70b4d3a4f6e6ae552205ad 473 Gene3D G3DSA:2.20.200.10 109 360 1.4E-117 T 13-10-2018 SJPD1_2703 8be5ed1c4e70b4d3a4f6e6ae552205ad 473 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 21 470 3.4E-117 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 SJPD1_2491 37f632171b0f27c4925e61b0757c884b 255 Pfam PF02673 Bacitracin resistance protein BacA 7 248 3.5E-72 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 SJPD1_2491 37f632171b0f27c4925e61b0757c884b 255 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 254 17.291 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 PIRSF PIRSF009451 4 499 1.2E-240 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 32 497 1.6E-226 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 Gene3D G3DSA:3.40.1080.10 3 229 2.8E-94 T 13-10-2018 SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 Gene3D G3DSA:3.40.1080.10 231 499 2.0E-118 T 13-10-2018 SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 34 497 3.4E-232 T 13-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 SUPERFAMILY SSF100950 31 228 4.19E-71 T 13-10-2018 IPR037171 NagB/RpiA transferase-like SJPD1_2119 84ad9592bc2a93b3314f9e36f3c9a9e0 499 SUPERFAMILY SSF100950 233 497 1.63E-56 T 13-10-2018 IPR037171 NagB/RpiA transferase-like SJPD1_2027 48e2edcf2b3d4d03e928cbf0e8cb2b14 174 Pfam PF05433 Glycine zipper 2TM domain 69 110 2.6E-9 T 13-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 SJPD1_2888 bde9ccbddb20f4f48da676538fdcccb9 153 Pfam PF06271 RDD family 24 146 7.2E-15 T 13-10-2018 IPR010432 RDD SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 SMART SM00418 34 112 2.5E-30 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 51 1.3E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 83 98 1.3E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 1.3E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 66 1.3E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 57 75 - T 13-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 Pfam PF01022 Bacterial regulatory protein, arsR family 41 86 1.1E-19 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 SUPERFAMILY SSF46785 17 113 8.79E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1099 e5b63b7b87e694c70f155e7eda8285bc 125 Gene3D G3DSA:1.10.10.10 1 118 9.7E-40 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 Pfam PF00772 DnaB-like helicase N terminal domain 4 99 3.3E-21 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 SUPERFAMILY SSF52540 174 439 2.52E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 Gene3D G3DSA:1.10.860.10 1 118 3.6E-26 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 SUPERFAMILY SSF48024 4 107 1.14E-20 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 4 448 3.6E-143 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 Pfam PF03796 DnaB-like helicase C terminal domain 174 447 3.6E-100 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 SJPD1_1980 2a24f94ee4f2581048a00317ac0f3a5d 476 Gene3D G3DSA:3.40.50.300 148 448 2.8E-103 T 13-10-2018 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 1 100 26.304 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 Gene3D G3DSA:3.30.70.600 1 100 5.2E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 27 42 - T 13-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 2 99 9.1E-43 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 PRINTS PR00971 Ribosomal protein S10 family signature 59 73 2.9E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 PRINTS PR00971 Ribosomal protein S10 family signature 38 53 2.9E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 PRINTS PR00971 Ribosomal protein S10 family signature 3 16 2.9E-20 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 Pfam PF00338 Ribosomal protein S10p/S20e 5 98 1.7E-35 T 13-10-2018 IPR027486 Ribosomal protein S10 domain SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 SMART SM01403 5 99 4.3E-50 T 13-10-2018 IPR027486 Ribosomal protein S10 domain SJPD1_2439 2e311ab2068b96c4476dad354999a222 103 SUPERFAMILY SSF54999 3 98 1.31E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily SJPD1_2735 e2ec2296721595666def99f3febcf906 378 Pfam PF12704 MacB-like periplasmic core domain 18 233 2.3E-9 T 13-10-2018 IPR025857 MacB-like periplasmic core domain SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 2 457 16.971 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PIRSF PIRSF002869 1 468 5.5E-121 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 124 148 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 32 51 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 51 67 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 410 427 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 260 286 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 358 377 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 PRINTS PR01806 Virulence factor MviN signature 148 169 5.6E-54 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 453 1.4E-112 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_1452 987bc6a52c79e6c86ba909fe821f6b3d 469 Pfam PF03023 MviN-like protein 28 466 1.0E-108 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ SJPD1_2889 4cb78fc6a9fb3482df85be72ede587a0 363 Gene3D G3DSA:1.20.1250.20 181 363 4.8E-22 T 13-10-2018 SJPD1_2889 4cb78fc6a9fb3482df85be72ede587a0 363 Gene3D G3DSA:1.20.1250.20 2 177 2.3E-11 T 13-10-2018 SJPD1_2889 4cb78fc6a9fb3482df85be72ede587a0 363 PIRSF PIRSF004925 1 363 2.8E-65 T 13-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter SJPD1_2889 4cb78fc6a9fb3482df85be72ede587a0 363 SUPERFAMILY SSF103473 4 360 4.58E-26 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2889 4cb78fc6a9fb3482df85be72ede587a0 363 Pfam PF12832 MFS_1 like family 5 340 2.3E-32 T 13-10-2018 IPR024989 Major facilitator superfamily associated domain SJPD1_1655 c81890dcd4df4989d093c91be1226b72 467 SUPERFAMILY SSF116726 146 213 1.96E-7 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_1655 c81890dcd4df4989d093c91be1226b72 467 Gene3D G3DSA:3.30.70.1450 137 217 1.6E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_1655 c81890dcd4df4989d093c91be1226b72 467 Pfam PF02080 TrkA-C domain 147 212 3.8E-7 T 13-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 SUPERFAMILY SSF47384 339 411 5.49E-9 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 Gene3D G3DSA:1.10.287.130 328 410 4.1E-12 T 13-10-2018 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 456 565 6.6E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 512 8.1E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 526 8.1E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 545 8.1E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 SUPERFAMILY SSF55785 197 318 3.66E-10 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 Gene3D G3DSA:3.40.50.2300 73 150 4.4E-7 T 13-10-2018 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 SUPERFAMILY SSF55874 413 563 9.3E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 Gene3D G3DSA:3.30.450.20 203 327 1.3E-13 T 13-10-2018 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 Gene3D G3DSA:3.40.50.2300 104 136 4.4E-7 T 13-10-2018 SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 SMART SM00387 454 567 8.1E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1647 9beb87f79c9935e96c058969c193cfb2 570 Gene3D G3DSA:3.30.565.10 412 567 2.8E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1164 576041f101d3734265f1d31c7da84001 155 Pfam PF04073 Aminoacyl-tRNA editing domain 27 137 4.4E-23 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1164 576041f101d3734265f1d31c7da84001 155 SUPERFAMILY SSF55826 4 145 9.42E-32 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_1164 576041f101d3734265f1d31c7da84001 155 Gene3D G3DSA:3.90.960.10 1 154 1.7E-35 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 SJPD1_0836 2403ff80d7f5611e8a33a59ac2201533 219 Gene3D G3DSA:3.90.1720.10 20 178 9.7E-8 T 13-10-2018 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Pfam PF00384 Molybdopterin oxidoreductase 326 405 9.1E-6 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Pfam PF00384 Molybdopterin oxidoreductase 124 298 7.4E-12 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Gene3D G3DSA:2.40.40.20 511 581 7.4E-6 T 13-10-2018 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Gene3D G3DSA:3.40.228.10 113 472 1.4E-57 T 13-10-2018 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 SUPERFAMILY SSF53706 3 472 3.93E-68 T 13-10-2018 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Gene3D G3DSA:3.30.2070.10 380 453 1.4E-57 T 13-10-2018 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Pfam PF01568 Molydopterin dinucleotide binding domain 512 571 5.1E-6 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 Gene3D G3DSA:3.40.50.740 62 424 1.4E-57 T 13-10-2018 SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 SUPERFAMILY SSF50692 478 580 8.59E-10 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily SJPD1_1876 b17bab7154c7e98081914b6c83efd048 581 SMART SM00926 1 49 8.2E-4 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0641 d11ed3f117ca6b77fa8fd83de193a3db 241 SUPERFAMILY SSF56655 23 212 7.59E-24 T 13-10-2018 SJPD1_0641 d11ed3f117ca6b77fa8fd83de193a3db 241 Pfam PF00459 Inositol monophosphatase family 55 209 4.3E-9 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 SJPD1_0641 d11ed3f117ca6b77fa8fd83de193a3db 241 Gene3D G3DSA:3.30.540.10 4 132 7.2E-17 T 13-10-2018 SJPD1_1611 00822f3ad5be044ee1a17701aa439341 301 SUPERFAMILY SSF53067 126 296 8.29E-29 T 13-10-2018 SJPD1_1611 00822f3ad5be044ee1a17701aa439341 301 Pfam PF02541 Ppx/GppA phosphatase family 25 293 6.4E-35 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 SJPD1_1611 00822f3ad5be044ee1a17701aa439341 301 Gene3D G3DSA:3.30.420.150 124 300 1.8E-35 T 13-10-2018 SJPD1_1611 00822f3ad5be044ee1a17701aa439341 301 Gene3D G3DSA:3.30.420.40 3 118 4.8E-21 T 13-10-2018 SJPD1_1611 00822f3ad5be044ee1a17701aa439341 301 SUPERFAMILY SSF53067 5 116 5.18E-19 T 13-10-2018 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Pfam PF13484 4Fe-4S double cluster binding domain 691 762 2.4E-9 T 13-10-2018 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Pfam PF10371 Domain of unknown function 637 680 1.3E-19 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Gene3D G3DSA:3.40.50.970 2 258 3.0E-102 T 13-10-2018 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 SUPERFAMILY SSF52518 794 1183 1.0E-123 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Gene3D G3DSA:3.40.50.920 259 414 2.0E-54 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Gene3D G3DSA:3.40.50.970 793 1178 3.8E-155 T 13-10-2018 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 5 1175 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 943 1073 1.6E-8 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Gene3D G3DSA:3.40.920.10 415 625 1.7E-81 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 18 247 9.0E-75 T 13-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 750 761 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Gene3D G3DSA:3.30.70.20 672 790 2.1E-40 T 13-10-2018 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 PIRSF PIRSF000159 1 1185 0.0 T 13-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 269 363 8.6E-14 T 13-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 SUPERFAMILY SSF54862 674 764 1.0E-17 T 13-10-2018 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 SUPERFAMILY SSF52922 259 411 1.32E-45 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 425 608 8.8E-28 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 SUPERFAMILY SSF52518 5 258 1.06E-72 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 SMART SM00890 625 682 8.3E-23 T 13-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 SJPD1_2361 8378cb52d6340c64e3ded3106fe44a8b 1190 SUPERFAMILY SSF53323 416 669 1.44E-74 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 SJPD1_2158 5f5f5b1c27e1c58077006f8125c86bf9 405 SMART SM00267 226 405 1.1E-30 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2158 5f5f5b1c27e1c58077006f8125c86bf9 405 SUPERFAMILY SSF55073 241 403 9.42E-32 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2158 5f5f5b1c27e1c58077006f8125c86bf9 405 Gene3D G3DSA:3.30.70.270 227 404 1.5E-40 T 13-10-2018 SJPD1_2158 5f5f5b1c27e1c58077006f8125c86bf9 405 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 234 402 1.2E-31 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2158 5f5f5b1c27e1c58077006f8125c86bf9 405 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 400 2.1E-29 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2729 45e80ef1aedcb6f9a0570e625a9f4bcf 251 PIRSF PIRSF005426 1 249 3.2E-61 T 13-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 SJPD1_2729 45e80ef1aedcb6f9a0570e625a9f4bcf 251 SUPERFAMILY SSF55469 3 248 3.27E-46 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_2729 45e80ef1aedcb6f9a0570e625a9f4bcf 251 Pfam PF00881 Nitroreductase family 10 164 6.7E-19 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 SJPD1_2729 45e80ef1aedcb6f9a0570e625a9f4bcf 251 Gene3D G3DSA:3.40.109.10 3 251 5.8E-51 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_1618 61a44542c10d5bd60282e52520df2033 446 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 40 430 6.3E-70 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1618 61a44542c10d5bd60282e52520df2033 446 Gene3D G3DSA:3.40.50.12380 174 438 1.0E-66 T 13-10-2018 SJPD1_1618 61a44542c10d5bd60282e52520df2033 446 Gene3D G3DSA:3.40.50.1980 27 173 4.9E-30 T 13-10-2018 SJPD1_1618 61a44542c10d5bd60282e52520df2033 446 SUPERFAMILY SSF53807 16 440 4.58E-87 T 13-10-2018 SJPD1_2166 05448a0b6bc4e8274dd8cd90dc878e95 188 SMART SM00867 22 186 2.8E-57 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like SJPD1_2166 05448a0b6bc4e8274dd8cd90dc878e95 188 SUPERFAMILY SSF101874 22 186 2.88E-47 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily SJPD1_2166 05448a0b6bc4e8274dd8cd90dc878e95 188 Pfam PF04264 YceI-like domain 24 185 1.7E-39 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like SJPD1_2166 05448a0b6bc4e8274dd8cd90dc878e95 188 Gene3D G3DSA:2.40.128.110 21 186 9.0E-45 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily SJPD1_0847 3e285e01f22e8814c1d8063974dacf54 793 Pfam PF01578 Cytochrome C assembly protein 553 753 2.9E-36 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 SJPD1_0847 3e285e01f22e8814c1d8063974dacf54 793 Pfam PF05140 ResB-like family 75 181 1.0E-20 T 13-10-2018 IPR007816 ResB-like domain SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 Pfam PF01739 CheR methyltransferase, SAM binding domain 91 266 5.5E-44 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 Gene3D G3DSA:3.40.50.150 90 278 4.8E-48 T 13-10-2018 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 SUPERFAMILY SSF53335 91 268 6.06E-42 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 SMART SM00138 26 276 8.1E-50 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 SUPERFAMILY SSF47757 24 90 2.09E-5 T 13-10-2018 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 PRINTS PR00996 Glutamate methyltransferase family signature 47 60 2.4E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 PRINTS PR00996 Glutamate methyltransferase family signature 149 165 2.4E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 PRINTS PR00996 Glutamate methyltransferase family signature 236 259 2.4E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 PRINTS PR00996 Glutamate methyltransferase family signature 84 96 2.4E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 PRINTS PR00996 Glutamate methyltransferase family signature 116 136 2.4E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1125 909a70d3ca49117c1c5289d57e6c3aa4 280 PRINTS PR00996 Glutamate methyltransferase family signature 217 231 2.4E-30 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 ProSitePatterns PS00455 Putative AMP-binding domain signature. 257 268 - T 13-10-2018 IPR020845 AMP-binding, conserved site SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 23 78 2.2E-18 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 Gene3D G3DSA:3.30.300.30 518 647 5.7E-26 T 13-10-2018 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 611 1.0E-21 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 SUPERFAMILY SSF56801 9 642 7.59E-176 T 13-10-2018 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 646 50.227 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 18 644 7.3E-295 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 Gene3D G3DSA:3.40.50.12780 47 515 7.6E-111 T 13-10-2018 SJPD1_1950 b31a3acdd5652ed5408d9ffdeb0ccd78 648 Pfam PF00501 AMP-binding enzyme 82 522 3.8E-93 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_2793 66de5926610ae946ef84923e66f255ba 373 PIRSF PIRSF000390 1 369 2.9E-108 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_2793 66de5926610ae946ef84923e66f255ba 373 Gene3D G3DSA:3.90.1150.10 243 369 3.1E-33 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2793 66de5926610ae946ef84923e66f255ba 373 TIGRFAM TIGR03588 PseC: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase 1 365 7.8E-148 T 13-10-2018 IPR020026 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase SJPD1_2793 66de5926610ae946ef84923e66f255ba 373 Gene3D G3DSA:3.40.640.10 1 241 2.9E-91 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2793 66de5926610ae946ef84923e66f255ba 373 SUPERFAMILY SSF53383 2 366 3.94E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2793 66de5926610ae946ef84923e66f255ba 373 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 9 361 2.8E-113 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_2237 5cb9f3b85862f428a79f417f2e42825c 191 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 178 1.0E-62 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 SJPD1_2237 5cb9f3b85862f428a79f417f2e42825c 191 SUPERFAMILY SSF51182 1 185 1.44E-76 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_2237 5cb9f3b85862f428a79f417f2e42825c 191 Gene3D G3DSA:2.60.120.10 1 186 1.8E-73 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2237 5cb9f3b85862f428a79f417f2e42825c 191 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 178 6.9E-73 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 SJPD1_2237 5cb9f3b85862f428a79f417f2e42825c 191 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 4 179 1.1E-74 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 171 555 5.8E-141 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 Hamap MF_01397 NADH-quinone oxidoreductase subunit C/D [nuoC]. 17 555 46.698 T 13-10-2018 IPR026662 NADH-quinone oxidoreductase subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 Gene3D G3DSA:3.30.460.80 1 122 3.0E-25 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 153 555 43.057 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 SUPERFAMILY SSF143243 4 185 1.96E-42 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 77 138 7.0E-12 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 22 142 1.1E-33 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 285 555 1.1E-103 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 Gene3D G3DSA:1.10.645.20 170 555 1.4E-146 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0476 9ceee4976e4c1ed8ac75a6d3dfa90edc 555 SUPERFAMILY SSF56762 181 555 6.67E-114 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1545 e0f0b42089f6b93aa517121bff12848c 157 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 2.9E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1545 e0f0b42089f6b93aa517121bff12848c 157 SUPERFAMILY SSF46689 4 74 1.13E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1545 e0f0b42089f6b93aa517121bff12848c 157 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 7.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1545 e0f0b42089f6b93aa517121bff12848c 157 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 7.5E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1545 e0f0b42089f6b93aa517121bff12848c 157 Gene3D G3DSA:1.10.357.10 10 157 4.0E-23 T 13-10-2018 SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 Pfam PF00482 Type II secretion system (T2SS), protein F 281 403 3.3E-22 T 13-10-2018 IPR018076 Type II secretion system F domain SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 Pfam PF00482 Type II secretion system (T2SS), protein F 78 200 4.0E-26 T 13-10-2018 IPR018076 Type II secretion system F domain SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 Gene3D G3DSA:1.20.81.30 61 179 4.0E-23 T 13-10-2018 SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 172 200 1.0E-9 T 13-10-2018 IPR003004 GspF/PilC family SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 376 390 1.0E-9 T 13-10-2018 IPR003004 GspF/PilC family SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 392 411 1.0E-9 T 13-10-2018 IPR003004 GspF/PilC family SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 PRINTS PR00812 Bacterial general secretion pathway protein F signature 73 85 1.0E-9 T 13-10-2018 IPR003004 GspF/PilC family SJPD1_1465 2ee5334a5568c58f4a8f8c374b59920a 413 Gene3D G3DSA:1.20.81.30 265 374 3.4E-23 T 13-10-2018 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 Gene3D G3DSA:1.10.287.950 174 393 8.9E-39 T 13-10-2018 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 SMART SM00283 179 393 3.8E-5 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 246 383 2.4E-28 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 301 330 2.2E-16 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 272 299 2.2E-16 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 194 223 2.2E-16 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1868 fd50adfaf3318f211f92c07cf14b88b6 393 SUPERFAMILY SSF58104 194 385 3.92E-41 T 13-10-2018 SJPD1_2608 6f4619c1909d3894f899a8c60ca64688 235 SUPERFAMILY SSF53448 3 212 6.94E-25 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2608 6f4619c1909d3894f899a8c60ca64688 235 Pfam PF00535 Glycosyl transferase family 2 8 127 2.2E-16 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2608 6f4619c1909d3894f899a8c60ca64688 235 Gene3D G3DSA:3.90.550.10 2 223 4.8E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1910 0f2183ea2dc6bb3bc591d87a6c257196 299 SMART SM00342 209 292 1.4E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1910 0f2183ea2dc6bb3bc591d87a6c257196 299 SUPERFAMILY SSF46689 245 293 1.93E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1910 0f2183ea2dc6bb3bc591d87a6c257196 299 Gene3D G3DSA:1.10.10.60 188 297 2.3E-25 T 13-10-2018 SJPD1_1910 0f2183ea2dc6bb3bc591d87a6c257196 299 Pfam PF12833 Helix-turn-helix domain 216 290 2.2E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1910 0f2183ea2dc6bb3bc591d87a6c257196 299 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 176 8.9E-40 T 13-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal SJPD1_1910 0f2183ea2dc6bb3bc591d87a6c257196 299 SUPERFAMILY SSF46689 193 243 1.57E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 Gene3D G3DSA:3.40.30.10 34 140 2.3E-33 T 13-10-2018 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 SUPERFAMILY SSF52833 26 140 8.73E-37 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 PIRSF PIRSF000077 35 140 9.6E-31 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 Gene3D G3DSA:2.20.28.140 1 33 2.0E-9 T 13-10-2018 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 ProSitePatterns PS00194 Thioredoxin family active site. 57 75 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 Pfam PF00085 Thioredoxin 39 137 1.8E-29 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 PRINTS PR00421 Thioredoxin family signature 104 115 8.0E-9 T 13-10-2018 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 PRINTS PR00421 Thioredoxin family signature 56 64 8.0E-9 T 13-10-2018 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 PRINTS PR00421 Thioredoxin family signature 64 73 8.0E-9 T 13-10-2018 SJPD1_0412 8b9f01f6eefd4a8bdca596cc36324e5f 140 TIGRFAM TIGR01068 thioredoxin: thioredoxin 41 138 6.4E-33 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SJPD1_2758 349173a9073baee7910ae43e2569ca34 292 PIRSF PIRSF002936 1 230 4.3E-88 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 SJPD1_2758 349173a9073baee7910ae43e2569ca34 292 PIRSF PIRSF002936 227 292 3.2E-17 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 SJPD1_2758 349173a9073baee7910ae43e2569ca34 292 Gene3D G3DSA:3.40.50.620 2 226 8.4E-53 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2758 349173a9073baee7910ae43e2569ca34 292 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 25 244 7.0E-39 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 SJPD1_2758 349173a9073baee7910ae43e2569ca34 292 SUPERFAMILY SSF52402 2 225 1.72E-52 T 13-10-2018 SJPD1_2314 fa23ee6a70784d0389229dd88fc0d5e9 380 SUPERFAMILY SSF103473 7 379 2.62E-52 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2314 fa23ee6a70784d0389229dd88fc0d5e9 380 Pfam PF07690 Major Facilitator Superfamily 10 225 1.6E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2314 fa23ee6a70784d0389229dd88fc0d5e9 380 Gene3D G3DSA:1.20.1250.20 1 378 3.7E-43 T 13-10-2018 SJPD1_2107 89cb8291135a1a91f82afe44170c09b6 474 Pfam PF02321 Outer membrane efflux protein 275 456 2.8E-26 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2107 89cb8291135a1a91f82afe44170c09b6 474 Pfam PF02321 Outer membrane efflux protein 61 248 3.6E-25 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2107 89cb8291135a1a91f82afe44170c09b6 474 Gene3D G3DSA:1.20.1600.10 50 462 4.7E-121 T 13-10-2018 SJPD1_2107 89cb8291135a1a91f82afe44170c09b6 474 Gene3D G3DSA:2.20.200.10 96 350 4.7E-121 T 13-10-2018 SJPD1_2107 89cb8291135a1a91f82afe44170c09b6 474 SUPERFAMILY SSF56954 3 463 1.7E-104 T 13-10-2018 SJPD1_2107 89cb8291135a1a91f82afe44170c09b6 474 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 461 1.1E-112 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 SJPD1_2068 6c9a3a76f86961042ab806992dcfe73e 144 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site SJPD1_2068 6c9a3a76f86961042ab806992dcfe73e 144 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 7 138 1.4E-30 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 SJPD1_2068 6c9a3a76f86961042ab806992dcfe73e 144 Pfam PF00460 Flagella basal body rod protein 13 39 3.9E-7 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 SJPD1_2068 6c9a3a76f86961042ab806992dcfe73e 144 PIRSF PIRSF002889 1 141 3.5E-36 T 13-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 Gene3D G3DSA:3.40.50.7700 1 161 1.3E-63 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 4 157 30.203 T 13-10-2018 IPR033747 Class I PurE SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 PIRSF PIRSF001338 1 163 8.3E-62 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 Pfam PF00731 AIR carboxylase 4 146 3.0E-57 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 4 156 1.2E-57 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 SMART SM01001 2 153 3.7E-91 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 SJPD1_2045 cace8cca860bbe8f10e65cf4eea6f1dd 164 SUPERFAMILY SSF52255 3 157 8.5E-60 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 SJPD1_0160 c55617f453ba4061cd7e9d5b0cc5cea3 246 Gene3D G3DSA:3.40.50.300 1 245 2.9E-81 T 13-10-2018 SJPD1_0160 c55617f453ba4061cd7e9d5b0cc5cea3 246 SUPERFAMILY SSF52540 5 239 3.33E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0160 c55617f453ba4061cd7e9d5b0cc5cea3 246 PIRSF PIRSF039085 2 245 2.7E-109 T 13-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 SJPD1_0160 c55617f453ba4061cd7e9d5b0cc5cea3 246 Pfam PF00005 ABC transporter 21 169 9.8E-38 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0160 c55617f453ba4061cd7e9d5b0cc5cea3 246 SMART SM00382 30 225 4.9E-16 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0160 c55617f453ba4061cd7e9d5b0cc5cea3 246 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0446 a1a98352da5bd93769168d7e5f0c0400 67 Pfam PF00892 EamA-like transporter family 21 65 1.6E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 SUPERFAMILY SSF51230 78 150 2.62E-21 T 13-10-2018 IPR011053 Single hybrid motif SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 Pfam PF00364 Biotin-requiring enzyme 78 149 4.0E-19 T 13-10-2018 IPR000089 Biotin/lipoyl attachment SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 152 3.2E-49 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 80 93 5.3E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 97 111 5.3E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 112 125 5.3E-18 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 SJPD1_2783 54c91082f479f1f876ea3ce6c7121214 153 Gene3D G3DSA:2.40.50.100 75 151 1.8E-27 T 13-10-2018 SJPD1_1007 92e6532020e4402987e1122fa599e3af 150 SUPERFAMILY SSF51206 6 127 1.44E-18 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_1007 92e6532020e4402987e1122fa599e3af 150 Pfam PF00027 Cyclic nucleotide-binding domain 27 104 3.0E-9 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_1007 92e6532020e4402987e1122fa599e3af 150 Gene3D G3DSA:2.60.120.10 4 138 1.6E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 250 312 1.2E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 SMART SM00387 359 463 2.1E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 Gene3D G3DSA:1.10.287.130 215 314 1.4E-14 T 13-10-2018 SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 SUPERFAMILY SSF47384 238 317 7.85E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 SMART SM00388 249 316 4.7E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 SUPERFAMILY SSF55874 321 462 1.13E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 362 461 1.1E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 Gene3D G3DSA:3.30.565.10 319 462 3.7E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 9.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 9.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2328 fe11c868d7b16bd3babaaaf826bafefe 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 460 9.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1358 5a27b14d4f9b4924d7acf8c4d3218d11 178 Gene3D G3DSA:3.40.920.10 1 178 1.3E-31 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 SJPD1_1358 5a27b14d4f9b4924d7acf8c4d3218d11 178 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 11 171 7.3E-27 T 13-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 SJPD1_1358 5a27b14d4f9b4924d7acf8c4d3218d11 178 SUPERFAMILY SSF53323 1 173 2.09E-24 T 13-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 SJPD1_1374 eb647309985eea838212050ea942e71b 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 260 6.2E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_1374 eb647309985eea838212050ea942e71b 270 SUPERFAMILY SSF161098 61 249 5.45E-14 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1374 eb647309985eea838212050ea942e71b 270 Gene3D G3DSA:1.10.3720.10 56 265 2.1E-9 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2463 f2b3c79022802f91f64c0cfacf8969c1 167 SUPERFAMILY SSF50341 15 153 3.92E-38 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 SJPD1_2463 f2b3c79022802f91f64c0cfacf8969c1 167 Gene3D G3DSA:2.40.50.180 34 143 1.7E-43 T 13-10-2018 SJPD1_2463 f2b3c79022802f91f64c0cfacf8969c1 167 Pfam PF01584 CheW-like domain 16 151 1.3E-34 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_2463 f2b3c79022802f91f64c0cfacf8969c1 167 SMART SM00260 11 148 8.1E-29 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_2463 f2b3c79022802f91f64c0cfacf8969c1 167 Gene3D G3DSA:2.30.30.40 17 142 1.7E-43 T 13-10-2018 SJPD1_1080 222cb4e0d8d1e4729ccc9c92ed873d2e 225 SUPERFAMILY SSF52540 4 224 9.35E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1080 222cb4e0d8d1e4729ccc9c92ed873d2e 225 Gene3D G3DSA:3.40.50.300 1 225 1.2E-58 T 13-10-2018 SJPD1_1080 222cb4e0d8d1e4729ccc9c92ed873d2e 225 Pfam PF00005 ABC transporter 24 173 2.4E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1080 222cb4e0d8d1e4729ccc9c92ed873d2e 225 SMART SM00382 33 222 1.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1477 04f5a337ecd1f9eda00ca4b1313e42db 127 SUPERFAMILY SSF52821 18 117 2.62E-19 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1477 04f5a337ecd1f9eda00ca4b1313e42db 127 Gene3D G3DSA:3.40.250.10 20 119 9.1E-18 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1477 04f5a337ecd1f9eda00ca4b1313e42db 127 SMART SM00450 19 117 2.1E-11 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_1477 04f5a337ecd1f9eda00ca4b1313e42db 127 Pfam PF00581 Rhodanese-like domain 27 112 2.0E-9 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_0761 1e23192809d07ca55a304527deec3378 123 Pfam PF08291 Peptidase M15 8 109 8.9E-15 T 13-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 SJPD1_0761 1e23192809d07ca55a304527deec3378 123 Gene3D G3DSA:3.30.1380.10 10 117 1.8E-16 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_0761 1e23192809d07ca55a304527deec3378 123 SUPERFAMILY SSF55166 9 117 4.32E-20 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_1056 1e23192809d07ca55a304527deec3378 123 Pfam PF08291 Peptidase M15 8 109 8.9E-15 T 13-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 SJPD1_1056 1e23192809d07ca55a304527deec3378 123 Gene3D G3DSA:3.30.1380.10 10 117 1.8E-16 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_1056 1e23192809d07ca55a304527deec3378 123 SUPERFAMILY SSF55166 9 117 4.32E-20 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 SJPD1_1096 633dfd06fc932ff7d318d7e290064168 155 Pfam PF12821 Threonine/Serine exporter, ThrE 12 145 6.3E-38 T 13-10-2018 IPR024528 Threonine/Serine exporter, ThrE SJPD1_1357 36bb870b9a8edbab14ad7a655556e038 433 Gene3D G3DSA:3.40.50.12780 1 325 9.5E-120 T 13-10-2018 SJPD1_1357 36bb870b9a8edbab14ad7a655556e038 433 Gene3D G3DSA:3.30.300.30 326 432 3.9E-31 T 13-10-2018 SJPD1_1357 36bb870b9a8edbab14ad7a655556e038 433 Pfam PF14535 AMP-binding enzyme C-terminal domain 334 430 4.4E-29 T 13-10-2018 IPR028154 AMP-dependent ligase, C-terminal SJPD1_1357 36bb870b9a8edbab14ad7a655556e038 433 Pfam PF00501 AMP-binding enzyme 77 286 5.1E-14 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_1357 36bb870b9a8edbab14ad7a655556e038 433 PIRSF PIRSF006444 1 432 8.3E-198 T 13-10-2018 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 SJPD1_1357 36bb870b9a8edbab14ad7a655556e038 433 SUPERFAMILY SSF56801 18 396 2.35E-58 T 13-10-2018 SJPD1_1090 170efddb673aa0a18c3c960bc750497f 256 SMART SM00460 151 209 1.4E-12 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1090 170efddb673aa0a18c3c960bc750497f 256 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 7 81 2.0E-9 T 13-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal SJPD1_1090 170efddb673aa0a18c3c960bc750497f 256 Pfam PF01841 Transglutaminase-like superfamily 146 207 9.4E-13 T 13-10-2018 IPR002931 Transglutaminase-like SJPD1_1090 170efddb673aa0a18c3c960bc750497f 256 Gene3D G3DSA:3.10.620.30 77 243 2.3E-26 T 13-10-2018 SJPD1_1090 170efddb673aa0a18c3c960bc750497f 256 SUPERFAMILY SSF54001 121 237 1.68E-20 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 SMART SM00471 49 169 4.0E-7 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 SUPERFAMILY SSF81301 208 369 1.42E-52 T 13-10-2018 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 Pfam PF04607 Region found in RelA / SpoT proteins 254 362 2.0E-34 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 SUPERFAMILY SSF81271 387 460 3.05E-18 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 SMART SM00954 254 363 5.0E-61 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 Pfam PF13328 HD domain 34 191 5.5E-40 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 SUPERFAMILY SSF55021 634 709 6.34E-6 T 13-10-2018 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 Gene3D G3DSA:3.30.460.10 208 343 3.2E-42 T 13-10-2018 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 SUPERFAMILY SSF109604 27 205 7.53E-56 T 13-10-2018 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 Gene3D G3DSA:1.10.3210.10 9 206 2.8E-61 T 13-10-2018 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 Gene3D G3DSA:3.10.20.30 393 466 3.6E-26 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 35 689 2.5E-197 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 SJPD1_0798 3fcd7e480373c716338f034d2eab180e 718 Pfam PF02824 TGS domain 400 459 6.3E-17 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 SUPERFAMILY SSF52540 7 342 4.88E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 Gene3D G3DSA:3.30.450.90 1 103 1.9E-28 T 13-10-2018 SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 197 211 - T 13-10-2018 IPR001482 Type II/IV secretion system protein SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 6 348 2.5E-133 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 SMART SM00382 126 260 0.0017 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 Pfam PF00437 Type II/IV secretion system protein 13 268 1.8E-43 T 13-10-2018 IPR001482 Type II/IV secretion system protein SJPD1_0696 276f6ce51bf55b2f83c1b72c860937fc 355 Gene3D G3DSA:3.40.50.300 104 355 2.2E-94 T 13-10-2018 SJPD1_2040 02db929de11053617c1304d57d97c6c2 383 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 35 196 4.6E-41 T 13-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 SJPD1_2040 02db929de11053617c1304d57d97c6c2 383 Gene3D G3DSA:3.40.50.2000 202 362 2.9E-40 T 13-10-2018 SJPD1_2040 02db929de11053617c1304d57d97c6c2 383 Gene3D G3DSA:3.40.50.11720 29 196 4.5E-32 T 13-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 SJPD1_2040 02db929de11053617c1304d57d97c6c2 383 SUPERFAMILY SSF53756 50 327 2.9E-7 T 13-10-2018 SJPD1_2562 6e832a98a075744518c371aa79b0d65b 261 SUPERFAMILY SSF52540 5 222 8.27E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2562 6e832a98a075744518c371aa79b0d65b 261 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2562 6e832a98a075744518c371aa79b0d65b 261 Gene3D G3DSA:3.40.50.300 1 249 5.0E-57 T 13-10-2018 SJPD1_2562 6e832a98a075744518c371aa79b0d65b 261 Pfam PF00005 ABC transporter 19 167 7.8E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2562 6e832a98a075744518c371aa79b0d65b 261 SMART SM00382 28 233 3.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2620 7847f1bc086b11ca1537ef3382555f98 83 SUPERFAMILY SSF47336 6 82 6.94E-13 T 13-10-2018 IPR036736 ACP-like superfamily SJPD1_2620 7847f1bc086b11ca1537ef3382555f98 83 Gene3D G3DSA:1.10.1200.10 3 83 2.6E-18 T 13-10-2018 IPR036736 ACP-like superfamily SJPD1_2620 7847f1bc086b11ca1537ef3382555f98 83 Pfam PF00550 Phosphopantetheine attachment site 6 79 7.0E-10 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 Gene3D G3DSA:3.30.160.70 1 63 4.6E-13 T 13-10-2018 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 68 147 3.0E-31 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 118 124 - T 13-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 70 148 3.0E-29 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 SUPERFAMILY SSF46767 67 148 4.19E-29 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 5 64 1.5E-9 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 Gene3D G3DSA:1.10.10.10 67 151 8.1E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 5 148 37.64 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 SJPD1_2829 ad37cd0bed0d0ffeeabc1794633ea482 151 SUPERFAMILY SSF53155 1 72 2.35E-18 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 SJPD1_0250 f2a6a9658ef7cb1cfffcbd47a0ff100f 352 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 349 9.3E-37 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 Gene3D G3DSA:1.20.1270.20 30 114 3.0E-24 T 13-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 SUPERFAMILY SSF56821 5 438 7.48E-138 T 13-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 Hamap MF_00069 Hydroxylamine reductase [hcp]. 5 439 15.395 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 35 438 3.1E-149 T 13-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 Gene3D G3DSA:3.40.50.2030 121 267 1.4E-50 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 Pfam PF03063 Prismane/CO dehydrogenase family 5 87 3.6E-14 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 Pfam PF03063 Prismane/CO dehydrogenase family 65 425 5.2E-100 T 13-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_0556 267e20bdd528438327f410176ddeaf90 443 Gene3D G3DSA:3.40.50.2030 268 438 2.8E-55 T 13-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 Gene3D G3DSA:3.20.20.70 1 297 3.5E-118 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 SMART SM01130 4 293 6.9E-131 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 1.4E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 1.4E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 1.4E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 1.4E-34 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 PIRSF PIRSF001365 1 295 6.6E-85 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 292 7.5E-107 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 SUPERFAMILY SSF51569 5 292 1.05E-93 T 13-10-2018 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 136 167 - T 13-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 Pfam PF00701 Dihydrodipicolinate synthetase family 5 291 1.1E-89 T 13-10-2018 IPR002220 DapA-like GO:0016829 SJPD1_1447 dc856d4deafbf6b33fcd29bf12433d39 297 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 4 291 63.007 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Pfam PF08447 PAS fold 428 512 2.8E-12 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SMART SM00052 693 932 1.2E-51 T 13-10-2018 IPR001633 EAL domain SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Pfam PF00563 EAL domain 699 927 2.3E-54 T 13-10-2018 IPR001633 EAL domain SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Gene3D G3DSA:3.20.20.450 695 933 1.2E-64 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 422 523 8.4E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SMART SM00267 519 680 5.9E-13 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Gene3D G3DSA:3.30.70.270 532 694 4.7E-26 T 13-10-2018 SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Pfam PF10442 FIST C domain 220 345 1.4E-17 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SMART SM01204 217 346 1.4E-27 T 13-10-2018 IPR019494 FIST, C-domain Reactome: R-HSA-8951664|Reactome: R-HSA-983168 SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Pfam PF00990 Diguanylate cyclase, GGDEF domain 531 674 3.0E-20 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SUPERFAMILY SSF55785 418 516 7.15E-24 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SUPERFAMILY SSF141868 699 930 5.23E-62 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Gene3D G3DSA:3.30.450.20 405 531 5.3E-23 T 13-10-2018 SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SUPERFAMILY SSF55073 534 679 1.73E-22 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 Pfam PF08495 FIST N domain 29 215 1.7E-28 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 SMART SM00897 27 216 4.0E-23 T 13-10-2018 IPR013702 FIST domain, N-terminal SJPD1_0308 970b40ae6187384b53fc23b83db7da75 934 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 528 674 5.8E-18 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1266 14ca6293dd97f731c12fa25b648c966f 298 Pfam PF00892 EamA-like transporter family 141 279 5.8E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1266 14ca6293dd97f731c12fa25b648c966f 298 Pfam PF00892 EamA-like transporter family 7 131 2.6E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1266 14ca6293dd97f731c12fa25b648c966f 298 SUPERFAMILY SSF103481 196 284 3.4E-12 T 13-10-2018 SJPD1_1266 14ca6293dd97f731c12fa25b648c966f 298 SUPERFAMILY SSF103481 41 131 9.02E-8 T 13-10-2018 SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 439 544 9.5E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 Gene3D G3DSA:3.30.565.10 394 547 3.4E-20 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 Gene3D G3DSA:1.10.287.130 311 391 7.7E-7 T 13-10-2018 SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 Gene3D G3DSA:3.30.450.20 139 272 7.2E-14 T 13-10-2018 SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 SUPERFAMILY SSF55874 391 544 4.73E-18 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 SUPERFAMILY SSF47384 317 393 1.0E-4 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 SMART SM00387 436 548 3.4E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1495 6fa515654506bcf87bb500ccb45b3553 560 Pfam PF02743 Cache domain 36 258 4.5E-16 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_2165 d199aae6b72ebd7c6376b8094169aa6f 156 PIRSF PIRSF006162 1 151 4.9E-42 T 13-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 SJPD1_2165 d199aae6b72ebd7c6376b8094169aa6f 156 Pfam PF04608 Phosphatidylglycerophosphatase A 4 141 4.8E-43 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 SJPD1_2165 d199aae6b72ebd7c6376b8094169aa6f 156 SUPERFAMILY SSF101307 4 141 2.49E-33 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 Gene3D G3DSA:3.30.1490.70 30 182 1.4E-47 T 13-10-2018 SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 Gene3D G3DSA:3.30.470.30 44 142 1.4E-47 T 13-10-2018 SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 Pfam PF14743 DNA ligase OB-like domain 204 268 1.4E-26 T 13-10-2018 IPR029319 DNA ligase, OB-like domain SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 Gene3D G3DSA:2.40.50.140 190 272 2.3E-10 T 13-10-2018 SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 Pfam PF01068 ATP dependent DNA ligase domain 37 190 4.6E-10 T 13-10-2018 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 SUPERFAMILY SSF50249 165 268 3.2E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_2238 21407d62c7dc267b5b826f7463e66ee6 272 SUPERFAMILY SSF56091 23 190 5.35E-35 T 13-10-2018 SJPD1_1755 ee11f591320c0f1f1444d5c9efa89224 324 SMART SM01245 3 54 1.8E-18 T 13-10-2018 IPR032782 Jag, N-terminal SJPD1_1755 ee11f591320c0f1f1444d5c9efa89224 324 Gene3D G3DSA:3.30.30.80 1 54 1.6E-14 T 13-10-2018 IPR038247 Jag, N-terminal domain superfamily SJPD1_1755 ee11f591320c0f1f1444d5c9efa89224 324 Gene3D G3DSA:3.30.300.20 171 250 4.6E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta SJPD1_1755 ee11f591320c0f1f1444d5c9efa89224 324 Pfam PF14804 Jag N-terminus 4 52 1.5E-14 T 13-10-2018 IPR032782 Jag, N-terminal SJPD1_1755 ee11f591320c0f1f1444d5c9efa89224 324 Gene3D G3DSA:3.30.1370.180 251 322 5.5E-34 T 13-10-2018 SJPD1_0843 dd59928265a385165779c3710633f0c8 266 Pfam PF13531 Bacterial extracellular solute-binding protein 27 253 2.9E-24 T 13-10-2018 SJPD1_0843 dd59928265a385165779c3710633f0c8 266 SUPERFAMILY SSF53850 26 256 2.8E-30 T 13-10-2018 SJPD1_0843 dd59928265a385165779c3710633f0c8 266 Gene3D G3DSA:3.40.190.10 34 245 4.6E-24 T 13-10-2018 SJPD1_0843 dd59928265a385165779c3710633f0c8 266 Gene3D G3DSA:3.40.190.10 109 218 4.6E-24 T 13-10-2018 SJPD1_0814 77718140cd0b70508a422e04a0fe48e2 165 Gene3D G3DSA:3.40.50.1000 1 163 8.5E-49 T 13-10-2018 IPR023214 HAD superfamily SJPD1_0814 77718140cd0b70508a422e04a0fe48e2 165 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 117 3.2E-12 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 SJPD1_0814 77718140cd0b70508a422e04a0fe48e2 165 SUPERFAMILY SSF56784 1 151 1.05E-36 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_0814 77718140cd0b70508a422e04a0fe48e2 165 Pfam PF08282 haloacid dehalogenase-like hydrolase 78 136 3.2E-9 T 13-10-2018 SJPD1_0814 77718140cd0b70508a422e04a0fe48e2 165 PIRSF PIRSF006118 1 165 1.4E-61 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 SJPD1_0814 77718140cd0b70508a422e04a0fe48e2 165 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 2 155 1.3E-55 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 SJPD1_0285 5c0b6d6482ca960c2fcf944f40a0b909 314 Gene3D G3DSA:3.90.1640.10 1 196 9.3E-51 T 13-10-2018 SJPD1_0285 5c0b6d6482ca960c2fcf944f40a0b909 314 Gene3D G3DSA:3.10.310.30 197 314 2.7E-28 T 13-10-2018 SJPD1_0285 5c0b6d6482ca960c2fcf944f40a0b909 314 Pfam PF01368 DHH family 14 150 4.1E-14 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 SJPD1_0285 5c0b6d6482ca960c2fcf944f40a0b909 314 Pfam PF02272 DHHA1 domain 227 297 2.7E-11 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 SJPD1_0285 5c0b6d6482ca960c2fcf944f40a0b909 314 SUPERFAMILY SSF64182 13 294 2.22E-58 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 SUPERFAMILY SSF103473 13 379 2.22E-60 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 Gene3D G3DSA:1.20.1250.20 11 378 6.2E-64 T 13-10-2018 SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 PRINTS PR01035 Tetracycline resistance protein signature 133 155 9.9E-16 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 PRINTS PR01035 Tetracycline resistance protein signature 20 36 9.9E-16 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 PRINTS PR01035 Tetracycline resistance protein signature 161 181 9.9E-16 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 PRINTS PR01035 Tetracycline resistance protein signature 77 101 9.9E-16 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2549 6ee2cb691d9941550db817a0189f82ce 383 Pfam PF07690 Major Facilitator Superfamily 15 342 1.2E-42 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2709 e071e58e96eeb8d2159de1c6c48e074c 162 Gene3D G3DSA:3.40.50.450 1 161 3.5E-50 T 13-10-2018 SJPD1_2709 e071e58e96eeb8d2159de1c6c48e074c 162 Pfam PF05014 Nucleoside 2-deoxyribosyltransferase 4 140 2.7E-43 T 13-10-2018 IPR007710 Nucleoside 2-deoxyribosyltransferase Reactome: R-HSA-74259 SJPD1_2709 e071e58e96eeb8d2159de1c6c48e074c 162 SUPERFAMILY SSF52309 1 145 1.32E-41 T 13-10-2018 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 PIRSF PIRSF001619 1 280 3.9E-80 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 SMART SM00876 185 275 2.6E-20 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 Gene3D G3DSA:3.20.20.70 1 278 6.1E-85 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 Pfam PF04055 Radical SAM superfamily 16 173 2.5E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 201 274 3.8E-12 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 SMART SM00729 8 213 5.3E-27 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 SUPERFAMILY SSF102114 4 275 1.31E-53 T 13-10-2018 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 TIGRFAM TIGR00433 bioB: biotin synthase 2 274 7.4E-86 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 SJPD1_2805 ca23f1a13759e6c4ac526465d696f1fa 281 Hamap MF_01694 Biotin synthase [bioB]. 2 276 32.403 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 SJPD1_2443 05d8ed91cc1401a0239d5eaff74fb6bb 75 SUPERFAMILY SSF50037 4 74 1.92E-14 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal SJPD1_2443 05d8ed91cc1401a0239d5eaff74fb6bb 75 Gene3D G3DSA:2.30.30.90 1 75 2.6E-17 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain SJPD1_2443 05d8ed91cc1401a0239d5eaff74fb6bb 75 Pfam PF04023 FeoA domain 4 73 5.7E-14 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 SJPD1_2443 05d8ed91cc1401a0239d5eaff74fb6bb 75 SMART SM00899 2 74 7.9E-15 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 SJPD1_1306 9de1cb4529fce375e11a5289bc77f76f 262 Gene3D G3DSA:1.10.10.1880 176 247 3.0E-17 T 13-10-2018 SJPD1_1306 9de1cb4529fce375e11a5289bc77f76f 262 Pfam PF01936 NYN domain 9 142 3.7E-31 T 13-10-2018 IPR021139 NYN domain, limkain-b1-type SJPD1_1306 9de1cb4529fce375e11a5289bc77f76f 262 Gene3D G3DSA:3.40.50.1010 1 147 1.3E-17 T 13-10-2018 SJPD1_1306 9de1cb4529fce375e11a5289bc77f76f 262 Pfam PF12872 OST-HTH/LOTUS domain 172 239 1.1E-12 T 13-10-2018 IPR025605 OST-HTH/LOTUS domain SJPD1_1661 0a588fa9ce4a580b3501a39544a169b1 120 Gene3D G3DSA:3.40.30.10 4 103 8.4E-11 T 13-10-2018 SJPD1_1661 0a588fa9ce4a580b3501a39544a169b1 120 Pfam PF00085 Thioredoxin 18 99 1.6E-8 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 SJPD1_1661 0a588fa9ce4a580b3501a39544a169b1 120 SUPERFAMILY SSF52833 3 98 2.53E-11 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0463 c983d93c90b8b80c281f7d338b6acce8 164 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 117 128 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0463 c983d93c90b8b80c281f7d338b6acce8 164 Pfam PF12838 4Fe-4S dicluster domain 75 131 2.4E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0463 c983d93c90b8b80c281f7d338b6acce8 164 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 16 164 27.206 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0463 c983d93c90b8b80c281f7d338b6acce8 164 SUPERFAMILY SSF54862 55 159 5.86E-20 T 13-10-2018 SJPD1_0463 c983d93c90b8b80c281f7d338b6acce8 164 Gene3D G3DSA:3.30.70.3270 48 164 1.8E-32 T 13-10-2018 SJPD1_2652 74cabb227438ab47b161654983e84aa3 404 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 4 137 8.4E-33 T 13-10-2018 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 SJPD1_2652 74cabb227438ab47b161654983e84aa3 404 Gene3D G3DSA:3.40.50.720 5 390 9.6E-160 T 13-10-2018 SJPD1_2652 74cabb227438ab47b161654983e84aa3 404 Gene3D G3DSA:3.30.360.10 151 347 9.6E-160 T 13-10-2018 SJPD1_2652 74cabb227438ab47b161654983e84aa3 404 SUPERFAMILY SSF51735 2 188 1.52E-16 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2652 74cabb227438ab47b161654983e84aa3 404 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 141 388 3.8E-38 T 13-10-2018 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 SJPD1_1094 5abb2281bce2da01ad4b0337851ff179 157 Gene3D G3DSA:1.20.120.50 2 131 6.3E-34 T 13-10-2018 IPR035938 Hemerythrin-like superfamily SJPD1_1094 5abb2281bce2da01ad4b0337851ff179 157 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 5 126 4.1E-33 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 SJPD1_1094 5abb2281bce2da01ad4b0337851ff179 157 SUPERFAMILY SSF47188 1 125 9.55E-30 T 13-10-2018 IPR035938 Hemerythrin-like superfamily SJPD1_1094 5abb2281bce2da01ad4b0337851ff179 157 Pfam PF01814 Hemerythrin HHE cation binding domain 13 124 2.3E-9 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 Pfam PF00425 chorismate binding enzyme 69 314 3.4E-61 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 Gene3D G3DSA:3.60.120.10 9 319 2.7E-72 T 13-10-2018 IPR005801 ADC synthase GO:0009058 SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 SUPERFAMILY SSF56322 51 316 1.44E-66 T 13-10-2018 IPR005801 ADC synthase GO:0009058 SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 PRINTS PR00095 Anthranilate synthase component I signature 173 186 1.6E-8 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 PRINTS PR00095 Anthranilate synthase component I signature 257 271 1.6E-8 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 PRINTS PR00095 Anthranilate synthase component I signature 271 285 1.6E-8 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_2025 ef05fc3617d7d742dfda60ff55a1bd23 320 PRINTS PR00095 Anthranilate synthase component I signature 159 172 1.6E-8 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 SJPD1_1927 8fe4b5c0c78ed9603ba018cec18768bf 138 Pfam PF09086 Domain of unknown function (DUF1924) 41 135 4.3E-37 T 13-10-2018 IPR015170 Protein of unknown function DUF1924 SJPD1_1927 8fe4b5c0c78ed9603ba018cec18768bf 138 SUPERFAMILY SSF46626 35 137 4.22E-27 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1927 8fe4b5c0c78ed9603ba018cec18768bf 138 Gene3D G3DSA:1.10.760.10 21 138 3.7E-43 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1590 f6b2b4f22c14da488715e4a5cb5808da 92 SUPERFAMILY SSF46565 13 72 8.37E-11 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1590 f6b2b4f22c14da488715e4a5cb5808da 92 Pfam PF00226 DnaJ domain 16 63 1.0E-7 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1590 f6b2b4f22c14da488715e4a5cb5808da 92 Gene3D G3DSA:1.10.287.110 1 78 1.4E-11 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1590 f6b2b4f22c14da488715e4a5cb5808da 92 SMART SM00271 11 66 0.0042 T 13-10-2018 IPR001623 DnaJ domain SJPD1_2635 a9eaeea3f28e6368b3bfc19a0ccdf6de 207 Pfam PF09347 Domain of unknown function (DUF1989) 13 178 1.8E-62 T 13-10-2018 IPR018959 Protein of unknown function DUF1989 SJPD1_2635 a9eaeea3f28e6368b3bfc19a0ccdf6de 207 TIGRFAM TIGR03424 urea_degr_1: urea carboxylase-associated protein 1 8 204 6.1E-105 T 13-10-2018 IPR017791 Urea carboxylase-associated protein 1 SJPD1_0227 86f38d8b131d74db606f13278fb2e708 146 Gene3D G3DSA:3.90.870.10 6 146 5.4E-6 T 13-10-2018 SJPD1_0227 86f38d8b131d74db606f13278fb2e708 146 SUPERFAMILY SSF55821 10 146 5.49E-11 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily SJPD1_0138 5517b5589214d32e3daf168190335c6c 376 SUPERFAMILY SSF52091 8 98 9.61E-8 T 13-10-2018 IPR036513 STAS domain superfamily SJPD1_0138 5517b5589214d32e3daf168190335c6c 376 Gene3D G3DSA:3.30.750.24 4 100 1.8E-5 T 13-10-2018 IPR036513 STAS domain superfamily SJPD1_0138 5517b5589214d32e3daf168190335c6c 376 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 134 372 4.3E-81 T 13-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria SJPD1_0138 5517b5589214d32e3daf168190335c6c 376 Pfam PF02405 Permease MlaE 160 370 1.3E-70 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 SJPD1_1206 ca2de5ac533544477948768e797743f0 525 Gene3D G3DSA:1.20.210.10 5 400 2.4E-14 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1206 ca2de5ac533544477948768e797743f0 525 SUPERFAMILY SSF81442 12 392 3.92E-9 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1206 ca2de5ac533544477948768e797743f0 525 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 11 360 3.6E-10 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 SUPERFAMILY SSF46785 3 112 1.39E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.0E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 Gene3D G3DSA:1.10.10.10 2 87 4.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 Pfam PF03466 LysR substrate binding domain 95 294 8.0E-19 T 13-10-2018 IPR005119 LysR, substrate-binding SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.5E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 Gene3D G3DSA:3.40.190.290 94 300 5.4E-16 T 13-10-2018 SJPD1_2021 e30db541c3c3d5273f0665fe08c3c029 301 SUPERFAMILY SSF53850 94 297 1.66E-18 T 13-10-2018 SJPD1_1241 8d2812423d43c2e040cf655fa44e7394 465 Gene3D G3DSA:2.40.160.10 32 252 2.7E-12 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_1241 8d2812423d43c2e040cf655fa44e7394 465 Gene3D G3DSA:2.40.160.10 256 465 6.5E-12 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_1241 8d2812423d43c2e040cf655fa44e7394 465 Pfam PF05538 Campylobacter major outer membrane protein 1 465 1.1E-8 T 13-10-2018 IPR008439 Campylobacter major outer membrane SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 SUPERFAMILY SSF57802 1 36 1.41E-10 T 13-10-2018 SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 Pfam PF06397 Desulfoferrodoxin, N-terminal domain 3 35 1.1E-11 T 13-10-2018 IPR004462 Desulforodoxin domain GO:0005506 SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 SUPERFAMILY SSF57802 176 212 3.37E-11 T 13-10-2018 SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 Gene3D G3DSA:2.20.28.100 1 35 8.4E-12 T 13-10-2018 IPR038094 Desulforodoxin domain superfamily SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 Gene3D G3DSA:1.20.1260.10 36 170 7.6E-41 T 13-10-2018 IPR012347 Ferritin-like SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 TIGRFAM TIGR00319 desulf_FeS4: desulfoferrodoxin FeS4 iron-binding domain 3 33 8.1E-11 T 13-10-2018 IPR004462 Desulforodoxin domain GO:0005506 SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 Pfam PF02915 Rubrerythrin 44 163 1.8E-21 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 SUPERFAMILY SSF47240 41 171 3.94E-32 T 13-10-2018 IPR009078 Ferritin-like superfamily SJPD1_1680 d71a11315f1fdd3adf3893ebb963031b 216 Gene3D G3DSA:2.20.28.10 172 213 8.4E-15 T 13-10-2018 SJPD1_2024 f1551dda8da65008683690c3bb6d823e 198 Gene3D G3DSA:3.20.10.10 82 187 5.7E-21 T 13-10-2018 SJPD1_2024 f1551dda8da65008683690c3bb6d823e 198 Pfam PF01063 Amino-transferase class IV 99 190 3.2E-11 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 SJPD1_2024 f1551dda8da65008683690c3bb6d823e 198 Gene3D G3DSA:3.30.470.10 6 81 6.9E-12 T 13-10-2018 SJPD1_2024 f1551dda8da65008683690c3bb6d823e 198 SUPERFAMILY SSF56752 10 187 1.57E-21 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 SJPD1_0677 842640487b585349c953a228865c0f13 180 Pfam PF02659 Putative manganese efflux pump 33 178 4.8E-46 T 13-10-2018 IPR003810 Putative manganese efflux pump SJPD1_0677 842640487b585349c953a228865c0f13 180 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 180 23.259 T 13-10-2018 IPR022929 Putative manganese efflux pump MntP SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 Pfam PF00255 Glutathione peroxidase 3 110 2.1E-46 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 59 66 - T 13-10-2018 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 PRINTS PR01011 Glutathione peroxidase family signature 21 38 1.8E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 PRINTS PR01011 Glutathione peroxidase family signature 56 72 1.8E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 PRINTS PR01011 Glutathione peroxidase family signature 122 131 1.8E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 ProSitePatterns PS00460 Glutathione peroxidases active site. 23 38 - T 13-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 PIRSF PIRSF000303 1 158 4.8E-70 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 Gene3D G3DSA:3.40.30.10 1 158 1.5E-73 T 13-10-2018 SJPD1_0336 5b45c7aa8055b2cbce34789f1ed736ec 158 SUPERFAMILY SSF52833 1 156 2.34E-62 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 SUPERFAMILY SSF55021 54 131 1.51E-23 T 13-10-2018 SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 Hamap MF_00476 Nickel-responsive regulator [nikR]. 4 134 26.705 T 13-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 Gene3D G3DSA:3.30.70.1150 47 136 1.6E-31 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 Gene3D G3DSA:1.10.1220.10 11 46 3.3E-15 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 SUPERFAMILY SSF47598 3 50 3.04E-12 T 13-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 43 6.2E-10 T 13-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 SJPD1_1409 0826d3dc0c8838501839f8963390c39b 137 Pfam PF08753 NikR C terminal nickel binding domain 56 130 4.7E-28 T 13-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal SJPD1_0627 dac2b4722a1d34c64391261647ebc38e 195 Pfam PF01618 MotA/TolQ/ExbB proton channel family 84 179 4.1E-28 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel SJPD1_1282 a1a3b39f2c3a644e0923058544ee14aa 136 SUPERFAMILY SSF54427 11 128 2.6E-25 T 13-10-2018 IPR032710 NTF2-like domain superfamily SJPD1_1282 a1a3b39f2c3a644e0923058544ee14aa 136 Pfam PF12680 SnoaL-like domain 17 102 7.2E-9 T 13-10-2018 IPR037401 SnoaL-like domain SJPD1_1282 a1a3b39f2c3a644e0923058544ee14aa 136 Gene3D G3DSA:3.10.450.50 2 134 1.1E-30 T 13-10-2018 SJPD1_2493 86f0609e88774557cd6e72affaa8e910 439 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 78 426 6.3E-84 T 13-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit SJPD1_2493 86f0609e88774557cd6e72affaa8e910 439 Gene3D G3DSA:3.40.50.11900 280 436 1.6E-42 T 13-10-2018 SJPD1_2493 86f0609e88774557cd6e72affaa8e910 439 Gene3D G3DSA:1.20.1270.370 54 264 8.9E-30 T 13-10-2018 SJPD1_2493 86f0609e88774557cd6e72affaa8e910 439 Gene3D G3DSA:3.40.50.11890 71 196 8.9E-30 T 13-10-2018 SJPD1_2633 15cc2a04adc3f98cae5d6f54d8680b82 293 SUPERFAMILY SSF103481 53 136 1.15E-12 T 13-10-2018 SJPD1_2633 15cc2a04adc3f98cae5d6f54d8680b82 293 SUPERFAMILY SSF103481 188 283 1.44E-7 T 13-10-2018 SJPD1_2633 15cc2a04adc3f98cae5d6f54d8680b82 293 Pfam PF00892 EamA-like transporter family 6 135 1.2E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1914 928428ac07c672aacb95a56d474edb97 271 SUPERFAMILY SSF53850 18 247 1.7E-37 T 13-10-2018 SJPD1_1914 928428ac07c672aacb95a56d474edb97 271 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 20 241 1.1E-42 T 13-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 SJPD1_1914 928428ac07c672aacb95a56d474edb97 271 Gene3D G3DSA:3.40.190.10 113 218 4.4E-51 T 13-10-2018 SJPD1_1914 928428ac07c672aacb95a56d474edb97 271 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 25 245 2.3E-53 T 13-10-2018 SJPD1_1914 928428ac07c672aacb95a56d474edb97 271 Gene3D G3DSA:3.40.190.10 25 245 4.4E-51 T 13-10-2018 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 PIRSF PIRSF004762 2 354 3.4E-101 T 13-10-2018 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 Pfam PF04055 Radical SAM superfamily 53 224 1.8E-13 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 TIGRFAM TIGR03700 mena_SCO4494: putative menaquinone biosynthesis radical SAM enzyme, SCO4494 family 4 351 3.2E-144 T 13-10-2018 IPR022432 Aminodeoxyfutalosine synthase GO:0009234 KEGG: 00130+2.5.1.120|MetaCyc: PWY-7371|MetaCyc: PWY-7374 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 TIGRFAM TIGR00423 TIGR00423: radical SAM domain protein, CofH subfamily 45 351 2.8E-114 T 13-10-2018 IPR020050 FO synthase, subunit 2 GO:0016765 KEGG: 00680+2.5.1.77 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 Gene3D G3DSA:3.20.20.70 1 339 5.7E-52 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 SUPERFAMILY SSF102114 12 313 9.68E-40 T 13-10-2018 SJPD1_2127 592e3c36c7f5ebeeef9af31a75b7f60e 354 Hamap MF_00993 Aminodeoxyfutalosine synthase [mqnE]. 