locus-tag class description E3D00_00005 PF00308 Bacterial dnaA protein E3D00_00005 PF11638 DnaA N-terminal domain E3D00_00005 PF08299 Bacterial dnaA protein helix-turn-helix E3D00_00010 PF02767 DNA polymerase III beta subunit, central domain E3D00_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3D00_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3D00_00015 PF02463 RecF/RecN/SMC N terminal domain E3D00_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_00020 PF00204 DNA gyrase B E3D00_00020 PF01751 Toprim domain E3D00_00020 PF00986 DNA gyrase B subunit, carboxyl terminus E3D00_00030 PF12804 MobA-like NTP transferase domain E3D00_00030 PF14602 Hexapeptide repeat of succinyl-transferase E3D00_00030 PF00132 Bacterial transferase hexapeptide (six repeats) E3D00_00035 PF01380 SIS domain E3D00_00040 PF02913 FAD linked oxidases, C-terminal domain E3D00_00040 PF01565 FAD binding domain E3D00_00040 PF13183 4Fe-4S dicluster domain E3D00_00050 PF01266 FAD dependent oxidoreductase E3D00_00060 PF05690 Thiazole biosynthesis protein ThiG E3D00_00065 PF02581 Thiamine monophosphate synthase E3D00_00070 PF00999 Sodium/hydrogen exchanger family E3D00_00075 PF00854 POT family E3D00_00080 PF03099 Biotin/lipoate A/B protein ligase family E3D00_00080 PF12706 Beta-lactamase superfamily domain E3D00_00085 PF01026 TatD related DNase E3D00_00090 PF08264 Anticodon-binding domain of tRNA E3D00_00090 PF09334 tRNA synthetases class I (M) E3D00_00100 PF02223 Thymidylate kinase E3D00_00105 PF00768 D-alanyl-D-alanine carboxypeptidase E3D00_00105 PF07943 Penicillin-binding protein 5, C-terminal domain E3D00_00115 PF13406 Transglycosylase SLT domain E3D00_00135 PF02673 Bacitracin resistance protein BacA E3D00_00140 PF13520 Amino acid permease E3D00_00165 PF17827 PrmC N-terminal domain E3D00_00165 PF13847 Methyltransferase domain E3D00_00175 PF00472 RF-1 domain E3D00_00175 PF03462 PCRF domain E3D00_00180 PF03129 Anticodon binding domain E3D00_00180 PF13393 Histidyl-tRNA synthetase E3D00_00185 PF04551 GcpE protein E3D00_00195 PF03060 Nitronate monooxygenase E3D00_00200 PF00696 Amino acid kinase family E3D00_00200 PF01842 ACT domain E3D00_00200 PF13840 ACT domain E3D00_00215 PF00462 Glutaredoxin E3D00_00230 PF00483 Nucleotidyl transferase E3D00_00250 PF01722 BolA-like protein E3D00_00255 PF00226 DnaJ domain E3D00_00260 PF12556 Cobaltochelatase CobS subunit N terminal E3D00_00260 PF08406 CbbQ/NirQ/NorQ C-terminal E3D00_00260 PF07728 AAA domain (dynein-related subfamily) E3D00_00265 PF11775 Cobalamin biosynthesis protein CobT VWA domain E3D00_00265 PF06213 Cobalamin biosynthesis protein CobT E3D00_00280 PF17757 UvrB interaction domain E3D00_00280 PF02559 CarD-like/TRCF domain E3D00_00280 PF00270 DEAD/DEAH box helicase E3D00_00280 PF00271 Helicase conserved C-terminal domain E3D00_00280 PF03461 TRCF domain E3D00_00285 PF17191 RecG wedge domain E3D00_00285 PF00270 DEAD/DEAH box helicase E3D00_00285 PF00271 Helicase conserved C-terminal domain E3D00_00295 PF00313 'Cold-shock' DNA-binding domain E3D00_00300 PF01668 SmpB protein E3D00_00305 PF00701 Dihydrodipicolinate synthetase family E3D00_00310 PF00800 Prephenate dehydratase E3D00_00315 PF02348 Cytidylyltransferase E3D00_00320 PF00459 Inositol monophosphatase family E3D00_00325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D00_00325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D00_00330 PF13335 Magnesium chelatase, subunit ChlI C-terminal E3D00_00330 PF01078 Magnesium chelatase, subunit ChlI E3D00_00335 PF01053 Cys/Met metabolism PLP-dependent enzyme E3D00_00340 PF00581 Rhodanese-like domain E3D00_00345 PF01594 AI-2E family transporter E3D00_00355 PF13091 PLD-like domain E3D00_00355 PF13396 Phospholipase_D-nuclease N-terminal E3D00_00360 PF04377 Arginine-tRNA-protein transferase, C terminus E3D00_00360 PF04376 Arginine-tRNA-protein transferase, N terminus E3D00_00365 PF03989 DNA gyrase C-terminal domain, beta-propeller E3D00_00365 PF00521 DNA gyrase/topoisomerase IV, subunit A E3D00_00375 PF02565 Recombination protein O C terminal E3D00_00375 PF11967 Recombination protein O N terminal E3D00_00380 PF00889 Elongation factor TS E3D00_00385 PF00318 Ribosomal protein S2 E3D00_00390 PF02811 PHP domain E3D00_00390 PF14579 Helix-hairpin-helix motif E3D00_00390 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3D00_00390 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3D00_00395 PF00005 ABC transporter E3D00_00400 PF12704 MacB-like periplasmic core domain E3D00_00400 PF02687 FtsX-like permease family E3D00_00405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3D00_00405 PF03129 Anticodon binding domain E3D00_00410 PF12706 Beta-lactamase superfamily domain E3D00_00410 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain E3D00_00410 PF17770 Ribonuclease J C-terminal domain E3D00_00415 PF03309 Type III pantothenate kinase E3D00_00420 PF03099 Biotin/lipoate A/B protein ligase family E3D00_00420 PF02237 Biotin protein ligase C terminal domain E3D00_00430 PF00216 Bacterial DNA-binding protein E3D00_00435 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3D00_00435 PF05362 Lon protease (S16) C-terminal proteolytic domain E3D00_00435 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_00440 PF10431 C-terminal, D2-small domain, of ClpB protein E3D00_00440 PF06689 ClpX C4-type zinc finger E3D00_00440 PF07724 AAA domain (Cdc48 subfamily) E3D00_00445 PF00574 Clp protease E3D00_00450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D00_00450 PF05698 Bacterial trigger factor protein (TF) C-terminus E3D00_00450 PF05697 Bacterial trigger factor protein (TF) E3D00_00460 PF01256 Carbohydrate kinase E3D00_00470 PF00270 DEAD/DEAH box helicase E3D00_00470 PF00271 Helicase conserved C-terminal domain E3D00_00475 PF05958 tRNA (Uracil-5-)-methyltransferase E3D00_00480 PF01521 Iron-sulphur cluster biosynthesis E3D00_00485 PF01883 Iron-sulfur cluster assembly protein E3D00_00490 PF00266 Aminotransferase class-V E3D00_00495 PF01458 Uncharacterized protein family (UPF0051) E3D00_00500 PF00005 ABC transporter E3D00_00505 PF01458 Uncharacterized protein family (UPF0051) E3D00_00515 PF04286 Protein of unknown function (DUF445) E3D00_00530 PF00679 Elongation factor G C-terminus E3D00_00530 PF14492 Elongation Factor G, domain II E3D00_00530 PF00009 Elongation factor Tu GTP binding domain E3D00_00530 PF03144 Elongation factor Tu domain 2 E3D00_00530 PF03764 Elongation factor G, domain IV E3D00_00535 PF00830 Ribosomal L28 family E3D00_00540 PF00664 ABC transporter transmembrane region E3D00_00540 PF00005 ABC transporter E3D00_00550 PF01594 AI-2E family transporter E3D00_00565 PF00216 Bacterial DNA-binding protein E3D00_00570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3D00_00570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3D00_00575 PF02504 Fatty acid synthesis protein E3D00_00580 PF01783 Ribosomal L32p protein family E3D00_00595 PF00672 HAMP domain E3D00_00595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_00595 PF00512 His Kinase A (phospho-acceptor) domain E3D00_00600 PF00072 Response regulator receiver domain E3D00_00600 PF00486 Transcriptional regulatory protein, C terminal E3D00_00610 PF01327 Polypeptide deformylase E3D00_00615 PF01165 Ribosomal protein S21 E3D00_00620 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3D00_00620 PF00326 Prolyl oligopeptidase family E3D00_00625 PF01618 MotA/TolQ/ExbB proton channel family E3D00_00630 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3D00_00630 PF00691 OmpA family E3D00_00640 PF00535 Glycosyl transferase family 2 E3D00_00645 PF01037 Lrp/AsnC ligand binding domain E3D00_00650 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_00655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D00_00660 PF00216 Bacterial DNA-binding protein E3D00_00665 PF01343 Peptidase family S49 E3D00_00670 PF05443 ROS/MUCR transcriptional regulator protein E3D00_00675 PF04632 Fusaric acid resistance protein family E3D00_00720 PF00829 Ribosomal prokaryotic L21 protein E3D00_00725 PF01016 Ribosomal L27 protein E3D00_00730 PF01018 GTP1/OBG E3D00_00730 PF01926 50S ribosome-binding GTPase E3D00_00735 PF01472 PUA domain E3D00_00735 PF00696 Amino acid kinase family E3D00_00745 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) E3D00_00750 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain E3D00_00750 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain E3D00_00760 PF07859 alpha/beta hydrolase fold E3D00_00770 PF02381 MraZ protein, putative antitoxin-like E3D00_00775 PF01795 MraW methylase family E3D00_00785 PF03717 Penicillin-binding Protein dimerisation domain E3D00_00785 PF00905 Penicillin binding protein transpeptidase domain E3D00_00790 PF08245 Mur ligase middle domain E3D00_00790 PF02875 Mur ligase family, glutamate ligase domain E3D00_00790 PF01225 Mur ligase family, catalytic domain E3D00_00795 PF08245 Mur ligase middle domain E3D00_00795 PF01225 Mur ligase family, catalytic domain E3D00_00795 PF02875 Mur ligase family, glutamate ligase domain E3D00_00800 PF00953 Glycosyl transferase family 4 E3D00_00805 PF08245 Mur ligase middle domain E3D00_00805 PF02875 Mur ligase