locus-tag class description Sdiek1_0001 PF00308 Bacterial dnaA protein Sdiek1_0001 PF08299 Bacterial dnaA protein helix-turn-helix Sdiek1_0001 PF11638 DnaA N-terminal domain Sdiek1_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Sdiek1_0002 PF02767 DNA polymerase III beta subunit, central domain Sdiek1_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Sdiek1_0003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0003 PF01751 Toprim domain Sdiek1_0003 PF00204 DNA gyrase B Sdiek1_0003 PF00986 DNA gyrase B subunit, carboxyl terminus Sdiek1_0004 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0004 PF00563 EAL domain Sdiek1_0005 PF14489 QueF-like protein Sdiek1_0007 PF03167 Uracil DNA glycosylase superfamily Sdiek1_0008 PF00633 Helix-hairpin-helix motif Sdiek1_0008 PF14815 NUDIX domain Sdiek1_0008 PF00730 HhH-GPD superfamily base excision DNA repair protein Sdiek1_0009 PF00571 CBS domain Sdiek1_0009 PF00005 ABC transporter Sdiek1_0010 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_0011 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Sdiek1_0012 PF07690 Major Facilitator Superfamily Sdiek1_0013 PF00939 Sodium:sulfate symporter transmembrane region Sdiek1_0014 PF05681 Fumarate hydratase (Fumerase) Sdiek1_0015 PF05683 Fumarase C-terminus Sdiek1_0017 PF00330 Aconitase family (aconitate hydratase) Sdiek1_0024 PF02899 Phage integrase, N-terminal SAM-like domain Sdiek1_0024 PF00589 Phage integrase family Sdiek1_0026 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0028 PF02080 TrkA-C domain Sdiek1_0028 PF06826 Predicted Permease Membrane Region Sdiek1_0030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Sdiek1_0030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sdiek1_0031 PF00857 Isochorismatase family Sdiek1_0032 PF00440 Bacterial regulatory proteins, tetR family Sdiek1_0032 PF16925 Tetracyclin repressor-like, C-terminal domain Sdiek1_0035 PF08241 Methyltransferase domain Sdiek1_0037 PF01875 Memo-like protein Sdiek1_0039 PF01871 AMMECR1 Sdiek1_0044 PF07883 Cupin domain Sdiek1_0044 PF12833 Helix-turn-helix domain Sdiek1_0046 PF05728 Uncharacterised protein family (UPF0227) Sdiek1_0048 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0048 PF00384 Molybdopterin oxidoreductase Sdiek1_0048 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Sdiek1_0048 PF12838 4Fe-4S dicluster domain Sdiek1_0048 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0066 PF07057 DNA helicase TraI Sdiek1_0066 PF18272 single-stranded DNA binding TraI N-terminal subdomain Sdiek1_0066 PF08751 TrwC relaxase Sdiek1_0066 PF18340 DNA relaxase TraI 2B/2B-like domain Sdiek1_0074 PF00920 Dehydratase family Sdiek1_0075 PF01914 MarC family integral membrane protein Sdiek1_0077 PF00483 Nucleotidyl transferase Sdiek1_0078 PF00117 Glutamine amidotransferase class-I Sdiek1_0078 PF06418 CTP synthase N-terminus Sdiek1_0079 PF17768 RecJ OB domain Sdiek1_0079 PF02272 DHHA1 domain Sdiek1_0079 PF01368 DHH family Sdiek1_0081 PF00795 Carbon-nitrogen hydrolase Sdiek1_0082 PF00268 Ribonucleotide reductase, small chain Sdiek1_0085 PF03477 ATP cone domain Sdiek1_0085 PF13597 Anaerobic ribonucleoside-triphosphate reductase Sdiek1_0086 PF01177 Asp/Glu/Hydantoin racemase Sdiek1_0087 PF02867 Ribonucleotide reductase, barrel domain Sdiek1_0087 PF03477 ATP cone domain Sdiek1_0087 PF00317 Ribonucleotide reductase, all-alpha domain Sdiek1_0088 PF10397 Adenylosuccinate lyase C-terminus Sdiek1_0088 PF00206 Lyase Sdiek1_0089 PF00849 RNA pseudouridylate synthase Sdiek1_0090 PF01557 Fumarylacetoacetate (FAA) hydrolase family Sdiek1_0091 PF04055 Radical SAM superfamily Sdiek1_0093 PF00977 Histidine biosynthesis protein Sdiek1_0094 PF00398 Ribosomal RNA adenine dimethylase Sdiek1_0095 PF00753 Metallo-beta-lactamase superfamily Sdiek1_0095 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Sdiek1_0095 PF17770 Ribonuclease J C-terminal domain Sdiek1_0096 PF00571 CBS domain Sdiek1_0096 PF01380 SIS domain Sdiek1_0097 PF01479 S4 domain Sdiek1_0097 PF00849 RNA pseudouridylate synthase Sdiek1_0098 PF16193 AAA C-terminal domain Sdiek1_0098 PF01661 Macro domain Sdiek1_0098 PF12002 MgsA AAA+ ATPase C terminal Sdiek1_0098 PF05496 Holliday junction DNA helicase RuvB P-loop domain Sdiek1_0100 PF01312 FlhB HrpN YscU SpaS Family Sdiek1_0103 PF00586 AIR synthase related protein, N-terminal domain Sdiek1_0103 PF02769 AIR synthase related protein, C-terminal domain Sdiek1_0104 PF01121 Dephospho-CoA kinase Sdiek1_0105 PF01678 Diaminopimelate epimerase Sdiek1_0107 PF03462 PCRF domain Sdiek1_0107 PF00472 RF-1 domain Sdiek1_0108 PF01649 Ribosomal protein S20 Sdiek1_0109 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Sdiek1_0109 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Sdiek1_0109 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Sdiek1_0109 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Sdiek1_0110 PF01252 Signal peptidase (SPase) II Sdiek1_0112 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Sdiek1_0112 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Sdiek1_0112 PF03129 Anticodon binding domain Sdiek1_0113 PF05198 Translation initiation factor IF-3, N-terminal domain Sdiek1_0113 PF00707 Translation initiation factor IF-3, C-terminal domain Sdiek1_0114 PF01632 Ribosomal protein L35 Sdiek1_0115 PF00453 Ribosomal protein L20 Sdiek1_0116 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Sdiek1_0116 PF12801 4Fe-4S binding domain Sdiek1_0116 PF13746 4Fe-4S dicluster domain Sdiek1_0118 PF01165 Ribosomal protein S21 Sdiek1_0121 PF03738 Glutathionylspermidine synthase preATP-grasp Sdiek1_0122 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Sdiek1_0122 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sdiek1_0123 PF04461 Protein of unknown function (DUF520) Sdiek1_0125 PF08019 Phosphoethanolamine transferase EptA/EptB Sdiek1_0125 PF00884 Sulfatase Sdiek1_0131 PF13426 PAS domain Sdiek1_0131 PF00672 HAMP domain Sdiek1_0131 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0132 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0132 PF00072 Response regulator receiver domain Sdiek1_0136 PF00005 ABC transporter Sdiek1_0137 PF02405 Permease MlaE Sdiek1_0138 PF01625 Peptide methionine sulfoxide reductase Sdiek1_0140 PF01914 MarC family integral membrane protein Sdiek1_0141 PF01914 MarC family integral membrane protein Sdiek1_0142 PF17200 Single Cache domain 2 Sdiek1_0142 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0142 PF00672 HAMP domain Sdiek1_0144 PF11849 Domain of unknown function (DUF3369) Sdiek1_0148 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0148 PF00989 PAS fold Sdiek1_0148 PF13188 PAS domain Sdiek1_0148 PF13426 PAS domain Sdiek1_0148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0149 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0149 PF00072 Response regulator receiver domain Sdiek1_0150 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Sdiek1_0151 PF00543 Nitrogen regulatory protein P-II Sdiek1_0152 PF00909 Ammonium Transporter Family Sdiek1_0153 PF00248 Aldo/keto reductase family Sdiek1_0154 PF01979 Amidohydrolase family Sdiek1_0156 PF00072 Response regulator receiver domain Sdiek1_0156 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0159 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_0160 PF00497 Bacterial extracellular solute-binding proteins, family 3 Sdiek1_0161 PF00005 ABC transporter Sdiek1_0167 PF01261 Xylose isomerase-like TIM barrel Sdiek1_0169 PF00501 AMP-binding enzyme Sdiek1_0169 PF13193 AMP-binding enzyme C-terminal domain Sdiek1_0170 PF01434 Peptidase family M41 Sdiek1_0170 PF00004 ATPase family associated with various cellular activities (AAA) Sdiek1_0170 PF17862 AAA+ lid domain Sdiek1_0170 PF06480 FtsH Extracellular Sdiek1_0171 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Sdiek1_0172 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_0173 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Sdiek1_0174 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Sdiek1_0177 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Sdiek1_0177 PF00384 Molybdopterin oxidoreductase Sdiek1_0177 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0177 PF13237 4Fe-4S dicluster domain Sdiek1_0177 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0178 PF00146 NADH dehydrogenase Sdiek1_0179 PF12838 4Fe-4S dicluster domain Sdiek1_0180 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Sdiek1_0181 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sdiek1_0182 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Sdiek1_0182 PF00361 Proton-conducting membrane transporter Sdiek1_0183 PF00361 Proton-conducting membrane transporter Sdiek1_0184 PF00361 Proton-conducting membrane transporter Sdiek1_0186 PF00171 Aldehyde dehydrogenase family Sdiek1_0188 PF01040 UbiA prenyltransferase family Sdiek1_0191 PF16591 Helical bimodular sensor domain Sdiek1_0191 PF00672 HAMP domain Sdiek1_0191 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0192 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0192 PF08447 PAS fold Sdiek1_0193 PF06463 Molybdenum Cofactor Synthesis C Sdiek1_0193 PF04055 Radical SAM superfamily Sdiek1_0194 PF00994 Probable molybdopterin binding domain Sdiek1_0194 PF03454 MoeA C-terminal region (domain IV) Sdiek1_0194 PF03453 MoeA N-terminal region (domain I and II) Sdiek1_0196 PF04452 RNA methyltransferase Sdiek1_0197 PF01197 Ribosomal protein L31 Sdiek1_0198 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Sdiek1_0199 PF00588 SpoU rRNA Methylase family Sdiek1_0199 PF08032 RNA 2'-O ribose methyltransferase substrate binding Sdiek1_0202 PF00155 Aminotransferase class I and II Sdiek1_0203 PF03447 Homoserine dehydrogenase, NAD binding domain Sdiek1_0203 PF01842 ACT domain Sdiek1_0203 PF00742 Homoserine dehydrogenase Sdiek1_0204 PF02021 Uncharacterised protein family UPF0102 Sdiek1_0205 PF00085 Thioredoxin Sdiek1_0206 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_0207 PF01113 Dihydrodipicolinate reductase, N-terminus Sdiek1_0207 PF05173 Dihydrodipicolinate reductase, C-terminus Sdiek1_0208 PF00156 Phosphoribosyl transferase domain Sdiek1_0209 PF04055 Radical SAM superfamily Sdiek1_0209 PF16199 Radical_SAM C-terminal domain Sdiek1_0212 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Sdiek1_0212 PF01502 Phosphoribosyl-AMP cyclohydrolase Sdiek1_0214 PF01063 Amino-transferase class IV Sdiek1_0215 PF00171 Aldehyde dehydrogenase family Sdiek1_0216 PF00578 AhpC/TSA family Sdiek1_0218 PF02677 Epoxyqueuosine reductase QueH Sdiek1_0219 PF07977 FabA-like domain Sdiek1_0220 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Sdiek1_0220 PF00132 Bacterial transferase hexapeptide (six repeats) Sdiek1_0221 PF10431 C-terminal, D2-small domain, of ClpB protein Sdiek1_0221 PF07724 AAA domain (Cdc48 subfamily) Sdiek1_0221 PF06689 ClpX C4-type zinc finger Sdiek1_0224 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Sdiek1_0224 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Sdiek1_0224 PF02142 MGS-like domain Sdiek1_0228 PF00899 ThiF family Sdiek1_0229 PF01975 Survival protein SurE Sdiek1_0230 PF02684 Lipid-A-disaccharide synthetase Sdiek1_0231 PF03449 Transcription elongation factor, N-terminal Sdiek1_0231 PF01272 Transcription elongation factor, GreA/GreB, C-term Sdiek1_0232 PF01118 Semialdehyde dehydrogenase, NAD binding domain Sdiek1_0232 PF02774 Semialdehyde dehydrogenase, dimerisation domain Sdiek1_0234 PF00072 Response regulator receiver domain Sdiek1_0234 PF01584 CheW-like domain Sdiek1_0235 PF02895 Signal transducing histidine kinase, homodimeric domain Sdiek1_0235 PF07194 P2 response regulator binding domain Sdiek1_0235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0235 PF01627 Hpt domain Sdiek1_0235 PF01584 CheW-like domain Sdiek1_0236 PF01584 CheW-like domain Sdiek1_0240 PF00923 Transaldolase/Fructose-6-phosphate aldolase Sdiek1_0241 PF00437 Type II/IV secretion system protein Sdiek1_0242 PF01386 Ribosomal L25p family Sdiek1_0242 PF14693 Ribosomal protein TL5, C-terminal domain Sdiek1_0243 PF01195 Peptidyl-tRNA hydrolase Sdiek1_0245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Sdiek1_0245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Sdiek1_0246 PF01842 ACT domain Sdiek1_0246 PF01817 Chorismate mutase type II Sdiek1_0246 PF00800 Prephenate dehydratase Sdiek1_0247 PF00155 Aminotransferase class I and II Sdiek1_0248 PF01514 Secretory protein of YscJ/FliF family Sdiek1_0248 PF08345 Flagellar M-ring protein C-terminal Sdiek1_0249 PF14842 FliG N-terminal domain Sdiek1_0249 PF14841 FliG middle domain Sdiek1_0249 PF01706 FliG C-terminal domain Sdiek1_0251 PF02779 Transketolase, pyrimidine binding domain Sdiek1_0251 PF02780 Transketolase, C-terminal domain Sdiek1_0251 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Sdiek1_0252 PF01475 Ferric uptake regulator family Sdiek1_0253 PF10417 C-terminal domain of 1-Cys peroxiredoxin Sdiek1_0253 PF00578 AhpC/TSA family Sdiek1_0256 PF00037 4Fe-4S binding domain Sdiek1_0257 PF00334 Nucleoside diphosphate kinase Sdiek1_0259 PF01783 Ribosomal L32p protein family Sdiek1_0260 PF02504 Fatty acid synthesis protein Sdiek1_0261 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Sdiek1_0261 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Sdiek1_0262 PF17863 AAA lid domain Sdiek1_0262 PF07726 ATPase family associated with various cellular activities (AAA) Sdiek1_0266 PF00092 von Willebrand factor type A domain Sdiek1_0266 PF07584 Aerotolerance regulator N-terminal Sdiek1_0268 PF02153 Prephenate dehydrogenase Sdiek1_0268 PF01842 ACT domain Sdiek1_0269 PF01103 Surface antigen Sdiek1_0269 PF07244 Surface antigen variable number repeat Sdiek1_0271 PF00037 4Fe-4S binding domain Sdiek1_0272 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0273 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0273 PF00072 Response regulator receiver domain Sdiek1_0275 PF02660 Glycerol-3-phosphate acyltransferase Sdiek1_0276 PF02445 Quinolinate synthetase A protein Sdiek1_0277 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Sdiek1_0277 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Sdiek1_0278 PF01312 FlhB HrpN YscU SpaS Family Sdiek1_0281 PF03775 Septum formation inhibitor MinC, C-terminal domain Sdiek1_0282 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Sdiek1_0284 PF00288 GHMP kinases N terminal domain Sdiek1_0284 PF08544 GHMP kinases C terminal Sdiek1_0286 PF04760 Translation initiation factor IF-2, N-terminal region Sdiek1_0286 PF11987 Translation-initiation factor 2 Sdiek1_0286 PF00009 Elongation factor Tu GTP binding domain Sdiek1_0287 PF04760 Translation initiation factor IF-2, N-terminal region Sdiek1_0287 PF00009 Elongation factor Tu GTP binding domain Sdiek1_0287 PF11987 Translation-initiation factor 2 Sdiek1_0288 PF02033 Ribosome-binding factor A Sdiek1_0289 PF02576 RimP N-terminal domain Sdiek1_0289 PF17384 RimP C-terminal SH3 domain Sdiek1_0290 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Sdiek1_0290 PF01872 RibD C-terminal domain Sdiek1_0293 PF08447 PAS fold Sdiek1_0293 PF00563 EAL domain Sdiek1_0293 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0293 PF08448 PAS fold Sdiek1_0294 PF00313 'Cold-shock' DNA-binding domain Sdiek1_0295 PF00672 HAMP domain Sdiek1_0295 PF13426 PAS domain Sdiek1_0295 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0296 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0296 PF00072 Response regulator receiver domain Sdiek1_0298 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Sdiek1_0300 PF04055 Radical SAM superfamily Sdiek1_0300 PF16199 Radical_SAM C-terminal domain Sdiek1_0301 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0301 PF00384 Molybdopterin oxidoreductase Sdiek1_0301 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0301 PF10518 TAT (twin-arginine translocation) pathway signal sequence Sdiek1_0302 PF13247 4Fe-4S dicluster domain Sdiek1_0303 PF03916 Polysulphide reductase, NrfD Sdiek1_0304 PF08495 FIST N domain Sdiek1_0304 PF10442 FIST C domain Sdiek1_0304 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0304 PF00563 EAL domain Sdiek1_0305 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0305 PF00384 Molybdopterin oxidoreductase Sdiek1_0305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0306 PF13247 4Fe-4S dicluster domain Sdiek1_0307 PF03916 Polysulphide reductase, NrfD Sdiek1_0308 PF00072 Response regulator receiver domain Sdiek1_0308 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0309 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0309 PF00672 HAMP domain Sdiek1_0309 PF13426 PAS domain Sdiek1_0311 PF04055 Radical SAM superfamily Sdiek1_0311 PF06969 HemN C-terminal domain Sdiek1_0315 PF02472 Biopolymer transport protein ExbD/TolR Sdiek1_0316 PF01618 MotA/TolQ/ExbB proton channel family Sdiek1_0320 PF01368 DHH family Sdiek1_0320 PF02833 DHHA2 domain Sdiek1_0323 PF01209 ubiE/COQ5 methyltransferase family Sdiek1_0324 PF02601 Exonuclease VII, large subunit Sdiek1_0324 PF13742 OB-fold nucleic acid binding domain Sdiek1_0328 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0328 PF00563 EAL domain Sdiek1_0328 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_0329 PF00962 Adenosine/AMP deaminase Sdiek1_0331 PF12833 Helix-turn-helix domain Sdiek1_0331 PF06719 AraC-type transcriptional regulator N-terminus Sdiek1_0332 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Sdiek1_0333 PF03466 LysR substrate binding domain Sdiek1_0333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_0334 