1 354 48.238 T 13-10-2018 IPR022432 Aminodeoxyfutalosine synthase GO:0009234 KEGG: 00130+2.5.1.120|MetaCyc: PWY-7371|MetaCyc: PWY-7374 SJPD1_2711 b39e6257a3581f9c2ae3bf861b8ff785 125 Pfam PF05610 Protein of unknown function (DUF779) 15 111 6.0E-36 T 13-10-2018 IPR008497 Protein of unknown function DUF779 SJPD1_2711 b39e6257a3581f9c2ae3bf861b8ff785 125 PIRSF PIRSF009151 1 125 2.0E-37 T 13-10-2018 IPR008497 Protein of unknown function DUF779 SJPD1_1930 b0ce7bdcbb5a4356a526ae2164b2c37b 295 ProSitePatterns PS00161 Isocitrate lyase signature. 120 125 - T 13-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 SJPD1_1930 b0ce7bdcbb5a4356a526ae2164b2c37b 295 SUPERFAMILY SSF51621 7 289 1.3E-97 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 SJPD1_1930 b0ce7bdcbb5a4356a526ae2164b2c37b 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 15 254 4.3E-50 T 13-10-2018 SJPD1_1930 b0ce7bdcbb5a4356a526ae2164b2c37b 295 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 7 290 1.2E-132 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 SJPD1_1930 b0ce7bdcbb5a4356a526ae2164b2c37b 295 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 4 291 47.871 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 SJPD1_1930 b0ce7bdcbb5a4356a526ae2164b2c37b 295 Gene3D G3DSA:3.20.20.60 2 294 6.5E-99 T 13-10-2018 SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 SMART SM00448 3 114 1.6E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 SMART SM00862 148 219 1.0E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 SUPERFAMILY SSF52172 3 179 2.28E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 Gene3D G3DSA:3.40.50.2300 1 125 1.5E-31 T 13-10-2018 SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 Gene3D G3DSA:1.10.10.10 127 221 1.2E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 Pfam PF00072 Response regulator receiver domain 5 114 3.9E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0155 70a91b43a918b1bfd2a16cfd3099b7ea 221 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 219 2.5E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2319 295acedc76def680fc68f016123c6770 288 Gene3D G3DSA:1.10.3720.10 62 286 5.4E-33 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2319 295acedc76def680fc68f016123c6770 288 SUPERFAMILY SSF161098 25 275 1.2E-34 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2319 295acedc76def680fc68f016123c6770 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 275 1.1E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2319 295acedc76def680fc68f016123c6770 288 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 10 279 6.4E-82 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 SJPD1_2167 7778950c57bda1120faa4a75abd995f2 195 SUPERFAMILY SSF54211 2 126 8.34E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold SJPD1_2167 7778950c57bda1120faa4a75abd995f2 195 Gene3D G3DSA:3.30.230.30 1 125 6.6E-35 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily SJPD1_2167 7778950c57bda1120faa4a75abd995f2 195 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 74 103 - T 13-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site SJPD1_2167 7778950c57bda1120faa4a75abd995f2 195 Pfam PF01205 Uncharacterized protein family UPF0029 15 119 5.2E-22 T 13-10-2018 IPR001498 Impact, N-terminal SJPD1_2062 6f6bcb9943f15720fdf0c290e7805653 363 SUPERFAMILY SSF53383 9 362 2.31E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2062 6f6bcb9943f15720fdf0c290e7805653 363 Gene3D G3DSA:3.40.640.10 1 244 7.1E-96 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2062 6f6bcb9943f15720fdf0c290e7805653 363 PIRSF PIRSF000390 1 363 1.1E-104 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_2062 6f6bcb9943f15720fdf0c290e7805653 363 Gene3D G3DSA:3.90.1150.10 247 363 7.1E-36 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2062 6f6bcb9943f15720fdf0c290e7805653 363 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 15 361 5.5E-119 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_2741 74c70a264dfd9f1d840f89645cd2fd66 221 SUPERFAMILY SSF55469 1 219 5.23E-44 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_2741 74c70a264dfd9f1d840f89645cd2fd66 221 Gene3D G3DSA:3.40.109.10 1 221 2.4E-64 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 SJPD1_2741 74c70a264dfd9f1d840f89645cd2fd66 221 Pfam PF00881 Nitroreductase family 8 196 4.1E-30 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 SUPERFAMILY SSF50249 1 106 6.21E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 578 32.428 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Pfam PF02938 GAD domain 310 405 1.4E-21 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Gene3D G3DSA:3.30.1360.30 273 419 4.9E-186 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Gene3D G3DSA:2.40.50.140 1 106 6.5E-29 T 13-10-2018 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 2 576 1.4E-238 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Pfam PF00152 tRNA synthetases class II (D, K and N) 120 552 1.0E-111 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Gene3D G3DSA:3.30.930.10 118 575 4.9E-186 T 13-10-2018 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 PRINTS PR01042 Aspartyl-tRNA synthetase signature 512 526 3.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 PRINTS PR01042 Aspartyl-tRNA synthetase signature 468 484 3.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 PRINTS PR01042 Aspartyl-tRNA synthetase signature 192 204 3.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 PRINTS PR01042 Aspartyl-tRNA synthetase signature 209 222 3.1E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 Pfam PF01336 OB-fold nucleic acid binding domain 18 100 1.7E-13 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 SUPERFAMILY SSF55261 290 419 1.8E-33 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 SJPD1_0804 81ac3b6e5ec19f7ae78d96e258a1a249 582 SUPERFAMILY SSF55681 112 579 1.24E-105 T 13-10-2018 SJPD1_1649 5828b74023b9df9f333d7ffb5e0a79ed 382 Pfam PF07690 Major Facilitator Superfamily 18 344 1.0E-10 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_1649 5828b74023b9df9f333d7ffb5e0a79ed 382 Gene3D G3DSA:1.20.1250.20 12 373 3.8E-16 T 13-10-2018 SJPD1_1649 5828b74023b9df9f333d7ffb5e0a79ed 382 SUPERFAMILY SSF103473 14 380 1.03E-33 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1040 e5d5114e7280970221c5b1d5e51157cf 274 SUPERFAMILY SSF56770 29 163 2.75E-53 T 13-10-2018 SJPD1_1040 e5d5114e7280970221c5b1d5e51157cf 274 Gene3D G3DSA:3.40.50.12280 7 176 1.3E-52 T 13-10-2018 SJPD1_1040 e5d5114e7280970221c5b1d5e51157cf 274 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 41 150 1.0E-25 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1040 e5d5114e7280970221c5b1d5e51157cf 274 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 124 140 - T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2081 eba8f6ec15167b15ccac94a45369a7c1 217 SUPERFAMILY SSF54523 5 109 2.75E-7 T 13-10-2018 SJPD1_0425 24b4eac474e3f7dca11d0961cde02b3b 241 SUPERFAMILY SSF52540 5 233 4.02E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0425 24b4eac474e3f7dca11d0961cde02b3b 241 SMART SM00382 30 215 9.7E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0425 24b4eac474e3f7dca11d0961cde02b3b 241 Gene3D G3DSA:3.40.50.300 1 237 1.1E-60 T 13-10-2018 SJPD1_0425 24b4eac474e3f7dca11d0961cde02b3b 241 PIRSF PIRSF039137 1 237 7.2E-107 T 13-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 SJPD1_0425 24b4eac474e3f7dca11d0961cde02b3b 241 Pfam PF00005 ABC transporter 22 164 2.5E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0425 24b4eac474e3f7dca11d0961cde02b3b 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2441 c83e8baf797ad5cd458d2f341ca13dac 416 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 62 245 2.7E-22 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 SJPD1_2441 c83e8baf797ad5cd458d2f341ca13dac 416 Gene3D G3DSA:3.30.565.10 254 411 2.6E-9 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2441 c83e8baf797ad5cd458d2f341ca13dac 416 Pfam PF13581 Histidine kinase-like ATPase domain 262 408 3.7E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2441 c83e8baf797ad5cd458d2f341ca13dac 416 SMART SM00331 38 247 3.0E-12 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 SJPD1_2441 c83e8baf797ad5cd458d2f341ca13dac 416 Gene3D G3DSA:3.60.40.10 23 248 4.3E-26 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 SJPD1_0774 bdd3d97d090cfae00cc98cd5debc40a5 466 Gene3D G3DSA:2.20.200.10 92 345 1.4E-113 T 13-10-2018 SJPD1_0774 bdd3d97d090cfae00cc98cd5debc40a5 466 SUPERFAMILY SSF56954 2 459 5.36E-100 T 13-10-2018 SJPD1_0774 bdd3d97d090cfae00cc98cd5debc40a5 466 Pfam PF02321 Outer membrane efflux protein 55 245 3.5E-16 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_0774 bdd3d97d090cfae00cc98cd5debc40a5 466 Pfam PF02321 Outer membrane efflux protein 273 454 5.9E-31 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_0774 bdd3d97d090cfae00cc98cd5debc40a5 466 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 456 1.4E-96 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 SJPD1_0774 bdd3d97d090cfae00cc98cd5debc40a5 466 Gene3D G3DSA:1.20.1600.10 45 457 1.4E-113 T 13-10-2018 SJPD1_2157 5014334f1ced374ab079438846a68431 261 SUPERFAMILY SSF69572 48 245 3.66E-55 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 SJPD1_2157 5014334f1ced374ab079438846a68431 261 Gene3D G3DSA:3.40.50.720 47 259 8.9E-49 T 13-10-2018 SJPD1_2157 5014334f1ced374ab079438846a68431 261 Pfam PF00899 ThiF family 50 250 2.1E-39 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SJPD1_2554 a4958ab29189e1c402cddf5ff2d62308 245 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 149 208 2.7E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_2554 a4958ab29189e1c402cddf5ff2d62308 245 SUPERFAMILY SSF46785 130 234 1.84E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2554 a4958ab29189e1c402cddf5ff2d62308 245 Gene3D G3DSA:1.10.10.10 120 245 4.9E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0141 330aebb030f7bd5352ceaa3e11331e0f 201 Pfam PF01914 MarC family integral membrane protein 7 198 2.6E-55 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 SJPD1_2705 e9119f5baf3b0a4d87b360d48cbae5ad 315 SUPERFAMILY SSF53448 1 211 5.55E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2705 e9119f5baf3b0a4d87b360d48cbae5ad 315 Gene3D G3DSA:3.90.550.10 1 199 3.4E-27 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2705 e9119f5baf3b0a4d87b360d48cbae5ad 315 Pfam PF00535 Glycosyl transferase family 2 7 170 8.7E-27 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_1462 5f54ff0fc42bf17fa8dc4e4b2e107274 148 Pfam PF09424 Yqey-like protein 5 147 3.4E-47 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 SJPD1_1462 5f54ff0fc42bf17fa8dc4e4b2e107274 148 Gene3D G3DSA:1.10.1510.10 1 91 3.0E-25 T 13-10-2018 SJPD1_1462 5f54ff0fc42bf17fa8dc4e4b2e107274 148 SUPERFAMILY SSF89095 4 148 1.05E-36 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 SJPD1_1462 5f54ff0fc42bf17fa8dc4e4b2e107274 148 Gene3D G3DSA:1.10.10.410 92 148 1.0E-16 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal SJPD1_0560 b771805359f0b641bd07f80ad3ec6bb6 291 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 30 264 3.8E-66 T 13-10-2018 IPR022488 Polyphosphate kinase-2-related SJPD1_0560 b771805359f0b641bd07f80ad3ec6bb6 291 Gene3D G3DSA:3.40.50.300 3 286 4.8E-107 T 13-10-2018 SJPD1_0560 b771805359f0b641bd07f80ad3ec6bb6 291 PIRSF PIRSF028756 3 291 3.1E-83 T 13-10-2018 IPR016898 Polyphosphate kinase 2 KEGG: 00190+2.7.4.1 SJPD1_0560 b771805359f0b641bd07f80ad3ec6bb6 291 SUPERFAMILY SSF52540 138 256 6.57E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0560 b771805359f0b641bd07f80ad3ec6bb6 291 TIGRFAM TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family 6 279 1.4E-119 T 13-10-2018 IPR022300 Polyphosphate:nucleotide phosphotransferase, PPK2 GO:0006797|GO:0016776 KEGG: 00190+2.7.4.1 SJPD1_0740 abcf40f6682e2683b494268e6a9b3f46 618 SUPERFAMILY SSF58104 309 618 2.49E-59 T 13-10-2018 SJPD1_0740 abcf40f6682e2683b494268e6a9b3f46 618 SMART SM00283 356 617 2.0E-42 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0740 abcf40f6682e2683b494268e6a9b3f46 618 SMART SM00304 290 341 0.0042 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0740 abcf40f6682e2683b494268e6a9b3f46 618 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 423 530 6.8E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0740 abcf40f6682e2683b494268e6a9b3f46 618 Gene3D G3DSA:1.10.287.950 290 618 1.1E-58 T 13-10-2018 SJPD1_0740 abcf40f6682e2683b494268e6a9b3f46 618 SMART SM01358 36 268 2.1E-10 T 13-10-2018 IPR032255 Helical bimodular sensor domain SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.8E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 Pfam PF03466 LysR substrate binding domain 90 293 5.7E-33 T 13-10-2018 IPR005119 LysR, substrate-binding SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 Gene3D G3DSA:1.10.10.10 1 90 2.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 SUPERFAMILY SSF46785 1 82 1.45E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 Gene3D G3DSA:3.40.190.290 91 298 3.5E-46 T 13-10-2018 SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 SUPERFAMILY SSF53850 90 293 2.67E-29 T 13-10-2018 SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_0839 9b89a0e470e1255163a83d8c5cb7f300 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 43.009 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 Gene3D G3DSA:3.40.50.261 240 389 4.2E-51 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 PIRSF PIRSF001554 1 389 4.5E-149 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 Gene3D G3DSA:3.30.470.20 1 234 4.8E-94 T 13-10-2018 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 Pfam PF08442 ATP-grasp domain 2 202 7.2E-79 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 Gene3D G3DSA:3.30.1490.20 21 104 4.8E-94 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 386 3.8E-154 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 SUPERFAMILY SSF52210 240 386 3.14E-47 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 281 - T 13-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 Pfam PF00549 CoA-ligase 262 375 2.0E-19 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 SJPD1_1422 e2f1124e026559e3da4fef7e6cff8c86 389 SUPERFAMILY SSF56059 1 238 4.09E-81 T 13-10-2018 SJPD1_2221 f5b069a11942ed22bd1cfe525e8a8260 240 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 230 3.9E-80 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 SJPD1_2221 f5b069a11942ed22bd1cfe525e8a8260 240 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 234 35.436 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 SJPD1_2221 f5b069a11942ed22bd1cfe525e8a8260 240 SUPERFAMILY SSF51366 1 234 1.01E-67 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_2221 f5b069a11942ed22bd1cfe525e8a8260 240 Pfam PF00977 Histidine biosynthesis protein 3 226 8.1E-76 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 SJPD1_2221 f5b069a11942ed22bd1cfe525e8a8260 240 Gene3D G3DSA:3.20.20.70 3 239 1.2E-80 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 Gene3D G3DSA:1.20.1640.10 126 320 2.9E-9 T 13-10-2018 SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 Pfam PF02355 Protein export membrane protein 113 290 2.7E-65 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 10 294 26.272 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 38 283 3.5E-83 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 PRINTS PR01755 Bacterial translocase SecF protein signature 151 165 3.0E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 PRINTS PR01755 Bacterial translocase SecF protein signature 37 52 3.0E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 PRINTS PR01755 Bacterial translocase SecF protein signature 199 217 3.0E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 PRINTS PR01755 Bacterial translocase SecF protein signature 231 246 3.0E-30 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 Pfam PF07549 SecD/SecF GG Motif 32 59 2.7E-9 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 116 280 2.6E-54 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial SJPD1_2006 30b3b38ce7f48f1af45531f8c1814281 323 SUPERFAMILY SSF82866 123 291 3.01E-36 T 13-10-2018 SJPD1_2245 9872c2efdd30d4b5091387f21cc92ecb 406 Pfam PF04932 O-Antigen ligase 193 342 2.9E-22 T 13-10-2018 IPR007016 O-antigen ligase-related SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 Pfam PF01386 Ribosomal L25p family 2 87 7.7E-20 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 Gene3D G3DSA:2.40.240.10 2 89 7.3E-20 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 2 176 8.6E-46 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 178 20.949 T 13-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 2 89 1.0E-30 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 Gene3D G3DSA:2.170.120.20 97 178 4.7E-17 T 13-10-2018 IPR037121 Ribosomal protein L25, C-terminal SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 100 176 6.0E-18 T 13-10-2018 IPR020057 Ribosomal protein L25, beta domain SJPD1_0248 9596a52e381100f515bf61f0ec3ced6f 178 SUPERFAMILY SSF50715 6 176 6.41E-44 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 SJPD1_2743 d682dc0648d9f823d449b3228f9074fd 156 SUPERFAMILY SSF55729 1 155 2.52E-26 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2743 d682dc0648d9f823d449b3228f9074fd 156 Gene3D G3DSA:3.40.630.30 1 156 1.0E-32 T 13-10-2018 SJPD1_2743 d682dc0648d9f823d449b3228f9074fd 156 Pfam PF13673 Acetyltransferase (GNAT) domain 58 152 1.5E-13 T 13-10-2018 IPR000182 GNAT domain SJPD1_0751 43397d160274344f47b1e6e29a31b619 301 Pfam PF07859 alpha/beta hydrolase fold 78 194 1.0E-13 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 SJPD1_0751 43397d160274344f47b1e6e29a31b619 301 Gene3D G3DSA:3.40.50.1820 23 284 1.4E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0751 43397d160274344f47b1e6e29a31b619 301 SUPERFAMILY SSF53474 55 235 3.67E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2522 7036806b9cd1eb2dbe4b6dddf5178013 293 SUPERFAMILY SSF53300 80 253 5.34E-33 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_2522 7036806b9cd1eb2dbe4b6dddf5178013 293 Gene3D G3DSA:3.40.50.410 82 257 6.4E-44 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_2522 7036806b9cd1eb2dbe4b6dddf5178013 293 SMART SM00327 80 256 1.5E-15 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_2522 7036806b9cd1eb2dbe4b6dddf5178013 293 Pfam PF00092 von Willebrand factor type A domain 85 251 2.7E-20 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_1810 2debbc4a72d4323b9ca0f1ade67fd314 144 PIRSF PIRSF036659 5 144 1.4E-47 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC SJPD1_1810 2debbc4a72d4323b9ca0f1ade67fd314 144 Hamap MF_00287 Probable disulfide formation protein [bdbC]. 8 143 21.519 T 13-10-2018 IPR012187 Disulphide bond formation protein BdbC SJPD1_1810 2debbc4a72d4323b9ca0f1ade67fd314 144 Pfam PF02600 Disulfide bond formation protein DsbB 14 138 7.7E-10 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 SJPD1_1810 2debbc4a72d4323b9ca0f1ade67fd314 144 SUPERFAMILY SSF158442 15 139 1.11E-27 T 13-10-2018 IPR023380 DsbB-like superfamily SJPD1_1810 2debbc4a72d4323b9ca0f1ade67fd314 144 Gene3D G3DSA:1.20.1550.10 1 119 1.2E-10 T 13-10-2018 IPR023380 DsbB-like superfamily SJPD1_1479 9eaae812d31744b8e14f7f67fdefe6f0 81 Gene3D G3DSA:3.10.290.10 1 81 1.4E-22 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 SJPD1_1479 9eaae812d31744b8e14f7f67fdefe6f0 81 SMART SM00363 1 62 7.2E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_1479 9eaae812d31744b8e14f7f67fdefe6f0 81 SUPERFAMILY SSF55174 1 72 2.88E-18 T 13-10-2018 SJPD1_1479 9eaae812d31744b8e14f7f67fdefe6f0 81 Pfam PF01479 S4 domain 1 47 9.7E-9 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_1479 9eaae812d31744b8e14f7f67fdefe6f0 81 PIRSF PIRSF038881 1 81 4.6E-24 T 13-10-2018 IPR025490 RNA-binding protein, HP1423 type SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 SMART SM01240 6 468 0.0 T 13-10-2018 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 7 468 2.9E-161 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 SUPERFAMILY SSF51412 2 472 1.7E-123 T 13-10-2018 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 SUPERFAMILY SSF54631 73 201 2.02E-31 T 13-10-2018 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 Pfam PF00571 CBS domain 95 139 2.2E-10 T 13-10-2018 IPR000644 CBS domain SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 Pfam PF00571 CBS domain 148 201 1.3E-10 T 13-10-2018 IPR000644 CBS domain SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 PIRSF PIRSF000130 1 482 7.6E-207 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 290 302 - T 13-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 7 481 82.871 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 7 448 3.9E-187 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 Gene3D G3DSA:3.20.20.70 1 481 5.1E-216 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 SMART SM00116 95 143 9.6E-10 T 13-10-2018 IPR000644 CBS domain SJPD1_0593 236f18696ca31c33d4dcc96f2062672b 482 SMART SM00116 156 204 3.1E-10 T 13-10-2018 IPR000644 CBS domain SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 Pfam PF00909 Ammonium Transporter Family 43 438 1.4E-122 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 PRINTS PR00342 Rhesus blood group protein signature 138 154 3.8E-8 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 PRINTS PR00342 Rhesus blood group protein signature 232 250 3.8E-8 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 PRINTS PR00342 Rhesus blood group protein signature 318 336 3.8E-8 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 SUPERFAMILY SSF111352 37 414 3.79E-123 T 13-10-2018 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 ProSitePatterns PS01219 Ammonium transporters signature. 194 219 - T 13-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 TIGRFAM TIGR00836 amt: ammonium transporter 41 437 5.6E-136 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 SJPD1_1873 f72c67be8de7297a5cde20c9d715b8c9 441 Gene3D G3DSA:1.10.3430.10 15 441 4.8E-138 T 13-10-2018 IPR029020 Ammonium/urea transporter SJPD1_1475 a5baac2b66066eb51ee6b5ee0cc29ce2 181 SUPERFAMILY SSF56235 2 176 4.27E-53 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_1475 a5baac2b66066eb51ee6b5ee0cc29ce2 181 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 5 173 9.3E-77 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 SJPD1_1475 a5baac2b66066eb51ee6b5ee0cc29ce2 181 Pfam PF00227 Proteasome subunit 2 175 1.3E-23 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 SJPD1_1475 a5baac2b66066eb51ee6b5ee0cc29ce2 181 PIRSF PIRSF039093 1 179 3.0E-81 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 SJPD1_1475 a5baac2b66066eb51ee6b5ee0cc29ce2 181 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 4 176 38.928 T 13-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 SJPD1_1475 a5baac2b66066eb51ee6b5ee0cc29ce2 181 Gene3D G3DSA:3.60.20.10 5 178 1.6E-58 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_2739 94f419d23617cf4b17531ebe18919f0e 491 SUPERFAMILY SSF51556 54 481 1.99E-44 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_2739 94f419d23617cf4b17531ebe18919f0e 491 Pfam PF00962 Adenosine/AMP deaminase 291 467 2.1E-13 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 Gene3D G3DSA:1.10.238.10 201 288 5.2E-5 T 13-10-2018 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 ProSitePatterns PS00018 EF-hand calcium-binding domain. 75 87 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 SUPERFAMILY SSF47473 148 260 1.18E-6 T 13-10-2018 IPR011992 EF-hand domain pair SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 SMART SM00054 31 59 18.0 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 SMART SM00054 66 94 8.6E-4 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 SMART SM00054 236 264 12.0 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 SMART SM00054 145 173 24.0 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 SUPERFAMILY SSF47473 26 171 5.62E-16 T 13-10-2018 IPR011992 EF-hand domain pair SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 Pfam PF13202 EF hand 150 165 0.0018 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 Pfam PF13202 EF hand 241 256 8.2E-4 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_2642 fc49c69574958ed8f34bdabf3459afbe 315 Pfam PF13202 EF hand 69 90 4.7E-7 T 13-10-2018 IPR002048 EF-hand domain GO:0005509 SJPD1_0487 5a7b3ec79f60555edb517bf60bf4184c 367 SUPERFAMILY SSF58104 57 367 3.14E-54 T 13-10-2018 SJPD1_0487 5a7b3ec79f60555edb517bf60bf4184c 367 SMART SM00283 91 366 2.5E-32 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0487 5a7b3ec79f60555edb517bf60bf4184c 367 Gene3D G3DSA:1.10.287.950 37 367 1.2E-54 T 13-10-2018 SJPD1_0487 5a7b3ec79f60555edb517bf60bf4184c 367 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 169 287 1.7E-34 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2329 5d3bd1e068966a285b883cbcee3f2076 139 Pfam PF03061 Thioesterase superfamily 22 92 8.7E-19 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 SJPD1_2329 5d3bd1e068966a285b883cbcee3f2076 139 Gene3D G3DSA:3.10.129.10 1 131 3.5E-36 T 13-10-2018 SJPD1_2329 5d3bd1e068966a285b883cbcee3f2076 139 SUPERFAMILY SSF54637 5 124 2.16E-31 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 373 533 3.6E-36 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 Gene3D G3DSA:3.30.70.270 374 546 7.6E-47 T 13-10-2018 SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 Gene3D G3DSA:3.30.450.20 51 187 3.9E-16 T 13-10-2018 SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 Pfam PF02743 Cache domain 55 279 4.0E-18 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 SMART SM00267 365 544 3.4E-48 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 Gene3D G3DSA:1.20.1480.50 278 373 2.4E-5 T 13-10-2018 SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 SUPERFAMILY SSF55073 381 533 1.41E-38 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0748 ea1692592a4d6f2bf9b857e2033f55dc 550 Pfam PF00990 Diguanylate cyclase, GGDEF domain 376 533 1.6E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2169 52429203d2729b1875bd515a71a7c08c 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 213 6.3E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2169 52429203d2729b1875bd515a71a7c08c 225 SUPERFAMILY SSF161098 7 219 7.85E-43 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2169 52429203d2729b1875bd515a71a7c08c 225 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 220 2.1E-57 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 SJPD1_2169 52429203d2729b1875bd515a71a7c08c 225 Gene3D G3DSA:1.10.3720.10 2 224 7.3E-48 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_0520 b35eb3bd863d17ba9ff84bf549dc475e 214 SMART SM00382 27 211 3.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0520 b35eb3bd863d17ba9ff84bf549dc475e 214 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0520 b35eb3bd863d17ba9ff84bf549dc475e 214 SUPERFAMILY SSF52540 3 200 5.65E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0520 b35eb3bd863d17ba9ff84bf549dc475e 214 Gene3D G3DSA:3.40.50.300 3 212 3.5E-49 T 13-10-2018 SJPD1_0520 b35eb3bd863d17ba9ff84bf549dc475e 214 Pfam PF00005 ABC transporter 19 160 7.9E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1522 8c6effb9a154ee09efdfbdb90607982a 183 SUPERFAMILY SSF52540 2 183 2.26E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1522 8c6effb9a154ee09efdfbdb90607982a 183 PIRSF PIRSF006135 1 183 9.5E-59 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 SJPD1_1522 8c6effb9a154ee09efdfbdb90607982a 183 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 3 182 5.4E-57 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 SJPD1_1522 8c6effb9a154ee09efdfbdb90607982a 183 Gene3D G3DSA:3.40.50.300 2 183 4.9E-59 T 13-10-2018 SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 Pfam PF12800 4Fe-4S binding domain 64 77 0.021 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 Pfam PF13247 4Fe-4S dicluster domain 103 197 7.7E-29 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 Gene3D G3DSA:3.30.70.20 41 86 2.7E-9 T 13-10-2018 SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 Gene3D G3DSA:3.30.70.20 87 256 4.1E-62 T 13-10-2018 SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 142 153 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 9 28 5.9E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_2297 8cb1b41c2cab71b5e60c919513544736 267 SUPERFAMILY SSF54862 54 231 5.96E-73 T 13-10-2018 SJPD1_1863 6762d8d0b21ce41120352ba3216850e7 232 Pfam PF02146 Sir2 family 9 178 2.8E-45 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 SJPD1_1863 6762d8d0b21ce41120352ba3216850e7 232 SUPERFAMILY SSF52467 3 221 1.96E-58 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily SJPD1_1863 6762d8d0b21ce41120352ba3216850e7 232 Gene3D G3DSA:3.30.1600.10 18 151 1.9E-60 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily SJPD1_1863 6762d8d0b21ce41120352ba3216850e7 232 Gene3D G3DSA:3.40.50.1220 4 208 1.9E-60 T 13-10-2018 SJPD1_1148 4ec1c2e887eff9a1a504b1ff90590271 1392 Gene3D G3DSA:2.60.40.2030 150 264 1.5E-23 T 13-10-2018 IPR038081 CalX-like domain superfamily SJPD1_1148 4ec1c2e887eff9a1a504b1ff90590271 1392 Pfam PF03160 Calx-beta domain 174 242 1.1E-15 T 13-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 SJPD1_1148 4ec1c2e887eff9a1a504b1ff90590271 1392 SUPERFAMILY SSF141072 152 265 1.01E-27 T 13-10-2018 IPR038081 CalX-like domain superfamily SJPD1_1148 4ec1c2e887eff9a1a504b1ff90590271 1392 SMART SM00237 142 242 5.0E-4 T 13-10-2018 IPR003644 Na-Ca exchanger/integrin-beta4 GO:0007154|GO:0016021 SJPD1_0090 ceb8f585c84b09d0b41685196960734b 204 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 15 185 6.7E-27 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 SJPD1_0090 ceb8f585c84b09d0b41685196960734b 204 Gene3D G3DSA:3.90.850.10 9 203 4.6E-48 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 SJPD1_0090 ceb8f585c84b09d0b41685196960734b 204 SUPERFAMILY SSF56529 10 187 1.19E-44 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 2.3E-55 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 SUPERFAMILY SSF50193 1 122 3.4E-52 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 Gene3D G3DSA:2.40.150.20 1 122 1.3E-53 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 2.0E-57 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 13-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.541 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SJPD1_2428 a350376e07e25bbb8e65c3380a51dab0 122 SMART SM01374 1 122 3.4E-84 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 603 1.4E-230 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Gene3D G3DSA:3.60.20.10 2 235 2.7E-64 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Pfam PF01380 SIS domain 466 550 1.4E-10 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Pfam PF01380 SIS domain 290 413 3.1E-28 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 603 36.448 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 SUPERFAMILY SSF56235 2 225 9.44E-60 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Pfam PF13522 Glutamine amidotransferase domain 67 193 1.5E-17 T 13-10-2018 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 SUPERFAMILY SSF53697 245 603 4.64E-90 T 13-10-2018 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Gene3D G3DSA:3.40.50.10490 444 588 8.1E-121 T 13-10-2018 SJPD1_2131 2f8b83a65f02ac9266c2f074fe976d8a 603 Gene3D G3DSA:3.40.50.10490 248 602 8.1E-121 T 13-10-2018 SJPD1_2287 95d84069011a5135d2976a38f82b1eae 87 Gene3D G3DSA:1.10.260.40 10 82 2.9E-11 T 13-10-2018 SJPD1_2287 95d84069011a5135d2976a38f82b1eae 87 SUPERFAMILY SSF47413 13 82 5.63E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 SUPERFAMILY SSF52540 18 350 3.22E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 19 358 9.4E-126 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 207 221 - T 13-10-2018 IPR001482 Type II/IV secretion system protein SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 Gene3D G3DSA:3.30.450.90 8 113 6.6E-20 T 13-10-2018 SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 SMART SM00382 136 261 4.4E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 Pfam PF00437 Type II/IV secretion system protein 80 284 2.7E-44 T 13-10-2018 IPR001482 Type II/IV secretion system protein SJPD1_0247 71a2af3acaa1a3dae1c2eb1fb855ad2b 399 Gene3D G3DSA:3.40.50.300 114 373 3.3E-93 T 13-10-2018 SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 SMART SM00895 84 206 2.8E-20 T 13-10-2018 IPR011711 GntR, C-terminal SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 Pfam PF07729 FCD domain 84 204 5.3E-25 T 13-10-2018 IPR011711 GntR, C-terminal SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 Gene3D G3DSA:1.20.120.530 77 216 1.7E-27 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 Gene3D G3DSA:1.10.10.10 10 75 2.3E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 SUPERFAMILY SSF46785 10 104 8.44E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 SMART SM00345 16 74 4.2E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 SUPERFAMILY SSF48008 81 212 9.68E-28 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal SJPD1_0013 1bbccd5bb072577600ce62097f44902e 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 71 9.6E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 SJPD1_2174 78f17ac2c0f450b89ff202643653ba92 249 PIRSF PIRSF004846 1 249 1.9E-50 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 SJPD1_2174 78f17ac2c0f450b89ff202643653ba92 249 Gene3D G3DSA:3.40.190.10 99 207 5.1E-66 T 13-10-2018 SJPD1_2174 78f17ac2c0f450b89ff202643653ba92 249 SUPERFAMILY SSF53850 19 246 3.6E-54 T 13-10-2018 SJPD1_2174 78f17ac2c0f450b89ff202643653ba92 249 Pfam PF13531 Bacterial extracellular solute-binding protein 20 245 3.7E-42 T 13-10-2018 SJPD1_2174 78f17ac2c0f450b89ff202643653ba92 249 Gene3D G3DSA:3.40.190.10 24 245 5.1E-66 T 13-10-2018 SJPD1_2174 78f17ac2c0f450b89ff202643653ba92 249 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 25 244 3.0E-56 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 Gene3D G3DSA:3.30.420.40 150 312 1.4E-92 T 13-10-2018 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 Gene3D G3DSA:3.30.420.40 12 322 1.4E-92 T 13-10-2018 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 SUPERFAMILY SSF53067 10 142 2.91E-22 T 13-10-2018 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 Gene3D G3DSA:3.90.640.10 182 254 1.4E-92 T 13-10-2018 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 128 147 1.4E-23 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 295 321 1.4E-23 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 66 89 1.4E-23 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 46 64 1.4E-23 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 183 203 1.4E-23 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 Pfam PF06723 MreB/Mbl protein 9 328 8.2E-92 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 SJPD1_2774 c322d31b04b0aaff36193a22f97adab4 335 SUPERFAMILY SSF53067 150 323 7.62E-34 T 13-10-2018 SJPD1_2344 f0d5e09d1a2dab46b0fcc7d88985468a 232 Gene3D G3DSA:1.10.4010.10 1 232 1.3E-79 T 13-10-2018 SJPD1_2344 f0d5e09d1a2dab46b0fcc7d88985468a 232 Pfam PF08761 dUTPase 7 188 3.0E-35 T 13-10-2018 IPR014871 dUTPase/dCTP pyrophosphatase KEGG: 00240+3.6.1.12 SJPD1_2344 f0d5e09d1a2dab46b0fcc7d88985468a 232 SUPERFAMILY SSF101386 1 231 1.61E-68 T 13-10-2018 SJPD1_0554 6d75987b82656ccd1972bf34e0d7f2c6 225 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 169 186 - T 13-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 SJPD1_0554 6d75987b82656ccd1972bf34e0d7f2c6 225 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 3 224 35.718 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 SJPD1_0554 6d75987b82656ccd1972bf34e0d7f2c6 225 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 6 223 3.5E-81 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 SJPD1_0554 6d75987b82656ccd1972bf34e0d7f2c6 225 Gene3D G3DSA:3.40.1180.10 2 225 1.6E-84 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 SJPD1_0554 6d75987b82656ccd1972bf34e0d7f2c6 225 SUPERFAMILY SSF64005 6 217 7.85E-76 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 SJPD1_0554 6d75987b82656ccd1972bf34e0d7f2c6 225 Pfam PF01255 Putative undecaprenyl diphosphate synthase 10 223 2.9E-75 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 SJPD1_1110 ec9b453407ef6d87fa9a1da66a2d2210 301 SUPERFAMILY SSF103481 44 144 9.15E-13 T 13-10-2018 SJPD1_1110 ec9b453407ef6d87fa9a1da66a2d2210 301 SUPERFAMILY SSF103481 191 294 9.81E-17 T 13-10-2018 SJPD1_1110 ec9b453407ef6d87fa9a1da66a2d2210 301 Pfam PF00892 EamA-like transporter family 9 141 1.9E-22 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1110 ec9b453407ef6d87fa9a1da66a2d2210 301 Pfam PF00892 EamA-like transporter family 156 288 5.0E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2067 1e34a34425b76b831142fd3c924799f2 164 Pfam PF00460 Flagella basal body rod protein 9 34 2.6E-9 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 SJPD1_2067 1e34a34425b76b831142fd3c924799f2 164 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 113 160 7.9E-12 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_2067 1e34a34425b76b831142fd3c924799f2 164 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 163 7.5E-55 T 13-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 SJPD1_2067 1e34a34425b76b831142fd3c924799f2 164 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 13-10-2018 IPR019776 Flagellar basal body rod protein, conserved site SJPD1_2044 4ccd45a1bc376491d6097b37b832d579 162 Pfam PF13118 Protein of unknown function (DUF3972) 9 133 1.4E-45 T 13-10-2018 IPR025002 Domain of unknown function DUF3972 SJPD1_0690 f0bbb673f65ca73d86cd8d2857d4c5d9 180 Pfam PF08966 Domain of unknown function (DUF1882) 1 73 1.6E-35 T 13-10-2018 IPR015061 Domain of unknown function DUF1882 SJPD1_0690 f0bbb673f65ca73d86cd8d2857d4c5d9 180 SUPERFAMILY SSF56747 3 178 8.5E-90 T 13-10-2018 SJPD1_0690 f0bbb673f65ca73d86cd8d2857d4c5d9 180 Gene3D G3DSA:3.90.920.20 1 180 7.3E-81 T 13-10-2018 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 SUPERFAMILY SSF52833 3 105 8.21E-39 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 Gene3D G3DSA:3.40.30.10 2 106 1.1E-35 T 13-10-2018 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 103 1.6E-38 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 PRINTS PR00421 Thioredoxin family signature 21 29 4.2E-10 T 13-10-2018 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 PRINTS PR00421 Thioredoxin family signature 29 38 4.2E-10 T 13-10-2018 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 PRINTS PR00421 Thioredoxin family signature 69 80 4.2E-10 T 13-10-2018 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 PIRSF PIRSF000077 1 105 1.1E-39 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 SJPD1_0204 b92956effcd7b7061ee3569b5102474e 106 Pfam PF00085 Thioredoxin 5 102 1.1E-32 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 SJPD1_0796 2389f32c7ba0072db2cfab3e7fc2fddd 248 Gene3D G3DSA:3.40.1160.10 8 246 6.2E-74 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_0796 2389f32c7ba0072db2cfab3e7fc2fddd 248 PIRSF PIRSF005650 8 248 1.3E-87 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 SJPD1_0796 2389f32c7ba0072db2cfab3e7fc2fddd 248 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 14 239 6.1E-95 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 SJPD1_0796 2389f32c7ba0072db2cfab3e7fc2fddd 248 SUPERFAMILY SSF53633 12 239 2.09E-65 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily SJPD1_0796 2389f32c7ba0072db2cfab3e7fc2fddd 248 Hamap MF_01220_B Uridylate kinase [pyrH]. 11 246 41.689 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 SJPD1_0796 2389f32c7ba0072db2cfab3e7fc2fddd 248 Pfam PF00696 Amino acid kinase family 14 224 1.1E-33 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 SUPERFAMILY SSF52821 70 160 1.13E-18 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 Gene3D G3DSA:3.40.250.10 304 386 3.7E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 SUPERFAMILY SSF52821 166 265 1.57E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 Gene3D G3DSA:3.40.250.10 161 266 1.0E-17 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 Pfam PF00581 Rhodanese-like domain 73 156 1.5E-10 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 Pfam PF00581 Rhodanese-like domain 298 374 2.2E-9 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 Pfam PF00581 Rhodanese-like domain 171 258 3.9E-12 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 Gene3D G3DSA:3.40.250.10 42 160 3.0E-17 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 SMART SM00450 162 261 6.8E-14 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 SMART SM00450 60 160 9.0E-14 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 SMART SM00450 294 393 2.1E-8 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2868 40eac9d16a982e64b2a4b30f2f812cab 405 SUPERFAMILY SSF52821 292 373 1.57E-17 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1311 009fbd719dd43bd20be049224ebb8d27 372 SUPERFAMILY SSF53383 25 369 2.86E-88 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1311 009fbd719dd43bd20be049224ebb8d27 372 Gene3D G3DSA:3.40.640.10 2 372 3.4E-106 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1311 009fbd719dd43bd20be049224ebb8d27 372 Pfam PF00155 Aminotransferase class I and II 25 364 1.5E-45 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 SMART SM00387 332 432 6.4E-5 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 97 214 3.2E-18 T 13-10-2018 IPR000014 PAS domain SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 Gene3D G3DSA:3.30.565.10 294 434 8.9E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 Gene3D G3DSA:3.30.450.20 89 207 9.0E-28 T 13-10-2018 SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 Pfam PF07568 Histidine kinase 237 312 1.7E-25 T 13-10-2018 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 SUPERFAMILY SSF55874 306 426 1.44E-14 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 SUPERFAMILY SSF55785 105 209 3.84E-19 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 430 4.0E-6 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1022 335f94575ae2d740052b3148453dbd02 434 Pfam PF13426 PAS domain 122 209 8.0E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_2529 0c90ebba5693128f8a41aa2deaeb28c3 272 Gene3D G3DSA:1.25.40.10 27 102 1.2E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2529 0c90ebba5693128f8a41aa2deaeb28c3 272 SUPERFAMILY SSF48452 25 90 1.26E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2529 0c90ebba5693128f8a41aa2deaeb28c3 272 Pfam PF14559 Tetratricopeptide repeat 31 85 1.6E-6 T 13-10-2018 SJPD1_1736 2c64d314fd5421733647f3bfbbc6dde5 381 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 154 167 - T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1736 2c64d314fd5421733647f3bfbbc6dde5 381 PIRSF PIRSF000501 1 381 6.9E-143 T 13-10-2018 IPR016227 Dihydropteroate synthase, predicted KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 SJPD1_1736 2c64d314fd5421733647f3bfbbc6dde5 381 Gene3D G3DSA:3.20.20.20 100 380 4.7E-86 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1736 2c64d314fd5421733647f3bfbbc6dde5 381 Pfam PF00809 Pterin binding enzyme 122 361 7.9E-69 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1736 2c64d314fd5421733647f3bfbbc6dde5 381 SUPERFAMILY SSF51717 110 378 8.24E-86 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 SJPD1_1736 2c64d314fd5421733647f3bfbbc6dde5 381 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 120 375 8.2E-87 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 SJPD1_2579 9f887bb76391af5ffa98a40d8f033cc8 339 Pfam PF13531 Bacterial extracellular solute-binding protein 35 287 3.2E-43 T 13-10-2018 SJPD1_2579 9f887bb76391af5ffa98a40d8f033cc8 339 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 153 161 - T 13-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 SJPD1_2579 9f887bb76391af5ffa98a40d8f033cc8 339 Gene3D G3DSA:3.40.190.10 122 332 1.1E-133 T 13-10-2018 SJPD1_2579 9f887bb76391af5ffa98a40d8f033cc8 339 SUPERFAMILY SSF53850 28 334 3.73E-90 T 13-10-2018 SJPD1_2579 9f887bb76391af5ffa98a40d8f033cc8 339 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 23 333 2.7E-149 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 SJPD1_2579 9f887bb76391af5ffa98a40d8f033cc8 339 Gene3D G3DSA:3.40.190.10 34 302 1.1E-133 T 13-10-2018 SJPD1_2054 1f554db989cf57bd02a223ff92e2b869 184 Pfam PF02545 Maf-like protein 4 183 6.7E-28 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 SJPD1_2054 1f554db989cf57bd02a223ff92e2b869 184 SUPERFAMILY SSF52972 2 183 1.05E-38 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like SJPD1_2054 1f554db989cf57bd02a223ff92e2b869 184 PIRSF PIRSF006305 1 184 6.7E-38 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 SJPD1_2054 1f554db989cf57bd02a223ff92e2b869 184 Gene3D G3DSA:3.90.950.10 2 184 7.7E-37 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like SJPD1_2054 1f554db989cf57bd02a223ff92e2b869 184 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 8.4E-40 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 SJPD1_0646 d35fa12ae5e541e581d02bfc63edbffd 312 Gene3D G3DSA:1.10.1200.80 247 312 9.2E-12 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 SJPD1_0646 d35fa12ae5e541e581d02bfc63edbffd 312 Pfam PF01207 Dihydrouridine synthase (Dus) 14 300 1.9E-71 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 SJPD1_0646 d35fa12ae5e541e581d02bfc63edbffd 312 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 13-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 SJPD1_0646 d35fa12ae5e541e581d02bfc63edbffd 312 PIRSF PIRSF006621 1 312 5.0E-82 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 SJPD1_0646 d35fa12ae5e541e581d02bfc63edbffd 312 SUPERFAMILY SSF51395 12 311 6.96E-71 T 13-10-2018 SJPD1_0646 d35fa12ae5e541e581d02bfc63edbffd 312 Gene3D G3DSA:3.20.20.70 9 246 1.7E-70 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1858 8125d8be1afa70c41b2aff6dfa5b6978 145 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 97 1.2E-22 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain SJPD1_1858 8125d8be1afa70c41b2aff6dfa5b6978 145 SUPERFAMILY SSF53927 2 142 1.92E-40 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 SJPD1_1858 8125d8be1afa70c41b2aff6dfa5b6978 145 Gene3D G3DSA:3.40.140.10 1 145 2.1E-45 T 13-10-2018 SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 SMART SM00382 30 209 5.9E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 SMART SM00382 349 539 4.6E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 SUPERFAMILY SSF52540 3 218 7.0E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 Pfam PF00005 ABC transporter 22 161 3.0E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 Pfam PF00005 ABC transporter 341 484 1.8E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 Gene3D G3DSA:3.40.50.300 314 559 9.7E-61 T 13-10-2018 SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 SUPERFAMILY SSF52540 315 543 9.57E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2725 e8fc9b44a246ef6fd37552938c5b41eb 570 Gene3D G3DSA:3.40.50.300 1 237 2.6E-58 T 13-10-2018 SJPD1_0669 63260fd976b39db2f21e87fcb6896c7f 138 Gene3D G3DSA:3.40.1550.10 1 133 5.8E-9 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0669 63260fd976b39db2f21e87fcb6896c7f 138 Pfam PF13690 Chemotaxis phosphatase CheX 47 110 4.3E-7 T 13-10-2018 IPR028051 Chemotaxis phosphatase CheX-like domain SJPD1_0669 63260fd976b39db2f21e87fcb6896c7f 138 SUPERFAMILY SSF103039 18 110 2.75E-8 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_1117 3b79e1b12988c31771b4b6f36b506247 212 Gene3D G3DSA:3.40.50.450 14 145 1.3E-6 T 13-10-2018 SJPD1_1420 54424fd2b85800b9da5e34335a61108e 745 Gene3D G3DSA:3.40.718.10 122 343 5.2E-6 T 13-10-2018 SJPD1_1420 54424fd2b85800b9da5e34335a61108e 745 Gene3D G3DSA:3.40.718.10 408 651 2.3E-5 T 13-10-2018 SJPD1_1420 54424fd2b85800b9da5e34335a61108e 745 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 741 0.0 T 13-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 SJPD1_1420 54424fd2b85800b9da5e34335a61108e 745 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 2 744 0.0 T 13-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 SJPD1_1420 54424fd2b85800b9da5e34335a61108e 745 PIRSF PIRSF009407 1 744 0.0 T 13-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 SJPD1_1420 54424fd2b85800b9da5e34335a61108e 745 SUPERFAMILY SSF53659 5 743 0.0 T 13-10-2018 SJPD1_0341 1503ce16cc39192de30d810ae747f38b 342 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 281 293 - T 13-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site SJPD1_0341 1503ce16cc39192de30d810ae747f38b 342 SUPERFAMILY SSF53092 3 102 3.92E-5 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal SJPD1_0341 1503ce16cc39192de30d810ae747f38b 342 Pfam PF00557 Metallopeptidase family M24 122 332 1.4E-59 T 13-10-2018 IPR000994 Peptidase M24 SJPD1_0341 1503ce16cc39192de30d810ae747f38b 342 Gene3D G3DSA:3.40.350.10 2 110 5.9E-12 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal SJPD1_0341 1503ce16cc39192de30d810ae747f38b 342 SUPERFAMILY SSF55920 70 341 3.53E-64 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like SJPD1_0341 1503ce16cc39192de30d810ae747f38b 342 Gene3D G3DSA:3.90.230.10 111 342 1.4E-68 T 13-10-2018 SJPD1_0499 1c4a6f10a141d6ccee8eafaad5e10d11 392 SUPERFAMILY SSF103473 6 385 1.57E-50 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_0499 1c4a6f10a141d6ccee8eafaad5e10d11 392 Gene3D G3DSA:1.20.1250.20 14 385 1.0E-40 T 13-10-2018 SJPD1_0499 1c4a6f10a141d6ccee8eafaad5e10d11 392 Pfam PF07690 Major Facilitator Superfamily 19 348 6.1E-36 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_1692 eba1ab206fa9c5014df088b4dd1c4b86 137 Pfam PF02082 Transcriptional regulator 4 83 4.7E-22 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type SJPD1_1692 eba1ab206fa9c5014df088b4dd1c4b86 137 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 96 1.4E-25 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type SJPD1_1692 eba1ab206fa9c5014df088b4dd1c4b86 137 Gene3D G3DSA:1.10.10.10 1 135 1.1E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1692 eba1ab206fa9c5014df088b4dd1c4b86 137 SUPERFAMILY SSF46785 4 96 7.12E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1692 eba1ab206fa9c5014df088b4dd1c4b86 137 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 50 68 - T 13-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site SJPD1_2717 2013c82244161dc743a6dd48116f2af2 285 Pfam PF03824 High-affinity nickel-transport protein 16 276 3.2E-43 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 SJPD1_2717 2013c82244161dc743a6dd48116f2af2 285 SUPERFAMILY SSF103473 4 251 1.96E-5 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1010 9c6f662065f7e651b8265edc511cddb1 533 Gene3D G3DSA:3.30.450.290 37 171 6.9E-12 T 13-10-2018 SJPD1_1010 9c6f662065f7e651b8265edc511cddb1 533 Gene3D G3DSA:1.10.287.950 198 530 1.9E-49 T 13-10-2018 SJPD1_1010 9c6f662065f7e651b8265edc511cddb1 533 SMART SM00283 267 528 4.4E-25 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1010 9c6f662065f7e651b8265edc511cddb1 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 338 484 1.4E-30 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1010 9c6f662065f7e651b8265edc511cddb1 533 Pfam PF11845 Protein of unknown function (DUF3365) 21 148 7.7E-8 T 13-10-2018 IPR021796 Protein of unknown function DUF3365 SJPD1_1010 9c6f662065f7e651b8265edc511cddb1 533 SUPERFAMILY SSF58104 220 529 2.35E-48 T 13-10-2018 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Gene3D G3DSA:3.30.870.10 315 499 1.1E-70 T 13-10-2018 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Pfam PF13089 Polyphosphate kinase N-terminal domain 10 114 2.5E-32 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Gene3D G3DSA:3.30.870.10 500 683 2.7E-63 T 13-10-2018 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 SUPERFAMILY SSF56024 501 681 2.92E-64 T 13-10-2018 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 SUPERFAMILY SSF140356 7 111 4.97E-33 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Pfam PF13090 Polyphosphate kinase C-terminal domain 329 671 2.2E-145 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 SUPERFAMILY SSF143724 113 304 3.14E-53 T 13-10-2018 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 SUPERFAMILY SSF56024 313 494 1.06E-52 T 13-10-2018 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Hamap MF_00347 Polyphosphate kinase [ppk]. 7 678 27.168 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Pfam PF02503 Polyphosphate kinase middle domain 128 319 1.5E-57 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 Gene3D G3DSA:3.30.1840.10 3 308 1.4E-90 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 10 672 5.2E-242 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 SJPD1_1989 673114f8396c5e4cd1650452399f51a2 703 PIRSF PIRSF015589 1 692 2.0E-266 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 SJPD1_2032 30dcfcbf0dc1f8672f1402f9e2283d77 286 SUPERFAMILY SSF111321 1 284 1.16E-73 T 13-10-2018 IPR036075 AF1104-like superfamily SJPD1_2032 30dcfcbf0dc1f8672f1402f9e2283d77 286 Gene3D G3DSA:1.10.285.20 68 132 3.2E-10 T 13-10-2018 SJPD1_2032 30dcfcbf0dc1f8672f1402f9e2283d77 286 PIRSF PIRSF006593 1 285 3.1E-77 T 13-10-2018 IPR014444 Uncharacterised conserved protein UCP006593 SJPD1_2032 30dcfcbf0dc1f8672f1402f9e2283d77 286 Pfam PF01937 Protein of unknown function DUF89 6 275 1.3E-44 T 13-10-2018 IPR002791 Domain of unknown function DUF89 SJPD1_2032 30dcfcbf0dc1f8672f1402f9e2283d77 286 Gene3D G3DSA:3.40.50.10880 135 285 3.2E-50 T 13-10-2018 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 Pfam PF01259 SAICAR synthetase 7 233 2.2E-61 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 Gene3D G3DSA:3.30.200.20 7 233 5.7E-93 T 13-10-2018 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 13-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 SUPERFAMILY SSF56104 3 235 7.19E-77 T 13-10-2018 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 5 236 1.8E-72 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 236 31.017 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_1768 1452e77607a7a2650d123d21db3b84e1 237 Gene3D G3DSA:3.30.470.20 85 222 5.7E-93 T 13-10-2018 SJPD1_1221 d8560f5bc93e424d1e963425a6901631 391 SUPERFAMILY SSF103473 5 381 2.88E-47 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_1221 d8560f5bc93e424d1e963425a6901631 391 Gene3D G3DSA:1.20.1250.20 207 385 5.5E-17 T 13-10-2018 SJPD1_1221 d8560f5bc93e424d1e963425a6901631 391 Gene3D G3DSA:1.20.1250.20 4 193 1.1E-19 T 13-10-2018 SJPD1_1221 d8560f5bc93e424d1e963425a6901631 391 Pfam PF07690 Major Facilitator Superfamily 214 381 2.4E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_1221 d8560f5bc93e424d1e963425a6901631 391 Pfam PF07690 Major Facilitator Superfamily 14 208 1.1E-16 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 5 78 15.556 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 4 76 1.2E-26 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 SMART SM00739 6 33 5.4E-7 T 13-10-2018 IPR005824 KOW SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 Gene3D G3DSA:2.30.30.1090 1 72 8.9E-28 T 13-10-2018 SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 SUPERFAMILY SSF50104 4 75 1.28E-24 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 42 76 4.1E-9 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 Pfam PF00467 KOW motif 9 40 1.2E-8 T 13-10-2018 IPR005824 KOW SJPD1_2427 21fc89dfa11d38ffbf8f25e80cc8f91e 78 ProSitePatterns PS01108 Ribosomal protein L24 signature. 10 27 - T 13-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1743 7667409ec077abcd039f8fb54c43664f 124 SMART SM00422 10 79 1.1E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 SJPD1_1743 7667409ec077abcd039f8fb54c43664f 124 Gene3D G3DSA:1.10.1660.10 9 102 4.3E-23 T 13-10-2018 SJPD1_1743 7667409ec077abcd039f8fb54c43664f 124 Pfam PF13411 MerR HTH family regulatory protein 10 77 4.9E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 SJPD1_1743 7667409ec077abcd039f8fb54c43664f 124 SUPERFAMILY SSF46955 10 106 2.66E-18 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 Hamap MF_01393 ATP synthase subunit a [atpB]. 11 222 14.727 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 Gene3D G3DSA:1.20.120.220 70 225 9.7E-40 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 SUPERFAMILY SSF81336 72 215 3.4E-35 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 Pfam PF00119 ATP synthase A chain 23 215 7.3E-52 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 PRINTS PR00123 ATP synthase A subunit signature 202 217 9.4E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 PRINTS PR00123 ATP synthase A subunit signature 138 153 9.4E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 PRINTS PR00123 ATP synthase A subunit signature 158 180 9.4E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 PRINTS PR00123 ATP synthase A subunit signature 78 94 9.4E-13 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 19 217 7.2E-39 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_1378 00550225263d800aec6bddd9d8ad6837 225 ProSitePatterns PS00449 ATP synthase a subunit signature. 