family, glutamate ligase domain E3D00_00810 PF01098 Cell cycle protein E3D00_00815 PF03033 Glycosyltransferase family 28 N-terminal domain E3D00_00815 PF04101 Glycosyltransferase family 28 C-terminal domain E3D00_00820 PF08245 Mur ligase middle domain E3D00_00820 PF02875 Mur ligase family, glutamate ligase domain E3D00_00820 PF01225 Mur ligase family, catalytic domain E3D00_00825 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3D00_00825 PF01565 FAD binding domain E3D00_00830 PF07478 D-ala D-ala ligase C-terminus E3D00_00830 PF01820 D-ala D-ala ligase N-terminus E3D00_00835 PF03799 Cell division protein FtsQ E3D00_00835 PF08478 POTRA domain, FtsQ-type E3D00_00840 PF02491 SHS2 domain inserted in FTSA E3D00_00845 PF00091 Tubulin/FtsZ family, GTPase domain E3D00_00845 PF12327 FtsZ family, C-terminal domain E3D00_00850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3D00_00855 PF13525 Outer membrane lipoprotein E3D00_00860 PF02463 RecF/RecN/SMC N terminal domain E3D00_00865 PF00533 BRCA1 C Terminus (BRCT) domain E3D00_00865 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3D00_00865 PF12826 Helix-hairpin-helix motif E3D00_00865 PF03120 NAD-dependent DNA ligase OB-fold domain E3D00_00865 PF01653 NAD-dependent DNA ligase adenylation domain E3D00_00870 PF00571 CBS domain E3D00_00870 PF03471 Transporter associated domain E3D00_00870 PF01595 Cyclin M transmembrane N-terminal domain E3D00_00875 PF00857 Isochorismatase family E3D00_00890 PF00156 Phosphoribosyl transferase domain E3D00_00905 PF00075 RNase H E3D00_00910 PF01636 Phosphotransferase enzyme family E3D00_00915 PF02401 LytB protein E3D00_00925 PF03169 OPT oligopeptide transporter protein E3D00_00970 PF00180 Isocitrate/isopropylmalate dehydrogenase E3D00_00975 PF00694 Aconitase C-terminal domain E3D00_00980 PF00330 Aconitase family (aconitate hydratase) E3D00_00985 PF01245 Ribosomal protein L19 E3D00_00990 PF01746 tRNA (Guanine-1)-methyltransferase E3D00_00995 PF01782 RimM N-terminal domain E3D00_01000 PF00886 Ribosomal protein S16 E3D00_01005 PF02881 SRP54-type protein, helical bundle domain E3D00_01005 PF02978 Signal peptide binding domain E3D00_01005 PF00448 SRP54-type protein, GTPase domain E3D00_01020 PF00295 Glycosyl hydrolases family 28 E3D00_01025 PF00072 Response regulator receiver domain E3D00_01025 PF00486 Transcriptional regulatory protein, C terminal E3D00_01035 PF03793 PASTA domain E3D00_01035 PF00069 Protein kinase domain E3D00_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_01050 PF00512 His Kinase A (phospho-acceptor) domain E3D00_01065 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3D00_01065 PF00691 OmpA family E3D00_01080 PF04717 Type VI secretion system, phage-baseplate injector E3D00_01090 PF10431 C-terminal, D2-small domain, of ClpB protein E3D00_01090 PF17871 AAA lid domain E3D00_01090 PF07724 AAA domain (Cdc48 subfamily) E3D00_01090 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_01140 PF00271 Helicase conserved C-terminal domain E3D00_01140 PF00270 DEAD/DEAH box helicase E3D00_01145 PF00561 alpha/beta hydrolase fold E3D00_01145 PF07021 Methionine biosynthesis protein MetW E3D00_01150 PF00561 alpha/beta hydrolase fold E3D00_01155 PF14307 Glycosyltransferase WbsX E3D00_01155 PF05045 Rhamnan synthesis protein F E3D00_01205 PF13419 Haloacid dehalogenase-like hydrolase E3D00_01210 PF03358 NADPH-dependent FMN reductase E3D00_01220 PF00873 AcrB/AcrD/AcrF family E3D00_01275 PF13277 YmdB-like protein E3D00_01280 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3D00_01320 PF00152 tRNA synthetases class II (D, K and N) E3D00_01325 PF12544 Lysine-2,3-aminomutase E3D00_01325 PF04055 Radical SAM superfamily E3D00_01330 PF09285 Elongation factor P, C-terminal E3D00_01330 PF01132 Elongation factor P (EF-P) OB domain E3D00_01330 PF08207 Elongation factor P (EF-P) KOW-like domain E3D00_01335 PF00459 Inositol monophosphatase family E3D00_01355 PF00679 Elongation factor G C-terminus E3D00_01355 PF00009 Elongation factor Tu GTP binding domain E3D00_01355 PF06421 GTP-binding protein LepA C-terminus E3D00_01355 PF03144 Elongation factor Tu domain 2 E3D00_01375 PF00860 Permease family E3D00_01385 PF01206 Sulfurtransferase TusA E3D00_01390 PF02609 Exonuclease VII small subunit E3D00_01395 PF00348 Polyprenyl synthetase E3D00_01400 PF02779 Transketolase, pyrimidine binding domain E3D00_01400 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3D00_01400 PF02780 Transketolase, C-terminal domain E3D00_01405 PF01728 FtsJ-like methyltransferase E3D00_01405 PF01479 S4 domain E3D00_01415 PF04055 Radical SAM superfamily E3D00_01420 PF00764 Arginosuccinate synthase E3D00_01425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3D00_01425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D00_01430 PF00265 Thymidine kinase E3D00_01440 PF00579 tRNA synthetases class I (W and Y) E3D00_01445 PF02684 Lipid-A-disaccharide synthetase E3D00_01450 PF01588 Putative tRNA binding domain E3D00_01450 PF03484 tRNA synthetase B5 domain E3D00_01450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3D00_01450 PF03147 Ferredoxin-fold anticodon binding domain E3D00_01450 PF03483 B3/4 domain E3D00_01455 PF01409 tRNA synthetases class II core domain (F) E3D00_01455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3D00_01460 PF00453 Ribosomal protein L20 E3D00_01465 PF01632 Ribosomal protein L35 E3D00_01470 PF01011 PQQ enzyme repeat E3D00_01480 PF01467 Cytidylyltransferase-like E3D00_01480 PF00294 pfkB family carbohydrate kinase E3D00_01485 PF08645 Polynucleotide kinase 3 phosphatase E3D00_01495 PF02657 Fe-S metabolism associated domain E3D00_01500 PF07724 AAA domain (Cdc48 subfamily) E3D00_01500 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_01500 PF10431 C-terminal, D2-small domain, of ClpB protein E3D00_01505 PF00227 Proteasome subunit E3D00_01510 PF08448 PAS fold E3D00_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_01510 PF00072 Response regulator receiver domain E3D00_01510 PF00512 His Kinase A (phospho-acceptor) domain E3D00_01510 PF13188 PAS domain E3D00_01515 PF13188 PAS domain E3D00_01515 PF00072 Response regulator receiver domain E3D00_01515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_01515 PF08448 PAS fold E3D00_01515 PF00512 His Kinase A (phospho-acceptor) domain E3D00_01530 PF00005 ABC transporter E3D00_01545 PF01553 Acyltransferase E3D00_01555 PF01654 Cytochrome bd terminal oxidase subunit I E3D00_01560 PF02322 Cytochrome bd terminal oxidase subunit II E3D00_01570 PF00753 Metallo-beta-lactamase superfamily E3D00_01570 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3D00_01580 PF02666 Phosphatidylserine decarboxylase E3D00_01585 PF01066 CDP-alcohol phosphatidyltransferase E3D00_01590 PF00480 ROK family E3D00_01595 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3D00_01625 PF00248 Aldo/keto reductase family E3D00_01635 PF00883 Cytosol aminopeptidase family, catalytic domain E3D00_01635 PF02789 Cytosol aminopeptidase family, N-terminal domain E3D00_01640 PF00459 Inositol monophosphatase family E3D00_01645 PF03481 Putative GTP-binding controlling metal-binding E3D00_01645 PF01300 Telomere recombination E3D00_01665 PF04453 LPS transport system D E3D00_01665 PF03968 OstA-like protein E3D00_01670 PF09312 SurA N-terminal domain E3D00_01670 PF00639 PPIC-type PPIASE domain E3D00_01675 PF00398 Ribosomal RNA adenine dimethylase E3D00_01680 PF03352 Methyladenine glycosylase E3D00_01680 PF13302 Acetyltransferase (GNAT) domain E3D00_01680 PF00117 Glutamine amidotransferase class-I E3D00_01680 PF13673 Acetyltransferase (GNAT) domain E3D00_01680 PF00958 GMP synthase C terminal domain E3D00_01690 PF03948 Ribosomal protein L9, C-terminal domain E3D00_01690 PF01281 Ribosomal protein L9, N-terminal domain E3D00_01695 PF01084 Ribosomal protein S18 E3D00_01700 PF01250 Ribosomal protein S6 E3D00_01705 PF00583 Acetyltransferase (GNAT) family E3D00_01710 PF00140 Sigma-70 factor, region 1.2 E3D00_01710 PF04546 Sigma-70, non-essential region E3D00_01710 PF04545 Sigma-70, region 4 E3D00_01710 PF04542 Sigma-70 region 2 E3D00_01710 PF04539 Sigma-70 region 3 E3D00_01710 PF03979 Sigma-70 factor, region 1.1 E3D00_01715 PF01807 CHC2 zinc finger E3D00_01715 PF08275 DNA primase catalytic core, N-terminal domain E3D00_01715 PF13662 Toprim domain E3D00_01715 PF10410 DnaB-helicase binding domain of primase E3D00_01715 PF08278 DNA primase DnaG DnaB-binding E3D00_01730 PF00117 Glutamine amidotransferase class-I E3D00_01730 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3D00_01735 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3D00_01735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3D00_01735 PF02142 MGS-like domain E3D00_01740 PF13443 Cro/C1-type HTH DNA-binding domain E3D00_01745 PF03449 Transcription elongation factor, N-terminal E3D00_01745 PF01272 Transcription elongation factor, GreA/GreB, C-term E3D00_01750 PF00291 Pyridoxal-phosphate dependent enzyme E3D00_01750 PF13291 ACT domain E3D00_01765 PF01641 SelR domain E3D00_01775 PF13180 PDZ domain E3D00_01775 PF03572 Peptidase family S41 E3D00_01785 PF00293 NUDIX domain E3D00_01790 PF00664 ABC transporter transmembrane