PF03601 Conserved hypothetical protein 698 Sdiek1_0335 PF00255 Glutathione peroxidase Sdiek1_0336 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Sdiek1_0336 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Sdiek1_0337 PF01343 Peptidase family S49 Sdiek1_0338 PF01979 Amidohydrolase family Sdiek1_0339 PF01220 Dehydroquinase class II Sdiek1_0340 PF00557 Metallopeptidase family M24 Sdiek1_0340 PF01321 Creatinase/Prolidase N-terminal domain Sdiek1_0341 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Sdiek1_0342 PF00448 SRP54-type protein, GTPase domain Sdiek1_0343 PF10609 NUBPL iron-transfer P-loop NTPase Sdiek1_0345 PF04542 Sigma-70 region 2 Sdiek1_0345 PF04545 Sigma-70, region 4 Sdiek1_0345 PF04539 Sigma-70 region 3 Sdiek1_0346 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Sdiek1_0346 PF02154 Flagellar motor switch protein FliM Sdiek1_0348 PF04509 CheC-like family Sdiek1_0348 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Sdiek1_0350 PF00535 Glycosyl transferase family 2 Sdiek1_0351 PF08889 WbqC-like protein family Sdiek1_0352 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Sdiek1_0356 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Sdiek1_0356 PF14572 Phosphoribosyl synthetase-associated domain Sdiek1_0357 PF00009 Elongation factor Tu GTP binding domain Sdiek1_0357 PF06421 GTP-binding protein LepA C-terminus Sdiek1_0357 PF03144 Elongation factor Tu domain 2 Sdiek1_0357 PF00679 Elongation factor G C-terminus Sdiek1_0358 PF00156 Phosphoribosyl transferase domain Sdiek1_0359 PF00083 Sugar (and other) transporter Sdiek1_0362 PF00521 DNA gyrase/topoisomerase IV, subunit A Sdiek1_0362 PF03989 DNA gyrase C-terminal domain, beta-propeller Sdiek1_0365 PF00072 Response regulator receiver domain Sdiek1_0365 PF02954 Bacterial regulatory protein, Fis family Sdiek1_0365 PF00158 Sigma-54 interaction domain Sdiek1_0366 PF02774 Semialdehyde dehydrogenase, dimerisation domain Sdiek1_0366 PF01118 Semialdehyde dehydrogenase, NAD binding domain Sdiek1_0368 PF01208 Uroporphyrinogen decarboxylase (URO-D) Sdiek1_0369 PF04055 Radical SAM superfamily Sdiek1_0371 PF16868 NMT1-like family Sdiek1_0373 PF00589 Phage integrase family Sdiek1_0373 PF13356 Arm DNA-binding domain Sdiek1_0377 PF02661 Fic/DOC family Sdiek1_0377 PF13784 Fic/DOC family N-terminal Sdiek1_0379 PF10544 T5orf172 domain Sdiek1_0385 PF02796 Helix-turn-helix domain of resolvase Sdiek1_0385 PF00239 Resolvase, N terminal domain Sdiek1_0390 PF03180 NLPA lipoprotein Sdiek1_0391 PF09383 NIL domain Sdiek1_0391 PF00005 ABC transporter Sdiek1_0392 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_0393 PF01384 Phosphate transporter family Sdiek1_0394 PF00056 lactate/malate dehydrogenase, NAD binding domain Sdiek1_0394 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Sdiek1_0395 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Sdiek1_0395 PF09363 XFP C-terminal domain Sdiek1_0395 PF09364 XFP N-terminal domain Sdiek1_0399 PF06445 GyrI-like small molecule binding domain Sdiek1_0399 PF12833 Helix-turn-helix domain Sdiek1_0400 PF00890 FAD binding domain Sdiek1_0400 PF14537 Cytochrome c3 Sdiek1_0409 PF00563 EAL domain Sdiek1_0409 PF08495 FIST N domain Sdiek1_0409 PF10442 FIST C domain Sdiek1_0409 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0413 PF00085 Thioredoxin Sdiek1_0420 PF09905 DNA-binding protein VF530 Sdiek1_0421 PF00106 short chain dehydrogenase Sdiek1_0422 PF13458 Periplasmic binding protein Sdiek1_0423 PF02653 Branched-chain amino acid transport system / permease component Sdiek1_0424 PF11862 Domain of unknown function (DUF3382) Sdiek1_0424 PF02653 Branched-chain amino acid transport system / permease component Sdiek1_0425 PF00005 ABC transporter Sdiek1_0425 PF12399 Branched-chain amino acid ATP-binding cassette transporter Sdiek1_0426 PF00005 ABC transporter Sdiek1_0428 PF03883 Peroxide stress protein YaaA Sdiek1_0433 PF00009 Elongation factor Tu GTP binding domain Sdiek1_0433 PF03143 Elongation factor Tu C-terminal domain Sdiek1_0433 PF03144 Elongation factor Tu domain 2 Sdiek1_0434 PF00471 Ribosomal protein L33 Sdiek1_0437 PF02357 Transcription termination factor nusG Sdiek1_0438 PF03946 Ribosomal protein L11, N-terminal domain Sdiek1_0438 PF00298 Ribosomal protein L11, RNA binding domain Sdiek1_0439 PF00687 Ribosomal protein L1p/L10e family Sdiek1_0440 PF00466 Ribosomal protein L10 Sdiek1_0441 PF16320 Ribosomal protein L7/L12 dimerisation domain Sdiek1_0441 PF00542 Ribosomal protein L7/L12 C-terminal domain Sdiek1_0442 PF10385 RNA polymerase beta subunit external 1 domain Sdiek1_0442 PF04565 RNA polymerase Rpb2, domain 3 Sdiek1_0442 PF04561 RNA polymerase Rpb2, domain 2 Sdiek1_0442 PF04563 RNA polymerase beta subunit Sdiek1_0442 PF04560 RNA polymerase Rpb2, domain 7 Sdiek1_0442 PF00562 RNA polymerase Rpb2, domain 6 Sdiek1_0443 PF04997 RNA polymerase Rpb1, domain 1 Sdiek1_0443 PF00623 RNA polymerase Rpb1, domain 2 Sdiek1_0443 PF04983 RNA polymerase Rpb1, domain 3 Sdiek1_0443 PF05000 RNA polymerase Rpb1, domain 4 Sdiek1_0443 PF04998 RNA polymerase Rpb1, domain 5 Sdiek1_0444 PF00164 Ribosomal protein S12/S23 Sdiek1_0445 PF00177 Ribosomal protein S7p/S5e Sdiek1_0446 PF00009 Elongation factor Tu GTP binding domain Sdiek1_0446 PF03764 Elongation factor G, domain IV Sdiek1_0446 PF03144 Elongation factor Tu domain 2 Sdiek1_0446 PF00679 Elongation factor G C-terminus Sdiek1_0446 PF14492 Elongation Factor G, domain II Sdiek1_0448 PF00892 EamA-like transporter family Sdiek1_0449 PF00248 Aldo/keto reductase family Sdiek1_0452 PF18364 Molybdopterin oxidoreductase N-terminal domain Sdiek1_0452 PF00384 Molybdopterin oxidoreductase Sdiek1_0452 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0454 PF00072 Response regulator receiver domain Sdiek1_0454 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Sdiek1_0456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0456 PF00072 Response regulator receiver domain Sdiek1_0456 PF08448 PAS fold Sdiek1_0456 PF13188 PAS domain Sdiek1_0456 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0457 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0457 PF02743 Cache domain Sdiek1_0457 PF00672 HAMP domain Sdiek1_0458 PF08447 PAS fold Sdiek1_0458 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0460 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0460 PF00384 Molybdopterin oxidoreductase Sdiek1_0460 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Sdiek1_0460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0461 PF00146 NADH dehydrogenase Sdiek1_0462 PF12838 4Fe-4S dicluster domain Sdiek1_0463 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Sdiek1_0464 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sdiek1_0465 PF00361 Proton-conducting membrane transporter Sdiek1_0465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Sdiek1_0466 PF00361 Proton-conducting membrane transporter Sdiek1_0467 PF00361 Proton-conducting membrane transporter Sdiek1_0468 PF00563 EAL domain Sdiek1_0468 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_0468 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0470 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Sdiek1_0470 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Sdiek1_0470 PF10531 SLBB domain Sdiek1_0472 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Sdiek1_0472 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Sdiek1_0473 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_0474 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Sdiek1_0477 PF01168 Alanine racemase, N-terminal domain Sdiek1_0477 PF00842 Alanine racemase, C-terminal domain Sdiek1_0481 PF02527 rRNA small subunit methyltransferase G Sdiek1_0482 PF17202 Single cache domain 3 Sdiek1_0482 PF00672 HAMP domain Sdiek1_0482 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0484 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Sdiek1_0484 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Sdiek1_0485 PF01741 Large-conductance mechanosensitive channel, MscL Sdiek1_0487 PF00925 GTP cyclohydrolase II Sdiek1_0488 PF00490 Delta-aminolevulinic acid dehydratase Sdiek1_0489 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Sdiek1_0489 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Sdiek1_0490 PF10788 Protein of unknown function (DUF2603) Sdiek1_0491 PF04055 Radical SAM superfamily Sdiek1_0491 PF06969 HemN C-terminal domain Sdiek1_0492 PF02754 Cysteine-rich domain Sdiek1_0498 PF00072 Response regulator receiver domain Sdiek1_0498 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0499 PF07690 Major Facilitator Superfamily Sdiek1_0500 PF02810 SEC-C motif Sdiek1_0502 PF00011 Hsp20/alpha crystallin family Sdiek1_0503 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0503 PF08448 PAS fold Sdiek1_0504 PF01790 Prolipoprotein diacylglyceryl transferase Sdiek1_0505 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdiek1_0506 PF00890 FAD binding domain Sdiek1_0506 PF02910 Fumarate reductase flavoprotein C-term Sdiek1_0507 PF13183 4Fe-4S dicluster domain Sdiek1_0507 PF13085 2Fe-2S iron-sulfur cluster binding domain Sdiek1_0508 PF00350 Dynamin family Sdiek1_0509 PF00350 Dynamin family Sdiek1_0510 PF01594 AI-2E family transporter Sdiek1_0511 PF17864 RuvB AAA lid domain Sdiek1_0511 PF05496 Holliday junction DNA helicase RuvB P-loop domain Sdiek1_0511 PF05491 RuvB C-terminal winged helix domain Sdiek1_0512 PF02548 Ketopantoate hydroxymethyltransferase Sdiek1_0514 PF00290 Tryptophan synthase alpha chain Sdiek1_0518 PF00318 Ribosomal protein S2 Sdiek1_0519 PF00889 Elongation factor TS Sdiek1_0520 PF00005 ABC transporter Sdiek1_0521 PF01311 Bacterial export proteins, family 1 Sdiek1_0523 PF00625 Guanylate kinase Sdiek1_0524 PF02416 mttA/Hcf106 family Sdiek1_0525 PF00750 tRNA synthetases class I (R) Sdiek1_0525 PF05746 DALR anticodon binding domain Sdiek1_0525 PF03485 Arginyl tRNA synthetase N terminal domain Sdiek1_0527 PF08495 FIST N domain Sdiek1_0527 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0527 PF10442 FIST C domain Sdiek1_0527 PF00563 EAL domain Sdiek1_0531 PF01467 Cytidylyltransferase-like Sdiek1_0532 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Sdiek1_0532 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sdiek1_0533 PF00162 Phosphoglycerate kinase Sdiek1_0534 PF00121 Triosephosphate isomerase Sdiek1_0536 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_0537 PF13184 NusA-like KH domain Sdiek1_0537 PF08529 NusA N-terminal domain Sdiek1_0539 PF01938 TRAM domain Sdiek1_0539 PF00919 Uncharacterized protein family UPF0004 Sdiek1_0539 PF04055 Radical SAM superfamily Sdiek1_0544 PF01171 PP-loop family Sdiek1_0545 PF00919 Uncharacterized protein family UPF0004 Sdiek1_0545 PF04055 Radical SAM superfamily Sdiek1_0546 PF02569 Pantoate-beta-alanine ligase Sdiek1_0547 PF03462 PCRF domain Sdiek1_0547 PF00472 RF-1 domain Sdiek1_0552 PF12169 DNA polymerase III subunits gamma and tau domain III Sdiek1_0552 PF12170 DNA polymerase III tau subunit V interacting with alpha Sdiek1_0553 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Sdiek1_0553 PF07498 Rho termination factor, N-terminal domain Sdiek1_0553 PF07497 Rho termination factor, RNA-binding domain Sdiek1_0554 PF01255 Putative undecaprenyl diphosphate synthase Sdiek1_0555 PF00563 EAL domain Sdiek1_0555 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0555 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_0556 PF03063 Prismane/CO dehydrogenase family Sdiek1_0557 PF08212 Lipocalin-like domain Sdiek1_0558 PF12102 Domain of unknown function (DUF3578) Sdiek1_0558 PF07728 AAA domain (dynein-related subfamily) Sdiek1_0562 PF03976 Polyphosphate kinase 2 (PPK2) Sdiek1_0566 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Sdiek1_0566 PF00355 Rieske [2Fe-2S] domain Sdiek1_0567 PF00032 Cytochrome b(C-terminal)/b6/petD Sdiek1_0567 PF00033 Cytochrome b/b6/petB Sdiek1_0570 PF00271 Helicase conserved C-terminal domain Sdiek1_0570 PF00270 DEAD/DEAH box helicase Sdiek1_0571 PF02447 GntP family permease Sdiek1_0572 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Sdiek1_0572 PF18381 YcaO cyclodehydratase C-terminal domain Sdiek1_0575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0575 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0575 PF02743 Cache domain Sdiek1_0576 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0576 PF00072 Response regulator receiver domain Sdiek1_0577 PF03480 Bacterial extracellular solute-binding protein, family 7 Sdiek1_0581 PF02653 Branched-chain amino acid transport system / permease component Sdiek1_0582 PF02653 Branched-chain amino acid transport system / permease component Sdiek1_0582 PF11862 Domain of unknown function (DUF3382) Sdiek1_0583 PF00005 ABC transporter Sdiek1_0583 PF12399 Branched-chain amino acid ATP-binding cassette transporter Sdiek1_0584 PF00005 ABC transporter Sdiek1_0585 PF05140 ResB-like family Sdiek1_0585 PF01578 Cytochrome C assembly protein Sdiek1_0593 PF02464 Competence-damaged protein Sdiek1_0593 PF00994 Probable molybdopterin binding domain Sdiek1_0593 PF18146 Damage-inducible protein CinA KH domain Sdiek1_0594 PF08264 Anticodon-binding domain of tRNA Sdiek1_0594 PF00133 tRNA synthetases class I (I, L, M and V) Sdiek1_0596 PF01425 Amidase Sdiek1_0597 PF00478 IMP dehydrogenase / GMP reductase domain Sdiek1_0597 PF00571 CBS domain Sdiek1_0598 PF00561 alpha/beta hydrolase fold Sdiek1_0599 PF02609 Exonuclease VII small subunit Sdiek1_0601 PF00899 ThiF family Sdiek1_0602 PF00155 Aminotransferase class I and II Sdiek1_0603 PF08245 Mur ligase middle domain Sdiek1_0603 PF02875 Mur ligase family, glutamate ligase domain Sdiek1_0603 PF01225 Mur ligase family, catalytic domain Sdiek1_0605 PF01713 Smr domain Sdiek1_0605 PF00488 MutS domain V Sdiek1_0606 PF01546 Peptidase family M20/M25/M40 Sdiek1_0606 PF07687 Peptidase dimerisation domain Sdiek1_0607 PF01042 Endoribonuclease L-PSP Sdiek1_0608 PF06039 Malate:quinone oxidoreductase (Mqo) Sdiek1_0609 PF13649 Methyltransferase domain Sdiek1_0612 PF03572 Peptidase family S41 Sdiek1_0612 PF01471 Putative peptidoglycan binding domain Sdiek1_0612 PF17820 PDZ domain Sdiek1_0615 PF00224 Pyruvate kinase, barrel domain Sdiek1_0615 PF00391 PEP-utilising enzyme, mobile domain Sdiek1_0615 PF02887 Pyruvate kinase, alpha/beta domain Sdiek1_0616 PF00829 Ribosomal prokaryotic L21 protein Sdiek1_0617 PF01016 Ribosomal L27 protein Sdiek1_0618 PF01926 50S ribosome-binding GTPase Sdiek1_0618 PF01018 GTP1/OBG Sdiek1_0619 PF00696 Amino acid kinase family Sdiek1_0620 PF02911 Formyl transferase, C-terminal domain Sdiek1_0620 PF00551 Formyl transferase Sdiek1_0622 PF13614 AAA domain Sdiek1_0623 PF17762 HTH domain found in ParB protein Sdiek1_0623 PF02195 ParB-like nuclease domain Sdiek1_0626 PF00430 ATP synthase B/B' CF(0) Sdiek1_0627 PF00213 ATP synthase delta (OSCP) subunit Sdiek1_0628 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Sdiek1_0628 PF00306 ATP synthase alpha/beta chain, C terminal domain Sdiek1_0628 PF02874 ATP synthase alpha/beta family, beta-barrel domain Sdiek1_0629 PF00231 ATP synthase Sdiek1_0630 PF02874 ATP synthase alpha/beta family, beta-barrel domain Sdiek1_0630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Sdiek1_0631 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Sdiek1_0632 PF01618 MotA/TolQ/ExbB proton channel family Sdiek1_0633 PF02472 Biopolymer transport protein ExbD/TolR Sdiek1_0635 PF04052 TolB amino-terminal domain Sdiek1_0636 PF01389 OmpA-like transmembrane domain Sdiek1_0636 PF00691 OmpA family Sdiek1_0638 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Sdiek1_0640 PF00698 Acyl transferase domain Sdiek1_0641 PF01048 Phosphorylase superfamily Sdiek1_0642 PF01171 PP-loop family Sdiek1_0644 PF04898 Glutamate synthase central domain Sdiek1_0644 PF01645 Conserved region in glutamate synthase Sdiek1_0644 PF01493 GXGXG motif Sdiek1_0644 PF00310 Glutamine amidotransferases class-II Sdiek1_0645 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_0645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Sdiek1_0647 PF01039 Carboxyl transferase domain Sdiek1_0647 PF17848 Acetyl-coA carboxylase zinc finger domain Sdiek1_0648 PF02590 Predicted SPOUT methyltransferase Sdiek1_0649 PF01258 Prokaryotic dksA/traR C4-type zinc finger Sdiek1_0651 PF01207 Dihydrouridine synthase (Dus) Sdiek1_0655 PF04509 CheC-like family Sdiek1_0655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Sdiek1_0657 PF00158 Sigma-54 interaction domain Sdiek1_0657 PF02954 Bacterial regulatory protein, Fis family Sdiek1_0661 PF03960 ArsC family Sdiek1_0665 PF01243 Pyridoxamine 5'-phosphate oxidase Sdiek1_0667 PF00440 Bacterial regulatory proteins, tetR family Sdiek1_0667 PF16925 Tetracyclin repressor-like, C-terminal domain Sdiek1_0668 PF02801 Beta-ketoacyl synthase, C-terminal domain Sdiek1_0668 PF00109 Beta-ketoacyl synthase, N-terminal domain Sdiek1_0669 PF04229 GrpB protein Sdiek1_0670 PF00583 Acetyltransferase (GNAT) family Sdiek1_0672 PF13667 ThiC-associated domain Sdiek1_0672 PF01964 Radical SAM ThiC family Sdiek1_0674 PF00324 Amino acid permease Sdiek1_0675 PF01925 Sulfite exporter TauE/SafE Sdiek1_0676 PF17755 UvrA DNA-binding domain Sdiek1_0676 PF17760 UvrA interaction domain Sdiek1_0676 PF00005 ABC transporter Sdiek1_0677 PF00375 Sodium:dicarboxylate symporter family Sdiek1_0678 PF00375 Sodium:dicarboxylate symporter family Sdiek1_0680 PF01367 5'-3' exonuclease, C-terminal SAM fold Sdiek1_0680 PF00476 DNA polymerase family A Sdiek1_0680 