161 170 - T 13-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0595 7c247a03d775ba3ba3ec9a45a148f113 67 Gene3D G3DSA:1.10.287.1040 1 67 6.1E-9 T 13-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 SJPD1_0595 7c247a03d775ba3ba3ec9a45a148f113 67 SUPERFAMILY SSF116842 2 63 6.93E-12 T 13-10-2018 SJPD1_0595 7c247a03d775ba3ba3ec9a45a148f113 67 Pfam PF02609 Exonuclease VII small subunit 8 56 2.5E-12 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 SJPD1_0595 7c247a03d775ba3ba3ec9a45a148f113 67 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 7 62 1.6E-14 T 13-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 SJPD1_0276 30db07c46a3ef5125566b5315eb2420c 83 Gene3D G3DSA:3.30.70.20 2 83 9.3E-31 T 13-10-2018 SJPD1_0276 30db07c46a3ef5125566b5315eb2420c 83 Pfam PF00037 4Fe-4S binding domain 6 25 7.8E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0276 30db07c46a3ef5125566b5315eb2420c 83 SUPERFAMILY SSF54862 5 76 9.77E-19 T 13-10-2018 SJPD1_0276 30db07c46a3ef5125566b5315eb2420c 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2163 b959684755749342e6217f1f5a5c6b7a 295 Pfam PF00072 Response regulator receiver domain 3 105 1.4E-7 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2163 b959684755749342e6217f1f5a5c6b7a 295 Gene3D G3DSA:3.40.50.2300 1 117 1.1E-16 T 13-10-2018 SJPD1_2163 b959684755749342e6217f1f5a5c6b7a 295 PIRSF PIRSF016788 1 295 1.6E-96 T 13-10-2018 IPR014483 Fis-like DNA-binding domain-containing signal transduction response regulator, predicted SJPD1_2163 b959684755749342e6217f1f5a5c6b7a 295 Gene3D G3DSA:1.10.10.60 262 295 2.9E-5 T 13-10-2018 SJPD1_2163 b959684755749342e6217f1f5a5c6b7a 295 SUPERFAMILY SSF52172 1 128 1.24E-18 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2163 b959684755749342e6217f1f5a5c6b7a 295 SMART SM00448 1 105 1.4E-7 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0389 c8004c53c07f7797f89f9a09b242e1d5 234 SUPERFAMILY SSF47413 3 63 1.61E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0389 c8004c53c07f7797f89f9a09b242e1d5 234 Gene3D G3DSA:1.10.260.40 2 73 8.2E-12 T 13-10-2018 SJPD1_0389 c8004c53c07f7797f89f9a09b242e1d5 234 Pfam PF01381 Helix-turn-helix 4 56 3.1E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0389 c8004c53c07f7797f89f9a09b242e1d5 234 SMART SM00530 2 57 2.3E-7 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_1328 ca23965eb39b2b1f78c84335885cd8e4 199 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 40 197 7.9E-44 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1328 ca23965eb39b2b1f78c84335885cd8e4 199 SUPERFAMILY SSF55073 49 199 6.67E-45 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1328 ca23965eb39b2b1f78c84335885cd8e4 199 SMART SM00267 33 199 4.4E-55 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1328 ca23965eb39b2b1f78c84335885cd8e4 199 Gene3D G3DSA:3.30.70.270 31 199 1.5E-48 T 13-10-2018 SJPD1_1328 ca23965eb39b2b1f78c84335885cd8e4 199 Pfam PF00990 Diguanylate cyclase, GGDEF domain 45 195 6.5E-43 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0458 765590d5b76fe0df8dc0ba954e26e866 483 SMART SM00283 151 394 1.1E-25 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0458 765590d5b76fe0df8dc0ba954e26e866 483 Gene3D G3DSA:1.10.287.950 100 386 1.1E-48 T 13-10-2018 SJPD1_0458 765590d5b76fe0df8dc0ba954e26e866 483 Pfam PF13682 Chemoreceptor zinc-binding domain 373 436 6.8E-11 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain SJPD1_0458 765590d5b76fe0df8dc0ba954e26e866 483 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 231 363 5.1E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0458 765590d5b76fe0df8dc0ba954e26e866 483 SUPERFAMILY SSF58104 90 375 4.45E-47 T 13-10-2018 SJPD1_0529 cf70605afaa9194dfb0f2d4189f6f9b7 635 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 141 1.8E-7 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain SJPD1_0529 cf70605afaa9194dfb0f2d4189f6f9b7 635 Gene3D G3DSA:2.40.170.20 191 635 1.9E-15 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_0529 cf70605afaa9194dfb0f2d4189f6f9b7 635 SUPERFAMILY SSF56935 35 635 2.89E-36 T 13-10-2018 SJPD1_0529 cf70605afaa9194dfb0f2d4189f6f9b7 635 Pfam PF00593 TonB dependent receptor 220 633 2.8E-7 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_0529 cf70605afaa9194dfb0f2d4189f6f9b7 635 Gene3D G3DSA:2.170.130.10 36 154 1.1E-8 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily SJPD1_1182 2771ecf3813e6a35d4d6f8de9d6e2fe8 309 Pfam PF01758 Sodium Bile acid symporter family 35 214 3.7E-38 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 SJPD1_1182 2771ecf3813e6a35d4d6f8de9d6e2fe8 309 Gene3D G3DSA:1.20.1530.20 1 306 5.1E-100 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_1171 55c9ef5c704c2193ef5c38a8e0d53e65 66 Pfam PF02597 ThiS family 8 65 1.2E-13 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 SJPD1_1171 55c9ef5c704c2193ef5c38a8e0d53e65 66 Gene3D G3DSA:3.10.20.30 1 66 3.7E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_1171 55c9ef5c704c2193ef5c38a8e0d53e65 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 4 65 9.1E-19 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis SJPD1_1171 55c9ef5c704c2193ef5c38a8e0d53e65 66 SUPERFAMILY SSF54285 2 64 4.09E-15 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp SJPD1_1849 d49963527256eb5cd144f2600b2fba4e 432 Pfam PF00501 AMP-binding enzyme 97 289 8.7E-12 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_1849 d49963527256eb5cd144f2600b2fba4e 432 Gene3D G3DSA:3.40.50.12780 7 331 2.2E-74 T 13-10-2018 SJPD1_1849 d49963527256eb5cd144f2600b2fba4e 432 SUPERFAMILY SSF56801 68 394 5.23E-32 T 13-10-2018 SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 Gene3D G3DSA:1.10.760.10 163 261 1.3E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 PIRSF PIRSF019225 45 163 2.8E-36 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 PIRSF PIRSF019225 159 289 1.2E-60 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 PIRSF PIRSF019225 1 48 1.7E-18 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 SUPERFAMILY SSF46626 30 157 1.63E-18 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 SUPERFAMILY SSF46626 165 271 8.37E-22 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 Gene3D G3DSA:1.10.760.10 1 161 6.8E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 Pfam PF00034 Cytochrome c 165 250 1.1E-4 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1006 44d8023685019bbbff93aa7405aec0bf 289 Pfam PF00034 Cytochrome c 52 156 1.4E-10 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 Pfam PF02743 Cache domain 38 249 4.1E-31 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 Gene3D G3DSA:3.30.450.20 62 172 1.0E-43 T 13-10-2018 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 Gene3D G3DSA:3.30.450.20 50 262 1.0E-43 T 13-10-2018 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 SMART SM00304 290 344 1.4E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 SMART SM00283 345 620 4.7E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 435 533 6.5E-31 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 Gene3D G3DSA:1.10.287.950 289 621 1.6E-59 T 13-10-2018 SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 SUPERFAMILY SSF103190 94 183 3.14E-10 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_2402 eab61fbeba9a37ebbc8bce758015c241 621 SUPERFAMILY SSF58104 312 620 4.32E-57 T 13-10-2018 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 440 2.2E-26 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 Gene3D G3DSA:1.10.275.10 1 92 3.5E-34 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 SUPERFAMILY SSF48557 3 441 2.83E-127 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 3.0E-23 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 3.0E-23 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 3.0E-23 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 3.0E-23 T 13-10-2018 IPR000362 Fumarate lyase family SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 3.7E-7 T 13-10-2018 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 3.7E-7 T 13-10-2018 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 3.7E-7 T 13-10-2018 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 3.7E-7 T 13-10-2018 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 Pfam PF00206 Lyase 7 284 4.5E-54 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 SMART SM00998 349 441 1.4E-34 T 13-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 13-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 441 9.5E-171 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 Gene3D G3DSA:1.10.40.30 349 440 1.0E-24 T 13-10-2018 SJPD1_0088 4cb9a33c82159d47220dd77249d2f3d3 442 Gene3D G3DSA:1.20.200.10 93 348 3.0E-90 T 13-10-2018 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 Gene3D G3DSA:1.10.300.10 97 195 5.0E-94 T 13-10-2018 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 Gene3D G3DSA:3.90.170.10 261 415 3.6E-67 T 13-10-2018 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 SMART SM00788 3 414 3.9E-254 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 Pfam PF00709 Adenylosuccinate synthetase 5 413 5.5E-169 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 415 2.8E-163 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 SUPERFAMILY SSF52540 1 414 2.39E-157 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 Gene3D G3DSA:3.40.440.10 6 257 5.0E-94 T 13-10-2018 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 415 181.387 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 13-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 SJPD1_2399 2dda6a1bde44eb27fba9fa44dca50e44 415 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 128 139 - T 13-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 SJPD1_2731 4750160f83325514a0fd59ba5d148f07 244 Pfam PF01925 Sulfite exporter TauE/SafE 7 237 1.1E-27 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 Pfam PF01687 Riboflavin kinase 156 276 9.3E-26 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 Gene3D G3DSA:2.40.30.30 158 285 5.5E-27 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 Pfam PF06574 FAD synthetase 72 138 2.5E-6 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 Pfam PF06574 FAD synthetase 14 37 9.3E-6 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 SUPERFAMILY SSF52374 16 158 1.96E-16 T 13-10-2018 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 SUPERFAMILY SSF82114 145 279 3.27E-31 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 SMART SM00904 155 277 1.9E-36 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 15 276 7.3E-58 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 Gene3D G3DSA:3.40.50.620 58 157 8.2E-21 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 Gene3D G3DSA:3.40.50.620 2 45 1.3E-5 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 PIRSF PIRSF004491 56 280 3.1E-54 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 SJPD1_1731 a4c43b8b680d787e2ad85f84ae7d7ff0 287 PIRSF PIRSF004491 2 41 4.2E-7 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 SJPD1_0473 97bffa9bfaa44269159effd593f48895 171 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 28 156 6.7E-18 T 13-10-2018 SJPD1_0473 97bffa9bfaa44269159effd593f48895 171 Gene3D G3DSA:3.40.190.10 28 105 1.7E-10 T 13-10-2018 SJPD1_0473 97bffa9bfaa44269159effd593f48895 171 SUPERFAMILY SSF53850 32 154 2.11E-9 T 13-10-2018 SJPD1_0473 97bffa9bfaa44269159effd593f48895 171 Gene3D G3DSA:3.40.190.10 106 157 1.7E-10 T 13-10-2018 SJPD1_2660 a27221b7874310bf555e645e58e6225d 344 Pfam PF01497 Periplasmic binding protein 51 276 1.1E-22 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_2660 a27221b7874310bf555e645e58e6225d 344 SUPERFAMILY SSF53807 37 342 1.14E-58 T 13-10-2018 SJPD1_2660 a27221b7874310bf555e645e58e6225d 344 Gene3D G3DSA:3.40.50.1980 17 339 4.8E-71 T 13-10-2018 SJPD1_1993 ecd7d0e27621b6b3f2c9ad9d4d503466 213 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 30 44 - T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 SJPD1_1993 ecd7d0e27621b6b3f2c9ad9d4d503466 213 SUPERFAMILY SSF51366 1 212 2.35E-64 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 SJPD1_1993 ecd7d0e27621b6b3f2c9ad9d4d503466 213 PIRSF PIRSF001461 1 213 1.4E-89 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 SJPD1_1993 ecd7d0e27621b6b3f2c9ad9d4d503466 213 Gene3D G3DSA:3.20.20.70 1 213 5.2E-78 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1993 ecd7d0e27621b6b3f2c9ad9d4d503466 213 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 2 212 2.1E-88 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 SJPD1_1993 ecd7d0e27621b6b3f2c9ad9d4d503466 213 Pfam PF00834 Ribulose-phosphate 3 epimerase family 3 199 1.1E-80 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 SJPD1_2246 e8fafbd1962f5ea166df2328e3625de8 359 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 80 299 1.2E-20 T 13-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 SJPD1_2246 e8fafbd1962f5ea166df2328e3625de8 359 Gene3D G3DSA:3.40.50.2000 1 161 3.7E-20 T 13-10-2018 SJPD1_2246 e8fafbd1962f5ea166df2328e3625de8 359 SUPERFAMILY SSF53756 5 359 2.98E-60 T 13-10-2018 SJPD1_2246 e8fafbd1962f5ea166df2328e3625de8 359 Gene3D G3DSA:3.40.50.2000 167 359 1.2E-26 T 13-10-2018 SJPD1_2143 00905906466deb4270f174cf29790c78 216 Pfam PF12838 4Fe-4S dicluster domain 85 153 4.1E-9 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2143 00905906466deb4270f174cf29790c78 216 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 85 96 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2143 00905906466deb4270f174cf29790c78 216 Gene3D G3DSA:3.30.70.20 36 165 3.0E-22 T 13-10-2018 SJPD1_2143 00905906466deb4270f174cf29790c78 216 SUPERFAMILY SSF54862 4 158 8.97E-33 T 13-10-2018 SJPD1_0075 6458cf4422ad5a1984225abb354dd046 212 Pfam PF01914 MarC family integral membrane protein 6 205 3.3E-45 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 SJPD1_0075 6458cf4422ad5a1984225abb354dd046 212 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 204 4.5E-44 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 Gene3D G3DSA:3.40.50.10490 2 192 9.2E-58 T 13-10-2018 SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 SMART SM00116 206 254 4.3E-5 T 13-10-2018 IPR000644 CBS domain SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 Pfam PF01380 SIS domain 42 168 6.5E-23 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 Gene3D G3DSA:3.10.580.10 193 318 2.0E-31 T 13-10-2018 SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 SUPERFAMILY SSF53697 5 275 1.96E-58 T 13-10-2018 SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 Pfam PF00571 CBS domain 198 254 7.8E-8 T 13-10-2018 IPR000644 CBS domain SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 42 311 4.7E-106 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 SJPD1_0097 c184067daba9beba32665b7453cc35ce 321 PIRSF PIRSF004692 1 321 6.9E-123 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 SJPD1_0501 771502129535b562fc77c6624594a225 218 SUPERFAMILY SSF51206 4 137 3.4E-25 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_0501 771502129535b562fc77c6624594a225 218 SUPERFAMILY SSF46785 141 215 7.98E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0501 771502129535b562fc77c6624594a225 218 Pfam PF00027 Cyclic nucleotide-binding domain 22 108 4.1E-12 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_0501 771502129535b562fc77c6624594a225 218 SMART SM00419 158 207 6.6E-4 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0501 771502129535b562fc77c6624594a225 218 Pfam PF13545 Crp-like helix-turn-helix domain 144 213 9.4E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0501 771502129535b562fc77c6624594a225 218 SMART SM00100 3 125 1.7E-4 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_0501 771502129535b562fc77c6624594a225 218 Gene3D G3DSA:2.60.120.1460 7 215 4.6E-44 T 13-10-2018 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 SMART SM00388 216 282 7.7E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 410 9.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 378 9.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 9.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 390 9.2E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 Gene3D G3DSA:1.10.287.130 167 282 1.6E-15 T 13-10-2018 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 SMART SM00387 327 433 1.4E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 Gene3D G3DSA:3.30.565.10 289 435 4.1E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 SUPERFAMILY SSF55874 290 431 3.8E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 330 432 4.0E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 SUPERFAMILY SSF47384 199 280 2.94E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0277 0fe124f29381e3f2d36f5161a2bef08f 436 Pfam PF00512 His Kinase A (phospho-acceptor) domain 217 281 3.0E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1962 974eb60cfb059e309ad5a9f641295595 139 Pfam PF01618 MotA/TolQ/ExbB proton channel family 44 133 3.3E-28 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel SJPD1_1962 974eb60cfb059e309ad5a9f641295595 139 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 7 137 1.9E-40 T 13-10-2018 IPR014172 TonB-system energizer ExbB type-2 GO:0016020|GO:0055085 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 Gene3D G3DSA:3.30.565.10 396 544 4.7E-24 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 503 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 542 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 523 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 489 1.3E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 Gene3D G3DSA:3.30.450.20 196 316 3.0E-18 T 13-10-2018 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 SUPERFAMILY SSF55874 392 543 1.92E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 SUPERFAMILY SSF55785 188 300 2.79E-11 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 SMART SM00091 199 265 1.3E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 Gene3D G3DSA:1.10.287.130 319 393 5.3E-10 T 13-10-2018 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 202 315 5.8E-14 T 13-10-2018 IPR000014 PAS domain SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 435 543 7.2E-11 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 SUPERFAMILY SSF47384 324 391 7.06E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 SMART SM00387 434 545 9.9E-8 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1001 c77daac269ba3112009bdaffc94e898c 548 Pfam PF13426 PAS domain 210 313 4.3E-9 T 13-10-2018 IPR000014 PAS domain SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 SMART SM00671 89 124 4.5E-10 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 SMART SM00671 161 196 4.8E-12 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 SMART SM00671 51 88 1.2E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 SMART SM00671 125 160 1.2E-8 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 Gene3D G3DSA:1.25.40.10 21 210 3.1E-58 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 SUPERFAMILY SSF81901 26 204 1.31E-47 T 13-10-2018 SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 Pfam PF08238 Sel1 repeat 89 124 3.1E-7 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 Pfam PF08238 Sel1 repeat 127 160 9.4E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 Pfam PF08238 Sel1 repeat 24 50 81.0 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 Pfam PF08238 Sel1 repeat 163 195 6.4E-9 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0017 ddc88b3c40ae6e470963a11904bcf501 211 Pfam PF08238 Sel1 repeat 51 87 1.8E-6 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 Hamap MF_00050 Elongation factor Ts [tsf]. 1 354 60.693 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 Gene3D G3DSA:3.30.479.20 57 149 1.4E-18 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 Pfam PF00889 Elongation factor TS 73 337 7.6E-66 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 355 8.5E-101 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 SUPERFAMILY SSF54713 150 337 3.49E-28 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 SUPERFAMILY SSF54713 56 146 1.1E-16 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 SUPERFAMILY SSF46934 4 55 6.46E-18 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 13-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 SJPD1_0519 9b2cb94d74888452f8c85aba8e84dc9b 355 Gene3D G3DSA:1.10.8.10 1 56 2.9E-26 T 13-10-2018 SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 SUPERFAMILY SSF117892 93 250 4.97E-13 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 Pfam PF01145 SPFH domain / Band 7 family 65 265 4.7E-26 T 13-10-2018 IPR001107 Band 7 domain SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 PRINTS PR00679 Prohibitin signature 166 184 4.4E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 PRINTS PR00679 Prohibitin signature 263 279 4.4E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 PRINTS PR00679 Prohibitin signature 143 162 4.4E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 PRINTS PR00679 Prohibitin signature 189 205 4.4E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 PRINTS PR00679 Prohibitin signature 240 263 4.4E-14 T 13-10-2018 IPR000163 Prohibitin GO:0016020 Reactome: R-HSA-8949664 SJPD1_0212 bf784717ed5eb03b0c5a668e1c20589f 362 SMART SM00244 61 245 1.3E-23 T 13-10-2018 IPR001107 Band 7 domain SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 2 457 4.9E-193 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 SUPERFAMILY SSF102114 4 443 2.09E-130 T 13-10-2018 SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 Gene3D G3DSA:3.80.30.20 1 360 2.2E-115 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 SMART SM00729 47 269 2.6E-56 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 PIRSF PIRSF000167 1 453 6.3E-165 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 Pfam PF04055 Radical SAM superfamily 53 225 5.7E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0496 4ea9085969fbd616f4afb4342ae1431d 457 Gene3D G3DSA:1.10.10.920 361 457 2.0E-25 T 13-10-2018 SJPD1_1105 4ae634695d860bf9d8f6fe12bb1ce093 208 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 10 203 6.7E-58 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1105 4ae634695d860bf9d8f6fe12bb1ce093 208 Gene3D G3DSA:3.20.20.70 2 208 6.2E-56 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_1105 4ae634695d860bf9d8f6fe12bb1ce093 208 SUPERFAMILY SSF51391 6 205 7.06E-55 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1105 4ae634695d860bf9d8f6fe12bb1ce093 208 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 7 205 23.721 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1105 4ae634695d860bf9d8f6fe12bb1ce093 208 Pfam PF02581 Thiamine monophosphate synthase 10 191 3.9E-57 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_0822 250e0203063980a107798fc54c8ee099 192 SUPERFAMILY SSF52317 1 185 3.19E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0822 250e0203063980a107798fc54c8ee099 192 Pfam PF01965 DJ-1/PfpI family 4 168 6.6E-27 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 SJPD1_0822 250e0203063980a107798fc54c8ee099 192 Gene3D G3DSA:3.40.50.880 1 190 5.0E-60 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 Gene3D G3DSA:1.10.455.10 1 156 7.6E-59 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.406 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 2 156 3.1E-67 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 SUPERFAMILY SSF47973 2 152 1.57E-56 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 Pfam PF00177 Ribosomal protein S7p/S5e 2 149 3.8E-62 T 13-10-2018 IPR023798 Ribosomal protein S7 domain SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 PIRSF PIRSF002122 3 156 9.9E-58 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 SJPD1_0443 d89a9587b41ed2e0aa92601f930ce582 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 19 45 - T 13-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2794 e713af18428667e23bdd348b8ced1501 236 Gene3D G3DSA:3.90.550.10 2 226 3.5E-70 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2794 e713af18428667e23bdd348b8ced1501 236 SUPERFAMILY SSF53448 3 228 3.75E-62 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2794 e713af18428667e23bdd348b8ced1501 236 TIGRFAM TIGR03584 PseF: pseudaminic acid cytidylyltransferase 3 225 7.0E-109 T 13-10-2018 IPR020039 Pseudaminic acid cytidylyltransferase KEGG: 00520+2.7.7.81|MetaCyc: PWY-6143 SJPD1_2794 e713af18428667e23bdd348b8ced1501 236 Pfam PF02348 Cytidylyltransferase 4 204 2.1E-36 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 SJPD1_1456 0e6955513939e5d3d2e3e4cd60972a8f 74 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 9 70 1.1E-6 T 13-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM SJPD1_1456 0e6955513939e5d3d2e3e4cd60972a8f 74 SUPERFAMILY SSF143120 7 63 7.32E-9 T 13-10-2018 IPR036165 YefM-like superfamily SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 SUPERFAMILY SSF53756 2 335 4.85E-84 T 13-10-2018 SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 333 1.0E-78 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 2 139 1.6E-25 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 2 338 28.25 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 Gene3D G3DSA:3.40.50.2000 155 307 3.5E-81 T 13-10-2018 SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 171 313 7.2E-38 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 SJPD1_2070 bcfa808af1edb6c86822d28579ebdf46 339 Gene3D G3DSA:3.40.50.2000 4 154 3.5E-81 T 13-10-2018 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 SMART SM00065 32 179 9.8E-10 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 SUPERFAMILY SSF52540 202 443 2.17E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 Gene3D G3DSA:1.10.8.60 375 447 1.5E-23 T 13-10-2018 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 Pfam PF13185 GAF domain 74 169 7.7E-9 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 Gene3D G3DSA:3.40.50.300 188 374 2.0E-69 T 13-10-2018 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 227 240 - T 13-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 415 424 - T 13-10-2018 IPR025944 Sigma-54 interaction domain, conserved site SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 Gene3D G3DSA:3.30.450.40 11 181 6.1E-33 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 Pfam PF00158 Sigma-54 interaction domain 203 369 1.4E-74 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 SMART SM00382 223 366 5.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 289 304 - T 13-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 SJPD1_1318 5cb3143d4b20935d679619f836a87973 465 SUPERFAMILY SSF55781 14 169 1.44E-19 T 13-10-2018 SJPD1_1734 bc12a1f4e6c1ab51087ba5a73420c7c6 253 Pfam PF01925 Sulfite exporter TauE/SafE 12 245 9.2E-41 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 Pfam PF02132 RecR protein 41 79 6.4E-14 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 Gene3D G3DSA:1.10.8.420 2 53 1.6E-11 T 13-10-2018 SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 Gene3D G3DSA:3.40.1360.10 78 189 2.9E-23 T 13-10-2018 SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 SUPERFAMILY SSF111304 4 189 9.02E-58 T 13-10-2018 IPR023627 Recombination protein RecR SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 TIGRFAM TIGR00615 recR: recombination protein RecR 6 187 7.5E-57 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 Hamap MF_00017 Recombination protein RecR [recR]. 1 189 61.158 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 SJPD1_0683 81eeb83ed7fa945a8b25268a92ce69d6 189 ProSitePatterns PS01300 RecR protein signature. 58 79 - T 13-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 SJPD1_2710 e5678802a0afb5bd30468f89ee6aecbb 498 SUPERFAMILY SSF53720 7 489 2.09E-154 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 SJPD1_2710 e5678802a0afb5bd30468f89ee6aecbb 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 SJPD1_2710 e5678802a0afb5bd30468f89ee6aecbb 498 Gene3D G3DSA:3.40.605.10 16 484 1.5E-156 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_2710 e5678802a0afb5bd30468f89ee6aecbb 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 287 298 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 SJPD1_2710 e5678802a0afb5bd30468f89ee6aecbb 498 Pfam PF00171 Aldehyde dehydrogenase family 20 486 2.2E-157 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 SJPD1_2710 e5678802a0afb5bd30468f89ee6aecbb 498 Gene3D G3DSA:3.40.309.10 259 456 1.5E-156 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 SUPERFAMILY SSF53807 7 428 7.85E-92 T 13-10-2018 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 25 426 2.0E-77 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 Gene3D G3DSA:3.40.50.1980 161 416 1.2E-84 T 13-10-2018 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 Gene3D G3DSA:1.20.89.10 268 428 1.2E-84 T 13-10-2018 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 Gene3D G3DSA:3.40.50.1980 25 160 1.2E-84 T 13-10-2018 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 TIGRFAM TIGR01285 nifN: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 13 427 3.6E-112 T 13-10-2018 IPR005975 Nitrogenase molybdenum-iron cofactor biosynthesis protein GO:0009399|GO:0065003 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 Gene3D G3DSA:3.40.50.1980 15 409 1.2E-84 T 13-10-2018 SJPD1_1237 1ced1bf9bb011b9039635de61c0947fb 429 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 43 50 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 SMART SM00065 23 167 2.9E-24 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 Gene3D G3DSA:3.30.450.40 1 167 1.5E-45 T 13-10-2018 IPR029016 GAF-like domain superfamily SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 Gene3D G3DSA:1.10.3210.10 168 363 3.6E-73 T 13-10-2018 SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 SUPERFAMILY SSF109604 176 351 1.95E-41 T 13-10-2018 SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 Pfam PF13185 GAF domain 21 158 3.1E-12 T 13-10-2018 IPR003018 GAF domain GO:0005515 SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 SUPERFAMILY SSF55781 6 170 3.49E-42 T 13-10-2018 SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 SMART SM00471 184 321 3.7E-9 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1228 5338c805442c5ed2c64a3b9381a0b136 363 Pfam PF01966 HD domain 190 311 7.1E-19 T 13-10-2018 IPR006674 HD domain SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 Pfam PF02410 Ribosomal silencing factor during starvation 186 276 4.0E-20 T 13-10-2018 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 184 277 3.5E-25 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 Gene3D G3DSA:3.30.460.10 181 292 1.7E-22 T 13-10-2018 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 Gene3D G3DSA:3.40.50.620 2 180 2.9E-37 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 47 1.1E-7 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 Pfam PF01467 Cytidylyltransferase-like 5 156 3.9E-18 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 5 172 9.3E-36 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 SUPERFAMILY SSF81301 181 277 3.43E-24 T 13-10-2018 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 1 178 21.622 T 13-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 176 280 17.741 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS SJPD1_0530 a06af5f31d86a06d891f21ee7212bf08 293 SUPERFAMILY SSF52374 3 158 3.38E-34 T 13-10-2018 SJPD1_2345 d9da3a5b8b870a85bafa6f32c4dc7913 260 Gene3D G3DSA:3.40.1090.10 3 105 9.6E-20 T 13-10-2018 SJPD1_2345 d9da3a5b8b870a85bafa6f32c4dc7913 260 SUPERFAMILY SSF52151 6 200 1.92E-40 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase SJPD1_2345 d9da3a5b8b870a85bafa6f32c4dc7913 260 Pfam PF01734 Patatin-like phospholipase 9 166 5.7E-13 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 SJPD1_2234 2d8cdcc5a234ed39823f4bff9a99b51e 365 Gene3D G3DSA:3.40.50.720 7 193 1.8E-52 T 13-10-2018 SJPD1_2234 2d8cdcc5a234ed39823f4bff9a99b51e 365 SUPERFAMILY SSF51735 11 337 3.81E-65 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2234 2d8cdcc5a234ed39823f4bff9a99b51e 365 Pfam PF16363 GDP-mannose 4,6 dehydratase 15 328 2.9E-35 T 13-10-2018 IPR016040 NAD(P)-binding domain SJPD1_2234 2d8cdcc5a234ed39823f4bff9a99b51e 365 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 8 351 5.3E-146 T 13-10-2018 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833 SJPD1_2234 2d8cdcc5a234ed39823f4bff9a99b51e 365 Gene3D G3DSA:3.90.25.10 194 356 3.3E-58 T 13-10-2018 SJPD1_1512 d4810c6c94f53c2d090c33abb35c561e 69 SUPERFAMILY SSF46894 2 65 1.33E-11 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1512 d4810c6c94f53c2d090c33abb35c561e 69 Gene3D G3DSA:1.10.10.10 1 67 1.3E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1512 d4810c6c94f53c2d090c33abb35c561e 69 SMART SM00862 3 65 3.2E-4 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1512 d4810c6c94f53c2d090c33abb35c561e 69 Pfam PF00486 Transcriptional regulatory protein, C terminal 2 65 1.8E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_0109 a1766c5f06e660ca42ebfafff79841a5 91 SUPERFAMILY SSF46992 3 86 1.02E-26 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0109 a1766c5f06e660ca42ebfafff79841a5 91 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 15.751 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0109 a1766c5f06e660ca42ebfafff79841a5 91 Gene3D G3DSA:1.20.58.110 1 87 1.3E-25 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0109 a1766c5f06e660ca42ebfafff79841a5 91 Pfam PF01649 Ribosomal protein S20 2 84 8.8E-25 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0109 a1766c5f06e660ca42ebfafff79841a5 91 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 1.4E-26 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_0109 a1766c5f06e660ca42ebfafff79841a5 91 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 88 2.0E-19 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2209 9c39e552bea8f9c2fe97980721476f74 356 Gene3D G3DSA:3.30.70.100 249 346 7.0E-20 T 13-10-2018 SJPD1_2209 9c39e552bea8f9c2fe97980721476f74 356 Pfam PF00924 Mechanosensitive ion channel 140 341 3.0E-65 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SJPD1_2209 9c39e552bea8f9c2fe97980721476f74 356 SUPERFAMILY SSF82689 249 352 4.32E-20 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 SJPD1_2209 9c39e552bea8f9c2fe97980721476f74 356 SUPERFAMILY SSF82861 98 181 3.4E-13 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 SJPD1_2209 9c39e552bea8f9c2fe97980721476f74 356 SUPERFAMILY SSF50182 182 248 1.18E-17 T 13-10-2018 IPR010920 LSM domain superfamily SJPD1_2209 9c39e552bea8f9c2fe97980721476f74 356 Gene3D G3DSA:2.30.30.60 198 247 3.8E-14 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily SJPD1_0857 6a3bd0c18eb3b0139da6f4fb5ee72b19 349 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 34 45 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_0857 6a3bd0c18eb3b0139da6f4fb5ee72b19 349 Pfam PF13534 4Fe-4S dicluster domain 2 49 8.3E-6 T 13-10-2018 SJPD1_0857 6a3bd0c18eb3b0139da6f4fb5ee72b19 349 SUPERFAMILY SSF46548 18 64 2.35E-6 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 SJPD1_0857 6a3bd0c18eb3b0139da6f4fb5ee72b19 349 Pfam PF02754 Cysteine-rich domain 103 183 2.9E-6 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_0857 6a3bd0c18eb3b0139da6f4fb5ee72b19 349 Pfam PF02754 Cysteine-rich domain 218 297 5.7E-7 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_2090 e509937a26dd790ab2b9c95cc1e039bf 214 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 38 1.3E-4 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 SJPD1_2090 e509937a26dd790ab2b9c95cc1e039bf 214 Pfam PF08732 HIM1 52 159 1.2E-7 T 13-10-2018 IPR014843 Protein Him1/Fmp52 SJPD1_2090 e509937a26dd790ab2b9c95cc1e039bf 214 Gene3D G3DSA:3.40.50.720 1 214 7.9E-49 T 13-10-2018 SJPD1_2090 e509937a26dd790ab2b9c95cc1e039bf 214 SUPERFAMILY SSF51735 2 192 7.19E-33 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1831 0aefcbeb9409e7796502880423acb49e 141 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 134 14.911 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 SJPD1_1831 0aefcbeb9409e7796502880423acb49e 141 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 75 1.2E-20 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 SJPD1_1831 0aefcbeb9409e7796502880423acb49e 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 4.5E-14 T 13-10-2018 SJPD1_1831 0aefcbeb9409e7796502880423acb49e 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 4.5E-14 T 13-10-2018 SJPD1_1831 0aefcbeb9409e7796502880423acb49e 141 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 4.5E-14 T 13-10-2018 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 SUPERFAMILY SSF56784 1 217 1.31E-53 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 13-10-2018 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 Gene3D G3DSA:3.40.50.1000 5 208 3.7E-52 T 13-10-2018 IPR023214 HAD superfamily SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 185 2.9E-31 T 13-10-2018 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 Gene3D G3DSA:1.10.150.240 16 85 3.7E-52 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 2.5E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 99 112 2.5E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.5E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_2404 7a171df0007ba957df09c7c8a0608b0b 218 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 79 180 3.8E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 Gene3D G3DSA:1.10.10.10 128 226 5.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 SUPERFAMILY SSF52172 2 125 2.85E-35 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 SUPERFAMILY SSF46894 134 225 2.58E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 Gene3D G3DSA:3.40.50.2300 1 127 8.6E-32 T 13-10-2018 SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 SMART SM00448 3 113 4.1E-33 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 Pfam PF00072 Response regulator receiver domain 6 113 1.9E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 SMART SM00862 148 224 2.0E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2604 a339d697d1856a82c401167328b19b1b 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 3.5E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 SMART SM00278 107 126 0.23 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 SMART SM00278 72 91 84.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Pfam PF07499 RuvA, C-terminal domain 146 185 1.1E-9 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 SUPERFAMILY SSF47781 64 129 1.22E-17 T 13-10-2018 IPR010994 RuvA domain 2-like SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Pfam PF14520 Helix-hairpin-helix domain 71 129 3.1E-17 T 13-10-2018 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Gene3D G3DSA:1.10.8.10 139 184 4.9E-8 T 13-10-2018 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Gene3D G3DSA:1.10.150.20 65 133 1.9E-22 T 13-10-2018 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 185 26.141 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 SUPERFAMILY SSF50249 1 62 4.4E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 184 8.4E-44 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Gene3D G3DSA:2.40.50.140 1 64 8.3E-14 T 13-10-2018 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 Pfam PF01330 RuvA N terminal domain 1 61 1.4E-12 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 SJPD1_1454 b68f02b8ce0235dc0241d924b21e1860 185 SUPERFAMILY SSF46929 142 184 5.1E-5 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 SMART SM00347 26 126 1.0E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 SUPERFAMILY SSF46785 5 136 5.4E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 6.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 6.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 6.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 6.7E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 ProSitePatterns PS01117 MarR-type HTH domain signature. 65 99 - T 13-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 Gene3D G3DSA:1.10.10.10 1 137 8.2E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2548 adf20b0b097321b0b0aa6213191636ec 137 Pfam PF01047 MarR family 40 90 1.9E-8 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_1031 e5d7226b22a32147e6202b2ce7a76e16 217 SUPERFAMILY SSF46785 135 213 3.98E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1031 e5d7226b22a32147e6202b2ce7a76e16 217 SUPERFAMILY SSF51206 18 132 3.27E-9 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_1031 e5d7226b22a32147e6202b2ce7a76e16 217 Gene3D G3DSA:2.60.120.10 8 131 8.9E-12 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_1031 e5d7226b22a32147e6202b2ce7a76e16 217 Gene3D G3DSA:1.10.10.10 132 215 3.9E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1031 e5d7226b22a32147e6202b2ce7a76e16 217 Pfam PF13545 Crp-like helix-turn-helix domain 137 211 3.6E-12 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0031 2784307e02b100c371c83838c2100fab 180 Gene3D G3DSA:3.30.700.20 3 177 2.8E-52 T 13-10-2018 IPR027485 AMMECR1, N-terminal SJPD1_0031 2784307e02b100c371c83838c2100fab 180 Gene3D G3DSA:3.30.1490.150 103 175 2.8E-52 T 13-10-2018 SJPD1_0031 2784307e02b100c371c83838c2100fab 180 TIGRFAM TIGR00296 TIGR00296: uncharacterized protein, PH0010 family 8 175 5.8E-33 T 13-10-2018 IPR023473 AMMECR1 SJPD1_0031 2784307e02b100c371c83838c2100fab 180 Pfam PF01871 AMMECR1 7 178 4.6E-45 T 13-10-2018 IPR002733 AMMECR1 domain SJPD1_0031 2784307e02b100c371c83838c2100fab 180 TIGRFAM TIGR04335 AmmeMemoSam_A: AmmeMemoRadiSam system protein A 4 178 4.7E-60 T 13-10-2018 IPR027623 AmmeMemoRadiSam system protein A SJPD1_0031 2784307e02b100c371c83838c2100fab 180 SUPERFAMILY SSF143447 3 180 2.75E-54 T 13-10-2018 IPR036071 AMMECR1 domain superfamily SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 Gene3D G3DSA:3.40.50.720 34 298 5.2E-88 T 13-10-2018 SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 SUPERFAMILY SSF52283 1 124 6.17E-24 T 13-10-2018 SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 Gene3D G3DSA:3.40.50.720 97 284 5.2E-88 T 13-10-2018 SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 193 215 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 35 304 7.1E-20 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 SUPERFAMILY SSF51735 104 283 4.68E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 282 1.5E-54 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 SJPD1_2713 f5f61ea735933f0f5eca935249a91ea9 306 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 222 238 - T 13-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 PIRSF PIRSF005644 1 334 4.3E-125 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 SUPERFAMILY SSF56042 155 329 3.44E-40 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 Pfam PF00586 AIR synthase related protein, N-terminal domain 37 149 5.4E-18 T 13-10-2018 IPR016188 PurM-like, N-terminal domain SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 SUPERFAMILY SSF55326 3 149 8.55E-32 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 Gene3D G3DSA:3.90.650.10 153 334 1.4E-55 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 Gene3D G3DSA:3.30.1330.10 7 152 6.5E-49 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 Pfam PF02769 AIR synthase related protein, C-terminal domain 160 306 3.3E-26 T 13-10-2018 IPR010918 PurM-like, C-terminal domain SJPD1_1414 cfe14de117f0b2e425f26cc5b37ab7df 334 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 4 334 5.4E-140 T 13-10-2018 IPR011854 Carbamoyl dehydratase HypE SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 Gene3D G3DSA:3.40.1190.10 90 286 1.6E-34 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 Gene3D G3DSA:3.90.190.20 287 436 2.4E-32 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 Pfam PF01225 Mur ligase family, catalytic domain 3 99 1.3E-20 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 Pfam PF08245 Mur ligase middle domain 106 215 2.2E-8 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 SUPERFAMILY SSF53244 289 434 2.08E-26 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 Pfam PF02875 Mur ligase family, glutamate ligase domain 291 375 1.1E-15 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 SUPERFAMILY SSF51984 2 88 4.97E-26 T 13-10-2018 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 SUPERFAMILY SSF53623 88 287 7.2E-37 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 3 389 4.5E-113 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 SJPD1_0599 470897bb947630aaddabd35ae37a3fe5 436 Gene3D G3DSA:3.40.50.720 3 88 1.1E-28 T 13-10-2018 SJPD1_0870 6cac370db82df414df49d759f35debdf 750 Gene3D G3DSA:2.40.170.20 169 750 6.0E-57 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily SJPD1_0870 6cac370db82df414df49d759f35debdf 750 Pfam PF00593 TonB dependent receptor 252 749 2.7E-27 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel SJPD1_0870 6cac370db82df414df49d759f35debdf 750 SUPERFAMILY SSF56935 22 750 3.52E-71 T 13-10-2018 SJPD1_2495 9b9dcd48f3e4d4cb3d7804bd672a4804 347 Gene3D G3DSA:3.40.50.1980 16 344 1.9E-73 T 13-10-2018 SJPD1_2495 9b9dcd48f3e4d4cb3d7804bd672a4804 347 SUPERFAMILY SSF53807 29 340 6.67E-53 T 13-10-2018 SJPD1_2495 9b9dcd48f3e4d4cb3d7804bd672a4804 347 Pfam PF01497 Periplasmic binding protein 95 279 3.5E-20 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 120 1.5E-23 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 Pfam PF00361 Proton-conducting membrane transporter 132 420 1.3E-78 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 5 611 6.1E-220 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 261 283 5.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 83 103 5.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 57 81 5.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 412 434 5.8E-10 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 156 177 1.1E-62 T 13-10-2018 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 311 323 1.1E-62 T 13-10-2018 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 413 432 1.1E-62 T 13-10-2018 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 109 129 1.1E-62 T 13-10-2018 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 221 242 1.1E-62 T 13-10-2018 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 81 106 1.1E-62 T 13-10-2018 SJPD1_0181 09e138453307c9cb7b392152747d34bc 618 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 243 269 1.1E-62 T 13-10-2018 SJPD1_1842 5e8dd1dc5c179637ef57f3b94aeb79ab 443 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 23 415 1.2E-102 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 SJPD1_1842 5e8dd1dc5c179637ef57f3b94aeb79ab 443 Pfam PF02386 Cation transport protein 15 420 4.4E-55 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 SJPD1_0752 a96b4aa129e5cfd9e6e4a48c1ddc8d2b 342 SUPERFAMILY SSF51395 1 329 5.92E-108 T 13-10-2018 SJPD1_0752 a96b4aa129e5cfd9e6e4a48c1ddc8d2b 342 Gene3D G3DSA:3.20.20.70 1 338 6.6E-112 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0752 a96b4aa129e5cfd9e6e4a48c1ddc8d2b 342 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 14 327 8.7E-73 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 SJPD1_2123 caec8e957002b751eb7da82887201a92 351 Pfam PF05145 Transition state regulatory protein AbrB 33 345 1.6E-81 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 SJPD1_2123 caec8e957002b751eb7da82887201a92 351 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 190 344 2.7E-29 T 13-10-2018 IPR017516 AbrB duplication SJPD1_2123 caec8e957002b751eb7da82887201a92 351 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 11 165 2.7E-36 T 13-10-2018 IPR017516 AbrB duplication SJPD1_2123 caec8e957002b751eb7da82887201a92 351 PIRSF PIRSF038991 1 351 7.8E-90 T 13-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 SJPD1_1033 46ebf8a9dca1481f14b12fa08089d716 190 Pfam PF12838 4Fe-4S dicluster domain 87 157 1.0E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_1033 46ebf8a9dca1481f14b12fa08089d716 190 Gene3D G3DSA:3.30.70.20 42 185 1.8E-25 T 13-10-2018 SJPD1_1033 46ebf8a9dca1481f14b12fa08089d716 190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1033 46ebf8a9dca1481f14b12fa08089d716 190 SUPERFAMILY SSF54862 4 170 2.62E-38 T 13-10-2018 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 Gene3D G3DSA:3.40.50.1980 50 190 1.7E-145 T 13-10-2018 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 TIGRFAM TIGR01284 alt_nitrog_alph: nitrogenase alpha chain 4 459 3.1E-247 T 13-10-2018 IPR005974 Nitrogenase alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 Gene3D G3DSA:3.40.50.1980 191 325 1.7E-145 T 13-10-2018 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 49 447 3.6E-94 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 Gene3D G3DSA:3.40.50.1980 14 453 1.7E-145 T 13-10-2018 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 68 75 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 136 150 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 TIGRFAM TIGR01862 N2-ase-Ialpha: nitrogenase component I, alpha chain 14 454 4.7E-205 T 13-10-2018 IPR010143 Nitrogenase component 1, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 TIGRFAM TIGR01861 ANFD: nitrogenase iron-iron protein, alpha chain 1 510 0.0 T 13-10-2018 IPR011290 Nitrogenase iron-iron protein, alpha chain GO:0009399|GO:0016163|GO:0051536|GO:0055114 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1623 c71610265fa9111dc167428a56e008e0 522 SUPERFAMILY SSF53807 5 453 2.86E-120 T 13-10-2018 SJPD1_2063 152a889b26e881eaa8e60b2442e52898 300 Gene3D G3DSA:3.30.360.10 116 294 3.6E-62 T 13-10-2018 SJPD1_2063 152a889b26e881eaa8e60b2442e52898 300 SUPERFAMILY SSF55347 143 255 6.05E-13 T 13-10-2018 SJPD1_2063 152a889b26e881eaa8e60b2442e52898 300 SUPERFAMILY SSF51735 3 170 5.65E-39 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2063 152a889b26e881eaa8e60b2442e52898 300 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 115 6.2E-24 T 13-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 SJPD1_2063 152a889b26e881eaa8e60b2442e52898 300 Gene3D G3DSA:3.40.50.720 3 284 3.6E-62 T 13-10-2018 SJPD1_1814 86cf4a644f96e00507a5fa1b2e42064f 377 Gene3D G3DSA:3.40.640.10 63 284 4.8E-126 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1814 86cf4a644f96e00507a5fa1b2e42064f 377 Pfam PF00155 Aminotransferase class I and II 39 369 3.9E-32 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_1814 86cf4a644f96e00507a5fa1b2e42064f 377 Gene3D G3DSA:3.90.1150.10 12 370 4.8E-126 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1814 86cf4a644f96e00507a5fa1b2e42064f 377 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 374 1.3E-128 T 13-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 SJPD1_1814 86cf4a644f96e00507a5fa1b2e42064f 377 SUPERFAMILY SSF53383 4 376 2.11E-85 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0686 868be4bc0ed3bc06253b36d8eff33dd7 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 454 534 3.9E-12 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain SJPD1_0686 868be4bc0ed3bc06253b36d8eff33dd7 546 Gene3D G3DSA:3.30.300.310 441 546 2.8E-26 T 13-10-2018 SJPD1_0686 868be4bc0ed3bc06253b36d8eff33dd7 546 Gene3D G3DSA:3.40.50.12780 7 440 2.8E-103 T 13-10-2018 SJPD1_0686 868be4bc0ed3bc06253b36d8eff33dd7 546 Pfam PF00501 AMP-binding enzyme 31 445 3.8E-88 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_0686 868be4bc0ed3bc06253b36d8eff33dd7 546 SUPERFAMILY SSF56801 15 545 1.19E-120 T 13-10-2018 SJPD1_1704 607cfe513bcf452a0102abd9dd40235c 429 PRINTS PR00934 X-His dipeptidase (M25) signature 219 238 2.7E-10 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 SJPD1_1704 607cfe513bcf452a0102abd9dd40235c 429 PRINTS PR00934 X-His dipeptidase (M25) signature 78 96 2.7E-10 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 SJPD1_1704 607cfe513bcf452a0102abd9dd40235c 429 SUPERFAMILY SSF53187 1 426 6.29E-40 T 13-10-2018 SJPD1_1704 607cfe513bcf452a0102abd9dd40235c 429 Gene3D G3DSA:3.40.630.10 311 429 3.6E-11 T 13-10-2018 SJPD1_1704 607cfe513bcf452a0102abd9dd40235c 429 Gene3D G3DSA:3.40.630.10 1 214 1.3E-44 T 13-10-2018 SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 SMART SM00388 148 206 0.009 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 SUPERFAMILY SSF55874 212 345 8.64E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 SUPERFAMILY SSF47384 138 200 2.35E-5 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 248 344 2.5E-13 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 Gene3D G3DSA:3.30.565.10 207 341 1.0E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 Gene3D G3DSA:1.10.287.130 152 206 1.0E-26 T 13-10-2018 SJPD1_1289 ae195d3b2874f13b6207531cd73fbe35 349 SMART SM00387 247 347 2.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2614 90293d2d3dda2fe2b3a033b3a30c3f88 393 Gene3D G3DSA:3.30.300.30 299 389 7.1E-8 T 13-10-2018 SJPD1_2614 90293d2d3dda2fe2b3a033b3a30c3f88 393 Gene3D G3DSA:3.40.50.12780 13 274 4.0E-21 T 13-10-2018 SJPD1_2614 90293d2d3dda2fe2b3a033b3a30c3f88 393 Pfam PF00501 AMP-binding enzyme 50 303 7.2E-20 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 SJPD1_2614 90293d2d3dda2fe2b3a033b3a30c3f88 393 SUPERFAMILY SSF56801 80 389 2.09E-37 T 13-10-2018 SJPD1_1122 cece4c7856ba38b7c982506adfdbdb6b 124 SUPERFAMILY SSF51182 12 105 4.46E-22 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_1122 cece4c7856ba38b7c982506adfdbdb6b 124 Pfam PF07883 Cupin domain 39 104 2.8E-12 T 13-10-2018 IPR013096 Cupin 2, conserved barrel SJPD1_1122 cece4c7856ba38b7c982506adfdbdb6b 124 Gene3D G3DSA:2.60.120.10 6 119 4.3E-26 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 Gene3D G3DSA:2.40.420.20 291 381 3.4E-21 T 13-10-2018 SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 380 6.1E-77 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 SUPERFAMILY SSF111369 58 305 6.54E-62 T 13-10-2018 SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 300 3.3E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 Gene3D G3DSA:1.10.287.470 104 177 1.4E-68 T 13-10-2018 SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 Gene3D G3DSA:2.40.50.100 69 214 1.4E-68 T 13-10-2018 SJPD1_2109 448bac129b07ae484023e38ca193c2db 385 Gene3D G3DSA:2.40.30.170 64 290 1.4E-68 T 13-10-2018 SJPD1_1660 f6940f8be2f64b3dba5f9bc57166e0ad 169 SUPERFAMILY SSF53474 10 168 4.23E-10 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1660 f6940f8be2f64b3dba5f9bc57166e0ad 169 Gene3D G3DSA:3.40.50.1820 9 169 4.1E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 SUPERFAMILY SSF58104 226 536 8.11E-56 T 13-10-2018 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 352 504 2.2E-29 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 SMART SM00283 273 535 2.6E-38 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 Gene3D G3DSA:1.10.287.950 204 537 7.7E-55 T 13-10-2018 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 400 429 6.7E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 371 398 6.7E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 8 33 6.7E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0742 4e1a459632a97ddf30d5c75ed89e3c31 537 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 180 200 6.7E-22 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1963 42091c306444cc74664f74b4e07da985 128 Gene3D G3DSA:3.30.420.270 54 120 4.4E-7 T 13-10-2018 SJPD1_1963 42091c306444cc74664f74b4e07da985 128 Pfam PF02472 Biopolymer transport protein ExbD/TolR 4 124 2.4E-19 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 SJPD1_1181 9f60a12c31506f9ad5fff1f6c49ca691 219 SUPERFAMILY SSF51306 94 213 1.83E-19 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily SJPD1_1181 9f60a12c31506f9ad5fff1f6c49ca691 219 Gene3D G3DSA:2.10.109.10 95 218 1.3E-11 T 13-10-2018 SJPD1_1181 9f60a12c31506f9ad5fff1f6c49ca691 219 Pfam PF00717 Peptidase S24-like 135 202 2.0E-11 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C SJPD1_1181 9f60a12c31506f9ad5fff1f6c49ca691 219 Gene3D G3DSA:1.10.260.40 15 75 6.6E-11 T 13-10-2018 SJPD1_1181 9f60a12c31506f9ad5fff1f6c49ca691 219 ProSitePatterns PS00501 Signal peptidases I serine active site. 137 144 - T 13-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 6 486 2.0E-156 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 494 165.922 T 13-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 SUPERFAMILY SSF52540 1 230 6.31E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 Gene3D G3DSA:3.40.50.300 1 236 5.8E-57 T 13-10-2018 SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 252 439 3.9E-54 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 SUPERFAMILY SSF52317 192 431 1.12E-35 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 Gene3D G3DSA:3.40.50.880 251 432 5.1E-25 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1523 d5dcf7a57a1edbfadd40833c33f8a483 494 Pfam PF13500 AAA domain 5 229 6.0E-26 T 13-10-2018 SJPD1_0564 ad468196f47120625a561e260985f19a 386 SUPERFAMILY SSF81342 6 261 3.45E-62 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_0564 ad468196f47120625a561e260985f19a 386 Pfam PF00033 Cytochrome b/b6/petB 9 185 1.2E-48 T 13-10-2018 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_0564 ad468196f47120625a561e260985f19a 386 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 259 365 1.6E-20 T 13-10-2018 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_0564 ad468196f47120625a561e260985f19a 386 SUPERFAMILY SSF81648 218 354 2.49E-26 T 13-10-2018 IPR036150 Cytochrome b/b6, C-terminal domain superfamily GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 SJPD1_0564 ad468196f47120625a561e260985f19a 386 Gene3D G3DSA:1.20.810.10 2 386 1.4E-101 T 13-10-2018 IPR027387 Cytochrome b/b6-like domain superfamily Reactome: R-HSA-611105 SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 Pfam PF00034 Cytochrome c 165 250 3.5E-4 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 Pfam PF00034 Cytochrome c 52 156 2.3E-11 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 SUPERFAMILY SSF46626 165 271 1.01E-21 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 SUPERFAMILY SSF46626 30 157 2.91E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 PIRSF PIRSF019225 44 163 7.1E-36 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 PIRSF PIRSF019225 159 289 1.5E-60 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 PIRSF PIRSF019225 1 48 1.6E-18 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 Gene3D G3DSA:1.10.760.10 1 161 3.8E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2274 709f49bf85f18dce4e02c7cfceef76fb 289 Gene3D G3DSA:1.10.760.10 163 261 3.9E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1088 e2dfac6cca0101d669f3c30ffacdf98c 317 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 41 275 3.1E-17 T 13-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 SJPD1_1088 e2dfac6cca0101d669f3c30ffacdf98c 317 SUPERFAMILY SSF53187 25 302 1.05E-16 T 13-10-2018 SJPD1_1088 e2dfac6cca0101d669f3c30ffacdf98c 317 Gene3D G3DSA:3.40.630.10 11 315 3.0E-41 T 13-10-2018 SJPD1_2144 35d6dc58535b967ee76cad8320415e9d 646 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 100 120 3.8E-7 T 13-10-2018 SJPD1_2144 35d6dc58535b967ee76cad8320415e9d 646 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 231 257 3.8E-7 T 13-10-2018 SJPD1_2144 35d6dc58535b967ee76cad8320415e9d 646 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 69 94 3.8E-7 T 13-10-2018 SJPD1_2144 35d6dc58535b967ee76cad8320415e9d 646 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 209 230 3.8E-7 T 13-10-2018 SJPD1_2144 35d6dc58535b967ee76cad8320415e9d 646 Pfam PF00361 Proton-conducting membrane transporter 124 418 6.6E-49 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1459 4a98c482855d9eb66c6ba975b4d79062 479 Pfam PF08245 Mur ligase middle domain 163 337 4.5E-25 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 SJPD1_1459 4a98c482855d9eb66c6ba975b4d79062 479 Gene3D G3DSA:3.90.190.20 356 473 3.5E-9 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_1459 4a98c482855d9eb66c6ba975b4d79062 479 SUPERFAMILY SSF53623 158 356 6.15E-34 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_1459 4a98c482855d9eb66c6ba975b4d79062 479 Gene3D G3DSA:3.40.1190.10 143 355 2.1E-39 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_1459 4a98c482855d9eb66c6ba975b4d79062 479 SUPERFAMILY SSF53244 357 471 8.01E-16 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_2239 ab5a2a6dcbe832d8d321f676948a90b0 340 Pfam PF16363 GDP-mannose 4,6 dehydratase 7 326 3.4E-95 T 13-10-2018 IPR016040 NAD(P)-binding domain SJPD1_2239 ab5a2a6dcbe832d8d321f676948a90b0 340 Gene3D G3DSA:3.90.25.10 207 334 8.7E-126 T 13-10-2018 SJPD1_2239 ab5a2a6dcbe832d8d321f676948a90b0 340 SUPERFAMILY SSF51735 2 336 2.4E-86 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2239 ab5a2a6dcbe832d8d321f676948a90b0 340 Gene3D G3DSA:3.40.50.720 6 327 8.7E-126 T 13-10-2018 SJPD1_2239 ab5a2a6dcbe832d8d321f676948a90b0 340 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 6 335 1.5E-140 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 SJPD1_1973 1ca7fcfd900694f2432d1f92a9f31130 189 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 9 182 1.1E-43 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 SJPD1_1973 1ca7fcfd900694f2432d1f92a9f31130 189 SUPERFAMILY SSF55811 6 184 2.44E-38 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 SJPD1_1973 1ca7fcfd900694f2432d1f92a9f31130 189 Gene3D G3DSA:3.90.79.10 40 189 1.2E-52 T 13-10-2018 SJPD1_0511 4694c403fa56fb9bd93979133258e47c 346 Pfam PF01594 AI-2E family transporter 8 337 2.5E-37 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like SJPD1_2171 7e15a35df2fd71ca6064efc937676020 285 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2171 7e15a35df2fd71ca6064efc937676020 285 Gene3D G3DSA:3.40.50.300 19 232 3.1E-60 T 13-10-2018 SJPD1_2171 7e15a35df2fd71ca6064efc937676020 285 Pfam PF00005 ABC transporter 21 155 1.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2171 7e15a35df2fd71ca6064efc937676020 285 SUPERFAMILY SSF52540 13 227 9.11E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2171 7e15a35df2fd71ca6064efc937676020 285 SMART SM00382 27 205 1.2E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 PRINTS PR00344 Bacterial sensor protein C-terminal signature 213 223 9.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 PRINTS PR00344 Bacterial sensor protein C-terminal signature 232 250 9.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 PRINTS PR00344 Bacterial sensor protein C-terminal signature 195 209 9.1E-6 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 SMART SM00387 158 271 3.6E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 Gene3D G3DSA:3.30.565.10 111 267 4.5E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 159 270 1.4E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 Gene3D G3DSA:1.10.287.130 60 110 4.5E-32 T 13-10-2018 SJPD1_2458 8e72cad1d3f4cac6613f672f2ff3486f 297 SUPERFAMILY SSF55874 103 269 3.54E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 352 8.0E-112 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 SUPERFAMILY SSF55347 113 238 2.55E-43 T 13-10-2018 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 SUPERFAMILY SSF51735 1 123 7.88E-26 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 119 6.4E-33 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 Gene3D G3DSA:3.40.50.720 1 131 9.1E-37 T 13-10-2018 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 1 356 38.925 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 127 207 1.8E-31 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 SUPERFAMILY SSF69055 267 354 1.96E-16 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 Pfam PF13288 DXP reductoisomerase C-terminal domain 237 351 1.5E-22 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 PIRSF PIRSF006205 1 356 1.9E-112 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 SJPD1_2824 1760a4449384463b9eb8b32a178dc1b7 356 Gene3D G3DSA:1.10.1740.10 278 356 8.3E-10 T 13-10-2018 SJPD1_0469 07bd2bb03e466cc2886fee5a873abfd6 501 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 8 473 1.7E-103 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 SJPD1_0469 07bd2bb03e466cc2886fee5a873abfd6 501 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 4 479 16.183 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 SJPD1_0469 07bd2bb03e466cc2886fee5a873abfd6 501 Pfam PF00361 Proton-conducting membrane transporter 127 426 7.0E-61 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0636 0904c3dd90391bd374c4228e297dab8e 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 226 1.9E-53 T 13-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 SJPD1_0636 0904c3dd90391bd374c4228e297dab8e 233 Gene3D G3DSA:3.40.50.1580 1 231 9.0E-66 T 13-10-2018 SJPD1_0636 0904c3dd90391bd374c4228e297dab8e 233 SUPERFAMILY SSF53167 1 228 7.07E-66 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 SJPD1_0636 0904c3dd90391bd374c4228e297dab8e 233 Pfam PF01048 Phosphorylase superfamily 2 225 2.0E-47 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 SJPD1_1154 d6d95f04982db635f72f4196111a8177 135 Gene3D G3DSA:3.30.70.60 1 100 1.1E-27 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 SJPD1_1154 d6d95f04982db635f72f4196111a8177 135 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 2.9E-24 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1154 d6d95f04982db635f72f4196111a8177 135 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 95 19.423 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 SJPD1_1154 d6d95f04982db635f72f4196111a8177 135 Pfam PF01250 Ribosomal protein S6 3 92 2.1E-24 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1154 d6d95f04982db635f72f4196111a8177 135 SUPERFAMILY SSF54995 1 96 2.49E-28 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1990 7bb9ac7f104ffe06b95b62c41d21756e 174 SUPERFAMILY SSF51161 5 171 6.1E-48 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_1990 7bb9ac7f104ffe06b95b62c41d21756e 174 Gene3D G3DSA:2.160.10.10 1 174 4.9E-61 T 13-10-2018 SJPD1_1990 7bb9ac7f104ffe06b95b62c41d21756e 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 95 130 1.2E-7 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_1990 7bb9ac7f104ffe06b95b62c41d21756e 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 10 44 2.7E-4 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_0082 0306aa1eed661e48912443629884f3d0 340 PIRSF PIRSF000355 1 340 4.9E-111 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0082 0306aa1eed661e48912443629884f3d0 340 SUPERFAMILY SSF47240 15 336 1.4E-86 T 13-10-2018 IPR009078 Ferritin-like superfamily SJPD1_0082 0306aa1eed661e48912443629884f3d0 340 Pfam PF00268 Ribonucleotide reductase, small chain 30 305 2.7E-65 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 SJPD1_0082 0306aa1eed661e48912443629884f3d0 340 Gene3D G3DSA:1.10.620.20 4 312 5.1E-87 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 SJPD1_2014 5c6428d64fabde44f49c10b0cb4bf727 102 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 19 97 2.4E-32 T 13-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 SJPD1_2014 5c6428d64fabde44f49c10b0cb4bf727 102 SUPERFAMILY SSF54736 18 101 1.52E-29 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like SJPD1_2014 5c6428d64fabde44f49c10b0cb4bf727 102 Gene3D G3DSA:3.30.1390.10 2 102 6.0E-39 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like SJPD1_2014 5c6428d64fabde44f49c10b0cb4bf727 102 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 11 97 25.779 T 13-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS SJPD1_2286 9f0d48b95982351b391ac4e7adcaf1ba 355 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 33 123 3.4E-12 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 SJPD1_2286 9f0d48b95982351b391ac4e7adcaf1ba 355 Gene3D G3DSA:3.90.1570.30 3 133 7.7E-8 T 13-10-2018 SJPD1_2286 9f0d48b95982351b391ac4e7adcaf1ba 355 PIRSF PIRSF035009 1 355 8.7E-123 T 13-10-2018 IPR017035 Uncharacterised conserved protein UCP035009, HsdR, All3000-type SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 SMART SM00387 443 555 1.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 Gene3D G3DSA:1.10.287.130 318 402 1.4E-11 T 13-10-2018 SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 484 498 1.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 533 1.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 512 1.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 539 552 1.6E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 445 552 5.8E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 SUPERFAMILY SSF47384 327 401 4.51E-6 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 Gene3D G3DSA:3.30.565.10 404 554 9.9E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0900 7d0c3c7103284d65d373a7bd16323d62 556 SUPERFAMILY SSF55874 401 552 7.15E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2785 8fcaaddf46a2387af0016ff322c48600 212 SUPERFAMILY SSF55729 13 147 3.32E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2785 8fcaaddf46a2387af0016ff322c48600 212 Gene3D G3DSA:3.40.630.30 1 148 4.0E-29 T 13-10-2018 SJPD1_2785 8fcaaddf46a2387af0016ff322c48600 212 Pfam PF00583 Acetyltransferase (GNAT) family 26 121 1.1E-9 T 13-10-2018 IPR000182 GNAT domain SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 SUPERFAMILY SSF53720 27 428 3.14E-81 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 5 428 40.63 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 Gene3D G3DSA:3.40.50.1980 30 232 7.2E-123 T 13-10-2018 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 Gene3D G3DSA:3.40.50.1980 234 350 7.2E-123 T 13-10-2018 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 427 2.4E-161 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 2.0E-80 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 PIRSF PIRSF000099 1 431 8.9E-169 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_1698 a54524b309c320d5c96c338326c1d488 433 Pfam PF00815 Histidinol dehydrogenase 20 428 1.7E-167 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 SJPD1_2223 5ceb1c34f11a3c94a866a306ec74350d 301 SUPERFAMILY SSF103190 13 146 9.68E-22 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_2223 5ceb1c34f11a3c94a866a306ec74350d 301 Gene3D G3DSA:3.30.450.20 36 137 2.5E-16 T 13-10-2018 SJPD1_2839 8ffd1f89419ed9ebe98395e715b195c1 301 Pfam PF00892 EamA-like transporter family 6 138 5.2E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2839 8ffd1f89419ed9ebe98395e715b195c1 301 Pfam PF00892 EamA-like transporter family 153 283 3.4E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2839 8ffd1f89419ed9ebe98395e715b195c1 301 SUPERFAMILY SSF103481 190 283 1.44E-8 T 13-10-2018 SJPD1_2839 8ffd1f89419ed9ebe98395e715b195c1 301 SUPERFAMILY SSF103481 43 140 1.57E-10 T 13-10-2018 SJPD1_0338 4b4c0b2fa443afe3ce4d48f6e99500f1 286 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 46 250 8.7E-65 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 SJPD1_0338 4b4c0b2fa443afe3ce4d48f6e99500f1 286 Gene3D G3DSA:3.40.1750.20 142 208 1.7E-55 T 13-10-2018 SJPD1_0338 4b4c0b2fa443afe3ce4d48f6e99500f1 286 Gene3D G3DSA:3.90.226.10 48 244 1.7E-55 T 13-10-2018 SJPD1_0338 4b4c0b2fa443afe3ce4d48f6e99500f1 286 Pfam PF01343 Peptidase family S49 101 252 1.0E-44 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 SJPD1_0338 4b4c0b2fa443afe3ce4d48f6e99500f1 286 SUPERFAMILY SSF52096 28 238 8.7E-32 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_1239 ce04c23542a0c811e2d8b92aa9801c25 144 Pfam PF14537 Cytochrome c3 48 133 1.3E-15 T 13-10-2018 IPR012286 Tetrahaem cytochrome domain KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 SJPD1_1239 ce04c23542a0c811e2d8b92aa9801c25 144 SUPERFAMILY SSF48695 39 134 2.75E-14 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_1239 ce04c23542a0c811e2d8b92aa9801c25 144 Gene3D G3DSA:1.10.1130.10 43 142 3.0E-18 T 13-10-2018 SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 SUPERFAMILY SSF103473 4 382 9.02E-66 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 Gene3D G3DSA:1.20.1250.20 3 382 6.1E-78 T 13-10-2018 SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 Pfam PF07690 Major Facilitator Superfamily 9 336 3.1E-44 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 PRINTS PR01035 Tetracycline resistance protein signature 98 119 8.