region E3D00_01790 PF00005 ABC transporter E3D00_01795 PF13735 tRNA nucleotidyltransferase domain 2 putative E3D00_01795 PF12627 Probable RNA and SrmB- binding site of polymerase A E3D00_01795 PF01743 Poly A polymerase head domain E3D00_01805 PF07726 ATPase family associated with various cellular activities (AAA) E3D00_01805 PF17863 AAA lid domain E3D00_01830 PF01555 DNA methylase E3D00_01830 PF18755 Restriction Enzyme Adenine Methylase Associated E3D00_01850 PF13533 Biotin-lipoyl like E3D00_01855 PF00873 AcrB/AcrD/AcrF family E3D00_01860 PF00873 AcrB/AcrD/AcrF family E3D00_01865 PF02321 Outer membrane efflux protein E3D00_01875 PF07690 Major Facilitator Superfamily E3D00_01880 PF01196 Ribosomal protein L17 E3D00_01885 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3D00_01885 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3D00_01885 PF01000 RNA polymerase Rpb3/RpoA insert domain E3D00_01890 PF00411 Ribosomal protein S11 E3D00_01895 PF00416 Ribosomal protein S13/S18 E3D00_01900 PF05191 Adenylate kinase, active site lid E3D00_01905 PF00344 SecY translocase E3D00_01910 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3D00_01915 PF00327 Ribosomal protein L30p/L7e E3D00_01920 PF00333 Ribosomal protein S5, N-terminal domain E3D00_01920 PF03719 Ribosomal protein S5, C-terminal domain E3D00_01925 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3D00_01930 PF00347 Ribosomal protein L6 E3D00_01935 PF00410 Ribosomal protein S8 E3D00_01940 PF00253 Ribosomal protein S14p/S29e E3D00_01945 PF00281 Ribosomal protein L5 E3D00_01945 PF00673 ribosomal L5P family C-terminus E3D00_01950 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3D00_01955 PF00238 Ribosomal protein L14p/L23e E3D00_01960 PF00366 Ribosomal protein S17 E3D00_01965 PF00831 Ribosomal L29 protein E3D00_01970 PF00252 Ribosomal protein L16p/L10e E3D00_01975 PF07650 KH domain E3D00_01975 PF00189 Ribosomal protein S3, C-terminal domain E3D00_01980 PF00237 Ribosomal protein L22p/L17e E3D00_01985 PF00203 Ribosomal protein S19 E3D00_01990 PF03947 Ribosomal Proteins L2, C-terminal domain E3D00_01990 PF00181 Ribosomal Proteins L2, RNA binding domain E3D00_01995 PF00276 Ribosomal protein L23 E3D00_02000 PF00573 Ribosomal protein L4/L1 family E3D00_02005 PF00297 Ribosomal protein L3 E3D00_02010 PF00338 Ribosomal protein S10p/S20e E3D00_02015 PF00009 Elongation factor Tu GTP binding domain E3D00_02015 PF03144 Elongation factor Tu domain 2 E3D00_02015 PF03143 Elongation factor Tu C-terminal domain E3D00_02020 PF00177 Ribosomal protein S7p/S5e E3D00_02025 PF00164 Ribosomal protein S12/S23 E3D00_02030 PF00623 RNA polymerase Rpb1, domain 2 E3D00_02030 PF05000 RNA polymerase Rpb1, domain 4 E3D00_02030 PF04998 RNA polymerase Rpb1, domain 5 E3D00_02030 PF04997 RNA polymerase Rpb1, domain 1 E3D00_02030 PF04983 RNA polymerase Rpb1, domain 3 E3D00_02035 PF04563 RNA polymerase beta subunit E3D00_02035 PF00562 RNA polymerase Rpb2, domain 6 E3D00_02035 PF04560 RNA polymerase Rpb2, domain 7 E3D00_02035 PF04565 RNA polymerase Rpb2, domain 3 E3D00_02035 PF04561 RNA polymerase Rpb2, domain 2 E3D00_02035 PF10385 RNA polymerase beta subunit external 1 domain E3D00_02040 PF00542 Ribosomal protein L7/L12 C-terminal domain E3D00_02040 PF16320 Ribosomal protein L7/L12 dimerisation domain E3D00_02045 PF00466 Ribosomal protein L10 E3D00_02050 PF00687 Ribosomal protein L1p/L10e family E3D00_02055 PF00298 Ribosomal protein L11, RNA binding domain E3D00_02055 PF03946 Ribosomal protein L11, N-terminal domain E3D00_02060 PF02321 Outer membrane efflux protein E3D00_02070 PF00873 AcrB/AcrD/AcrF family E3D00_02075 PF00672 HAMP domain E3D00_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_02075 PF00512 His Kinase A (phospho-acceptor) domain E3D00_02080 PF00486 Transcriptional regulatory protein, C terminal E3D00_02080 PF00072 Response regulator receiver domain E3D00_02085 PF02646 RmuC family E3D00_02100 PF13417 Glutathione S-transferase, N-terminal domain E3D00_02100 PF00043 Glutathione S-transferase, C-terminal domain E3D00_02105 PF03775 Septum formation inhibitor MinC, C-terminal domain E3D00_02105 PF05209 Septum formation inhibitor MinC, N-terminal domain E3D00_02110 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3D00_02115 PF03776 Septum formation topological specificity factor MinE E3D00_02125 PF00593 TonB dependent receptor E3D00_02125 PF07715 TonB-dependent Receptor Plug Domain E3D00_02140 PF13603 Leucyl-tRNA synthetase, Domain 2 E3D00_02140 PF00133 tRNA synthetases class I (I, L, M and V) E3D00_02140 PF08264 Anticodon-binding domain of tRNA E3D00_02145 PF12100 Domain of unknown function (DUF3576) E3D00_02200 PF02637 GatB domain E3D00_02200 PF02934 GatB/GatE catalytic domain E3D00_02205 PF01425 Amidase E3D00_02210 PF02686 Glu-tRNAGln amidotransferase C subunit E3D00_02215 PF03652 Holliday junction resolvase E3D00_02225 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3D00_02225 PF00588 SpoU rRNA Methylase family E3D00_02235 PF00654 Voltage gated chloride channel E3D00_02240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D00_02240 PF00034 Cytochrome c E3D00_02245 PF01011 PQQ enzyme repeat E3D00_02245 PF13360 PQQ-like domain E3D00_02245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D00_02250 PF13847 Methyltransferase domain E3D00_02255 PF03358 NADPH-dependent FMN reductase E3D00_02260 PF00043 Glutathione S-transferase, C-terminal domain E3D00_02260 PF02798 Glutathione S-transferase, N-terminal domain E3D00_02265 PF00162 Phosphoglycerate kinase E3D00_02270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3D00_02270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3D00_02285 PF13811 Domain of unknown function (DUF4186) E3D00_02290 PF00324 Amino acid permease E3D00_02300 PF03960 ArsC family E3D00_02305 PF07690 Major Facilitator Superfamily E3D00_02310 PF01029 NusB family E3D00_02310 PF01189 16S rRNA methyltransferase RsmB/F E3D00_02315 PF01168 Alanine racemase, N-terminal domain E3D00_02320 PF02705 K+ potassium transporter E3D00_02325 PF06969 HemN C-terminal domain E3D00_02325 PF04055 Radical SAM superfamily E3D00_02330 PF01156 Inosine-uridine preferring nucleoside hydrolase E3D00_02345 PF00013 KH domain E3D00_02345 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3D00_02345 PF00575 S1 RNA binding domain E3D00_02345 PF01138 3' exoribonuclease family, domain 1 E3D00_02345 PF03725 3' exoribonuclease family, domain 2 E3D00_02350 PF00312 Ribosomal protein S15 E3D00_02355 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3D00_02355 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3D00_02360 PF02033 Ribosome-binding factor A E3D00_02365 PF00009 Elongation factor Tu GTP binding domain E3D00_02365 PF11987 Translation-initiation factor 2 E3D00_02365 PF08364 Bacterial translation initiation factor IF-2 associated region E3D00_02365 PF04760 Translation initiation factor IF-2, N-terminal region E3D00_02375 PF08529 NusA N-terminal domain E3D00_02375 PF13184 NusA-like KH domain E3D00_02375 PF00575 S1 RNA binding domain E3D00_02380 PF02576 RimP N-terminal domain E3D00_02380 PF17384 RimP C-terminal SH3 domain E3D00_02390 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_02390 PF07724 AAA domain (Cdc48 subfamily) E3D00_02390 PF17871 AAA lid domain E3D00_02390 PF02861 Clp amino terminal domain, pathogenicity island component E3D00_02390 PF10431 C-terminal, D2-small domain, of ClpB protein E3D00_02400 PF00528 Binding-protein-dependent transport system inner membrane component E3D00_02405 PF00005 ABC transporter E3D00_02410 PF00005 ABC transporter E3D00_02415 PF03379 CcmB protein E3D00_02420 PF09335 SNARE associated Golgi protein E3D00_02425 PF01464 Transglycosylase SLT domain E3D00_02440 PF00288 GHMP kinases N terminal domain E3D00_02440 PF08544 GHMP kinases C terminal E3D00_02455 PF01070 FMN-dependent dehydrogenase E3D00_02460 PF01227 GTP cyclohydrolase I E3D00_02470 PF06508 Queuosine biosynthesis protein QueC E3D00_02480 PF01061 ABC-2 type transporter E3D00_02485 PF00005 ABC transporter E3D00_02490 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3D00_02495 PF00809 Pterin binding enzyme E3D00_02510 PF00813 FliP family E3D00_02520 PF00460 Flagella basal body rod protein E3D00_02525 PF00460 Flagella basal body rod protein E3D00_02525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D00_02530 PF02049 Flagellar hook-basal body complex protein FliE E3D00_02535 PF01313 Bacterial export proteins, family 3 E3D00_02545 PF01312 FlhB HrpN YscU SpaS Family E3D00_02550 PF00593 TonB dependent receptor E3D00_02550 PF07715 TonB-dependent Receptor Plug Domain E3D00_02555 PF00154 recA bacterial DNA recombination protein E3D00_02565 PF00574 Clp protease E3D00_02575 PF00155 Aminotransferase class I and II E3D00_02580 PF00742 Homoserine dehydrogenase E3D00_02580 PF01842 ACT domain E3D00_02580 PF03447 Homoserine dehydrogenase, NAD binding domain E3D00_02585 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E3D00_02590 PF02272 DHHA1 domain E3D00_02590 PF17768 RecJ OB domain E3D00_02590 PF10141 Single-strand DNA-specific exonuclease, C terminal domain E3D00_02590 PF01368 DHH family E3D00_02620 PF00561 