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Sdiek1_0681 PF02659 Putative manganese efflux pump Sdiek1_0684 PF00684 DnaJ central domain Sdiek1_0684 PF01556 DnaJ C terminal domain Sdiek1_0684 PF00226 DnaJ domain Sdiek1_0686 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0686 PF00072 Response regulator receiver domain Sdiek1_0687 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0687 PF00672 HAMP domain Sdiek1_0687 PF16750 Sensor domain of 2-component histidine kinase Sdiek1_0687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0688 PF13662 Toprim domain Sdiek1_0688 PF02132 RecR protein Sdiek1_0689 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0689 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_0689 PF00563 EAL domain Sdiek1_0690 PF02743 Cache domain Sdiek1_0690 PF00672 HAMP domain Sdiek1_0690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0691 PF00501 AMP-binding enzyme Sdiek1_0691 PF13193 AMP-binding enzyme C-terminal domain Sdiek1_0692 PF08501 Shikimate dehydrogenase substrate binding domain Sdiek1_0693 PF00425 chorismate binding enzyme Sdiek1_0693 PF04715 Anthranilate synthase component I, N terminal region Sdiek1_0696 PF00464 Serine hydroxymethyltransferase Sdiek1_0697 PF01336 OB-fold nucleic acid binding domain Sdiek1_0697 PF00152 tRNA synthetases class II (D, K and N) Sdiek1_0698 PF01475 Ferric uptake regulator family Sdiek1_0700 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0701 PF00437 Type II/IV secretion system protein Sdiek1_0702 PF02686 Glu-tRNAGln amidotransferase C subunit Sdiek1_0706 PF03309 Type III pantothenate kinase Sdiek1_0707 PF01634 ATP phosphoribosyltransferase Sdiek1_0708 PF00072 Response regulator receiver domain Sdiek1_0709 PF00672 HAMP domain Sdiek1_0709 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0709 PF01627 Hpt domain Sdiek1_0709 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Sdiek1_0709 PF00072 Response regulator receiver domain Sdiek1_0709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0712 PF02151 UvrB/uvrC motif Sdiek1_0712 PF01541 GIY-YIG catalytic domain Sdiek1_0712 PF08459 UvrC Helix-hairpin-helix N-terminal Sdiek1_0714 PF00890 FAD binding domain Sdiek1_0715 PF03600 Citrate transporter Sdiek1_0716 PF02540 NAD synthase Sdiek1_0716 PF00958 GMP synthase C terminal domain Sdiek1_0716 PF00117 Glutamine amidotransferase class-I Sdiek1_0718 PF02843 Phosphoribosylglycinamide synthetase, C domain Sdiek1_0718 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Sdiek1_0718 PF02844 Phosphoribosylglycinamide synthetase, N domain Sdiek1_0720 PF03968 OstA-like protein Sdiek1_0720 PF04453 LPS transport system D Sdiek1_0721 PF00575 S1 RNA binding domain Sdiek1_0721 PF01138 3' exoribonuclease family, domain 1 Sdiek1_0721 PF03725 3' exoribonuclease family, domain 2 Sdiek1_0721 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Sdiek1_0721 PF00013 KH domain Sdiek1_0722 PF00137 ATP synthase subunit C Sdiek1_0726 PF00364 Biotin-requiring enzyme Sdiek1_0727 PF01293 Phosphoenolpyruvate carboxykinase Sdiek1_0728 PF14698 Argininosuccinate lyase C-terminal Sdiek1_0728 PF00206 Lyase Sdiek1_0729 PF01230 HIT domain Sdiek1_0730 PF01409 tRNA synthetases class II core domain (F) Sdiek1_0730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Sdiek1_0731 PF03484 tRNA synthetase B5 domain Sdiek1_0731 PF03147 Ferredoxin-fold anticodon binding domain Sdiek1_0731 PF01588 Putative tRNA binding domain Sdiek1_0731 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Sdiek1_0732 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Sdiek1_0733 PF02401 LytB protein Sdiek1_0734 PF00575 S1 RNA binding domain Sdiek1_0736 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sdiek1_0736 PF01842 ACT domain Sdiek1_0736 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Sdiek1_0738 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_0739 PF00873 AcrB/AcrD/AcrF family Sdiek1_0740 PF00873 AcrB/AcrD/AcrF family Sdiek1_0743 PF09285 Elongation factor P, C-terminal Sdiek1_0743 PF08207 Elongation factor P (EF-P) KOW-like domain Sdiek1_0743 PF01132 Elongation factor P (EF-P) OB domain Sdiek1_0744 PF02743 Cache domain Sdiek1_0744 PF00672 HAMP domain Sdiek1_0744 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0746 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0746 PF02743 Cache domain Sdiek1_0746 PF00672 HAMP domain Sdiek1_0747 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0748 PF05188 MutS domain II Sdiek1_0748 PF05190 MutS family domain IV Sdiek1_0748 PF00488 MutS domain V Sdiek1_0748 PF01624 MutS domain I Sdiek1_0748 PF05192 MutS domain III Sdiek1_0752 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_0752 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0752 PF00563 EAL domain Sdiek1_0756 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Sdiek1_0757 PF02321 Outer membrane efflux protein Sdiek1_0758 PF00873 AcrB/AcrD/AcrF family Sdiek1_0759 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_0760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0760 PF08447 PAS fold Sdiek1_0761 PF00672 HAMP domain Sdiek1_0761 PF00672 HAMP domain Sdiek1_0761 PF17200 Single Cache domain 2 Sdiek1_0761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0761 PF17200 Single Cache domain 2 Sdiek1_0763 PF07733 Bacterial DNA polymerase III alpha NTPase domain Sdiek1_0763 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Sdiek1_0763 PF14579 Helix-hairpin-helix motif Sdiek1_0763 PF02811 PHP domain Sdiek1_0764 PF00989 PAS fold Sdiek1_0764 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0766 PF04172 LrgB-like family Sdiek1_0767 PF03788 LrgA family Sdiek1_0768 PF02705 K+ potassium transporter Sdiek1_0771 PF01098 Cell cycle protein Sdiek1_0772 PF01479 S4 domain Sdiek1_0772 PF00849 RNA pseudouridylate synthase Sdiek1_0774 PF02390 Putative methyltransferase Sdiek1_0775 PF00005 ABC transporter Sdiek1_0779 PF00696 Amino acid kinase family Sdiek1_0780 PF01192 RNA polymerase Rpb6 Sdiek1_0781 PF13291 ACT domain Sdiek1_0781 PF04607 Region found in RelA / SpoT proteins Sdiek1_0781 PF02824 TGS domain Sdiek1_0782 PF00579 tRNA synthetases class I (W and Y) Sdiek1_0782 PF01479 S4 domain Sdiek1_0783 PF03060 Nitronate monooxygenase Sdiek1_0784 PF01520 N-acetylmuramoyl-L-alanine amidase Sdiek1_0787 PF00152 tRNA synthetases class II (D, K and N) Sdiek1_0787 PF01336 OB-fold nucleic acid binding domain Sdiek1_0787 PF02938 GAD domain Sdiek1_0788 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0790 PF01513 ATP-NAD kinase Sdiek1_0791 PF13476 AAA domain Sdiek1_0792 PF07694 5TMR of 5TMR-LYT Sdiek1_0792 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0793 PF01026 TatD related DNase Sdiek1_0794 PF05257 CHAP domain Sdiek1_0794 PF01476 LysM domain Sdiek1_0795 PF03330 Lytic transglycolase Sdiek1_0795 PF05036 Sporulation related domain Sdiek1_0796 PF00475 Imidazoleglycerol-phosphate dehydratase Sdiek1_0800 PF01926 50S ribosome-binding GTPase Sdiek1_0803 PF00905 Penicillin binding protein transpeptidase domain Sdiek1_0803 PF03717 Penicillin-binding Protein dimerisation domain Sdiek1_0806 PF02130 Uncharacterized protein family UPF0054 Sdiek1_0808 PF01588 Putative tRNA binding domain Sdiek1_0808 PF00133 tRNA synthetases class I (I, L, M and V) Sdiek1_0808 PF09334 tRNA synthetases class I (M) Sdiek1_0810 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Sdiek1_0815 PF00749 tRNA synthetases class I (E and Q), catalytic domain Sdiek1_0816 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Sdiek1_0816 PF00749 tRNA synthetases class I (E and Q), catalytic domain Sdiek1_0819 PF00072 Response regulator receiver domain Sdiek1_0819 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0820 PF00939 Sodium:sulfate symporter transmembrane region Sdiek1_0821 PF00989 PAS fold Sdiek1_0821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0821 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0823 PF02743 Cache domain Sdiek1_0823 PF00672 HAMP domain Sdiek1_0823 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0825 PF03466 LysR substrate binding domain Sdiek1_0825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_0826 PF00890 FAD binding domain Sdiek1_0826 PF02910 Fumarate reductase flavoprotein C-term Sdiek1_0827 PF13085 2Fe-2S iron-sulfur cluster binding domain Sdiek1_0827 PF13183 4Fe-4S dicluster domain Sdiek1_0828 PF02754 Cysteine-rich domain Sdiek1_0830 PF17202 Single cache domain 3 Sdiek1_0830 PF00672 HAMP domain Sdiek1_0830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0833 PF03264 NapC/NirT cytochrome c family, N-terminal region Sdiek1_0834 PF02335 Cytochrome c552 Sdiek1_0835 PF05140 ResB-like family Sdiek1_0835 PF01578 Cytochrome C assembly protein Sdiek1_0839 PF06821 Serine hydrolase Sdiek1_0840 PF01810 LysE type translocator Sdiek1_0841 PF00535 Glycosyl transferase family 2 Sdiek1_0842 PF01636 Phosphotransferase enzyme family Sdiek1_0844 PF09335 SNARE associated Golgi protein Sdiek1_0847 PF09335 SNARE associated Golgi protein Sdiek1_0848 PF13847 Methyltransferase domain Sdiek1_0849 PF00230 Major intrinsic protein Sdiek1_0851 PF00892 EamA-like transporter family Sdiek1_0853 PF01040 UbiA prenyltransferase family Sdiek1_0855 PF00106 short chain dehydrogenase Sdiek1_0858 PF06100 MCRA family Sdiek1_0864 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Sdiek1_0864 PF01411 tRNA synthetases class II (A) Sdiek1_0864 PF02272 DHHA1 domain Sdiek1_0867 PF13359 DDE superfamily endonuclease Sdiek1_0867 PF13613 Helix-turn-helix of DDE superfamily endonuclease Sdiek1_0868 PF13613 Helix-turn-helix of DDE superfamily endonuclease Sdiek1_0868 PF13359 DDE superfamily endonuclease Sdiek1_0869 PF00384 Molybdopterin oxidoreductase Sdiek1_0869 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0869 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0869 PF10518 TAT (twin-arginine translocation) pathway signal sequence Sdiek1_0870 PF12800 4Fe-4S binding domain Sdiek1_0870 PF12838 4Fe-4S dicluster domain Sdiek1_0871 PF00037 4Fe-4S binding domain Sdiek1_0871 PF12801 4Fe-4S binding domain Sdiek1_0872 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Sdiek1_0873 PF00037 4Fe-4S binding domain Sdiek1_0873 PF13187 4Fe-4S dicluster domain Sdiek1_0873 PF12800 4Fe-4S binding domain Sdiek1_0879 PF02001 Protein of unknown function DUF134 Sdiek1_0883 PF01654 Cytochrome bd terminal oxidase subunit I Sdiek1_0884 PF02322 Cytochrome bd terminal oxidase subunit II Sdiek1_0886 PF06071 Protein of unknown function (DUF933) Sdiek1_0886 PF01926 50S ribosome-binding GTPase Sdiek1_0890 PF00384 Molybdopterin oxidoreductase Sdiek1_0890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_0890 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0893 PF00072 Response regulator receiver domain Sdiek1_0893 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0895 PF08447 PAS fold Sdiek1_0895 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0895 PF00989 PAS fold Sdiek1_0896 PF18698 Histidine kinase sensor domain Sdiek1_0896 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0896 PF00672 HAMP domain Sdiek1_0896 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0897 PF01627 Hpt domain Sdiek1_0897 PF00072 Response regulator receiver domain Sdiek1_0897 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_0899 PF00384 Molybdopterin oxidoreductase Sdiek1_0899 PF18364 Molybdopterin oxidoreductase N-terminal domain Sdiek1_0899 PF01568 Molydopterin dinucleotide binding domain Sdiek1_0900 PF00034 Cytochrome c Sdiek1_0901 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Sdiek1_0901 PF00355 Rieske [2Fe-2S] domain Sdiek1_0902 PF00032 Cytochrome b(C-terminal)/b6/petD Sdiek1_0902 PF00033 Cytochrome b/b6/petB Sdiek1_0905 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0905 PF10442 FIST C domain Sdiek1_0905 PF00563 EAL domain Sdiek1_0905 PF08495 FIST N domain Sdiek1_0906 PF02666 Phosphatidylserine decarboxylase Sdiek1_0907 PF00270 DEAD/DEAH box helicase Sdiek1_0907 PF03880 DbpA RNA binding domain Sdiek1_0907 PF00271 Helicase conserved C-terminal domain Sdiek1_0909 PF13309 HTH domain Sdiek1_0909 PF08348 YheO-like PAS domain Sdiek1_0910 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Sdiek1_0910 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Sdiek1_0911 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0911 PF00672 HAMP domain Sdiek1_0911 PF17202 Single cache domain 3 Sdiek1_0912 PF00682 HMGL-like Sdiek1_0912 PF08502 LeuA allosteric (dimerisation) domain Sdiek1_0913 PF01209 ubiE/COQ5 methyltransferase family Sdiek1_0915 PF01810 LysE type translocator Sdiek1_0916 PF11849 Domain of unknown function (DUF3369) Sdiek1_0917 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_0917 PF12729 Four helix bundle sensory module for signal transduction Sdiek1_0917 PF00672 HAMP domain Sdiek1_0921 PF01709 Transcriptional regulator Sdiek1_0923 PF16868 NMT1-like family Sdiek1_0926 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Sdiek1_0926 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Sdiek1_0928 PF00118 TCP-1/cpn60 chaperonin family Sdiek1_0929 PF00166 Chaperonin 10 Kd subunit Sdiek1_0931 PF00072 Response regulator receiver domain Sdiek1_0931 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0970 PF00005 ABC transporter Sdiek1_0974 PF00005 ABC transporter Sdiek1_0975 PF12801 4Fe-4S binding domain Sdiek1_0975 PF13237 4Fe-4S dicluster domain Sdiek1_0978 PF12838 4Fe-4S dicluster domain Sdiek1_0978 PF12800 4Fe-4S binding domain Sdiek1_0981 PF18793 Nitrous oxide reductase propeller repeat 2 Sdiek1_0981 PF18764 Nitrous oxide reductase propeller repeat Sdiek1_0981 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Sdiek1_0982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_0982 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_0982 PF00989 PAS fold Sdiek1_0983 PF00072 Response regulator receiver domain Sdiek1_0983 PF12833 Helix-turn-helix domain Sdiek1_0984 PF00034 Cytochrome c Sdiek1_0985 PF00355 Rieske [2Fe-2S] domain Sdiek1_0985 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Sdiek1_0986 PF00032 Cytochrome b(C-terminal)/b6/petD Sdiek1_0986 PF00033 Cytochrome b/b6/petB Sdiek1_0987 PF02167 Cytochrome C1 family Sdiek1_0990 PF08495 FIST N domain Sdiek1_0990 PF00563 EAL domain Sdiek1_0990 PF10442 FIST C domain Sdiek1_0990 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_0992 PF12729 Four helix bundle sensory module for signal transduction Sdiek1_0992 PF00672 HAMP domain Sdiek1_0992 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1006 PF13247 4Fe-4S dicluster domain Sdiek1_1007 PF01568 Molydopterin dinucleotide binding domain Sdiek1_1007 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_1007 PF00384 Molybdopterin oxidoreductase Sdiek1_1010 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1011 PF00158 Sigma-54 interaction domain Sdiek1_1011 PF02954 Bacterial regulatory protein, Fis family Sdiek1_1011 PF00072 Response regulator receiver domain Sdiek1_1012 PF00005 ABC transporter Sdiek1_1013 PF00005 ABC transporter Sdiek1_1013 PF02687 FtsX-like permease family Sdiek1_1013 PF12704 MacB-like periplasmic core domain Sdiek1_1016 PF03459 TOBE domain Sdiek1_1016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_1019 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_1020 PF00005 ABC transporter Sdiek1_1020 PF08402 TOBE domain Sdiek1_1022 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Sdiek1_1026 PF01568 Molydopterin dinucleotide binding domain Sdiek1_1026 PF00384 Molybdopterin oxidoreductase Sdiek1_1026 PF18465 Rieske 3Fe-4S Sdiek1_1027 PF01568 Molydopterin dinucleotide binding domain Sdiek1_1027 PF00384 Molybdopterin oxidoreductase Sdiek1_1027 PF18465 Rieske 3Fe-4S Sdiek1_1028 PF00355 Rieske [2Fe-2S] domain Sdiek1_1029 PF01451 Low molecular weight phosphotyrosine protein phosphatase Sdiek1_1030 PF01022 Bacterial regulatory protein, arsR family Sdiek1_1031 PF02040 Arsenical pump membrane protein Sdiek1_1032 PF06953 Arsenical resistance operon trans-acting repressor ArsD Sdiek1_1033 PF02374 Anion-transporting ATPase Sdiek1_1034 PF01451 Low molecular weight phosphotyrosine protein phosphatase Sdiek1_1035 PF02683 Cytochrome C biogenesis protein transmembrane region Sdiek1_1035 PF11412 Disulphide bond corrector protein DsbC Sdiek1_1041 PF00873 AcrB/AcrD/AcrF family Sdiek1_1042 PF01545 Cation efflux family Sdiek1_1047 PF02321 Outer membrane efflux protein Sdiek1_1048 PF00873 AcrB/AcrD/AcrF family Sdiek1_1049 PF00529 HlyD membrane-fusion protein of T1SS Sdiek1_1049 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_1050 PF00239 Resolvase, N terminal domain Sdiek1_1050 PF02796 Helix-turn-helix domain of resolvase Sdiek1_1055 PF01695 IstB-like ATP binding protein Sdiek1_1056 PF00665 Integrase core domain Sdiek1_1056 PF02796 Helix-turn-helix domain of resolvase Sdiek1_1057 PF00672 HAMP domain Sdiek1_1057 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1057 PF17202 Single cache domain 3 Sdiek1_1058 PF05981 CreA protein Sdiek1_1059 PF08241 Methyltransferase domain Sdiek1_1061 PF01497 Periplasmic binding protein Sdiek1_1064 PF00037 4Fe-4S binding domain Sdiek1_1064 PF12798 4Fe-4S binding domain Sdiek1_1065 PF00361 Proton-conducting membrane transporter Sdiek1_1066 PF00146 NADH dehydrogenase Sdiek1_1067 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sdiek1_1068 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Sdiek1_1068 PF00361 Proton-conducting membrane transporter Sdiek1_1069 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Sdiek1_1069 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Sdiek1_1069 