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 PRINTS PR01035 Tetracycline resistance protein signature 14 30 8.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 PRINTS PR01035 Tetracycline resistance protein signature 128 150 8.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2655 1f277eb0e11625ec11af80f843f5c5e9 438 PRINTS PR01035 Tetracycline resistance protein signature 293 313 8.7E-5 T 13-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 3 155 1.6E-61 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 153 40.281 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 3 150 1.7E-56 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 4 17 1.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 106 125 1.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 60 76 1.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.4E-21 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 Gene3D G3DSA:3.30.420.10 1 155 1.6E-44 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 SUPERFAMILY SSF53098 2 154 3.34E-41 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_2899 ac83a22a286c1867e46d080fe197f2b0 156 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 112 147 - T 13-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 SJPD1_1749 572f12ce2e8d5d7171be01a0c3359a44 400 Pfam PF02687 FtsX-like permease family 293 392 1.7E-7 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 Gene3D G3DSA:3.40.50.2300 1 122 1.0E-26 T 13-10-2018 SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 SUPERFAMILY SSF52172 3 178 1.74E-29 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 Pfam PF00072 Response regulator receiver domain 5 114 2.6E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 SMART SM00448 3 114 6.7E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 223 1.4E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 SMART SM00862 148 223 4.7E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_2327 792490b98b8b9459e8ba57af62c09603 224 Gene3D G3DSA:1.10.10.10 123 224 2.3E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 Gene3D G3DSA:1.10.10.60 161 217 6.8E-11 T 13-10-2018 SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 Gene3D G3DSA:1.10.10.60 218 267 1.1E-13 T 13-10-2018 SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 SUPERFAMILY SSF46689 218 266 3.09E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 SUPERFAMILY SSF46689 167 215 1.84E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 SMART SM00342 182 264 1.9E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 Pfam PF12833 Helix-turn-helix domain 188 264 4.0E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 SUPERFAMILY SSF51215 25 152 1.27E-13 T 13-10-2018 IPR037923 Transcription regulator HTH-like SJPD1_2189 8bbaea75fa5b73e97f9e229602fda402 269 Pfam PF02311 AraC-like ligand binding domain 27 132 4.1E-9 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 SJPD1_0703 5cea9c91695e537264ac4d2d29e017a5 127 SUPERFAMILY SSF52172 4 125 1.15E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0703 5cea9c91695e537264ac4d2d29e017a5 127 Pfam PF00072 Response regulator receiver domain 8 120 7.4E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0703 5cea9c91695e537264ac4d2d29e017a5 127 Gene3D G3DSA:3.40.50.2300 2 126 1.8E-34 T 13-10-2018 SJPD1_0703 5cea9c91695e537264ac4d2d29e017a5 127 SMART SM00448 6 120 1.1E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 SUPERFAMILY SSF101801 18 93 4.58E-21 T 13-10-2018 IPR036429 SpoA-like superfamily SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 19 90 2.4E-23 T 13-10-2018 IPR001543 Surface presentation of antigen (SpoA) SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 Gene3D G3DSA:2.30.330.10 8 99 7.0E-25 T 13-10-2018 IPR036429 SpoA-like superfamily SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 PRINTS PR00956 Flagellar motor switch protein FliN signature 36 52 7.2E-22 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 PRINTS PR00956 Flagellar motor switch protein FliN signature 19 35 7.2E-22 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 PRINTS PR00956 Flagellar motor switch protein FliN signature 52 65 7.2E-22 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 PRINTS PR00956 Flagellar motor switch protein FliN signature 65 80 7.2E-22 T 13-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 SJPD1_0650 12ce7b36958f18db435ca46cc8897924 103 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 19 91 1.2E-25 T 13-10-2018 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 SJPD1_1246 8c6bb21ec490528fda68521e8f2a631c 118 Gene3D G3DSA:3.30.420.130 1 114 1.1E-21 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_1246 8c6bb21ec490528fda68521e8f2a631c 118 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 12 99 4.6E-13 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis SJPD1_1246 8c6bb21ec490528fda68521e8f2a631c 118 SUPERFAMILY SSF53146 2 113 7.33E-22 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_1003 1280a42a0448f7f2cc77f8c81bb0fc1a 98 SUPERFAMILY SSF46626 6 96 2.12E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1003 1280a42a0448f7f2cc77f8c81bb0fc1a 98 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 18 91 4.9E-10 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1003 1280a42a0448f7f2cc77f8c81bb0fc1a 98 Gene3D G3DSA:1.10.760.10 19 96 2.3E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0411 7fbff1c818c6bc9b1f2686353d7df5e3 419 SUPERFAMILY SSF52540 17 256 6.11E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0411 7fbff1c818c6bc9b1f2686353d7df5e3 419 Gene3D G3DSA:3.40.50.300 7 209 6.2E-7 T 13-10-2018 SJPD1_0659 801ff9343a4a4f0775d6657ebcf64059 307 Pfam PF03547 Membrane transport protein 3 142 4.1E-18 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 SJPD1_2244 fb996f7dfcb7ae8d7e496e5510d2f781 296 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 288 1.1E-53 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 SJPD1_2473 6db3ccff62581d7f9bd196a55ad57e5c 208 Pfam PF01810 LysE type translocator 15 206 3.1E-31 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_2473 6db3ccff62581d7f9bd196a55ad57e5c 208 PIRSF PIRSF006324 1 208 3.2E-52 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1275 0341627f6dc1aaa6d3e74ee6d2502e94 284 Gene3D G3DSA:3.30.470.10 1 117 3.3E-28 T 13-10-2018 SJPD1_1275 0341627f6dc1aaa6d3e74ee6d2502e94 284 SUPERFAMILY SSF56752 4 276 8.63E-70 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 SJPD1_1275 0341627f6dc1aaa6d3e74ee6d2502e94 284 Pfam PF01063 Amino-transferase class IV 31 253 2.0E-38 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 SJPD1_1275 0341627f6dc1aaa6d3e74ee6d2502e94 284 Gene3D G3DSA:3.20.10.10 123 283 2.8E-51 T 13-10-2018 SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 SUPERFAMILY SSF52172 1 180 9.96E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 SMART SM00862 145 217 7.9E-9 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 SMART SM00448 1 112 1.9E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 Gene3D G3DSA:3.40.50.2300 1 132 2.4E-29 T 13-10-2018 SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 217 2.0E-11 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 Gene3D G3DSA:1.10.10.10 133 221 3.6E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1857 0ce289ee4fcbdac7de795110c8434228 222 Pfam PF00072 Response regulator receiver domain 3 112 3.2E-23 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1216 24a1e92c06bd85cc1bb074721af33ebb 146 Gene3D G3DSA:1.20.120.1630 1 146 1.0E-28 T 13-10-2018 SJPD1_1216 24a1e92c06bd85cc1bb074721af33ebb 146 Pfam PF04191 Phospholipid methyltransferase 39 121 1.0E-9 T 13-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 SJPD1_0484 9c3262f8c0ba139d8b9ddece4fc97cf7 74 Pfam PF02069 Prokaryotic metallothionein 44 72 4.2E-7 T 13-10-2018 IPR000518 Metallothionein, family 14, prokaryote GO:0046872 SJPD1_0484 9c3262f8c0ba139d8b9ddece4fc97cf7 74 Gene3D G3DSA:2.30.170.10 40 73 1.4E-6 T 13-10-2018 SJPD1_0484 9c3262f8c0ba139d8b9ddece4fc97cf7 74 SUPERFAMILY SSF57868 44 71 2.02E-5 T 13-10-2018 IPR017854 Metallothionein domain superfamily GO:0046872 SJPD1_0986 17507f11ebf72824f2803d26391d52dd 275 Pfam PF12679 ABC-2 family transporter protein 7 273 1.8E-20 T 13-10-2018 IPR032688 ABC-2 family transporter protein GO:0055085 SJPD1_1998 63698d3127a9e326c6ae63da30967f01 268 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 258 6.1E-78 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like SJPD1_1998 63698d3127a9e326c6ae63da30967f01 268 SUPERFAMILY SSF56300 1 243 7.27E-70 T 13-10-2018 SJPD1_1998 63698d3127a9e326c6ae63da30967f01 268 PIRSF PIRSF004789 1 262 7.4E-91 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like SJPD1_1998 63698d3127a9e326c6ae63da30967f01 268 Gene3D G3DSA:3.60.21.10 1 268 2.1E-94 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like SJPD1_1998 63698d3127a9e326c6ae63da30967f01 268 Pfam PF13277 YmdB-like protein 5 246 1.3E-91 T 13-10-2018 IPR005235 Metallophosphoesterase, YmdB-like SJPD1_1536 7a4f9a50a3ecb219081f251fdc431477 234 Gene3D G3DSA:3.30.950.10 128 230 1.4E-21 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1536 7a4f9a50a3ecb219081f251fdc431477 234 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 207 1.6E-44 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_1536 7a4f9a50a3ecb219081f251fdc431477 234 Gene3D G3DSA:3.40.1010.10 1 126 2.1E-29 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1536 7a4f9a50a3ecb219081f251fdc431477 234 SUPERFAMILY SSF53790 3 228 1.44E-41 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_1536 7a4f9a50a3ecb219081f251fdc431477 234 PIRSF PIRSF036427 1 232 3.0E-70 T 13-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 SJPD1_1536 7a4f9a50a3ecb219081f251fdc431477 234 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 228 3.7E-66 T 13-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 Pfam PF00512 His Kinase A (phospho-acceptor) domain 285 345 4.0E-7 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 Gene3D G3DSA:1.10.287.130 258 350 3.3E-13 T 13-10-2018 SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 Gene3D G3DSA:3.30.450.20 129 252 2.2E-29 T 13-10-2018 SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SMART SM00086 210 253 0.0082 T 13-10-2018 IPR001610 PAC motif SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SMART SM00091 136 204 0.0016 T 13-10-2018 IPR000014 PAS domain SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SUPERFAMILY SSF55785 151 250 2.42E-25 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 Pfam PF13426 PAS domain 149 252 2.7E-16 T 13-10-2018 IPR000014 PAS domain SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SUPERFAMILY SSF55874 337 497 3.8E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SUPERFAMILY SSF47384 264 348 3.34E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 Gene3D G3DSA:3.30.565.10 353 501 8.0E-21 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SMART SM00388 276 347 1.8E-5 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 SMART SM00387 393 503 7.5E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 394 501 2.6E-10 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2455 f37fb3fdf5fc6f3bea11b3ac919d7d4f 503 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 142 259 4.7E-19 T 13-10-2018 IPR000014 PAS domain SJPD1_1484 8a4b77b21b123d5044759c48483884d3 276 SUPERFAMILY SSF46565 205 265 5.1E-12 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1484 8a4b77b21b123d5044759c48483884d3 276 SMART SM00271 206 269 2.0E-7 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1484 8a4b77b21b123d5044759c48483884d3 276 Gene3D G3DSA:1.10.287.110 203 270 2.4E-10 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_1484 8a4b77b21b123d5044759c48483884d3 276 Pfam PF00226 DnaJ domain 208 265 4.2E-10 T 13-10-2018 IPR001623 DnaJ domain SJPD1_1218 5492b39a264cf7450f7b878dfc7735ed 130 SUPERFAMILY SSF52833 23 125 3.65E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1218 5492b39a264cf7450f7b878dfc7735ed 130 Gene3D G3DSA:3.40.30.10 19 129 1.7E-16 T 13-10-2018 SJPD1_1218 5492b39a264cf7450f7b878dfc7735ed 130 Pfam PF13899 Thioredoxin-like 23 99 6.5E-11 T 13-10-2018 SJPD1_0502 51fbe3ea4e0d234b500a80603083c094 142 Pfam PF00011 Hsp20/alpha crystallin family 42 142 9.3E-29 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain SJPD1_0502 51fbe3ea4e0d234b500a80603083c094 142 SUPERFAMILY SSF49764 20 141 1.41E-38 T 13-10-2018 IPR008978 HSP20-like chaperone SJPD1_0502 51fbe3ea4e0d234b500a80603083c094 142 Gene3D G3DSA:2.60.40.790 4 142 4.2E-38 T 13-10-2018 IPR008978 HSP20-like chaperone SJPD1_2845 111c0dfd0290234b45c346e653d21772 169 Pfam PF14358 Domain of unknown function (DUF4405) 8 59 5.9E-8 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 SJPD1_1978 4cd875f00aa4b5eeefb1fd95d8a1bf30 267 Pfam PF03631 Virulence factor BrkB 18 259 1.1E-45 T 13-10-2018 IPR017039 Virulence factor BrkB SJPD1_1978 4cd875f00aa4b5eeefb1fd95d8a1bf30 267 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 9 259 3.8E-49 T 13-10-2018 IPR017039 Virulence factor BrkB SJPD1_1978 4cd875f00aa4b5eeefb1fd95d8a1bf30 267 PIRSF PIRSF035875 4 267 2.2E-44 T 13-10-2018 IPR017039 Virulence factor BrkB SJPD1_1530 f20ab686be4bd1b44b1aa767b9cbda3d 255 Gene3D G3DSA:3.40.50.300 3 254 2.3E-63 T 13-10-2018 SJPD1_1530 f20ab686be4bd1b44b1aa767b9cbda3d 255 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_1530 f20ab686be4bd1b44b1aa767b9cbda3d 255 SUPERFAMILY SSF52540 4 230 1.23E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1530 f20ab686be4bd1b44b1aa767b9cbda3d 255 SMART SM00382 28 216 1.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1530 f20ab686be4bd1b44b1aa767b9cbda3d 255 Pfam PF00005 ABC transporter 19 168 8.8E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 2 235 8.6E-73 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 Gene3D G3DSA:3.30.70.980 82 234 3.7E-47 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 Gene3D G3DSA:1.10.10.200 21 77 3.5E-24 T 13-10-2018 IPR017856 Integrase-like, N-terminal SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 SUPERFAMILY SSF75625 1 235 2.22E-73 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 Gene3D G3DSA:3.30.70.980 131 201 3.7E-47 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 Pfam PF01709 Transcriptional regulator 5 235 2.7E-74 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0924 8cc1dbb3938adb43a07606d02e31e1e2 236 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 236 25.782 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 Gene3D G3DSA:3.40.50.2300 6 145 2.9E-31 T 13-10-2018 SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 SMART SM00448 22 132 2.2E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 SUPERFAMILY SSF52172 20 185 1.99E-34 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 165 237 5.0E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 SMART SM00862 164 237 1.0E-14 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 Pfam PF00072 Response regulator receiver domain 24 129 1.2E-21 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1229 f33c0b6d59a43776facfb6fea0a14b3a 239 Gene3D G3DSA:1.10.10.10 146 239 2.1E-22 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 Gene3D G3DSA:3.40.50.880 245 420 6.9E-11 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 6 416 2.1E-78 T 13-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 238 410 1.1E-24 T 13-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 SUPERFAMILY SSF52317 237 418 3.93E-22 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 SUPERFAMILY SSF52540 1 177 1.65E-29 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 175 3.3E-9 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain SJPD1_1543 eb516be2ac2065f922f37427839b2334 420 Gene3D G3DSA:3.40.50.300 2 183 1.6E-18 T 13-10-2018 SJPD1_1890 38ffb498c353b5f372f3d9e46cfc9fea 82 SUPERFAMILY SSF48452 5 50 2.04E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1890 38ffb498c353b5f372f3d9e46cfc9fea 82 Gene3D G3DSA:1.25.40.10 2 50 1.5E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1365 0a536f0d82143933626bcf73374491e3 120 Gene3D G3DSA:3.30.160.170 19 116 3.8E-17 T 13-10-2018 IPR035924 FlaG-like superfamily SJPD1_1365 0a536f0d82143933626bcf73374491e3 120 SUPERFAMILY SSF160214 20 119 1.96E-25 T 13-10-2018 IPR035924 FlaG-like superfamily SJPD1_1365 0a536f0d82143933626bcf73374491e3 120 Pfam PF03646 FlaG protein 24 118 2.8E-24 T 13-10-2018 IPR005186 FlaG protein SJPD1_0866 24b80953873807b31ea66c54e6f36d56 377 SUPERFAMILY SSF51690 115 369 3.14E-31 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 SJPD1_0866 24b80953873807b31ea66c54e6f36d56 377 SUPERFAMILY SSF54675 13 107 5.5E-6 T 13-10-2018 SJPD1_0866 24b80953873807b31ea66c54e6f36d56 377 Gene3D G3DSA:3.20.20.70 106 346 4.8E-22 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_2235 3adedfd15280bb6cf27aa44652cbfc3a 257 SUPERFAMILY SSF53448 1 257 4.73E-67 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2235 3adedfd15280bb6cf27aa44652cbfc3a 257 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 257 2.3E-127 T 13-10-2018 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940 SJPD1_2235 3adedfd15280bb6cf27aa44652cbfc3a 257 Pfam PF00483 Nucleotidyl transferase 3 202 4.7E-19 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 SJPD1_2235 3adedfd15280bb6cf27aa44652cbfc3a 257 Gene3D G3DSA:3.90.550.10 1 257 4.4E-72 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1138 26dfd011f7271ed87e72402a40f6700c 98 Pfam PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter 18 64 1.5E-9 T 13-10-2018 IPR032820 Putative F0F1-ATPase subunit, Ca2+/Mg2+ transporter SJPD1_2383 d028f750ee3c13b63c63ad8935624987 782 Pfam PF12705 PD-(D/E)XK nuclease superfamily 542 776 2.4E-32 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type SJPD1_2383 d028f750ee3c13b63c63ad8935624987 782 SUPERFAMILY SSF52980 543 723 9.65E-11 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 SJPD1_2383 d028f750ee3c13b63c63ad8935624987 782 Gene3D G3DSA:3.40.50.300 393 515 5.0E-8 T 13-10-2018 SJPD1_2383 d028f750ee3c13b63c63ad8935624987 782 SUPERFAMILY SSF52540 224 517 3.45E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1400 decfa4e1d2182fbe4284a0c157141c49 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 1.5E-16 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1400 decfa4e1d2182fbe4284a0c157141c49 196 SUPERFAMILY SSF46689 6 81 1.42E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1400 decfa4e1d2182fbe4284a0c157141c49 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 2.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1400 decfa4e1d2182fbe4284a0c157141c49 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 2.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1400 decfa4e1d2182fbe4284a0c157141c49 196 Gene3D G3DSA:1.10.357.10 4 194 1.1E-30 T 13-10-2018 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 Hamap MF_00580 10 kDa chaperonin [groS]. 2 88 18.233 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 SMART SM00883 2 88 8.2E-40 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 PRINTS PR00297 10kDa chaperonin signature 25 46 1.8E-21 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 PRINTS PR00297 10kDa chaperonin signature 54 66 1.8E-21 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 PRINTS PR00297 10kDa chaperonin signature 3 18 1.8E-21 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 PRINTS PR00297 10kDa chaperonin signature 75 88 1.8E-21 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 Pfam PF00166 Chaperonin 10 Kd subunit 3 87 1.7E-25 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 SUPERFAMILY SSF50129 1 87 8.71E-24 T 13-10-2018 IPR011032 GroES-like superfamily SJPD1_0932 20aa7046c031a118bd6285ec8550d231 88 Gene3D G3DSA:2.30.33.40 1 88 1.0E-25 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 SJPD1_2671 82c61c447802756d736d9d7b57b79ab7 363 Gene3D G3DSA:3.30.70.270 190 346 1.0E-14 T 13-10-2018 SJPD1_2671 82c61c447802756d736d9d7b57b79ab7 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 194 325 9.3E-12 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2671 82c61c447802756d736d9d7b57b79ab7 363 SMART SM00267 185 351 2.3E-4 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2671 82c61c447802756d736d9d7b57b79ab7 363 SUPERFAMILY SSF55073 203 332 1.57E-11 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_2671 82c61c447802756d736d9d7b57b79ab7 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 198 325 3.2E-9 T 13-10-2018 IPR000160 GGDEF domain SJPD1_2147 bd08c7401c22833c56f53c9961cd1920 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 312 324 4.2E-7 T 13-10-2018 SJPD1_2147 bd08c7401c22833c56f53c9961cd1920 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 66 91 4.2E-7 T 13-10-2018 SJPD1_2147 bd08c7401c22833c56f53c9961cd1920 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 219 240 4.2E-7 T 13-10-2018 SJPD1_2147 bd08c7401c22833c56f53c9961cd1920 489 Pfam PF00361 Proton-conducting membrane transporter 126 418 7.1E-56 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2147 bd08c7401c22833c56f53c9961cd1920 489 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 63 110 7.9E-6 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0889 c3d1a74c6a40cf9abd2096f01c6351d9 374 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 10 357 6.2E-68 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 SJPD1_2659 d85ad41232155c56c304886e36f17c93 475 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 29 469 9.1E-67 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_2659 d85ad41232155c56c304886e36f17c93 475 Pfam PF00939 Sodium:sulfate symporter transmembrane region 10 474 3.9E-73 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 SUPERFAMILY SSF50677 198 347 5.89E-60 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Gene3D G3DSA:3.90.740.10 183 349 5.9E-293 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Pfam PF08264 Anticodon-binding domain of tRNA 622 754 1.2E-27 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Gene3D G3DSA:1.10.730.10 9 746 5.9E-293 T 13-10-2018 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Hamap MF_02004 Valine--tRNA ligase [valS]. 3 877 14.775 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 SUPERFAMILY SSF47323 590 796 7.29E-42 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 817 876 2.2E-11 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 TIGRFAM TIGR00422 valS: valine--tRNA ligase 8 857 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 PRINTS PR00986 Valyl-tRNA synthetase signature 237 254 1.9E-28 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 PRINTS PR00986 Valyl-tRNA synthetase signature 450 471 1.9E-28 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 PRINTS PR00986 Valyl-tRNA synthetase signature 352 365 1.9E-28 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 PRINTS PR00986 Valyl-tRNA synthetase signature 44 55 1.9E-28 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Gene3D G3DSA:3.40.50.620 26 539 5.9E-293 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 19 578 6.2E-189 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 51 62 - T 13-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 Gene3D G3DSA:1.10.287.380 806 877 2.0E-9 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 SUPERFAMILY SSF52374 7 588 7.04E-131 T 13-10-2018 SJPD1_1695 46a8a0a7763af31cb8d43ea57c5a09df 878 SUPERFAMILY SSF46589 812 876 1.36E-11 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 Gene3D G3DSA:1.10.10.10 59 146 8.6E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 SMART SM00862 74 144 7.2E-15 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 Pfam PF00072 Response regulator receiver domain 1 40 4.1E-5 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 SUPERFAMILY SSF46894 63 143 9.07E-17 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 SUPERFAMILY SSF52172 3 46 4.55E-8 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 Pfam PF00486 Transcriptional regulatory protein, C terminal 76 143 4.7E-16 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 SJPD1_1068 4c21372edc3cd6ca15c92b46f829301a 146 Gene3D G3DSA:3.40.50.2300 1 51 4.3E-6 T 13-10-2018 SJPD1_0139 fe2f22f52a0a2485cc50aa514d4504e5 199 Pfam PF01625 Peptide methionine sulfoxide reductase 30 179 8.9E-66 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 SJPD1_0139 fe2f22f52a0a2485cc50aa514d4504e5 199 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 28 179 4.4E-61 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 SJPD1_0139 fe2f22f52a0a2485cc50aa514d4504e5 199 SUPERFAMILY SSF55068 12 190 7.32E-77 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 SJPD1_0139 fe2f22f52a0a2485cc50aa514d4504e5 199 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 27 184 37.395 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 SJPD1_0139 fe2f22f52a0a2485cc50aa514d4504e5 199 Gene3D G3DSA:3.30.1060.10 8 189 6.1E-74 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 SJPD1_0805 86cbabaa53e69e56c038605b468d5b1b 279 Pfam PF00990 Diguanylate cyclase, GGDEF domain 114 273 2.5E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0805 86cbabaa53e69e56c038605b468d5b1b 279 SUPERFAMILY SSF55073 118 276 4.87E-47 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0805 86cbabaa53e69e56c038605b468d5b1b 279 SMART SM00267 102 277 4.8E-55 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0805 86cbabaa53e69e56c038605b468d5b1b 279 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 109 277 3.2E-53 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0805 86cbabaa53e69e56c038605b468d5b1b 279 Gene3D G3DSA:3.30.70.270 108 278 4.8E-55 T 13-10-2018 SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 SUPERFAMILY SSF51735 2 249 2.3E-71 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 248 6.5E-55 T 13-10-2018 SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 1.8E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 8.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 8.6E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0331 f4f5ba733d3774717f16f0a26f5e6ff3 250 Gene3D G3DSA:3.40.50.720 1 249 1.0E-70 T 13-10-2018 SJPD1_1319 513b9dfb0cde7b2c0e0e28b6e0c653c6 276 Pfam PF13289 SIR2-like domain 110 262 9.0E-7 T 13-10-2018 IPR039444 SIR2-like domain SJPD1_0881 f3751fbbbca0b37614b3e216930f4657 178 SMART SM00091 6 73 4.6E-4 T 13-10-2018 IPR000014 PAS domain SJPD1_0881 f3751fbbbca0b37614b3e216930f4657 178 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 105 1.1E-15 T 13-10-2018 IPR000014 PAS domain SJPD1_0881 f3751fbbbca0b37614b3e216930f4657 178 Gene3D G3DSA:3.30.450.20 2 161 5.0E-22 T 13-10-2018 SJPD1_0881 f3751fbbbca0b37614b3e216930f4657 178 SUPERFAMILY SSF55785 19 109 3.54E-25 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0881 f3751fbbbca0b37614b3e216930f4657 178 Pfam PF08447 PAS fold 30 110 2.0E-15 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_2121 325ebe867c5eed8f0bd883d837f6a6cf 99 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 7 95 7.3E-29 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 SJPD1_2121 325ebe867c5eed8f0bd883d837f6a6cf 99 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 2 98 21.74 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 SJPD1_2121 325ebe867c5eed8f0bd883d837f6a6cf 99 PIRSF PIRSF002736 2 98 3.3E-33 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 SJPD1_2121 325ebe867c5eed8f0bd883d837f6a6cf 99 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 6 87 9.5E-28 T 13-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein SJPD1_2121 325ebe867c5eed8f0bd883d837f6a6cf 99 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 7 83 2.0E-9 T 13-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 SJPD1_0705 16cb851999834838d35412c99e7f7456 132 Gene3D G3DSA:1.25.40.10 17 129 5.7E-18 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0705 16cb851999834838d35412c99e7f7456 132 SMART SM00671 49 84 1.4E-8 T 13-10-2018 IPR006597 Sel1-like repeat SJPD1_0705 16cb851999834838d35412c99e7f7456 132 SUPERFAMILY SSF81901 26 114 1.02E-14 T 13-10-2018 SJPD1_1402 d57c96b36149b36bff0ba562b2d8900f 447 SUPERFAMILY SSF56762 3 446 3.66E-77 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1402 d57c96b36149b36bff0ba562b2d8900f 447 Gene3D G3DSA:1.10.645.10 1 447 2.2E-90 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1402 d57c96b36149b36bff0ba562b2d8900f 447 Pfam PF00374 Nickel-dependent hydrogenase 137 445 1.2E-23 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 SJPD1_1402 d57c96b36149b36bff0ba562b2d8900f 447 Pfam PF00374 Nickel-dependent hydrogenase 37 112 4.5E-15 T 13-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 SJPD1_1402 d57c96b36149b36bff0ba562b2d8900f 447 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 37 62 - T 13-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 SJPD1_2348 c780251e51221fb7bc27e4afa8e35ab5 466 Pfam PF00999 Sodium/hydrogen exchanger family 68 455 7.5E-63 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SJPD1_2348 c780251e51221fb7bc27e4afa8e35ab5 466 Gene3D G3DSA:1.20.1530.20 62 464 9.5E-100 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_0026 aad040c25fb42ad4b87b84c87123cf15 140 Pfam PF13160 Protein of unknown function (DUF3995) 12 133 1.7E-27 T 13-10-2018 IPR025058 Protein of unknown function DUF3995 SJPD1_1262 d4ac3d86a246899fcb435f4e3b6d5e95 295 SMART SM00880 20 274 3.5E-21 T 13-10-2018 IPR007899 CHAD domain SJPD1_1262 d4ac3d86a246899fcb435f4e3b6d5e95 295 Pfam PF05235 CHAD domain 23 240 1.2E-29 T 13-10-2018 IPR007899 CHAD domain SJPD1_1262 d4ac3d86a246899fcb435f4e3b6d5e95 295 Gene3D G3DSA:1.40.20.10 3 293 4.9E-40 T 13-10-2018 IPR038186 CHAD domain superfamily SJPD1_2343 a4e590fa465532f6ffb652c55fa09cf8 179 SUPERFAMILY SSF55620 1 176 2.45E-23 T 13-10-2018 SJPD1_2343 a4e590fa465532f6ffb652c55fa09cf8 179 Gene3D G3DSA:3.30.479.10 1 179 4.5E-52 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 SJPD1_2343 a4e590fa465532f6ffb652c55fa09cf8 179 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 4 177 1.7E-31 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 SJPD1_1514 bf176e6275b7916e5295d29a37dbbcfd 153 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 50 101 2.4E-15 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain SJPD1_1489 bf176e6275b7916e5295d29a37dbbcfd 153 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 50 101 2.4E-15 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain SJPD1_0976 bf176e6275b7916e5295d29a37dbbcfd 153 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 50 101 2.4E-15 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain SJPD1_1645 bf176e6275b7916e5295d29a37dbbcfd 153 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 50 101 2.4E-15 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain SJPD1_0245 bf176e6275b7916e5295d29a37dbbcfd 153 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 50 101 2.4E-15 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain SJPD1_1066 bf176e6275b7916e5295d29a37dbbcfd 153 Pfam PF13613 Helix-turn-helix of DDE superfamily endonuclease 50 101 2.4E-15 T 13-10-2018 IPR027805 Transposase, Helix-turn-helix domain SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 223 235 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 175 190 - T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 46 55 3.8E-23 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 106 118 3.8E-23 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 146 158 3.8E-23 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 168 180 3.8E-23 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 118 132 3.8E-23 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 236 246 3.8E-23 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 48 67 1.2E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 175 195 1.2E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 67 87 1.2E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 220 245 1.2E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 196 217 1.2E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 87 106 1.2E-65 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 Pfam PF00813 FliP family 50 242 8.5E-81 T 13-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 SJPD1_1391 0a6ef9aec7ae8caecb009536ac1fc611 247 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 50 246 3.8E-86 T 13-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 SJPD1_2778 e7d06bba4b02f16ebfa00d8aba8945c7 210 SUPERFAMILY SSF53271 3 206 2.36E-66 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_2778 e7d06bba4b02f16ebfa00d8aba8945c7 210 Gene3D G3DSA:3.40.50.2020 1 208 1.1E-76 T 13-10-2018 SJPD1_2778 e7d06bba4b02f16ebfa00d8aba8945c7 210 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 208 42.622 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 SJPD1_2778 e7d06bba4b02f16ebfa00d8aba8945c7 210 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 3.4E-82 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 SJPD1_2778 e7d06bba4b02f16ebfa00d8aba8945c7 210 Pfam PF14681 Uracil phosphoribosyltransferase 6 207 6.4E-65 T 13-10-2018 SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 SMART SM00471 21 149 1.8E-4 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 SMART SM00471 228 364 34.0 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 Gene3D G3DSA:1.10.3210.10 9 183 1.2E-23 T 13-10-2018 SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 Gene3D G3DSA:1.10.3210.10 211 384 4.8E-20 T 13-10-2018 SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 SUPERFAMILY SSF109604 17 178 4.59E-19 T 13-10-2018 SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 SUPERFAMILY SSF109604 223 380 1.47E-11 T 13-10-2018 SJPD1_2261 22859a902c321ca3c97d71ef60bad02c 411 Pfam PF01966 HD domain 27 139 1.9E-10 T 13-10-2018 IPR006674 HD domain SJPD1_1173 456d06359056afdc4a996a2e137744b0 178 Pfam PF03748 Flagellar basal body-associated protein FliL 83 178 8.4E-26 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 SJPD1_2170 3209dda790f90f086ba187d451d6dcc6 236 Pfam PF13531 Bacterial extracellular solute-binding protein 22 235 4.0E-18 T 13-10-2018 SJPD1_2170 3209dda790f90f086ba187d451d6dcc6 236 Gene3D G3DSA:3.40.190.10 94 198 1.7E-31 T 13-10-2018 SJPD1_2170 3209dda790f90f086ba187d451d6dcc6 236 SUPERFAMILY SSF53850 21 235 6.62E-34 T 13-10-2018 SJPD1_2170 3209dda790f90f086ba187d451d6dcc6 236 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 31 235 4.0E-26 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 SJPD1_2170 3209dda790f90f086ba187d451d6dcc6 236 Gene3D G3DSA:3.40.190.10 25 235 1.7E-31 T 13-10-2018 SJPD1_2761 5b4b1c5b1bf2c0af6a4ed31463bcaadb 268 Pfam PF00899 ThiF family 12 246 1.8E-66 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SJPD1_2761 5b4b1c5b1bf2c0af6a4ed31463bcaadb 268 Gene3D G3DSA:3.40.50.720 4 256 1.2E-94 T 13-10-2018 SJPD1_2761 5b4b1c5b1bf2c0af6a4ed31463bcaadb 268 SUPERFAMILY SSF69572 2 251 3.79E-97 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 SJPD1_0359 c599da92d9e379c4176223d169c0a5e0 190 SUPERFAMILY SSF53271 49 189 1.04E-14 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like SJPD1_0359 c599da92d9e379c4176223d169c0a5e0 190 Pfam PF00156 Phosphoribosyl transferase domain 147 188 2.8E-7 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 SJPD1_0359 c599da92d9e379c4176223d169c0a5e0 190 Gene3D G3DSA:3.40.50.2020 56 190 4.3E-11 T 13-10-2018 SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 Pfam PF13545 Crp-like helix-turn-helix domain 156 218 6.6E-11 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 Gene3D G3DSA:2.60.120.10 3 146 1.1E-21 T 13-10-2018 IPR014710 RmlC-like jelly roll fold SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 Gene3D G3DSA:1.10.10.10 152 218 2.4E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 SUPERFAMILY SSF51206 8 142 3.54E-23 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 SMART SM00419 164 211 0.0098 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 Pfam PF00027 Cyclic nucleotide-binding domain 33 120 4.4E-7 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain SJPD1_0849 a132a9f7b80ecd6cebf27658b399cc9f 220 SUPERFAMILY SSF46785 155 219 9.41E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0578 46e4fc6e93e1a7a29215d0b9d25a7a92 355 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 330 1.6E-36 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 SJPD1_2732 a49439e6b843e8f844e9c1b0e1a05e47 98 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 18 92 4.1E-10 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2732 a49439e6b843e8f844e9c1b0e1a05e47 98 SUPERFAMILY SSF46626 7 96 9.46E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2732 a49439e6b843e8f844e9c1b0e1a05e47 98 Gene3D G3DSA:1.10.760.10 19 96 1.9E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1433 230060b51d5f535675d65e0ebd9365e7 146 Gene3D G3DSA:1.25.40.20 2 145 1.6E-31 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily SJPD1_1433 230060b51d5f535675d65e0ebd9365e7 146 Pfam PF12796 Ankyrin repeats (3 copies) 30 117 8.4E-15 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain SJPD1_1433 230060b51d5f535675d65e0ebd9365e7 146 SUPERFAMILY SSF48403 11 138 5.13E-30 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily SJPD1_1433 230060b51d5f535675d65e0ebd9365e7 146 SMART SM00248 25 54 0.056 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 SJPD1_1433 230060b51d5f535675d65e0ebd9365e7 146 SMART SM00248 91 120 0.027 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 SJPD1_1433 230060b51d5f535675d65e0ebd9365e7 146 SMART SM00248 58 87 0.24 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 SJPD1_0080 ca36cf5ac55da477a8c643b15e7e1873 219 Gene3D G3DSA:3.40.50.150 3 218 2.7E-59 T 13-10-2018 SJPD1_0080 ca36cf5ac55da477a8c643b15e7e1873 219 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 24 217 2.4E-55 T 13-10-2018 SJPD1_0080 ca36cf5ac55da477a8c643b15e7e1873 219 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 140 155 - T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 SJPD1_0080 ca36cf5ac55da477a8c643b15e7e1873 219 SUPERFAMILY SSF53335 29 217 2.5E-36 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0080 ca36cf5ac55da477a8c643b15e7e1873 219 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 14 218 8.4E-64 T 13-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 SJPD1_0127 1ff5896cb660db2c7e44af9ad7e05fb1 120 Pfam PF01219 Prokaryotic diacylglycerol kinase 15 113 9.9E-28 T 13-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 SJPD1_0127 1ff5896cb660db2c7e44af9ad7e05fb1 120 Gene3D G3DSA:1.10.3830.10 2 119 5.5E-30 T 13-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 67 91 - T 13-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 SUPERFAMILY SSF53623 63 281 1.57E-55 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 61 430 2.6E-128 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 Gene3D G3DSA:3.40.1190.10 61 286 3.4E-61 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 430 28.039 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 Pfam PF02875 Mur ligase family, glutamate ligase domain 283 363 8.7E-22 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 Gene3D G3DSA:3.90.190.20 287 436 2.9E-55 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 Pfam PF08245 Mur ligase middle domain 69 261 2.7E-41 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 SJPD1_2410 843ddcc85d905ac8a13adfd96c11e4d8 437 SUPERFAMILY SSF53244 283 433 8.24E-46 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 SJPD1_0390 7df2814644f1989f0f4ea5c84ef2c6ba 246 Pfam PF09681 N-terminal phage replisome organiser (Phage_rep_org_N) 8 123 3.0E-31 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain SJPD1_0390 7df2814644f1989f0f4ea5c84ef2c6ba 246 TIGRFAM TIGR01714 phage_rep_org_N: phage replisome organizer, putative, N-terminal region 8 122 3.3E-34 T 13-10-2018 IPR010056 Phage replisome organiser, N-terminal domain SJPD1_2556 07da0b39983a39304ed8237bacf7b260 299 Gene3D G3DSA:1.20.950.20 85 298 8.5E-54 T 13-10-2018 SJPD1_2556 07da0b39983a39304ed8237bacf7b260 299 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 91 293 3.1E-63 T 13-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 SJPD1_2556 07da0b39983a39304ed8237bacf7b260 299 SUPERFAMILY SSF81342 88 297 3.37E-38 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_2556 07da0b39983a39304ed8237bacf7b260 299 Pfam PF01292 Prokaryotic cytochrome b561 94 275 7.7E-17 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 567 585 8.3E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 564 8.3E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 536 550 8.3E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 PRINTS PR00344 Bacterial sensor protein C-terminal signature 591 604 8.3E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 SUPERFAMILY SSF47384 387 458 1.61E-8 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 Gene3D G3DSA:1.10.287.130 379 460 3.0E-13 T 13-10-2018 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 SUPERFAMILY SSF55874 461 603 2.23E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 Pfam PF07695 7TM diverse intracellular signalling 170 345 1.2E-9 T 13-10-2018 IPR011623 7TM-DISM receptor, extracellular domain, type 1 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 SMART SM00387 501 607 9.4E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 Gene3D G3DSA:3.30.565.10 463 605 1.2E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 SMART SM00388 392 462 2.9E-4 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_1507 5e5d3f2885335a6ab5e732282252af95 607 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 504 603 2.8E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0129 5cd5d33e6d9edfc187079639565ee71c 444 Gene3D G3DSA:1.10.760.10 351 444 2.0E-5 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0129 5cd5d33e6d9edfc187079639565ee71c 444 SUPERFAMILY SSF46626 263 443 3.49E-9 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0592 525f57daa8674de53fe9042c4cb7ebd3 452 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 4 451 79.483 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_0592 525f57daa8674de53fe9042c4cb7ebd3 452 Gene3D G3DSA:3.90.1300.10 2 451 2.6E-159 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_0592 525f57daa8674de53fe9042c4cb7ebd3 452 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 2 450 1.6E-167 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_0592 525f57daa8674de53fe9042c4cb7ebd3 452 ProSitePatterns PS00571 Amidases signature. 129 160 - T 13-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 SJPD1_0592 525f57daa8674de53fe9042c4cb7ebd3 452 Pfam PF01425 Amidase 48 440 2.8E-135 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_0592 525f57daa8674de53fe9042c4cb7ebd3 452 SUPERFAMILY SSF75304 26 450 1.26E-133 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 SJPD1_0471 f0445303f361459b26cf305d795587c9 404 Gene3D G3DSA:3.30.450.20 251 377 8.7E-21 T 13-10-2018 SJPD1_0471 f0445303f361459b26cf305d795587c9 404 Pfam PF16448 LapD/MoxY periplasmic domain 42 156 2.6E-9 T 13-10-2018 IPR032244 LapD/MoxY, periplasmic domain SJPD1_0471 f0445303f361459b26cf305d795587c9 404 Pfam PF00989 PAS fold 251 364 2.3E-12 T 13-10-2018 IPR013767 PAS fold GO:0006355 SJPD1_0471 f0445303f361459b26cf305d795587c9 404 SMART SM00091 248 314 1.2E-10 T 13-10-2018 IPR000014 PAS domain SJPD1_0471 f0445303f361459b26cf305d795587c9 404 SUPERFAMILY SSF55785 235 364 2.44E-19 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0471 f0445303f361459b26cf305d795587c9 404 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 245 373 3.0E-17 T 13-10-2018 IPR000014 PAS domain SJPD1_1898 43844d2b1af0a59898b2c39e3d516d00 144 Pfam PF13673 Acetyltransferase (GNAT) domain 24 123 8.6E-9 T 13-10-2018 IPR000182 GNAT domain SJPD1_1898 43844d2b1af0a59898b2c39e3d516d00 144 SUPERFAMILY SSF55729 1 119 2.4E-19 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_1898 43844d2b1af0a59898b2c39e3d516d00 144 Gene3D G3DSA:3.40.630.30 2 139 3.5E-22 T 13-10-2018 SJPD1_0504 b1a76fdb7fc5166d7a926594370ac88d 272 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 151 163 - T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 SJPD1_0504 b1a76fdb7fc5166d7a926594370ac88d 272 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 269 18.559 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 SJPD1_0504 b1a76fdb7fc5166d7a926594370ac88d 272 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 2 268 9.2E-73 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 SJPD1_0504 b1a76fdb7fc5166d7a926594370ac88d 272 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 262 2.6E-67 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 SJPD1_0270 af04bcc2dc575d07946816418b8eb934 303 SUPERFAMILY SSF53300 81 258 1.13E-32 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_0270 af04bcc2dc575d07946816418b8eb934 303 Pfam PF00092 von Willebrand factor type A domain 82 256 5.1E-23 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_0270 af04bcc2dc575d07946816418b8eb934 303 Gene3D G3DSA:3.40.50.410 81 263 1.0E-45 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_0270 af04bcc2dc575d07946816418b8eb934 303 SMART SM00327 79 262 8.2E-17 T 13-10-2018 IPR002035 von Willebrand factor, type A SJPD1_2339 8307fc31beaa1a4c4de1db5012d69948 226 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 8 215 3.6E-75 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 SJPD1_2339 8307fc31beaa1a4c4de1db5012d69948 226 PIRSF PIRSF006293 4 225 2.3E-73 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 SJPD1_2339 8307fc31beaa1a4c4de1db5012d69948 226 Gene3D G3DSA:3.40.50.620 5 225 1.7E-70 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold SJPD1_2339 8307fc31beaa1a4c4de1db5012d69948 226 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 6 226 48.487 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 SJPD1_2339 8307fc31beaa1a4c4de1db5012d69948 226 SUPERFAMILY SSF52402 7 222 3.97E-60 T 13-10-2018 SJPD1_2339 8307fc31beaa1a4c4de1db5012d69948 226 Pfam PF06508 Queuosine biosynthesis protein QueC 7 222 1.6E-76 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 SJPD1_1257 c3c99167e3eeed96e70d833e522569bc 410 Gene3D G3DSA:3.20.70.20 2 410 8.5E-85 T 13-10-2018 SJPD1_1257 c3c99167e3eeed96e70d833e522569bc 410 SUPERFAMILY SSF51998 6 407 2.65E-89 T 13-10-2018 SJPD1_1257 c3c99167e3eeed96e70d833e522569bc 410 Pfam PF05167 Uncharacterised ACR (DUF711) 9 396 7.9E-104 T 13-10-2018 IPR007841 Uncharacterised protein family UPF0210 SJPD1_0311 f1ed064893e51034dc644d8665cae302 322 Pfam PF03916 Polysulphide reductase, NrfD 8 320 8.9E-71 T 13-10-2018 IPR005614 NrfD family SJPD1_0311 f1ed064893e51034dc644d8665cae302 322 Gene3D G3DSA:1.20.1630.10 9 230 2.3E-16 T 13-10-2018 SJPD1_2151 f8781d3eeeb5be1764460ffb18de6647 117 ProDom PD021295 MATURATION HYDROGENLYASE FORMATE HYCH LYASE HYCE PROCESSING OXIDOREDUCTASE J COMPONENT 2 104 5.0E-5 T 13-10-2018 IPR010005 Formate hydrogenlyase maturation HycH SJPD1_2151 f8781d3eeeb5be1764460ffb18de6647 117 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 2 91 1.0E-11 T 13-10-2018 IPR010005 Formate hydrogenlyase maturation HycH SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 246 5.4E-57 T 13-10-2018 SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 182 0.0018 T 13-10-2018 SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 9.0E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 9.0E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 9.0E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 9.0E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 9.0E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 9.0E-35 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 SUPERFAMILY SSF51735 6 246 4.77E-76 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0664 6eb48e05b5b440ffd5d3cb50efcf5ca4 250 Gene3D G3DSA:3.40.50.720 1 249 1.0E-77 T 13-10-2018 SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 SMART SM00650 27 198 4.9E-55 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 11 277 40.733 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 42 68 - T 13-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 Gene3D G3DSA:3.40.50.150 4 200 9.7E-54 T 13-10-2018 SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 12 271 4.3E-64 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 Pfam PF00398 Ribosomal RNA adenine dimethylase 13 244 1.0E-38 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm SJPD1_0095 f6abc87697aec3d9832a95ea6bbbcfbf 291 SUPERFAMILY SSF53335 11 276 1.73E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_1065 72a3f59dc77595b4aa85bec2daf8b603 107 SUPERFAMILY SSF52172 24 100 1.28E-18 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_1065 72a3f59dc77595b4aa85bec2daf8b603 107 Pfam PF00072 Response regulator receiver domain 28 100 4.0E-14 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_1065 72a3f59dc77595b4aa85bec2daf8b603 107 Gene3D G3DSA:3.40.50.2300 23 104 3.9E-17 T 13-10-2018 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 313 3.1E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 Gene3D G3DSA:1.10.287.130 201 318 4.4E-20 T 13-10-2018 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 367 464 1.8E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 SMART SM00304 197 250 0.0028 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 Gene3D G3DSA:3.30.565.10 321 465 1.8E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 SMART SM00387 362 465 4.5E-27 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 SMART SM00388 251 317 6.2E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 465 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 409 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 423 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 SUPERFAMILY SSF55874 307 465 1.15E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_2485 7f631a93ee5f0b4d0d5f4691a8b2f76f 465 SUPERFAMILY SSF47384 234 315 3.53E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0782 622652abc9830f8e6b0d44982858c7a0 426 Pfam PF00266 Aminotransferase class-V 16 406 1.6E-47 T 13-10-2018 IPR000192 Aminotransferase class V domain SJPD1_0782 622652abc9830f8e6b0d44982858c7a0 426 Gene3D G3DSA:3.40.640.10 23 267 2.7E-37 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_0782 622652abc9830f8e6b0d44982858c7a0 426 SUPERFAMILY SSF53383 4 417 4.26E-70 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0782 622652abc9830f8e6b0d44982858c7a0 426 Gene3D G3DSA:3.90.1150.10 278 420 7.4E-30 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_0215 91be4db28361f64b15a75ea991988cc6 154 Gene3D G3DSA:3.40.30.10 2 152 3.5E-49 T 13-10-2018 SJPD1_0215 91be4db28361f64b15a75ea991988cc6 154 Pfam PF00578 AhpC/TSA family 4 131 1.3E-39 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 SJPD1_0215 91be4db28361f64b15a75ea991988cc6 154 PIRSF PIRSF000239 1 153 1.1E-27 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 SJPD1_0215 91be4db28361f64b15a75ea991988cc6 154 SUPERFAMILY SSF52833 1 153 5.18E-53 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_2042 3d3083e033d9ea1e044dd83995f83392 239 Gene3D G3DSA:3.40.1390.30 98 204 2.9E-51 T 13-10-2018 SJPD1_2042 3d3083e033d9ea1e044dd83995f83392 239 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 223 1.5E-56 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 SJPD1_2042 3d3083e033d9ea1e044dd83995f83392 239 SUPERFAMILY SSF102705 1 237 6.28E-62 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily SJPD1_2042 3d3083e033d9ea1e044dd83995f83392 239 Gene3D G3DSA:3.40.1390.30 6 213 2.9E-51 T 13-10-2018 SJPD1_2042 3d3083e033d9ea1e044dd83995f83392 239 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 221 3.2E-43 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 SJPD1_1020 0374021c97a1aa02f02f87f1a17ccc05 481 Gene3D G3DSA:3.40.605.10 8 467 3.5E-165 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_1020 0374021c97a1aa02f02f87f1a17ccc05 481 Gene3D G3DSA:3.40.309.10 252 439 3.5E-165 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 SJPD1_1020 0374021c97a1aa02f02f87f1a17ccc05 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 SJPD1_1020 0374021c97a1aa02f02f87f1a17ccc05 481 SUPERFAMILY SSF53720 5 471 1.13E-157 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 SJPD1_1020 0374021c97a1aa02f02f87f1a17ccc05 481 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 275 286 - T 13-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 SJPD1_1020 0374021c97a1aa02f02f87f1a17ccc05 481 Pfam PF00171 Aldehyde dehydrogenase family 16 469 5.2E-163 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 SJPD1_0882 1a55ad3072ac176dcb4be0a793be321d 322 Pfam PF03595 Voltage-dependent anion channel 15 310 2.2E-52 T 13-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 SJPD1_0882 1a55ad3072ac176dcb4be0a793be321d 322 Gene3D G3DSA:1.50.10.150 9 321 2.4E-87 T 13-10-2018 IPR038665 Voltage-dependent anion channel superfamily SJPD1_0030 f5ca49a843922111fd0bb1f0b9674204 329 PIRSF PIRSF004869 1 304 4.2E-92 T 13-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted SJPD1_0030 f5ca49a843922111fd0bb1f0b9674204 329 Pfam PF04055 Radical SAM superfamily 76 230 1.2E-20 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_0030 f5ca49a843922111fd0bb1f0b9674204 329 SMART SM00729 68 268 0.0072 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 SJPD1_0030 f5ca49a843922111fd0bb1f0b9674204 329 TIGRFAM TIGR04337 AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme 3 328 4.5E-106 T 13-10-2018 IPR027596 AmmeMemoRadiSam system radical SAM enzyme SJPD1_0030 f5ca49a843922111fd0bb1f0b9674204 329 SUPERFAMILY SSF102114 46 307 5.49E-32 T 13-10-2018 SJPD1_0030 f5ca49a843922111fd0bb1f0b9674204 329 Gene3D G3DSA:3.20.20.70 63 279 3.5E-36 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0800 be3eaa36a7cd7a38a325ffca45b19317 366 Gene3D G3DSA:3.20.20.70 9 365 7.1E-64 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0800 be3eaa36a7cd7a38a325ffca45b19317 366 SUPERFAMILY SSF51412 8 358 4.73E-48 T 13-10-2018 SJPD1_0800 be3eaa36a7cd7a38a325ffca45b19317 366 Pfam PF03060 Nitronate monooxygenase 6 361 8.2E-84 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 SJPD1_0867 456cdbe35042297bd610637bd8425ef7 293 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 248 254 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SJPD1_0867 456cdbe35042297bd610637bd8425ef7 293 Gene3D G3DSA:3.40.50.150 170 290 3.8E-15 T 13-10-2018 SJPD1_0867 456cdbe35042297bd610637bd8425ef7 293 SUPERFAMILY SSF53335 108 286 2.24E-16 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0867 456cdbe35042297bd610637bd8425ef7 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 170 251 1.4E-7 T 13-10-2018 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 Hamap MF_00268 Protein RecA [recA]. 1 306 46.439 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 Gene3D G3DSA:3.40.50.300 2 244 8.0E-82 T 13-10-2018 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 SUPERFAMILY SSF52540 4 244 5.68E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 SUPERFAMILY SSF54752 245 302 7.72E-21 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 Pfam PF00154 recA bacterial DNA recombination protein 2 245 8.9E-128 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 Gene3D G3DSA:3.30.250.10 245 318 1.9E-26 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 SMART SM00382 33 205 1.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 2 301 1.6E-159 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 ProSitePatterns PS00321 recA signature. 190 198 - T 13-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 PRINTS PR00142 RecA protein signature 187 215 4.0E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 PRINTS PR00142 RecA protein signature 103 132 4.0E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 PRINTS PR00142 RecA protein signature 69 98 4.0E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 PRINTS PR00142 RecA protein signature 141 170 4.0E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 PRINTS PR00142 RecA protein signature 220 249 4.0E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_2810 ccf96b93b4ccbc1f7d0a892ac0237425 321 PRINTS PR00142 RecA protein signature 274 291 4.0E-84 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 SJPD1_1572 1a6e2e151e677117cb9d6fba077b776b 165 Gene3D G3DSA:2.40.10.330 70 123 1.8E-42 T 13-10-2018 SJPD1_1572 1a6e2e151e677117cb9d6fba077b776b 165 SUPERFAMILY SSF54534 2 142 6.68E-26 T 13-10-2018 SJPD1_1572 1a6e2e151e677117cb9d6fba077b776b 165 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 74 6.3E-5 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain SJPD1_1572 1a6e2e151e677117cb9d6fba077b776b 165 Gene3D G3DSA:3.10.50.40 3 151 1.8E-42 T 13-10-2018 SJPD1_0462 763e453da1de7a02ea6dca18a917bce8 427 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0462 763e453da1de7a02ea6dca18a917bce8 427 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 228 241 - T 13-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0462 763e453da1de7a02ea6dca18a917bce8 427 Pfam PF00146 NADH dehydrogenase 13 318 2.0E-88 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0462 763e453da1de7a02ea6dca18a917bce8 427 Pfam PF00146 NADH dehydrogenase 340 419 1.5E-16 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0462 763e453da1de7a02ea6dca18a917bce8 427 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 5 425 22.437 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1721 dc8544a79002d55d6fc022c9d5edf028 267 SUPERFAMILY SSF46785 5 83 2.05E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1721 dc8544a79002d55d6fc022c9d5edf028 267 Gene3D G3DSA:1.10.10.10 1 84 5.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 317 338 - T 13-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 Pfam PF00171 Aldehyde dehydrogenase family 2 276 5.8E-18 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 Gene3D G3DSA:3.40.309.10 221 368 1.3E-163 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 PIRSF PIRSF000151 1 411 1.7E-174 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 8 400 1.5E-149 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 Gene3D G3DSA:3.40.605.10 13 405 1.3E-163 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 410 39.421 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 SJPD1_1593 a2c82febd0925e700d310c5c96930e50 411 SUPERFAMILY SSF53720 2 410 6.68E-112 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 SJPD1_1458 a0e59c81f3aad9587a7cc5dff61ec28e 89 Pfam PF00708 Acylphosphatase 4 87 4.5E-20 T 13-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 SJPD1_1458 a0e59c81f3aad9587a7cc5dff61ec28e 89 SUPERFAMILY SSF54975 3 88 1.02E-20 T 13-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 SJPD1_1458 a0e59c81f3aad9587a7cc5dff61ec28e 89 Gene3D G3DSA:3.30.70.100 1 89 1.9E-22 T 13-10-2018 SJPD1_1458 a0e59c81f3aad9587a7cc5dff61ec28e 89 ProSitePatterns PS00150 Acylphosphatase signature 1. 8 18 - T 13-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 SJPD1_0716 cf4dd0669c9344e1f34191b6ab536507 714 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 16 701 13.616 T 13-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 SJPD1_0716 cf4dd0669c9344e1f34191b6ab536507 714 Pfam PF04453 Organic solvent tolerance protein 311 453 2.5E-6 T 13-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 SJPD1_0242 afd7a646f4a3a53bb0bafc937f0ef002 206 Gene3D G3DSA:3.40.50.1000 1 206 5.6E-63 T 13-10-2018 IPR023214 HAD superfamily SJPD1_0242 afd7a646f4a3a53bb0bafc937f0ef002 206 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 172 1.5E-26 T 13-10-2018 SJPD1_0242 afd7a646f4a3a53bb0bafc937f0ef002 206 SUPERFAMILY SSF56784 2 206 4.14E-46 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_0242 afd7a646f4a3a53bb0bafc937f0ef002 206 Pfam PF12710 haloacid dehalogenase-like hydrolase 5 172 5.7E-19 T 13-10-2018 SJPD1_0242 afd7a646f4a3a53bb0bafc937f0ef002 206 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 2 206 3.1E-72 T 13-10-2018 SJPD1_2425 a17abd81d2840faa8088cb6bd341e43c 131 Gene3D G3DSA:3.30.1370.30 1 72 9.2E-21 T 13-10-2018 SJPD1_2425 a17abd81d2840faa8088cb6bd341e43c 131 Gene3D G3DSA:3.30.1490.10 74 131 5.9E-23 T 13-10-2018 SJPD1_2425 a17abd81d2840faa8088cb6bd341e43c 131 ProSitePatterns PS00053 Ribosomal protein S8 signature. 101 118 - T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2425 a17abd81d2840faa8088cb6bd341e43c 131 SUPERFAMILY SSF56047 1 131 4.19E-40 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2425 a17abd81d2840faa8088cb6bd341e43c 131 Pfam PF00410 Ribosomal protein S8 4 131 4.6E-44 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2425 a17abd81d2840faa8088cb6bd341e43c 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 1 131 26.946 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PIRSF PIRSF000126 1 238 2.0E-50 T 13-10-2018 SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.7E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 3.1E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 3.1E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 3.1E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 3.1E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 Pfam PF00106 short chain dehydrogenase 3 189 5.7E-52 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 SUPERFAMILY SSF51735 3 233 1.32E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 13-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 SJPD1_0420 2f161b9b071c6ae7fd3110869634f6e9 250 Gene3D G3DSA:3.40.50.720 1 243 3.7E-62 T 13-10-2018 SJPD1_2765 1ff3e4b6de0712ca48aa6987d8abbd19 407 Gene3D G3DSA:3.40.640.10 1 272 9.7E-77 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2765 1ff3e4b6de0712ca48aa6987d8abbd19 407 PIRSF PIRSF001434 1 407 5.0E-114 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 SJPD1_2765 1ff3e4b6de0712ca48aa6987d8abbd19 407 Gene3D G3DSA:3.90.1150.10 276 406 1.6E-38 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2765 1ff3e4b6de0712ca48aa6987d8abbd19 407 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 405 2.3E-106 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 SJPD1_2765 1ff3e4b6de0712ca48aa6987d8abbd19 407 SUPERFAMILY SSF53383 1 406 3.16E-96 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0861 75dd6dc142d17d482c2d5fcd519f39b6 362 Gene3D G3DSA:3.40.50.300 1 211 5.2E-34 T 13-10-2018 SJPD1_0861 75dd6dc142d17d482c2d5fcd519f39b6 362 SUPERFAMILY SSF52540 3 208 7.87E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0861 75dd6dc142d17d482c2d5fcd519f39b6 362 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 188 1.6E-25 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 SMART SM00347 23 126 3.0E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 Gene3D G3DSA:1.10.10.10 4 142 6.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 Pfam PF01047 MarR family 36 89 1.5E-11 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 67 82 1.