alpha/beta hydrolase fold E3D00_02625 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D00_02625 PF00205 Thiamine pyrophosphate enzyme, central domain E3D00_02625 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3D00_02630 PF03547 Membrane transport protein E3D00_02640 PF00248 Aldo/keto reductase family E3D00_02645 PF13439 Glycosyltransferase Family 4 E3D00_02650 PF00313 'Cold-shock' DNA-binding domain E3D00_02655 PF01008 Initiation factor 2 subunit family E3D00_02670 PF00581 Rhodanese-like domain E3D00_02675 PF00571 CBS domain E3D00_02675 PF00291 Pyridoxal-phosphate dependent enzyme E3D00_02680 PF00072 Response regulator receiver domain E3D00_02680 PF00486 Transcriptional regulatory protein, C terminal E3D00_02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_02685 PF00672 HAMP domain E3D00_02685 PF00512 His Kinase A (phospho-acceptor) domain E3D00_02690 PF00127 Copper binding proteins, plastocyanin/azurin family E3D00_02695 PF00141 Peroxidase E3D00_02710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3D00_02710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3D00_02710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3D00_02710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3D00_02715 PF07715 TonB-dependent Receptor Plug Domain E3D00_02715 PF00593 TonB dependent receptor E3D00_02720 PF18331 PKHD-type hydroxylase C-terminal domain E3D00_02720 PF13640 2OG-Fe(II) oxygenase superfamily E3D00_02730 PF00440 Bacterial regulatory proteins, tetR family E3D00_02730 PF16859 Tetracyclin repressor-like, C-terminal domain E3D00_02735 PF00753 Metallo-beta-lactamase superfamily E3D00_02740 PF00356 Bacterial regulatory proteins, lacI family E3D00_02750 PF02838 Glycosyl hydrolase family 20, domain 2 E3D00_02750 PF00728 Glycosyl hydrolase family 20, catalytic domain E3D00_02750 PF07691 PA14 domain E3D00_02760 PF00005 ABC transporter E3D00_02770 PF00034 Cytochrome c E3D00_02770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D00_02770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase E3D00_02775 PF01799 [2Fe-2S] binding domain E3D00_02775 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D00_02780 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase E3D00_02790 PF00999 Sodium/hydrogen exchanger family E3D00_02800 PF05193 Peptidase M16 inactive domain E3D00_02800 PF00675 Insulinase (Peptidase family M16) E3D00_02820 PF00575 S1 RNA binding domain E3D00_02825 PF02224 Cytidylate kinase E3D00_02830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3D00_02850 PF02132 RecR protein E3D00_02850 PF13662 Toprim domain E3D00_02855 PF02575 YbaB/EbfC DNA-binding family E3D00_02860 PF12170 DNA polymerase III tau subunit V interacting with alpha E3D00_02860 PF12169 DNA polymerase III subunits gamma and tau domain III E3D00_02860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3D00_02875 PF00557 Metallopeptidase family M24 E3D00_02885 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3D00_02890 PF17871 AAA lid domain E3D00_02890 PF10431 C-terminal, D2-small domain, of ClpB protein E3D00_02890 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_02890 PF07724 AAA domain (Cdc48 subfamily) E3D00_02890 PF02861 Clp amino terminal domain, pathogenicity island component E3D00_02900 PF14552 Tautomerase enzyme E3D00_02905 PF00202 Aminotransferase class-III E3D00_02910 PF00155 Aminotransferase class I and II E3D00_02910 PF00392 Bacterial regulatory proteins, gntR family E3D00_02935 PF07690 Major Facilitator Superfamily E3D00_02945 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3D00_02950 PF02119 Flagellar P-ring protein E3D00_02965 PF00571 CBS domain E3D00_02965 PF03471 Transporter associated domain E3D00_02965 PF01595 Cyclin M transmembrane N-terminal domain E3D00_02970 PF06463 Molybdenum Cofactor Synthesis C E3D00_02970 PF04055 Radical SAM superfamily E3D00_02985 PF04055 Radical SAM superfamily E3D00_02985 PF06969 HemN C-terminal domain E3D00_02990 PF04794 YdjC-like protein E3D00_02995 PF00294 pfkB family carbohydrate kinase E3D00_03005 PF00873 AcrB/AcrD/AcrF family E3D00_03015 PF02321 Outer membrane efflux protein E3D00_03025 PF00570 HRDC domain E3D00_03025 PF01612 3'-5' exonuclease E3D00_03030 PF00085 Thioredoxin E3D00_03035 PF13361 UvrD-like helicase C-terminal domain E3D00_03035 PF00580 UvrD/REP helicase N-terminal domain E3D00_03035 PF12705 PD-(D/E)XK nuclease superfamily E3D00_03045 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3D00_03060 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_03065 PF01266 FAD dependent oxidoreductase E3D00_03070 PF00107 Zinc-binding dehydrogenase E3D00_03070 PF08240 Alcohol dehydrogenase GroES-like domain E3D00_03075 PF07885 Ion channel E3D00_03075 PF17655 Inward rectifier potassium channel C-terminal domain E3D00_03090 PF14489 QueF-like protein E3D00_03095 PF02522 Aminoglycoside 3-N-acetyltransferase E3D00_03120 PF01613 Flavin reductase like domain E3D00_03125 PF00248 Aldo/keto reductase family E3D00_03150 PF00924 Mechanosensitive ion channel E3D00_03160 PF07715 TonB-dependent Receptor Plug Domain E3D00_03160 PF00593 TonB dependent receptor E3D00_03175 PF18324 Hypothetical protein TT1725 E3D00_03175 PF00180 Isocitrate/isopropylmalate dehydrogenase E3D00_03180 PF00330 Aconitase family (aconitate hydratase) E3D00_03180 PF00694 Aconitase C-terminal domain E3D00_03185 PF13192 Thioredoxin domain E3D00_03185 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_03190 PF00578 AhpC/TSA family E3D00_03190 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3D00_03195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D00_03195 PF00005 ABC transporter E3D00_03200 PF00005 ABC transporter E3D00_03200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D00_03205 PF00528 Binding-protein-dependent transport system inner membrane component E3D00_03210 PF00528 Binding-protein-dependent transport system inner membrane component E3D00_03210 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D00_03220 PF00291 Pyridoxal-phosphate dependent enzyme E3D00_03225 PF00403 Heavy-metal-associated domain E3D00_03230 PF07732 Multicopper oxidase E3D00_03230 PF07731 Multicopper oxidase E3D00_03230 PF00394 Multicopper oxidase E3D00_03235 PF05275 Copper resistance protein B precursor (CopB) E3D00_03245 PF07664 Ferrous iron transport protein B C terminus E3D00_03245 PF02421 Ferrous iron transport protein B E3D00_03245 PF07670 Nucleoside recognition E3D00_03255 PF13091 PLD-like domain E3D00_03255 PF13396 Phospholipase_D-nuclease N-terminal E3D00_03290 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3D00_03295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D00_03295 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3D00_03300 PF00231 ATP synthase E3D00_03305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D00_03305 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3D00_03305 PF00306 ATP synthase alpha/beta chain, C terminal domain E3D00_03310 PF00213 ATP synthase delta (OSCP) subunit E3D00_03325 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3D00_03330 PF02357 Transcription termination factor nusG E3D00_03330 PF00467 KOW motif E3D00_03340 PF02470 MlaD protein E3D00_03345 PF04403 Paraquat-inducible protein A E3D00_03355 PF01979 Amidohydrolase family E3D00_03360 PF04226 Transglycosylase associated protein E3D00_03365 PF08240 Alcohol dehydrogenase GroES-like domain E3D00_03365 PF00107 Zinc-binding dehydrogenase E3D00_03375 PF02107 Flagellar L-ring protein E3D00_03385 PF02472 Biopolymer transport protein ExbD/TolR E3D00_03390 PF02472 Biopolymer transport protein ExbD/TolR E3D00_03395 PF01618 MotA/TolQ/ExbB proton channel family E3D00_03410 PF00905 Penicillin binding protein transpeptidase domain E3D00_03410 PF17092 Penicillin-binding protein OB-like domain E3D00_03410 PF00912 Transglycosylase E3D00_03415 PF01628 HrcA protein C terminal domain E3D00_03420 PF01725 Ham1 family E3D00_03425 PF00924 Mechanosensitive ion channel E3D00_03435 PF00005 ABC transporter E3D00_03435 PF00664 ABC transporter transmembrane region E3D00_03435 PF03412 Peptidase C39 family E3D00_03450 PF01047 MarR family E3D00_03455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D00_03460 PF00664 ABC transporter transmembrane region E3D00_03460 PF00005 ABC transporter E3D00_03465 PF00730 HhH-GPD superfamily base excision DNA repair protein E3D00_03465 PF00633 Helix-hairpin-helix motif E3D00_03465 PF10576 Iron-sulfur binding domain of endonuclease III E3D00_03470 PF00933 Glycosyl hydrolase family 3 N terminal domain E3D00_03470 PF01915 Glycosyl hydrolase family 3 C-terminal domain E3D00_03470 PF14310 Fibronectin type III-like domain E3D00_03480 PF00753 Metallo-beta-lactamase superfamily E3D00_03480 PF13567 Domain of unknown function (DUF4131) E3D00_03480 PF03772 Competence protein E3D00_03495 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3D00_03500 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3D00_03500 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3D00_03505 PF01979 Amidohydrolase family E3D00_03510 PF02660 Glycerol-3-phosphate acyltransferase E3D00_03515 PF02481 DNA recombination-mediator protein A E3D00_03515 