PF00374 Nickel-dependent hydrogenase Sdiek1_1071 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_1074 PF01226 Formate/nitrite transporter Sdiek1_1077 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1077 PF00072 Response regulator receiver domain Sdiek1_1078 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1078 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1078 PF00989 PAS fold Sdiek1_1080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Sdiek1_1080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Sdiek1_1081 PF13247 4Fe-4S dicluster domain Sdiek1_1081 PF00037 4Fe-4S binding domain Sdiek1_1082 PF03916 Polysulphide reductase, NrfD Sdiek1_1083 PF01578 Cytochrome C assembly protein Sdiek1_1083 PF05140 ResB-like family Sdiek1_1092 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1092 PF00563 EAL domain Sdiek1_1092 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1093 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1093 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1093 PF00563 EAL domain Sdiek1_1096 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1096 PF00072 Response regulator receiver domain Sdiek1_1098 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1098 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1098 PF02702 Osmosensitive K+ channel His kinase sensor domain Sdiek1_1098 PF13492 GAF domain Sdiek1_1098 PF13493 Domain of unknown function (DUF4118) Sdiek1_1099 PF04397 LytTr DNA-binding domain Sdiek1_1099 PF00072 Response regulator receiver domain Sdiek1_1100 PF06580 Histidine kinase Sdiek1_1100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1100 PF07694 5TMR of 5TMR-LYT Sdiek1_1102 PF02321 Outer membrane efflux protein Sdiek1_1103 PF00005 ABC transporter Sdiek1_1103 PF03412 Peptidase C39 family Sdiek1_1103 PF00664 ABC transporter transmembrane region Sdiek1_1104 PF00664 ABC transporter transmembrane region Sdiek1_1104 PF00005 ABC transporter Sdiek1_1104 PF03412 Peptidase C39 family Sdiek1_1105 PF13533 Biotin-lipoyl like Sdiek1_1106 PF00072 Response regulator receiver domain Sdiek1_1106 PF00196 Bacterial regulatory proteins, luxR family Sdiek1_1112 PF04174 A circularly permuted ATPgrasp Sdiek1_1113 PF01841 Transglutaminase-like superfamily Sdiek1_1113 PF08379 Bacterial transglutaminase-like N-terminal region Sdiek1_1119 PF14403 Circularly permuted ATP-grasp type 2 Sdiek1_1121 PF01814 Hemerythrin HHE cation binding domain Sdiek1_1122 PF06738 Putative threonine/serine exporter Sdiek1_1123 PF12821 Threonine/Serine exporter, ThrE Sdiek1_1123 PF06738 Putative threonine/serine exporter Sdiek1_1124 PF00403 Heavy-metal-associated domain Sdiek1_1125 PF01022 Bacterial regulatory protein, arsR family Sdiek1_1127 PF00464 Serine hydroxymethyltransferase Sdiek1_1128 PF12833 Helix-turn-helix domain Sdiek1_1128 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Sdiek1_1128 PF02805 Metal binding domain of Ada Sdiek1_1128 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Sdiek1_1129 PF02743 Cache domain Sdiek1_1129 PF00672 HAMP domain Sdiek1_1129 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1130 PF02581 Thiamine monophosphate synthase Sdiek1_1131 PF02581 Thiamine monophosphate synthase Sdiek1_1134 PF03006 Haemolysin-III related Sdiek1_1135 PF01810 LysE type translocator Sdiek1_1137 PF00892 EamA-like transporter family Sdiek1_1160 PF11490 DNA polymerase III polC-type N-terminus II Sdiek1_1160 PF07733 Bacterial DNA polymerase III alpha NTPase domain Sdiek1_1160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Sdiek1_1160 PF14579 Helix-hairpin-helix motif Sdiek1_1160 PF02811 PHP domain Sdiek1_1160 PF00929 Exonuclease Sdiek1_1161 PF01758 Sodium Bile acid symporter family Sdiek1_1162 PF08267 Cobalamin-independent synthase, N-terminal domain Sdiek1_1162 PF01717 Cobalamin-independent synthase, Catalytic domain Sdiek1_1164 PF01435 Peptidase family M48 Sdiek1_1168 PF01739 CheR methyltransferase, SAM binding domain Sdiek1_1169 PF00072 Response regulator receiver domain Sdiek1_1169 PF01339 CheB methylesterase Sdiek1_1170 PF00883 Cytosol aminopeptidase family, catalytic domain Sdiek1_1170 PF02789 Cytosol aminopeptidase family, N-terminal domain Sdiek1_1172 PF00291 Pyridoxal-phosphate dependent enzyme Sdiek1_1173 PF00156 Phosphoribosyl transferase domain Sdiek1_1175 PF02502 Ribose/Galactose Isomerase Sdiek1_1176 PF02163 Peptidase family M50 Sdiek1_1177 PF10502 Signal peptidase, peptidase S26 Sdiek1_1178 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sdiek1_1178 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Sdiek1_1180 PF00202 Aminotransferase class-III Sdiek1_1183 PF04055 Radical SAM superfamily Sdiek1_1184 PF05193 Peptidase M16 inactive domain Sdiek1_1185 PF00271 Helicase conserved C-terminal domain Sdiek1_1185 PF04851 Type III restriction enzyme, res subunit Sdiek1_1186 PF04851 Type III restriction enzyme, res subunit Sdiek1_1186 PF00271 Helicase conserved C-terminal domain Sdiek1_1194 PF02623 FliW protein Sdiek1_1195 PF13525 Outer membrane lipoprotein Sdiek1_1197 PF00004 ATPase family associated with various cellular activities (AAA) Sdiek1_1197 PF02190 ATP-dependent protease La (LON) substrate-binding domain Sdiek1_1197 PF05362 Lon protease (S16) C-terminal proteolytic domain Sdiek1_1198 PF01084 Ribosomal protein S18 Sdiek1_1199 PF00436 Single-strand binding protein family Sdiek1_1200 PF01250 Ribosomal protein S6 Sdiek1_1201 PF06144 DNA polymerase III, delta subunit Sdiek1_1202 PF00773 RNB domain Sdiek1_1204 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sdiek1_1204 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Sdiek1_1205 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Sdiek1_1206 PF03776 Septum formation topological specificity factor MinE Sdiek1_1207 PF04748 Divergent polysaccharide deacetylase Sdiek1_1209 PF01925 Sulfite exporter TauE/SafE Sdiek1_1210 PF04073 Aminoacyl-tRNA editing domain Sdiek1_1212 PF03315 Serine dehydratase beta chain Sdiek1_1212 PF03313 Serine dehydratase alpha chain Sdiek1_1213 PF03652 Holliday junction resolvase Sdiek1_1214 PF03458 UPF0126 domain Sdiek1_1215 PF00202 Aminotransferase class-III Sdiek1_1217 PF05690 Thiazole biosynthesis protein ThiG Sdiek1_1217 PF02597 ThiS family Sdiek1_1218 PF01648 4'-phosphopantetheinyl transferase superfamily Sdiek1_1219 PF03748 Flagellar basal body-associated protein FliL Sdiek1_1220 PF18073 Rubredoxin metal binding domain Sdiek1_1221 PF00448 SRP54-type protein, GTPase domain Sdiek1_1222 PF00578 AhpC/TSA family Sdiek1_1223 PF01966 HD domain Sdiek1_1223 PF00013 KH domain Sdiek1_1223 PF12072 Domain of unknown function (DUF3552) Sdiek1_1224 PF00664 ABC transporter transmembrane region Sdiek1_1224 PF00005 ABC transporter Sdiek1_1229 PF01758 Sodium Bile acid symporter family Sdiek1_1230 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Sdiek1_1233 PF00072 Response regulator receiver domain Sdiek1_1233 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1234 PF01966 HD domain Sdiek1_1234 PF00072 Response regulator receiver domain Sdiek1_1235 PF08448 PAS fold Sdiek1_1235 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1235 PF00563 EAL domain Sdiek1_1236 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1238 PF04073 Aminoacyl-tRNA editing domain Sdiek1_1246 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Sdiek1_1246 PF00925 GTP cyclohydrolase II Sdiek1_1247 PF02254 TrkA-N domain Sdiek1_1247 PF00999 Sodium/hydrogen exchanger family Sdiek1_1249 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1249 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1249 PF00672 HAMP domain Sdiek1_1250 PF00149 Calcineurin-like phosphoesterase Sdiek1_1251 PF04264 YceI-like domain Sdiek1_1255 PF00005 ABC transporter Sdiek1_1262 PF00465 Iron-containing alcohol dehydrogenase Sdiek1_1263 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1263 PF00563 EAL domain Sdiek1_1263 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1270 PF01327 Polypeptide deformylase Sdiek1_1271 PF03061 Thioesterase superfamily Sdiek1_1274 PF03167 Uracil DNA glycosylase superfamily Sdiek1_1277 PF00682 HMGL-like Sdiek1_1278 PF02579 Dinitrogenase iron-molybdenum cofactor Sdiek1_1278 PF04055 Radical SAM superfamily Sdiek1_1279 PF00072 Response regulator receiver domain Sdiek1_1280 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1280 PF00072 Response regulator receiver domain Sdiek1_1281 PF08495 FIST N domain Sdiek1_1281 PF00563 EAL domain Sdiek1_1281 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1281 PF10442 FIST C domain Sdiek1_1282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1282 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1283 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1283 PF00072 Response regulator receiver domain Sdiek1_1284 PF00753 Metallo-beta-lactamase superfamily Sdiek1_1284 PF00258 Flavodoxin Sdiek1_1285 PF02579 Dinitrogenase iron-molybdenum cofactor Sdiek1_1289 PF00890 FAD binding domain Sdiek1_1289 PF04205 FMN-binding domain Sdiek1_1294 PF02574 Homocysteine S-methyltransferase Sdiek1_1296 PF12794 Mechanosensitive ion channel inner membrane domain 1 Sdiek1_1296 PF12795 Mechanosensitive ion channel porin domain Sdiek1_1296 PF00924 Mechanosensitive ion channel Sdiek1_1297 PF02579 Dinitrogenase iron-molybdenum cofactor Sdiek1_1298 PF03270 Protein of unknown function, DUF269 Sdiek1_1299 PF00258 Flavodoxin Sdiek1_1301 PF04319 NifZ domain Sdiek1_1304 PF00309 Sigma-54 factor, Activator interacting domain (AID) Sdiek1_1304 PF04963 Sigma-54 factor, core binding domain Sdiek1_1304 PF04552 Sigma-54, DNA binding domain Sdiek1_1307 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Sdiek1_1310 PF00905 Penicillin binding protein transpeptidase domain Sdiek1_1311 PF00360 Phytochrome region Sdiek1_1311 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1311 PF01590 GAF domain Sdiek1_1311 PF00563 EAL domain Sdiek1_1317 PF01863 Protein of unknown function DUF45 Sdiek1_1321 PF02567 Phenazine biosynthesis-like protein Sdiek1_1324 PF12849 PBP superfamily domain Sdiek1_1326 PF00561 alpha/beta hydrolase fold Sdiek1_1329 PF13536 Putative multidrug resistance efflux transporter Sdiek1_1331 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1331 PF17158 Membrane-associated sensor, integral membrane domain Sdiek1_1332 PF01063 Amino-transferase class IV Sdiek1_1335 PF00561 alpha/beta hydrolase fold Sdiek1_1338 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1338 PF00672 HAMP domain Sdiek1_1341 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Sdiek1_1346 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1346 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1347 PF00072 Response regulator receiver domain Sdiek1_1347 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1349 PF00583 Acetyltransferase (GNAT) family Sdiek1_1349 PF00795 Carbon-nitrogen hydrolase Sdiek1_1357 PF00072 Response regulator receiver domain Sdiek1_1359 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1359 PF13426 PAS domain Sdiek1_1359 PF00672 HAMP domain Sdiek1_1363 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_1363 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Sdiek1_1364 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sdiek1_1365 PF13247 4Fe-4S dicluster domain Sdiek1_1366 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Sdiek1_1366 PF00374 Nickel-dependent hydrogenase Sdiek1_1367 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Sdiek1_1369 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_1372 PF05977 Transmembrane secretion effector Sdiek1_1373 PF00857 Isochorismatase family Sdiek1_1375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Sdiek1_1377 PF00155 Aminotransferase class I and II Sdiek1_1378 PF02492 CobW/HypB/UreG, nucleotide-binding domain Sdiek1_1378 PF07683 Cobalamin synthesis protein cobW C-terminal domain Sdiek1_1379 PF04328 Selenoprotein, putative Sdiek1_1380 PF02554 Carbon starvation protein CstA Sdiek1_1380 PF13722 5TM C-terminal transporter carbon starvation CstA Sdiek1_1383 PF00890 FAD binding domain Sdiek1_1383 PF02910 Fumarate reductase flavoprotein C-term Sdiek1_1384 PF06988 NifT/FixU protein Sdiek1_1385 PF13185 GAF domain Sdiek1_1385 PF02954 Bacterial regulatory protein, Fis family Sdiek1_1385 PF00158 Sigma-54 interaction domain Sdiek1_1390 PF00586 AIR synthase related protein, N-terminal domain Sdiek1_1390 PF02769 AIR synthase related protein, C-terminal domain Sdiek1_1391 PF01142 tRNA pseudouridine synthase D (TruD) Sdiek1_1392 PF00999 Sodium/hydrogen exchanger family Sdiek1_1392 PF02080 TrkA-C domain Sdiek1_1392 PF02254 TrkA-N domain Sdiek1_1393 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1393 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1393 PF00563 EAL domain Sdiek1_1395 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1396 PF08543 Phosphomethylpyrimidine kinase Sdiek1_1396 PF02581 Thiamine monophosphate synthase Sdiek1_1398 PF02110 Hydroxyethylthiazole kinase family Sdiek1_1400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1400 PF00672 HAMP domain Sdiek1_1400 PF02743 Cache domain Sdiek1_1401 PF00753 Metallo-beta-lactamase superfamily Sdiek1_1401 PF12706 Beta-lactamase superfamily domain Sdiek1_1403 PF16326 ABC transporter C-terminal domain Sdiek1_1403 PF12848 ABC transporter Sdiek1_1403 PF00005 ABC transporter Sdiek1_1404 PF13677 Membrane MotB of proton-channel complex MotA/MotB Sdiek1_1404 PF00691 OmpA family Sdiek1_1405 PF01618 MotA/TolQ/ExbB proton channel family Sdiek1_1408 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_1409 PF00873 AcrB/AcrD/AcrF family Sdiek1_1410 PF02321 Outer membrane efflux protein Sdiek1_1414 PF00881 Nitroreductase family Sdiek1_1422 PF00501 AMP-binding enzyme Sdiek1_1422 PF14535 AMP-binding enzyme C-terminal domain Sdiek1_1426 PF00474 Sodium:solute symporter family Sdiek1_1428 PF02561 Flagellar protein FliS Sdiek1_1429 PF07196 Flagellin hook IN motif Sdiek1_1429 PF07195 Flagellar hook-associated protein 2 C-terminus Sdiek1_1429 PF02465 Flagellar hook-associated protein 2 N-terminus Sdiek1_1434 PF02119 Flagellar P-ring protein Sdiek1_1438 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Sdiek1_1438 PF00460 Flagella basal body rod protein Sdiek1_1439 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_1439 PF12911 N-terminal TM domain of oligopeptide transport permease C Sdiek1_1441 PF01740 STAS domain Sdiek1_1441 PF00916 Sulfate permease family Sdiek1_1442 PF01361 Tautomerase enzyme Sdiek1_1443 PF00119 ATP synthase A chain Sdiek1_1445 PF17792 ThiD2 family Sdiek1_1445 PF02581 Thiamine monophosphate synthase Sdiek1_1446 PF02934 GatB/GatE catalytic domain Sdiek1_1446 PF02637 GatB domain Sdiek1_1447 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sdiek1_1447 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Sdiek1_1448 PF00933 Glycosyl hydrolase family 3 N terminal domain Sdiek1_1450 PF01416 tRNA pseudouridine synthase Sdiek1_1452 PF06750 Bacterial Peptidase A24 N-terminal domain Sdiek1_1452 PF01478 Type IV leader peptidase family Sdiek1_1454 PF04127 DNA / pantothenate metabolism flavoprotein Sdiek1_1454 PF02441 Flavoprotein Sdiek1_1455 PF12804 MobA-like NTP transferase domain Sdiek1_1455 PF00132 Bacterial transferase hexapeptide (six repeats) Sdiek1_1456 PF00813 FliP family Sdiek1_1457 PF01263 Aldose 1-epimerase Sdiek1_1458 PF02525 Flavodoxin-like fold Sdiek1_1461 PF13194 Domain of unknown function (DUF4010) Sdiek1_1462 PF08497 Radical SAM N-terminal Sdiek1_1462 PF04055 Radical SAM superfamily Sdiek1_1463 PF00342 Phosphoglucose isomerase Sdiek1_1466 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_1466 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Sdiek1_1467 PF00374 Nickel-dependent hydrogenase Sdiek1_1468 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Sdiek1_1468 PF10518 TAT (twin-arginine translocation) pathway signal sequence Sdiek1_1468 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_1469 PF00374 Nickel-dependent hydrogenase Sdiek1_1470 PF01292 Prokaryotic cytochrome b561 Sdiek1_1471 PF01750 Hydrogenase maturation protease Sdiek1_1473 PF00708 Acylphosphatase Sdiek1_1473 PF17788 HypF Kae1-like domain Sdiek1_1473 PF01300 Telomere recombination Sdiek1_1473 PF07503 HypF finger Sdiek1_1474 PF08753 NikR C terminal nickel binding domain Sdiek1_1474 PF01402 Ribbon-helix-helix protein, copG family Sdiek1_1476 PF02492 CobW/HypB/UreG, nucleotide-binding domain Sdiek1_1477 PF01455 HupF/HypC family Sdiek1_1478 PF01924 Hydrogenase formation hypA family Sdiek1_1479 PF02769 AIR synthase related protein, C-terminal domain Sdiek1_1479 PF00586 AIR synthase related protein, N-terminal domain Sdiek1_1480 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sdiek1_1481 PF00583 Acetyltransferase (GNAT) family Sdiek1_1482 PF13419 Haloacid dehalogenase-like hydrolase Sdiek1_1486 PF03971 Monomeric isocitrate dehydrogenase Sdiek1_1487 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Sdiek1_1487 PF00056 lactate/malate dehydrogenase, NAD binding domain Sdiek1_1488 PF08442 ATP-grasp domain Sdiek1_1488 PF00549 CoA-ligase Sdiek1_1489 PF00549 CoA-ligase Sdiek1_1489 PF02629 CoA binding domain Sdiek1_1491 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Sdiek1_1491 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Sdiek1_1491 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Sdiek1_1492 PF00205 Thiamine pyrophosphate enzyme, central domain Sdiek1_1492 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Sdiek1_1492 