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 50 66 1.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 116 136 1.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 86 102 1.5E-10 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 SJPD1_0665 9bd6845c8585cd06b10530b30fdd9c19 144 SUPERFAMILY SSF46785 4 141 1.86E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1260 1fa83610fe2a25b2240268f7b8d9afda 357 Gene3D G3DSA:3.30.1330.60 171 348 1.7E-20 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_1260 1fa83610fe2a25b2240268f7b8d9afda 357 Pfam PF00691 OmpA family 224 331 2.1E-12 T 13-10-2018 IPR006665 OmpA-like domain SJPD1_1260 1fa83610fe2a25b2240268f7b8d9afda 357 SUPERFAMILY SSF103088 212 338 1.24E-19 T 13-10-2018 IPR036737 OmpA-like domain superfamily SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 104 118 - T 13-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 SUPERFAMILY SSF53686 11 477 6.4E-128 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 Gene3D G3DSA:3.40.50.1100 110 230 1.5E-110 T 13-10-2018 SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 Gene3D G3DSA:3.40.50.1100 100 446 1.5E-110 T 13-10-2018 SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 89 409 6.1E-15 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 Pfam PF14821 Threonine synthase N terminus 2 78 1.6E-12 T 13-10-2018 IPR029144 Threonine synthase, N-terminal SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 TIGRFAM TIGR00260 thrC: threonine synthase 81 442 1.2E-81 T 13-10-2018 IPR004450 Threonine synthase-like SJPD1_1713 095d1b98c2db16790be4189c9320af0d 495 Gene3D G3DSA:3.90.1380.10 1 89 1.1E-11 T 13-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily SJPD1_1984 910fd5662086485f3a455e8ee5c5fc5b 166 SUPERFAMILY SSF54523 5 52 3.92E-12 T 13-10-2018 SJPD1_1984 910fd5662086485f3a455e8ee5c5fc5b 166 Gene3D G3DSA:3.30.700.10 5 162 6.6E-13 T 13-10-2018 SJPD1_1984 910fd5662086485f3a455e8ee5c5fc5b 166 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 2 25 1.9E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site SJPD1_1984 910fd5662086485f3a455e8ee5c5fc5b 166 Pfam PF07963 Prokaryotic N-terminal methylation motif 2 25 1.2E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site SJPD1_1132 ccea8778a9c1df58b4d1014893bb5973 142 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 4 141 7.2E-55 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 SJPD1_1132 ccea8778a9c1df58b4d1014893bb5973 142 PIRSF PIRSF005384 1 142 7.4E-54 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 SJPD1_1132 ccea8778a9c1df58b4d1014893bb5973 142 Gene3D G3DSA:3.40.1400.10 1 142 4.3E-56 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 SJPD1_1132 ccea8778a9c1df58b4d1014893bb5973 142 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 141 2.3E-56 T 13-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 SJPD1_1132 ccea8778a9c1df58b4d1014893bb5973 142 Pfam PF02502 Ribose/Galactose Isomerase 4 140 2.4E-53 T 13-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 SJPD1_1132 ccea8778a9c1df58b4d1014893bb5973 142 SUPERFAMILY SSF89623 2 141 1.44E-53 T 13-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 SJPD1_1467 b2510fc24dec76f19eb7293ca5748249 293 Gene3D G3DSA:1.25.40.10 180 288 1.2E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1467 b2510fc24dec76f19eb7293ca5748249 293 SUPERFAMILY SSF48452 207 276 3.8E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1467 b2510fc24dec76f19eb7293ca5748249 293 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 206 269 4.8E-7 T 13-10-2018 SJPD1_2812 11b9420995d46641bef57dd3b5bebecc 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 38 53 8.7E-19 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 SJPD1_2812 11b9420995d46641bef57dd3b5bebecc 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 53 75 8.7E-19 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 SJPD1_2812 11b9420995d46641bef57dd3b5bebecc 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 17 38 8.7E-19 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 SJPD1_2812 11b9420995d46641bef57dd3b5bebecc 88 PIRSF PIRSF004669 1 87 4.2E-28 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 SJPD1_2812 11b9420995d46641bef57dd3b5bebecc 88 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 3 86 3.6E-29 T 13-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 SJPD1_2812 11b9420995d46641bef57dd3b5bebecc 88 Pfam PF01313 Bacterial export proteins, family 3 6 76 1.2E-27 T 13-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 SJPD1_0153 49bb2d7c40ad0d8bbc0718c27367c63a 339 Gene3D G3DSA:3.20.20.100 1 339 2.3E-107 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_0153 49bb2d7c40ad0d8bbc0718c27367c63a 339 SUPERFAMILY SSF51430 1 335 2.49E-93 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_0153 49bb2d7c40ad0d8bbc0718c27367c63a 339 Pfam PF00248 Aldo/keto reductase family 15 330 7.6E-70 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_1075 ee62b18fb685fdeb4a743ae115778ee8 176 PIRSF PIRSF004638 1 145 3.4E-39 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_1075 ee62b18fb685fdeb4a743ae115778ee8 176 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 141 3.9E-43 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_0195 8a3a665fcb21cc1bfb463fb022b580b2 222 Pfam PF04452 RNA methyltransferase 17 220 2.8E-42 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 SJPD1_0195 8a3a665fcb21cc1bfb463fb022b580b2 222 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 220 4.1E-49 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 SJPD1_0195 8a3a665fcb21cc1bfb463fb022b580b2 222 SUPERFAMILY SSF75217 76 221 9.81E-30 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases SJPD1_0195 8a3a665fcb21cc1bfb463fb022b580b2 222 Gene3D G3DSA:3.40.1280.10 3 222 2.0E-33 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal SJPD1_0195 8a3a665fcb21cc1bfb463fb022b580b2 222 PIRSF PIRSF015601 1 222 1.4E-42 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 177 255 2.0E-23 T 13-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 255 1.7E-102 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 Gene3D G3DSA:2.160.10.10 1 194 4.7E-51 T 13-10-2018 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 Gene3D G3DSA:1.20.1180.10 195 264 7.0E-20 T 13-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 150 178 - T 13-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 PIRSF PIRSF000456 1 264 6.3E-101 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 SUPERFAMILY SSF51161 3 255 9.05E-67 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 106 140 1.0E-10 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 32 65 4.0E-5 T 13-10-2018 IPR001451 Hexapeptide repeat SJPD1_0222 a9d009e35197f18f4cdd3b02dbc623d5 264 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 257 42.552 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 SJPD1_2657 c838372a6a3ef01485253a804201524a 88 SUPERFAMILY SSF101744 3 78 2.46E-7 T 13-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 SJPD1_0668 28b014a3f24c7f0c2c83830c47596886 622 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 135 589 97.904 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 SJPD1_0668 28b014a3f24c7f0c2c83830c47596886 622 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 135 588 2.6E-216 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 SJPD1_0668 28b014a3f24c7f0c2c83830c47596886 622 Pfam PF01964 Radical SAM ThiC family 136 584 6.6E-199 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 SJPD1_0668 28b014a3f24c7f0c2c83830c47596886 622 Pfam PF13667 ThiC-associated domain 19 96 7.3E-34 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 SJPD1_0668 28b014a3f24c7f0c2c83830c47596886 622 Gene3D G3DSA:3.20.20.540 208 520 2.3E-155 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 SJPD1_2155 eb7eb9f4e856307a19b5d0335a7fc715 75 Pfam PF02597 ThiS family 5 75 3.5E-10 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 SJPD1_2155 eb7eb9f4e856307a19b5d0335a7fc715 75 Gene3D G3DSA:3.10.20.30 1 75 6.6E-8 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_2155 eb7eb9f4e856307a19b5d0335a7fc715 75 SUPERFAMILY SSF54285 3 75 2.43E-10 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp SJPD1_1707 0277da1936c0a44752574811ceb0d7bd 181 Gene3D G3DSA:3.10.129.10 17 167 3.7E-42 T 13-10-2018 SJPD1_1707 0277da1936c0a44752574811ceb0d7bd 181 SUPERFAMILY SSF54637 51 154 3.1E-15 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 Gene3D G3DSA:1.25.40.10 95 233 8.2E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 SUPERFAMILY SSF48452 23 205 9.29E-14 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 Gene3D G3DSA:1.25.40.10 3 94 1.3E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 Pfam PF13181 Tetratricopeptide repeat 50 81 0.06 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 SMART SM00028 48 81 4.8 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 SMART SM00028 144 177 380.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_2255 67bddefce65d3a5a59667d34910dbecf 234 SMART SM00028 110 143 11.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 247 24.479 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 SUPERFAMILY SSF54506 124 245 3.59E-23 T 13-10-2018 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 SUPERFAMILY SSF54506 1 118 2.79E-30 T 13-10-2018 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 60 74 - T 13-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 Gene3D G3DSA:3.10.310.10 109 234 6.0E-60 T 13-10-2018 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 245 1.1E-56 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 Pfam PF01678 Diaminopimelate epimerase 4 106 6.1E-22 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 Pfam PF01678 Diaminopimelate epimerase 133 229 4.2E-11 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 SJPD1_0106 ff27eb56b9c331d10e5235f7d0c12930 247 Gene3D G3DSA:3.10.310.10 3 242 6.0E-60 T 13-10-2018 SJPD1_1111 1598de954466cfa27f77f12c37e36f3d 216 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 43 196 9.0E-21 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain SJPD1_1111 1598de954466cfa27f77f12c37e36f3d 216 Gene3D G3DSA:3.40.50.1110 37 210 6.2E-47 T 13-10-2018 IPR036514 SGNH hydrolase superfamily SJPD1_1111 1598de954466cfa27f77f12c37e36f3d 216 SUPERFAMILY SSF52266 39 206 1.18E-39 T 13-10-2018 SJPD1_1261 c54a05b0b34aba90eba7e8d6e96887ed 386 Pfam PF01618 MotA/TolQ/ExbB proton channel family 124 211 6.0E-7 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel SJPD1_1384 e7915244d0c8ffd8bea890fd70309693 410 SUPERFAMILY SSF51338 1 408 1.53E-24 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 SJPD1_1384 e7915244d0c8ffd8bea890fd70309693 410 Gene3D G3DSA:3.20.20.140 1 410 8.2E-86 T 13-10-2018 SJPD1_1384 e7915244d0c8ffd8bea890fd70309693 410 Pfam PF01979 Amidohydrolase family 272 406 1.1E-14 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 SJPD1_1384 e7915244d0c8ffd8bea890fd70309693 410 SUPERFAMILY SSF51556 52 361 1.09E-62 T 13-10-2018 IPR032466 Metal-dependent hydrolase SJPD1_1791 a0d59bed52dc7bff7f51526552690afb 434 Pfam PF02646 RmuC family 110 406 2.6E-95 T 13-10-2018 IPR003798 DNA recombination RmuC SJPD1_1668 cdd218a8072c8e2375475ec971cefc2f 153 Gene3D G3DSA:1.20.120.450 1 153 1.2E-15 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes SJPD1_1668 cdd218a8072c8e2375475ec971cefc2f 153 SUPERFAMILY SSF109854 32 151 2.08E-14 T 13-10-2018 IPR034660 DinB/YfiT-like putative metalloenzymes SJPD1_1304 2357eee17a6b75203a2dea0e20dabf16 137 Gene3D G3DSA:3.40.50.12280 3 137 3.0E-35 T 13-10-2018 SJPD1_1304 2357eee17a6b75203a2dea0e20dabf16 137 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 15 126 5.7E-22 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1304 2357eee17a6b75203a2dea0e20dabf16 137 SUPERFAMILY SSF56770 5 134 6.8E-38 T 13-10-2018 SJPD1_0174 cdc433ce475968d081aca4cc1e58879e 79 Pfam PF16514 putative NADH-ubiquinone oxidoreductase chain E 1 73 2.2E-37 T 13-10-2018 IPR032424 Putative NADH-ubiquinone oxidoreductase chain E SJPD1_0174 cdc433ce475968d081aca4cc1e58879e 79 Gene3D G3DSA:3.30.110.40 1 75 2.8E-35 T 13-10-2018 IPR036868 TusA-like domain superfamily SJPD1_0604 a36516b3ecf2b7bde4e9b3c59844f7c2 446 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 5 414 9.6E-27 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 SJPD1_0604 a36516b3ecf2b7bde4e9b3c59844f7c2 446 SUPERFAMILY SSF51905 1 294 5.31E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_0887 b7288c65e5f89890af573da31b0a8cdd 69 Pfam PF14899 Domain of unknown function (DUF4492) 6 66 2.8E-25 T 13-10-2018 IPR027853 Protein of unknown function DUF4492 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 Pfam PF13533 Biotin-lipoyl like 54 102 3.0E-14 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 Gene3D G3DSA:1.10.287.470 117 203 2.6E-8 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 Gene3D G3DSA:2.40.30.170 254 376 9.6E-32 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 Gene3D G3DSA:2.40.50.100 54 88 8.2E-12 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 SUPERFAMILY SSF111369 193 288 3.92E-10 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 SUPERFAMILY SSF111369 50 137 1.2E-10 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 Pfam PF13437 HlyD family secretion protein 240 360 6.9E-13 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 Gene3D G3DSA:1.10.287.470 89 106 8.2E-12 T 13-10-2018 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 66 86 8.3E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 251 272 8.3E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_1819 d3e94fbe4c77c0fb10734e65e3a238dd 376 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 357 372 8.3E-6 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 SJPD1_1606 b0a439652e6dc9926e8c6425d55558e7 311 Gene3D G3DSA:3.40.718.10 1 306 1.1E-101 T 13-10-2018 SJPD1_1606 b0a439652e6dc9926e8c6425d55558e7 311 SUPERFAMILY SSF53659 2 304 5.76E-80 T 13-10-2018 SJPD1_1606 b0a439652e6dc9926e8c6425d55558e7 311 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 29 299 7.0E-86 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 SJPD1_1606 b0a439652e6dc9926e8c6425d55558e7 311 Hamap MF_02086 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 300 46.76 T 13-10-2018 IPR037539 4-hydroxythreonine-4-phosphate dehydrogenase, epsilonproteobacteria KEGG: 00750+1.1.1.262 SJPD1_1943 7d56c50e422eaa704d70790a7ecd799b 227 Gene3D G3DSA:3.40.50.360 1 204 2.7E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1943 7d56c50e422eaa704d70790a7ecd799b 227 SUPERFAMILY SSF52218 1 213 1.86E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1943 7d56c50e422eaa704d70790a7ecd799b 227 Pfam PF03358 NADPH-dependent FMN reductase 1 107 6.1E-25 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SJPD1_0213 fea9ae721a8029ae3e2909ddd3377436 304 SUPERFAMILY SSF56752 3 301 5.76E-94 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 SJPD1_0213 fea9ae721a8029ae3e2909ddd3377436 304 Gene3D G3DSA:3.20.10.10 128 293 3.1E-51 T 13-10-2018 SJPD1_0213 fea9ae721a8029ae3e2909ddd3377436 304 Pfam PF01063 Amino-transferase class IV 33 265 3.1E-42 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 SJPD1_0213 fea9ae721a8029ae3e2909ddd3377436 304 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 8 304 7.7E-129 T 13-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 SJPD1_0213 fea9ae721a8029ae3e2909ddd3377436 304 Gene3D G3DSA:3.30.470.10 1 127 1.1E-40 T 13-10-2018 SJPD1_1640 ac04f60bf382dfa6665bae9e333eff7a 419 Pfam PF09861 Domain of unknown function (DUF2088) 7 205 9.0E-64 T 13-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 SJPD1_1640 ac04f60bf382dfa6665bae9e333eff7a 419 Gene3D G3DSA:3.40.50.11440 30 265 1.7E-127 T 13-10-2018 SJPD1_1640 ac04f60bf382dfa6665bae9e333eff7a 419 Gene3D G3DSA:3.90.226.30 6 409 1.7E-127 T 13-10-2018 SJPD1_1669 52482f55880b3bd6530555bcae98c71b 223 Gene3D G3DSA:3.40.30.10 2 213 3.0E-62 T 13-10-2018 SJPD1_1669 52482f55880b3bd6530555bcae98c71b 223 SUPERFAMILY SSF52833 6 217 1.16E-42 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1669 52482f55880b3bd6530555bcae98c71b 223 Pfam PF01323 DSBA-like thioredoxin domain 9 210 1.3E-29 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 SJPD1_1332 c1b1613d4c8b8074dd6cd1b214be5fca 171 Gene3D G3DSA:1.20.1260.10 1 169 2.0E-55 T 13-10-2018 IPR012347 Ferritin-like SJPD1_1332 c1b1613d4c8b8074dd6cd1b214be5fca 171 PIRSF PIRSF018063 1 163 6.5E-55 T 13-10-2018 IPR014490 DNA-binding protein from starved cells-like SJPD1_1332 c1b1613d4c8b8074dd6cd1b214be5fca 171 SUPERFAMILY SSF47240 14 160 7.44E-34 T 13-10-2018 IPR009078 Ferritin-like superfamily SJPD1_1332 c1b1613d4c8b8074dd6cd1b214be5fca 171 Pfam PF00210 Ferritin-like domain 19 159 7.4E-30 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PIRSF PIRSF000513 5 265 1.9E-84 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 13 258 30.995 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 Gene3D G3DSA:3.40.1190.20 2 267 1.8E-95 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 120 134 1.3E-36 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 19 26 1.3E-36 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 63 71 1.3E-36 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 164 181 1.3E-36 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 89 106 1.3E-36 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 32 53 1.3E-36 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 12 253 2.6E-81 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1331 27a48052f892f52791647a28f91c9734 268 SUPERFAMILY SSF53613 11 263 5.58E-54 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_1331 27a48052f892f52791647a28f91c9734 268 Pfam PF02110 Hydroxyethylthiazole kinase family 12 253 3.6E-79 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_0607 d72eb15be06e724cc283b49ab53c5754 151 SUPERFAMILY SSF55729 1 138 6.08E-29 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_0607 d72eb15be06e724cc283b49ab53c5754 151 Gene3D G3DSA:3.40.630.30 1 144 1.8E-32 T 13-10-2018 SJPD1_0607 d72eb15be06e724cc283b49ab53c5754 151 Pfam PF00583 Acetyltransferase (GNAT) family 33 136 5.4E-21 T 13-10-2018 IPR000182 GNAT domain SJPD1_2468 4eaee11dcbbbfed46f0cc9bfa9b8fe7b 375 SUPERFAMILY SSF56935 91 375 8.55E-13 T 13-10-2018 SJPD1_2468 4eaee11dcbbbfed46f0cc9bfa9b8fe7b 375 Pfam PF02521 Putative outer membrane protein 82 349 4.4E-6 T 13-10-2018 IPR003678 Putative outer membrane protein SJPD1_2468 4eaee11dcbbbfed46f0cc9bfa9b8fe7b 375 Gene3D G3DSA:2.40.160.10 43 375 3.4E-11 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_2389 83af7f3087f5e89e1931a7b5a5636af9 71 TIGRFAM TIGR02736 cbb3_Q_epsi: cytochrome c oxidase, cbb3-type, CcoQ subunit 11 64 3.7E-25 T 13-10-2018 IPR014107 Cytochrome c oxidase cbb3-type, CcoQ SJPD1_2389 83af7f3087f5e89e1931a7b5a5636af9 71 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 4 53 5.3E-15 T 13-10-2018 IPR008621 Cbb3-type cytochrome oxidase component SJPD1_0964 4dba3205bd8bfe709808274719081e81 87 Gene3D G3DSA:1.10.260.40 12 86 1.7E-15 T 13-10-2018 SJPD1_0964 4dba3205bd8bfe709808274719081e81 87 Pfam PF01381 Helix-turn-helix 27 77 3.6E-5 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0964 4dba3205bd8bfe709808274719081e81 87 SUPERFAMILY SSF47413 19 83 2.4E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_2572 69e141bd33de25951bb72115414b3d52 340 Pfam PF01497 Periplasmic binding protein 92 280 8.8E-17 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_2572 69e141bd33de25951bb72115414b3d52 340 SUPERFAMILY SSF53807 23 337 7.06E-49 T 13-10-2018 SJPD1_2572 69e141bd33de25951bb72115414b3d52 340 Gene3D G3DSA:3.40.50.1980 183 286 5.8E-67 T 13-10-2018 SJPD1_2572 69e141bd33de25951bb72115414b3d52 340 Gene3D G3DSA:1.20.58.2180 158 333 5.8E-67 T 13-10-2018 SJPD1_2572 69e141bd33de25951bb72115414b3d52 340 Gene3D G3DSA:3.40.50.1980 17 153 4.0E-47 T 13-10-2018 SJPD1_2602 ba6ee7d153b5877f1c6858b019996e5d 239 Pfam PF13098 Thioredoxin-like domain 124 232 1.9E-7 T 13-10-2018 IPR012336 Thioredoxin-like fold SJPD1_2602 ba6ee7d153b5877f1c6858b019996e5d 239 Gene3D G3DSA:3.40.30.10 112 239 1.7E-34 T 13-10-2018 SJPD1_2602 ba6ee7d153b5877f1c6858b019996e5d 239 SUPERFAMILY SSF52833 103 232 2.42E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1893 47169653bf72fbed650f58433ca935a3 262 Pfam PF00005 ABC transporter 19 175 2.0E-23 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_1893 47169653bf72fbed650f58433ca935a3 262 SUPERFAMILY SSF52540 3 240 2.98E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1893 47169653bf72fbed650f58433ca935a3 262 SMART SM00382 28 223 1.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1893 47169653bf72fbed650f58433ca935a3 262 Gene3D G3DSA:3.40.50.300 1 259 8.8E-54 T 13-10-2018 SJPD1_2520 02e814a4b08733427617dc227ae739da 275 Pfam PF01882 Protein of unknown function DUF58 31 111 2.7E-18 T 13-10-2018 IPR002881 Domain of unknown function DUF58 SJPD1_2520 02e814a4b08733427617dc227ae739da 275 SUPERFAMILY SSF53300 68 198 7.11E-5 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_1920 237220548d110428b006c0193f109198 180 PIRSF PIRSF028688 7 175 9.6E-12 T 13-10-2018 IPR014549 Flagellar protein FlgO SJPD1_2442 00e2c80e7eff3d941e2d88716bac33bd 182 SUPERFAMILY SSF53098 2 174 5.92E-53 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_2442 00e2c80e7eff3d941e2d88716bac33bd 182 Gene3D G3DSA:3.30.420.10 1 181 7.7E-61 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_2442 00e2c80e7eff3d941e2d88716bac33bd 182 Pfam PF01351 Ribonuclease HII 3 172 3.2E-28 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain SJPD1_1308 f7e7612c478a3ab1215b5a0a433398c7 191 Gene3D G3DSA:3.40.50.850 1 191 8.0E-39 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 SJPD1_1308 f7e7612c478a3ab1215b5a0a433398c7 191 Pfam PF00857 Isochorismatase family 9 182 3.3E-35 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 SJPD1_1308 f7e7612c478a3ab1215b5a0a433398c7 191 SUPERFAMILY SSF52499 7 188 1.83E-39 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 SJPD1_2509 4b8375f3cafd09e19a179a8cc91676fd 250 Pfam PF01774 UreD urease accessory protein 35 186 2.0E-15 T 13-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 SJPD1_1349 d225b0cbcaf9dbf04f1e90b8a62cc200 278 SUPERFAMILY SSF47781 161 236 5.56E-11 T 13-10-2018 IPR010994 RuvA domain 2-like SJPD1_1349 d225b0cbcaf9dbf04f1e90b8a62cc200 278 Gene3D G3DSA:1.10.150.320 174 233 1.1E-5 T 13-10-2018 SJPD1_2465 0d25fe1abc83dd302344ee0f0c7e94b9 168 SMART SM00271 107 163 2.6E-13 T 13-10-2018 IPR001623 DnaJ domain SJPD1_2465 0d25fe1abc83dd302344ee0f0c7e94b9 168 SUPERFAMILY SSF46565 106 165 1.44E-15 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_2465 0d25fe1abc83dd302344ee0f0c7e94b9 168 PRINTS PR00625 DnaJ domain signature 143 163 4.1E-6 T 13-10-2018 IPR001623 DnaJ domain SJPD1_2465 0d25fe1abc83dd302344ee0f0c7e94b9 168 PRINTS PR00625 DnaJ domain signature 110 128 4.1E-6 T 13-10-2018 IPR001623 DnaJ domain SJPD1_2465 0d25fe1abc83dd302344ee0f0c7e94b9 168 Pfam PF00226 DnaJ domain 108 165 1.2E-15 T 13-10-2018 IPR001623 DnaJ domain SJPD1_2465 0d25fe1abc83dd302344ee0f0c7e94b9 168 Gene3D G3DSA:1.10.287.110 95 167 8.0E-16 T 13-10-2018 IPR036869 Chaperone J-domain superfamily SJPD1_0023 76a6b85801b5fe1b0bbd237d24c91bb9 189 SUPERFAMILY SSF52499 2 182 2.75E-46 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 SJPD1_0023 76a6b85801b5fe1b0bbd237d24c91bb9 189 Pfam PF00857 Isochorismatase family 4 161 2.4E-32 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 SJPD1_0023 76a6b85801b5fe1b0bbd237d24c91bb9 189 Gene3D G3DSA:3.40.50.850 1 189 1.2E-47 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 SJPD1_2381 e1b7ba1192bb140bbe0c7f59f0c74cf7 142 PIRSF PIRSF002181 1 142 7.5E-45 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SJPD1_2381 e1b7ba1192bb140bbe0c7f59f0c74cf7 142 Pfam PF00572 Ribosomal protein L13 16 136 2.8E-51 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SJPD1_2381 e1b7ba1192bb140bbe0c7f59f0c74cf7 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 7 137 6.4E-58 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2381 e1b7ba1192bb140bbe0c7f59f0c74cf7 142 SUPERFAMILY SSF52161 4 138 9.68E-52 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2381 e1b7ba1192bb140bbe0c7f59f0c74cf7 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 16 140 26.425 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 SJPD1_2381 e1b7ba1192bb140bbe0c7f59f0c74cf7 142 Gene3D G3DSA:3.90.1180.10 5 142 5.3E-55 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_1377 78893a22f8ab103fb078ae1099e980f7 68 Pfam PF01361 Tautomerase enzyme 2 61 2.4E-22 T 13-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 SJPD1_1377 78893a22f8ab103fb078ae1099e980f7 68 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 64 7.2E-28 T 13-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 SJPD1_1377 78893a22f8ab103fb078ae1099e980f7 68 Gene3D G3DSA:3.30.429.10 2 66 7.8E-27 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily SJPD1_1377 78893a22f8ab103fb078ae1099e980f7 68 SUPERFAMILY SSF55331 2 64 1.55E-21 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily SJPD1_1864 da99db177c8e6b26e10ff77eb3e368c8 263 Pfam PF00561 alpha/beta hydrolase fold 20 249 4.3E-24 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_1864 da99db177c8e6b26e10ff77eb3e368c8 263 Gene3D G3DSA:3.40.50.1820 2 263 4.0E-58 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1864 da99db177c8e6b26e10ff77eb3e368c8 263 PRINTS PR00412 Epoxide hydrolase signature 204 220 3.2E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 SJPD1_1864 da99db177c8e6b26e10ff77eb3e368c8 263 PRINTS PR00412 Epoxide hydrolase signature 237 259 3.2E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 SJPD1_1864 da99db177c8e6b26e10ff77eb3e368c8 263 PRINTS PR00412 Epoxide hydrolase signature 25 43 3.2E-6 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 SJPD1_1864 da99db177c8e6b26e10ff77eb3e368c8 263 SUPERFAMILY SSF53474 9 260 2.99E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0948 dc823f1dbbcf0090529434901d82a4da 370 SUPERFAMILY SSF56349 81 355 1.77E-32 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_0948 dc823f1dbbcf0090529434901d82a4da 370 Pfam PF00589 Phage integrase family 209 352 1.8E-14 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_0948 dc823f1dbbcf0090529434901d82a4da 370 Gene3D G3DSA:1.10.150.130 77 187 7.7E-10 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_0948 dc823f1dbbcf0090529434901d82a4da 370 Gene3D G3DSA:1.10.443.10 188 366 4.3E-18 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_1643 c2edfadba916ecf9a9d659f184d14d26 469 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 22 468 1.6E-137 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_1643 c2edfadba916ecf9a9d659f184d14d26 469 PIRSF PIRSF002457 1 469 1.1E-131 T 13-10-2018 IPR030676 Citrate carrier CitT-related SJPD1_1643 c2edfadba916ecf9a9d659f184d14d26 469 Pfam PF00939 Sodium:sulfate symporter transmembrane region 3 463 3.7E-143 T 13-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 SJPD1_0239 51a0b69e381ff841e1bcad9acdc5fcc5 164 SUPERFAMILY SSF50341 24 162 2.09E-36 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 SJPD1_0239 51a0b69e381ff841e1bcad9acdc5fcc5 164 Gene3D G3DSA:2.30.30.40 31 154 2.2E-35 T 13-10-2018 SJPD1_0239 51a0b69e381ff841e1bcad9acdc5fcc5 164 Pfam PF01584 CheW-like domain 28 162 1.9E-35 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_0239 51a0b69e381ff841e1bcad9acdc5fcc5 164 SMART SM00260 24 160 1.1E-37 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 SJPD1_0239 51a0b69e381ff841e1bcad9acdc5fcc5 164 Gene3D G3DSA:2.40.50.180 47 155 2.2E-35 T 13-10-2018 SJPD1_2651 523f735bf31ddefd059764c2e5012b74 112 Gene3D G3DSA:3.40.1260.10 1 112 1.1E-41 T 13-10-2018 IPR027396 DsrEFH-like SJPD1_2651 523f735bf31ddefd059764c2e5012b74 112 SUPERFAMILY SSF75169 3 96 3.06E-9 T 13-10-2018 IPR027396 DsrEFH-like SJPD1_1690 387a4476f3864c4d648e77532e10d732 92 Pfam PF09442 Domain of unknown function (DUF2018) 10 92 1.1E-27 T 13-10-2018 IPR018563 Protein of unknown function DUF2018 SJPD1_1690 387a4476f3864c4d648e77532e10d732 92 SUPERFAMILY SSF158752 1 91 7.72E-26 T 13-10-2018 IPR023126 HP0242-like superfamily SJPD1_1690 387a4476f3864c4d648e77532e10d732 92 Gene3D G3DSA:1.10.3350.10 12 92 1.6E-24 T 13-10-2018 IPR023126 HP0242-like superfamily SJPD1_0845 0502ccf9f145e329c53c3f9cf1a436e1 177 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 8 160 1.2E-16 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal SJPD1_0845 0502ccf9f145e329c53c3f9cf1a436e1 177 TIGRFAM TIGR03153 cytochr_NrfH: cytochrome c nitrite reductase, small subunit 13 158 3.4E-52 T 13-10-2018 IPR017571 Cytochrome c nitrite reductase, small subunit GO:0016021|GO:0022900 SJPD1_0845 0502ccf9f145e329c53c3f9cf1a436e1 177 PIRSF PIRSF000013 1 170 8.8E-9 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 SJPD1_0845 0502ccf9f145e329c53c3f9cf1a436e1 177 SUPERFAMILY SSF48695 21 158 3.21E-25 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_0845 0502ccf9f145e329c53c3f9cf1a436e1 177 Gene3D G3DSA:1.10.3820.10 2 170 1.2E-42 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily SJPD1_1762 658670408b8da764528d213f777b8053 134 Gene3D G3DSA:3.40.50.280 1 132 6.9E-27 T 13-10-2018 SJPD1_1762 658670408b8da764528d213f777b8053 134 SUPERFAMILY SSF52242 1 116 3.01E-26 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 SJPD1_1762 658670408b8da764528d213f777b8053 134 Pfam PF02310 B12 binding domain 1 91 7.3E-11 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 SJPD1_2232 154f6b0c52487be975c8d6521124e686 306 Gene3D G3DSA:3.40.50.720 1 283 3.8E-36 T 13-10-2018 SJPD1_2232 154f6b0c52487be975c8d6521124e686 306 SUPERFAMILY SSF51735 1 285 6.23E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2232 154f6b0c52487be975c8d6521124e686 306 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 212 1.0E-25 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 SJPD1_2231 aed04e4382302483c3633aedb8d1d2bc 449 SUPERFAMILY SSF53383 40 441 2.66E-101 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2231 aed04e4382302483c3633aedb8d1d2bc 449 PIRSF PIRSF000390 10 445 1.8E-108 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_2231 aed04e4382302483c3633aedb8d1d2bc 449 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 49 437 2.5E-94 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase SJPD1_2231 aed04e4382302483c3633aedb8d1d2bc 449 Gene3D G3DSA:3.40.640.10 3 310 6.0E-97 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2231 aed04e4382302483c3633aedb8d1d2bc 449 Gene3D G3DSA:3.90.1150.10 312 444 3.6E-48 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2821 12b1452c58dbdc84a9ef1893597f750d 374 SUPERFAMILY SSF56300 152 370 1.44E-38 T 13-10-2018 SJPD1_2821 12b1452c58dbdc84a9ef1893597f750d 374 Gene3D G3DSA:3.60.21.10 148 327 1.0E-24 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like SJPD1_2821 12b1452c58dbdc84a9ef1893597f750d 374 Pfam PF00149 Calcineurin-like phosphoesterase 151 313 2.1E-10 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 SJPD1_2085 a3e11efc6b7821ba574f53321f019f00 334 Pfam PF00248 Aldo/keto reductase family 16 313 1.7E-71 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_2085 a3e11efc6b7821ba574f53321f019f00 334 Gene3D G3DSA:3.20.20.100 1 333 5.7E-114 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2085 a3e11efc6b7821ba574f53321f019f00 334 SUPERFAMILY SSF51430 1 318 5.24E-96 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_1481 4fd7ee444b5ba5ad1a1bf254c7834dd5 143 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 10 116 5.8E-25 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 SJPD1_1481 4fd7ee444b5ba5ad1a1bf254c7834dd5 143 SUPERFAMILY SSF52540 23 106 3.95E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1481 4fd7ee444b5ba5ad1a1bf254c7834dd5 143 Gene3D G3DSA:3.40.50.300 3 142 4.3E-25 T 13-10-2018 SJPD1_1481 4fd7ee444b5ba5ad1a1bf254c7834dd5 143 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 12 128 2.7E-23 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 SJPD1_2796 53da89fd20708a75976203ffe7d921ba 160 Pfam PF00583 Acetyltransferase (GNAT) family 39 137 3.9E-13 T 13-10-2018 IPR000182 GNAT domain SJPD1_2796 53da89fd20708a75976203ffe7d921ba 160 TIGRFAM TIGR03585 PseH: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 7 141 1.6E-45 T 13-10-2018 IPR020036 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase SJPD1_2796 53da89fd20708a75976203ffe7d921ba 160 SUPERFAMILY SSF55729 10 158 7.57E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2796 53da89fd20708a75976203ffe7d921ba 160 Gene3D G3DSA:3.40.630.30 1 159 2.6E-36 T 13-10-2018 SJPD1_0961 3e202458d992dc5d2d6c431859d7d36b 80 Gene3D G3DSA:1.10.260.40 2 58 1.7E-5 T 13-10-2018 SJPD1_0961 3e202458d992dc5d2d6c431859d7d36b 80 SUPERFAMILY SSF47413 8 47 4.79E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0382 f7b8a37b404c2b26f5bb63e274995a33 82 Gene3D G3DSA:1.10.260.40 5 80 5.2E-12 T 13-10-2018 SJPD1_0382 f7b8a37b404c2b26f5bb63e274995a33 82 Pfam PF12844 Helix-turn-helix domain 14 74 3.6E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_0382 f7b8a37b404c2b26f5bb63e274995a33 82 SUPERFAMILY SSF47413 5 75 2.05E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_0382 f7b8a37b404c2b26f5bb63e274995a33 82 SMART SM00530 15 73 2.5E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 SJPD1_2113 359c12c0598968a039c26973205bfb15 102 SUPERFAMILY SSF46785 14 98 1.82E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2113 359c12c0598968a039c26973205bfb15 102 SMART SM00418 18 97 7.3E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_2113 359c12c0598968a039c26973205bfb15 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 1.1E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_2113 359c12c0598968a039c26973205bfb15 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 1.1E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_2113 359c12c0598968a039c26973205bfb15 102 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 20 35 1.1E-6 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 SJPD1_2113 359c12c0598968a039c26973205bfb15 102 Pfam PF12840 Helix-turn-helix domain 18 76 3.9E-8 T 13-10-2018 SJPD1_2113 359c12c0598968a039c26973205bfb15 102 Gene3D G3DSA:1.10.10.10 3 101 5.0E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1393 2226f177bd85397124f49c440647e3ec 196 Pfam PF02525 Flavodoxin-like fold 2 189 2.5E-32 T 13-10-2018 IPR003680 Flavodoxin-like fold SJPD1_1393 2226f177bd85397124f49c440647e3ec 196 SUPERFAMILY SSF52218 1 196 6.2E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1393 2226f177bd85397124f49c440647e3ec 196 Gene3D G3DSA:3.40.50.360 1 195 5.2E-53 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2011 d9d71b91a8f352a6878929d730a7c809 297 Pfam PF03547 Membrane transport protein 2 144 1.5E-15 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 SJPD1_2011 d9d71b91a8f352a6878929d730a7c809 297 Pfam PF03547 Membrane transport protein 154 292 3.4E-8 T 13-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 SJPD1_0327 872ecfab8af06f2d7e00b6763b48ce31 255 SUPERFAMILY SSF53474 21 252 3.67E-17 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0327 872ecfab8af06f2d7e00b6763b48ce31 255 Gene3D G3DSA:3.40.50.1820 15 255 4.3E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2205 e5515333a28ff1861808480704a09eb8 154 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 15 150 4.1E-56 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2205 e5515333a28ff1861808480704a09eb8 154 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 9 154 29.679 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2205 e5515333a28ff1861808480704a09eb8 154 SUPERFAMILY SSF52121 8 154 1.23E-55 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2205 e5515333a28ff1861808480704a09eb8 154 Gene3D G3DSA:3.40.50.960 1 154 5.0E-54 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_2205 e5515333a28ff1861808480704a09eb8 154 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 15 151 4.3E-51 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_1329 f9e0ca8c07725650b3bbc66b2965090a 267 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 5 256 2.6E-106 T 13-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 SJPD1_1329 f9e0ca8c07725650b3bbc66b2965090a 267 SUPERFAMILY SSF53613 1 259 3.74E-86 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_1329 f9e0ca8c07725650b3bbc66b2965090a 267 Pfam PF08543 Phosphomethylpyrimidine kinase 11 254 7.6E-102 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 SJPD1_1329 f9e0ca8c07725650b3bbc66b2965090a 267 Gene3D G3DSA:3.40.1190.20 1 264 5.2E-108 T 13-10-2018 IPR029056 Ribokinase-like SJPD1_1952 f84e0dd8b63f4c01674f099ad3d6c3f2 104 Pfam PF04341 Protein of unknown function, DUF485 11 98 1.3E-34 T 13-10-2018 IPR007436 Protein of unknown function DUF485 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 Gene3D G3DSA:3.40.50.300 1 189 1.0E-43 T 13-10-2018 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 PRINTS PR00094 Adenylate kinase signature 6 19 4.4E-21 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 PRINTS PR00094 Adenylate kinase signature 84 100 4.4E-21 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 PRINTS PR00094 Adenylate kinase signature 134 149 4.4E-21 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 PRINTS PR00094 Adenylate kinase signature 36 50 4.4E-21 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 Pfam PF00406 Adenylate kinase 7 163 6.4E-33 T 13-10-2018 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 SUPERFAMILY SSF52540 2 188 7.77E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0803 1b7e247b742d489de92f66255a481911 190 Hamap MF_00235 Adenylate kinase [adk]. 3 187 32.541 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 SJPD1_0803 1b7e247b742d489de92f66255a481911 190 ProSitePatterns PS00113 Adenylate kinase signature. 84 95 - T 13-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 SJPD1_0516 e382d101c13fb8204237143323470e20 182 Gene3D G3DSA:3.10.450.50 16 146 2.2E-32 T 13-10-2018 SJPD1_0516 e382d101c13fb8204237143323470e20 182 Pfam PF05494 MlaC protein 15 173 3.3E-36 T 13-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC SJPD1_0516 e382d101c13fb8204237143323470e20 182 Gene3D G3DSA:1.10.10.640 47 171 2.2E-32 T 13-10-2018 SJPD1_1673 0d2d2d8f80785f1b88af3c89650c1216 409 Pfam PF02321 Outer membrane efflux protein 21 201 1.3E-18 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1673 0d2d2d8f80785f1b88af3c89650c1216 409 Pfam PF02321 Outer membrane efflux protein 224 401 6.1E-25 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1673 0d2d2d8f80785f1b88af3c89650c1216 409 Gene3D G3DSA:1.20.1600.10 23 408 1.4E-53 T 13-10-2018 SJPD1_1673 0d2d2d8f80785f1b88af3c89650c1216 409 SUPERFAMILY SSF56954 5 401 8.63E-55 T 13-10-2018 SJPD1_1600 8e84f04ebd52d8043970e5b46b839a8a 163 Gene3D G3DSA:3.30.428.10 1 159 8.6E-48 T 13-10-2018 IPR036265 HIT-like superfamily SJPD1_1600 8e84f04ebd52d8043970e5b46b839a8a 163 SUPERFAMILY SSF54197 1 153 7.27E-38 T 13-10-2018 IPR036265 HIT-like superfamily SJPD1_1600 8e84f04ebd52d8043970e5b46b839a8a 163 Pfam PF01230 HIT domain 33 125 1.2E-15 T 13-10-2018 IPR001310 Histidine triad (HIT) protein SJPD1_0321 e58cca160a2c20786ec6e6020b3bec36 155 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 9 142 2.0E-49 T 13-10-2018 IPR014172 TonB-system energizer ExbB type-2 GO:0016020|GO:0055085 SJPD1_0321 e58cca160a2c20786ec6e6020b3bec36 155 Pfam PF01618 MotA/TolQ/ExbB proton channel family 55 139 3.8E-29 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel SJPD1_1537 acd85e18156f0b9873fc31a107900b90 254 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 208 1.3E-47 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_1537 acd85e18156f0b9873fc31a107900b90 254 SUPERFAMILY SSF53790 1 248 1.44E-67 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_1537 acd85e18156f0b9873fc31a107900b90 254 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 4 248 3.1E-105 T 13-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 SJPD1_1537 acd85e18156f0b9873fc31a107900b90 254 Gene3D G3DSA:3.40.1010.10 1 111 2.3E-31 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1537 acd85e18156f0b9873fc31a107900b90 254 Gene3D G3DSA:3.30.950.10 112 230 1.3E-48 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1537 acd85e18156f0b9873fc31a107900b90 254 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 7 21 - T 13-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 SJPD1_0697 99cfd0264893b58ba70bcc97ebe5b12a 96 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 96 1.9E-20 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 SJPD1_0697 99cfd0264893b58ba70bcc97ebe5b12a 96 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 91 8.2E-13 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 SJPD1_0697 99cfd0264893b58ba70bcc97ebe5b12a 96 SUPERFAMILY SSF141000 2 94 3.14E-20 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 SJPD1_0697 99cfd0264893b58ba70bcc97ebe5b12a 96 Gene3D G3DSA:1.10.20.60 1 94 1.5E-19 T 13-10-2018 SJPD1_0697 99cfd0264893b58ba70bcc97ebe5b12a 96 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 96 17.479 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 SJPD1_2236 957e7582d6f8bcfe55aa21c816450075 289 Gene3D G3DSA:3.40.50.720 4 271 1.6E-105 T 13-10-2018 SJPD1_2236 957e7582d6f8bcfe55aa21c816450075 289 Pfam PF04321 RmlD substrate binding domain 3 284 1.4E-101 T 13-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 SJPD1_2236 957e7582d6f8bcfe55aa21c816450075 289 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 4 282 1.0E-94 T 13-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 SJPD1_2236 957e7582d6f8bcfe55aa21c816450075 289 Gene3D G3DSA:3.90.25.10 161 278 1.6E-105 T 13-10-2018 SJPD1_2236 957e7582d6f8bcfe55aa21c816450075 289 SUPERFAMILY SSF51735 3 284 3.08E-94 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0905 8052e0339c5ed8f6177f1ab0823018e9 97 SUPERFAMILY SSF46626 24 94 8.87E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0905 8052e0339c5ed8f6177f1ab0823018e9 97 Gene3D G3DSA:1.10.760.10 20 96 1.4E-14 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 SMART SM00387 294 404 2.0E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 Gene3D G3DSA:1.10.287.130 160 253 5.1E-13 T 13-10-2018 SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 298 404 1.3E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 SUPERFAMILY SSF47384 169 253 5.49E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 Gene3D G3DSA:3.30.565.10 254 404 6.6E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 SUPERFAMILY SSF55874 251 403 2.49E-29 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 335 349 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1189 28601bb74402a0bd325abe4d539aa566 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 353 363 1.8E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 SJPD1_1072 dc8806978d2730636b21e4cd3e226f88 223 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 127 138 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1072 dc8806978d2730636b21e4cd3e226f88 223 Gene3D G3DSA:3.30.70.20 100 153 6.2E-52 T 13-10-2018 SJPD1_1072 dc8806978d2730636b21e4cd3e226f88 223 SUPERFAMILY SSF54862 37 217 2.62E-54 T 13-10-2018 SJPD1_1072 dc8806978d2730636b21e4cd3e226f88 223 Gene3D G3DSA:3.30.70.20 41 216 6.2E-52 T 13-10-2018 SJPD1_1072 dc8806978d2730636b21e4cd3e226f88 223 Pfam PF13247 4Fe-4S dicluster domain 89 183 6.0E-20 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0149 6ca341b017a06fd15c7e9ac178d2efd3 219 Pfam PF05732 Firmicute plasmid replication protein (RepL) 146 208 2.2E-4 T 13-10-2018 IPR008813 Plasmid replication protein, RepL GO:0006260|GO:0006276 SJPD1_0149 6ca341b017a06fd15c7e9ac178d2efd3 219 SUPERFAMILY SSF52172 10 126 5.55E-32 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_0149 6ca341b017a06fd15c7e9ac178d2efd3 219 Pfam PF00072 Response regulator receiver domain 11 121 1.4E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0149 6ca341b017a06fd15c7e9ac178d2efd3 219 SMART SM00448 9 121 6.5E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0149 6ca341b017a06fd15c7e9ac178d2efd3 219 Gene3D G3DSA:3.40.50.2300 5 133 3.2E-29 T 13-10-2018 SJPD1_2118 2d5222e917b64bab07a7eb61f9922c5a 448 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 177 444 1.3E-85 T 13-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 SJPD1_2118 2d5222e917b64bab07a7eb61f9922c5a 448 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 164 448 119.681 T 13-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 SJPD1_2118 2d5222e917b64bab07a7eb61f9922c5a 448 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 7 170 2.1E-47 T 13-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 SJPD1_2118 2d5222e917b64bab07a7eb61f9922c5a 448 Gene3D G3DSA:1.10.4200.10 337 446 5.5E-6 T 13-10-2018 SJPD1_2118 2d5222e917b64bab07a7eb61f9922c5a 448 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 181 442 3.0E-69 T 13-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 SJPD1_2118 2d5222e917b64bab07a7eb61f9922c5a 448 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 7 170 1.1E-47 T 13-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 Gene3D G3DSA:1.10.155.10 1 74 7.5E-19 T 13-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 266 5.3E-59 T 13-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 SUPERFAMILY SSF47757 3 75 7.72E-17 T 13-10-2018 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PIRSF PIRSF000410 1 272 7.4E-92 T 13-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 Gene3D G3DSA:3.40.50.150 75 272 1.2E-65 T 13-10-2018 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 SMART SM00138 8 272 4.4E-83 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 61 1.7E-14 T 13-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PRINTS PR00996 Glutamate methyltransferase family signature 138 154 3.6E-43 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PRINTS PR00996 Glutamate methyltransferase family signature 212 226 3.6E-43 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PRINTS PR00996 Glutamate methyltransferase family signature 231 254 3.6E-43 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 3.6E-43 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 3.6E-43 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 3.6E-43 T 13-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 SJPD1_2459 d31ceaa08f909fc118603e2c79d8af64 272 SUPERFAMILY SSF53335 76 269 5.23E-48 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2811 fc8dbed3eaf6168d156a1d7c8b254791 287 Gene3D G3DSA:3.40.190.10 81 174 1.4E-63 T 13-10-2018 SJPD1_2811 fc8dbed3eaf6168d156a1d7c8b254791 287 Hamap MF_00996 1,4-dihydroxy-6-naphtoate synthase [mqnD]. 3 267 35.991 T 13-10-2018 IPR030869 1,4-dihydroxy-6-naphtoate synthase GO:0009234|GO:0016829 SJPD1_2811 fc8dbed3eaf6168d156a1d7c8b254791 287 SUPERFAMILY SSF53850 4 265 5.26E-72 T 13-10-2018 SJPD1_2811 fc8dbed3eaf6168d156a1d7c8b254791 287 Gene3D G3DSA:3.40.190.10 7 259 1.4E-63 T 13-10-2018 SJPD1_2811 fc8dbed3eaf6168d156a1d7c8b254791 287 Pfam PF02621 Menaquinone biosynthesis 4 261 1.6E-72 T 13-10-2018 IPR003773 Menaquinone biosynthesis enzyme SJPD1_1203 cfc6fa7566df86211189ab17f0b70371 254 SUPERFAMILY SSF56300 28 248 1.29E-36 T 13-10-2018 SJPD1_1203 cfc6fa7566df86211189ab17f0b70371 254 Gene3D G3DSA:3.60.21.10 26 221 4.5E-23 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like SJPD1_1203 cfc6fa7566df86211189ab17f0b70371 254 Pfam PF00149 Calcineurin-like phosphoesterase 28 191 9.0E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 SJPD1_0838 75de00c1fd8c8b367f6b4667a78e38b1 560 Pfam PF08479 POTRA domain, ShlB-type 69 143 3.0E-15 T 13-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type SJPD1_0838 75de00c1fd8c8b367f6b4667a78e38b1 560 Gene3D G3DSA:2.40.160.50 178 553 3.5E-71 T 13-10-2018 SJPD1_0838 75de00c1fd8c8b367f6b4667a78e38b1 560 Gene3D G3DSA:3.10.20.310 57 143 6.8E-19 T 13-10-2018 SJPD1_0838 75de00c1fd8c8b367f6b4667a78e38b1 560 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 206 503 2.4E-25 T 13-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 349 462 1.4E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 SMART SM00283 263 531 2.4E-40 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 397 426 1.2E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.2E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 395 1.2E-20 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 Gene3D G3DSA:1.10.287.950 202 533 1.1E-54 T 13-10-2018 SJPD1_2324 2ae038b7d572c4b9f418f3af7d685ede 533 SUPERFAMILY SSF58104 223 532 2.62E-55 T 13-10-2018 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 9 78 8.1E-31 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 85 170 1.7E-30 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 SUPERFAMILY SSF54364 7 80 6.93E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 SUPERFAMILY SSF55200 84 171 3.92E-27 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 ProSitePatterns PS00938 Initiation factor 3 signature. 60 73 - T 13-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 3 171 27.444 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 Gene3D G3DSA:3.10.20.80 3 80 6.2E-33 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 9 171 3.5E-66 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 SJPD1_0114 d7c83694531f3cd0f031c4fa966441f2 171 Gene3D G3DSA:3.30.110.10 81 171 1.2E-32 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 SJPD1_1149 2ef2323b26b7194ce69fbc9affde07b0 131 Pfam PF02623 FliW protein 4 112 1.4E-25 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 SJPD1_1149 2ef2323b26b7194ce69fbc9affde07b0 131 Gene3D G3DSA:2.30.290.10 1 122 5.3E-20 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily SJPD1_1149 2ef2323b26b7194ce69fbc9affde07b0 131 SUPERFAMILY SSF141457 2 113 1.05E-27 T 13-10-2018 IPR024046 Flagellar assembly factor FliW domain superfamily SJPD1_1149 2ef2323b26b7194ce69fbc9affde07b0 131 Hamap MF_01185 Flagellar assembly factor FliW [fliW]. 1 120 18.667 T 13-10-2018 IPR003775 Flagellar assembly factor FliW GO:0044780 SJPD1_1968 f4d4c592f80957bc8ed0296efaea1438 393 SUPERFAMILY SSF53807 122 364 2.63E-26 T 13-10-2018 SJPD1_1968 f4d4c592f80957bc8ed0296efaea1438 393 Gene3D G3DSA:3.40.50.1980 33 373 5.1E-40 T 13-10-2018 SJPD1_1968 f4d4c592f80957bc8ed0296efaea1438 393 Pfam PF01497 Periplasmic binding protein 122 306 2.0E-19 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_0561 2084b2d74146b7c534414de1b7f9a3b2 428 Pfam PF13189 Cytidylate kinase-like family 232 408 5.4E-55 T 13-10-2018 SJPD1_0561 2084b2d74146b7c534414de1b7f9a3b2 428 SUPERFAMILY SSF52540 231 426 2.3E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0561 2084b2d74146b7c534414de1b7f9a3b2 428 Gene3D G3DSA:3.40.50.300 226 425 8.4E-57 T 13-10-2018 SJPD1_2770 66020c2e23dd4a5943ee70b1442619f8 153 SMART SM00450 42 136 4.3E-11 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2770 66020c2e23dd4a5943ee70b1442619f8 153 Pfam PF00581 Rhodanese-like domain 50 127 2.5E-9 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_2770 66020c2e23dd4a5943ee70b1442619f8 153 Gene3D G3DSA:3.40.250.10 39 131 1.9E-17 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_2770 66020c2e23dd4a5943ee70b1442619f8 153 SUPERFAMILY SSF52821 36 128 5.76E-21 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1838 479027374f8c9d87318997b3056653e1 464 Pfam PF00753 Metallo-beta-lactamase superfamily 14 93 6.8E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1838 479027374f8c9d87318997b3056653e1 464 Pfam PF10996 Beta-Casp domain 255 380 3.1E-28 T 13-10-2018 IPR022712 Beta-Casp domain SJPD1_1838 479027374f8c9d87318997b3056653e1 464 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 394 455 1.1E-13 T 13-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain SJPD1_1838 479027374f8c9d87318997b3056653e1 464 SMART SM00849 14 250 3.6E-18 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1838 479027374f8c9d87318997b3056653e1 464 Gene3D G3DSA:3.40.50.10890 223 406 7.2E-141 T 13-10-2018 SJPD1_1838 479027374f8c9d87318997b3056653e1 464 SUPERFAMILY SSF56281 4 454 2.36E-122 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1838 479027374f8c9d87318997b3056653e1 464 Gene3D G3DSA:3.60.15.10 7 439 7.2E-141 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1838 479027374f8c9d87318997b3056653e1 464 SMART SM01027 255 380 4.8E-56 T 13-10-2018 IPR022712 Beta-Casp domain SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 Pfam PF01252 Signal peptidase (SPase) II 13 141 2.6E-24 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 88 103 9.0E-13 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 123 139 9.0E-13 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 44 52 9.0E-13 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 TIGRFAM TIGR00077 lspA: signal peptidase II 3 146 6.3E-31 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 3 148 12.733 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0111 b0610ff8986cfdf5db78d80d2b10a708 148 ProSitePatterns PS00855 Signal peptidases II signature. 91 103 - T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 SJPD1_0598 23d2f02ff81dcd7c256a8bdb94ce60c5 376 SUPERFAMILY SSF53383 28 372 5.63E-69 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_0598 23d2f02ff81dcd7c256a8bdb94ce60c5 376 Pfam PF00155 Aminotransferase class I and II 27 354 6.1E-37 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_0598 23d2f02ff81dcd7c256a8bdb94ce60c5 376 Gene3D G3DSA:3.90.1150.10 8 359 9.0E-119 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_0598 23d2f02ff81dcd7c256a8bdb94ce60c5 376 Gene3D G3DSA:3.40.640.10 38 278 9.0E-119 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_2413 faa56a18e8a73c299f70d2260abc1fe4 116 SUPERFAMILY SSF64263 1 116 4.84E-45 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2413 faa56a18e8a73c299f70d2260abc1fe4 116 Pfam PF01196 Ribosomal protein L17 20 116 2.3E-32 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2413 faa56a18e8a73c299f70d2260abc1fe4 116 Gene3D G3DSA:3.90.1030.10 1 116 1.6E-43 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2413 faa56a18e8a73c299f70d2260abc1fe4 116 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.138 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2413 faa56a18e8a73c299f70d2260abc1fe4 116 TIGRFAM TIGR00059 L17: ribosomal protein bL17 6 116 2.4E-44 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 Gene3D G3DSA:3.40.50.720 5 253 2.3E-80 T 13-10-2018 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 118 253 2.8E-39 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 PIRSF PIRSF000161 1 255 3.0E-77 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 SUPERFAMILY SSF51735 1 255 2.06E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 254 5.9E-72 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 254 30.827 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 Gene3D G3DSA:3.30.360.10 117 223 2.3E-80 T 13-10-2018 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 139 156 - T 13-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 115 3.2E-22 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 SJPD1_0206 eaea8fe3d5917d1c1a13d2bf6f4f8dd6 255 SUPERFAMILY SSF55347 117 225 1.29E-32 T 13-10-2018 SJPD1_1608 29329dbd28a2a628f786f28d26bf74b0 376 Pfam PF01292 Prokaryotic cytochrome b561 10 187 8.3E-17 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 SJPD1_1608 29329dbd28a2a628f786f28d26bf74b0 376 Gene3D G3DSA:1.20.950.20 1 177 2.4E-15 T 13-10-2018 SJPD1_1608 29329dbd28a2a628f786f28d26bf74b0 376 Pfam PF09626 Dihaem cytochrome c 246 365 1.1E-30 T 13-10-2018 IPR018588 Dihaem cytochrome c SJPD1_1608 29329dbd28a2a628f786f28d26bf74b0 376 SUPERFAMILY SSF81342 6 192 1.26E-21 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_0535 6915e278ffcdc4a77d34317b74bcc821 321 SUPERFAMILY SSF161098 89 301 6.28E-15 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_0535 6915e278ffcdc4a77d34317b74bcc821 321 Gene3D G3DSA:1.10.3720.10 86 314 2.4E-14 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_0535 6915e278ffcdc4a77d34317b74bcc821 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 318 1.3E-27 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 Pfam PF00034 Cytochrome c 160 246 2.6E-4 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 Pfam PF00034 Cytochrome c 53 150 1.1E-12 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 SUPERFAMILY SSF46626 29 149 8.72E-19 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 Gene3D G3DSA:1.10.760.10 50 156 2.7E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 Gene3D G3DSA:1.10.760.10 157 256 2.6E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 SUPERFAMILY SSF46626 160 267 7.09E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0908 b11be80008962882daf950179a05c2aa 284 PIRSF PIRSF019225 1 48 1.8E-18 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_0908 b11be80008962882daf950179a05c2aa 284 PIRSF PIRSF019225 153 284 3.6E-56 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_0908 b11be80008962882daf950179a05c2aa 284 PIRSF PIRSF019225 41 157 1.4E-36 T 13-10-2018 IPR021195 Ubiquinol cytochrome c reductase, cytochrome c1 subunit, predicted SJPD1_1867 fd95b5077fe1ba83bb0a737de50b04ea 372 Gene3D G3DSA:3.40.50.2300 139 268 6.0E-88 T 13-10-2018 SJPD1_1867 fd95b5077fe1ba83bb0a737de50b04ea 372 SUPERFAMILY SSF53822 21 366 9.93E-79 T 13-10-2018 IPR028082 Periplasmic binding protein-like I SJPD1_1867 fd95b5077fe1ba83bb0a737de50b04ea 372 Pfam PF13458 Periplasmic binding protein 22 363 6.6E-51 T 13-10-2018 IPR028081 Leucine-binding protein domain SJPD1_1867 fd95b5077fe1ba83bb0a737de50b04ea 372 Gene3D G3DSA:3.40.50.2300 45 351 6.0E-88 T 13-10-2018 SJPD1_1271 b8828774436de39d0910a5f7c3b7fcbe 316 Pfam PF13536 Putative multidrug resistance efflux transporter 39 303 9.5E-95 T 13-10-2018 IPR032713 Putative multidrug resistance efflux transporter SJPD1_2885 9a90d0e3670891432f34eb97807ab2c2 306 Gene3D G3DSA:3.20.20.370 4 218 5.6E-51 T 13-10-2018 SJPD1_2885 9a90d0e3670891432f34eb97807ab2c2 306 Pfam PF01522 Polysaccharide deacetylase 60 183 4.7E-22 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 SJPD1_2885 9a90d0e3670891432f34eb97807ab2c2 306 SUPERFAMILY SSF88713 19 202 1.46E-34 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 SJPD1_2863 9ea9c1081dde4cd5e3ae95c99d0f11dc 221 Gene3D G3DSA:3.30.70.20 3 180 1.2E-51 T 13-10-2018 SJPD1_2863 9ea9c1081dde4cd5e3ae95c99d0f11dc 221 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 91 102 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2863 9ea9c1081dde4cd5e3ae95c99d0f11dc 221 SUPERFAMILY SSF54862 1 185 6.8E-55 T 13-10-2018 SJPD1_2863 9ea9c1081dde4cd5e3ae95c99d0f11dc 221 Pfam PF13247 4Fe-4S dicluster domain 54 147 7.3E-20 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2863 9ea9c1081dde4cd5e3ae95c99d0f11dc 221 Gene3D G3DSA:3.30.70.20 65 117 1.2E-51 T 13-10-2018 SJPD1_1835 9efb2312c5ee19c646169184728df170 228 SUPERFAMILY SSF53850 19 227 1.28E-26 T 13-10-2018 SJPD1_1835 9efb2312c5ee19c646169184728df170 228 Gene3D G3DSA:3.40.190.10 24 226 2.4E-21 T 13-10-2018 SJPD1_1835 9efb2312c5ee19c646169184728df170 228 Gene3D G3DSA:3.40.190.10 104 200 2.4E-21 T 13-10-2018 SJPD1_1835 9efb2312c5ee19c646169184728df170 228 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 21 226 1.3E-16 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF SJPD1_0326 10b457d972b63eeb243111e88a4ab1a8 418 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 2 412 25.637 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 SJPD1_0326 10b457d972b63eeb243111e88a4ab1a8 418 Pfam PF02601 Exonuclease VII, large subunit 121 401 1.5E-72 T 13-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 SJPD1_0326 10b457d972b63eeb243111e88a4ab1a8 418 Pfam PF13742 OB-fold nucleic acid binding domain 5 97 2.9E-29 T 13-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 SJPD1_0326 10b457d972b63eeb243111e88a4ab1a8 418 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 6 410 2.2E-127 T 13-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 SJPD1_1213 52d5e25127dd9db4212a6b8a87f0f755 383 Gene3D G3DSA:1.20.1090.10 190 383 1.1E-59 T 13-10-2018 SJPD1_1213 52d5e25127dd9db4212a6b8a87f0f755 383 SUPERFAMILY SSF56796 13 381 1.03E-122 T 13-10-2018 SJPD1_1213 52d5e25127dd9db4212a6b8a87f0f755 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 265 285 - T 13-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 SJPD1_1213 52d5e25127dd9db4212a6b8a87f0f755 383 Gene3D G3DSA:3.40.50.1970 8 188 7.5E-56 T 13-10-2018 SJPD1_1213 52d5e25127dd9db4212a6b8a87f0f755 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 16 375 2.5E-117 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 188 202 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 218 244 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 270 294 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 314 330 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 60 76 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 245 269 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 PRINTS PR01050 Pyruvate kinase family signature 295 313 7.6E-59 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 Pfam PF02887 Pyruvate kinase, alpha/beta domain 357 468 2.8E-26 T 13-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 SUPERFAMILY SSF51621 2 342 4.89E-91 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 Gene3D G3DSA:3.20.20.60 3 336 7.9E-161 T 13-10-2018 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 Pfam PF00224 Pyruvate kinase, barrel domain 3 339 8.8E-120 T 13-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 SUPERFAMILY SSF50800 71 169 3.66E-19 T 13-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 Gene3D G3DSA:3.40.1380.20 337 466 7.9E-161 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 Gene3D G3DSA:2.40.33.10 71 170 7.9E-161 T 13-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 SUPERFAMILY SSF52935 326 468 1.44E-28 T 13-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_0611 f34ec8f8490c215c1956104a9de0e5d2 481 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 467 1.5E-145 T 13-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 SJPD1_1348 c18fd24606bc5641e2bb9d5cb84dc68a 253 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 3 241 8.9E-65 T 13-10-2018 IPR023875 DNA metabolism protein, putative SJPD1_1348 c18fd24606bc5641e2bb9d5cb84dc68a 253 Pfam PF13566 Domain of unknown function (DUF4130 82 240 3.3E-37 T 13-10-2018 IPR025404 Domain of unknown function DUF4130 SJPD1_2504 2b2c1325ecd6ec8e91da38b64bd2eff5 196 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 4 194 7.3E-74 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 SJPD1_2504 2b2c1325ecd6ec8e91da38b64bd2eff5 196 Hamap MF_01389 Urease accessory protein UreG [ureG]. 