PF17782 DprA winged helix domain E3D00_03520 PF01396 Topoisomerase DNA binding C4 zinc finger E3D00_03520 PF13368 Topoisomerase C-terminal repeat E3D00_03520 PF01751 Toprim domain E3D00_03520 PF01131 DNA topoisomerase E3D00_03525 PF03572 Peptidase family S41 E3D00_03525 PF13180 PDZ domain E3D00_03535 PF00691 OmpA family E3D00_03550 PF00204 DNA gyrase B E3D00_03550 PF01751 Toprim domain E3D00_03550 PF00986 DNA gyrase B subunit, carboxyl terminus E3D00_03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_03560 PF00324 Amino acid permease E3D00_03565 PF02668 Taurine catabolism dioxygenase TauD, TfdA family E3D00_03585 PF00296 Luciferase-like monooxygenase E3D00_03590 PF08676 MutL C terminal dimerisation domain E3D00_03590 PF01119 DNA mismatch repair protein, C-terminal domain E3D00_03600 PF01252 Signal peptidase (SPase) II E3D00_03605 PF08264 Anticodon-binding domain of tRNA E3D00_03605 PF00133 tRNA synthetases class I (I, L, M and V) E3D00_03605 PF06827 Zinc finger found in FPG and IleRS E3D00_03620 PF01687 Riboflavin kinase E3D00_03620 PF06574 FAD synthetase E3D00_03630 PF03079 ARD/ARD' family E3D00_03635 PF00596 Class II Aldolase and Adducin N-terminal domain E3D00_03640 PF02416 mttA/Hcf106 family E3D00_03645 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3D00_03645 PF01488 Shikimate / quinate 5-dehydrogenase E3D00_03645 PF08501 Shikimate dehydrogenase substrate binding domain E3D00_03655 PF03928 Haem-degrading E3D00_03660 PF05199 GMC oxidoreductase E3D00_03660 PF00732 GMC oxidoreductase E3D00_03665 PF00034 Cytochrome c E3D00_03665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D00_03670 PF12318 Membrane bound FAD containing D-sorbitol dehydrogenase E3D00_03680 PF02631 RecX family E3D00_03685 PF00144 Beta-lactamase E3D00_03685 PF07930 D-aminopeptidase, domain B E3D00_03690 PF00202 Aminotransferase class-III E3D00_03695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3D00_03695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3D00_03700 PF01430 Hsp33 protein E3D00_03715 PF13618 Gluconate 2-dehydrogenase subunit 3 E3D00_03720 PF00732 GMC oxidoreductase E3D00_03720 PF05199 GMC oxidoreductase E3D00_03725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D00_03725 PF00034 Cytochrome c E3D00_03850 PF00772 DnaB-like helicase N terminal domain E3D00_03850 PF03796 DnaB-like helicase C terminal domain E3D00_03855 PF08245 Mur ligase middle domain E3D00_03855 PF02875 Mur ligase family, glutamate ligase domain E3D00_03860 PF01039 Carboxyl transferase domain E3D00_03860 PF17848 Acetyl-coA carboxylase zinc finger domain E3D00_03870 PF00290 Tryptophan synthase alpha chain E3D00_03875 PF00291 Pyridoxal-phosphate dependent enzyme E3D00_03880 PF01544 CorA-like Mg2+ transporter protein E3D00_03890 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3D00_03890 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3D00_03900 PF02082 Transcriptional regulator E3D00_03905 PF01168 Alanine racemase, N-terminal domain E3D00_03905 PF00842 Alanine racemase, C-terminal domain E3D00_03915 PF00210 Ferritin-like domain E3D00_03925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D00_03925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D00_03935 PF07690 Major Facilitator Superfamily E3D00_03935 PF00083 Sugar (and other) transporter E3D00_03940 PF00436 Single-strand binding protein family E3D00_03945 PF17755 UvrA DNA-binding domain E3D00_03945 PF00005 ABC transporter E3D00_03945 PF17760 UvrA interaction domain E3D00_03950 PF00107 Zinc-binding dehydrogenase E3D00_03950 PF08240 Alcohol dehydrogenase GroES-like domain E3D00_03960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3D00_03970 PF11412 Disulphide bond corrector protein DsbC E3D00_03970 PF02683 Cytochrome C biogenesis protein transmembrane region E3D00_03995 PF07690 Major Facilitator Superfamily E3D00_04000 PF12849 PBP superfamily domain E3D00_04010 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3D00_04010 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3D00_04010 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3D00_04015 PF00083 Sugar (and other) transporter E3D00_04020 PF00009 Elongation factor Tu GTP binding domain E3D00_04030 PF01507 Phosphoadenosine phosphosulfate reductase family E3D00_04040 PF02405 Permease MlaE E3D00_04045 PF00005 ABC transporter E3D00_04080 PF01205 Uncharacterized protein family UPF0029 E3D00_04110 PF00873 AcrB/AcrD/AcrF family E3D00_04115 PF13144 Chaperone for flagella basal body P-ring formation E3D00_04120 PF00460 Flagella basal body rod protein E3D00_04120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D00_04125 PF00460 Flagella basal body rod protein E3D00_04125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D00_04135 PF03180 NLPA lipoprotein E3D00_04140 PF00005 ABC transporter E3D00_04140 PF09383 NIL domain E3D00_04145 PF00528 Binding-protein-dependent transport system inner membrane component E3D00_04155 PF00561 alpha/beta hydrolase fold E3D00_04175 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3D00_04175 PF14572 Phosphoribosyl synthetase-associated domain E3D00_04185 PF00535 Glycosyl transferase family 2 E3D00_04195 PF02321 Outer membrane efflux protein E3D00_04200 PF00873 AcrB/AcrD/AcrF family E3D00_04205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D00_04210 PF03922 OmpW family E3D00_04215 PF00325 Bacterial regulatory proteins, crp family E3D00_04215 PF00027 Cyclic nucleotide-binding domain E3D00_04230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3D00_04230 PF01872 RibD C-terminal domain E3D00_04235 PF00677 Lumazine binding domain E3D00_04240 PF00925 GTP cyclohydrolase II E3D00_04240 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3D00_04245 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3D00_04250 PF04055 Radical SAM superfamily E3D00_04250 PF13186 Iron-sulfur cluster-binding domain E3D00_04255 PF05402 Coenzyme PQQ synthesis protein D (PqqD) E3D00_04260 PF03070 TENA/THI-4/PQQC family E3D00_04265 PF12706 Beta-lactamase superfamily domain E3D00_04270 PF08042 PqqA family E3D00_04275 PF00625 Guanylate kinase E3D00_04280 PF01634 ATP phosphoribosyltransferase E3D00_04285 PF00815 Histidinol dehydrogenase E3D00_04290 PF01176 Translation initiation factor 1A / IF-1 E3D00_04295 PF02545 Maf-like protein E3D00_04315 PF00248 Aldo/keto reductase family E3D00_04350 PF01554 MatE E3D00_04355 PF00460 Flagella basal body rod protein E3D00_04355 PF07559 Flagellar basal body protein FlaE E3D00_04355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D00_04370 PF00183 Hsp90 protein E3D00_04375 PF13593 SBF-like CPA transporter family (DUF4137) E3D00_04380 PF08244 Glycosyl hydrolases family 32 C terminal E3D00_04380 PF00251 Glycosyl hydrolases family 32 N-terminal domain E3D00_04385 PF02308 MgtC family E3D00_04390 PF00326 Prolyl oligopeptidase family E3D00_04395 PF09335 SNARE associated Golgi protein E3D00_04410 PF13419 Haloacid dehalogenase-like hydrolase E3D00_04415 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3D00_04420 PF02545 Maf-like protein E3D00_04430 PF04073 Aminoacyl-tRNA editing domain E3D00_04445 PF03459 TOBE domain E3D00_04445 PF00005 ABC transporter E3D00_04450 PF00950 ABC 3 transport family E3D00_04455 PF00535 Glycosyl transferase family 2 E3D00_04460 PF04321 RmlD substrate binding domain E3D00_04465 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase E3D00_04470 PF00483 Nucleotidyl transferase E3D00_04475 PF16363 GDP-mannose 4,6 dehydratase E3D00_04490 PF17762 HTH domain found in ParB protein E3D00_04490 PF02195 ParB-like nuclease domain E3D00_04495 PF13614 AAA domain E3D00_04500 PF02527 rRNA small subunit methyltransferase G E3D00_04505 PF13932 GidA associated domain E3D00_04505 PF01134 Glucose inhibited division protein A E3D00_04510 PF10396 GTP-binding protein TrmE N-terminus E3D00_04510 PF12631 MnmE helical domain E3D00_04510 PF01926 50S ribosome-binding GTPase E3D00_04515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3D00_04515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3D00_04520 PF07497 Rho termination factor, RNA-binding domain E3D00_04520 PF07498 Rho termination factor, N-terminal domain E3D00_04520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D00_04525 PF00732 GMC oxidoreductase E3D00_04525 PF05199 GMC oxidoreductase E3D00_04535 PF02817 e3 binding domain E3D00_04535 PF00364 Biotin-requiring enzyme E3D00_04535 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3D00_04565 PF05221 S-adenosyl-L-homocysteine hydrolase E3D00_04565 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain E3D00_04575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3D00_04575 PF00205 Thiamine pyrophosphate enzyme, central domain E3D00_04575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D00_04585 PF00730 HhH-GPD superfamily base excision DNA repair protein E3D00_04585 PF14815 NUDIX domain E3D00_04600 PF18429 Domain of unknown function (DUF5609) E3D00_04610 PF00205 Thiamine pyrophosphate enzyme, central domain E3D00_04610 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3D00_04610 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D00_04615 PF10369 Small subunit of