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Sdiek1_1496 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1496 PF07568 Histidine kinase Sdiek1_1496 PF12282 Signal transduction histidine kinase Sdiek1_1497 PF00072 Response regulator receiver domain Sdiek1_1501 PF10415 Fumarase C C-terminus Sdiek1_1501 PF00206 Lyase Sdiek1_1506 PF00005 ABC transporter Sdiek1_1509 PF01914 MarC family integral membrane protein Sdiek1_1512 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1512 PF00072 Response regulator receiver domain Sdiek1_1513 PF01168 Alanine racemase, N-terminal domain Sdiek1_1514 PF17820 PDZ domain Sdiek1_1514 PF02163 Peptidase family M50 Sdiek1_1515 PF01066 CDP-alcohol phosphatidyltransferase Sdiek1_1517 PF00701 Dihydrodipicolinate synthetase family Sdiek1_1519 PF01180 Dihydroorotate dehydrogenase Sdiek1_1520 PF00005 ABC transporter Sdiek1_1520 PF00664 ABC transporter transmembrane region Sdiek1_1521 PF01406 tRNA synthetases class I (C) catalytic domain Sdiek1_1522 PF03023 Lipid II flippase MurJ Sdiek1_1524 PF07499 RuvA, C-terminal domain Sdiek1_1524 PF01330 RuvA N terminal domain Sdiek1_1525 PF07478 D-ala D-ala ligase C-terminus Sdiek1_1525 PF01820 D-ala D-ala ligase N-terminus Sdiek1_1528 PF00708 Acylphosphatase Sdiek1_1529 PF02875 Mur ligase family, glutamate ligase domain Sdiek1_1529 PF01225 Mur ligase family, catalytic domain Sdiek1_1529 PF08245 Mur ligase middle domain Sdiek1_1530 PF07085 DRTGG domain Sdiek1_1530 PF01515 Phosphate acetyl/butaryl transferase Sdiek1_1531 PF00871 Acetokinase family Sdiek1_1532 PF09424 Yqey-like protein Sdiek1_1533 PF02107 Flagellar L-ring protein Sdiek1_1535 PF00482 Type II secretion system (T2SS), protein F Sdiek1_1536 PF00437 Type II/IV secretion system protein Sdiek1_1546 PF01926 50S ribosome-binding GTPase Sdiek1_1546 PF07650 KH domain Sdiek1_1547 PF10431 C-terminal, D2-small domain, of ClpB protein Sdiek1_1547 PF07724 AAA domain (Cdc48 subfamily) Sdiek1_1548 PF00227 Proteasome subunit Sdiek1_1549 PF03948 Ribosomal protein L9, C-terminal domain Sdiek1_1549 PF01281 Ribosomal protein L9, N-terminal domain Sdiek1_1551 PF00764 Arginosuccinate synthase Sdiek1_1552 PF01479 S4 domain Sdiek1_1553 PF00591 Glycosyl transferase family, a/b domain Sdiek1_1553 PF02885 Glycosyl transferase family, helical bundle domain Sdiek1_1554 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sdiek1_1555 PF00005 ABC transporter Sdiek1_1555 PF12399 Branched-chain amino acid ATP-binding cassette transporter Sdiek1_1556 PF04552 Sigma-54, DNA binding domain Sdiek1_1556 PF04963 Sigma-54 factor, core binding domain Sdiek1_1556 PF00309 Sigma-54 factor, Activator interacting domain (AID) Sdiek1_1558 PF04377 Arginine-tRNA-protein transferase, C terminus Sdiek1_1558 PF04376 Arginine-tRNA-protein transferase, N terminus Sdiek1_1561 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system Sdiek1_1564 PF13086 AAA domain Sdiek1_1564 PF13087 AAA domain Sdiek1_1564 PF13195 Protein of unknown function (DUF4011) Sdiek1_1565 PF13361 UvrD-like helicase C-terminal domain Sdiek1_1565 PF00580 UvrD/REP helicase N-terminal domain Sdiek1_1571 PF01966 HD domain Sdiek1_1574 PF00672 HAMP domain Sdiek1_1574 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1574 PF02743 Cache domain Sdiek1_1575 PF00072 Response regulator receiver domain Sdiek1_1579 PF00072 Response regulator receiver domain Sdiek1_1582 PF14537 Cytochrome c3 Sdiek1_1582 PF00890 FAD binding domain Sdiek1_1583 PF00925 GTP cyclohydrolase II Sdiek1_1584 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Sdiek1_1584 PF00925 GTP cyclohydrolase II Sdiek1_1585 PF00885 6,7-dimethyl-8-ribityllumazine synthase Sdiek1_1590 PF00989 PAS fold Sdiek1_1590 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1591 PF00072 Response regulator receiver domain Sdiek1_1591 PF01966 HD domain Sdiek1_1594 PF00072 Response regulator receiver domain Sdiek1_1594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1594 PF13426 PAS domain Sdiek1_1595 PF00072 Response regulator receiver domain Sdiek1_1595 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1597 PF12800 4Fe-4S binding domain Sdiek1_1597 PF12838 4Fe-4S dicluster domain Sdiek1_1600 PF03186 CobD/Cbib protein Sdiek1_1601 PF00155 Aminotransferase class I and II Sdiek1_1602 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Sdiek1_1603 PF07685 CobB/CobQ-like glutamine amidotransferase domain Sdiek1_1606 PF02654 Cobalamin-5-phosphate synthase Sdiek1_1607 PF00300 Histidine phosphatase superfamily (branch 1) Sdiek1_1608 PF06180 Cobalt chelatase (CbiK) Sdiek1_1610 PF00005 ABC transporter Sdiek1_1612 PF02570 Precorrin-8X methylmutase Sdiek1_1613 PF01888 CbiD Sdiek1_1615 PF05175 Methyltransferase small domain Sdiek1_1616 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Sdiek1_1617 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Sdiek1_1618 PF11760 Cobalamin synthesis G N-terminal Sdiek1_1618 PF11761 Cobalamin biosynthesis central region Sdiek1_1618 PF01890 Cobalamin synthesis G C-terminus Sdiek1_1619 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Sdiek1_1619 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Sdiek1_1621 PF02571 Precorrin-6x reductase CbiJ/CobK Sdiek1_1622 PF00005 ABC transporter Sdiek1_1622 PF00664 ABC transporter transmembrane region Sdiek1_1623 PF07685 CobB/CobQ-like glutamine amidotransferase domain Sdiek1_1623 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Sdiek1_1625 PF10414 Sirohaem synthase dimerisation region Sdiek1_1625 PF14824 Sirohaem biosynthesis protein central Sdiek1_1625 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Sdiek1_1626 PF00440 Bacterial regulatory proteins, tetR family Sdiek1_1626 PF18665 Tetracyclin repressor-like, C-terminal domain Sdiek1_1647 PF00589 Phage integrase family Sdiek1_1647 PF13356 Arm DNA-binding domain Sdiek1_1649 PF00216 Bacterial DNA-binding protein Sdiek1_1652 PF17854 FtsK alpha domain Sdiek1_1652 PF09397 Ftsk gamma domain Sdiek1_1652 PF01580 FtsK/SpoIIIE family Sdiek1_1653 PF00330 Aconitase family (aconitate hydratase) Sdiek1_1653 PF11791 Aconitate B N-terminal domain Sdiek1_1653 PF06434 Aconitate hydratase 2 N-terminus Sdiek1_1654 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Sdiek1_1655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Sdiek1_1655 PF02896 PEP-utilising enzyme, TIM barrel domain Sdiek1_1655 PF00391 PEP-utilising enzyme, mobile domain Sdiek1_1656 PF06629 MltA-interacting protein MipA Sdiek1_1658 PF07690 Major Facilitator Superfamily Sdiek1_1662 PF05958 tRNA (Uracil-5-)-methyltransferase Sdiek1_1663 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1663 PF02743 Cache domain Sdiek1_1663 PF00672 HAMP domain Sdiek1_1664 PF13380 CoA binding domain Sdiek1_1665 PF00291 Pyridoxal-phosphate dependent enzyme Sdiek1_1665 PF13291 ACT domain Sdiek1_1667 PF00005 ABC transporter Sdiek1_1668 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_1669 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_1670 PF00497 Bacterial extracellular solute-binding proteins, family 3 Sdiek1_1671 PF01474 Class-II DAHP synthetase family Sdiek1_1673 PF09335 SNARE associated Golgi protein Sdiek1_1674 PF02687 FtsX-like permease family Sdiek1_1674 PF12704 MacB-like periplasmic core domain Sdiek1_1674 PF00005 ABC transporter Sdiek1_1675 PF00171 Aldehyde dehydrogenase family Sdiek1_1676 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_1679 PF08468 Methyltransferase small domain N-terminal Sdiek1_1679 PF05175 Methyltransferase small domain Sdiek1_1680 PF03692 Putative zinc- or iron-chelating domain Sdiek1_1682 PF00218 Indole-3-glycerol phosphate synthase Sdiek1_1685 PF00005 ABC transporter Sdiek1_1688 PF01891 Cobalt uptake substrate-specific transmembrane region Sdiek1_1688 PF13190 PDGLE domain Sdiek1_1689 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Sdiek1_1690 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Sdiek1_1693 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_1696 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Sdiek1_1696 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Sdiek1_1696 PF00205 Thiamine pyrophosphate enzyme, central domain Sdiek1_1697 PF10369 Small subunit of acetolactate synthase Sdiek1_1698 PF00132 Bacterial transferase hexapeptide (six repeats) Sdiek1_1698 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Sdiek1_1700 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Sdiek1_1700 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_1701 PF00155 Aminotransferase class I and II Sdiek1_1702 PF00148 Nitrogenase component 1 type Oxidoreductase Sdiek1_1703 PF02954 Bacterial regulatory protein, Fis family Sdiek1_1703 PF01590 GAF domain Sdiek1_1703 PF00158 Sigma-54 interaction domain Sdiek1_1705 PF00148 Nitrogenase component 1 type Oxidoreductase Sdiek1_1706 PF03139 Vanadium/alternative nitrogenase delta subunit Sdiek1_1707 PF00148 Nitrogenase component 1 type Oxidoreductase Sdiek1_1708 PF00132 Bacterial transferase hexapeptide (six repeats) Sdiek1_1709 PF17944 Arginine decarboxylase C-terminal helical extension Sdiek1_1709 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Sdiek1_1709 PF17810 Arginine decarboxylase helical bundle domain Sdiek1_1710 PF03129 Anticodon binding domain Sdiek1_1710 PF13393 Histidyl-tRNA synthetase Sdiek1_1711 PF02223 Thymidylate kinase Sdiek1_1712 PF01467 Cytidylyltransferase-like Sdiek1_1713 PF02441 Flavoprotein Sdiek1_1715 PF00672 HAMP domain Sdiek1_1715 PF02743 Cache domain Sdiek1_1715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1717 PF03453 MoeA N-terminal region (domain I and II) Sdiek1_1717 PF03454 MoeA C-terminal region (domain IV) Sdiek1_1717 PF00994 Probable molybdopterin binding domain Sdiek1_1718 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Sdiek1_1721 PF00731 AIR carboxylase Sdiek1_1722 PF02540 NAD synthase Sdiek1_1723 PF01969 Protein of unknown function DUF111 Sdiek1_1724 PF09861 Lactate racemase N-terminal domain Sdiek1_1725 PF05683 Fumarase C-terminus Sdiek1_1725 PF05681 Fumarate hydratase (Fumerase) Sdiek1_1726 PF05683 Fumarase C-terminus Sdiek1_1726 PF05681 Fumarate hydratase (Fumerase) Sdiek1_1727 PF00939 Sodium:sulfate symporter transmembrane region Sdiek1_1730 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1730 PF00072 Response regulator receiver domain Sdiek1_1733 PF00300 Histidine phosphatase superfamily (branch 1) Sdiek1_1735 PF18644 Phage integrase SAM-like domain Sdiek1_1735 PF00589 Phage integrase family Sdiek1_1736 PF01702 Queuine tRNA-ribosyltransferase Sdiek1_1738 PF01761 3-dehydroquinate synthase Sdiek1_1740 PF00919 Uncharacterized protein family UPF0004 Sdiek1_1740 PF04055 Radical SAM superfamily Sdiek1_1741 PF17862 AAA+ lid domain Sdiek1_1741 PF00004 ATPase family associated with various cellular activities (AAA) Sdiek1_1741 PF06480 FtsH Extracellular Sdiek1_1741 PF01434 Peptidase family M41 Sdiek1_1745 PF00296 Luciferase-like monooxygenase Sdiek1_1746 PF00849 RNA pseudouridylate synthase Sdiek1_1746 PF01479 S4 domain Sdiek1_1748 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Sdiek1_1748 PF00205 Thiamine pyrophosphate enzyme, central domain Sdiek1_1748 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Sdiek1_1752 PF12833 Helix-turn-helix domain Sdiek1_1752 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Sdiek1_1754 PF00440 Bacterial regulatory proteins, tetR family Sdiek1_1754 PF08359 YsiA-like protein, C-terminal region Sdiek1_1757 PF00873 AcrB/AcrD/AcrF family Sdiek1_1762 PF17202 Single cache domain 3 Sdiek1_1762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1762 PF00672 HAMP domain Sdiek1_1763 PF02915 Rubrerythrin Sdiek1_1765 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Sdiek1_1766 PF03900 Porphobilinogen deaminase, C-terminal domain Sdiek1_1766 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Sdiek1_1768 PF04186 FxsA cytoplasmic membrane protein Sdiek1_1769 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Sdiek1_1769 PF04073 Aminoacyl-tRNA editing domain Sdiek1_1769 PF03129 Anticodon binding domain Sdiek1_1770 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Sdiek1_1770 PF01488 Shikimate / quinate 5-dehydrogenase Sdiek1_1770 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Sdiek1_1771 PF00348 Polyprenyl synthetase Sdiek1_1774 PF01053 Cys/Met metabolism PLP-dependent enzyme Sdiek1_1775 PF02082 Transcriptional regulator Sdiek1_1776 PF00291 Pyridoxal-phosphate dependent enzyme Sdiek1_1777 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1778 PF08264 Anticodon-binding domain of tRNA Sdiek1_1778 PF10458 Valyl tRNA synthetase tRNA binding arm Sdiek1_1778 PF00133 tRNA synthetases class I (I, L, M and V) Sdiek1_1779 PF00994 Probable molybdopterin binding domain Sdiek1_1780 PF08546 Ketopantoate reductase PanE/ApbA C terminal Sdiek1_1780 PF02558 Ketopantoate reductase PanE/ApbA Sdiek1_1781 PF00815 Histidinol dehydrogenase Sdiek1_1783 PF01116 Fructose-bisphosphate aldolase class-II Sdiek1_1785 PF00633 Helix-hairpin-helix motif Sdiek1_1785 PF10576 Iron-sulfur binding domain of endonuclease III Sdiek1_1785 PF00730 HhH-GPD superfamily base excision DNA repair protein Sdiek1_1787 PF07687 Peptidase dimerisation domain Sdiek1_1787 PF01546 Peptidase family M20/M25/M40 Sdiek1_1789 PF08003 Protein of unknown function (DUF1698) Sdiek1_1791 PF00753 Metallo-beta-lactamase superfamily Sdiek1_1792 PF02540 NAD synthase Sdiek1_1793 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Sdiek1_1794 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Sdiek1_1795 PF00696 Amino acid kinase family Sdiek1_1796 PF00291 Pyridoxal-phosphate dependent enzyme Sdiek1_1797 PF02348 Cytidylyltransferase Sdiek1_1799 PF02683 Cytochrome C biogenesis protein transmembrane region Sdiek1_1799 PF11412 Disulphide bond corrector protein DsbC Sdiek1_1800 PF03976 Polyphosphate kinase 2 (PPK2) Sdiek1_1801 PF01966 HD domain Sdiek1_1802 PF00012 Hsp70 protein Sdiek1_1803 PF01025 GrpE Sdiek1_1807 PF00312 Ribosomal protein S15 Sdiek1_1808 PF02082 Transcriptional regulator Sdiek1_1809 PF00771 FHIPEP family Sdiek1_1812 PF13649 Methyltransferase domain Sdiek1_1813 PF13185 GAF domain Sdiek1_1813 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1814 PF01687 Riboflavin kinase Sdiek1_1814 PF06574 FAD synthetase Sdiek1_1815 PF00163 Ribosomal protein S4/S9 N-terminal domain Sdiek1_1815 PF01479 S4 domain Sdiek1_1816 PF01653 NAD-dependent DNA ligase adenylation domain Sdiek1_1816 PF03120 NAD-dependent DNA ligase OB-fold domain Sdiek1_1816 PF12826 Helix-hairpin-helix motif Sdiek1_1816 PF00533 BRCA1 C Terminus (BRCT) domain Sdiek1_1817 PF01925 Sulfite exporter TauE/SafE Sdiek1_1819 PF00809 Pterin binding enzyme Sdiek1_1820 PF12169 DNA polymerase III subunits gamma and tau domain III Sdiek1_1822 PF01842 ACT domain Sdiek1_1822 PF13840 ACT domain Sdiek1_1822 PF00696 Amino acid kinase family Sdiek1_1823 PF00293 NUDIX domain Sdiek1_1824 PF06969 HemN C-terminal domain Sdiek1_1824 PF04055 Radical SAM superfamily Sdiek1_1825 PF00999 Sodium/hydrogen exchanger family Sdiek1_1825 PF02254 TrkA-N domain Sdiek1_1826 PF13411 MerR HTH family regulatory protein Sdiek1_1827 PF01556 DnaJ C terminal domain Sdiek1_1827 PF00226 DnaJ domain Sdiek1_1829 PF17820 PDZ domain Sdiek1_1829 PF13180 PDZ domain Sdiek1_1830 PF00072 Response regulator receiver domain Sdiek1_1830 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1831 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1831 PF00672 HAMP domain Sdiek1_1834 PF02810 SEC-C motif Sdiek1_1834 PF01043 SecA preprotein cross-linking domain Sdiek1_1834 PF07516 SecA Wing and Scaffold domain Sdiek1_1834 PF00271 Helicase conserved C-terminal domain Sdiek1_1834 PF07517 SecA DEAD-like domain Sdiek1_1835 PF03548 Outer membrane lipoprotein carrier protein LolA Sdiek1_1836 PF00563 EAL domain Sdiek1_1836 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1836 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1837 PF06965 Na+/H+ antiporter 1 Sdiek1_1838 PF01926 50S ribosome-binding GTPase Sdiek1_1838 PF10396 GTP-binding protein TrmE N-terminus Sdiek1_1838 PF12631 MnmE helical domain Sdiek1_1840 PF14849 YidC periplasmic domain Sdiek1_1840 PF02096 60Kd inner membrane protein Sdiek1_1841 PF01809 Putative membrane protein insertion efficiency factor Sdiek1_1842 PF00468 Ribosomal protein L34 Sdiek1_1843 PF13193 AMP-binding enzyme C-terminal domain Sdiek1_1843 PF00668 Condensation domain Sdiek1_1843 PF00501 AMP-binding enzyme Sdiek1_1843 PF00550 Phosphopantetheine attachment site Sdiek1_1844 PF13941 MutL protein Sdiek1_1845 PF06368 Methylaspartate mutase E chain (MutE) Sdiek1_1846 PF02310 B12 binding domain Sdiek1_1848 PF03737 Aldolase/RraA Sdiek1_1851 PF17871 AAA lid domain Sdiek1_1851 PF10431 C-terminal, D2-small domain, of ClpB protein Sdiek1_1851 PF02861 Clp amino terminal domain, pathogenicity island component Sdiek1_1851 PF00004 ATPase family associated with various cellular activities (AAA) Sdiek1_1851 PF07724 AAA domain (Cdc48 subfamily) Sdiek1_1852 PF03572 Peptidase family S41 Sdiek1_1852 PF13180 PDZ domain Sdiek1_1853 PF01259 SAICAR synthetase Sdiek1_1854 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Sdiek1_1857 PF01553 Acyltransferase Sdiek1_1858 PF00183 Hsp90 protein Sdiek1_1860 PF03190 Protein of unknown function, DUF255 Sdiek1_1861 PF00581 Rhodanese-like domain Sdiek1_1862 PF13361 UvrD-like helicase C-terminal domain Sdiek1_1862 PF00580 UvrD/REP helicase N-terminal domain Sdiek1_1869 PF05970 PIF1-like helicase Sdiek1_1869 PF02689 Helicase Sdiek1_1872 PF08534 Redoxin Sdiek1_1874 PF00403 