2 196 39.023 T 13-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 SJPD1_2504 2b2c1325ecd6ec8e91da38b64bd2eff5 196 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 173 4.8E-31 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain SJPD1_2504 2b2c1325ecd6ec8e91da38b64bd2eff5 196 PIRSF PIRSF005624 1 196 7.3E-45 T 13-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 SJPD1_2504 2b2c1325ecd6ec8e91da38b64bd2eff5 196 SUPERFAMILY SSF52540 4 194 1.02E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2504 2b2c1325ecd6ec8e91da38b64bd2eff5 196 Gene3D G3DSA:3.40.50.300 3 195 5.5E-43 T 13-10-2018 SJPD1_2349 64bcd9176369252c9f7dec29e794de7e 294 SMART SM00342 205 289 3.1E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2349 64bcd9176369252c9f7dec29e794de7e 294 Pfam PF12833 Helix-turn-helix domain 213 290 9.7E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_2349 64bcd9176369252c9f7dec29e794de7e 294 SUPERFAMILY SSF46689 244 291 4.48E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2349 64bcd9176369252c9f7dec29e794de7e 294 Gene3D G3DSA:1.10.10.60 182 293 1.7E-19 T 13-10-2018 SJPD1_0996 017a997af4de2b272f74eaf062537fc1 195 Gene3D G3DSA:1.10.760.10 113 180 2.4E-10 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0996 017a997af4de2b272f74eaf062537fc1 195 SUPERFAMILY SSF46626 113 181 1.02E-11 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1996 bf187256b5598f365f1392d2afe495f7 75 Gene3D G3DSA:1.20.58.660 1 75 2.5E-25 T 13-10-2018 SJPD1_1996 bf187256b5598f365f1392d2afe495f7 75 Pfam PF04325 Protein of unknown function (DUF465) 19 64 4.4E-14 T 13-10-2018 IPR007420 Protein of unknown function DUF465 SJPD1_2098 fb3867b73217daa4c581ab0d9ceee47e 382 Gene3D G3DSA:3.40.50.1970 1 184 5.6E-48 T 13-10-2018 SJPD1_2098 fb3867b73217daa4c581ab0d9ceee47e 382 Gene3D G3DSA:1.20.1090.10 186 382 1.6E-41 T 13-10-2018 SJPD1_2098 fb3867b73217daa4c581ab0d9ceee47e 382 SUPERFAMILY SSF56796 1 380 3.93E-101 T 13-10-2018 SJPD1_2098 fb3867b73217daa4c581ab0d9ceee47e 382 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 373 9.3E-91 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 200 212 1.2E-14 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 3 19 1.2E-14 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 52 65 1.2E-14 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 1.2E-14 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 SUPERFAMILY SSF53335 1 279 5.05E-43 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 203 209 - T 13-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 SJPD1_2629 76f0ccd85f4e5273e2f4f422cd2e3503 325 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 3 286 1.4E-52 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 Gene3D G3DSA:4.10.910.10 73 118 3.4E-24 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 SUPERFAMILY SSF46946 2 115 2.69E-43 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 PIRSF PIRSF002134 1 122 4.3E-42 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 5.6E-53 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 Gene3D G3DSA:1.10.8.50 1 72 9.5E-29 T 13-10-2018 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 8.0E-32 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 13-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2417 45ea84ade327a2aa951031468d2d2b35 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 26.392 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2494 023661ccdd4e37e5360830a9c5479a81 252 TIGRFAM TIGR00241 CoA_E_activ: putative CoA-substrate-specific enzyme activase 3 245 3.6E-66 T 13-10-2018 IPR008275 CoA enzyme activase SJPD1_2494 023661ccdd4e37e5360830a9c5479a81 252 SUPERFAMILY SSF53067 1 245 2.08E-42 T 13-10-2018 SJPD1_2494 023661ccdd4e37e5360830a9c5479a81 252 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 40 245 8.6E-41 T 13-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 SJPD1_2494 023661ccdd4e37e5360830a9c5479a81 252 Gene3D G3DSA:3.30.420.40 4 245 5.1E-72 T 13-10-2018 SJPD1_2494 023661ccdd4e37e5360830a9c5479a81 252 Gene3D G3DSA:3.30.420.40 88 230 5.1E-72 T 13-10-2018 SJPD1_2071 7bfefb5c7a869a49706303a7dee47aca 152 SUPERFAMILY SSF55729 5 146 1.59E-16 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2071 7bfefb5c7a869a49706303a7dee47aca 152 Pfam PF00583 Acetyltransferase (GNAT) family 46 139 2.4E-6 T 13-10-2018 IPR000182 GNAT domain SJPD1_2071 7bfefb5c7a869a49706303a7dee47aca 152 Gene3D G3DSA:3.40.630.30 2 103 4.1E-19 T 13-10-2018 SJPD1_0240 5d81b37d40267128e58ed0c00e950a3d 304 Pfam PF02219 Methylenetetrahydrofolate reductase 49 303 2.9E-17 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 SJPD1_0240 5d81b37d40267128e58ed0c00e950a3d 304 Gene3D G3DSA:3.20.20.220 3 304 2.2E-29 T 13-10-2018 SJPD1_0240 5d81b37d40267128e58ed0c00e950a3d 304 SUPERFAMILY SSF51730 13 303 1.08E-39 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like SJPD1_2039 c643dda56f709da9bd8b907566c4239d 242 Gene3D G3DSA:3.30.2350.10 46 233 3.7E-46 T 13-10-2018 SJPD1_2039 c643dda56f709da9bd8b907566c4239d 242 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 88 102 - T 13-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_2039 c643dda56f709da9bd8b907566c4239d 242 SUPERFAMILY SSF55120 53 239 2.56E-46 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_2039 c643dda56f709da9bd8b907566c4239d 242 Pfam PF00849 RNA pseudouridylate synthase 80 195 5.5E-26 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0597 224528b1d3083dc0a9dae38d35504bb3 221 SUPERFAMILY SSF69572 4 203 2.22E-53 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 SJPD1_0597 224528b1d3083dc0a9dae38d35504bb3 221 Pfam PF00899 ThiF family 6 191 1.1E-40 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 SJPD1_0597 224528b1d3083dc0a9dae38d35504bb3 221 Gene3D G3DSA:3.40.50.720 1 216 4.6E-50 T 13-10-2018 SJPD1_0158 2bee4528a0733e17283b8710844fc532 321 Gene3D G3DSA:1.10.3720.10 113 318 6.9E-53 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_0158 2bee4528a0733e17283b8710844fc532 321 SUPERFAMILY SSF161098 117 304 4.45E-44 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_0158 2bee4528a0733e17283b8710844fc532 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 138 316 1.6E-18 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_0158 2bee4528a0733e17283b8710844fc532 321 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 115 210 5.7E-24 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 SJPD1_1215 8a22a9ae9effd31dd9a23efaafa5a892 262 Pfam PF13649 Methyltransferase domain 47 131 8.5E-11 T 13-10-2018 SJPD1_1215 8a22a9ae9effd31dd9a23efaafa5a892 262 Gene3D G3DSA:3.40.50.150 7 166 4.3E-17 T 13-10-2018 SJPD1_1215 8a22a9ae9effd31dd9a23efaafa5a892 262 SUPERFAMILY SSF53335 7 135 8.74E-20 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2874 66408d29f9b0298e2300e800bdb07136 432 Pfam PF02321 Outer membrane efflux protein 238 414 3.3E-31 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2874 66408d29f9b0298e2300e800bdb07136 432 Pfam PF02321 Outer membrane efflux protein 24 210 3.7E-18 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_2874 66408d29f9b0298e2300e800bdb07136 432 Gene3D G3DSA:1.20.1600.10 23 431 4.1E-75 T 13-10-2018 SJPD1_2874 66408d29f9b0298e2300e800bdb07136 432 SUPERFAMILY SSF56954 3 417 1.96E-70 T 13-10-2018 SJPD1_1903 d79cf6f787fd8e016e3bc39c94fa3d29 305 SUPERFAMILY SSF56524 55 301 5.76E-79 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 SJPD1_1903 d79cf6f787fd8e016e3bc39c94fa3d29 305 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 1 305 48.996 T 13-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 SJPD1_1903 d79cf6f787fd8e016e3bc39c94fa3d29 305 Pfam PF00174 Oxidoreductase molybdopterin binding domain 84 243 4.5E-27 T 13-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 SJPD1_1903 d79cf6f787fd8e016e3bc39c94fa3d29 305 Gene3D G3DSA:3.90.420.10 45 305 3.1E-93 T 13-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 SJPD1_2352 acde8871077a759a217cfbddf5ed5256 142 Pfam PF01814 Hemerythrin HHE cation binding domain 14 120 1.6E-9 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 SJPD1_2352 acde8871077a759a217cfbddf5ed5256 142 Gene3D G3DSA:1.20.120.50 1 132 2.2E-27 T 13-10-2018 IPR035938 Hemerythrin-like superfamily SJPD1_2352 acde8871077a759a217cfbddf5ed5256 142 ProSitePatterns PS00550 Hemerythrin family signature. 57 80 - T 13-10-2018 IPR016131 Haemerythrin, iron-binding site GO:0046872 SJPD1_2352 acde8871077a759a217cfbddf5ed5256 142 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 126 1.6E-28 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 SJPD1_2352 acde8871077a759a217cfbddf5ed5256 142 SUPERFAMILY SSF47188 2 125 3.66E-26 T 13-10-2018 IPR035938 Hemerythrin-like superfamily SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 320 759 4.0E-172 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1057 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 Pfam PF14579 Helix-hairpin-helix motif 833 926 8.4E-22 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 SUPERFAMILY SSF89550 7 277 4.51E-35 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 Gene3D G3DSA:3.20.20.140 1 283 2.0E-102 T 13-10-2018 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 Pfam PF02811 PHP domain 8 187 2.3E-51 T 13-10-2018 IPR004013 PHP domain GO:0003824 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 Gene3D G3DSA:1.10.150.870 790 914 4.2E-6 T 13-10-2018 SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 SMART SM00481 7 74 4.2E-33 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal SJPD1_0780 9b066cfb89673b405b7e2e92bc1e9f3b 1181 Gene3D G3DSA:1.10.10.1600 451 540 4.3E-24 T 13-10-2018 SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 SUPERFAMILY SSF46785 4 83 1.3E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 SUPERFAMILY SSF53383 68 455 4.49E-73 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 4.5E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 Pfam PF00155 Aminotransferase class I and II 124 401 6.4E-14 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 Gene3D G3DSA:3.40.640.10 89 449 8.3E-104 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 Gene3D G3DSA:1.10.10.10 2 85 2.3E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_1277 80cd1248a9bc1255172f5e6b44d84f13 465 SMART SM00345 16 74 3.5E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 SJPD1_0818 ed1fced57cd2072be10c64b0cbf92c32 152 Pfam PF00583 Acetyltransferase (GNAT) family 32 117 1.4E-10 T 13-10-2018 IPR000182 GNAT domain SJPD1_0818 ed1fced57cd2072be10c64b0cbf92c32 152 SUPERFAMILY SSF55729 36 151 3.26E-18 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_0818 ed1fced57cd2072be10c64b0cbf92c32 152 Gene3D G3DSA:3.40.630.30 3 135 3.9E-26 T 13-10-2018 SJPD1_0246 b3ec5c55781075825e1d33018c257d76 172 Gene3D G3DSA:3.20.20.70 5 172 8.2E-30 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0246 b3ec5c55781075825e1d33018c257d76 172 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 26 170 8.3E-24 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 SJPD1_0246 b3ec5c55781075825e1d33018c257d76 172 SUPERFAMILY SSF51569 26 171 1.47E-18 T 13-10-2018 SJPD1_1915 2c577f1dd298340e526d0ff7b11b4ac0 65 Pfam PF09962 Uncharacterized conserved protein (DUF2196) 4 63 1.3E-30 T 13-10-2018 IPR019240 Protein of unknown function DUF2196 SJPD1_1915 2c577f1dd298340e526d0ff7b11b4ac0 65 TIGRFAM TIGR03833 TIGR03833: conserved hypothetical protein 4 63 1.9E-33 T 13-10-2018 IPR019240 Protein of unknown function DUF2196 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 Gene3D G3DSA:2.70.150.20 153 263 6.9E-30 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 363 369 - T 13-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 SUPERFAMILY SSF81653 162 259 7.32E-22 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 Pfam PF00122 E1-E2 ATPase 161 340 2.9E-45 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 SUPERFAMILY SSF56784 359 654 2.98E-57 T 13-10-2018 IPR036412 HAD-like superfamily SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 110 656 7.7E-167 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 SUPERFAMILY SSF81665 110 653 5.89E-10 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 475 486 2.5E-24 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 578 590 2.5E-24 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 209 223 2.5E-24 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 554 573 2.5E-24 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 361 375 2.5E-24 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 498 508 2.5E-24 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 131 634 2.2E-67 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 554 570 6.1E-5 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 586 611 6.1E-5 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 Gene3D G3DSA:3.40.50.1000 342 607 1.0E-78 T 13-10-2018 IPR023214 HAD superfamily SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 110 658 2.7E-153 T 13-10-2018 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 Gene3D G3DSA:3.40.1110.10 372 482 1.0E-78 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 SJPD1_1098 615d5ccf3b4a17ff889019c0b5d6425b 661 Pfam PF00702 haloacid dehalogenase-like hydrolase 357 568 4.3E-37 T 13-10-2018 SJPD1_1368 afa79b016ecc9255da5203049bf0b0f3 234 Pfam PF06210 Protein of unknown function (DUF1003) 114 213 2.9E-40 T 13-10-2018 IPR010406 Protein of unknown function DUF1003 SJPD1_0482 714b88d4ba594bb7dd63eb3906e32413 417 SUPERFAMILY SSF55073 261 405 2.2E-13 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0482 714b88d4ba594bb7dd63eb3906e32413 417 SMART SM00267 240 410 6.3E-5 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0482 714b88d4ba594bb7dd63eb3906e32413 417 Pfam PF00990 Diguanylate cyclase, GGDEF domain 254 396 4.6E-11 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0482 714b88d4ba594bb7dd63eb3906e32413 417 Gene3D G3DSA:3.30.70.270 250 413 4.8E-17 T 13-10-2018 SJPD1_0894 64a787f6ca13b6af63afbab7413a279c 185 Pfam PF02613 Nitrate reductase delta subunit 43 150 2.0E-21 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone SJPD1_0894 64a787f6ca13b6af63afbab7413a279c 185 SUPERFAMILY SSF89155 18 155 7.98E-24 T 13-10-2018 IPR036411 TorD-like superfamily SJPD1_0894 64a787f6ca13b6af63afbab7413a279c 185 Gene3D G3DSA:1.10.3480.10 4 180 5.5E-28 T 13-10-2018 SJPD1_1587 2af712f8c6275fbcef4447e262eb14db 384 Gene3D G3DSA:1.10.3720.10 169 381 2.2E-32 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1587 2af712f8c6275fbcef4447e262eb14db 384 Gene3D G3DSA:1.10.3720.10 61 158 3.4E-14 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1587 2af712f8c6275fbcef4447e262eb14db 384 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 380 3.7E-10 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_1587 2af712f8c6275fbcef4447e262eb14db 384 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 75 137 3.2E-15 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 SJPD1_1587 2af712f8c6275fbcef4447e262eb14db 384 SUPERFAMILY SSF161098 172 365 1.31E-25 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1587 2af712f8c6275fbcef4447e262eb14db 384 SUPERFAMILY SSF161098 75 140 2.62E-13 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1077 dc336c26d287709bdec42956408aba23 288 Gene3D G3DSA:3.30.70.2050 99 162 4.8E-9 T 13-10-2018 SJPD1_1077 dc336c26d287709bdec42956408aba23 288 Gene3D G3DSA:3.30.70.2050 238 287 1.5E-15 T 13-10-2018 SJPD1_1077 dc336c26d287709bdec42956408aba23 288 SUPERFAMILY SSF160387 58 151 8.89E-24 T 13-10-2018 SJPD1_1077 dc336c26d287709bdec42956408aba23 288 Pfam PF05573 NosL 163 285 3.8E-31 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL SJPD1_1077 dc336c26d287709bdec42956408aba23 288 Pfam PF05573 NosL 37 140 5.7E-13 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL SJPD1_1077 dc336c26d287709bdec42956408aba23 288 SUPERFAMILY SSF160387 190 287 7.06E-27 T 13-10-2018 SJPD1_2560 0f8d8d429bde67b23abb1b81ff074a57 247 SUPERFAMILY SSF89155 7 206 1.83E-30 T 13-10-2018 IPR036411 TorD-like superfamily SJPD1_2560 0f8d8d429bde67b23abb1b81ff074a57 247 Pfam PF02613 Nitrate reductase delta subunit 46 168 6.8E-16 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone SJPD1_2560 0f8d8d429bde67b23abb1b81ff074a57 247 Gene3D G3DSA:1.10.3480.10 3 205 3.1E-24 T 13-10-2018 SJPD1_1201 e9f37457770b0b11208545b3eef208ac 165 Pfam PF03724 META domain 50 159 3.9E-21 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ SJPD1_1201 e9f37457770b0b11208545b3eef208ac 165 Gene3D G3DSA:2.40.128.270 43 162 9.6E-18 T 13-10-2018 IPR038670 HslJ-like superfamily SJPD1_0370 8b664e9bc7b5aabede803d9058d08762 248 Gene3D G3DSA:3.20.20.70 1 206 2.0E-18 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 SJPD1_0370 8b664e9bc7b5aabede803d9058d08762 248 SUPERFAMILY SSF102114 11 188 4.84E-18 T 13-10-2018 SJPD1_0370 8b664e9bc7b5aabede803d9058d08762 248 Pfam PF04055 Radical SAM superfamily 11 132 4.1E-10 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 SJPD1_1851 fb02b9a94473fe8be689e471d93bd67a 148 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 16 136 9.2E-23 T 13-10-2018 IPR010181 CGCAxxGCC motif SJPD1_1546 d3624f4d820e8cde8f3c4c71b244e96c 216 Gene3D G3DSA:3.40.50.360 1 172 1.1E-30 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1546 d3624f4d820e8cde8f3c4c71b244e96c 216 SUPERFAMILY SSF52218 1 210 1.08E-28 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1546 d3624f4d820e8cde8f3c4c71b244e96c 216 Pfam PF03358 NADPH-dependent FMN reductase 1 119 3.1E-16 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SJPD1_2738 370549552098fa8539cc0f2e330589e1 361 Gene3D G3DSA:3.20.20.300 19 360 1.5E-94 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 SJPD1_2738 370549552098fa8539cc0f2e330589e1 361 SUPERFAMILY SSF51445 32 359 8.21E-72 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily SJPD1_2738 370549552098fa8539cc0f2e330589e1 361 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 27 359 4.5E-70 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 SJPD1_0419 fd4822a55316c3fa2584e34db07129fc 77 Gene3D G3DSA:1.10.720.30 15 74 2.8E-29 T 13-10-2018 IPR036361 SAP domain superfamily SJPD1_0419 fd4822a55316c3fa2584e34db07129fc 77 Pfam PF09905 DNA-binding protein VF530 8 69 9.0E-34 T 13-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 SJPD1_2326 d795035b625aa960fde8090722ce5856 222 Pfam PF01895 PhoU domain 149 209 2.5E-6 T 13-10-2018 IPR026022 PhoU domain SJPD1_2326 d795035b625aa960fde8090722ce5856 222 SUPERFAMILY SSF109755 3 218 3.45E-24 T 13-10-2018 SJPD1_2326 d795035b625aa960fde8090722ce5856 222 Gene3D G3DSA:1.20.58.220 1 220 3.1E-24 T 13-10-2018 IPR038078 PhoU-like domain superfamily SJPD1_2591 d38f087999db636c334117e4b3355701 224 Pfam PF00072 Response regulator receiver domain 14 124 1.1E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_2591 d38f087999db636c334117e4b3355701 224 Gene3D G3DSA:1.10.10.10 152 205 3.7E-5 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2591 d38f087999db636c334117e4b3355701 224 Gene3D G3DSA:3.40.50.2300 10 142 9.5E-23 T 13-10-2018 SJPD1_2591 d38f087999db636c334117e4b3355701 224 Pfam PF05732 Firmicute plasmid replication protein (RepL) 142 211 1.9E-6 T 13-10-2018 IPR008813 Plasmid replication protein, RepL GO:0006260|GO:0006276 SJPD1_2591 d38f087999db636c334117e4b3355701 224 SUPERFAMILY SSF46785 153 207 2.4E-5 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2591 d38f087999db636c334117e4b3355701 224 SUPERFAMILY SSF52172 11 137 1.22E-25 T 13-10-2018 IPR011006 CheY-like superfamily SJPD1_2591 d38f087999db636c334117e4b3355701 224 SMART SM00448 12 124 3.3E-17 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 SJPD1_0417 149168248c722a94a844f246a717023d 138 Gene3D G3DSA:3.10.450.50 1 135 1.1E-32 T 13-10-2018 SJPD1_0417 149168248c722a94a844f246a717023d 138 Pfam PF07366 SnoaL-like polyketide cyclase 11 132 4.2E-30 T 13-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 SJPD1_0417 149168248c722a94a844f246a717023d 138 SUPERFAMILY SSF54427 1 134 1.84E-34 T 13-10-2018 IPR032710 NTF2-like domain superfamily SJPD1_1905 ef41cd4d4cc6191ae5c79065009afaa7 224 Pfam PF13707 RloB-like protein 24 220 4.1E-32 T 13-10-2018 IPR025591 RloB-like protein SJPD1_0162 15b8554471ef26ae075141349f703728 104 Pfam PF00034 Cytochrome c 23 102 1.1E-5 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_0162 15b8554471ef26ae075141349f703728 104 SUPERFAMILY SSF46626 21 101 1.43E-13 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0162 15b8554471ef26ae075141349f703728 104 Gene3D G3DSA:1.10.760.10 23 101 3.3E-15 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2661 7eaecb389a64fa8c3b509b40ed1785e7 68 Pfam PF14255 Cysteine-rich CPXCG 10 59 1.1E-17 T 13-10-2018 IPR025990 Cysteine-rich CPXCG protein SJPD1_2661 7eaecb389a64fa8c3b509b40ed1785e7 68 PIRSF PIRSF037225 1 66 3.2E-17 T 13-10-2018 IPR017143 Uncharacterised conserved protein UCP037225 SJPD1_1023 2e531079a09310f933171d0abad02c21 108 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 26 95 2.9E-11 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1023 2e531079a09310f933171d0abad02c21 108 Gene3D G3DSA:1.10.760.10 24 102 7.0E-12 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1023 2e531079a09310f933171d0abad02c21 108 SUPERFAMILY SSF46626 26 97 3.15E-11 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_1472 5ef7345c5264db413b2e454e07e243a7 508 Gene3D G3DSA:3.30.420.40 155 280 1.5E-7 T 13-10-2018 SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 PRINTS PR00354 7Fe ferredoxin signature 59 69 3.5E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 PRINTS PR00354 7Fe ferredoxin signature 69 79 3.5E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 PRINTS PR00354 7Fe ferredoxin signature 86 103 3.5E-5 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 Gene3D G3DSA:3.30.70.20 9 178 1.1E-35 T 13-10-2018 SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 Gene3D G3DSA:3.30.70.20 65 122 1.1E-35 T 13-10-2018 SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 Pfam PF13247 4Fe-4S dicluster domain 56 168 3.3E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 91 102 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2584 a1c970f05e4f094d501e58d34f04920c 187 SUPERFAMILY SSF54862 1 182 3.66E-49 T 13-10-2018 SJPD1_1630 9f66501f15b248577f9ba1119bd77ef2 245 Pfam PF13144 Chaperone for flagella basal body P-ring formation 59 240 1.1E-19 T 13-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal SJPD1_1630 9f66501f15b248577f9ba1119bd77ef2 245 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 110 243 1.4E-18 T 13-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal SJPD1_1774 38d0b1e3267723e42623af8a426c6779 215 Pfam PF01844 HNH endonuclease 164 211 2.5E-11 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 SJPD1_1774 38d0b1e3267723e42623af8a426c6779 215 Gene3D G3DSA:3.30.40.60 121 215 2.2E-15 T 13-10-2018 SJPD1_1774 38d0b1e3267723e42623af8a426c6779 215 SMART SM00507 151 207 4.3E-13 T 13-10-2018 IPR003615 HNH nuclease SJPD1_0880 f476c597d9acb0e8e2ec0a4302949574 117 Gene3D G3DSA:3.30.70.920 1 71 2.9E-12 T 13-10-2018 SJPD1_0880 f476c597d9acb0e8e2ec0a4302949574 117 Hamap MF_02200 Chaperone NapD [napD]. 1 78 16.321 T 13-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly SJPD1_0880 f476c597d9acb0e8e2ec0a4302949574 117 Pfam PF03927 NapD protein 1 77 7.5E-22 T 13-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly SJPD1_0263 e8220ec1146f4432a3db76474dfde778 122 Pfam PF02620 Uncharacterized ACR, COG1399 39 118 2.4E-6 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD SJPD1_2607 424bc0ab46df28902bd7e3b5702d9d2d 104 SUPERFAMILY SSF54637 15 83 4.06E-9 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_2607 424bc0ab46df28902bd7e3b5702d9d2d 104 Pfam PF07977 FabA-like domain 25 67 9.2E-5 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 SJPD1_2607 424bc0ab46df28902bd7e3b5702d9d2d 104 Gene3D G3DSA:3.10.129.10 8 101 8.1E-9 T 13-10-2018 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 344 452 1.2E-33 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 SUPERFAMILY SSF58104 228 535 2.01E-60 T 13-10-2018 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 174 3.4E-23 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 Gene3D G3DSA:1.10.287.950 206 536 6.3E-61 T 13-10-2018 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 SMART SM00283 274 535 4.3E-49 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 320 6.1E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 13 6.1E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 372 399 6.1E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_1802 1021b73e92f77983f78f7a2a68ac50f5 536 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 401 430 6.1E-24 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0966 202a365bc4b88fbeafddd9f4b5a5fb96 341 Pfam PF09851 Short C-terminal domain 258 285 2.9E-7 T 13-10-2018 IPR018649 SHOCT domain SJPD1_1892 a9e8366de2de4d541a182d430b51954a 162 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 4 161 38.951 T 13-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 SJPD1_1892 a9e8366de2de4d541a182d430b51954a 162 SUPERFAMILY SSF52016 2 160 1.26E-51 T 13-10-2018 SJPD1_1892 a9e8366de2de4d541a182d430b51954a 162 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 6 158 5.8E-65 T 13-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 SJPD1_1892 a9e8366de2de4d541a182d430b51954a 162 Gene3D G3DSA:3.20.19.10 3 159 6.3E-61 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 SJPD1_1892 a9e8366de2de4d541a182d430b51954a 162 Pfam PF00694 Aconitase C-terminal domain 48 101 3.7E-21 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 SJPD1_0081 94c211c7aa0435a07c45d6bc9e55a4b2 263 Gene3D G3DSA:3.60.110.10 17 255 2.3E-40 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_0081 94c211c7aa0435a07c45d6bc9e55a4b2 263 Pfam PF00795 Carbon-nitrogen hydrolase 30 247 6.6E-15 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 SJPD1_0081 94c211c7aa0435a07c45d6bc9e55a4b2 263 SUPERFAMILY SSF56317 15 251 8.11E-35 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_0179 35e6902dd1dad9a650967dc158706320 184 Gene3D G3DSA:1.20.120.1200 4 163 5.4E-33 T 13-10-2018 SJPD1_0179 35e6902dd1dad9a650967dc158706320 184 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 20 161 7.6E-29 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1674 f4c7278ad8b6ed69dc7ca6436fa687f7 232 Gene3D G3DSA:2.40.50.100 30 160 1.8E-26 T 13-10-2018 SJPD1_1674 f4c7278ad8b6ed69dc7ca6436fa687f7 232 SUPERFAMILY SSF111369 30 226 7.32E-13 T 13-10-2018 SJPD1_1674 f4c7278ad8b6ed69dc7ca6436fa687f7 232 Gene3D G3DSA:2.40.30.170 26 217 1.8E-26 T 13-10-2018 SJPD1_1674 f4c7278ad8b6ed69dc7ca6436fa687f7 232 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 25 212 7.5E-15 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_1674 f4c7278ad8b6ed69dc7ca6436fa687f7 232 Gene3D G3DSA:1.10.287.470 64 125 1.8E-26 T 13-10-2018 SJPD1_0622 0b3dd5a53b53d7cea1e26ba45390d6a8 176 Pfam PF00213 ATP synthase delta (OSCP) subunit 5 168 1.5E-18 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0622 0b3dd5a53b53d7cea1e26ba45390d6a8 176 SUPERFAMILY SSF47928 4 98 9.02E-13 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0622 0b3dd5a53b53d7cea1e26ba45390d6a8 176 Hamap MF_01416 ATP synthase subunit delta [atpD]. 1 174 11.867 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_0622 0b3dd5a53b53d7cea1e26ba45390d6a8 176 Gene3D G3DSA:1.10.520.20 2 103 6.1E-7 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 SJPD1_2282 afecf2d1afd5c1c08b2fa537202cba67 354 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 63 75 2.3E-5 T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2282 afecf2d1afd5c1c08b2fa537202cba67 354 ProSitePatterns PS01347 MraY family signature 1. 63 75 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2282 afecf2d1afd5c1c08b2fa537202cba67 354 Pfam PF00953 Glycosyl transferase family 4 94 278 3.1E-34 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 SJPD1_2282 afecf2d1afd5c1c08b2fa537202cba67 354 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 20 352 22.7 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2282 afecf2d1afd5c1c08b2fa537202cba67 354 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 32 354 4.9E-117 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2282 afecf2d1afd5c1c08b2fa537202cba67 354 ProSitePatterns PS01348 MraY family signature 2. 183 194 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_1994 e0ad19c8d1022ce52d53ef83ab375523 62 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 61 20.851 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1994 e0ad19c8d1022ce52d53ef83ab375523 62 Gene3D G3DSA:2.30.170.40 2 62 5.0E-23 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1994 e0ad19c8d1022ce52d53ef83ab375523 62 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 4.2E-27 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_1994 e0ad19c8d1022ce52d53ef83ab375523 62 Pfam PF00830 Ribosomal L28 family 3 60 7.5E-25 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1994 e0ad19c8d1022ce52d53ef83ab375523 62 SUPERFAMILY SSF143800 1 62 1.84E-26 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1699 9697713817f115fc18c42f68606ae8d9 290 Gene3D G3DSA:3.40.50.1100 101 282 5.9E-9 T 13-10-2018 SJPD1_1699 9697713817f115fc18c42f68606ae8d9 290 PIRSF PIRSF006278 189 288 0.48 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase SJPD1_1699 9697713817f115fc18c42f68606ae8d9 290 PIRSF PIRSF006278 5 172 4.8E-14 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase SJPD1_1699 9697713817f115fc18c42f68606ae8d9 290 SUPERFAMILY SSF53686 15 283 2.69E-39 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme SJPD1_0259 5b0fc93eeae1b4aa5c11d2cfe0cb03f9 198 PIRSF PIRSF000239 1 197 1.9E-57 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 SJPD1_0259 5b0fc93eeae1b4aa5c11d2cfe0cb03f9 198 Gene3D G3DSA:3.40.30.10 1 195 1.2E-68 T 13-10-2018 SJPD1_0259 5b0fc93eeae1b4aa5c11d2cfe0cb03f9 198 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 161 191 2.5E-8 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 SJPD1_0259 5b0fc93eeae1b4aa5c11d2cfe0cb03f9 198 SUPERFAMILY SSF52833 2 195 3.42E-63 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0259 5b0fc93eeae1b4aa5c11d2cfe0cb03f9 198 Pfam PF00578 AhpC/TSA family 4 137 1.3E-30 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 SJPD1_0514 7cfd9a6be8fc418e56b2bf0d4e0b277f 136 Gene3D G3DSA:1.20.120.160 6 133 5.8E-15 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_0514 7cfd9a6be8fc418e56b2bf0d4e0b277f 136 SUPERFAMILY SSF47226 11 121 7.07E-18 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_0514 7cfd9a6be8fc418e56b2bf0d4e0b277f 136 Pfam PF01627 Hpt domain 45 100 1.3E-5 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 SJPD1_2488 87f297d14611da8449a06b947ff2a668 395 SUPERFAMILY SSF103190 265 394 9.42E-13 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily SJPD1_2488 87f297d14611da8449a06b947ff2a668 395 SMART SM00052 2 240 1.6E-19 T 13-10-2018 IPR001633 EAL domain SJPD1_2488 87f297d14611da8449a06b947ff2a668 395 Pfam PF00563 EAL domain 4 235 3.7E-53 T 13-10-2018 IPR001633 EAL domain SJPD1_2488 87f297d14611da8449a06b947ff2a668 395 SUPERFAMILY SSF141868 3 235 1.31E-57 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2488 87f297d14611da8449a06b947ff2a668 395 Gene3D G3DSA:3.20.20.450 2 228 7.3E-56 T 13-10-2018 IPR035919 EAL domain superfamily SJPD1_2398 1b8940db7f0014b93c0763b60aa47c9b 144 Pfam PF02050 Flagellar FliJ protein 17 134 1.3E-15 T 13-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 257 279 0.2 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 120 142 9.1 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 166 187 7.5 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 280 302 31.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 189 211 67.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 143 165 32.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 74 96 71.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 234 256 15.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 28 50 44.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 51 72 16.0 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00369 97 119 0.057 T 13-10-2018 IPR003591 Leucine-rich repeat, typical subtype SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SUPERFAMILY SSF52058 16 318 8.84E-61 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00365 257 282 0.58 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00365 51 82 380.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00365 97 122 130.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00365 189 210 630.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 Pfam PF13855 Leucine rich repeat 150 202 3.2E-8 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 Pfam PF13855 Leucine rich repeat 76 133 5.7E-8 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 Pfam PF13855 Leucine rich repeat 214 270 5.3E-9 T 13-10-2018 IPR001611 Leucine-rich repeat GO:0005515 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 Gene3D G3DSA:3.80.10.10 11 107 1.1E-25 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 Gene3D G3DSA:3.80.10.10 108 206 2.0E-24 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 Gene3D G3DSA:3.80.10.10 207 323 1.7E-25 T 13-10-2018 IPR032675 Leucine-rich repeat domain superfamily SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 51 70 0.52 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 280 299 27.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 166 185 5.1 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 234 253 230.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 97 116 16.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 28 47 64.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 189 208 39.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 74 93 57.0 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 SMART SM00364 257 276 6.2 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 PRINTS PR00019 Leucine-rich repeat signature 257 270 8.9E-6 T 13-10-2018 SJPD1_1224 d253f51e39c031df04230ffa445b158a 331 PRINTS PR00019 Leucine-rich repeat signature 169 182 8.9E-6 T 13-10-2018 SJPD1_1527 8a7ce55376949f4932a3dfb64d2d00a4 213 SMART SM00855 4 157 2.9E-11 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 SJPD1_1527 8a7ce55376949f4932a3dfb64d2d00a4 213 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 191 1.0E-49 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 SJPD1_1527 8a7ce55376949f4932a3dfb64d2d00a4 213 Gene3D G3DSA:3.40.50.1240 2 209 2.1E-51 T 13-10-2018 IPR029033 Histidine phosphatase superfamily SJPD1_1527 8a7ce55376949f4932a3dfb64d2d00a4 213 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 13-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 SJPD1_1527 8a7ce55376949f4932a3dfb64d2d00a4 213 PIRSF PIRSF000709 1 186 2.4E-12 T 13-10-2018 SJPD1_1527 8a7ce55376949f4932a3dfb64d2d00a4 213 SUPERFAMILY SSF53254 1 196 1.84E-49 T 13-10-2018 IPR029033 Histidine phosphatase superfamily SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 SUPERFAMILY SSF56931 108 347 3.14E-79 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 Gene3D G3DSA:2.40.230.10 103 348 1.0E-78 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 183 202 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 296 313 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 162 178 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 226 244 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 140 157 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 279 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 PRINTS PR01486 Bacterial phospholipase A1 protein signature 319 339 1.4E-35 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2840 7e6f29ece4d86fc41d2db0df420021da 348 Pfam PF02253 Phospholipase A1 110 346 1.4E-84 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 SJPD1_2647 55000994b43b44e5f72ead716e3cb4f6 565 Pfam PF03814 Potassium-transporting ATPase A subunit 11 557 5.9E-234 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 SJPD1_2647 55000994b43b44e5f72ead716e3cb4f6 565 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 7 558 3.2E-224 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 SJPD1_2647 55000994b43b44e5f72ead716e3cb4f6 565 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 559 34.034 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 SJPD1_2647 55000994b43b44e5f72ead716e3cb4f6 565 PIRSF PIRSF001294 1 561 6.6E-234 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 SJPD1_1180 2915b61a80023f8a99dcf5f34d8176f9 187 Pfam PF09335 SNARE associated Golgi protein 27 139 2.8E-14 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_1959 a09d871db76240d8ee83e2de6bce54aa 290 Pfam PF00795 Carbon-nitrogen hydrolase 3 267 7.7E-58 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 SJPD1_1959 a09d871db76240d8ee83e2de6bce54aa 290 SUPERFAMILY SSF56317 1 286 1.23E-80 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_1959 a09d871db76240d8ee83e2de6bce54aa 290 Gene3D G3DSA:3.60.110.10 1 290 3.7E-93 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 Gene3D G3DSA:2.40.420.20 291 381 3.4E-21 T 13-10-2018 SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 380 6.1E-77 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 SUPERFAMILY SSF111369 58 305 6.54E-62 T 13-10-2018 SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 300 3.3E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 Gene3D G3DSA:1.10.287.470 104 177 1.4E-68 T 13-10-2018 SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 Gene3D G3DSA:2.40.50.100 69 214 1.4E-68 T 13-10-2018 SJPD1_1340 46bd26a1d7e6077ad924e45866916807 385 Gene3D G3DSA:2.40.30.170 64 290 1.4E-68 T 13-10-2018 SJPD1_1325 afbcbc453a2e84be2ab810a0bb8ca728 395 Pfam PF00999 Sodium/hydrogen exchanger family 10 378 3.0E-41 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SJPD1_1325 afbcbc453a2e84be2ab810a0bb8ca728 395 Gene3D G3DSA:1.20.1530.20 1 389 1.7E-41 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily SJPD1_1159 fcea5f9737bc7b4548a09737de92757d 269 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 268 7.2E-116 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 SJPD1_1159 fcea5f9737bc7b4548a09737de92757d 269 Pfam PF13614 AAA domain 4 168 2.1E-22 T 13-10-2018 IPR025669 AAA domain SJPD1_1159 fcea5f9737bc7b4548a09737de92757d 269 Gene3D G3DSA:3.40.50.300 1 257 3.6E-66 T 13-10-2018 SJPD1_1159 fcea5f9737bc7b4548a09737de92757d 269 SUPERFAMILY SSF52540 1 249 1.09E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1159 fcea5f9737bc7b4548a09737de92757d 269 PIRSF PIRSF003092 1 269 1.3E-84 T 13-10-2018 IPR025501 ATP binding protein MinD SJPD1_2333 490286875c5be4d967a307c8d1a30fa5 1354 Gene3D G3DSA:3.40.50.300 30 180 1.9E-7 T 13-10-2018 SJPD1_2333 490286875c5be4d967a307c8d1a30fa5 1354 SUPERFAMILY SSF52540 11 192 7.04E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0508 5da739c1657bde4f4a1982cc28fc9cd0 790 SUPERFAMILY SSF52540 179 416 1.56E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0508 5da739c1657bde4f4a1982cc28fc9cd0 790 Pfam PF00350 Dynamin family 197 394 6.1E-29 T 13-10-2018 IPR022812 Dynamin superfamily SJPD1_1753 637bf7181330f3bdf7e2cd272077b1c6 390 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 383 1.1E-144 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SJPD1_1753 637bf7181330f3bdf7e2cd272077b1c6 390 Pfam PF06965 Na+/H+ antiporter 1 7 383 1.2E-147 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SJPD1_1753 637bf7181330f3bdf7e2cd272077b1c6 390 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 389 23.009 T 13-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 SJPD1_1753 637bf7181330f3bdf7e2cd272077b1c6 390 Gene3D G3DSA:1.20.1530.10 2 389 3.6E-147 T 13-10-2018 IPR023171 Na/H antiporter domain superfamily SJPD1_0021 c24b170a209797b23a7c8bd7108c73f4 527 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 14 148 3.6E-21 T 13-10-2018 IPR006512 YidE/YbjL duplication SJPD1_0021 c24b170a209797b23a7c8bd7108c73f4 527 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 360 511 8.4E-33 T 13-10-2018 IPR006512 YidE/YbjL duplication SJPD1_0021 c24b170a209797b23a7c8bd7108c73f4 527 Pfam PF06826 Predicted Permease Membrane Region 355 523 2.5E-37 T 13-10-2018 IPR006512 YidE/YbjL duplication SJPD1_0021 c24b170a209797b23a7c8bd7108c73f4 527 Pfam PF06826 Predicted Permease Membrane Region 9 161 2.9E-32 T 13-10-2018 IPR006512 YidE/YbjL duplication SJPD1_0021 c24b170a209797b23a7c8bd7108c73f4 527 SUPERFAMILY SSF116726 261 342 4.45E-7 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 SJPD1_1807 eb69ad8f333f7b5c30cc2d21500417ba 422 SUPERFAMILY SSF81442 23 145 2.35E-8 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_1807 eb69ad8f333f7b5c30cc2d21500417ba 422 Gene3D G3DSA:1.20.210.10 9 123 6.1E-7 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2088 c13fad179cb96c34b189955fc34532d3 363 SUPERFAMILY SSF53474 58 358 1.15E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2088 c13fad179cb96c34b189955fc34532d3 363 Gene3D G3DSA:3.40.50.1820 32 362 3.8E-103 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2053 ba6e4073a75b59a65f67f6b6131f1952 363 Pfam PF00155 Aminotransferase class I and II 25 356 4.2E-34 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_2053 ba6e4073a75b59a65f67f6b6131f1952 363 SUPERFAMILY SSF53383 3 359 4.6E-71 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2053 ba6e4073a75b59a65f67f6b6131f1952 363 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 220 229 - T 13-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 SJPD1_2053 ba6e4073a75b59a65f67f6b6131f1952 363 Gene3D G3DSA:3.90.1150.10 28 336 4.6E-84 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_2053 ba6e4073a75b59a65f67f6b6131f1952 363 Gene3D G3DSA:3.40.640.10 39 273 4.6E-84 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1334 e2abf9a7c1e95348757715e41630b6ab 246 Gene3D G3DSA:3.60.15.10 1 244 4.0E-52 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1334 e2abf9a7c1e95348757715e41630b6ab 246 SMART SM00849 36 217 9.4E-5 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1334 e2abf9a7c1e95348757715e41630b6ab 246 SUPERFAMILY SSF56281 3 226 1.19E-33 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_1334 e2abf9a7c1e95348757715e41630b6ab 246 Pfam PF12706 Beta-lactamase superfamily domain 49 217 1.5E-20 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 SUPERFAMILY SSF55120 1 244 2.88E-60 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 Gene3D G3DSA:3.30.70.660 109 242 2.3E-25 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 244 29.966 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 Gene3D G3DSA:3.30.70.580 1 108 1.0E-27 T 13-10-2018 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 Pfam PF01416 tRNA pseudouridine synthase 145 244 1.4E-11 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 Pfam PF01416 tRNA pseudouridine synthase 8 107 5.9E-6 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 239 2.5E-49 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1385 38d16594a8e1a9a530996d0f53919ccb 244 PIRSF PIRSF001430 1 244 6.4E-68 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_2474 9ca6c6448dfc230b008f8dd50d57f3f6 272 SUPERFAMILY SSF51735 1 268 9.17E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_2474 9ca6c6448dfc230b008f8dd50d57f3f6 272 Pfam PF01370 NAD dependent epimerase/dehydratase family 30 196 1.6E-11 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 SJPD1_2474 9ca6c6448dfc230b008f8dd50d57f3f6 272 Pfam PF08338 Domain of unknown function (DUF1731) 224 270 3.0E-17 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 SJPD1_2474 9ca6c6448dfc230b008f8dd50d57f3f6 272 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 266 7.8E-81 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 SJPD1_2474 9ca6c6448dfc230b008f8dd50d57f3f6 272 Gene3D G3DSA:3.40.50.720 2 271 7.1E-64 T 13-10-2018 SJPD1_2525 5887fa7ea4897b65ece0fc07daf5381f 509 Pfam PF13584 Oxygen tolerance 22 451 7.5E-64 T 13-10-2018 IPR025738 Aerotolerance-related protein BatD SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 SUPERFAMILY SSF52540 3 188 7.27E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 ProSitePatterns PS00856 Guanylate kinase-like signature. 38 55 - T 13-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 Gene3D G3DSA:3.40.50.300 8 181 4.3E-60 T 13-10-2018 SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 182 1.7E-66 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 SMART SM00072 3 186 1.0E-53 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 Pfam PF00625 Guanylate kinase 4 178 1.2E-45 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 Gene3D G3DSA:3.30.63.10 35 94 4.3E-60 T 13-10-2018 SJPD1_0523 1cea19dcb21dcb3e6e4e9d13b19e7552 205 Hamap MF_00328 Guanylate kinase [gmk]. 2 186 34.349 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 SJPD1_0303 e03ef2406ebed5b51f0b14d4df38dfbd 115 Pfam PF11756 Nitrous oxide-stimulated promoter 5 104 9.6E-13 T 13-10-2018 IPR020483 Uncharacterised protein family YgbA SJPD1_0303 e03ef2406ebed5b51f0b14d4df38dfbd 115 ProDom PD075772 YGBA ECS3588 CYTOPLASMIC UVRA STM2860 AMIDOPHOSPHORIBOSYLTRANSFERASE VVA0912 SO0324 VPA0976 CPE0229 51 104 1.0E-14 T 13-10-2018 IPR020483 Uncharacterised protein family YgbA SJPD1_0886 cd278f4458d809b94865ea9a99868fb4 121 SUPERFAMILY SSF53146 1 121 3.27E-23 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_0886 cd278f4458d809b94865ea9a99868fb4 121 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 19 105 8.0E-13 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis SJPD1_0886 cd278f4458d809b94865ea9a99868fb4 121 Gene3D G3DSA:3.30.420.130 1 108 4.6E-20 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_0256 dcd0cbaf5769b4da6fbd5fe5670c4367 268 Pfam PF02108 Flagellar assembly protein FliH 147 261 3.3E-21 T 13-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE SJPD1_0256 dcd0cbaf5769b4da6fbd5fe5670c4367 268 SUPERFAMILY SSF160527 173 261 6.93E-5 T 13-10-2018 SJPD1_2433 bdfc82bfdfc13ee1dafd211f09230e17 110 SUPERFAMILY SSF54843 3 103 1.29E-30 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2433 bdfc82bfdfc13ee1dafd211f09230e17 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 105 22.759 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2433 bdfc82bfdfc13ee1dafd211f09230e17 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 4 102 1.0E-34 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2433 bdfc82bfdfc13ee1dafd211f09230e17 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 102 2.8E-25 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 SJPD1_2433 bdfc82bfdfc13ee1dafd211f09230e17 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 78 102 - T 13-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2433 bdfc82bfdfc13ee1dafd211f09230e17 110 Gene3D G3DSA:3.90.470.10 2 110 8.0E-33 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_0858 32abe2fa68571d9e00f880719817fa2d 201 Pfam PF09335 SNARE associated Golgi protein 45 161 1.7E-27 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_1526 97e1403c8f228ea192a95968f4beaa93 240 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 240 38.228 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 SJPD1_1526 97e1403c8f228ea192a95968f4beaa93 240 Pfam PF02654 Cobalamin-5-phosphate synthase 8 234 2.3E-53 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 SJPD1_1526 97e1403c8f228ea192a95968f4beaa93 240 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 7 234 1.0E-43 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 SJPD1_2704 02363db6715824554751f22eb0579a53 126 Pfam PF04138 GtrA-like protein 8 121 9.1E-16 T 13-10-2018 IPR007267 GtrA-like protein GO:0000271|GO:0016021 SJPD1_1500 5d4b6a6d71c2af3be6a91c597faee651 187 SUPERFAMILY SSF142695 3 165 1.18E-47 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1500 5d4b6a6d71c2af3be6a91c597faee651 187 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 187 8.9E-73 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1500 5d4b6a6d71c2af3be6a91c597faee651 187 Gene3D G3DSA:3.40.50.10990 1 167 2.2E-65 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1500 5d4b6a6d71c2af3be6a91c597faee651 187 Pfam PF00925 GTP cyclohydrolase II 9 161 4.7E-57 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1500 5d4b6a6d71c2af3be6a91c597faee651 187 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 187 36.102 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_0333 94f33446a808351e53a3306bc948d2be 211 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 16 205 5.7E-73 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_0333 94f33446a808351e53a3306bc948d2be 211 SUPERFAMILY SSF55821 10 209 1.03E-71 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily SJPD1_0333 94f33446a808351e53a3306bc948d2be 211 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 206 5.4E-68 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_0333 94f33446a808351e53a3306bc948d2be 211 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 9 210 36.512 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 SJPD1_0333 94f33446a808351e53a3306bc948d2be 211 Gene3D G3DSA:3.90.870.10 2 211 1.6E-75 T 13-10-2018 SJPD1_0791 49b76524b338e86f159aec184e990a8f 392 SUPERFAMILY SSF53335 107 283 2.15E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0791 49b76524b338e86f159aec184e990a8f 392 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 107 278 6.7E-42 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 SJPD1_0791 49b76524b338e86f159aec184e990a8f 392 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 58 287 24.498 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 SJPD1_0791 49b76524b338e86f159aec184e990a8f 392 Gene3D G3DSA:3.40.50.150 96 289 8.4E-41 T 13-10-2018 SJPD1_0791 49b76524b338e86f159aec184e990a8f 392 Pfam PF02390 Putative methyltransferase 122 281 1.6E-38 T 13-10-2018 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 Gene3D G3DSA:3.40.470.10 1 224 6.5E-99 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 8 214 2.2E-81 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 7 222 40.189 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 SUPERFAMILY SSF52141 5 223 4.58E-91 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 SMART SM00986 51 211 4.5E-36 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 SMART SM00987 51 211 4.5E-36 T 13-10-2018 SJPD1_0007 253a2231a8296fcac78fdba6badc59c3 224 Pfam PF03167 Uracil DNA glycosylase superfamily 55 210 8.2E-21 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 SJPD1_0540 ea61291e00157cd40bae5d854daa0433 211 Pfam PF04028 Domain of unknown function (DUF374) 66 134 1.7E-27 T 13-10-2018 IPR007172 Domain of unknown function DUF374 SJPD1_0540 ea61291e00157cd40bae5d854daa0433 211 ProDom PD032436 LIPOPROTEIN UNCHARACTERIZED PROBABLE CJ0457C SIMILAR TRANSFERASE BACTERIA PRECURSOR SIGNAL CC0304 15 135 2.0E-26 T 13-10-2018 IPR007172 Domain of unknown function DUF374 SJPD1_1121 ee36ba3375b66662e5dc157517f337dc 283 Hamap MF_00188 Protease HtpX [htpX]. 3 278 28.154 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 SJPD1_1121 ee36ba3375b66662e5dc157517f337dc 283 Gene3D G3DSA:3.30.2010.10 58 148 1.9E-31 T 13-10-2018 SJPD1_1121 ee36ba3375b66662e5dc157517f337dc 283 Pfam PF01435 Peptidase family M48 65 278 2.4E-39 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 SJPD1_1310 3e2467171975c8b37c3c698c66424cc2 157 Gene3D G3DSA:3.10.50.40 3 156 7.5E-43 T 13-10-2018 SJPD1_1310 3e2467171975c8b37c3c698c66424cc2 157 SUPERFAMILY SSF54534 3 144 6.68E-25 T 13-10-2018 SJPD1_1310 3e2467171975c8b37c3c698c66424cc2 157 Gene3D G3DSA:2.40.10.330 70 125 7.5E-43 T 13-10-2018 SJPD1_0447 42456cde37ad8e59e34c68b229ae14b6 223 SUPERFAMILY SSF103481 3 66 4.58E-10 T 13-10-2018 SJPD1_0447 42456cde37ad8e59e34c68b229ae14b6 223 SUPERFAMILY SSF103481 111 217 6.93E-11 T 13-10-2018 SJPD1_0447 42456cde37ad8e59e34c68b229ae14b6 223 Pfam PF00892 EamA-like transporter family 3 61 1.8E-8 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0447 42456cde37ad8e59e34c68b229ae14b6 223 Pfam PF00892 EamA-like transporter family 76 213 2.0E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_0486 bf502b248f87ddcccdc4bc6223c57a5b 282 Pfam PF08376 Nitrate and nitrite sensing 53 282 3.2E-42 T 13-10-2018 IPR013587 Nitrate/nitrite sensing protein SJPD1_0281 0fb94c8d1ee72576283e3965f73efcd5 126 SMART SM01207 13 122 1.5E-12 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 SJPD1_0281 0fb94c8d1ee72576283e3965f73efcd5 126 Pfam PF02660 Glycerol-3-phosphate acyltransferase 14 119 1.7E-28 T 13-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 SJPD1_2512 756049d4a317e53b3da27d299dd3ca1f 374 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 347 7.7E-43 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 SJPD1_2512 756049d4a317e53b3da27d299dd3ca1f 374 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 44 358 4.8E-135 T 13-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC SJPD1_2256 54c00306519f71cb55910c7950fadbdd 99 Gene3D G3DSA:1.10.760.10 19 97 4.9E-17 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2256 54c00306519f71cb55910c7950fadbdd 99 SUPERFAMILY SSF46626 6 97 2.58E-16 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2256 54c00306519f71cb55910c7950fadbdd 99 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 18 93 2.1E-11 T 13-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 SJPD1_2663 da20151e4f7cf7750f1a36d2cfcab4ba 148 Gene3D G3DSA:3.90.1170.40 1 145 5.3E-45 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 SJPD1_2663 da20151e4f7cf7750f1a36d2cfcab4ba 148 Pfam PF02391 MoaE protein 18 114 2.5E-12 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 SJPD1_2663 da20151e4f7cf7750f1a36d2cfcab4ba 148 SUPERFAMILY SSF54690 17 136 1.83E-29 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 SJPD1_2307 29a82f5eaa1201d6947a2ee622bdc35b 232 Pfam PF03649 Uncharacterised protein family (UPF0014) 156 224 2.8E-23 T 13-10-2018 IPR005226 UPF0014 family SJPD1_2307 29a82f5eaa1201d6947a2ee622bdc35b 232 Pfam PF03649 Uncharacterised protein family (UPF0014) 11 150 8.6E-30 T 13-10-2018 IPR005226 UPF0014 family SJPD1_2092 244178f612f2a9b7695a2e8931aed389 178 SUPERFAMILY SSF52218 1 178 2.9E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2092 244178f612f2a9b7695a2e8931aed389 178 Gene3D G3DSA:3.40.50.360 2 178 1.8E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2092 244178f612f2a9b7695a2e8931aed389 178 Pfam PF03358 NADPH-dependent FMN reductase 4 127 5.3E-26 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SJPD1_2833 9e4801f6478a03223aca9e510999e501 75 Pfam PF11127 Protein of unknown function (DUF2892) 1 59 1.0E-18 T 13-10-2018 IPR021309 Protein of unknown function DUF2892 SJPD1_2895 507dc6f04b5a4b3ec5480d1f563a9914 234 Gene3D G3DSA:2.60.40.4070 111 200 1.0E-20 T 13-10-2018 SJPD1_2895 507dc6f04b5a4b3ec5480d1f563a9914 234 Pfam PF13860 FlgD Ig-like domain 112 189 6.3E-18 T 13-10-2018 IPR025965 FlgD Ig-like domain SJPD1_2895 507dc6f04b5a4b3ec5480d1f563a9914 234 Pfam PF03963 Flagellar hook capping protein - N-terminal region 17 85 2.9E-18 T 13-10-2018 IPR005648 Flagellar hook capping protein SJPD1_2895 507dc6f04b5a4b3ec5480d1f563a9914 234 Gene3D G3DSA:2.30.30.910 98 221 1.0E-20 T 13-10-2018 SJPD1_1591 f33003a159df9ce522acbfe5c32710f1 206 Pfam PF09335 SNARE associated Golgi protein 33 159 7.1E-20 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_0235 dea487a4e8f905a9467043945f8d7abf 244 Gene3D G3DSA:3.60.21.10 11 237 4.6E-9 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like SJPD1_0235 dea487a4e8f905a9467043945f8d7abf 244 SUPERFAMILY SSF56300 12 223 6.68E-17 T 13-10-2018 SJPD1_1779 4286fb3886cfb77c6118e1f0e38efd78 214 SUPERFAMILY SSF48452 133 196 1.64E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1779 4286fb3886cfb77c6118e1f0e38efd78 214 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 130 192 9.9E-8 T 13-10-2018 SJPD1_1779 4286fb3886cfb77c6118e1f0e38efd78 214 Gene3D G3DSA:1.25.40.10 62 211 5.1E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 Gene3D G3DSA:4.10.480.10 252 368 5.2E-44 T 13-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 38 58 5.3E-6 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 Gene3D G3DSA:3.40.50.700 68 249 6.1E-65 T 13-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PIRSF PIRSF000310 27 385 2.4E-143 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 307 320 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 237 254 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 255 273 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 183 207 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 279 305 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 92 116 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 138 161 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 69 91 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 211 234 5.5E-84 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 SUPERFAMILY SSF56770 72 334 3.36E-88 T 13-10-2018 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 25 378 4.0E-162 T 13-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 250 332 4.6E-32 T 13-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal SJPD1_1403 0af44abd0fe02d9dc7157d9c6fef7684 385 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 84 230 9.9E-29 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_2886 b91bb40dcb950bea2a9034ba7e1c017e 186 Pfam PF01765 Ribosome recycling factor 21 184 6.4E-57 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 SJPD1_2886 b91bb40dcb950bea2a9034ba7e1c017e 186 Gene3D G3DSA:3.30.1360.40 32 106 1.1E-60 T 13-10-2018 SJPD1_2886 b91bb40dcb950bea2a9034ba7e1c017e 186 SUPERFAMILY SSF55194 4 185 3.79E-64 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 SJPD1_2886 b91bb40dcb950bea2a9034ba7e1c017e 186 Gene3D G3DSA:1.10.132.20 14 183 1.1E-60 T 13-10-2018 SJPD1_2886 b91bb40dcb950bea2a9034ba7e1c017e 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 186 3.5E-71 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 SJPD1_2886 b91bb40dcb950bea2a9034ba7e1c017e 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 4 186 24.873 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 Pfam PF00581 Rhodanese-like domain 18 128 1.7E-9 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 SUPERFAMILY SSF52821 18 138 1.57E-20 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 17 310 4.4E-98 T 13-10-2018 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase GO:0016785|GO:0043828|GO:0070329 SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 SUPERFAMILY SSF52540 138 275 8.38E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 Gene3D G3DSA:3.40.50.300 136 326 2.6E-6 T 13-10-2018 SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 SMART SM00450 3 133 1.1E-8 T 13-10-2018 IPR001763 Rhodanese-like domain SJPD1_1601 dc9885d8eaca58fe5237f2546cf25c95 337 Gene3D G3DSA:3.40.250.10 3 134 9.1E-36 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily SJPD1_0084 b94ef2c1bc1d04f04fb3a36051fa5775 54 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 15 47 2.1E-7 T 13-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 SJPD1_0479 411d99d20312dcfa2bb93a269bb108cc 370 Gene3D G3DSA:2.40.440.10 116 245 5.0E-8 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like SJPD1_0479 411d99d20312dcfa2bb93a269bb108cc 370 SUPERFAMILY SSF141523 142 245 5.62E-11 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like SJPD1_0479 411d99d20312dcfa2bb93a269bb108cc 370 Pfam PF03734 L,D-transpeptidase catalytic domain 141 243 4.2E-10 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 SJPD1_2526 78733d136c95e77697b0f39c637752cb 237 Pfam PF01925 Sulfite exporter TauE/SafE 9 231 4.9E-21 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 SJPD1_2100 a410a3c377a99aa3ba4df0eccc55206c 195 Pfam PF03692 Putative zinc- or iron-chelating domain 20 108 3.5E-6 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 SUPERFAMILY SSF51735 2 253 2.34E-67 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 253 1.0E-61 T 13-10-2018 SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 2.4E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 2.4E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.4E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 2.4E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.4E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 2.4E-32 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR SJPD1_1446 adb9832fb35a163a6db92cb115a39652 255 Gene3D G3DSA:3.40.50.720 1 255 5.9E-60 T 13-10-2018 SJPD1_0828 80b911ee20d45710c62f2b7fa8ee9b45 165 SUPERFAMILY SSF52540 6 154 8.37E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0828 80b911ee20d45710c62f2b7fa8ee9b45 165 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 6 118 5.3E-24 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 SJPD1_0828 80b911ee20d45710c62f2b7fa8ee9b45 165 Gene3D G3DSA:3.40.50.300 3 165 1.4E-34 T 13-10-2018 SJPD1_0828 80b911ee20d45710c62f2b7fa8ee9b45 165 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 7 159 2.0E-33 T 13-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 SJPD1_2505 4f3143c224aa2b6e3320a5f38a417ec6 224 Pfam PF01730 UreF 37 185 5.3E-12 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 SJPD1_2505 4f3143c224aa2b6e3320a5f38a417ec6 224 Gene3D G3DSA:1.10.4190.10 3 200 2.5E-32 T 13-10-2018 IPR038277 UreF domain superfamily SJPD1_2505 4f3143c224aa2b6e3320a5f38a417ec6 224 PIRSF PIRSF009467 3 224 1.5E-31 T 13-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 SJPD1_0888 a5aeb7a5078ed174702e89870853b43d 508 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 6.3E-164 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 SJPD1_0888 a5aeb7a5078ed174702e89870853b43d 508 PIRSF PIRSF006446 2 322 3.6E-105 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 SJPD1_0888 a5aeb7a5078ed174702e89870853b43d 508 PIRSF PIRSF006446 337 508 4.5E-30 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 SJPD1_1498 f05bb81cb24813dd13e73155f1fadd75 212 SUPERFAMILY SSF48695 11 174 7.92E-24 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_1498 f05bb81cb24813dd13e73155f1fadd75 212 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 10 175 5.3E-38 T 13-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal SJPD1_1498 f05bb81cb24813dd13e73155f1fadd75 212 PIRSF PIRSF000013 3 187 3.9E-19 T 13-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 SJPD1_1498 f05bb81cb24813dd13e73155f1fadd75 212 Gene3D G3DSA:1.10.3820.10 6 183 3.5E-35 T 13-10-2018 IPR038266 NapC/NirT cytochrome c superfamily SJPD1_2179 1c414b15eaa57628e41b84069fdcdc29 236 Gene3D G3DSA:3.40.50.300 1 236 1.3E-67 T 13-10-2018 SJPD1_2179 1c414b15eaa57628e41b84069fdcdc29 236 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_2179 1c414b15eaa57628e41b84069fdcdc29 236 SUPERFAMILY SSF52540 4 233 5.99E-74 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2179 1c414b15eaa57628e41b84069fdcdc29 236 Pfam PF00005 ABC transporter 24 172 3.2E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_2179 1c414b15eaa57628e41b84069fdcdc29 236 SMART SM00382 33 228 1.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0925 98c09296a95b7a617ab2a88d2ce83809 198 Pfam PF02589 LUD domain 2 192 1.9E-35 T 13-10-2018 IPR003741 LUD domain SJPD1_2472 cf37a23756456de963e3c53a81ffcce0 171 Pfam PF06226 Protein of unknown function (DUF1007) 6 155 3.3E-27 T 13-10-2018 IPR010412 Protein of unknown function DUF1007 SJPD1_2472 cf37a23756456de963e3c53a81ffcce0 171 ProSitePatterns PS00018 EF-hand calcium-binding domain. 