acetolactate synthase E3D00_04620 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3D00_04620 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3D00_04625 PF02675 S-adenosylmethionine decarboxylase E3D00_04630 PF17284 Spermidine synthase tetramerisation domain E3D00_04640 PF01571 Aminomethyltransferase folate-binding domain E3D00_04640 PF08669 Glycine cleavage T-protein C-terminal barrel domain E3D00_04645 PF01597 Glycine cleavage H-protein E3D00_04650 PF02347 Glycine cleavage system P-protein E3D00_04655 PF00403 Heavy-metal-associated domain E3D00_04660 PF03458 UPF0126 domain E3D00_04665 PF03951 Glutamine synthetase, beta-Grasp domain E3D00_04665 PF00120 Glutamine synthetase, catalytic domain E3D00_04670 PF00155 Aminotransferase class I and II E3D00_04675 PF01523 Putative modulator of DNA gyrase E3D00_04690 PF02325 YGGT family E3D00_04695 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E3D00_04700 PF00535 Glycosyl transferase family 2 E3D00_04705 PF00430 ATP synthase B/B' CF(0) E3D00_04710 PF00430 ATP synthase B/B' CF(0) E3D00_04715 PF00137 ATP synthase subunit C E3D00_04720 PF00119 ATP synthase A chain E3D00_04730 PF02867 Ribonucleotide reductase, barrel domain E3D00_04730 PF08471 Class II vitamin B12-dependent ribonucleotide reductase E3D00_04750 PF02600 Disulfide bond formation protein DsbB E3D00_04755 PF07043 Protein of unknown function (DUF1328) E3D00_04760 PF02540 NAD synthase E3D00_04760 PF00795 Carbon-nitrogen hydrolase E3D00_04765 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase E3D00_04765 PF00535 Glycosyl transferase family 2 E3D00_04780 PF05045 Rhamnan synthesis protein F E3D00_04795 PF03807 NADP oxidoreductase coenzyme F420-dependent E3D00_04795 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3D00_04805 PF01370 NAD dependent epimerase/dehydratase family E3D00_04810 PF01790 Prolipoprotein diacylglyceryl transferase E3D00_04820 PF01386 Ribosomal L25p family E3D00_04820 PF14693 Ribosomal protein TL5, C-terminal domain E3D00_04825 PF01195 Peptidyl-tRNA hydrolase E3D00_04830 PF01926 50S ribosome-binding GTPase E3D00_04830 PF06071 Protein of unknown function (DUF933) E3D00_04835 PF00171 Aldehyde dehydrogenase family E3D00_04840 PF01467 Cytidylyltransferase-like E3D00_04850 PF02590 Predicted SPOUT methyltransferase E3D00_04865 PF00753 Metallo-beta-lactamase superfamily E3D00_04875 PF01370 NAD dependent epimerase/dehydratase family E3D00_04920 PF02384 N-6 DNA Methylase E3D00_04930 PF01909 Nucleotidyltransferase domain E3D00_04935 PF01420 Type I restriction modification DNA specificity domain E3D00_04940 PF18766 SWI2/SNF2 ATPase E3D00_04940 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E3D00_04940 PF11867 Domain of unknown function (DUF3387) E3D00_04955 PF16363 GDP-mannose 4,6 dehydratase E3D00_04960 PF03275 UDP-galactopyranose mutase E3D00_04970 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain E3D00_04970 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain E3D00_04970 PF11974 Bacterial alpha-2-macroglobulin MG3 domain E3D00_04970 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain E3D00_04970 PF00207 Alpha-2-macroglobulin family E3D00_04970 PF07703 Alpha-2-macroglobulin bait region domain E3D00_04970 PF01835 MG2 domain E3D00_04970 PF17962 Bacterial macroglobulin domain 6 E3D00_04975 PF00905 Penicillin binding protein transpeptidase domain E3D00_04975 PF00912 Transglycosylase E3D00_04975 PF06832 Penicillin-Binding Protein C-terminus Family E3D00_04990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3D00_04995 PF01467 Cytidylyltransferase-like E3D00_05000 PF00521 DNA gyrase/topoisomerase IV, subunit A E3D00_05000 PF03989 DNA gyrase C-terminal domain, beta-propeller E3D00_05015 PF01292 Prokaryotic cytochrome b561 E3D00_05020 PF04264 YceI-like domain E3D00_05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D00_05025 PF03466 LysR substrate binding domain E3D00_05030 PF02678 Pirin E3D00_05030 PF17954 Quercetinase C-terminal cupin domain E3D00_05045 PF00535 Glycosyl transferase family 2 E3D00_05050 PF02563 Polysaccharide biosynthesis/export protein E3D00_05050 PF10531 SLBB domain E3D00_05050 PF18412 Outer-membrane lipoprotein Wza C-terminal domain E3D00_05060 PF01063 Amino-transferase class IV E3D00_05065 PF04715 Anthranilate synthase component I, N terminal region E3D00_05065 PF00425 chorismate binding enzyme E3D00_05070 PF16078 2-oxoglutarate dehydrogenase N-terminus E3D00_05070 PF00676 Dehydrogenase E1 component E3D00_05070 PF16870 2-oxoglutarate dehydrogenase C-terminal E3D00_05070 PF02779 Transketolase, pyrimidine binding domain E3D00_05085 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3D00_05085 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3D00_05095 PF00762 Ferrochelatase E3D00_05105 PF01012 Electron transfer flavoprotein domain E3D00_05105 PF00766 Electron transfer flavoprotein FAD-binding domain E3D00_05110 PF01012 Electron transfer flavoprotein domain E3D00_05120 PF02390 Putative methyltransferase E3D00_05125 PF02772 S-adenosylmethionine synthetase, central domain E3D00_05125 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3D00_05125 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3D00_05130 PF05173 Dihydrodipicolinate reductase, C-terminus E3D00_05130 PF01113 Dihydrodipicolinate reductase, N-terminus E3D00_05135 PF01556 DnaJ C terminal domain E3D00_05135 PF00226 DnaJ domain E3D00_05135 PF00684 DnaJ central domain E3D00_05140 PF00012 Hsp70 protein E3D00_05155 PF13360 PQQ-like domain E3D00_05175 PF00692 dUTPase E3D00_05180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3D00_05200 PF01565 FAD binding domain E3D00_05200 PF09330 D-lactate dehydrogenase, membrane binding E3D00_05205 PF02630 SCO1/SenC E3D00_05210 PF13185 GAF domain E3D00_05215 PF03641 Possible lysine decarboxylase E3D00_05220 PF07690 Major Facilitator Superfamily E3D00_05225 PF00817 impB/mucB/samB family E3D00_05225 PF11799 impB/mucB/samB family C-terminal domain E3D00_05245 PF07690 Major Facilitator Superfamily E3D00_05255 PF00156 Phosphoribosyl transferase domain E3D00_05260 PF00881 Nitroreductase family E3D00_05265 PF00270 DEAD/DEAH box helicase E3D00_05265 PF00271 Helicase conserved C-terminal domain E3D00_05265 PF08482 ATP-dependent helicase C-terminal E3D00_05265 PF04408 Helicase associated domain (HA2) E3D00_05270 PF07681 DoxX E3D00_05275 PF13180 PDZ domain E3D00_05280 PF00072 Response regulator receiver domain E3D00_05280 PF00486 Transcriptional regulatory protein, C terminal E3D00_05285 PF00512 His Kinase A (phospho-acceptor) domain E3D00_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_05285 PF00672 HAMP domain E3D00_05300 PF01619 Proline dehydrogenase E3D00_05300 PF00171 Aldehyde dehydrogenase family E3D00_05300 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3D00_05300 PF14850 DNA-binding domain of Proline dehydrogenase E3D00_05305 PF05198 Translation initiation factor IF-3, N-terminal domain E3D00_05305 PF00707 Translation initiation factor IF-3, C-terminal domain E3D00_05310 PF03129 Anticodon binding domain E3D00_05310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3D00_05310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3D00_05310 PF02824 TGS domain E3D00_05325 PF01025 GrpE E3D00_05330 PF00486 Transcriptional regulatory protein, C terminal E3D00_05330 PF00072 Response regulator receiver domain E3D00_05335 PF00512 His Kinase A (phospho-acceptor) domain E3D00_05335 PF00672 HAMP domain E3D00_05335 PF13755 Sensor N-terminal transmembrane domain E3D00_05335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_05335 PF13756 Stimulus-sensing domain E3D00_05340 PF03668 P-loop ATPase protein family E3D00_05345 PF01475 Ferric uptake regulator family E3D00_05355 PF00083 Sugar (and other) transporter E3D00_05360 PF01479 S4 domain E3D00_05360 PF00849 RNA pseudouridylate synthase E3D00_05365 PF01580 FtsK/SpoIIIE family E3D00_05365 PF17854 FtsK alpha domain E3D00_05365 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3D00_05365 PF09397 Ftsk gamma domain E3D00_05375 PF01479 S4 domain E3D00_05375 PF00849 RNA pseudouridylate synthase E3D00_05380 PF07722 Peptidase C26 E3D00_05385 PF14437 MafB19-like deaminase E3D00_05390 PF13180 PDZ domain E3D00_05395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3D00_05395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3D00_05395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3D00_05395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3D00_05400 PF01212 Beta-eliminating lyase E3D00_05405 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3D00_05405 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3D00_05420 PF00669 Bacterial flagellin N-terminal helical region E3D00_05420 PF00700 Bacterial flagellin C-terminal helical region E3D00_05425 PF13533 Biotin-lipoyl like E3D00_05430 PF07690 Major Facilitator Superfamily E3D00_05435 PF00440 Bacterial regulatory proteins, tetR family E3D00_05440 PF02321 Outer membrane efflux protein E3D00_05445 PF00486 Transcriptional regulatory protein, C terminal E3D00_05445 PF00072 Response regulator receiver domain E3D00_05450 PF00672 HAMP domain E3D00_05450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_05450 