Heavy-metal-associated domain Sdiek1_1875 PF00403 Heavy-metal-associated domain Sdiek1_1876 PF01966 HD domain Sdiek1_1877 PF02646 RmuC family Sdiek1_1879 PF01795 MraW methylase family Sdiek1_1880 PF00202 Aminotransferase class-III Sdiek1_1881 PF13145 PPIC-type PPIASE domain Sdiek1_1882 PF02491 SHS2 domain inserted in FTSA Sdiek1_1883 PF00091 Tubulin/FtsZ family, GTPase domain Sdiek1_1883 PF12327 FtsZ family, C-terminal domain Sdiek1_1885 PF05175 Methyltransferase small domain Sdiek1_1885 PF17827 PrmC N-terminal domain Sdiek1_1885 PF02390 Putative methyltransferase Sdiek1_1886 PF01435 Peptidase family M48 Sdiek1_1888 PF12729 Four helix bundle sensory module for signal transduction Sdiek1_1888 PF00672 HAMP domain Sdiek1_1888 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1890 PF00672 HAMP domain Sdiek1_1890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1892 PF01883 Iron-sulfur cluster assembly protein Sdiek1_1895 PF01808 AICARFT/IMPCHase bienzyme Sdiek1_1895 PF02142 MGS-like domain Sdiek1_1896 PF02600 Disulfide bond formation protein DsbB Sdiek1_1898 PF03061 Thioesterase superfamily Sdiek1_1899 PF05099 Tellurite resistance protein TerB Sdiek1_1899 PF00226 DnaJ domain Sdiek1_1900 PF00155 Aminotransferase class I and II Sdiek1_1904 PF03641 Possible lysine decarboxylase Sdiek1_1905 PF03819 MazG nucleotide pyrophosphohydrolase domain Sdiek1_1906 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Sdiek1_1906 PF02769 AIR synthase related protein, C-terminal domain Sdiek1_1906 PF00586 AIR synthase related protein, N-terminal domain Sdiek1_1907 PF00586 AIR synthase related protein, N-terminal domain Sdiek1_1907 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Sdiek1_1907 PF02769 AIR synthase related protein, C-terminal domain Sdiek1_1908 PF00563 EAL domain Sdiek1_1908 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1908 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1910 PF02416 mttA/Hcf106 family Sdiek1_1911 PF00902 Sec-independent protein translocase protein (TatC) Sdiek1_1912 PF02547 Queuosine biosynthesis protein Sdiek1_1919 PF00072 Response regulator receiver domain Sdiek1_1920 PF01627 Hpt domain Sdiek1_1920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Sdiek1_1920 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1920 PF00672 HAMP domain Sdiek1_1920 PF00072 Response regulator receiver domain Sdiek1_1921 PF10996 Beta-Casp domain Sdiek1_1921 PF00753 Metallo-beta-lactamase superfamily Sdiek1_1921 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Sdiek1_1922 PF00501 AMP-binding enzyme Sdiek1_1924 PF07715 TonB-dependent Receptor Plug Domain Sdiek1_1924 PF00593 TonB dependent receptor Sdiek1_1925 PF02386 Cation transport protein Sdiek1_1926 PF02080 TrkA-C domain Sdiek1_1926 PF02254 TrkA-N domain Sdiek1_1927 PF01641 SelR domain Sdiek1_1928 PF01595 Cyclin M transmembrane N-terminal domain Sdiek1_1928 PF00571 CBS domain Sdiek1_1929 PF13456 Reverse transcriptase-like Sdiek1_1929 PF00300 Histidine phosphatase superfamily (branch 1) Sdiek1_1930 PF12804 MobA-like NTP transferase domain Sdiek1_1931 PF02625 XdhC and CoxI family Sdiek1_1931 PF13478 XdhC Rossmann domain Sdiek1_1933 PF00501 AMP-binding enzyme Sdiek1_1933 PF14535 AMP-binding enzyme C-terminal domain Sdiek1_1934 PF04055 Radical SAM superfamily Sdiek1_1934 PF13186 Iron-sulfur cluster-binding domain Sdiek1_1936 PF01209 ubiE/COQ5 methyltransferase family Sdiek1_1938 PF07992 Pyridine nucleotide-disulphide oxidoreductase Sdiek1_1938 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Sdiek1_1938 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Sdiek1_1939 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Sdiek1_1939 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Sdiek1_1939 PF00111 2Fe-2S iron-sulfur cluster binding domain Sdiek1_1939 PF01799 [2Fe-2S] binding domain Sdiek1_1940 PF01627 Hpt domain Sdiek1_1940 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_1940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_1940 PF00497 Bacterial extracellular solute-binding proteins, family 3 Sdiek1_1940 PF00072 Response regulator receiver domain Sdiek1_1941 PF01627 Hpt domain Sdiek1_1941 PF00072 Response regulator receiver domain Sdiek1_1941 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_1942 PF00924 Mechanosensitive ion channel Sdiek1_1943 PF00982 Glycosyltransferase family 20 Sdiek1_1943 PF05116 Sucrose-6F-phosphate phosphohydrolase Sdiek1_1944 PF14437 MafB19-like deaminase Sdiek1_1945 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Sdiek1_1945 PF18764 Nitrous oxide reductase propeller repeat Sdiek1_1945 PF18793 Nitrous oxide reductase propeller repeat 2 Sdiek1_1949 PF02146 Sir2 family Sdiek1_1951 PF02310 B12 binding domain Sdiek1_1951 PF02607 B12 binding domain Sdiek1_1951 PF02574 Homocysteine S-methyltransferase Sdiek1_1951 PF02965 Vitamin B12 dependent methionine synthase, activation domain Sdiek1_1951 PF00809 Pterin binding enzyme Sdiek1_1952 PF13458 Periplasmic binding protein Sdiek1_1954 PF00672 HAMP domain Sdiek1_1954 PF02743 Cache domain Sdiek1_1954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1955 PF01810 LysE type translocator Sdiek1_1956 PF00892 EamA-like transporter family Sdiek1_1957 PF02743 Cache domain Sdiek1_1957 PF00672 HAMP domain Sdiek1_1957 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1958 PF00884 Sulfatase Sdiek1_1959 PF00909 Ammonium Transporter Family Sdiek1_1960 PF00543 Nitrogen regulatory protein P-II Sdiek1_1963 PF01966 HD domain Sdiek1_1963 PF00072 Response regulator receiver domain Sdiek1_1964 PF02092 Glycyl-tRNA synthetase beta subunit Sdiek1_1967 PF00484 Carbonic anhydrase Sdiek1_1968 PF06865 Pyrimidine/purine nucleoside phosphorylase Sdiek1_1969 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_1969 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1969 PF00563 EAL domain Sdiek1_1972 PF00588 SpoU rRNA Methylase family Sdiek1_1973 PF00551 Formyl transferase Sdiek1_1973 PF01842 ACT domain Sdiek1_1974 PF12627 Probable RNA and SrmB- binding site of polymerase A Sdiek1_1974 PF01743 Poly A polymerase head domain Sdiek1_1974 PF13735 tRNA nucleotidyltransferase domain 2 putative Sdiek1_1977 PF00180 Isocitrate/isopropylmalate dehydrogenase Sdiek1_1978 PF00694 Aconitase C-terminal domain Sdiek1_1979 PF00005 ABC transporter Sdiek1_1980 PF00873 AcrB/AcrD/AcrF family Sdiek1_1983 PF02040 Arsenical pump membrane protein Sdiek1_1985 PF03372 Endonuclease/Exonuclease/phosphatase family Sdiek1_1988 PF00293 NUDIX domain Sdiek1_1988 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Sdiek1_1988 PF09297 NADH pyrophosphatase zinc ribbon domain Sdiek1_1989 PF00174 Oxidoreductase molybdopterin binding domain Sdiek1_1990 PF01794 Ferric reductase like transmembrane component Sdiek1_1993 PF02743 Cache domain Sdiek1_1993 PF00672 HAMP domain Sdiek1_1993 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1994 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_1994 PF17202 Single cache domain 3 Sdiek1_1994 PF00672 HAMP domain Sdiek1_1996 PF03358 NADPH-dependent FMN reductase Sdiek1_1997 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Sdiek1_1999 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_1999 PF08448 PAS fold Sdiek1_2001 PF09962 Uncharacterized conserved protein (DUF2196) Sdiek1_2002 PF09382 RQC domain Sdiek1_2002 PF16124 RecQ zinc-binding Sdiek1_2002 PF00570 HRDC domain Sdiek1_2002 PF00271 Helicase conserved C-terminal domain Sdiek1_2002 PF00270 DEAD/DEAH box helicase Sdiek1_2008 PF00271 Helicase conserved C-terminal domain Sdiek1_2008 PF00270 DEAD/DEAH box helicase Sdiek1_2011 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2011 PF00672 HAMP domain Sdiek1_2011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2012 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2012 PF00072 Response regulator receiver domain Sdiek1_2018 PF16177 Acetyl-coenzyme A synthetase N-terminus Sdiek1_2018 PF13193 AMP-binding enzyme C-terminal domain Sdiek1_2018 PF00501 AMP-binding enzyme Sdiek1_2020 PF00285 Citrate synthase, C-terminal domain Sdiek1_2021 PF03972 MmgE/PrpD family Sdiek1_2023 PF08274 PhnA Zinc-Ribbon Sdiek1_2023 PF03831 PhnA domain Sdiek1_2025 PF03591 AzlC protein Sdiek1_2027 PF00460 Flagella basal body rod protein Sdiek1_2027 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Sdiek1_2028 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Sdiek1_2028 PF00460 Flagella basal body rod protein Sdiek1_2029 PF04539 Sigma-70 region 3 Sdiek1_2029 PF04542 Sigma-70 region 2 Sdiek1_2029 PF00140 Sigma-70 factor, region 1.2 Sdiek1_2029 PF04545 Sigma-70, region 4 Sdiek1_2031 PF01638 HxlR-like helix-turn-helix Sdiek1_2034 PF00005 ABC transporter Sdiek1_2035 PF00950 ABC 3 transport family Sdiek1_2036 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Sdiek1_2036 PF01297 Zinc-uptake complex component A periplasmic Sdiek1_2038 PF13193 AMP-binding enzyme C-terminal domain Sdiek1_2038 PF16177 Acetyl-coenzyme A synthetase N-terminus Sdiek1_2038 PF00501 AMP-binding enzyme Sdiek1_2039 PF00474 Sodium:solute symporter family Sdiek1_2040 PF04341 Protein of unknown function, DUF485 Sdiek1_2041 PF00072 Response regulator receiver domain Sdiek1_2041 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2043 PF04371 Porphyromonas-type peptidyl-arginine deiminase Sdiek1_2044 PF16916 Dimerisation domain of Zinc Transporter Sdiek1_2044 PF01545 Cation efflux family Sdiek1_2045 PF07670 Nucleoside recognition Sdiek1_2045 PF02421 Ferrous iron transport protein B Sdiek1_2045 PF07664 Ferrous iron transport protein B C terminus Sdiek1_2046 PF04023 FeoA domain Sdiek1_2047 PF00795 Carbon-nitrogen hydrolase Sdiek1_2051 PF03459 TOBE domain Sdiek1_2052 PF00293 NUDIX domain Sdiek1_2053 PF01544 CorA-like Mg2+ transporter protein Sdiek1_2054 PF04225 Opacity-associated protein A LysM-like domain Sdiek1_2054 PF01551 Peptidase family M23 Sdiek1_2056 PF02913 FAD linked oxidases, C-terminal domain Sdiek1_2056 PF01565 FAD binding domain Sdiek1_2057 PF03631 Virulence factor BrkB Sdiek1_2059 PF03796 DnaB-like helicase C terminal domain Sdiek1_2059 PF00772 DnaB-like helicase N terminal domain Sdiek1_2060 PF04551 GcpE protein Sdiek1_2061 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Sdiek1_2061 PF18074 Primosomal protein N C-terminal domain Sdiek1_2061 PF00271 Helicase conserved C-terminal domain Sdiek1_2061 PF00270 DEAD/DEAH box helicase Sdiek1_2062 PF07963 Prokaryotic N-terminal methylation motif Sdiek1_2062 PF00114 Pilin (bacterial filament) Sdiek1_2063 PF07963 Prokaryotic N-terminal methylation motif Sdiek1_2063 PF00114 Pilin (bacterial filament) Sdiek1_2066 PF17757 UvrB interaction domain Sdiek1_2066 PF04851 Type III restriction enzyme, res subunit Sdiek1_2066 PF02151 UvrB/uvrC motif Sdiek1_2066 PF00271 Helicase conserved C-terminal domain Sdiek1_2066 PF12344 Ultra-violet resistance protein B Sdiek1_2068 PF17941 Polyphosphate kinase C-terminal domain 1 Sdiek1_2068 PF13090 Polyphosphate kinase C-terminal domain 2 Sdiek1_2068 PF02503 Polyphosphate kinase middle domain Sdiek1_2068 PF13089 Polyphosphate kinase N-terminal domain Sdiek1_2069 PF00132 Bacterial transferase hexapeptide (six repeats) Sdiek1_2070 PF14579 Helix-hairpin-helix motif Sdiek1_2070 PF07733 Bacterial DNA polymerase III alpha NTPase domain Sdiek1_2070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Sdiek1_2070 PF00929 Exonuclease Sdiek1_2070 PF02811 PHP domain Sdiek1_2071 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Sdiek1_2072 PF00834 Ribulose-phosphate 3 epimerase family Sdiek1_2073 PF00830 Ribosomal L28 family Sdiek1_2074 PF01960 ArgJ family Sdiek1_2077 PF13277 YmdB-like protein Sdiek1_2078 PF02559 CarD-like/TRCF domain Sdiek1_2078 PF00270 DEAD/DEAH box helicase Sdiek1_2078 PF17757 UvrB interaction domain Sdiek1_2078 PF03461 TRCF domain Sdiek1_2078 PF00271 Helicase conserved C-terminal domain Sdiek1_2080 PF01551 Peptidase family M23 Sdiek1_2080 PF04225 Opacity-associated protein A LysM-like domain Sdiek1_2081 PF08245 Mur ligase middle domain Sdiek1_2082 PF07694 5TMR of 5TMR-LYT Sdiek1_2082 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2084 PF00133 tRNA synthetases class I (I, L, M and V) Sdiek1_2084 PF13603 Leucyl-tRNA synthetase, Domain 2 Sdiek1_2084 PF09334 tRNA synthetases class I (M) Sdiek1_2085 PF07549 SecD/SecF GG Motif Sdiek1_2085 PF02355 Protein export membrane protein Sdiek1_2086 PF02355 Protein export membrane protein Sdiek1_2087 PF02699 Preprotein translocase subunit Sdiek1_2089 PF02773 S-adenosylmethionine synthetase, C-terminal domain Sdiek1_2089 PF02772 S-adenosylmethionine synthetase, central domain Sdiek1_2089 PF00438 S-adenosylmethionine synthetase, N-terminal domain Sdiek1_2091 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Sdiek1_2092 PF07724 AAA domain (Cdc48 subfamily) Sdiek1_2092 PF00004 ATPase family associated with various cellular activities (AAA) Sdiek1_2092 PF02861 Clp amino terminal domain, pathogenicity island component Sdiek1_2092 PF10431 C-terminal, D2-small domain, of ClpB protein Sdiek1_2092 PF17871 AAA lid domain Sdiek1_2093 PF02617 ATP-dependent Clp protease adaptor protein ClpS Sdiek1_2095 PF01668 SmpB protein Sdiek1_2096 PF00288 GHMP kinases N terminal domain Sdiek1_2097 PF02599 Global regulator protein family Sdiek1_2098 PF01509 TruB family pseudouridylate synthase (N terminal domain) Sdiek1_2099 PF00580 UvrD/REP helicase N-terminal domain Sdiek1_2099 PF13361 UvrD-like helicase C-terminal domain Sdiek1_2100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_2100 PF03466 LysR substrate binding domain Sdiek1_2104 PF00425 chorismate binding enzyme Sdiek1_2105 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Sdiek1_2105 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Sdiek1_2109 PF12833 Helix-turn-helix domain Sdiek1_2109 PF06445 GyrI-like small molecule binding domain Sdiek1_2110 PF00155 Aminotransferase class I and II Sdiek1_2110 PF00392 Bacterial regulatory proteins, gntR family Sdiek1_2112 PF01245 Ribosomal protein L19 Sdiek1_2113 PF01746 tRNA (Guanine-1)-methyltransferase Sdiek1_2114 PF01782 RimM N-terminal domain Sdiek1_2116 PF02978 Signal peptide binding domain Sdiek1_2116 PF02881 SRP54-type protein, helical bundle domain Sdiek1_2116 PF00448 SRP54-type protein, GTPase domain Sdiek1_2117 PF00849 RNA pseudouridylate synthase Sdiek1_2118 PF00534 Glycosyl transferases group 1 Sdiek1_2118 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Sdiek1_2120 PF01784 NIF3 (NGG1p interacting factor 3) Sdiek1_2121 PF02091 Glycyl-tRNA synthetase alpha subunit Sdiek1_2123 PF00731 AIR carboxylase Sdiek1_2126 PF02811 PHP domain Sdiek1_2127 PF03951 Glutamine synthetase, beta-Grasp domain Sdiek1_2127 PF00120 Glutamine synthetase, catalytic domain Sdiek1_2128 PF17092 Penicillin-binding protein OB-like domain Sdiek1_2128 PF00912 Transglycosylase Sdiek1_2128 PF00905 Penicillin binding protein transpeptidase domain Sdiek1_2129 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Sdiek1_2129 PF00005 ABC transporter Sdiek1_2130 PF00155 Aminotransferase class I and II Sdiek1_2131 PF02545 Maf-like protein Sdiek1_2133 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Sdiek1_2133 PF01411 tRNA synthetases class II (A) Sdiek1_2133 PF02272 DHHA1 domain Sdiek1_2138 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Sdiek1_2139 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Sdiek1_2139 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Sdiek1_2140 PF00762 Ferrochelatase Sdiek1_2141 PF00905 Penicillin binding protein transpeptidase domain Sdiek1_2141 PF03717 Penicillin-binding Protein dimerisation domain Sdiek1_2142 PF02049 Flagellar hook-basal body complex protein FliE Sdiek1_2143 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Sdiek1_2143 PF00460 Flagella basal body rod protein Sdiek1_2144 PF00460 Flagella basal body rod protein Sdiek1_2145 PF01098 Cell cycle protein Sdiek1_2146 PF03033 Glycosyltransferase family 28 N-terminal domain Sdiek1_2146 PF04101 Glycosyltransferase family 28 C-terminal domain Sdiek1_2149 PF07670 Nucleoside recognition Sdiek1_2161 PF00117 Glutamine amidotransferase class-I Sdiek1_2162 PF07690 Major Facilitator Superfamily Sdiek1_2163 PF01553 Acyltransferase Sdiek1_2163 PF00501 AMP-binding enzyme Sdiek1_2164 PF01022 Bacterial regulatory protein, arsR family Sdiek1_2166 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Sdiek1_2167 PF04223 Citrate lyase, alpha subunit (CitF) Sdiek1_2168 PF03328 HpcH/HpaI aldolase/citrate lyase family Sdiek1_2169 PF06857 Malonate decarboxylase delta subunit (MdcD) Sdiek1_2170 PF08218 Citrate lyase ligase C-terminal domain Sdiek1_2172 PF07690 Major Facilitator Superfamily Sdiek1_2174 PF00860 Permease family Sdiek1_2175 PF04055 Radical SAM superfamily Sdiek1_2176 PF00291 Pyridoxal-phosphate dependent enzyme Sdiek1_2178 PF08335 GlnD PII-uridylyltransferase Sdiek1_2178 PF01842 ACT domain Sdiek1_2178 PF01966 HD domain Sdiek1_2178 PF01909 Nucleotidyltransferase domain Sdiek1_2179 PF01380 SIS domain Sdiek1_2180 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2184 PF00563 EAL domain Sdiek1_2184 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2184 PF13426 PAS domain Sdiek1_2186 PF00520 Ion transport protein Sdiek1_2186 PF00027 Cyclic nucleotide-binding domain Sdiek1_2190 PF00005 ABC transporter Sdiek1_2190 PF12848 ABC transporter Sdiek1_2191 PF13247 4Fe-4S dicluster domain Sdiek1_2192 PF00361 Proton-conducting membrane transporter Sdiek1_2193 PF00146 NADH dehydrogenase Sdiek1_2194 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sdiek1_2195 