54 66 - T 13-10-2018 IPR018247 EF-Hand 1, calcium-binding site SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 Gene3D G3DSA:3.40.50.11220 1 124 7.5E-31 T 13-10-2018 SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 Pfam PF01890 Cobalamin synthesis G C-terminus 203 321 1.5E-23 T 13-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 Pfam PF11761 Cobalamin biosynthesis central region 134 190 6.8E-6 T 13-10-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 Pfam PF11760 Cobalamin synthesis G N-terminal 50 129 1.4E-31 T 13-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 SUPERFAMILY SSF159664 197 324 2.22E-28 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 Gene3D G3DSA:3.30.420.180 193 326 1.9E-25 T 13-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 SJPD1_1538 755c3321f7cf82cca1b4260a472129d1 330 SUPERFAMILY SSF159672 3 210 3.66E-51 T 13-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 SJPD1_0261 d5e6dfc304f4092f157daf377e6cc45e 94 Gene3D G3DSA:3.30.70.20 2 88 3.3E-23 T 13-10-2018 SJPD1_0261 d5e6dfc304f4092f157daf377e6cc45e 94 Pfam PF12838 4Fe-4S dicluster domain 9 63 4.0E-8 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0261 d5e6dfc304f4092f157daf377e6cc45e 94 SUPERFAMILY SSF54862 5 69 1.24E-15 T 13-10-2018 SJPD1_0261 d5e6dfc304f4092f157daf377e6cc45e 94 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2569 2b58bd7287cfbd247d06d0614bdbba60 148 Pfam PF01618 MotA/TolQ/ExbB proton channel family 57 141 4.8E-32 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel SJPD1_2149 72373fffeddfc589cb3e4a52ecae7117 179 SUPERFAMILY SSF54862 18 101 3.77E-20 T 13-10-2018 SJPD1_2149 72373fffeddfc589cb3e4a52ecae7117 179 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2149 72373fffeddfc589cb3e4a52ecae7117 179 Gene3D G3DSA:3.30.70.3270 18 152 5.8E-23 T 13-10-2018 SJPD1_2149 72373fffeddfc589cb3e4a52ecae7117 179 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2149 72373fffeddfc589cb3e4a52ecae7117 179 Pfam PF12838 4Fe-4S dicluster domain 40 89 1.1E-11 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2728 353d5de69dc0fe7f2d1cee33819a6790 109 Gene3D G3DSA:1.10.357.10 5 98 6.0E-22 T 13-10-2018 SJPD1_2728 353d5de69dc0fe7f2d1cee33819a6790 109 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_2728 353d5de69dc0fe7f2d1cee33819a6790 109 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.1E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_2728 353d5de69dc0fe7f2d1cee33819a6790 109 SUPERFAMILY SSF46689 12 83 9.48E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_2728 353d5de69dc0fe7f2d1cee33819a6790 109 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 1.3E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 SJPD1_1469 5825a529355675064a8cd14204f890ea 514 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 199 493 4.3E-79 T 13-10-2018 IPR013358 Pilus biogenesis, MshL SJPD1_1469 5825a529355675064a8cd14204f890ea 514 PRINTS PR00811 Bacterial general secretion pathway protein D signature 481 495 6.3E-15 T 13-10-2018 IPR001775 GspD/PilQ family SJPD1_1469 5825a529355675064a8cd14204f890ea 514 PRINTS PR00811 Bacterial general secretion pathway protein D signature 233 243 6.3E-15 T 13-10-2018 IPR001775 GspD/PilQ family SJPD1_1469 5825a529355675064a8cd14204f890ea 514 PRINTS PR00811 Bacterial general secretion pathway protein D signature 353 363 6.3E-15 T 13-10-2018 IPR001775 GspD/PilQ family SJPD1_1469 5825a529355675064a8cd14204f890ea 514 PRINTS PR00811 Bacterial general secretion pathway protein D signature 314 338 6.3E-15 T 13-10-2018 IPR001775 GspD/PilQ family SJPD1_1469 5825a529355675064a8cd14204f890ea 514 PRINTS PR00811 Bacterial general secretion pathway protein D signature 458 476 6.3E-15 T 13-10-2018 IPR001775 GspD/PilQ family SJPD1_1469 5825a529355675064a8cd14204f890ea 514 Pfam PF00263 Bacterial type II and III secretion system protein 319 493 4.5E-44 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 SJPD1_1575 ef1507122fa33ba4becfab3152cc3e13 294 Pfam PF12833 Helix-turn-helix domain 198 281 8.5E-13 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1575 ef1507122fa33ba4becfab3152cc3e13 294 SUPERFAMILY SSF46689 235 284 2.15E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 SJPD1_1575 ef1507122fa33ba4becfab3152cc3e13 294 Gene3D G3DSA:1.10.10.60 167 284 7.4E-18 T 13-10-2018 SJPD1_1575 ef1507122fa33ba4becfab3152cc3e13 294 SMART SM00342 192 281 5.1E-12 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 SJPD1_1245 5686c67ece21c5776d583385f81d022f 617 SUPERFAMILY SSF82861 333 417 7.32E-13 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 SJPD1_1245 5686c67ece21c5776d583385f81d022f 617 SUPERFAMILY SSF50182 418 485 6.21E-14 T 13-10-2018 IPR010920 LSM domain superfamily SJPD1_1245 5686c67ece21c5776d583385f81d022f 617 Gene3D G3DSA:2.30.30.60 435 484 2.3E-11 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily SJPD1_1245 5686c67ece21c5776d583385f81d022f 617 Gene3D G3DSA:3.30.70.100 488 586 3.1E-15 T 13-10-2018 SJPD1_1245 5686c67ece21c5776d583385f81d022f 617 SUPERFAMILY SSF82689 488 592 1.96E-18 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 SJPD1_1245 5686c67ece21c5776d583385f81d022f 617 Pfam PF00924 Mechanosensitive ion channel 376 582 3.4E-41 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SJPD1_2379 c43c80c48c50f089c54b82f6fa64db4a 104 SUPERFAMILY SSF54913 1 103 1.59E-37 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta SJPD1_2379 c43c80c48c50f089c54b82f6fa64db4a 104 Gene3D G3DSA:3.30.70.120 1 103 7.2E-40 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal SJPD1_2379 c43c80c48c50f089c54b82f6fa64db4a 104 Pfam PF03091 CutA1 divalent ion tolerance protein 5 102 3.3E-36 T 13-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 SJPD1_1997 51973468b4fa8b2229faa689e6a3b492 220 Gene3D G3DSA:1.10.1670.10 3 206 1.8E-90 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 SJPD1_1997 51973468b4fa8b2229faa689e6a3b492 220 SMART SM00478 39 186 2.4E-18 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 SJPD1_1997 51973468b4fa8b2229faa689e6a3b492 220 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 152 2.2E-12 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 SJPD1_1997 51973468b4fa8b2229faa689e6a3b492 220 PIRSF PIRSF001435 7 215 1.4E-37 T 13-10-2018 SJPD1_1997 51973468b4fa8b2229faa689e6a3b492 220 Gene3D G3DSA:1.10.340.30 22 140 1.8E-90 T 13-10-2018 SJPD1_1997 51973468b4fa8b2229faa689e6a3b492 220 SUPERFAMILY SSF48150 15 206 1.02E-36 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 SJPD1_2313 c472ce689073e4918dc7107723b7d56e 330 Gene3D G3DSA:3.20.20.100 1 330 1.2E-110 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2313 c472ce689073e4918dc7107723b7d56e 330 SUPERFAMILY SSF51430 1 316 1.44E-94 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2313 c472ce689073e4918dc7107723b7d56e 330 Pfam PF00248 Aldo/keto reductase family 16 310 1.0E-71 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_1338 d0e7fff463f4ddf834f110b59d32c910 257 Pfam PF01618 MotA/TolQ/ExbB proton channel family 100 217 2.9E-18 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel SJPD1_2716 35aed643de31ec89109a56ec79aa1628 89 Gene3D G3DSA:1.20.58.1000 4 89 1.1E-23 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily SJPD1_2716 35aed643de31ec89109a56ec79aa1628 89 Pfam PF02583 Metal-sensitive transcriptional repressor 7 86 3.7E-23 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 SJPD1_1848 72bad6e7b4d1dc479d51ec148c17b7f0 344 Pfam PF02625 XdhC and CoxI family 13 71 2.5E-15 T 13-10-2018 IPR003777 XdhC- CoxI SJPD1_1848 72bad6e7b4d1dc479d51ec148c17b7f0 344 Gene3D G3DSA:3.40.50.720 195 344 5.1E-46 T 13-10-2018 SJPD1_1848 72bad6e7b4d1dc479d51ec148c17b7f0 344 Pfam PF13478 XdhC Rossmann domain 196 338 2.1E-38 T 13-10-2018 IPR027051 XdhC Rossmann domain SJPD1_1123 4285534757075009fc933d34b3f8d6bf 178 Pfam PF06821 Serine hydrolase 5 173 2.2E-61 T 13-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 SJPD1_1123 4285534757075009fc933d34b3f8d6bf 178 SUPERFAMILY SSF53474 5 171 3.66E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1123 4285534757075009fc933d34b3f8d6bf 178 Gene3D G3DSA:3.40.50.1820 1 178 8.2E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_1079 77aa44e4ca19381c0ed65cb012f03904 370 Pfam PF02687 FtsX-like permease family 262 360 2.8E-9 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 SJPD1_0884 3c1d81a8fdccc934971f5c0318f0e6df 196 SUPERFAMILY SSF53146 113 191 9.42E-8 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_0884 3c1d81a8fdccc934971f5c0318f0e6df 196 Gene3D G3DSA:3.30.420.130 96 196 2.3E-7 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_0884 3c1d81a8fdccc934971f5c0318f0e6df 196 Pfam PF02001 Protein of unknown function DUF134 3 88 1.6E-14 T 13-10-2018 IPR002852 Uncharacterised protein family UPF0251 SJPD1_0711 8516fba07af1774697323119e402410a 449 Pfam PF03600 Citrate transporter 46 392 8.5E-35 T 13-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 SJPD1_2687 0b89284b3ac047f99857630038ff9fa7 102 Pfam PF11171 Protein of unknown function (DUF2958) 19 92 3.0E-15 T 13-10-2018 IPR021341 Protein of unknown function DUF2958 SJPD1_2137 ee6a6339fe269f1560e0412a40b1f079 68 SUPERFAMILY SSF52833 2 65 5.81E-7 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_2137 ee6a6339fe269f1560e0412a40b1f079 68 Pfam PF10262 Rdx family 1 64 6.2E-10 T 13-10-2018 IPR011893 Selenoprotein, Rdx-type SJPD1_2137 ee6a6339fe269f1560e0412a40b1f079 68 Gene3D G3DSA:3.40.30.10 1 67 8.8E-10 T 13-10-2018 SJPD1_2316 b09813925cb3b2cf29313f7a1e3189ac 320 PIRSF PIRSF038896 2 314 6.7E-93 T 13-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 SJPD1_2316 b09813925cb3b2cf29313f7a1e3189ac 320 SUPERFAMILY SSF56281 68 294 2.62E-37 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_2316 b09813925cb3b2cf29313f7a1e3189ac 320 Gene3D G3DSA:3.60.15.10 43 318 1.6E-82 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like SJPD1_2316 b09813925cb3b2cf29313f7a1e3189ac 320 Pfam PF12706 Beta-lactamase superfamily domain 85 278 3.7E-44 T 13-10-2018 IPR001279 Metallo-beta-lactamase SJPD1_2095 3454b2831b01afb6c2bb0c51d55ec1d2 199 Gene3D G3DSA:3.40.50.360 30 196 8.6E-56 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2095 3454b2831b01afb6c2bb0c51d55ec1d2 199 ProSitePatterns PS00201 Flavodoxin signature. 42 58 - T 13-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 SJPD1_2095 3454b2831b01afb6c2bb0c51d55ec1d2 199 SUPERFAMILY SSF52218 39 155 1.57E-22 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2095 3454b2831b01afb6c2bb0c51d55ec1d2 199 Pfam PF12682 Flavodoxin 39 193 5.6E-27 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 SJPD1_2257 51da285e60d741edb8f13853d742f34a 79 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 5 42 2.3E-9 T 13-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type SJPD1_2257 51da285e60d741edb8f13853d742f34a 79 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 5 46 4.1E-13 T 13-10-2018 IPR004714 Cytochrome oxidase maturation protein cbb3-type SJPD1_2336 29f7d2c2c59830d8de904b9b2622bc79 115 Gene3D G3DSA:1.10.10.10 3 115 2.4E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_2336 29f7d2c2c59830d8de904b9b2622bc79 115 SUPERFAMILY SSF46785 1 103 1.08E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_2336 29f7d2c2c59830d8de904b9b2622bc79 115 Pfam PF01638 HxlR-like helix-turn-helix 19 106 1.5E-24 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type SJPD1_2069 7934250a4f331e446b5d4bda5f007985 386 Pfam PF01098 Cell cycle protein 10 385 1.1E-83 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2364 462f3cc6ea0fa5d016f626983905454a 267 Pfam PF13852 Protein of unknown function (DUF4197) 43 266 3.4E-69 T 13-10-2018 IPR025245 Protein of unknown function DUF4197 SJPD1_2781 83fd63f652b8b0d45ce76c225ba7c4aa 283 Gene3D G3DSA:3.10.50.40 159 239 8.4E-77 T 13-10-2018 SJPD1_2781 83fd63f652b8b0d45ce76c225ba7c4aa 283 Gene3D G3DSA:1.10.4030.30 30 281 8.4E-77 T 13-10-2018 SJPD1_2781 83fd63f652b8b0d45ce76c225ba7c4aa 283 SUPERFAMILY SSF109998 27 176 2.16E-20 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 SMART SM00283 272 502 7.0E-27 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 8.6E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 8.6E-18 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 SMART SM00304 210 264 3.5E-6 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 Gene3D G3DSA:1.20.1480.50 169 271 1.5E-5 T 13-10-2018 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 SUPERFAMILY SSF58104 232 487 4.71E-54 T 13-10-2018 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 177 1.8E-11 T 13-10-2018 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 353 478 1.4E-36 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 Gene3D G3DSA:1.10.287.950 295 488 7.2E-44 T 13-10-2018 SJPD1_0685 00a3372c199893f2df735e1e8a55d366 604 Pfam PF13682 Chemoreceptor zinc-binding domain 496 555 1.2E-11 T 13-10-2018 IPR025991 Chemoreceptor zinc-binding domain SJPD1_0229 f2cabade5fc66d81eb6f08e7a1fa269d 221 Gene3D G3DSA:3.30.40.60 133 221 4.7E-14 T 13-10-2018 SJPD1_0229 f2cabade5fc66d81eb6f08e7a1fa269d 221 SMART SM00507 160 216 1.9E-10 T 13-10-2018 IPR003615 HNH nuclease SJPD1_0229 f2cabade5fc66d81eb6f08e7a1fa269d 221 Pfam PF01844 HNH endonuclease 173 220 9.3E-13 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 SJPD1_0448 947eec22ac0484ac469985fb8902a840 278 SUPERFAMILY SSF51430 4 277 1.1E-49 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_0448 947eec22ac0484ac469985fb8902a840 278 Gene3D G3DSA:3.20.20.100 1 278 2.9E-57 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_0448 947eec22ac0484ac469985fb8902a840 278 PRINTS PR00069 Aldo-keto reductase signature 139 156 8.1E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_0448 947eec22ac0484ac469985fb8902a840 278 PRINTS PR00069 Aldo-keto reductase signature 33 57 8.1E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_0448 947eec22ac0484ac469985fb8902a840 278 PRINTS PR00069 Aldo-keto reductase signature 213 237 8.1E-9 T 13-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 SJPD1_0448 947eec22ac0484ac469985fb8902a840 278 Pfam PF00248 Aldo/keto reductase family 17 277 4.1E-25 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_1116 9c23741f33707e41c7b644f55a72a834 122 Pfam PF01934 Protein of unknown function DUF86 31 116 2.4E-14 T 13-10-2018 IPR008201 Protein of unknown function DUF86 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR00701 60kDa inner membrane protein signature 482 505 2.6E-40 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR00701 60kDa inner membrane protein signature 398 421 2.6E-40 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR00701 60kDa inner membrane protein signature 445 467 2.6E-40 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR00701 60kDa inner membrane protein signature 7 28 2.6E-40 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR00701 60kDa inner membrane protein signature 307 327 2.6E-40 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 9 518 20.902 T 13-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR01900 YidC translocation/secretion protein signature 451 466 2.0E-27 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR01900 YidC translocation/secretion protein signature 322 338 2.0E-27 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 PRINTS PR01900 YidC translocation/secretion protein signature 471 495 2.0E-27 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 Pfam PF14849 YidC periplasmic domain 236 325 2.3E-9 T 13-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 8 335 2.5E-41 T 13-10-2018 IPR028053 Membrane insertase YidC, N-terminal SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 336 516 9.1E-69 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1756 c53e58e2edc56e69e5225580d53442cc 529 Pfam PF02096 60Kd inner membrane protein 337 516 5.1E-62 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 SJPD1_1730 7fe7203e735c9382e457ce4c71c0e844 260 SUPERFAMILY SSF55073 117 258 1.26E-27 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_1730 7fe7203e735c9382e457ce4c71c0e844 260 Gene3D G3DSA:3.30.70.270 99 260 2.9E-33 T 13-10-2018 SJPD1_1730 7fe7203e735c9382e457ce4c71c0e844 260 Pfam PF00990 Diguanylate cyclase, GGDEF domain 113 258 2.6E-27 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1730 7fe7203e735c9382e457ce4c71c0e844 260 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 109 258 7.2E-28 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1730 7fe7203e735c9382e457ce4c71c0e844 260 SMART SM00267 101 260 1.1E-16 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1685 9445424069a93fb8456faec50a6d5f9c 141 Pfam PF04186 FxsA cytoplasmic membrane protein 4 103 1.4E-17 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 SJPD1_1220 9e5adfa9cf5f90dc621f32e10133c706 124 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 4 21 - T 13-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 SJPD1_1220 9e5adfa9cf5f90dc621f32e10133c706 124 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 2 104 2.8E-26 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 SJPD1_1220 9e5adfa9cf5f90dc621f32e10133c706 124 PIRSF PIRSF003230 1 124 2.4E-34 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 SJPD1_1220 9e5adfa9cf5f90dc621f32e10133c706 124 SUPERFAMILY SSF54637 2 122 1.5E-29 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_1220 9e5adfa9cf5f90dc621f32e10133c706 124 Pfam PF03061 Thioesterase superfamily 13 93 1.4E-16 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 SJPD1_1220 9e5adfa9cf5f90dc621f32e10133c706 124 Gene3D G3DSA:3.10.129.10 1 120 1.9E-31 T 13-10-2018 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 4 79 22.434 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 ProSitePatterns PS00056 Ribosomal protein S17 signature. 55 67 - T 13-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 Pfam PF00366 Ribosomal protein S17 9 74 1.4E-29 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 4 70 7.0E-18 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 Gene3D G3DSA:2.40.50.140 3 83 6.5E-30 T 13-10-2018 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 PRINTS PR00973 Ribosomal protein S17 family signature 55 65 1.2E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 PRINTS PR00973 Ribosomal protein S17 family signature 65 72 1.2E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 PRINTS PR00973 Ribosomal protein S17 family signature 23 46 1.2E-11 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 SUPERFAMILY SSF50249 4 79 4.71E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold SJPD1_2429 0b04ac66e436f6b01df85dd3f4e89908 83 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 4 74 8.6E-33 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 SJPD1_2182 4825dec4206f27320038e64bedc91354 263 Pfam PF02582 Uncharacterised ACR, YagE family COG1723 97 215 1.5E-18 T 13-10-2018 IPR003734 Domain of unknown function DUF155 SJPD1_1869 c4d262669e99ea3dc61b6e3eed073aee 206 PIRSF PIRSF006324 1 206 2.6E-57 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_1869 c4d262669e99ea3dc61b6e3eed073aee 206 Pfam PF01810 LysE type translocator 16 203 1.5E-34 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_2117 8a9445ef2240ab62da539b397a0aa094 191 SUPERFAMILY SSF53448 4 47 3.47E-7 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2117 8a9445ef2240ab62da539b397a0aa094 191 Gene3D G3DSA:3.90.550.10 2 115 1.4E-5 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2744 765c97109d695eaa93064300ca3a16c7 167 Pfam PF03358 NADPH-dependent FMN reductase 3 145 5.2E-23 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SJPD1_2744 765c97109d695eaa93064300ca3a16c7 167 SUPERFAMILY SSF52218 3 151 2.95E-24 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2744 765c97109d695eaa93064300ca3a16c7 167 Gene3D G3DSA:3.40.50.360 2 167 1.2E-26 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 SMART SM00387 253 360 4.4E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 Gene3D G3DSA:3.30.565.10 205 358 2.3E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 SMART SM00388 148 210 0.0091 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 Gene3D G3DSA:1.10.287.130 139 204 4.6E-8 T 13-10-2018 SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 SUPERFAMILY SSF55874 212 356 2.1E-27 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 SUPERFAMILY SSF47384 141 206 2.35E-7 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 SJPD1_0313 4408760ae36fa5c34fa1d18d0a471d28 376 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 257 359 2.0E-14 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase SJPD1_2583 e4c8a04b8d4d874b164d6d621d210534 299 Gene3D G3DSA:1.20.950.20 86 298 1.3E-52 T 13-10-2018 SJPD1_2583 e4c8a04b8d4d874b164d6d621d210534 299 SUPERFAMILY SSF81342 87 297 1.41E-37 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 SJPD1_2583 e4c8a04b8d4d874b164d6d621d210534 299 Pfam PF01292 Prokaryotic cytochrome b561 94 275 3.8E-16 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 SJPD1_2583 e4c8a04b8d4d874b164d6d621d210534 299 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 91 293 5.7E-63 T 13-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 SJPD1_2196 ad63a02ad6ea2fa5903b87308cd47e22 287 Gene3D G3DSA:1.10.443.10 116 280 2.6E-16 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_2196 ad63a02ad6ea2fa5903b87308cd47e22 287 Pfam PF00589 Phage integrase family 117 260 3.0E-6 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_2196 ad63a02ad6ea2fa5903b87308cd47e22 287 Gene3D G3DSA:1.10.150.130 4 115 2.0E-16 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal SJPD1_2196 ad63a02ad6ea2fa5903b87308cd47e22 287 SUPERFAMILY SSF56349 8 277 5.89E-38 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_2196 ad63a02ad6ea2fa5903b87308cd47e22 287 Pfam PF13102 Phage integrase SAM-like domain 19 101 2.6E-8 T 13-10-2018 IPR025269 Phage integrase SAM-like domain SJPD1_1528 7f42523a49fbd4ca8284beae0eafdb37 300 Gene3D G3DSA:3.40.50.1400 140 262 1.1E-97 T 13-10-2018 SJPD1_1528 7f42523a49fbd4ca8284beae0eafdb37 300 Gene3D G3DSA:3.40.50.1400 29 281 1.1E-97 T 13-10-2018 SJPD1_1528 7f42523a49fbd4ca8284beae0eafdb37 300 PIRSF PIRSF033579 27 294 2.1E-100 T 13-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 SJPD1_1528 7f42523a49fbd4ca8284beae0eafdb37 300 SUPERFAMILY SSF53800 28 282 1.11E-78 T 13-10-2018 SJPD1_1528 7f42523a49fbd4ca8284beae0eafdb37 300 Pfam PF06180 Cobalt chelatase (CbiK) 29 282 1.0E-94 T 13-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 2 149 1.2E-28 T 13-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 PIRSF PIRSF500210 1 278 9.3E-87 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 SUPERFAMILY SSF56655 3 277 8.98E-68 T 13-10-2018 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 PIRSF PIRSF000904 1 278 1.3E-87 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 1 278 29.163 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 107 125 8.5E-17 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 250 274 8.5E-17 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 187 207 8.5E-17 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 PRINTS PR01958 Sedoheptulose-1,7-bisphosphatase family signature 37 52 8.5E-17 T 13-10-2018 IPR023079 Sedoheptulose-1,7-bisphosphatase GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 Gene3D G3DSA:3.30.540.10 1 151 3.4E-33 T 13-10-2018 SJPD1_0827 41e42066fa047accdd409789b0a22ad4 278 Gene3D G3DSA:3.40.190.80 152 278 1.3E-41 T 13-10-2018 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 Gene3D G3DSA:3.40.50.1980 166 437 1.3E-119 T 13-10-2018 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 Gene3D G3DSA:3.40.50.1980 14 430 1.3E-119 T 13-10-2018 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 Gene3D G3DSA:1.20.89.10 271 451 1.3E-119 T 13-10-2018 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 ProSitePatterns PS00090 Nitrogenases component 1 alpha and beta subunits signature 2. 102 116 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 Gene3D G3DSA:3.40.50.1980 20 165 1.3E-119 T 13-10-2018 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 TIGRFAM TIGR02931 anfK_nitrog: Fe-only nitrogenase, beta subunit 2 464 7.9E-273 T 13-10-2018 IPR014280 Nitrogenase iron-iron, beta subunit GO:0009399|GO:0016163 KEGG: 00625+1.18.6.1|KEGG: 00910+1.18.6.1 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 SUPERFAMILY SSF53807 9 459 8.5E-131 T 13-10-2018 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 Pfam PF00148 Nitrogenase component 1 type Oxidoreductase 20 447 1.2E-117 T 13-10-2018 IPR000510 Nitrogenase/oxidoreductase, component 1 GO:0016491|GO:0055114 SJPD1_1621 a06a30d4eb18c4e518ee69d2ff6baeff 464 ProSitePatterns PS00699 Nitrogenases component 1 alpha and beta subunits signature 1. 38 45 - T 13-10-2018 IPR000318 Nitrogenase component 1, conserved site GO:0009399|GO:0016163 SJPD1_2698 c9233be44305dc8b7db27d46ea8d960a 413 Pfam PF13173 AAA domain 33 155 8.3E-28 T 13-10-2018 SJPD1_2698 c9233be44305dc8b7db27d46ea8d960a 413 SUPERFAMILY SSF52540 32 238 1.87E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2698 c9233be44305dc8b7db27d46ea8d960a 413 Gene3D G3DSA:3.40.50.300 8 145 1.1E-5 T 13-10-2018 SJPD1_2698 c9233be44305dc8b7db27d46ea8d960a 413 SMART SM00382 31 157 4.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0903 a8155039870843035d2199f44f74a73a 196 Pfam PF09626 Dihaem cytochrome c 144 195 9.5E-5 T 13-10-2018 IPR018588 Dihaem cytochrome c SJPD1_0903 a8155039870843035d2199f44f74a73a 196 SUPERFAMILY SSF46626 127 191 4.3E-6 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_2598 ac54c6053beaf8eced209bbf12969f26 70 Pfam PF09360 Iron-binding zinc finger CDGSH type 45 68 2.3E-10 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 SJPD1_2598 ac54c6053beaf8eced209bbf12969f26 70 Pfam PF09360 Iron-binding zinc finger CDGSH type 10 33 2.7E-7 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 SJPD1_2598 ac54c6053beaf8eced209bbf12969f26 70 Gene3D G3DSA:3.40.5.90 1 70 7.6E-28 T 13-10-2018 SJPD1_2598 ac54c6053beaf8eced209bbf12969f26 70 SMART SM00704 39 70 0.0081 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 SJPD1_2598 ac54c6053beaf8eced209bbf12969f26 70 SMART SM00704 1 38 6.4E-5 T 13-10-2018 IPR018967 Iron sulphur-containing domain, CDGSH-type GO:0043231|GO:0051537 SJPD1_2537 da1005ebbc2d7eab0ba2ee9745c20549 153 Pfam PF03733 Inner membrane component domain 76 126 8.1E-18 T 13-10-2018 IPR005185 Inner membrane component domain SJPD1_2537 da1005ebbc2d7eab0ba2ee9745c20549 153 Pfam PF03733 Inner membrane component domain 4 54 4.0E-14 T 13-10-2018 IPR005185 Inner membrane component domain SJPD1_2537 da1005ebbc2d7eab0ba2ee9745c20549 153 PIRSF PIRSF028777 1 138 4.4E-49 T 13-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 Pfam PF02040 Arsenical pump membrane protein 3 416 6.0E-131 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 2 416 1.7E-153 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 359 384 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 392 416 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_1897 a10832c502c3bbfaf9d52a58d36da530 417 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 3.7E-74 T 13-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 SJPD1_0695 3edc29c5f1f10a670e4a70eb7e766a5e 317 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 152 313 7.1E-41 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0695 3edc29c5f1f10a670e4a70eb7e766a5e 317 SMART SM00267 145 316 3.0E-47 T 13-10-2018 IPR000160 GGDEF domain SJPD1_0695 3edc29c5f1f10a670e4a70eb7e766a5e 317 Gene3D G3DSA:3.30.70.270 149 316 4.7E-48 T 13-10-2018 SJPD1_0695 3edc29c5f1f10a670e4a70eb7e766a5e 317 SUPERFAMILY SSF55073 161 314 9.42E-43 T 13-10-2018 IPR029787 Nucleotide cyclase SJPD1_0695 3edc29c5f1f10a670e4a70eb7e766a5e 317 Pfam PF00990 Diguanylate cyclase, GGDEF domain 157 311 5.0E-39 T 13-10-2018 IPR000160 GGDEF domain SJPD1_1499 5de2a99479e181abf730689cdbef77e6 569 Pfam PF00890 FAD binding domain 81 530 5.6E-42 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1499 5de2a99479e181abf730689cdbef77e6 569 SUPERFAMILY SSF56425 338 498 2.01E-24 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 SJPD1_1499 5de2a99479e181abf730689cdbef77e6 569 SUPERFAMILY SSF51905 71 557 1.75E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily SJPD1_1711 bfb2f89006b197f780d526a104060109 312 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 218 302 5.7E-10 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 SJPD1_1711 bfb2f89006b197f780d526a104060109 312 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 27 208 2.7E-37 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 SJPD1_1711 bfb2f89006b197f780d526a104060109 312 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 3 309 24.501 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 SJPD1_1711 bfb2f89006b197f780d526a104060109 312 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 26 207 5.0E-30 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 SJPD1_1297 119801826f0bb8b00f98d45ed08db1fe 279 Gene3D G3DSA:3.40.190.10 108 221 3.1E-62 T 13-10-2018 SJPD1_1297 119801826f0bb8b00f98d45ed08db1fe 279 Pfam PF12849 PBP superfamily domain 34 210 1.5E-14 T 13-10-2018 IPR024370 PBP domain SJPD1_1297 119801826f0bb8b00f98d45ed08db1fe 279 SUPERFAMILY SSF53850 37 260 1.63E-18 T 13-10-2018 SJPD1_1297 119801826f0bb8b00f98d45ed08db1fe 279 Gene3D G3DSA:3.40.190.10 36 255 3.1E-62 T 13-10-2018 SJPD1_0980 5743798fbda929a5602e865c22ac7f39 350 Gene3D G3DSA:3.40.50.1820 76 261 3.0E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0980 5743798fbda929a5602e865c22ac7f39 350 SUPERFAMILY SSF53474 37 305 4.52E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0980 5743798fbda929a5602e865c22ac7f39 350 Pfam PF01764 Lipase (class 3) 127 250 1.4E-23 T 13-10-2018 IPR002921 Fungal lipase-like domain GO:0006629 Reactome: R-HSA-426048 SJPD1_2470 e367039b0853327e1929756e6863d687 248 Pfam PF03824 High-affinity nickel-transport protein 38 140 1.8E-15 T 13-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 SJPD1_2762 9617035d9d104ae1a718e20488984c03 131 SUPERFAMILY SSF102712 1 127 1.23E-30 T 13-10-2018 SJPD1_2762 9617035d9d104ae1a718e20488984c03 131 Pfam PF14464 Prokaryotic homologs of the JAB domain 5 113 1.1E-25 T 13-10-2018 IPR028090 JAB domain, prokaryotic SJPD1_2762 9617035d9d104ae1a718e20488984c03 131 SMART SM00232 1 128 1.3E-13 T 13-10-2018 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 SJPD1_2762 9617035d9d104ae1a718e20488984c03 131 Gene3D G3DSA:3.40.140.10 1 131 3.0E-40 T 13-10-2018 SJPD1_1074 6bc7bb73b77b1a9f38e2159eb2257cd9 897 Pfam PF01578 Cytochrome C assembly protein 655 859 5.0E-40 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 SJPD1_1074 6bc7bb73b77b1a9f38e2159eb2257cd9 897 Pfam PF05140 ResB-like family 73 118 3.2E-6 T 13-10-2018 IPR007816 ResB-like domain SJPD1_1074 6bc7bb73b77b1a9f38e2159eb2257cd9 897 Pfam PF05140 ResB-like family 205 285 2.2E-16 T 13-10-2018 IPR007816 ResB-like domain SJPD1_1243 6a9a1526824f56334ad703bcf96627df 311 Gene3D G3DSA:3.20.20.330 1 308 3.8E-112 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 SJPD1_1243 6a9a1526824f56334ad703bcf96627df 311 PIRSF PIRSF037505 2 162 1.0E-9 T 13-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 SJPD1_1243 6a9a1526824f56334ad703bcf96627df 311 PIRSF PIRSF037505 255 310 0.35 T 13-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 SJPD1_1243 6a9a1526824f56334ad703bcf96627df 311 SUPERFAMILY SSF82282 2 310 1.05E-85 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 SJPD1_1243 6a9a1526824f56334ad703bcf96627df 311 Pfam PF02574 Homocysteine S-methyltransferase 14 308 8.5E-80 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 SJPD1_0057 f15c66e27a121ce2dd273886c6f13a42 261 Pfam PF14297 Domain of unknown function (DUF4373) 10 94 8.3E-17 T 13-10-2018 IPR025400 Domain of unknown function DUF4373 SJPD1_1114 7293f7f9a1870e94dfe672d3733e682e 203 SMART SM00479 30 203 5.5E-29 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III SJPD1_1114 7293f7f9a1870e94dfe672d3733e682e 203 Pfam PF00929 Exonuclease 32 192 9.7E-23 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III SJPD1_1114 7293f7f9a1870e94dfe672d3733e682e 203 SUPERFAMILY SSF53098 31 199 4.95E-39 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_1114 7293f7f9a1870e94dfe672d3733e682e 203 Gene3D G3DSA:3.30.420.10 25 200 1.7E-36 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_2715 0c7c2c8096138b9400f1f4969ab1da8b 73 Pfam PF09851 Short C-terminal domain 45 71 4.3E-7 T 13-10-2018 IPR018649 SHOCT domain SJPD1_0842 154888a255756f750f3d814ffc113b72 284 Pfam PF02754 Cysteine-rich domain 145 235 7.7E-16 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_0842 154888a255756f750f3d814ffc113b72 284 Pfam PF02754 Cysteine-rich domain 6 87 1.8E-12 T 13-10-2018 IPR004017 Cysteine-rich domain SJPD1_2819 08553b293810802a42372d9ed022821b 201 Gene3D G3DSA:3.40.50.150 4 201 1.4E-35 T 13-10-2018 SJPD1_2819 08553b293810802a42372d9ed022821b 201 SUPERFAMILY SSF53335 3 173 1.29E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_2819 08553b293810802a42372d9ed022821b 201 Pfam PF13649 Methyltransferase domain 37 128 7.9E-10 T 13-10-2018 SJPD1_2051 6f477affaf55eec1a7ef049eb0e71734 404 SUPERFAMILY SSF56601 206 336 7.97E-20 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like SJPD1_2051 6f477affaf55eec1a7ef049eb0e71734 404 Pfam PF00912 Transglycosylase 49 224 1.4E-61 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2051 6f477affaf55eec1a7ef049eb0e71734 404 Gene3D G3DSA:3.40.710.10 238 388 5.2E-16 T 13-10-2018 SJPD1_2051 6f477affaf55eec1a7ef049eb0e71734 404 Gene3D G3DSA:1.10.3810.10 42 237 4.7E-73 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2051 6f477affaf55eec1a7ef049eb0e71734 404 SUPERFAMILY SSF53955 36 245 3.94E-73 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily SJPD1_1184 6e74632b84a82663bdbf331e61aeeefb 717 SUPERFAMILY SSF50969 29 276 2.9E-18 T 13-10-2018 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like SJPD1_1184 6e74632b84a82663bdbf331e61aeeefb 717 Gene3D G3DSA:2.130.10.10 68 349 1.3E-12 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 SJPD1_0992 69bd7703f983444cf89eef85eff8cee9 147 SUPERFAMILY SSF160387 51 143 6.28E-10 T 13-10-2018 SJPD1_0992 69bd7703f983444cf89eef85eff8cee9 147 Pfam PF05573 NosL 16 105 1.9E-5 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL SJPD1_0320 42cf4e722d517827325ca292185df0c9 125 Pfam PF02472 Biopolymer transport protein ExbD/TolR 7 124 3.8E-22 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 SJPD1_0320 42cf4e722d517827325ca292185df0c9 125 Gene3D G3DSA:3.30.420.270 56 121 1.2E-7 T 13-10-2018 SJPD1_1026 7660b32fd783efe5d2b3ae274e163d34 396 Gene3D G3DSA:2.40.160.10 70 317 2.9E-7 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_1026 7660b32fd783efe5d2b3ae274e163d34 396 SUPERFAMILY SSF56935 34 396 3.36E-8 T 13-10-2018 SJPD1_2312 b1d081580f4cb98ca048715f09574ae0 147 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 17 145 1.7E-43 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 SJPD1_2312 b1d081580f4cb98ca048715f09574ae0 147 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 146 26.559 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 PRINTS PR00762 Chloride channel signature 103 122 1.1E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 PRINTS PR00762 Chloride channel signature 323 343 1.1E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 PRINTS PR00762 Chloride channel signature 351 367 1.1E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 PRINTS PR00762 Chloride channel signature 154 173 1.1E-19 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 Pfam PF00654 Voltage gated chloride channel 62 400 1.7E-72 T 13-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 SUPERFAMILY SSF81340 6 409 6.8E-81 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 SJPD1_2376 f5a5262949bf9643a7efb8f99fc13cbc 465 Gene3D G3DSA:1.10.3080.10 5 418 4.4E-70 T 13-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 SJPD1_1107 23293cd9e2db8b55fb1522fed3bdf3c3 169 Pfam PF02915 Rubrerythrin 5 140 1.3E-14 T 13-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 SJPD1_1107 23293cd9e2db8b55fb1522fed3bdf3c3 169 SUPERFAMILY SSF47240 1 148 2.03E-23 T 13-10-2018 IPR009078 Ferritin-like superfamily SJPD1_1107 23293cd9e2db8b55fb1522fed3bdf3c3 169 Gene3D G3DSA:1.20.1260.10 1 144 9.1E-30 T 13-10-2018 IPR012347 Ferritin-like SJPD1_0364 e842f2aca3141d526e056eda10aa78f2 146 PIRSF PIRSF028687 1 146 3.4E-29 T 13-10-2018 IPR007293 Flagellar protein FlgP SJPD1_2588 7682eadda2790da94927b5cebb711448 560 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 458 469 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2588 7682eadda2790da94927b5cebb711448 560 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 241 252 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_2588 7682eadda2790da94927b5cebb711448 560 Gene3D G3DSA:3.30.70.20 401 495 3.3E-9 T 13-10-2018 SJPD1_2588 7682eadda2790da94927b5cebb711448 560 Pfam PF12838 4Fe-4S dicluster domain 213 255 1.1E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_2588 7682eadda2790da94927b5cebb711448 560 SUPERFAMILY SSF54862 158 522 3.16E-27 T 13-10-2018 SJPD1_2588 7682eadda2790da94927b5cebb711448 560 Gene3D G3DSA:3.30.70.20 199 270 6.1E-10 T 13-10-2018 SJPD1_1204 4226b8d9cfcf7987f95f36abca78da74 179 Gene3D G3DSA:2.40.128.110 26 179 1.4E-26 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily SJPD1_1204 4226b8d9cfcf7987f95f36abca78da74 179 SMART SM00867 23 177 0.0016 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like SJPD1_1204 4226b8d9cfcf7987f95f36abca78da74 179 Pfam PF04264 YceI-like domain 46 175 8.5E-15 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like SJPD1_1204 4226b8d9cfcf7987f95f36abca78da74 179 SUPERFAMILY SSF101874 27 178 3.4E-22 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 Gene3D G3DSA:3.40.50.1400 157 296 5.1E-87 T 13-10-2018 SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 ProSitePatterns PS00534 Ferrochelatase signature. 184 202 - T 13-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 SUPERFAMILY SSF53800 4 311 2.78E-82 T 13-10-2018 SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 Pfam PF00762 Ferrochelatase 4 311 4.5E-94 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 TIGRFAM TIGR00109 hemH: ferrochelatase 3 311 1.8E-89 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 Hamap MF_00323 Ferrochelatase [hemH]. 2 312 30.288 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 SJPD1_2064 098f8e32eeb4046efb425e2bf709da69 312 Gene3D G3DSA:3.40.50.1400 5 311 5.1E-87 T 13-10-2018 SJPD1_0186 af98d57112094df059f99158f8ae6252 298 Gene3D G3DSA:1.10.20.140 110 180 7.4E-66 T 13-10-2018 SJPD1_0186 af98d57112094df059f99158f8ae6252 298 SUPERFAMILY SSF52540 4 133 6.93E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0186 af98d57112094df059f99158f8ae6252 298 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 3 293 21.067 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 SJPD1_0186 af98d57112094df059f99158f8ae6252 298 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 4 277 8.5E-69 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 SJPD1_0186 af98d57112094df059f99158f8ae6252 298 Gene3D G3DSA:3.40.50.300 7 272 7.4E-66 T 13-10-2018 SJPD1_0186 af98d57112094df059f99158f8ae6252 298 Pfam PF01715 IPP transferase 37 275 2.2E-52 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 SJPD1_0424 f45c1dcb24653da4e9dad9e92b8d927c 260 Gene3D G3DSA:3.40.50.300 2 253 6.2E-58 T 13-10-2018 SJPD1_0424 f45c1dcb24653da4e9dad9e92b8d927c 260 SUPERFAMILY SSF52540 4 252 5.13E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0424 f45c1dcb24653da4e9dad9e92b8d927c 260 SMART SM00382 30 229 3.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0424 f45c1dcb24653da4e9dad9e92b8d927c 260 Pfam PF00005 ABC transporter 22 181 5.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0426 2482f292c30059400ff253a91d76166c 80 Gene3D G3DSA:1.20.5.170 13 80 4.5E-5 T 13-10-2018 SJPD1_1386 7f742ed20e6f6e46c0787651274fc17a 341 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 331 1.2E-34 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 SJPD1_2199 c08dbc152d0803a0ca965e891e739313 142 SUPERFAMILY SSF117782 85 142 3.79E-5 T 13-10-2018 IPR035439 UPF0145 domain superfamily SJPD1_2242 0de6c12e8188744a242578ec2585f292 262 Gene3D G3DSA:3.30.420.10 2 212 5.5E-24 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_2242 0de6c12e8188744a242578ec2585f292 262 SUPERFAMILY SSF53098 2 221 7.59E-41 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_2242 0de6c12e8188744a242578ec2585f292 262 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 43 244 2.2E-73 T 13-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like SJPD1_1269 32c82bd6e599b7570f32bb5f57cf5c16 291 SUPERFAMILY SSF103481 190 289 2.88E-5 T 13-10-2018 SJPD1_1269 32c82bd6e599b7570f32bb5f57cf5c16 291 Pfam PF00892 EamA-like transporter family 154 290 9.1E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1269 32c82bd6e599b7570f32bb5f57cf5c16 291 Pfam PF00892 EamA-like transporter family 7 139 4.4E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_1269 32c82bd6e599b7570f32bb5f57cf5c16 291 SUPERFAMILY SSF103481 40 141 7.72E-13 T 13-10-2018 SJPD1_2894 9f53da547610619b16e6ff4f6c12242d 541 Gene3D G3DSA:3.30.750.140 406 517 2.8E-8 T 13-10-2018 IPR038610 FliK-like, C-terminal domain superfamily SJPD1_2894 9f53da547610619b16e6ff4f6c12242d 541 Pfam PF02120 Flagellar hook-length control protein FliK 427 506 3.0E-11 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal SJPD1_2478 d9baa429248d788efde072d0ddfae876 395 Pfam PF02687 FtsX-like permease family 287 387 7.6E-14 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 SJPD1_0140 9d468adece958355213609dc90d880f4 132 SUPERFAMILY SSF54637 2 130 5.1E-26 T 13-10-2018 IPR029069 HotDog domain superfamily SJPD1_0140 9d468adece958355213609dc90d880f4 132 Gene3D G3DSA:3.10.129.10 1 132 3.5E-33 T 13-10-2018 SJPD1_0140 9d468adece958355213609dc90d880f4 132 Pfam PF03061 Thioesterase superfamily 45 117 1.8E-10 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 SJPD1_0140 9d468adece958355213609dc90d880f4 132 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 14 125 2.2E-23 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 SJPD1_0423 ddc3cd8102dd0f149325e8b69d6d40d0 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 30 292 5.8E-38 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 SJPD1_0621 d831657bcaccf767c3308891fa87e70f 171 Hamap MF_01398 ATP synthase subunit b [atpF]. 20 159 9.664 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SJPD1_0621 d831657bcaccf767c3308891fa87e70f 171 Pfam PF00430 ATP synthase B/B' CF(0) 31 137 1.4E-11 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SJPD1_1966 47e748449b24cee9579ceb059406f708 312 Gene3D G3DSA:2.60.120.1440 98 234 2.3E-24 T 13-10-2018 SJPD1_1966 47e748449b24cee9579ceb059406f708 312 PIRSF PIRSF018266 2 312 3.4E-62 T 13-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component SJPD1_1966 47e748449b24cee9579ceb059406f708 312 Pfam PF04773 FecR protein 110 200 1.1E-19 T 13-10-2018 IPR006860 FecR protein SJPD1_2372 b5f2abdb34ad37f69d9b605cbbde21d5 96 Gene3D G3DSA:3.30.70.1060 1 88 4.0E-5 T 13-10-2018 SJPD1_2372 b5f2abdb34ad37f69d9b605cbbde21d5 96 Pfam PF03795 YCII-related domain 3 82 9.0E-12 T 13-10-2018 IPR005545 YCII-related SJPD1_2372 b5f2abdb34ad37f69d9b605cbbde21d5 96 SUPERFAMILY SSF54909 1 84 8.04E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel SJPD1_2260 deecfa53bee082a4894751ec2bbb84c1 294 SUPERFAMILY SSF103481 188 289 2.62E-16 T 13-10-2018 SJPD1_2260 deecfa53bee082a4894751ec2bbb84c1 294 SUPERFAMILY SSF103481 42 139 6.02E-14 T 13-10-2018 SJPD1_2260 deecfa53bee082a4894751ec2bbb84c1 294 Pfam PF00892 EamA-like transporter family 151 288 1.1E-24 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2260 deecfa53bee082a4894751ec2bbb84c1 294 Pfam PF00892 EamA-like transporter family 4 136 2.3E-23 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 SJPD1_2480 4badf5bb26ef4572a2bbc397d73d7c76 207 PIRSF PIRSF006324 1 206 6.1E-48 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_2480 4badf5bb26ef4572a2bbc397d73d7c76 207 Pfam PF01810 LysE type translocator 15 200 2.5E-28 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_2708 6757facb9bad603b04aa57a4f1ba9091 190 Gene3D G3DSA:1.20.144.10 91 186 3.1E-15 T 13-10-2018 SJPD1_2708 6757facb9bad603b04aa57a4f1ba9091 190 Pfam PF01569 PAP2 superfamily 61 171 6.2E-14 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SJPD1_2708 6757facb9bad603b04aa57a4f1ba9091 190 SMART SM00014 59 168 3.1E-7 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase SJPD1_2708 6757facb9bad603b04aa57a4f1ba9091 190 SUPERFAMILY SSF48317 7 177 2.62E-27 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily SJPD1_1574 24c180c88f6fd78f412a5f10f1c30f24 244 Pfam PF06629 MltA-interacting protein MipA 26 244 5.1E-45 T 13-10-2018 IPR010583 MltA-interacting MipA SJPD1_1935 59ee8a41469c0d37c0077a4f551209d8 107 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 7 102 8.1E-20 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD SJPD1_1935 59ee8a41469c0d37c0077a4f551209d8 107 PIRSF PIRSF003203 1 107 1.1E-34 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD SJPD1_1975 fcbce10f76f971a75e9e632a8bcc55f2 390 Gene3D G3DSA:2.70.70.10 208 340 2.7E-92 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_1975 fcbce10f76f971a75e9e632a8bcc55f2 390 SUPERFAMILY SSF51261 88 335 3.14E-61 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_1975 fcbce10f76f971a75e9e632a8bcc55f2 390 Gene3D G3DSA:3.10.450.350 116 362 2.7E-92 T 13-10-2018 SJPD1_1975 fcbce10f76f971a75e9e632a8bcc55f2 390 Pfam PF01551 Peptidase family M23 237 333 1.1E-30 T 13-10-2018 IPR016047 Peptidase M23 SJPD1_0589 ea733e6fe52096eada852422e73e2fb0 369 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 210 355 5.9E-49 T 13-10-2018 IPR008136 CinA, C-terminal SJPD1_0589 ea733e6fe52096eada852422e73e2fb0 369 SUPERFAMILY SSF142433 202 357 7.98E-52 T 13-10-2018 IPR036653 CinA-like, C-terminal SJPD1_0589 ea733e6fe52096eada852422e73e2fb0 369 Pfam PF02464 Competence-damaged protein 207 356 4.7E-55 T 13-10-2018 IPR008136 CinA, C-terminal SJPD1_0589 ea733e6fe52096eada852422e73e2fb0 369 Gene3D G3DSA:3.90.950.20 194 360 5.7E-55 T 13-10-2018 IPR036653 CinA-like, C-terminal SJPD1_0164 11e9c633152364e5385a37cc349b700a 123 SUPERFAMILY SSF46785 3 119 4.12E-23 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily SJPD1_0164 11e9c633152364e5385a37cc349b700a 123 Gene3D G3DSA:1.10.10.10 1 81 3.0E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily SJPD1_0164 11e9c633152364e5385a37cc349b700a 123 Pfam PF01475 Ferric uptake regulator family 12 97 1.1E-15 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 SJPD1_1086 3ed44e66aace0b679bcdfc58a13a2c49 826 SUPERFAMILY SSF56059 22 455 1.77E-19 T 13-10-2018 SJPD1_1086 3ed44e66aace0b679bcdfc58a13a2c49 826 Pfam PF14403 Circularly permuted ATP-grasp type 2 80 454 2.5E-132 T 13-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 SJPD1_1086 3ed44e66aace0b679bcdfc58a13a2c49 826 Gene3D G3DSA:3.40.50.11290 218 313 3.3E-33 T 13-10-2018 SJPD1_1086 3ed44e66aace0b679bcdfc58a13a2c49 826 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 501 821 1.8E-44 T 13-10-2018 IPR007296 Domain of unknown function DUF403 SJPD1_2791 e11bdc4dd3bc4f697e80ab13ef9ad780 249 Gene3D G3DSA:1.20.1330.10 49 181 6.2E-19 T 13-10-2018 SJPD1_2791 e11bdc4dd3bc4f697e80ab13ef9ad780 249 Gene3D G3DSA:3.30.70.2120 182 229 6.2E-19 T 13-10-2018 SJPD1_2791 e11bdc4dd3bc4f697e80ab13ef9ad780 249 SUPERFAMILY SSF64518 17 240 1.31E-16 T 13-10-2018 SJPD1_2791 e11bdc4dd3bc4f697e80ab13ef9ad780 249 Pfam PF00669 Bacterial flagellin N-terminal helical region 19 145 1.0E-14 T 13-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 SJPD1_2638 deba397cb4020233511d129b013554eb 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 255 7.1E-15 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2638 deba397cb4020233511d129b013554eb 272 SUPERFAMILY SSF161098 72 257 2.09E-27 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2638 deba397cb4020233511d129b013554eb 272 Gene3D G3DSA:1.10.3720.10 67 261 5.0E-18 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1163 5ada07ffbdac8123254881e4626639df 267 Pfam PF01925 Sulfite exporter TauE/SafE 10 262 9.0E-50 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 SJPD1_1034 b987528828cf347b4fe4e6490d2afe40 653 Pfam PF00361 Proton-conducting membrane transporter 123 406 6.6E-53 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1034 b987528828cf347b4fe4e6490d2afe40 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 209 230 2.5E-6 T 13-10-2018 SJPD1_1034 b987528828cf347b4fe4e6490d2afe40 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 299 311 2.5E-6 T 13-10-2018 SJPD1_1034 b987528828cf347b4fe4e6490d2afe40 653 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 69 94 2.5E-6 T 13-10-2018 SJPD1_0928 ff5925bb7c69cf2e5096f98a9e180596 125 Pfam PF08905 Domain of unknown function (DUF1850) 20 105 7.3E-24 T 13-10-2018 IPR015001 Protein of unknown function DUF1850 SJPD1_0414 c745740c22738074c9822ac356e4611c 255 Gene3D G3DSA:3.40.1640.10 15 243 3.3E-85 T 13-10-2018 SJPD1_0414 c745740c22738074c9822ac356e4611c 255 Pfam PF07286 Protein of unknown function (DUF1445) 105 247 2.7E-64 T 13-10-2018 IPR009906 D-glutamate cyclase SJPD1_0414 c745740c22738074c9822ac356e4611c 255 PIRSF PIRSF029755 1 255 5.6E-101 T 13-10-2018 IPR016938 Uncharacterised protein family UPF0317 SJPD1_0414 c745740c22738074c9822ac356e4611c 255 Gene3D G3DSA:3.30.2040.10 115 227 3.3E-85 T 13-10-2018 SJPD1_0414 c745740c22738074c9822ac356e4611c 255 SUPERFAMILY SSF160920 1 248 4.58E-98 T 13-10-2018 IPR038021 Putative hydro-lyase SJPD1_0011 634a47ace2112962659f49b42bf0892e 299 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 281 1.5E-92 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 SJPD1_0011 634a47ace2112962659f49b42bf0892e 299 Pfam PF05681 Fumarate hydratase (Fumerase) 14 280 1.6E-74 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 SJPD1_1639 1589f607bff9445c6daecadb86444abf 401 Pfam PF01969 Protein of unknown function DUF111 4 385 2.6E-144 T 13-10-2018 IPR002822 Nickel insertion protein SJPD1_1639 1589f607bff9445c6daecadb86444abf 401 Hamap MF_01074 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel insertion protein [larC]. 1 397 39.583 T 13-10-2018 IPR002822 Nickel insertion protein SJPD1_1639 1589f607bff9445c6daecadb86444abf 401 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 3 385 4.6E-105 T 13-10-2018 IPR002822 Nickel insertion protein SJPD1_1639 1589f607bff9445c6daecadb86444abf 401 Gene3D G3DSA:3.30.70.1380 245 335 1.6E-13 T 13-10-2018 SJPD1_2869 7ebe2576fe1de56ddc27d8a6aecea28a 388 Pfam PF03916 Polysulphide reductase, NrfD 50 328 1.3E-21 T 13-10-2018 IPR005614 NrfD family SJPD1_2533 cca527a67003fc30b333a5cdd93f864e 405 Pfam PF03573 outer membrane porin, OprD family 58 296 1.1E-7 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 SJPD1_2533 cca527a67003fc30b333a5cdd93f864e 405 Gene3D G3DSA:2.40.160.10 33 405 2.6E-21 T 13-10-2018 IPR023614 Porin domain superfamily SJPD1_2533 cca527a67003fc30b333a5cdd93f864e 405 SUPERFAMILY SSF56935 35 405 5.13E-8 T 13-10-2018 SJPD1_2784 551ccf293a53cabc4ae69603a1e2f590 186 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 3 184 2.6E-56 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 SJPD1_2784 551ccf293a53cabc4ae69603a1e2f590 186 Hamap MF_00146 dCTP deaminase [dcd]. 1 184 29.167 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 SJPD1_2784 551ccf293a53cabc4ae69603a1e2f590 186 Gene3D G3DSA:2.70.40.10 1 156 1.1E-50 T 13-10-2018 IPR036157 dUTPase-like superfamily SJPD1_2784 551ccf293a53cabc4ae69603a1e2f590 186 SUPERFAMILY SSF51283 4 185 1.57E-51 T 13-10-2018 IPR036157 dUTPase-like superfamily SJPD1_2784 551ccf293a53cabc4ae69603a1e2f590 186 Pfam PF00692 dUTPase 78 180 1.7E-9 T 13-10-2018 IPR029054 dUTPase-like SJPD1_0656 aaf6f17ee4b49d0b1bee135c10c15647 141 Pfam PF03960 ArsC family 60 111 2.0E-6 T 13-10-2018 IPR006660 Arsenate reductase-like SJPD1_0656 aaf6f17ee4b49d0b1bee135c10c15647 141 SUPERFAMILY SSF52833 9 125 1.34E-26 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0656 aaf6f17ee4b49d0b1bee135c10c15647 141 Gene3D G3DSA:3.40.30.10 4 118 1.2E-16 T 13-10-2018 SJPD1_0465 d8315b2ef5574536af1e44f4988ea547 106 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 9 96 3.4E-22 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like SJPD1_0465 d8315b2ef5574536af1e44f4988ea547 106 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 18.308 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 SJPD1_1911 753fa921bb313f81473f34409e365580 213 Gene3D G3DSA:3.40.50.360 2 212 1.1E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1911 753fa921bb313f81473f34409e365580 213 SUPERFAMILY SSF52218 1 192 3.11E-47 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_1911 753fa921bb313f81473f34409e365580 213 Pfam PF03358 NADPH-dependent FMN reductase 1 159 1.1E-32 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 SJPD1_2800 4e81aa60544a5fb709dbc7dc1cee555a 210 Gene3D G3DSA:3.40.50.880 2 209 8.7E-76 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2800 4e81aa60544a5fb709dbc7dc1cee555a 210 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 4 204 34.403 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 SJPD1_2800 4e81aa60544a5fb709dbc7dc1cee555a 210 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 5 203 2.0E-72 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 SJPD1_2800 4e81aa60544a5fb709dbc7dc1cee555a 210 Pfam PF00117 Glutamine amidotransferase class-I 7 201 2.0E-21 T 13-10-2018 IPR017926 Glutamine amidotransferase SJPD1_2800 4e81aa60544a5fb709dbc7dc1cee555a 210 SUPERFAMILY SSF52317 5 203 2.45E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like SJPD1_2800 4e81aa60544a5fb709dbc7dc1cee555a 210 PIRSF PIRSF000495 3 207 1.1E-73 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 SJPD1_2276 db9d2cea230b9dfe0cd84ea50d7ea1f2 104 Gene3D G3DSA:3.90.226.10 1 103 6.4E-29 T 13-10-2018 SJPD1_2276 db9d2cea230b9dfe0cd84ea50d7ea1f2 104 SUPERFAMILY SSF52096 1 101 7.63E-22 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily SJPD1_1037 ce6ff196081bf2ea4ae14d105732ba32 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 69 94 4.5E-6 T 13-10-2018 SJPD1_1037 ce6ff196081bf2ea4ae14d105732ba32 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 224 245 4.5E-6 T 13-10-2018 SJPD1_1037 ce6ff196081bf2ea4ae14d105732ba32 494 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 318 330 4.5E-6 T 13-10-2018 SJPD1_1037 ce6ff196081bf2ea4ae14d105732ba32 494 Pfam PF00361 Proton-conducting membrane transporter 128 423 1.5E-52 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1531 8887cf04170877c97bd1a89f646e0777 302 Gene3D G3DSA:3.40.50.1980 13 302 1.0E-47 T 13-10-2018 SJPD1_1531 8887cf04170877c97bd1a89f646e0777 302 Pfam PF01497 Periplasmic binding protein 37 272 1.6E-22 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_1531 8887cf04170877c97bd1a89f646e0777 302 SUPERFAMILY SSF53807 22 299 5.89E-49 T 13-10-2018 SJPD1_1534 d0807673deb0ea5573a45426df216d84 215 SUPERFAMILY SSF53790 3 205 2.22E-37 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 SJPD1_1534 d0807673deb0ea5573a45426df216d84 215 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 6 204 2.2E-56 T 13-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 SJPD1_1534 d0807673deb0ea5573a45426df216d84 215 Gene3D G3DSA:3.40.1010.10 2 105 1.8E-18 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 SJPD1_1534 d0807673deb0ea5573a45426df216d84 215 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 186 3.2E-21 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 48 6.6E-10 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 PRINTS PR00045 Sigma-54 factor signature 377 395 2.0E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 PRINTS PR00045 Sigma-54 factor signature 305 317 2.0E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 PRINTS PR00045 Sigma-54 factor signature 321 332 2.0E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 PRINTS PR00045 Sigma-54 factor signature 137 154 2.0E-15 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 Pfam PF04552 Sigma-54, DNA binding domain 249 402 1.3E-45 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 Gene3D G3DSA:1.10.10.60 342 401 6.5E-16 T 13-10-2018 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 382 389 - T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 PIRSF PIRSF000774 1 69 8.8E-5 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 PIRSF PIRSF000774 52 404 7.0E-66 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 Pfam PF04963 Sigma-54 factor, core binding domain 67 241 1.6E-29 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 401 9.6E-92 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 SJPD1_1253 ffbca5ce63958191f03e2e7e5a289926 408 Gene3D G3DSA:1.10.10.1330 70 194 1.8E-20 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily SJPD1_0454 73197c1a0136555f3ce09fcccacc999f 187 SUPERFAMILY SSF46626 130 185 6.35E-7 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0454 73197c1a0136555f3ce09fcccacc999f 187 Gene3D G3DSA:1.10.760.10 129 185 2.4E-5 T 13-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 SJPD1_0286 e3e5d320e30d92252f1ad8887b98414c 456 SUPERFAMILY SSF51261 175 434 5.62E-50 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_0286 e3e5d320e30d92252f1ad8887b98414c 456 Pfam PF01551 Peptidase family M23 336 430 5.7E-24 T 13-10-2018 IPR016047 Peptidase M23 SJPD1_0286 e3e5d320e30d92252f1ad8887b98414c 456 Gene3D G3DSA:2.70.70.10 277 437 4.7E-33 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_2599 337f84f4425254c9213cbef61fc56bb3 304 Pfam PF03008 Archaea bacterial proteins of unknown function 146 235 1.6E-12 T 13-10-2018 IPR004256 Domain of unknown function DUF234, DEXX-box ATPase C-terminal SJPD1_0051 146f59ea76d4cc95dc85b529d4ce6a29 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 92 5.5E-26 T 13-10-2018 IPR007711 Toxin HigB-1 SJPD1_0051 146f59ea76d4cc95dc85b529d4ce6a29 92 Gene3D G3DSA:3.30.2310.20 1 92 2.8E-37 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily SJPD1_0051 146f59ea76d4cc95dc85b529d4ce6a29 92 SUPERFAMILY SSF143011 1 92 1.7E-15 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily SJPD1_2600 7205e9b51bcbaeb332d27a1a9f22fc03 324 Gene3D G3DSA:1.10.3210.10 145 322 7.1E-32 T 13-10-2018 SJPD1_2600 7205e9b51bcbaeb332d27a1a9f22fc03 324 SUPERFAMILY SSF109604 145 302 3.96E-23 T 13-10-2018 SJPD1_2600 7205e9b51bcbaeb332d27a1a9f22fc03 324 Pfam PF13328 HD domain 154 289 2.0E-9 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.4E-50 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.389 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 70 1.0E-12 T 13-10-2018 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 Pfam PF00453 Ribosomal protein L20 3 108 5.2E-46 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 Gene3D G3DSA:1.10.720.90 2 55 2.8E-21 T 13-10-2018 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 Gene3D G3DSA:1.10.1900.20 56 117 6.6E-31 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 SUPERFAMILY SSF74731 3 116 6.41E-47 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 4.8E-39 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 4.8E-39 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 4.8E-39 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0116 20eae11b1d1261489f7e137e250ab911 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_1441 f18fce4f700724cf437f5c7d20c4c2a7 219 Pfam PF08901 Protein of unknown function (DUF1847) 29 188 1.4E-63 T 13-10-2018 IPR014997 Protein of unknown function DUF1847 SJPD1_1955 f0fd683b37ca856e4f25f20bab6e9be5 331 SUPERFAMILY SSF55909 2 324 2.5E-105 T 13-10-2018 SJPD1_1955 f0fd683b37ca856e4f25f20bab6e9be5 331 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 4 323 3.3E-101 T 13-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 SJPD1_1955 f0fd683b37ca856e4f25f20bab6e9be5 331 Gene3D G3DSA:3.75.10.10 1 326 3.1E-108 T 13-10-2018 SJPD1_2500 966106eab4b66d486cb3470e3ed87e0f 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 7.4E-193 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 SJPD1_2500 966106eab4b66d486cb3470e3ed87e0f 433 PIRSF PIRSF004539 1 433 4.5E-181 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 SJPD1_2500 966106eab4b66d486cb3470e3ed87e0f 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 2.5E-150 T 13-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 SJPD1_0815 549374fb98edff7a5bf31808c86a7dd7 162 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 24 147 1.3E-10 T 13-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 SJPD1_0815 549374fb98edff7a5bf31808c86a7dd7 162 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 18 147 4.4E-6 T 13-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related SJPD1_0185 b4f8d6566cf9a0459bf69a8191be7b51 472 Gene3D G3DSA:3.40.309.10 248 440 7.7E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 SJPD1_0185 b4f8d6566cf9a0459bf69a8191be7b51 472 SUPERFAMILY SSF53720 3 471 1.96E-137 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 SJPD1_0185 b4f8d6566cf9a0459bf69a8191be7b51 472 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 13-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 SJPD1_0185 b4f8d6566cf9a0459bf69a8191be7b51 472 Pfam PF00171 Aldehyde dehydrogenase family 19 470 2.2E-148 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 SJPD1_0185 b4f8d6566cf9a0459bf69a8191be7b51 472 Gene3D G3DSA:3.40.605.10 9 468 7.7E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 SJPD1_1416 0d94ef9e26d08f14af87bf8b42b0630c 166 Gene3D G3DSA:3.40.630.30 1 166 1.6E-36 T 13-10-2018 SJPD1_1416 0d94ef9e26d08f14af87bf8b42b0630c 166 Pfam PF13420 Acetyltransferase (GNAT) domain 5 151 5.7E-18 T 13-10-2018 SJPD1_1416 0d94ef9e26d08f14af87bf8b42b0630c 166 SUPERFAMILY SSF55729 5 161 3.01E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_1597 6df1bdd2853c6cc33a7da90fadef37f2 126 Pfam PF03692 Putative zinc- or iron-chelating domain 18 120 2.7E-13 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein SJPD1_2202 a578abc82fa9ab000b9674822843259a 497 Pfam PF05170 AsmA family 211 337 1.2E-7 T 13-10-2018 IPR007844 AsmA SJPD1_2202 a578abc82fa9ab000b9674822843259a 497 Pfam PF05170 AsmA family 5 189 1.2E-23 T 13-10-2018 IPR007844 AsmA SJPD1_1751 a7cfc140c790d8ddfb1633dfa823b1be 171 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 20 102 1.2E-8 T 13-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like SJPD1_1751 a7cfc140c790d8ddfb1633dfa823b1be 171 SUPERFAMILY SSF89392 14 170 3.57E-24 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX SJPD1_1751 a7cfc140c790d8ddfb1633dfa823b1be 171 Gene3D G3DSA:2.50.20.10 11 171 6.1E-19 T 13-10-2018 SJPD1_2571 a0020286b7ae0715a135dfc31ad91b29 189 ProSitePatterns PS01213 Protozoan/cyanobacterial globins signature. 96 120 - T 13-10-2018 IPR019795 Globin, bacterial-like, conserved site GO:0015671|GO:0019825 SJPD1_2571 a0020286b7ae0715a135dfc31ad91b29 189 Gene3D G3DSA:1.10.490.10 44 189 1.4E-43 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 SJPD1_2571 a0020286b7ae0715a135dfc31ad91b29 189 Pfam PF01152 Bacterial-like globin 53 165 1.6E-20 T 13-10-2018 IPR001486 Truncated hemoglobin GO:0019825 SJPD1_2571 a0020286b7ae0715a135dfc31ad91b29 189 SUPERFAMILY SSF46458 53 167 1.61E-19 T 13-10-2018 IPR009050 Globin-like superfamily SJPD1_2843 7d1a88ab66f88e9c898fee8b82afd26e 85 SUPERFAMILY SSF117991 3 85 3.01E-22 T 13-10-2018 IPR027471 YbeD-like domain superfamily SJPD1_2843 7d1a88ab66f88e9c898fee8b82afd26e 85 Gene3D G3DSA:3.30.70.260 2 85 1.9E-13 T 13-10-2018 SJPD1_2843 7d1a88ab66f88e9c898fee8b82afd26e 85 ProDom PD061650 JHP0447 HP0495 CJ0253 10 85 5.0E-15 T 13-10-2018 SJPD1_2843 7d1a88ab66f88e9c898fee8b82afd26e 85 Pfam PF04359 Protein of unknown function (DUF493) 8 85 1.8E-16 T 13-10-2018 IPR007454 Uncharacterised protein family UPF0250 SJPD1_2047 c4d2fc77809a9613a1985425b0636491 242 SUPERFAMILY SSF75708 49 240 7.06E-29 T 13-10-2018 SJPD1_0830 ad434a84ac5ca3df5e0d79b785ec91e0 547 SUPERFAMILY SSF53955 388 530 8.63E-29 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily SJPD1_0830 ad434a84ac5ca3df5e0d79b785ec91e0 547 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 394 422 - T 13-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 SJPD1_0830 ad434a84ac5ca3df5e0d79b785ec91e0 547 Pfam PF01464 Transglycosylase SLT domain 387 481 1.3E-17 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 SJPD1_0830 ad434a84ac5ca3df5e0d79b785ec91e0 547 Gene3D G3DSA:1.10.530.10 345 533 2.5E-26 T 13-10-2018 SJPD1_0777 06f1fbf6ed23d1e6e61c021f8d3fe9d9 131 Pfam PF08447 PAS fold 26 103 8.5E-17 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 SJPD1_0777 06f1fbf6ed23d1e6e61c021f8d3fe9d9 131 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 16 98 7.5E-12 T 13-10-2018 IPR000014 PAS domain SJPD1_0777 06f1fbf6ed23d1e6e61c021f8d3fe9d9 131 SUPERFAMILY SSF55785 14 98 2.65E-25 T 13-10-2018 IPR035965 PAS domain superfamily SJPD1_0777 06f1fbf6ed23d1e6e61c021f8d3fe9d9 131 Gene3D G3DSA:3.30.450.20 6 108 9.7E-22 T 13-10-2018 SJPD1_0671 50b2eff94a4be094722a4488759250e4 249 Pfam PF01925 Sulfite exporter TauE/SafE 5 236 6.9E-42 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 SJPD1_1235 157c04335de50ee5bbd6fbe2c52eb173 125 SUPERFAMILY SSF54862 1 84 1.32E-13 T 13-10-2018 SJPD1_1235 157c04335de50ee5bbd6fbe2c52eb173 125 Gene3D G3DSA:3.30.70.20 2 87 1.2E-19 T 13-10-2018 SJPD1_1235 157c04335de50ee5bbd6fbe2c52eb173 125 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 13-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site SJPD1_1235 157c04335de50ee5bbd6fbe2c52eb173 125 Pfam PF12838 4Fe-4S dicluster domain 9 62 1.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain SJPD1_0913 58ff55ba1803b847b0567a42a04f8e54 190 Pfam PF01738 Dienelactone hydrolase family 2 176 1.8E-6 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 SJPD1_0913 58ff55ba1803b847b0567a42a04f8e54 190 Gene3D G3DSA:3.40.50.1820 1 186 2.6E-8 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0913 58ff55ba1803b847b0567a42a04f8e54 190 SUPERFAMILY SSF53474 59 187 3.51E-6 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0985 8b4fdcc91ca857527da5bde99cf4ada1 156 Pfam PF05573 NosL 19 146 7.2E-19 T 13-10-2018 IPR008719 Nitrous oxide reductase accessory protein NosL SJPD1_0985 8b4fdcc91ca857527da5bde99cf4ada1 156 SUPERFAMILY SSF160387 41 152 2.88E-25 T 13-10-2018 SJPD1_2225 2e17c285e295debc2ae7499685331937 334 Pfam PF00953 Glycosyl transferase family 4 74 225 1.4E-34 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 SJPD1_2225 2e17c285e295debc2ae7499685331937 334 ProSitePatterns PS01348 MraY family signature 2. 