PF00512 His Kinase A (phospho-acceptor) domain E3D00_05460 PF00881 Nitroreductase family E3D00_05480 PF05443 ROS/MUCR transcriptional regulator protein E3D00_05485 PF01475 Ferric uptake regulator family E3D00_05495 PF00795 Carbon-nitrogen hydrolase E3D00_05500 PF01381 Helix-turn-helix E3D00_05515 PF03966 Trm112p-like protein E3D00_05520 PF00085 Thioredoxin E3D00_05540 PF00719 Inorganic pyrophosphatase E3D00_05550 PF00005 ABC transporter E3D00_05550 PF12848 ABC transporter E3D00_05570 PF01263 Aldose 1-epimerase E3D00_05575 PF06426 Serine acetyltransferase, N-terminal E3D00_05575 PF00132 Bacterial transferase hexapeptide (six repeats) E3D00_05580 PF01494 FAD binding domain E3D00_05590 PF00543 Nitrogen regulatory protein P-II E3D00_05595 PF00909 Ammonium Transporter Family E3D00_05610 PF00589 Phage integrase family E3D00_05610 PF02899 Phage integrase, N-terminal SAM-like domain E3D00_05615 PF17764 3′ DNA-binding domain (3′BD) E3D00_05615 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3D00_05615 PF18074 Primosomal protein N C-terminal domain E3D00_05615 PF00270 DEAD/DEAH box helicase E3D00_05630 PF00444 Ribosomal protein L36 E3D00_05650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D00_05650 PF00529 HlyD membrane-fusion protein of T1SS E3D00_05655 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3D00_05655 PF00326 Prolyl oligopeptidase family E3D00_05665 PF13632 Glycosyl transferase family group 2 E3D00_05670 PF04349 Periplasmic glucan biosynthesis protein, MdoG E3D00_05675 PF13649 Methyltransferase domain E3D00_05680 PF13847 Methyltransferase domain E3D00_05690 PF00155 Aminotransferase class I and II E3D00_05705 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E3D00_05710 PF03412 Peptidase C39 family E3D00_05710 PF00005 ABC transporter E3D00_05710 PF00664 ABC transporter transmembrane region E3D00_05745 PF00535 Glycosyl transferase family 2 E3D00_05750 PF00528 Binding-protein-dependent transport system inner membrane component E3D00_05755 PF00528 Binding-protein-dependent transport system inner membrane component E3D00_05760 PF00005 ABC transporter E3D00_05765 PF01895 PhoU domain E3D00_05770 PF00486 Transcriptional regulatory protein, C terminal E3D00_05770 PF00072 Response regulator receiver domain E3D00_05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_05775 PF00512 His Kinase A (phospho-acceptor) domain E3D00_05775 PF00989 PAS fold E3D00_05775 PF11808 Phosphate regulon sensor protein PhoR E3D00_05780 PF00072 Response regulator receiver domain E3D00_05785 PF08448 PAS fold E3D00_05785 PF01339 CheB methylesterase E3D00_05785 PF01739 CheR methyltransferase, SAM binding domain E3D00_05785 PF03705 CheR methyltransferase, all-alpha domain E3D00_05790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_05790 PF13426 PAS domain E3D00_05790 PF00072 Response regulator receiver domain E3D00_05795 PF00324 Amino acid permease E3D00_05810 PF02154 Flagellar motor switch protein FliM E3D00_05810 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3D00_05830 PF00529 HlyD membrane-fusion protein of T1SS E3D00_05830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D00_05835 PF00873 AcrB/AcrD/AcrF family E3D00_05840 PF02321 Outer membrane efflux protein E3D00_05875 PF00834 Ribulose-phosphate 3 epimerase family E3D00_05885 PF00534 Glycosyl transferases group 1 E3D00_05885 PF13439 Glycosyltransferase Family 4 E3D00_05895 PF00579 tRNA synthetases class I (W and Y) E3D00_05900 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E3D00_05905 PF00266 Aminotransferase class-V E3D00_05910 PF00266 Aminotransferase class-V E3D00_05915 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D00_05930 PF03466 LysR substrate binding domain E3D00_05930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D00_05935 PF01810 LysE type translocator E3D00_05940 PF00392 Bacterial regulatory proteins, gntR family E3D00_05955 PF03692 Putative zinc- or iron-chelating domain E3D00_05970 PF00005 ABC transporter E3D00_05990 PF00529 HlyD membrane-fusion protein of T1SS E3D00_05990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D00_05995 PF02321 Outer membrane efflux protein E3D00_06000 PF00684 DnaJ central domain E3D00_06000 PF01556 DnaJ C terminal domain E3D00_06000 PF00226 DnaJ domain E3D00_06010 PF00854 POT family E3D00_06030 PF00578 AhpC/TSA family E3D00_06040 PF01061 ABC-2 type transporter E3D00_06045 PF00005 ABC transporter E3D00_06055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D00_06070 PF02511 Thymidylate synthase complementing protein E3D00_06080 PF04632 Fusaric acid resistance protein family E3D00_06085 PF00529 HlyD membrane-fusion protein of T1SS E3D00_06085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D00_06120 PF12146 Serine aminopeptidase, S33 E3D00_06125 PF12146 Serine aminopeptidase, S33 E3D00_06130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D00_06130 PF03466 LysR substrate binding domain E3D00_06165 PF05488 PAAR motif E3D00_06165 PF01129 NAD:arginine ADP-ribosyltransferase E3D00_06190 PF01850 PIN domain E3D00_06205 PF02899 Phage integrase, N-terminal SAM-like domain E3D00_06205 PF00589 Phage integrase family E3D00_06215 PF10609 NUBPL iron-transfer P-loop NTPase E3D00_06220 PF13180 PDZ domain E3D00_06230 PF08125 Mannitol dehydrogenase C-terminal domain E3D00_06230 PF01232 Mannitol dehydrogenase Rossmann domain E3D00_06235 PF05099 Tellurite resistance protein TerB E3D00_06235 PF00226 DnaJ domain E3D00_06245 PF08331 Domain of unknown function (DUF1730) E3D00_06250 PF02567 Phenazine biosynthesis-like protein E3D00_06255 PF01702 Queuine tRNA-ribosyltransferase E3D00_06260 PF02547 Queuosine biosynthesis protein E3D00_06265 PF03819 MazG nucleotide pyrophosphohydrolase domain E3D00_06270 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3D00_06285 PF13393 Histidyl-tRNA synthetase E3D00_06290 PF00709 Adenylosuccinate synthetase E3D00_06295 PF02881 SRP54-type protein, helical bundle domain E3D00_06295 PF00448 SRP54-type protein, GTPase domain E3D00_06300 PF00919 Uncharacterized protein family UPF0004 E3D00_06300 PF04055 Radical SAM superfamily E3D00_06305 PF01678 Diaminopimelate epimerase E3D00_06310 PF01209 ubiE/COQ5 methyltransferase family E3D00_06315 PF00271 Helicase conserved C-terminal domain E3D00_06315 PF03880 DbpA RNA binding domain E3D00_06315 PF00270 DEAD/DEAH box helicase E3D00_06315 PF12343 Cold shock protein DEAD box A E3D00_06320 PF03976 Polyphosphate kinase 2 (PPK2) E3D00_06325 PF00106 short chain dehydrogenase E3D00_06330 PF02622 Uncharacterized ACR, COG1678 E3D00_06335 PF00248 Aldo/keto reductase family E3D00_06340 PF10431 C-terminal, D2-small domain, of ClpB protein E3D00_06340 PF07724 AAA domain (Cdc48 subfamily) E3D00_06340 PF17871 AAA lid domain E3D00_06340 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_06340 PF02861 Clp amino terminal domain, pathogenicity island component E3D00_06370 PF00106 short chain dehydrogenase E3D00_06375 PF12833 Helix-turn-helix domain E3D00_06380 PF10396 GTP-binding protein TrmE N-terminus E3D00_06380 PF12631 MnmE helical domain E3D00_06380 PF01926 50S ribosome-binding GTPase E3D00_06390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D00_06390 PF00034 Cytochrome c E3D00_06395 PF00732 GMC oxidoreductase E3D00_06395 PF05199 GMC oxidoreductase E3D00_06435 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3D00_06435 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3D00_06455 PF01569 PAP2 superfamily E3D00_06465 PF00654 Voltage gated chloride channel E3D00_06470 PF16916 Dimerisation domain of Zinc Transporter E3D00_06470 PF01545 Cation efflux family E3D00_06475 PF01545 Cation efflux family E3D00_06480 PF03350 Uncharacterized protein family, UPF0114 E3D00_06490 PF07690 Major Facilitator Superfamily E3D00_06500 PF00155 Aminotransferase class I and II E3D00_06510 PF01964 Radical SAM ThiC family E3D00_06510 PF13667 ThiC-associated domain E3D00_06525 PF13537 Glutamine amidotransferase domain E3D00_06525 PF00156 Phosphoribosyl transferase domain E3D00_06530 PF08446 PAS fold E3D00_06530 PF01590 GAF domain E3D00_06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_06530 PF00360 Phytochrome region E3D00_06530 PF00512 His Kinase A (phospho-acceptor) domain E3D00_06540 PF10415 Fumarase C C-terminus E3D00_06540 PF00206 Lyase E3D00_06565 PF03918 Cytochrome C biogenesis protein E3D00_06570 PF08534 Redoxin E3D00_06575 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3D00_06575 PF01578 Cytochrome C assembly protein E3D00_06580 PF03100 CcmE E3D00_06590 PF01578 Cytochrome C assembly protein E3D00_06610 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3D00_06630 PF00578 AhpC/TSA family E3D00_06640 PF12002 MgsA AAA+ ATPase C terminal E3D00_06640 PF16193 AAA C-terminal domain E3D00_06640 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_06645 PF01479 S4 domain E3D00_06645 PF00849 RNA pseudouridylate synthase E3D00_06660 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3D00_06660 PF02542 YgbB family E3D00_06665 PF04379 ApaG domain E3D00_06670 PF01053 Cys/Met metabolism PLP-dependent enzyme E3D00_06685 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_06690 