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Sdiek1_2195 PF00361 Proton-conducting membrane transporter Sdiek1_2196 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Sdiek1_2196 PF00361 Proton-conducting membrane transporter Sdiek1_2197 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Sdiek1_2197 PF00374 Nickel-dependent hydrogenase Sdiek1_2197 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Sdiek1_2199 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Sdiek1_2206 PF00899 ThiF family Sdiek1_2207 PF00072 Response regulator receiver domain Sdiek1_2207 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2209 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Sdiek1_2209 PF14602 Hexapeptide repeat of succinyl-transferase Sdiek1_2210 PF01883 Iron-sulfur cluster assembly protein Sdiek1_2210 PF10609 NUBPL iron-transfer P-loop NTPase Sdiek1_2211 PF02542 YgbB family Sdiek1_2211 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Sdiek1_2214 PF14306 PUA-like domain Sdiek1_2214 PF01747 ATP-sulfurylase Sdiek1_2216 PF04264 YceI-like domain Sdiek1_2217 PF09186 Domain of unknown function (DUF1949) Sdiek1_2217 PF01205 Uncharacterized protein family UPF0029 Sdiek1_2218 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Sdiek1_2218 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Sdiek1_2219 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2221 PF00005 ABC transporter Sdiek1_2221 PF08402 TOBE domain Sdiek1_2222 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_2225 PF03459 TOBE domain Sdiek1_2226 PF00768 D-alanyl-D-alanine carboxypeptidase Sdiek1_2226 PF07943 Penicillin-binding protein 5, C-terminal domain Sdiek1_2227 PF03807 NADP oxidoreductase coenzyme F420-dependent Sdiek1_2227 PF14748 Pyrroline-5-carboxylate reductase dimerisation Sdiek1_2228 PF00005 ABC transporter Sdiek1_2228 PF02687 FtsX-like permease family Sdiek1_2228 PF12704 MacB-like periplasmic core domain Sdiek1_2229 PF00005 ABC transporter Sdiek1_2234 PF05552 Conserved TM helix Sdiek1_2234 PF00924 Mechanosensitive ion channel Sdiek1_2236 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2236 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2236 PF00563 EAL domain Sdiek1_2256 PF00263 Bacterial type II and III secretion system protein Sdiek1_2256 PF03958 Bacterial type II/III secretion system short domain Sdiek1_2269 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Sdiek1_2270 PF01029 NusB family Sdiek1_2271 PF00885 6,7-dimethyl-8-ribityllumazine synthase Sdiek1_2273 PF00793 DAHP synthetase I family Sdiek1_2274 PF00892 EamA-like transporter family Sdiek1_2275 PF00924 Mechanosensitive ion channel Sdiek1_2276 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Sdiek1_2276 PF01926 50S ribosome-binding GTPase Sdiek1_2277 PF01202 Shikimate kinase Sdiek1_2278 PF00579 tRNA synthetases class I (W and Y) Sdiek1_2279 PF02403 Seryl-tRNA synthetase N-terminal domain Sdiek1_2279 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Sdiek1_2281 PF00682 HMGL-like Sdiek1_2281 PF08502 LeuA allosteric (dimerisation) domain Sdiek1_2282 PF01066 CDP-alcohol phosphatidyltransferase Sdiek1_2284 PF17862 AAA+ lid domain Sdiek1_2284 PF01434 Peptidase family M41 Sdiek1_2284 PF00004 ATPase family associated with various cellular activities (AAA) Sdiek1_2286 PF00072 Response regulator receiver domain Sdiek1_2287 PF00977 Histidine biosynthesis protein Sdiek1_2288 PF00117 Glutamine amidotransferase class-I Sdiek1_2290 PF18527 STT3/PglB C-terminal beta-barrel domain Sdiek1_2290 PF02516 Oligosaccharyl transferase STT3 subunit Sdiek1_2291 PF00953 Glycosyl transferase family 4 Sdiek1_2292 PF00535 Glycosyl transferase family 2 Sdiek1_2293 PF00535 Glycosyl transferase family 2 Sdiek1_2294 PF00535 Glycosyl transferase family 2 Sdiek1_2295 PF00535 Glycosyl transferase family 2 Sdiek1_2297 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Sdiek1_2299 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Sdiek1_2299 PF00205 Thiamine pyrophosphate enzyme, central domain Sdiek1_2299 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Sdiek1_2300 PF16363 GDP-mannose 4,6 dehydratase Sdiek1_2301 PF00483 Nucleotidyl transferase Sdiek1_2302 PF04321 RmlD substrate binding domain Sdiek1_2303 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Sdiek1_2304 PF01068 ATP dependent DNA ligase domain Sdiek1_2304 PF14743 DNA ligase OB-like domain Sdiek1_2305 PF16363 GDP-mannose 4,6 dehydratase Sdiek1_2306 PF00483 Nucleotidyl transferase Sdiek1_2307 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Sdiek1_2307 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Sdiek1_2307 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Sdiek1_2307 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Sdiek1_2310 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Sdiek1_2314 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Sdiek1_2315 PF00535 Glycosyl transferase family 2 Sdiek1_2316 PF00535 Glycosyl transferase family 2 Sdiek1_2319 PF13580 SIS domain Sdiek1_2320 PF01467 Cytidylyltransferase-like Sdiek1_2320 PF00294 pfkB family carbohydrate kinase Sdiek1_2321 PF01370 NAD dependent epimerase/dehydratase family Sdiek1_2322 PF08645 Polynucleotide kinase 3 phosphatase Sdiek1_2326 PF00403 Heavy-metal-associated domain Sdiek1_2328 PF00563 EAL domain Sdiek1_2328 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2328 PF08448 PAS fold Sdiek1_2329 PF00892 EamA-like transporter family Sdiek1_2332 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2332 PF17158 Membrane-associated sensor, integral membrane domain Sdiek1_2333 PF08534 Redoxin Sdiek1_2336 PF00677 Lumazine binding domain Sdiek1_2337 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2337 PF00672 HAMP domain Sdiek1_2337 PF02743 Cache domain Sdiek1_2338 PF02626 Carboxyltransferase domain, subdomain A and B Sdiek1_2340 PF03746 LamB/YcsF family Sdiek1_2341 PF13932 GidA associated domain Sdiek1_2341 PF01134 Glucose inhibited division protein A Sdiek1_2342 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Sdiek1_2342 PF00355 Rieske [2Fe-2S] domain Sdiek1_2343 PF00032 Cytochrome b(C-terminal)/b6/petD Sdiek1_2343 PF00033 Cytochrome b/b6/petB Sdiek1_2344 PF02167 Cytochrome C1 family Sdiek1_2346 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Sdiek1_2347 PF02801 Beta-ketoacyl synthase, C-terminal domain Sdiek1_2347 PF00109 Beta-ketoacyl synthase, N-terminal domain Sdiek1_2348 PF00550 Phosphopantetheine attachment site Sdiek1_2350 PF01676 Metalloenzyme superfamily Sdiek1_2350 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Sdiek1_2351 PF00953 Glycosyl transferase family 4 Sdiek1_2351 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Sdiek1_2352 PF08245 Mur ligase middle domain Sdiek1_2354 PF02397 Bacterial sugar transferase Sdiek1_2356 PF13439 Glycosyltransferase Family 4 Sdiek1_2356 PF00534 Glycosyl transferases group 1 Sdiek1_2357 PF00534 Glycosyl transferases group 1 Sdiek1_2357 PF13439 Glycosyltransferase Family 4 Sdiek1_2358 PF01370 NAD dependent epimerase/dehydratase family Sdiek1_2359 PF16363 GDP-mannose 4,6 dehydratase Sdiek1_2362 PF00535 Glycosyl transferase family 2 Sdiek1_2365 PF04138 GtrA-like protein Sdiek1_2369 PF00485 Phosphoribulokinase / Uridine kinase family Sdiek1_2376 PF14524 Wzt C-terminal domain Sdiek1_2376 PF00005 ABC transporter Sdiek1_2378 PF00483 Nucleotidyl transferase Sdiek1_2378 PF01050 Mannose-6-phosphate isomerase Sdiek1_2379 PF16363 GDP-mannose 4,6 dehydratase Sdiek1_2380 PF00384 Molybdopterin oxidoreductase Sdiek1_2380 PF01568 Molydopterin dinucleotide binding domain Sdiek1_2380 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_2381 PF01568 Molydopterin dinucleotide binding domain Sdiek1_2381 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_2381 PF00384 Molybdopterin oxidoreductase Sdiek1_2383 PF13247 4Fe-4S dicluster domain Sdiek1_2384 PF00072 Response regulator receiver domain Sdiek1_2384 PF13188 PAS domain Sdiek1_2384 PF08448 PAS fold Sdiek1_2384 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2385 PF00072 Response regulator receiver domain Sdiek1_2385 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2388 PF09335 SNARE associated Golgi protein Sdiek1_2389 PF12792 CSS motif domain associated with EAL Sdiek1_2389 PF00563 EAL domain Sdiek1_2393 PF03649 Uncharacterised protein family (UPF0014) Sdiek1_2394 PF02785 Biotin carboxylase C-terminal domain Sdiek1_2394 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Sdiek1_2394 PF00289 Biotin carboxylase, N-terminal domain Sdiek1_2397 PF00270 DEAD/DEAH box helicase Sdiek1_2397 PF00271 Helicase conserved C-terminal domain Sdiek1_2398 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Sdiek1_2399 PF00248 Aldo/keto reductase family Sdiek1_2400 PF07690 Major Facilitator Superfamily Sdiek1_2401 PF12833 Helix-turn-helix domain Sdiek1_2401 PF06719 AraC-type transcriptional regulator N-terminus Sdiek1_2402 PF12706 Beta-lactamase superfamily domain Sdiek1_2404 PF12849 PBP superfamily domain Sdiek1_2405 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2406 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2407 PF00005 ABC transporter Sdiek1_2408 PF00672 HAMP domain Sdiek1_2408 PF17202 Single cache domain 3 Sdiek1_2408 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2409 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Sdiek1_2410 PF00672 HAMP domain Sdiek1_2410 PF12729 Four helix bundle sensory module for signal transduction Sdiek1_2410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2412 PF01895 PhoU domain Sdiek1_2413 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2413 PF00072 Response regulator receiver domain Sdiek1_2414 PF00989 PAS fold Sdiek1_2414 PF11808 Phosphate regulon sensor protein PhoR Sdiek1_2414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2414 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2415 PF03061 Thioesterase superfamily Sdiek1_2420 PF01638 HxlR-like helix-turn-helix Sdiek1_2421 PF02525 Flavodoxin-like fold Sdiek1_2422 PF02743 Cache domain Sdiek1_2422 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2423 PF06508 Queuosine biosynthesis protein QueC Sdiek1_2424 PF04055 Radical SAM superfamily Sdiek1_2431 PF02562 PhoH-like protein Sdiek1_2433 PF07690 Major Facilitator Superfamily Sdiek1_2434 PF07690 Major Facilitator Superfamily Sdiek1_2435 PF02321 Outer membrane efflux protein Sdiek1_2436 PF00873 AcrB/AcrD/AcrF family Sdiek1_2437 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_2437 PF00529 HlyD membrane-fusion protein of T1SS Sdiek1_2440 PF01243 Pyridoxamine 5'-phosphate oxidase Sdiek1_2441 PF00375 Sodium:dicarboxylate symporter family Sdiek1_2442 PF02664 S-Ribosylhomocysteinase (LuxS) Sdiek1_2447 PF10371 Domain of unknown function Sdiek1_2447 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Sdiek1_2447 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Sdiek1_2447 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Sdiek1_2447 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Sdiek1_2448 PF13419 Haloacid dehalogenase-like hydrolase Sdiek1_2449 PF00939 Sodium:sulfate symporter transmembrane region Sdiek1_2451 PF00924 Mechanosensitive ion channel Sdiek1_2451 PF05552 Conserved TM helix Sdiek1_2452 PF05736 OprF membrane domain Sdiek1_2452 PF00691 OmpA family Sdiek1_2453 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Sdiek1_2454 PF01161 Phosphatidylethanolamine-binding protein Sdiek1_2455 PF12833 Helix-turn-helix domain Sdiek1_2455 PF06719 AraC-type transcriptional regulator N-terminus Sdiek1_2456 PF00958 GMP synthase C terminal domain Sdiek1_2456 PF13673 Acetyltransferase (GNAT) domain Sdiek1_2456 PF03352 Methyladenine glycosylase Sdiek1_2456 PF13302 Acetyltransferase (GNAT) domain Sdiek1_2456 PF00117 Glutamine amidotransferase class-I Sdiek1_2460 PF00465 Iron-containing alcohol dehydrogenase Sdiek1_2463 PF00654 Voltage gated chloride channel Sdiek1_2464 PF02222 ATP-grasp domain Sdiek1_2466 PF03848 Tellurite resistance protein TehB Sdiek1_2468 PF03091 CutA1 divalent ion tolerance protein Sdiek1_2469 PF00380 Ribosomal protein S9/S16 Sdiek1_2470 PF00572 Ribosomal protein L13 Sdiek1_2471 PF00580 UvrD/REP helicase N-terminal domain Sdiek1_2471 PF13361 UvrD-like helicase C-terminal domain Sdiek1_2471 PF12705 PD-(D/E)XK nuclease superfamily Sdiek1_2477 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Sdiek1_2477 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Sdiek1_2479 PF00115 Cytochrome C and Quinol oxidase polypeptide I Sdiek1_2480 PF00072 Response regulator receiver domain Sdiek1_2480 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2481 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Sdiek1_2485 PF00117 Glutamine amidotransferase class-I Sdiek1_2489 PF00709 Adenylosuccinate synthetase Sdiek1_2490 PF13393 Histidyl-tRNA synthetase Sdiek1_2491 PF00266 Aminotransferase class-V Sdiek1_2492 PF00672 HAMP domain Sdiek1_2492 PF17200 Single Cache domain 2 Sdiek1_2492 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2493 PF13419 Haloacid dehalogenase-like hydrolase Sdiek1_2494 PF02779 Transketolase, pyrimidine binding domain Sdiek1_2494 PF00456 Transketolase, thiamine diphosphate binding domain Sdiek1_2494 PF02780 Transketolase, C-terminal domain Sdiek1_2495 PF00348 Polyprenyl synthetase Sdiek1_2498 PF02575 YbaB/EbfC DNA-binding family Sdiek1_2499 PF02261 Aspartate decarboxylase Sdiek1_2500 PF08245 Mur ligase middle domain Sdiek1_2500 PF02875 Mur ligase family, glutamate ligase domain Sdiek1_2503 PF01196 Ribosomal protein L17 Sdiek1_2504 PF01000 RNA polymerase Rpb3/RpoA insert domain Sdiek1_2504 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Sdiek1_2504 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Sdiek1_2505 PF00163 Ribosomal protein S4/S9 N-terminal domain Sdiek1_2505 PF01479 S4 domain Sdiek1_2506 PF00411 Ribosomal protein S11 Sdiek1_2507 PF00416 Ribosomal protein S13/S18 Sdiek1_2508 PF01176 Translation initiation factor 1A / IF-1 Sdiek1_2509 PF00557 Metallopeptidase family M24 Sdiek1_2510 PF00344 SecY translocase Sdiek1_2511 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Sdiek1_2512 PF00333 Ribosomal protein S5, N-terminal domain Sdiek1_2512 PF03719 Ribosomal protein S5, C-terminal domain Sdiek1_2513 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Sdiek1_2514 PF00347 Ribosomal protein L6 Sdiek1_2515 PF00410 Ribosomal protein S8 Sdiek1_2516 PF00281 Ribosomal protein L5 Sdiek1_2516 PF00673 ribosomal L5P family C-terminus Sdiek1_2517 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Sdiek1_2517 PF00467 KOW motif Sdiek1_2518 PF00238 Ribosomal protein L14p/L23e Sdiek1_2519 PF00366 Ribosomal protein S17 Sdiek1_2520 PF00831 Ribosomal L29 protein Sdiek1_2521 PF00252 Ribosomal protein L16p/L10e Sdiek1_2522 PF00189 Ribosomal protein S3, C-terminal domain Sdiek1_2522 PF07650 KH domain Sdiek1_2523 PF00237 Ribosomal protein L22p/L17e Sdiek1_2524 PF00203 Ribosomal protein S19 Sdiek1_2525 PF03947 Ribosomal Proteins L2, C-terminal domain Sdiek1_2525 PF00181 Ribosomal Proteins L2, RNA binding domain Sdiek1_2526 PF00276 Ribosomal protein L23 Sdiek1_2527 PF00573 Ribosomal protein L4/L1 family Sdiek1_2528 PF00297 Ribosomal protein L3 Sdiek1_2529 PF00338 Ribosomal protein S10p/S20e Sdiek1_2533 PF01351 Ribonuclease HII Sdiek1_2535 PF07670 Nucleoside recognition Sdiek1_2535 PF07664 Ferrous iron transport protein B C terminus Sdiek1_2535 PF02421 Ferrous iron transport protein B Sdiek1_2536 PF01264 Chorismate synthase Sdiek1_2537 PF14622 Ribonuclease-III-like Sdiek1_2537 PF00035 Double-stranded RNA binding motif Sdiek1_2538 PF00075 RNase H Sdiek1_2540 PF16730 DnaG-primase C-terminal, helicase-binding domain Sdiek1_2540 PF08275 DNA primase catalytic core, N-terminal domain Sdiek1_2540 PF01807 CHC2 zinc finger Sdiek1_2540 PF13662 Toprim domain Sdiek1_2541 PF00764 Arginosuccinate synthase Sdiek1_2542 PF00072 Response regulator receiver domain Sdiek1_2544 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2544 PF00563 EAL domain Sdiek1_2544 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2545 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2545 PF00072 Response regulator receiver domain Sdiek1_2546 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2547 PF00072 Response regulator receiver domain Sdiek1_2547 PF01339 CheB methylesterase Sdiek1_2548 PF03975 CheD chemotactic sensory transduction Sdiek1_2549 PF00672 HAMP domain Sdiek1_2549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2549 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2549 PF00989 PAS fold Sdiek1_2550 PF01739 CheR methyltransferase, SAM binding domain Sdiek1_2550 PF03705 CheR methyltransferase, all-alpha domain Sdiek1_2551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2551 PF01627 Hpt domain Sdiek1_2551 PF02895 Signal transducing histidine kinase, homodimeric domain Sdiek1_2551 PF07194 P2 response regulator binding domain Sdiek1_2551 PF01584 CheW-like domain Sdiek1_2553 PF00672 HAMP domain Sdiek1_2553 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2553 PF02203 Tar ligand binding domain homologue Sdiek1_2554 PF01584 CheW-like domain Sdiek1_2557 PF00684 DnaJ central domain Sdiek1_2557 PF01556 DnaJ C terminal domain Sdiek1_2557 PF00226 DnaJ domain Sdiek1_2562 PF03824 High-affinity nickel-transport protein Sdiek1_2563 PF03824 High-affinity nickel-transport protein Sdiek1_2565 PF00258 Flavodoxin Sdiek1_2568 PF01810 LysE type translocator Sdiek1_2569 PF01370 NAD dependent epimerase/dehydratase family Sdiek1_2569 PF08338 Domain