146 157 - T 13-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_1254 ba576f7c21fe4f791935ed0364a02277 120 Pfam PF04891 NifQ 24 115 1.5E-14 T 13-10-2018 IPR006975 NifQ GO:0009399|GO:0030151 SJPD1_0272 cfd88055f75283666da842b237cf0f4f 473 Pfam PF13584 Oxygen tolerance 27 424 1.3E-42 T 13-10-2018 IPR025738 Aerotolerance-related protein BatD SJPD1_1487 cc41a91a12d628913c196ea278413a9f 197 SUPERFAMILY SSF56349 15 191 1.12E-31 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 SJPD1_1487 cc41a91a12d628913c196ea278413a9f 197 Pfam PF00589 Phage integrase family 28 185 5.5E-15 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 SJPD1_1487 cc41a91a12d628913c196ea278413a9f 197 Gene3D G3DSA:1.10.443.10 8 197 1.9E-28 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 SJPD1_2178 98befae35ade4170cb057cb9db205040 406 Pfam PF02687 FtsX-like permease family 312 399 1.6E-13 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 SJPD1_2178 98befae35ade4170cb057cb9db205040 406 Pfam PF12704 MacB-like periplasmic core domain 20 245 1.1E-40 T 13-10-2018 IPR025857 MacB-like periplasmic core domain SJPD1_0851 aea31525dce0e4e037718a462eb0d987 188 SUPERFAMILY SSF53474 2 181 4.14E-34 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0851 aea31525dce0e4e037718a462eb0d987 188 Pfam PF06821 Serine hydrolase 4 182 5.2E-29 T 13-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 SJPD1_0851 aea31525dce0e4e037718a462eb0d987 188 Gene3D G3DSA:3.40.50.1820 1 188 2.2E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2173 d4d401f7d131896a1fb5982c401a5aa2 133 Pfam PF03459 TOBE domain 68 125 4.6E-6 T 13-10-2018 IPR005116 Transport-associated OB, type 1 SJPD1_2173 d4d401f7d131896a1fb5982c401a5aa2 133 SUPERFAMILY SSF50331 1 128 1.47E-16 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal SJPD1_2173 d4d401f7d131896a1fb5982c401a5aa2 133 Gene3D G3DSA:2.40.50.100 64 128 9.9E-13 T 13-10-2018 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 Gene3D G3DSA:3.30.465.10 113 240 1.0E-55 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 Pfam PF01565 FAD binding domain 56 195 1.2E-25 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 Gene3D G3DSA:3.40.462.10 241 470 1.3E-79 T 13-10-2018 IPR016170 Cytokinin dehydrogenase, C-terminal domain superfamily KEGG: 00908+1.5.99.12 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 Pfam PF02913 FAD linked oxidases, C-terminal domain 320 509 8.6E-13 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 SUPERFAMILY SSF55103 242 512 1.0E-48 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 SUPERFAMILY SSF56176 8 240 1.87E-52 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 Gene3D G3DSA:1.10.45.10 471 513 3.7E-13 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 SJPD1_1025 bf0960442627cd6a149cad5c3bb17111 513 Gene3D G3DSA:3.30.43.10 2 112 9.2E-33 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 SJPD1_0795 9c2dca97a6c02f75c222fce25838671b 119 Gene3D G3DSA:2.70.70.10 1 118 3.1E-18 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_0795 9c2dca97a6c02f75c222fce25838671b 119 SUPERFAMILY SSF51261 4 116 1.28E-19 T 13-10-2018 IPR011055 Duplicated hybrid motif SJPD1_0795 9c2dca97a6c02f75c222fce25838671b 119 Pfam PF01551 Peptidase family M23 31 104 3.2E-16 T 13-10-2018 IPR016047 Peptidase M23 SJPD1_0521 fe6df8278406477da0949eeda2a65673 257 Pfam PF01311 Bacterial export proteins, family 1 14 245 3.7E-55 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 SJPD1_0521 fe6df8278406477da0949eeda2a65673 257 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 252 4.5E-63 T 13-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 SJPD1_0521 fe6df8278406477da0949eeda2a65673 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 6.0E-21 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 SJPD1_0521 fe6df8278406477da0949eeda2a65673 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 6.0E-21 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 SJPD1_0521 fe6df8278406477da0949eeda2a65673 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 6.0E-21 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 SJPD1_0521 fe6df8278406477da0949eeda2a65673 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 6.0E-21 T 13-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 SJPD1_1604 624e103823900fba43379ad411f6c4c0 93 ProDom PD074023 BIOSYNTHESIS COBALAMIN CBIM COBALT PRECURSOR SIGNAL NICKEL MEMBRANE ABC PROTEIN 21 89 1.0E-8 T 13-10-2018 IPR020486 Probable fused nickel transport protein LarMN-like SJPD1_1676 bad8dc8a96ef529dce55269d69b1ca2b 160 SUPERFAMILY SSF56925 27 160 6.28E-10 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel SJPD1_1676 bad8dc8a96ef529dce55269d69b1ca2b 160 Gene3D G3DSA:2.40.160.20 12 160 9.5E-8 T 13-10-2018 SJPD1_2302 09c33d1a2aa290be50808f3e9a2eb186 226 Pfam PF09335 SNARE associated Golgi protein 72 189 5.7E-27 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_2596 d220c472d47bff7feb6379bb5d679944 188 SUPERFAMILY SSF101874 20 185 5.89E-50 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily SJPD1_2596 d220c472d47bff7feb6379bb5d679944 188 SMART SM00867 21 185 1.8E-63 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like SJPD1_2596 d220c472d47bff7feb6379bb5d679944 188 Gene3D G3DSA:2.40.128.110 21 186 1.1E-46 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily SJPD1_2596 d220c472d47bff7feb6379bb5d679944 188 Pfam PF04264 YceI-like domain 22 183 1.4E-40 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like SJPD1_1322 c2b6fb87a5b62ca59c1604824cfeff09 225 Gene3D G3DSA:1.10.1060.20 98 209 9.6E-11 T 13-10-2018 SJPD1_1322 c2b6fb87a5b62ca59c1604824cfeff09 225 Gene3D G3DSA:3.10.20.30 1 97 4.0E-25 T 13-10-2018 IPR012675 Beta-grasp domain superfamily SJPD1_2397 a4d2ada04e95c6c4fe9c8f7f177551ab 175 SUPERFAMILY SSF158791 70 161 2.09E-6 T 13-10-2018 SJPD1_0025 b9002c7428cb90f89c6ae0fbd0bddd54 144 SUPERFAMILY SSF55729 1 136 3.04E-23 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_0025 b9002c7428cb90f89c6ae0fbd0bddd54 144 Gene3D G3DSA:3.40.630.30 1 137 5.9E-25 T 13-10-2018 SJPD1_0025 b9002c7428cb90f89c6ae0fbd0bddd54 144 Pfam PF00583 Acetyltransferase (GNAT) family 40 131 1.4E-14 T 13-10-2018 IPR000182 GNAT domain SJPD1_0144 513c500130f293192f587c54ea06f261 529 Gene3D G3DSA:1.10.3210.10 329 529 3.1E-69 T 13-10-2018 SJPD1_0144 513c500130f293192f587c54ea06f261 529 Pfam PF01966 HD domain 355 477 9.0E-19 T 13-10-2018 IPR006674 HD domain SJPD1_0144 513c500130f293192f587c54ea06f261 529 SUPERFAMILY SSF109604 338 517 4.4E-39 T 13-10-2018 SJPD1_0144 513c500130f293192f587c54ea06f261 529 SMART SM00471 350 487 2.9E-7 T 13-10-2018 IPR003607 HD/PDEase domain SJPD1_1651 27e28a5783e064cbbe41c2a8f0c637de 166 PIRSF PIRSF000709 1 94 1.9E-4 T 13-10-2018 SJPD1_1651 27e28a5783e064cbbe41c2a8f0c637de 166 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 108 9.4E-13 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 SJPD1_1651 27e28a5783e064cbbe41c2a8f0c637de 166 SUPERFAMILY SSF53254 1 161 1.61E-27 T 13-10-2018 IPR029033 Histidine phosphatase superfamily SJPD1_1651 27e28a5783e064cbbe41c2a8f0c637de 166 SMART SM00855 3 117 3.7E-7 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 SJPD1_1651 27e28a5783e064cbbe41c2a8f0c637de 166 Gene3D G3DSA:3.40.50.1240 1 163 1.9E-36 T 13-10-2018 IPR029033 Histidine phosphatase superfamily SJPD1_0911 432104b34e4868a7fe79650c2869e7f9 296 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 44 271 6.5E-68 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 SJPD1_0911 432104b34e4868a7fe79650c2869e7f9 296 Pfam PF02666 Phosphatidylserine decarboxylase 56 272 4.6E-56 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 SJPD1_1801 aa3f09f0d70ab9a3c46d74bcc8996445 153 Pfam PF16491 CAAX prenyl protease N-terminal, five membrane helices 38 149 1.9E-21 T 13-10-2018 IPR032456 CAAX prenyl protease 1, N-terminal KEGG: 00900+3.4.24.84 SJPD1_0136 f944f88dc7cea5e707f0fc7144250775 317 Pfam PF02470 MlaD protein 46 115 5.3E-15 T 13-10-2018 IPR003399 Mce/MlaD SJPD1_0983 47ccf8a41378d0d8df43b41f508eb41b 186 Gene3D G3DSA:3.40.50.300 1 181 1.2E-13 T 13-10-2018 SJPD1_0983 47ccf8a41378d0d8df43b41f508eb41b 186 SUPERFAMILY SSF52540 1 167 2.31E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0806 6f2b14b5462ed8815925287a51f3df1f 188 Pfam PF03923 Uncharacterized lipoprotein 48 182 9.1E-11 T 13-10-2018 IPR005619 Uncharacterised protein family, YajG SJPD1_2587 7a5978d30330d53d1846d73e8bef8926 237 Pfam PF02613 Nitrate reductase delta subunit 68 168 1.5E-8 T 13-10-2018 IPR020945 DMSO/Nitrate reductase chaperone SJPD1_2587 7a5978d30330d53d1846d73e8bef8926 237 SUPERFAMILY SSF89155 6 202 3.4E-28 T 13-10-2018 IPR036411 TorD-like superfamily SJPD1_2587 7a5978d30330d53d1846d73e8bef8926 237 Gene3D G3DSA:1.10.3480.10 3 204 6.7E-21 T 13-10-2018 SJPD1_1035 7533922ee6172b7ea7de179bd9c7f94b 307 Pfam PF00146 NADH dehydrogenase 8 303 5.6E-48 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1437 59af4ac84019b9c5731b32ee84b998c8 372 Pfam PF12698 ABC-2 family transporter protein 23 361 1.2E-31 T 13-10-2018 SJPD1_2437 daa86e4e7f52a8819278d7fd58d39380 204 Gene3D G3DSA:3.40.1370.10 3 204 3.3E-58 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2437 daa86e4e7f52a8819278d7fd58d39380 204 SUPERFAMILY SSF52166 2 201 1.09E-57 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 SJPD1_2437 daa86e4e7f52a8819278d7fd58d39380 204 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 24 201 2.8E-61 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_2437 daa86e4e7f52a8819278d7fd58d39380 204 Pfam PF00573 Ribosomal protein L4/L1 family 23 202 2.6E-53 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 SJPD1_2437 daa86e4e7f52a8819278d7fd58d39380 204 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 204 26.517 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 SUPERFAMILY SSF118215 20 414 7.45E-93 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 Gene3D G3DSA:1.10.3860.10 7 431 3.1E-100 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 Pfam PF00375 Sodium:dicarboxylate symporter family 20 413 1.2E-84 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 PRINTS PR00173 Glutamate-aspartate symporter signature 339 358 4.0E-24 T 13-10-2018 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 PRINTS PR00173 Glutamate-aspartate symporter signature 304 330 4.0E-24 T 13-10-2018 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 PRINTS PR00173 Glutamate-aspartate symporter signature 14 34 4.0E-24 T 13-10-2018 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 PRINTS PR00173 Glutamate-aspartate symporter signature 85 110 4.0E-24 T 13-10-2018 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 PRINTS PR00173 Glutamate-aspartate symporter signature 55 75 4.0E-24 T 13-10-2018 SJPD1_0673 835eac0b840a981b605cd9be7e6195a6 439 PRINTS PR00173 Glutamate-aspartate symporter signature 204 223 4.0E-24 T 13-10-2018 SJPD1_2228 4a84f053849c18709714bfaa0b0d0c67 286 Pfam PF00535 Glycosyl transferase family 2 5 106 2.0E-12 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2228 4a84f053849c18709714bfaa0b0d0c67 286 SUPERFAMILY SSF53448 2 257 2.25E-26 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2228 4a84f053849c18709714bfaa0b0d0c67 286 Gene3D G3DSA:3.90.550.10 1 197 1.6E-18 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_1657 3b94de0b9687d4472b40f52ee827dc9e 536 SUPERFAMILY SSF50182 315 395 1.96E-6 T 13-10-2018 IPR010920 LSM domain superfamily SJPD1_1657 3b94de0b9687d4472b40f52ee827dc9e 536 Pfam PF00924 Mechanosensitive ion channel 271 463 6.7E-37 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 SJPD1_1157 00e4649b40ed5fac8f5fece8d0ef1a9b 270 Gene3D G3DSA:1.10.3210.10 1 254 1.7E-58 T 13-10-2018 SJPD1_1157 00e4649b40ed5fac8f5fece8d0ef1a9b 270 Pfam PF08668 HDOD domain 12 212 1.2E-32 T 13-10-2018 IPR013976 Metal-dependent hydrolase HDOD SJPD1_1157 00e4649b40ed5fac8f5fece8d0ef1a9b 270 SUPERFAMILY SSF109604 3 268 6.28E-46 T 13-10-2018 SJPD1_0653 4360e6ed285ecb01c0ef92264ad78f4a 402 SUPERFAMILY SSF53300 252 370 3.15E-7 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_0653 4360e6ed285ecb01c0ef92264ad78f4a 402 Pfam PF13203 Putative metallopeptidase domain 27 259 1.5E-26 T 13-10-2018 IPR025154 Putative metallopeptidase domain SJPD1_0653 4360e6ed285ecb01c0ef92264ad78f4a 402 Gene3D G3DSA:3.40.50.410 255 387 1.7E-7 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily SJPD1_2730 dd8237221063d1eca316d04380470e56 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 9 76 3.4E-13 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain SJPD1_2730 dd8237221063d1eca316d04380470e56 96 SUPERFAMILY SSF54909 3 89 5.37E-21 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel SJPD1_2730 dd8237221063d1eca316d04380470e56 96 Gene3D G3DSA:3.30.70.100 3 96 2.6E-21 T 13-10-2018 SJPD1_1885 0a19b87e511d0080c4e0e964dab04114 232 Pfam PF04402 Protein of unknown function (DUF541) 23 210 1.0E-10 T 13-10-2018 IPR007497 Protein of unknown function DUF541 SJPD1_1885 0a19b87e511d0080c4e0e964dab04114 232 Gene3D G3DSA:3.30.110.170 32 210 6.9E-9 T 13-10-2018 SJPD1_1885 0a19b87e511d0080c4e0e964dab04114 232 Gene3D G3DSA:3.30.70.2970 34 142 6.9E-9 T 13-10-2018 SJPD1_2331 75f26cdc55003d6c5cc2edb620679b82 449 Pfam PF09925 Predicted membrane protein (DUF2157) 15 155 3.6E-31 T 13-10-2018 IPR018677 Domain of unknown function DUF2157 SJPD1_0170 ba5e959a01711f9f31704fa36e58fbfc 132 Gene3D G3DSA:1.20.58.1610 6 129 2.2E-34 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0170 ba5e959a01711f9f31704fa36e58fbfc 132 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 39 128 1.0E-30 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0043 55305657d03fd19867e774a74286264e 437 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1 82 7.0E-11 T 13-10-2018 SJPD1_0183 79d7cd37d87769abf8aad1c83b2fdb8b 497 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 16 479 2.1E-117 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 SJPD1_0183 79d7cd37d87769abf8aad1c83b2fdb8b 497 Pfam PF00361 Proton-conducting membrane transporter 129 428 9.7E-59 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0183 79d7cd37d87769abf8aad1c83b2fdb8b 497 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 12 485 15.527 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 SJPD1_0100 9b93e602bf631da0763d76b742544ad3 627 Pfam PF02120 Flagellar hook-length control protein FliK 527 599 4.9E-8 T 13-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal SJPD1_1786 b1ccb5363a0bb567b50e7eaffe131e97 186 SUPERFAMILY SSF52833 13 169 4.03E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_1786 b1ccb5363a0bb567b50e7eaffe131e97 186 Pfam PF08534 Redoxin 26 168 2.2E-19 T 13-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 SJPD1_1786 b1ccb5363a0bb567b50e7eaffe131e97 186 Gene3D G3DSA:3.40.30.10 6 174 6.1E-40 T 13-10-2018 SJPD1_1786 b1ccb5363a0bb567b50e7eaffe131e97 186 ProSitePatterns PS01265 Tpx family signature. 89 100 - T 13-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 SJPD1_1664 419fc641b7e687941d29f99280303af4 193 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 15 181 3.2E-39 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 SJPD1_1664 419fc641b7e687941d29f99280303af4 193 Gene3D G3DSA:3.30.70.580 12 183 9.5E-40 T 13-10-2018 SJPD1_1664 419fc641b7e687941d29f99280303af4 193 Gene3D G3DSA:3.30.70.1560 78 168 9.5E-40 T 13-10-2018 SJPD1_1664 419fc641b7e687941d29f99280303af4 193 SUPERFAMILY SSF55120 7 189 1.6E-31 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_1664 419fc641b7e687941d29f99280303af4 193 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 50 64 - T 13-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 SJPD1_1664 419fc641b7e687941d29f99280303af4 193 Pfam PF00849 RNA pseudouridylate synthase 11 142 8.9E-11 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 SJPD1_0069 64622d866f925ccb84c6ab2fa5af3a15 91 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 3 90 3.9E-28 T 13-10-2018 IPR014057 Uncharacterized protein HI1420 SJPD1_0987 4bd50cb251944beadca958f4e73d4999 169 SUPERFAMILY SSF160387 66 132 1.12E-10 T 13-10-2018 SJPD1_2862 8f11def6b8ea67e225eebe43aca141a5 421 Pfam PF03916 Polysulphide reductase, NrfD 82 357 1.2E-11 T 13-10-2018 IPR005614 NrfD family SJPD1_1438 76ef2b407f3989df2929eb0990726df2 359 Pfam PF12698 ABC-2 family transporter protein 19 350 1.5E-30 T 13-10-2018 SJPD1_0927 8b4c4a5d7efaef65c59f5330ae4d9a68 688 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 399 610 4.8E-29 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit SJPD1_0927 8b4c4a5d7efaef65c59f5330ae4d9a68 688 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 128 397 1.5E-60 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit SJPD1_0927 8b4c4a5d7efaef65c59f5330ae4d9a68 688 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 31 687 2.7E-216 T 13-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ SJPD1_1176 5616e77e348e17f6326c851c9ff4dffc 182 Gene3D G3DSA:3.40.30.10 14 182 2.5E-33 T 13-10-2018 SJPD1_1176 5616e77e348e17f6326c851c9ff4dffc 182 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 13-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 SJPD1_1176 5616e77e348e17f6326c851c9ff4dffc 182 Pfam PF13905 Thioredoxin-like 68 160 8.9E-14 T 13-10-2018 IPR012336 Thioredoxin-like fold SJPD1_1176 5616e77e348e17f6326c851c9ff4dffc 182 SUPERFAMILY SSF52833 3 182 1.11E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_2074 273f969d7abe7ae27a3398a3a184d1d9 130 SUPERFAMILY SSF52833 23 126 9.94E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_2074 273f969d7abe7ae27a3398a3a184d1d9 130 Gene3D G3DSA:3.40.30.10 19 130 2.5E-17 T 13-10-2018 SJPD1_2074 273f969d7abe7ae27a3398a3a184d1d9 130 Pfam PF13098 Thioredoxin-like domain 32 121 2.3E-8 T 13-10-2018 IPR012336 Thioredoxin-like fold SJPD1_2106 2c3f77ee878bdba16006a47b10f3a879 327 Pfam PF00248 Aldo/keto reductase family 16 306 3.9E-73 T 13-10-2018 IPR023210 NADP-dependent oxidoreductase domain SJPD1_2106 2c3f77ee878bdba16006a47b10f3a879 327 SUPERFAMILY SSF51430 1 312 5.5E-99 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2106 2c3f77ee878bdba16006a47b10f3a879 327 Gene3D G3DSA:3.20.20.100 1 326 2.8E-110 T 13-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily SJPD1_2317 bcf0efe8492b4e6e5c95ae7e6b5f8d63 224 Pfam PF03692 Putative zinc- or iron-chelating domain 37 128 5.0E-7 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein SJPD1_2317 bcf0efe8492b4e6e5c95ae7e6b5f8d63 224 Pfam PF07277 SapC 46 178 3.1E-7 T 13-10-2018 IPR010836 SapC SJPD1_0307 e45891a353f9a1b9f2b79f6daa2359a7 317 Gene3D G3DSA:1.20.1630.10 7 264 4.0E-16 T 13-10-2018 SJPD1_0307 e45891a353f9a1b9f2b79f6daa2359a7 317 Pfam PF03916 Polysulphide reductase, NrfD 7 316 3.8E-93 T 13-10-2018 IPR005614 NrfD family SJPD1_0680 600b45a06bef9edf8791571b8d0fbe23 164 Gene3D G3DSA:1.20.120.1490 50 155 2.3E-17 T 13-10-2018 SJPD1_0680 600b45a06bef9edf8791571b8d0fbe23 164 Pfam PF07813 LTXXQ motif family protein 53 147 3.5E-9 T 13-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 SJPD1_2337 b551049b384ab5ce1718699dac3f6133 187 SUPERFAMILY SSF52218 1 172 1.6E-44 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2337 b551049b384ab5ce1718699dac3f6133 187 Gene3D G3DSA:3.40.50.360 2 179 1.6E-54 T 13-10-2018 IPR029039 Flavoprotein-like superfamily SJPD1_2337 b551049b384ab5ce1718699dac3f6133 187 Pfam PF02525 Flavodoxin-like fold 2 170 1.5E-43 T 13-10-2018 IPR003680 Flavodoxin-like fold SJPD1_1432 10103fa07395bb7b0dfdabb4e87a855c 165 Gene3D G3DSA:3.40.30.10 3 151 1.0E-7 T 13-10-2018 SJPD1_1432 10103fa07395bb7b0dfdabb4e87a855c 165 SUPERFAMILY SSF52833 19 154 9.86E-6 T 13-10-2018 IPR036249 Thioredoxin-like superfamily SJPD1_0573 5cb4737cfdb6aa8e103dab24d257336e 329 Gene3D G3DSA:3.40.190.170 21 329 4.3E-111 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily SJPD1_0573 5cb4737cfdb6aa8e103dab24d257336e 329 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 28 314 7.2E-90 T 13-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 SJPD1_0573 5cb4737cfdb6aa8e103dab24d257336e 329 PIRSF PIRSF006470 1 329 1.4E-111 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 SJPD1_0573 5cb4737cfdb6aa8e103dab24d257336e 329 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 28 281 2.1E-91 T 13-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 SJPD1_0210 55ff8fa083f8c02c3e8e860738a22b7c 178 Pfam PF09624 Protein of unknown function (DUF2393) 34 178 3.6E-27 T 13-10-2018 IPR013417 Conserved hypothetical protein CHP02588 SJPD1_2452 7adacfd83cfbbd56c003a58d1856bc70 201 SUPERFAMILY SSF103039 6 196 3.92E-28 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_2452 7adacfd83cfbbd56c003a58d1856bc70 201 Gene3D G3DSA:3.40.1550.10 5 197 4.0E-34 T 13-10-2018 IPR028976 CheC-like superfamily SJPD1_0467 b70b26a137984350fc7d6c471981762c 256 Pfam PF00361 Proton-conducting membrane transporter 4 57 6.7E-10 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0209 5aee99d177f5ddd39db6a4ede289e5f8 179 Pfam PF09624 Protein of unknown function (DUF2393) 21 179 1.8E-33 T 13-10-2018 IPR013417 Conserved hypothetical protein CHP02588 SJPD1_1439 ca01595c1641e510c75ac75a2eeca8b4 201 Pfam PF01914 MarC family integral membrane protein 5 199 7.3E-37 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 SJPD1_1439 ca01595c1641e510c75ac75a2eeca8b4 201 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 3 196 8.9E-34 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 SJPD1_1521 0bea5cb48aebfc7c1f17b2bd82f1aa10 388 Gene3D G3DSA:3.40.640.10 70 284 2.2E-68 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 SJPD1_1521 0bea5cb48aebfc7c1f17b2bd82f1aa10 388 Gene3D G3DSA:3.90.1150.10 285 380 2.2E-68 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 SJPD1_1521 0bea5cb48aebfc7c1f17b2bd82f1aa10 388 Pfam PF00155 Aminotransferase class I and II 75 373 4.0E-35 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 SJPD1_1521 0bea5cb48aebfc7c1f17b2bd82f1aa10 388 SUPERFAMILY SSF53383 67 383 1.07E-51 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase SJPD1_2375 2e2e1f17061dfcfeda0cefeec00c6615 155 Pfam PF04463 Protein of unknown function (DUF523) 5 143 8.3E-42 T 13-10-2018 IPR007553 Domain of unknown function DUF523 SJPD1_2827 a91799e2dde1870bd8dcd3085953e8b6 444 Gene3D G3DSA:2.30.310.10 7 156 1.8E-14 T 13-10-2018 SJPD1_2827 a91799e2dde1870bd8dcd3085953e8b6 444 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 17 174 2.8E-11 T 13-10-2018 SJPD1_2827 a91799e2dde1870bd8dcd3085953e8b6 444 Pfam PF05670 Domain of unknown function (DUF814) 344 424 5.3E-19 T 13-10-2018 IPR008532 Domain of unknown function DUF814 SJPD1_0660 c099a2f8405921fe5ae332dbe9d93d0b 160 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 1 79 2.9E-14 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 SJPD1_0660 c099a2f8405921fe5ae332dbe9d93d0b 160 Gene3D G3DSA:2.30.110.10 1 160 7.4E-47 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_0660 c099a2f8405921fe5ae332dbe9d93d0b 160 PIRSF PIRSF004633 1 160 7.7E-47 T 13-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain SJPD1_0660 c099a2f8405921fe5ae332dbe9d93d0b 160 SUPERFAMILY SSF50475 2 143 9.73E-28 T 13-10-2018 SJPD1_1586 69d8896ad4ad0530ce5f8c2586f089f4 361 Gene3D G3DSA:1.10.3720.10 144 359 2.7E-44 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1586 69d8896ad4ad0530ce5f8c2586f089f4 361 SUPERFAMILY SSF161098 152 342 5.1E-38 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_1586 69d8896ad4ad0530ce5f8c2586f089f4 361 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 170 356 3.3E-23 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_1586 69d8896ad4ad0530ce5f8c2586f089f4 361 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 152 248 9.3E-22 T 13-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 SJPD1_1019 ea7b15d86204ac6ce9bca3fd278b8442 111 SUPERFAMILY SSF47413 9 67 3.15E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 SJPD1_1019 ea7b15d86204ac6ce9bca3fd278b8442 111 Gene3D G3DSA:1.10.260.40 5 79 4.5E-11 T 13-10-2018 SJPD1_0579 9f466d64e61721599e5a2e5f6bdb2810 257 SUPERFAMILY SSF52540 2 250 6.61E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0579 9f466d64e61721599e5a2e5f6bdb2810 257 SMART SM00382 27 237 5.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_0579 9f466d64e61721599e5a2e5f6bdb2810 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 228 250 4.6E-6 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal SJPD1_0579 9f466d64e61721599e5a2e5f6bdb2810 257 Pfam PF00005 ABC transporter 19 178 2.6E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 SJPD1_0579 9f466d64e61721599e5a2e5f6bdb2810 257 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 13-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 SJPD1_0579 9f466d64e61721599e5a2e5f6bdb2810 257 Gene3D G3DSA:3.40.50.300 1 250 2.8E-64 T 13-10-2018 SJPD1_2723 370ac5529adf12a466c0ca89f3f04a63 364 Pfam PF12698 ABC-2 family transporter protein 20 355 1.1E-41 T 13-10-2018 SJPD1_1642 c8ad4e9f072c95468da881bea33a976a 283 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 11 281 8.1E-90 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 SJPD1_1642 c8ad4e9f072c95468da881bea33a976a 283 Pfam PF05681 Fumarate hydratase (Fumerase) 11 281 7.4E-102 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 SJPD1_1605 4029a54c20afd4ad471dd988594587f0 215 Gene3D G3DSA:1.10.1760.20 1 212 4.9E-72 T 13-10-2018 SJPD1_1605 4029a54c20afd4ad471dd988594587f0 215 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 207 5.2E-62 T 13-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 SJPD1_2216 50f2b9f6d6ad4a303b475895ff9d17ae 246 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 21 183 1.2E-46 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 SJPD1_2216 50f2b9f6d6ad4a303b475895ff9d17ae 246 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SJPD1_2216 50f2b9f6d6ad4a303b475895ff9d17ae 246 Pfam PF01066 CDP-alcohol phosphatidyltransferase 16 79 2.7E-14 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 SJPD1_2216 50f2b9f6d6ad4a303b475895ff9d17ae 246 Gene3D G3DSA:1.20.120.1760 5 136 3.6E-16 T 13-10-2018 SJPD1_0492 27bf5d9d802d754dae017aa580e787c3 187 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 6 187 1.7E-70 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_0492 27bf5d9d802d754dae017aa580e787c3 187 Gene3D G3DSA:3.40.50.10990 1 167 7.9E-65 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_0492 27bf5d9d802d754dae017aa580e787c3 187 SUPERFAMILY SSF142695 3 165 5.75E-49 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_0492 27bf5d9d802d754dae017aa580e787c3 187 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 187 35.752 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_0492 27bf5d9d802d754dae017aa580e787c3 187 Pfam PF00925 GTP cyclohydrolase II 8 163 6.0E-56 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 SJPD1_1399 3d922b41f0eede84f28ebf220892aabc 132 Gene3D G3DSA:1.10.3680.10 4 127 2.7E-13 T 13-10-2018 IPR029024 TerB-like SJPD1_1399 3d922b41f0eede84f28ebf220892aabc 132 SUPERFAMILY SSF158682 7 111 7.06E-15 T 13-10-2018 IPR029024 TerB-like SJPD1_2691 604128ca4a0a76387225454b869271d8 347 Pfam PF13289 SIR2-like domain 106 275 2.7E-15 T 13-10-2018 IPR039444 SIR2-like domain SJPD1_1030 4adb183131f639ea4d90de1872032a9a 347 SUPERFAMILY SSF53807 22 307 1.77E-50 T 13-10-2018 SJPD1_1030 4adb183131f639ea4d90de1872032a9a 347 Pfam PF01497 Periplasmic binding protein 89 279 1.2E-16 T 13-10-2018 IPR002491 ABC transporter periplasmic binding domain SJPD1_1030 4adb183131f639ea4d90de1872032a9a 347 Gene3D G3DSA:1.20.58.2180 159 331 9.1E-64 T 13-10-2018 SJPD1_1030 4adb183131f639ea4d90de1872032a9a 347 Gene3D G3DSA:3.40.50.1980 183 286 9.1E-64 T 13-10-2018 SJPD1_1030 4adb183131f639ea4d90de1872032a9a 347 Gene3D G3DSA:3.40.50.1980 19 153 2.5E-39 T 13-10-2018 SJPD1_1548 02989ecb5e0bc74a1a36c3b272e24634 132 SUPERFAMILY SSF50475 4 119 6.02E-11 T 13-10-2018 SJPD1_1548 02989ecb5e0bc74a1a36c3b272e24634 132 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 20 74 1.3E-5 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 SJPD1_1548 02989ecb5e0bc74a1a36c3b272e24634 132 Gene3D G3DSA:2.30.110.10 2 120 2.2E-23 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_1958 63dc8715a3b614715a72674a7f63ed0e 75 Pfam PF04023 FeoA domain 3 73 1.9E-15 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 SJPD1_1958 63dc8715a3b614715a72674a7f63ed0e 75 SMART SM00899 2 74 4.9E-17 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 SJPD1_1958 63dc8715a3b614715a72674a7f63ed0e 75 SUPERFAMILY SSF50037 4 74 3.2E-15 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal SJPD1_1958 63dc8715a3b614715a72674a7f63ed0e 75 Gene3D G3DSA:2.30.30.90 1 74 6.2E-19 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain SJPD1_1525 cde28e7370699886258657161f2f7bd1 85 Pfam PF04071 Cysteine-rich small domain 3 82 1.3E-27 T 13-10-2018 IPR007212 Cysteine-rich small domain SJPD1_1468 1631e8927e576774a151d8d26641351f 269 SUPERFAMILY SSF52540 31 239 2.51E-21 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1468 1631e8927e576774a151d8d26641351f 269 SMART SM00382 40 177 2.1E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1468 1631e8927e576774a151d8d26641351f 269 Pfam PF13401 AAA domain 42 154 6.9E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain SJPD1_1468 1631e8927e576774a151d8d26641351f 269 Gene3D G3DSA:3.40.50.300 24 166 3.5E-12 T 13-10-2018 SJPD1_1434 7a9b24eeb1f2a5033f884fb63cd66f2b 433 Gene3D G3DSA:1.20.1600.10 23 427 6.1E-51 T 13-10-2018 SJPD1_1434 7a9b24eeb1f2a5033f884fb63cd66f2b 433 Pfam PF02321 Outer membrane efflux protein 238 416 7.9E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1434 7a9b24eeb1f2a5033f884fb63cd66f2b 433 Pfam PF02321 Outer membrane efflux protein 21 213 4.8E-16 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 SJPD1_1434 7a9b24eeb1f2a5033f884fb63cd66f2b 433 SUPERFAMILY SSF56954 4 421 2.88E-52 T 13-10-2018 SJPD1_2156 ea519e58862b0acbc5ac7e22d36de990 91 Pfam PF02597 ThiS family 26 80 1.2E-9 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 SJPD1_2156 ea519e58862b0acbc5ac7e22d36de990 91 SUPERFAMILY SSF54285 26 78 1.45E-8 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp SJPD1_2224 032560172074be5fd729c9b6b6520df2 717 Gene3D G3DSA:3.40.1380.40 423 588 7.0E-59 T 13-10-2018 SJPD1_2224 032560172074be5fd729c9b6b6520df2 717 Pfam PF02516 Oligosaccharyl transferase STT3 subunit 79 476 7.3E-37 T 13-10-2018 IPR003674 Oligosaccharyl transferase, STT3 subunit GO:0004576|GO:0006486|GO:0016020 SJPD1_1043 37a4a379f4b0b2f3c64d716e1ed2f121 284 Pfam PF01226 Formate/nitrite transporter 8 273 7.6E-62 T 13-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 SJPD1_1043 37a4a379f4b0b2f3c64d716e1ed2f121 284 Gene3D G3DSA:1.20.1080.10 1 268 8.9E-72 T 13-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 SJPD1_0152 6dc99ffa5d30866fe1044c02306891eb 393 SUPERFAMILY SSF111352 8 365 3.53E-98 T 13-10-2018 SJPD1_0152 6dc99ffa5d30866fe1044c02306891eb 393 Gene3D G3DSA:1.10.3430.10 1 392 1.0E-117 T 13-10-2018 IPR029020 Ammonium/urea transporter SJPD1_0152 6dc99ffa5d30866fe1044c02306891eb 393 Pfam PF00909 Ammonium Transporter Family 14 385 1.9E-98 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 SJPD1_1027 fab45dfabb03ab6149ec5c856db9907b 162 PIRSF PIRSF003174 3 161 1.5E-65 T 13-10-2018 IPR010292 Uncharacterised protein family CreA SJPD1_1027 fab45dfabb03ab6149ec5c856db9907b 162 Pfam PF05981 CreA protein 27 157 2.3E-58 T 13-10-2018 IPR010292 Uncharacterised protein family CreA SJPD1_1073 b43a5c23b3f39080190d642877fda41f 320 Gene3D G3DSA:1.20.1630.10 7 271 9.6E-13 T 13-10-2018 SJPD1_1073 b43a5c23b3f39080190d642877fda41f 320 Pfam PF03916 Polysulphide reductase, NrfD 13 318 1.8E-60 T 13-10-2018 IPR005614 NrfD family SJPD1_2891 dc6924b19097e915233677023997c998 322 Pfam PF11335 Protein of unknown function (DUF3137) 170 314 9.6E-36 T 13-10-2018 IPR021484 Protein of unknown function DUF3137 SJPD1_0783 589bbfda9144c7c8388cb1ab083db9e0 241 Pfam PF04172 LrgB-like family 26 236 1.3E-63 T 13-10-2018 IPR007300 CidB/LrgB family SJPD1_0517 06c908dc93a7072a13ac9c305255a65c 250 PRINTS PR01805 VacJ lipoprotein signature 46 59 5.7E-20 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 SJPD1_0517 06c908dc93a7072a13ac9c305255a65c 250 PRINTS PR01805 VacJ lipoprotein signature 114 131 5.7E-20 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 SJPD1_0517 06c908dc93a7072a13ac9c305255a65c 250 PRINTS PR01805 VacJ lipoprotein signature 151 168 5.7E-20 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 SJPD1_0517 06c908dc93a7072a13ac9c305255a65c 250 PRINTS PR01805 VacJ lipoprotein signature 63 79 5.7E-20 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 SJPD1_0517 06c908dc93a7072a13ac9c305255a65c 250 Pfam PF04333 MlaA lipoprotein 46 246 9.5E-64 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 SJPD1_0978 d26c1ca2e9948a7cd25a4f90b5190537 158 Pfam PF13280 WYL domain 4 156 8.9E-19 T 13-10-2018 IPR026881 WYL domain SJPD1_2727 60be5fc429cb0f2d28b8c43ebf14b324 117 SUPERFAMILY SSF48498 11 90 9.78E-13 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily SJPD1_2727 60be5fc429cb0f2d28b8c43ebf14b324 117 Gene3D G3DSA:1.10.357.10 1 116 2.4E-24 T 13-10-2018 SJPD1_2727 60be5fc429cb0f2d28b8c43ebf14b324 117 Pfam PF09209 Domain of unknown function (DUF1956) 12 102 8.1E-13 T 13-10-2018 IPR015292 Transcription regulator YbiH, C-terminal SJPD1_1320 816a5843ea43d928668fad0ec0a5bbeb 130 Gene3D G3DSA:2.60.40.730 3 130 7.2E-23 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 SJPD1_1320 816a5843ea43d928668fad0ec0a5bbeb 130 Pfam PF01880 Desulfoferrodoxin 22 121 1.2E-23 T 13-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 SJPD1_1320 816a5843ea43d928668fad0ec0a5bbeb 130 SUPERFAMILY SSF49367 15 122 2.22E-25 T 13-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 SJPD1_0914 9e203b02bb70b41c84164b61d276dc45 203 Pfam PF13309 HTH domain 139 199 3.1E-15 T 13-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain SJPD1_0914 9e203b02bb70b41c84164b61d276dc45 203 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 5 105 1.0E-19 T 13-10-2018 IPR013559 YheO-like SJPD1_0914 9e203b02bb70b41c84164b61d276dc45 203 Pfam PF08348 YheO-like PAS domain 5 108 5.9E-24 T 13-10-2018 IPR013559 YheO-like SJPD1_0856 c5f83c74c256a9639ba33382af5e7308 223 Pfam PF09335 SNARE associated Golgi protein 73 190 8.0E-29 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_1155 e206079ef65c6409194087b585e7d42f 328 Pfam PF06144 DNA polymerase III, delta subunit 20 182 8.0E-11 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 SJPD1_1155 e206079ef65c6409194087b585e7d42f 328 SUPERFAMILY SSF52540 13 199 1.06E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_0550 23c3b3924b2fe5a5c6d6648061afd9e6 249 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 12 229 6.3E-13 T 13-10-2018 SJPD1_0632 1f3b632ec798b8db1558b29c941de3c0 316 Pfam PF13432 Tetratricopeptide repeat 210 271 9.0E-7 T 13-10-2018 SJPD1_0632 1f3b632ec798b8db1558b29c941de3c0 316 Gene3D G3DSA:1.25.40.10 209 316 2.3E-15 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_0632 1f3b632ec798b8db1558b29c941de3c0 316 SUPERFAMILY SSF48452 199 313 1.04E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 SJPD1_2304 aa809504574e231849464157caf9ae7d 198 ProDom PD105539 COIL PRECURSOR AQ_678 COILED SIGNAL 16 197 2.0E-19 T 13-10-2018 SJPD1_2896 23b64846624a4961a0b7f948dbfc02a9 589 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 506 587 3.1E-14 T 13-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain SJPD1_2896 23b64846624a4961a0b7f948dbfc02a9 589 SUPERFAMILY SSF117143 84 549 8.5E-38 T 13-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like SJPD1_2896 23b64846624a4961a0b7f948dbfc02a9 589 Pfam PF00460 Flagella basal body rod protein 5 35 2.3E-6 T 13-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 SJPD1_2896 23b64846624a4961a0b7f948dbfc02a9 589 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 3 569 2.5E-59 T 13-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G SJPD1_2552 5f96235c2dbed1143724d0b7b744e377 233 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 230 4.4E-11 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 SJPD1_2552 5f96235c2dbed1143724d0b7b744e377 233 SUPERFAMILY SSF161098 12 225 2.88E-30 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2552 5f96235c2dbed1143724d0b7b744e377 233 Gene3D G3DSA:1.10.3720.10 3 231 9.4E-30 T 13-10-2018 IPR035906 MetI-like superfamily SJPD1_2447 a5ae78899f9dc76ed2c5cfe1cb5dcb96 141 SUPERFAMILY SSF53098 1 135 8.35E-43 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily SJPD1_2447 a5ae78899f9dc76ed2c5cfe1cb5dcb96 141 Pfam PF00075 RNase H 2 135 7.7E-39 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 SJPD1_2447 a5ae78899f9dc76ed2c5cfe1cb5dcb96 141 Gene3D G3DSA:3.30.420.10 1 140 7.0E-45 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 SJPD1_1083 ea13a3feee9634e8c80ecd52234010fb 276 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 29 258 5.6E-16 T 13-10-2018 SJPD1_2581 303b762ab71e087f4c9c2228875915c2 103 Gene3D G3DSA:3.30.70.120 3 98 1.1E-10 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal SJPD1_2581 303b762ab71e087f4c9c2228875915c2 103 Pfam PF02641 Uncharacterized ACR, COG1993 14 86 2.4E-8 T 13-10-2018 IPR003793 Domain of unknown function DUF190 SJPD1_2581 303b762ab71e087f4c9c2228875915c2 103 SUPERFAMILY SSF54913 1 100 6.11E-16 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta SJPD1_2565 7830e747d901a30949c94e7e2b37e37e 344 Gene3D G3DSA:3.20.20.30 1 341 2.0E-68 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 SJPD1_2565 7830e747d901a30949c94e7e2b37e37e 344 Pfam PF00296 Luciferase-like monooxygenase 1 303 1.4E-41 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 SJPD1_2565 7830e747d901a30949c94e7e2b37e37e 344 SUPERFAMILY SSF51679 1 336 2.0E-61 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 SJPD1_1278 d093a640017fee47c93489b6bf0c6bb7 199 Gene3D G3DSA:2.30.110.10 1 183 8.7E-38 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 SJPD1_1278 d093a640017fee47c93489b6bf0c6bb7 199 SUPERFAMILY SSF50475 1 172 1.8E-34 T 13-10-2018 SJPD1_1278 d093a640017fee47c93489b6bf0c6bb7 199 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 14 161 4.3E-18 T 13-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 5 482 8.2E-173 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 235 259 4.2E-40 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 375 401 4.2E-40 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 160 184 4.2E-40 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 323 342 4.2E-40 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 130 149 4.2E-40 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0182 f96f8167a02f0c84da261f36ec43d5ab 508 Pfam PF00361 Proton-conducting membrane transporter 126 416 7.8E-69 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0715 e5677faf8b9ec315a05711b2ce116ab8 151 Pfam PF06271 RDD family 18 144 1.7E-22 T 13-10-2018 IPR010432 RDD SJPD1_2846 f27deb69ea5d61dd72fbdbeab178c0d2 82 Gene3D G3DSA:3.30.1450.10 17 57 4.4E-5 T 13-10-2018 IPR037873 BamE-like SJPD1_2846 f27deb69ea5d61dd72fbdbeab178c0d2 82 Pfam PF07467 Beta-lactamase inhibitor (BLIP) 17 54 4.9E-5 T 13-10-2018 IPR009099 Beta-lactamase-inhibitor protein BLIP SJPD1_0785 a453db16f56ffcf316a4d316834fabd9 606 Pfam PF02705 K+ potassium transporter 14 541 7.1E-158 T 13-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 SJPD1_1908 f6c396009ef7485bc9beb55491a60d79 209 Pfam PF01810 LysE type translocator 23 207 9.5E-35 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_0067 4c1393168089e8860a2c9088e936f142 99 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 22 94 3.2E-31 T 13-10-2018 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 SJPD1_2332 f977b4c18e336e842c5d769e8f676ff8 107 SUPERFAMILY SSF51182 26 104 4.35E-9 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily SJPD1_0219 f5a7ff732e43e6e736448161fa924143 959 Pfam PF05359 Domain of Unknown Function (DUF748) 144 291 3.2E-17 T 13-10-2018 IPR008023 Protein of unknown function DUF748 SJPD1_0219 f5a7ff732e43e6e736448161fa924143 959 Pfam PF05359 Domain of Unknown Function (DUF748) 575 717 3.8E-33 T 13-10-2018 IPR008023 Protein of unknown function DUF748 SJPD1_0219 f5a7ff732e43e6e736448161fa924143 959 Pfam PF05359 Domain of Unknown Function (DUF748) 358 506 5.0E-23 T 13-10-2018 IPR008023 Protein of unknown function DUF748 SJPD1_1541 fbff03d05cce54c38866b96888fecaad 252 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 2 246 2.4E-67 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 SJPD1_1541 fbff03d05cce54c38866b96888fecaad 252 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 2 244 1.8E-59 T 13-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 SJPD1_1589 52f62e1d4f5dfb16a92793d83bb20a50 454 SUPERFAMILY SSF51569 3 445 2.64E-201 T 13-10-2018 SJPD1_1589 52f62e1d4f5dfb16a92793d83bb20a50 454 Pfam PF01474 Class-II DAHP synthetase family 4 441 2.9E-206 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 SJPD1_1589 52f62e1d4f5dfb16a92793d83bb20a50 454 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 4 448 3.7E-216 T 13-10-2018 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 SJPD1_0046 03cb8ed58b5740d503148f9bb95310f7 631 Pfam PF10592 AIPR protein 267 581 7.3E-63 T 13-10-2018 IPR018891 Abortive bacteriophage infection, resistance SJPD1_0103 fb939dc213a22405ddd8a306017af857 262 Pfam PF02698 DUF218 domain 77 253 1.6E-20 T 13-10-2018 IPR003848 Domain of unknown function DUF218 SJPD1_2371 ec1a2e6b2ce1319c4cf2e297bf9e3b99 129 SUPERFAMILY SSF142906 12 124 1.57E-40 T 13-10-2018 IPR038056 YjbR-like superfamily SJPD1_2371 ec1a2e6b2ce1319c4cf2e297bf9e3b99 129 Gene3D G3DSA:3.90.1150.30 12 129 3.3E-43 T 13-10-2018 IPR038056 YjbR-like superfamily SJPD1_2371 ec1a2e6b2ce1319c4cf2e297bf9e3b99 129 Pfam PF04237 YjbR 25 113 3.2E-25 T 13-10-2018 IPR007351 Uncharacterised protein YjbR SJPD1_0831 61b914ec2c614049a1b3d6358ec721ee 98 Pfam PF02325 YGGT family 17 84 1.2E-18 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 SJPD1_0360 e0fd22f4df377cede47eb9119a3f9968 437 Gene3D G3DSA:1.20.1250.20 19 237 4.0E-36 T 13-10-2018 SJPD1_0360 e0fd22f4df377cede47eb9119a3f9968 437 Gene3D G3DSA:1.20.1250.20 238 435 1.2E-16 T 13-10-2018 SJPD1_0360 e0fd22f4df377cede47eb9119a3f9968 437 SUPERFAMILY SSF103473 11 431 3.14E-62 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_0360 e0fd22f4df377cede47eb9119a3f9968 437 Pfam PF07690 Major Facilitator Superfamily 65 378 1.3E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2789 cc922d07a0ee532d1fe22bb1b3043ebd 260 Gene3D G3DSA:3.40.50.1820 45 252 6.4E-22 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_2789 cc922d07a0ee532d1fe22bb1b3043ebd 260 Pfam PF00561 alpha/beta hydrolase fold 91 173 4.3E-8 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 SJPD1_2789 cc922d07a0ee532d1fe22bb1b3043ebd 260 SUPERFAMILY SSF53474 27 249 5.96E-26 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold SJPD1_0634 3c8385c06cba81b3382211022fd8ec40 241 SUPERFAMILY SSF52540 12 135 7.14E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_1665 24f9e90272d276dd62633448b5cc89e6 112 Pfam PF11948 Protein of unknown function (DUF3465) 22 112 5.5E-40 T 13-10-2018 IPR021856 Protein of unknown function DUF3465 SJPD1_2559 93fa8a218048d52710b3be93d509dcef 65 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 4 26 4.6E-4 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_0225 ac2465decd9d1944a84d631d0ba8d747 248 Pfam PF04085 rod shape-determining protein MreC 152 243 1.4E-14 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 SJPD1_0225 ac2465decd9d1944a84d631d0ba8d747 248 Gene3D G3DSA:2.40.10.350 160 232 8.7E-11 T 13-10-2018 SJPD1_0376 d0f2653cf4371e1c79dffc9aed6022a8 390 Pfam PF13289 SIR2-like domain 123 348 3.2E-11 T 13-10-2018 IPR039444 SIR2-like domain SJPD1_0344 01f26a91b5bdf4e7ffda380efa75e059 290 Gene3D G3DSA:3.40.50.300 23 263 3.1E-54 T 13-10-2018 SJPD1_0344 01f26a91b5bdf4e7ffda380efa75e059 290 PIRSF PIRSF003092 1 290 5.4E-70 T 13-10-2018 IPR025501 ATP binding protein MinD SJPD1_0344 01f26a91b5bdf4e7ffda380efa75e059 290 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 23 262 5.2E-26 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 SJPD1_0344 01f26a91b5bdf4e7ffda380efa75e059 290 SUPERFAMILY SSF52540 23 283 7.81E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2582 1f169348de34bd852abe55dd3de362a1 150 Pfam PF07681 DoxX 17 97 2.1E-17 T 13-10-2018 IPR032808 DoxX family SJPD1_2057 ebdd047fc0800c0edefaef076b8bed8c 650 Gene3D G3DSA:3.20.20.80 50 319 3.9E-13 T 13-10-2018 SJPD1_2057 ebdd047fc0800c0edefaef076b8bed8c 650 SUPERFAMILY SSF51445 39 306 8.95E-49 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily SJPD1_1785 dd30684ed4d7dc6882e9196cca9f3238 62 Pfam PF08410 Domain of unknown function (DUF1737) 2 50 2.4E-21 T 13-10-2018 IPR013619 Domain of unknown function DUF1737 SJPD1_0377 44db1c4164954e2553c739464726d418 614 Pfam PF01935 Domain of unknown function DUF87 144 389 3.9E-17 T 13-10-2018 IPR002789 Helicase HerA, central domain SJPD1_0377 44db1c4164954e2553c739464726d418 614 Gene3D G3DSA:3.40.50.300 398 608 3.0E-42 T 13-10-2018 SJPD1_0377 44db1c4164954e2553c739464726d418 614 Gene3D G3DSA:3.40.50.300 129 294 1.2E-19 T 13-10-2018 SJPD1_0377 44db1c4164954e2553c739464726d418 614 SUPERFAMILY SSF52540 135 600 2.01E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase SJPD1_2217 d86c13973b2efdd8e4571df96cd31ea1 219 Pfam PF02666 Phosphatidylserine decarboxylase 52 208 7.8E-5 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 SJPD1_1247 c6752f7c36ccde1ab2d8e2e2cf7d81b4 143 Pfam PF03270 Protein of unknown function, DUF269 25 142 2.7E-37 T 13-10-2018 IPR004952 Uncharacterised protein family UPF0460 SJPD1_1247 c6752f7c36ccde1ab2d8e2e2cf7d81b4 143 PIRSF PIRSF005788 1 143 1.1E-42 T 13-10-2018 IPR004952 Uncharacterised protein family UPF0460 SJPD1_1247 c6752f7c36ccde1ab2d8e2e2cf7d81b4 143 TIGRFAM TIGR02935 TIGR02935: probable nitrogen fixation protein 6 142 1.1E-39 T 13-10-2018 IPR004952 Uncharacterised protein family UPF0460 SJPD1_1247 c6752f7c36ccde1ab2d8e2e2cf7d81b4 143 Gene3D G3DSA:1.10.3100.20 1 143 2.3E-45 T 13-10-2018 SJPD1_1860 f8fa1d675c21e677c1ba17a57ac22fdd 127 Pfam PF01934 Protein of unknown function DUF86 27 122 5.4E-13 T 13-10-2018 IPR008201 Protein of unknown function DUF86 SJPD1_2563 fde9766353faf33ac02bd4a91f68ca0d 338 Gene3D G3DSA:1.10.3470.10 2 337 1.4E-90 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_2563 fde9766353faf33ac02bd4a91f68ca0d 338 Pfam PF01032 FecCD transport family 16 330 5.5E-76 T 13-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 SJPD1_2563 fde9766353faf33ac02bd4a91f68ca0d 338 SUPERFAMILY SSF81345 4 330 3.27E-68 T 13-10-2018 IPR037294 ABC transporter, BtuC-like SJPD1_2538 3ba992a0eb1a04cd567863c13bf21e52 195 Pfam PF09335 SNARE associated Golgi protein 29 141 1.5E-14 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_2387 c4791a667ec932757c4ca65b8eebebda 70 Pfam PF13179 Family of unknown function (DUF4006) 1 64 1.9E-30 T 13-10-2018 IPR025065 Protein of unknown function DUF4006 SJPD1_1912 2053ed8d31ae01751aea3e61df7f6647 195 Hamap MF_01515 UPF0316 protein . 13 181 27.977 T 13-10-2018 IPR022930 Protein of unknown function UPF0316 SJPD1_1912 2053ed8d31ae01751aea3e61df7f6647 195 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 122 170 1.1E-5 T 13-10-2018 IPR019264 Domain of unknown function DUF2179 SJPD1_2384 9909d1943742bb3426d304b0a2439404 164 Pfam PF05751 FixH 11 143 7.9E-8 T 13-10-2018 IPR008620 Nitrogen fixation protein FixH SJPD1_2489 13d60a3987fa1aa0f282e609a8b6bc8f 275 SUPERFAMILY SSF143631 2 261 2.01E-56 T 13-10-2018 IPR003374 ApbE-like superfamily SJPD1_2489 13d60a3987fa1aa0f282e609a8b6bc8f 275 Gene3D G3DSA:3.10.520.20 2 271 1.9E-56 T 13-10-2018 SJPD1_2489 13d60a3987fa1aa0f282e609a8b6bc8f 275 Pfam PF02424 ApbE family 11 260 4.4E-50 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 SJPD1_0835 ede63bdd8b82422e9ad75a8dc82f658a 141 Pfam PF02743 Cache domain 3 98 2.9E-12 T 13-10-2018 IPR033479 Double Cache domain 1 SJPD1_0835 ede63bdd8b82422e9ad75a8dc82f658a 141 Gene3D G3DSA:3.30.450.20 1 116 1.4E-15 T 13-10-2018 SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Gene3D G3DSA:2.20.110.10 28 84 1.1E-7 T 13-10-2018 SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Gene3D G3DSA:2.20.110.10 85 196 4.7E-15 T 13-10-2018 SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Pfam PF07661 MORN repeat variant 116 135 1.5E-4 T 13-10-2018 IPR011652 MORN variant SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Pfam PF07661 MORN repeat variant 92 112 8.5E-4 T 13-10-2018 IPR011652 MORN variant SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Pfam PF07661 MORN repeat variant 140 159 0.77 T 13-10-2018 IPR011652 MORN variant SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Pfam PF07661 MORN repeat variant 67 88 8.4E-6 T 13-10-2018 IPR011652 MORN variant SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 Pfam PF07661 MORN repeat variant 44 63 8.7E-4 T 13-10-2018 IPR011652 MORN variant SJPD1_0892 f35b870ce77d4f3bd1e2e42cf1d027c6 198 SUPERFAMILY SSF82185 42 128 3.66E-24 T 13-10-2018 SJPD1_0328 4c9c334c06a5f35531ffb597ef10cc62 62 Pfam PF05082 Rop-like 3 57 3.6E-11 T 13-10-2018 IPR007774 Putative nitrogen fixation protein SJPD1_0268 901f3529dfd734c48e07b979c5a245bc 278 Pfam PF01882 Protein of unknown function DUF58 33 112 2.3E-10 T 13-10-2018 IPR002881 Domain of unknown function DUF58 SJPD1_0464 31666025ba2051ad030dd2a64536161f 165 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 159 5.0E-34 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0464 31666025ba2051ad030dd2a64536161f 165 Gene3D G3DSA:1.20.120.1200 2 161 1.0E-41 T 13-10-2018 SJPD1_0146 33b6ec19c403bc6ed649840195dbee16 212 SUPERFAMILY SSF53335 65 203 6.79E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0146 33b6ec19c403bc6ed649840195dbee16 212 Gene3D G3DSA:3.40.50.150 40 208 1.2E-20 T 13-10-2018 SJPD1_0146 33b6ec19c403bc6ed649840195dbee16 212 Pfam PF13489 Methyltransferase domain 65 200 1.8E-20 T 13-10-2018 SJPD1_2475 ac9fa8b7c5f91c698663a503dff30f62 169 SUPERFAMILY SSF160387 66 132 1.05E-10 T 13-10-2018 SJPD1_2873 d12d85437547391df1dfd9d35d600cc9 438 Pfam PF02397 Bacterial sugar transferase 241 432 1.6E-60 T 13-10-2018 IPR003362 Bacterial sugar transferase SJPD1_0788 3a6322ac151ae8dadb1cbbd9f793c940 368 Pfam PF01098 Cell cycle protein 18 354 9.7E-86 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 SJPD1_2768 05913c4f38580d7e406fafbd62e0e5a2 153 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 17 139 2.9E-24 T 13-10-2018 IPR010181 CGCAxxGCC motif SJPD1_2768 05913c4f38580d7e406fafbd62e0e5a2 153 SUPERFAMILY SSF48695 13 84 6.7E-5 T 13-10-2018 IPR036280 Multiheme cytochrome superfamily SJPD1_2768 05913c4f38580d7e406fafbd62e0e5a2 153 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 18 117 4.5E-17 T 13-10-2018 IPR010181 CGCAxxGCC motif SJPD1_0452 fcd0328638c54c1703bddbb8e5032af2 92 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 4 22 7.8E-6 T 13-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal SJPD1_2684 96c292c815f582f73c4edf03eb12c0a8 272 Pfam PF06067 Domain of unknown function (DUF932) 25 252 1.2E-30 T 13-10-2018 IPR026325 Protein of unknown function DUF932 SJPD1_0620 2b9811f2cec22cd48d7721b97bef3d8d 140 Pfam PF00430 ATP synthase B/B' CF(0) 14 120 7.9E-15 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 SJPD1_2000 b7c9c66d6880005d5ed64b9f6fa9efa5 130 Pfam PF04519 Polymer-forming cytoskeletal 18 113 1.7E-20 T 13-10-2018 IPR007607 Bactofilin A/B SJPD1_0694 1263d9942a6aae82edc45182272c0cd2 177 Pfam PF02674 Colicin V production protein 7 152 2.1E-26 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 SJPD1_2296 1fe0b56f35c7f4d0e2cb17c4df7b539b 376 Pfam PF03916 Polysulphide reductase, NrfD 17 318 9.6E-43 T 13-10-2018 IPR005614 NrfD family SJPD1_0199 8eea8f92af40b0b63fd781d429119392 308 Gene3D G3DSA:1.10.260.40 4 95 3.5E-5 T 13-10-2018 SJPD1_2101 e81a80c17c90caf2daee7dd35b13a45f 509 Pfam PF00999 Sodium/hydrogen exchanger family 8 403 2.6E-46 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 SJPD1_1179 5dfa002c98075ab9f78fb5e4496eb17c 222 Pfam PF04366 Las17-binding protein actin regulator 96 201 2.2E-27 T 13-10-2018 IPR007461 Ysc84 actin-binding domain SJPD1_0495 20185091af0d9b2b4a70023da9416834 162 Pfam PF10788 Protein of unknown function (DUF2603) 13 146 7.5E-47 T 13-10-2018 IPR019724 Uncharacterised protein family UPF0763 SJPD1_0495 20185091af0d9b2b4a70023da9416834 162 Hamap MF_02110 UPF0763 protein . 10 154 26.569 T 13-10-2018 IPR019724 Uncharacterised protein family UPF0763 SJPD1_0102 f9233a7957ec70bc6b1b05eb79e68548 95 Gene3D G3DSA:3.30.70.100 1 90 1.1E-26 T 13-10-2018 SJPD1_0102 f9233a7957ec70bc6b1b05eb79e68548 95 SUPERFAMILY SSF54909 1 95 2.08E-20 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel SJPD1_0850 66429a5a8c6ce4a262c8e139072c73f8 459 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 125 1.4E-18 T 13-10-2018 IPR029095 NarX-like, N-terminal SJPD1_2041 5e8b733981cf1553bc372cd497641069 239 Pfam PF02591 C4-type zinc ribbon domain 198 230 5.4E-11 T 13-10-2018 IPR003743 C4-type zinc ribbon domain SJPD1_2724 e7512032b133e624e9f974cb4c8e4910 363 Pfam PF12698 ABC-2 family transporter protein 24 355 8.0E-37 T 13-10-2018 SJPD1_0749 fd8f0a7e5098b079276843d91c92749d 171 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 3 144 1.8E-41 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_0749 fd8f0a7e5098b079276843d91c92749d 171 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 144 3.0E-49 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_0749 fd8f0a7e5098b079276843d91c92749d 171 PIRSF PIRSF004638 1 148 7.5E-45 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_1168 11c4032b1c9ca19a74c2498abbc7238f 202 Pfam PF03458 UPF0126 domain 94 167 1.8E-22 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 SJPD1_1168 11c4032b1c9ca19a74c2498abbc7238f 202 Pfam PF03458 UPF0126 domain 6 81 2.7E-18 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 SJPD1_1128 984ee1f443cd9c8b8212357e95d00c93 237 Pfam PF09335 SNARE associated Golgi protein 60 176 6.3E-13 T 13-10-2018 IPR032816 SNARE associated Golgi protein SJPD1_1250 4dbc27dcb141df19ca1eec725625bc30 121 Pfam PF04319 NifZ domain 25 98 1.1E-24 T 13-10-2018 IPR007415 Nitrogenase MoFe maturation protein, NifZ GO:0009399 SJPD1_2539 bdab10115c2ff6a44c56c80b682078f2 192 Pfam PF14235 Domain of unknown function (DUF4337) 32 187 1.1E-34 T 13-10-2018 IPR025570 Protein of unknown function DUF4337 SJPD1_2004 d0721f5075c14f46b2da7e265f543ef3 162 Pfam PF04390 Lipopolysaccharide-assembly 27 151 2.3E-8 T 13-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 SJPD1_2190 f99c5928987d2681ab89212aebc0c9b7 208 Pfam PF01810 LysE type translocator 16 199 3.2E-28 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 SJPD1_2350 67a375be3cc2da3327d28a6ff02b84be 390 Gene3D G3DSA:1.20.1250.20 3 382 8.3E-40 T 13-10-2018 SJPD1_2350 67a375be3cc2da3327d28a6ff02b84be 390 SUPERFAMILY SSF103473 6 381 1.44E-43 T 13-10-2018 IPR036259 MFS transporter superfamily SJPD1_2350 67a375be3cc2da3327d28a6ff02b84be 390 Pfam PF07690 Major Facilitator Superfamily 14 350 3.7E-31 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 SJPD1_2036 1595afa76b6c236170f2d682bc0a5b7a 81 Pfam PF13083 KH domain 4 76 1.4E-18 T 13-10-2018 SJPD1_1823 000e398615aed308f3671cef2c3dfa08 363 Pfam PF12698 ABC-2 family transporter protein 24 355 1.7E-40 T 13-10-2018 SJPD1_2082 b4d34cf127811e85469e8d1867cc7f04 396 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 42 164 2.5E-8 T 13-10-2018 IPR038731 Glycosyltransferase RgtA/B/C/D-like SJPD1_1949 fb30672b27a3f922939b2e5a2699af36 202 Pfam PF07277 SapC 3 200 3.1E-52 T 13-10-2018 IPR010836 SapC SJPD1_2612 8df33b650adcadb76a846b91e7e56b06 160 Gene3D G3DSA:2.50.20.10 13 160 4.4E-7 T 13-10-2018 SJPD1_1944 e837e71467d552e0792d3ddde1df9c4f 187 Pfam PF06226 Protein of unknown function (DUF1007) 27 139 2.5E-6 T 13-10-2018 IPR010412 Protein of unknown function DUF1007 SJPD1_1787 2121cbe00bb85679c767033e093871eb 399 Pfam PF05940 NnrS protein 21 398 2.2E-59 T 13-10-2018 IPR010266 NnrS SJPD1_2394 27b0d2cffe3b08d8c184b6ce88acbaf6 197 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 6 186 1.0E-39 T 13-10-2018 IPR039447 Urease accessory protein UreH-like, transmembrane domain SJPD1_1249 a236285accafb2d6be777e8b4c2e7bec 110 Pfam PF03206 Nitrogen fixation protein NifW 3 78 3.5E-16 T 13-10-2018 IPR004893 Nitrogen fixation protein NifW GO:0009399 SJPD1_1516 ea027b061e16ae1dea9473c4947b0ce2 111 Pfam PF14358 Domain of unknown function (DUF4405) 5 58 1.4E-6 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 SJPD1_2830 1677d75b26092ae15c5689851dc6db25 150 SUPERFAMILY SSF55729 24 148 1.46E-22 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase SJPD1_2830 1677d75b26092ae15c5689851dc6db25 150 Pfam PF00583 Acetyltransferase (GNAT) family 37 126 1.3E-13 T 13-10-2018 IPR000182 GNAT domain SJPD1_2830 1677d75b26092ae15c5689851dc6db25 150 Gene3D G3DSA:3.40.630.30 4 149 1.9E-31 T 13-10-2018 SJPD1_0045 39481dca7457e1a03a89ea29a6d9b024 326 Pfam PF14390 Putative PD-(D/E)XK family member, (DUF4420) 8 310 5.0E-43 T 13-10-2018 IPR025534 Putative PD-(D/E)XK family member (DUF4420) SJPD1_0981 6aab1ab2c808c5d1f76e2675f0eebb70 311 Pfam PF00882 Zinc dependent phospholipase C 7 188 5.6E-25 T 13-10-2018 IPR029002 Phospholipase C/D Reactome: R-HSA-163125 SJPD1_2790 ef43833800eaf00dc152cdc395e6a529 195 Gene3D G3DSA:3.40.50.150 6 183 7.4E-12 T 13-10-2018 SJPD1_2790 ef43833800eaf00dc152cdc395e6a529 195 SUPERFAMILY SSF53335 3 182 5.58E-13 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase SJPD1_0352 b442212045b8db29480d3f794a320f51 230 Pfam PF08889 WbqC-like protein family 8 222 1.4E-77 T 13-10-2018 IPR014985 WbqC-like protein family SJPD1_1211 45c519da25dc4f273632db7d36ae281a 146 Pfam PF04191 Phospholipid methyltransferase 49 127 8.6E-10 T 13-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 SJPD1_1211 45c519da25dc4f273632db7d36ae281a 146 Gene3D G3DSA:1.20.120.1630 1 146 9.7E-27 T 13-10-2018 SJPD1_2226 b5eb20a5f964d201caf2605cdd77cfa0 312 SUPERFAMILY SSF53448 6 231 1.22E-29 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2226 b5eb20a5f964d201caf2605cdd77cfa0 312 Pfam PF00535 Glycosyl transferase family 2 9 124 6.5E-10 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 SJPD1_2226 b5eb20a5f964d201caf2605cdd77cfa0 312 Gene3D G3DSA:3.90.550.10 6 237 1.7E-23 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases SJPD1_2751 694cdc01cd20c57e526ee262824561e4 128 Pfam PF13115 YtkA-like 31 110 3.1E-22 T 13-10-2018 IPR032693 YtkA-like domain SJPD1_2396 dcfd42d60ef6817ae6bb83b8382d0f6c 184 Pfam PF04368 Protein of unknown function (DUF507) 1 182 6.8E-71 T 13-10-2018 IPR007463 Protein of unknown function DUF507 SJPD1_0750 d390e7bb610f0c9524c00d3d648b58a2 100 Hamap MF_02117 N(2)-fixation sustaining protein CowN [cowN]. 2 100 17.154 T 13-10-2018 IPR024899 Nitrogen fixation-sustaining protein CowN GO:0009399 SJPD1_0706 13656f9ebfad69c51e0f07a3f9a0ab31 390 Gene3D G3DSA:1.20.120.160 284 390 1.5E-5 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_0706 13656f9ebfad69c51e0f07a3f9a0ab31 390 SUPERFAMILY SSF47226 286 385 6.39E-7 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 SJPD1_1976 68d858c926fe6c382ee02151ce3b5830 269 Pfam PF15436 Plasminogen-binding protein pgbA N-terminal 26 238 1.2E-68 T 13-10-2018 IPR029276 Plasminogen-binding protein PgbA, N-terminal SJPD1_1294 afb318d8069064177f20499752cf3dbd 96 SUPERFAMILY SSF140453 9 82 5.49E-5 T 13-10-2018 IPR036689 ESAT-6-like superfamily SJPD1_0180 7c26253777cb270380269bb1a490affd 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 96 7.1E-22 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like SJPD1_0180 7c26253777cb270380269bb1a490affd 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.677 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 SJPD1_1494 9a5e3c57ef109b461cff92e3089e70f2 217 Gene3D G3DSA:3.30.2210.10 96 212 1.3E-14 T 13-10-2018 SJPD1_0356 cdc3580304cd079d4b3efd9afac1b2a3 274 Pfam PF14358 Domain of unknown function (DUF4405) 7 73 1.8E-13 T 13-10-2018 IPR025517 Domain of unknown function DUF4405 SJPD1_1772 6da617b2a93d20b6e8f9daaa0cf2dc66 216 Pfam PF01553 Acyltransferase 52 163 3.5E-21 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 SJPD1_1772 6da617b2a93d20b6e8f9daaa0cf2dc66 216 SUPERFAMILY SSF69593 5 211 1.18E-33 T 13-10-2018 SJPD1_1772 6da617b2a93d20b6e8f9daaa0cf2dc66 216 SMART SM00563 52 166 1.7E-28 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 SJPD1_1816 f80e82f9f796e8d74b6fa37c8bef452f 254 Gene3D G3DSA:3.90.1720.10 68 239 9.3E-11 T 13-10-2018 SJPD1_1760 81e45f3fd06ba7327ca536f9200ee62e 397 Pfam PF13941 MutL protein 39 297 1.5E-25 T 13-10-2018 IPR006230 Protein MutL SJPD1_1313 f22d60aa81a2e081a2a43c2abf1ec677 65 Pfam PF04328 Selenoprotein, putative 5 65 3.3E-28 T 13-10-2018 IPR007423 Selenoprotein, putative SJPD1_2145 d41a90d3a9f70d241f7169449f695cec 307 Pfam PF00146 NADH dehydrogenase 8 302 1.5E-50 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0974 40a785b6f96f2482cdb84a4a5b41b8dd 498 Pfam PF11074 Domain of unknown function(DUF2779) 302 426 6.0E-41 T 13-10-2018 IPR021301 Domain of unknown functionDUF2779 SJPD1_1234 2f349eea2fe244ad164682f641aa9e7c 127 SUPERFAMILY SSF53146 1 116 2.35E-23 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_1234 2f349eea2fe244ad164682f641aa9e7c 127 Gene3D G3DSA:3.30.420.130 1 118 7.4E-26 T 13-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily SJPD1_1234 2f349eea2fe244ad164682f641aa9e7c 127 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 10 102 2.5E-13 T 13-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis SJPD1_0478 58424f9a6f2c9e50a555c136d6628852 120 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 119 1.5E-30 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_0478 58424f9a6f2c9e50a555c136d6628852 120 Gene3D G3DSA:1.20.58.1610 2 120 1.0E-34 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 SJPD1_1671 dc81d265e6b4b1a90d23f6b90953a5a0 141 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 141 4.8E-32 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_1671 dc81d265e6b4b1a90d23f6b90953a5a0 141 PIRSF PIRSF004638 1 141 9.5E-34 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 SJPD1_0745 9dcc57d409ff4f01ded97428e36934cc 135 Pfam PF11026 Protein of unknown function (DUF2721) 6 121 1.4E-33 T 13-10-2018 IPR021279 Protein of unknown function DUF2721 SJPD1_2847 98347c3553204839286e08503e740672 501 Pfam PF11853 Protein of unknown function (DUF3373) 89 501 6.2E-118 T 13-10-2018 IPR021803 Protein of unknown function DUF3373 SJPD1_1314 a0d6f2a5562e9fcd40c8cf9577d5255f 707 Pfam PF02554 Carbon starvation protein CstA 36 405 8.2E-164 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 SJPD1_1314 a0d6f2a5562e9fcd40c8cf9577d5255f 707 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 473 601 8.2E-35 T 13-10-2018 IPR025299 CstA, C-terminal domain SJPD1_2631 d074b25365f672fe0a9aacafc99d58f7 131 Gene3D G3DSA:3.10.490.10 1 131 7.6E-47 T 13-10-2018 SJPD1_2060 ead93c17331d622acdef83533517e465 160 Pfam PF07603 Protein of unknown function (DUF1566) 32 160 2.4E-16 T 13-10-2018 IPR011460 Protein of unknown function DUF1566 SJPD1_2890 28322b209ebef61cef4d65e94d77ade2 151 Pfam PF03748 Flagellar basal body-associated protein FliL 57 148 4.3E-13 T 13-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 SJPD1_1564 197e72fbb7612ca1599c90d0e83afda0 135 Gene3D G3DSA:1.10.260.40 1 71 4.4E-9 T 13-10-2018 SJPD1_2609 af6784e247c44e85af025acb74ca132a 288 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 92 283 7.7E-14 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 SJPD1_1904 fd2eeb67a10cfa2e18d95bbe3efd4758 183 Pfam PF01794 Ferric reductase like transmembrane component 35 142 1.4E-13 T 13-10-2018 IPR013130 Ferric reductase transmembrane component-like domain SJPD1_1106 e008ca7b59f791fb025d0f6c97b3a73e 328 Pfam PF01757 Acyltransferase family 13 314 3.7E-17 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 SJPD1_0784 971ffaeec9f1a790bc3e26a2d0717c41 142 Pfam PF03788 LrgA family 32 124 9.1E-21 T 13-10-2018 IPR005538 LrgA/CidA family GO:0016021 SJPD1_0968 06d2c229aba94bf90dddab2bb8a29c55 211 Pfam PF05818 Enterobacterial TraT complement resistance protein 26 210 1.8E-28 T 13-10-2018 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 SJPD1_0405 5950c2bfe41ea708688e3b4654de96fe 613 Pfam PF05787 Bacterial protein of unknown function (DUF839) 171 462 2.2E-19 T 13-10-2018 IPR008557 Protein of unknown function DUF839