of unknown function (DUF1731) Sdiek1_2571 PF00005 ABC transporter Sdiek1_2574 PF01810 LysE type translocator Sdiek1_2576 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2576 PF00563 EAL domain Sdiek1_2576 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2577 PF00892 EamA-like transporter family Sdiek1_2578 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2578 PF00072 Response regulator receiver domain Sdiek1_2579 PF18719 ArlS sensor domain Sdiek1_2579 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2580 PF00884 Sulfatase Sdiek1_2580 PF08019 Phosphoethanolamine transferase EptA/EptB Sdiek1_2582 PF12792 CSS motif domain associated with EAL Sdiek1_2582 PF00563 EAL domain Sdiek1_2585 PF02673 Bacitracin resistance protein BacA Sdiek1_2586 PF01613 Flavin reductase like domain Sdiek1_2587 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Sdiek1_2588 PF01869 BadF/BadG/BcrA/BcrD ATPase family Sdiek1_2591 PF00206 Lyase Sdiek1_2591 PF10415 Fumarase C C-terminus Sdiek1_2592 PF10415 Fumarase C C-terminus Sdiek1_2592 PF00206 Lyase Sdiek1_2593 PF03605 Anaerobic c4-dicarboxylate membrane transporter Sdiek1_2594 PF17763 Glutaminase/Asparaginase C-terminal domain Sdiek1_2594 PF00710 Asparaginase, N-terminal Sdiek1_2595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2595 PF00989 PAS fold Sdiek1_2595 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2596 PF00072 Response regulator receiver domain Sdiek1_2596 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2598 PF17863 AAA lid domain Sdiek1_2598 PF07726 ATPase family associated with various cellular activities (AAA) Sdiek1_2599 PF01882 Protein of unknown function DUF58 Sdiek1_2601 PF00092 von Willebrand factor type A domain Sdiek1_2610 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2623 PF00817 impB/mucB/samB family Sdiek1_2623 PF11798 IMS family HHH motif Sdiek1_2623 PF11799 impB/mucB/samB family C-terminal domain Sdiek1_2624 PF00690 Cation transporter/ATPase, N-terminus Sdiek1_2624 PF00689 Cation transporting ATPase, C-terminus Sdiek1_2625 PF01545 Cation efflux family Sdiek1_2625 PF16916 Dimerisation domain of Zinc Transporter Sdiek1_2632 PF00586 AIR synthase related protein, N-terminal domain Sdiek1_2632 PF02769 AIR synthase related protein, C-terminal domain Sdiek1_2633 PF01206 Sulfurtransferase TusA Sdiek1_2635 PF01464 Transglycosylase SLT domain Sdiek1_2635 PF00497 Bacterial extracellular solute-binding proteins, family 3 Sdiek1_2637 PF13426 PAS domain Sdiek1_2637 PF00563 EAL domain Sdiek1_2637 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2637 PF05231 MASE1 Sdiek1_2637 PF08447 PAS fold Sdiek1_2637 PF08448 PAS fold Sdiek1_2639 PF07690 Major Facilitator Superfamily Sdiek1_2643 PF00005 ABC transporter Sdiek1_2644 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2645 PF12849 PBP superfamily domain Sdiek1_2647 PF02634 FdhD/NarQ family Sdiek1_2649 PF13247 4Fe-4S dicluster domain Sdiek1_2654 PF13247 4Fe-4S dicluster domain Sdiek1_2655 PF01568 Molydopterin dinucleotide binding domain Sdiek1_2655 PF00384 Molybdopterin oxidoreductase Sdiek1_2655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_2657 PF00593 TonB dependent receptor Sdiek1_2657 PF07660 Secretin and TonB N terminus short domain Sdiek1_2657 PF07715 TonB-dependent Receptor Plug Domain Sdiek1_2658 PF00005 ABC transporter Sdiek1_2661 PF00296 Luciferase-like monooxygenase Sdiek1_2664 PF02472 Biopolymer transport protein ExbD/TolR Sdiek1_2665 PF01618 MotA/TolQ/ExbB proton channel family Sdiek1_2666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_2666 PF03459 TOBE domain Sdiek1_2670 PF13649 Methyltransferase domain Sdiek1_2671 PF03459 TOBE domain Sdiek1_2672 PF00005 ABC transporter Sdiek1_2672 PF12857 TOBE-like domain Sdiek1_2672 PF17850 CysA C-terminal regulatory domain Sdiek1_2673 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2674 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2676 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Sdiek1_2685 PF13247 4Fe-4S dicluster domain Sdiek1_2691 PF13493 Domain of unknown function (DUF4118) Sdiek1_2691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2691 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2691 PF02702 Osmosensitive K+ channel His kinase sensor domain Sdiek1_2693 PF03841 L-seryl-tRNA selenium transferase Sdiek1_2694 PF03144 Elongation factor Tu domain 2 Sdiek1_2694 PF09105 Elongation factor SelB, winged helix Sdiek1_2694 PF09107 Elongation factor SelB, winged helix Sdiek1_2694 PF00009 Elongation factor Tu GTP binding domain Sdiek1_2694 PF09106 Elongation factor SelB, winged helix Sdiek1_2697 PF04264 YceI-like domain Sdiek1_2698 PF17954 Quercetinase C-terminal cupin domain Sdiek1_2698 PF02678 Pirin Sdiek1_2705 PF00072 Response regulator receiver domain Sdiek1_2705 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2706 PF00672 HAMP domain Sdiek1_2706 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2706 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2707 PF01965 DJ-1/PfpI family Sdiek1_2710 PF07977 FabA-like domain Sdiek1_2711 PF00535 Glycosyl transferase family 2 Sdiek1_2717 PF00501 AMP-binding enzyme Sdiek1_2717 PF16177 Acetyl-coenzyme A synthetase N-terminus Sdiek1_2717 PF13193 AMP-binding enzyme C-terminal domain Sdiek1_2719 PF12697 Alpha/beta hydrolase family Sdiek1_2722 PF00109 Beta-ketoacyl synthase, N-terminal domain Sdiek1_2722 PF02801 Beta-ketoacyl synthase, C-terminal domain Sdiek1_2723 PF00550 Phosphopantetheine attachment site Sdiek1_2724 PF00270 DEAD/DEAH box helicase Sdiek1_2724 PF00271 Helicase conserved C-terminal domain Sdiek1_2730 PF01841 Transglutaminase-like superfamily Sdiek1_2732 PF02086 D12 class N6 adenine-specific DNA methyltransferase Sdiek1_2733 PF00072 Response regulator receiver domain Sdiek1_2734 PF01425 Amidase Sdiek1_2735 PF01425 Amidase Sdiek1_2738 PF02785 Biotin carboxylase C-terminal domain Sdiek1_2738 PF00289 Biotin carboxylase, N-terminal domain Sdiek1_2738 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Sdiek1_2741 PF08402 TOBE domain Sdiek1_2741 PF00005 ABC transporter Sdiek1_2742 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2745 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2745 PF00072 Response regulator receiver domain Sdiek1_2747 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2747 PF00072 Response regulator receiver domain Sdiek1_2748 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2748 PF02702 Osmosensitive K+ channel His kinase sensor domain Sdiek1_2748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2748 PF13493 Domain of unknown function (DUF4118) Sdiek1_2749 PF02669 K+-transporting ATPase, c chain Sdiek1_2751 PF03814 Potassium-transporting ATPase A subunit Sdiek1_2752 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Sdiek1_2753 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2754 PF00106 short chain dehydrogenase Sdiek1_2756 PF16653 Saccharopine dehydrogenase C-terminal domain Sdiek1_2756 PF03435 Saccharopine dehydrogenase NADP binding domain Sdiek1_2757 PF01725 Ham1 family Sdiek1_2759 PF07690 Major Facilitator Superfamily Sdiek1_2760 PF09335 SNARE associated Golgi protein Sdiek1_2763 PF00939 Sodium:sulfate symporter transmembrane region Sdiek1_2766 PF03454 MoeA C-terminal region (domain IV) Sdiek1_2766 PF00994 Probable molybdopterin binding domain Sdiek1_2766 PF03453 MoeA N-terminal region (domain I and II) Sdiek1_2767 PF02391 MoaE protein Sdiek1_2769 PF04324 BFD-like [2Fe-2S] binding domain Sdiek1_2769 PF01106 NifU-like domain Sdiek1_2769 PF01592 NifU-like N terminal domain Sdiek1_2770 PF00266 Aminotransferase class-V Sdiek1_2771 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Sdiek1_2771 PF18269 T3SS EscN ATPase C-terminal domain Sdiek1_2772 PF01227 GTP cyclohydrolase I Sdiek1_2773 PF05698 Bacterial trigger factor protein (TF) C-terminus Sdiek1_2773 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Sdiek1_2773 PF05697 Bacterial trigger factor protein (TF) Sdiek1_2774 PF00574 Clp protease Sdiek1_2776 PF01327 Polypeptide deformylase Sdiek1_2777 PF01078 Magnesium chelatase, subunit ChlI Sdiek1_2777 PF13335 Magnesium chelatase, subunit ChlI C-terminal Sdiek1_2778 PF01256 Carbohydrate kinase Sdiek1_2778 PF03853 YjeF-related protein N-terminus Sdiek1_2779 PF00551 Formyl transferase Sdiek1_2780 PF05690 Thiazole biosynthesis protein ThiG Sdiek1_2786 PF00732 GMC oxidoreductase Sdiek1_2786 PF05199 GMC oxidoreductase Sdiek1_2790 PF00072 Response regulator receiver domain Sdiek1_2790 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2791 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2791 PF00672 HAMP domain Sdiek1_2792 PF13533 Biotin-lipoyl like Sdiek1_2793 PF00873 AcrB/AcrD/AcrF family Sdiek1_2794 PF00873 AcrB/AcrD/AcrF family Sdiek1_2795 PF02321 Outer membrane efflux protein Sdiek1_2795 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Sdiek1_2797 PF00535 Glycosyl transferase family 2 Sdiek1_2798 PF04794 YdjC-like protein Sdiek1_2803 PF00171 Aldehyde dehydrogenase family Sdiek1_2806 PF01842 ACT domain Sdiek1_2806 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Sdiek1_2806 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sdiek1_2809 PF03824 High-affinity nickel-transport protein Sdiek1_2810 PF02743 Cache domain Sdiek1_2810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2810 PF00672 HAMP domain Sdiek1_2811 PF16921 Tex protein YqgF-like domain Sdiek1_2811 PF09371 Tex-like protein N-terminal domain Sdiek1_2811 PF00575 S1 RNA binding domain Sdiek1_2811 PF17674 HHH domain Sdiek1_2812 PF00563 EAL domain Sdiek1_2812 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2812 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2813 PF00563 EAL domain Sdiek1_2813 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2813 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2814 PF08448 PAS fold Sdiek1_2814 PF03705 CheR methyltransferase, all-alpha domain Sdiek1_2814 PF01339 CheB methylesterase Sdiek1_2814 PF01739 CheR methyltransferase, SAM binding domain Sdiek1_2816 PF02743 Cache domain Sdiek1_2816 PF00672 HAMP domain Sdiek1_2816 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Sdiek1_2819 PF00005 ABC transporter Sdiek1_2820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_2821 PF00440 Bacterial regulatory proteins, tetR family Sdiek1_2821 PF09209 Tetracyclin repressor-like, C-terminal domain Sdiek1_2822 PF00881 Nitroreductase family Sdiek1_2830 PF00005 ABC transporter Sdiek1_2835 PF00933 Glycosyl hydrolase family 3 N terminal domain Sdiek1_2835 PF01915 Glycosyl hydrolase family 3 C-terminal domain Sdiek1_2840 PF13673 Acetyltransferase (GNAT) domain Sdiek1_2841 PF03358 NADPH-dependent FMN reductase Sdiek1_2843 PF00106 short chain dehydrogenase Sdiek1_2844 PF00873 AcrB/AcrD/AcrF family Sdiek1_2845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Sdiek1_2845 PF00529 HlyD membrane-fusion protein of T1SS Sdiek1_2851 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2851 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2851 PF00563 EAL domain Sdiek1_2853 PF00486 Transcriptional regulatory protein, C terminal Sdiek1_2853 PF00072 Response regulator receiver domain Sdiek1_2854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Sdiek1_2854 PF00512 His Kinase A (phospho-acceptor) domain Sdiek1_2854 PF00672 HAMP domain Sdiek1_2855 PF08402 TOBE domain Sdiek1_2855 PF00005 ABC transporter Sdiek1_2856 PF00528 Binding-protein-dependent transport system inner membrane component Sdiek1_2858 PF13416 Bacterial extracellular solute-binding protein Sdiek1_2860 PF01507 Phosphoadenosine phosphosulfate reductase family Sdiek1_2861 PF01507 Phosphoadenosine phosphosulfate reductase family Sdiek1_2862 PF00009 Elongation factor Tu GTP binding domain Sdiek1_2864 PF00899 ThiF family Sdiek1_2866 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Sdiek1_2866 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Sdiek1_2867 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Sdiek1_2867 PF10414 Sirohaem synthase dimerisation region Sdiek1_2867 PF14824 Sirohaem biosynthesis protein central Sdiek1_2868 PF01053 Cys/Met metabolism PLP-dependent enzyme Sdiek1_2874 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2874 PF08448 PAS fold Sdiek1_2876 PF01451 Low molecular weight phosphotyrosine protein phosphatase Sdiek1_2878 PF03741 Integral membrane protein TerC family Sdiek1_2879 PF02621 Menaquinone biosynthesis Sdiek1_2880 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Sdiek1_2880 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Sdiek1_2882 PF03949 Malic enzyme, NAD binding domain Sdiek1_2882 PF01515 Phosphate acetyl/butaryl transferase Sdiek1_2882 PF00390 Malic enzyme, N-terminal domain Sdiek1_2883 PF00749 tRNA synthetases class I (E and Q), catalytic domain Sdiek1_2885 PF00289 Biotin carboxylase, N-terminal domain Sdiek1_2885 PF02785 Biotin carboxylase C-terminal domain Sdiek1_2885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Sdiek1_2886 PF00364 Biotin-requiring enzyme Sdiek1_2887 PF00692 dUTPase Sdiek1_2892 PF17785 PUA-like domain Sdiek1_2892 PF10672 S-adenosylmethionine-dependent methyltransferase Sdiek1_2893 PF12146 Serine aminopeptidase, S33 Sdiek1_2895 PF00669 Bacterial flagellin N-terminal helical region Sdiek1_2896 PF02719 Polysaccharide biosynthesis protein Sdiek1_2897 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Sdiek1_2898 PF02348 Cytidylyltransferase Sdiek1_2900 PF02911 Formyl transferase, C-terminal domain Sdiek1_2900 PF00551 Formyl transferase Sdiek1_2901 PF08666 SAF domain Sdiek1_2901 PF03102 NeuB family Sdiek1_2904 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Sdiek1_2905 PF13302 Acetyltransferase (GNAT) domain Sdiek1_2907 PF01425 Amidase Sdiek1_2910 PF00669 Bacterial flagellin N-terminal helical region Sdiek1_2910 PF07196 Flagellin hook IN motif Sdiek1_2910 PF00669 Bacterial flagellin N-terminal helical region Sdiek1_2910 PF07196 Flagellin hook IN motif Sdiek1_2910 PF00700 Bacterial flagellin C-terminal helical region Sdiek1_2910 PF00700 Bacterial flagellin C-terminal helical region Sdiek1_2911 PF01131 DNA topoisomerase Sdiek1_2911 PF01396 Topoisomerase DNA binding C4 zinc finger Sdiek1_2911 PF01751 Toprim domain Sdiek1_2912 PF04055 Radical SAM superfamily Sdiek1_2912 PF06968 Biotin and Thiamin Synthesis associated domain Sdiek1_2913 PF00285 Citrate synthase, C-terminal domain Sdiek1_2917 PF00113 Enolase, C-terminal TIM barrel domain Sdiek1_2917 PF03952 Enolase, N-terminal domain Sdiek1_2918 PF00154 recA bacterial DNA recombination protein Sdiek1_2919 PF02621 Menaquinone biosynthesis Sdiek1_2920 PF01313 Bacterial export proteins, family 3 Sdiek1_2921 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Sdiek1_2924 PF00814 Glycoprotease family Sdiek1_2926 PF00563 EAL domain Sdiek1_2926 PF00990 Diguanylate cyclase, GGDEF domain Sdiek1_2926 PF03707 Bacterial signalling protein N terminal repeat Sdiek1_2930 PF00149 Calcineurin-like phosphoesterase Sdiek1_2931 PF01235 Sodium:alanine symporter family Sdiek1_2932 PF00860 Permease family Sdiek1_2933 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sdiek1_2933 PF13288 DXP reductoisomerase C-terminal domain Sdiek1_2933 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Sdiek1_2937 PF02595 Glycerate kinase family Sdiek1_2938 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Sdiek1_2938 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Sdiek1_2941 PF13545 Crp-like helix-turn-helix domain Sdiek1_2941 PF00027 Cyclic nucleotide-binding domain Sdiek1_2943 PF00330 Aconitase family (aconitate hydratase) Sdiek1_2944 PF12804 MobA-like NTP transferase domain Sdiek1_2949 PF02253 Phospholipase A1 Sdiek1_2950 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) Sdiek1_2951 PF01967 MoaC family Sdiek1_2952 PF04359 Protein of unknown function (DUF493) Sdiek1_2969 PF01027 Inhibitor of apoptosis-promoting Bax1 Sdiek1_2973 PF13247 4Fe-4S dicluster domain Sdiek1_2974 PF01568 Molydopterin dinucleotide binding domain Sdiek1_2974 PF00384 Molybdopterin oxidoreductase Sdiek1_2974 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_2976 PF03466 LysR substrate binding domain Sdiek1_2976 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Sdiek1_2980 PF13247 4Fe-4S dicluster domain Sdiek1_2980 PF00037 4Fe-4S binding domain Sdiek1_2981 PF00384 Molybdopterin oxidoreductase Sdiek1_2981 PF10518 TAT (twin-arginine translocation) pathway signal sequence Sdiek1_2981 PF01568 Molydopterin dinucleotide binding domain Sdiek1_2981 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Sdiek1_2982 PF13649 Methyltransferase domain Sdiek1_2985 PF00211 Adenylate and Guanylate cyclase catalytic domain Sdiek1_2986 PF01966 HD domain Sdiek1_2987 PF03840 Preprotein translocase SecG subunit Sdiek1_2989 PF01765 Ribosome recycling factor Sdiek1_2990 PF00156 Phosphoribosyl transferase domain Sdiek1_2995 PF04011 LemA family Sdiek1_2998 PF03963 Flagellar hook capping protein - N-terminal region Sdiek1_2999 PF07559 Flagellar basal body protein FlaE Sdiek1_2999 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Sdiek1_2999 PF00460 Flagella basal body rod protein Sdiek1_2999 PF07196 Flagellin hook IN motif Sdiek1_3000 PF07559 Flagellar basal body protein FlaE Sdiek1_3000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Sdiek1_3000 PF07196 Flagellin hook IN motif Sdiek1_3000 PF00460 Flagella basal body rod protein Sdiek1_3001 PF02511 Thymidylate synthase complementing protein Sdiek1_3002 PF02075 Crossover junction endodeoxyribonuclease RuvC