PF01960 ArgJ family E3D00_06700 PF07517 SecA DEAD-like domain E3D00_06700 PF02810 SEC-C motif E3D00_06700 PF07516 SecA Wing and Scaffold domain E3D00_06700 PF01043 SecA preprotein cross-linking domain E3D00_06705 PF01709 Transcriptional regulator E3D00_06710 PF02075 Crossover junction endodeoxyribonuclease RuvC E3D00_06715 PF01330 RuvA N terminal domain E3D00_06715 PF07499 RuvA, C-terminal domain E3D00_06720 PF05491 RuvB C-terminal winged helix domain E3D00_06720 PF17864 RuvB AAA lid domain E3D00_06720 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3D00_06725 PF03061 Thioesterase superfamily E3D00_06730 PF01618 MotA/TolQ/ExbB proton channel family E3D00_06735 PF02472 Biopolymer transport protein ExbD/TolR E3D00_06745 PF07676 WD40-like Beta Propeller Repeat E3D00_06745 PF04052 TolB amino-terminal domain E3D00_06750 PF00691 OmpA family E3D00_06760 PF01171 PP-loop family E3D00_06765 PF17862 AAA+ lid domain E3D00_06765 PF01434 Peptidase family M41 E3D00_06765 PF00004 ATPase family associated with various cellular activities (AAA) E3D00_06770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3D00_06770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3D00_06770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3D00_06770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3D00_06775 PF08543 Phosphomethylpyrimidine kinase E3D00_06775 PF02581 Thiamine monophosphate synthase E3D00_06780 PF00072 Response regulator receiver domain E3D00_06780 PF00486 Transcriptional regulatory protein, C terminal E3D00_06785 PF18269 T3SS EscN ATPase C-terminal domain E3D00_06785 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3D00_06785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D00_06800 PF02073 Thermophilic metalloprotease (M29) E3D00_06815 PF00155 Aminotransferase class I and II E3D00_06825 PF12706 Beta-lactamase superfamily domain E3D00_06830 PF00456 Transketolase, thiamine diphosphate binding domain E3D00_06830 PF02780 Transketolase, C-terminal domain E3D00_06830 PF02779 Transketolase, pyrimidine binding domain E3D00_06835 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3D00_06840 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3D00_06840 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain E3D00_06850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E3D00_06855 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3D00_06865 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E3D00_06870 PF00300 Histidine phosphatase superfamily (branch 1) E3D00_06875 PF00924 Mechanosensitive ion channel E3D00_06875 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3D00_06875 PF12795 Mechanosensitive ion channel porin domain E3D00_06880 PF01180 Dihydroorotate dehydrogenase E3D00_06890 PF00999 Sodium/hydrogen exchanger family E3D00_06895 PF02569 Pantoate-beta-alanine ligase E3D00_06900 PF02548 Ketopantoate hydroxymethyltransferase E3D00_06910 PF01207 Dihydrouridine synthase (Dus) E3D00_06915 PF02954 Bacterial regulatory protein, Fis family E3D00_06915 PF00072 Response regulator receiver domain E3D00_06915 PF00158 Sigma-54 interaction domain E3D00_06920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_06920 PF00672 HAMP domain E3D00_06925 PF02954 Bacterial regulatory protein, Fis family E3D00_06925 PF00072 Response regulator receiver domain E3D00_06925 PF00158 Sigma-54 interaction domain E3D00_06930 PF17209 Hfq protein E3D00_06935 PF16360 GTP-binding GTPase Middle Region E3D00_06935 PF13167 GTP-binding GTPase N-terminal E3D00_06935 PF01926 50S ribosome-binding GTPase E3D00_06945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3D00_06955 PF01740 STAS domain E3D00_06955 PF00916 Sulfate permease family E3D00_06965 PF00893 Small Multidrug Resistance protein E3D00_06980 PF00572 Ribosomal protein L13 E3D00_06985 PF00380 Ribosomal protein S9/S16 E3D00_06990 PF01063 Amino-transferase class IV E3D00_06995 PF01050 Mannose-6-phosphate isomerase E3D00_06995 PF00483 Nucleotidyl transferase E3D00_07005 PF02625 XdhC and CoxI family E3D00_07005 PF13478 XdhC Rossmann domain E3D00_07010 PF03454 MoeA C-terminal region (domain IV) E3D00_07010 PF00994 Probable molybdopterin binding domain E3D00_07010 PF03453 MoeA N-terminal region (domain I and II) E3D00_07015 PF04055 Radical SAM superfamily E3D00_07015 PF06463 Molybdenum Cofactor Synthesis C E3D00_07020 PF01967 MoaC family E3D00_07025 PF12804 MobA-like NTP transferase domain E3D00_07025 PF01967 MoaC family E3D00_07035 PF02391 MoaE protein E3D00_07045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3D00_07045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3D00_07050 PF03631 Virulence factor BrkB E3D00_07055 PF03330 Lytic transglycolase E3D00_07055 PF05036 Sporulation related domain E3D00_07060 PF01220 Dehydroquinase class II E3D00_07065 PF00364 Biotin-requiring enzyme E3D00_07070 PF02785 Biotin carboxylase C-terminal domain E3D00_07070 PF00289 Biotin carboxylase, N-terminal domain E3D00_07070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3D00_07080 PF00920 Dehydratase family E3D00_07085 PF01081 KDPG and KHG aldolase E3D00_07090 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3D00_07095 PF01808 AICARFT/IMPCHase bienzyme E3D00_07095 PF02142 MGS-like domain E3D00_07110 PF13860 FlgD Ig-like domain E3D00_07110 PF13861 FlgD Tudor-like domain E3D00_07110 PF03963 Flagellar hook capping protein - N-terminal region E3D00_07115 PF08345 Flagellar M-ring protein C-terminal E3D00_07115 PF01514 Secretory protein of YscJ/FliF family E3D00_07120 PF01706 FliG C-terminal domain E3D00_07120 PF14841 FliG middle domain E3D00_07120 PF14842 FliG N-terminal domain E3D00_07130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3D00_07135 PF00771 FHIPEP family E3D00_07140 PF00448 SRP54-type protein, GTPase domain E3D00_07145 PF00795 Carbon-nitrogen hydrolase E3D00_07150 PF01513 ATP-NAD kinase E3D00_07155 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3D00_07160 PF03547 Membrane transport protein E3D00_07170 PF03949 Malic enzyme, NAD binding domain E3D00_07170 PF00390 Malic enzyme, N-terminal domain E3D00_07175 PF06628 Catalase-related immune-responsive E3D00_07175 PF00199 Catalase E3D00_07180 PF00140 Sigma-70 factor, region 1.2 E3D00_07180 PF04545 Sigma-70, region 4 E3D00_07180 PF04542 Sigma-70 region 2 E3D00_07185 PF00849 RNA pseudouridylate synthase E3D00_07195 PF01022 Bacterial regulatory protein, arsR family E3D00_07200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3D00_07220 PF07715 TonB-dependent Receptor Plug Domain E3D00_07220 PF00593 TonB dependent receptor E3D00_07530 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) E3D00_07560 PF00436 Single-strand binding protein family E3D00_07645 PF12146 Serine aminopeptidase, S33 E3D00_07650 PF01367 5'-3' exonuclease, C-terminal SAM fold E3D00_07650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3D00_07650 PF00476 DNA polymerase family A E3D00_07650 PF01612 3'-5' exonuclease E3D00_07660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D00_07665 PF02844 Phosphoribosylglycinamide synthetase, N domain E3D00_07665 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E3D00_07665 PF02843 Phosphoribosylglycinamide synthetase, C domain E3D00_07670 PF13742 OB-fold nucleic acid binding domain E3D00_07670 PF02601 Exonuclease VII, large subunit E3D00_07680 PF00575 S1 RNA binding domain E3D00_07680 PF12111 Polyribonucleotide phosphorylase C terminal E3D00_07680 PF10150 Ribonuclease E/G family E3D00_07685 PF01520 N-acetylmuramoyl-L-alanine amidase E3D00_07690 PF00682 HMGL-like E3D00_07690 PF08502 LeuA allosteric (dimerisation) domain E3D00_07695 PF01925 Sulfite exporter TauE/SafE E3D00_07725 PF00905 Penicillin binding protein transpeptidase domain E3D00_07725 PF03717 Penicillin-binding Protein dimerisation domain E3D00_07730 PF01098 Cell cycle protein E3D00_07740 PF02092 Glycyl-tRNA synthetase beta subunit E3D00_07740 PF05746 DALR anticodon binding domain E3D00_07745 PF02091 Glycyl-tRNA synthetase alpha subunit E3D00_07755 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_07755 PF14759 Reductase C-terminal E3D00_07760 PF01336 OB-fold nucleic acid binding domain E3D00_07760 PF02938 GAD domain E3D00_07760 PF00152 tRNA synthetases class II (D, K and N) E3D00_07775 PF01521 Iron-sulphur cluster biosynthesis E3D00_07780 PF01966 HD domain E3D00_07780 PF13286 Phosphohydrolase-associated domain E3D00_07785 PF00750 tRNA synthetases class I (R) E3D00_07785 PF03485 Arginyl tRNA synthetase N terminal domain E3D00_07785 PF05746 DALR anticodon binding domain E3D00_07795 PF02616 Segregation and condensation protein ScpA E3D00_07800 PF04079 Segregation and condensation complex subunit ScpB E3D00_07810 PF00902 Sec-independent protein translocase protein (TatC) E3D00_07815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3D00_07815 PF02403 Seryl-tRNA synthetase N-terminal domain E3D00_07820 PF01381 Helix-turn-helix E3D00_07830 PF00175 Oxidoreductase NAD-binding domain E3D00_07830 PF00970 Oxidoreductase FAD-binding domain E3D00_07835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D00_07835 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_07845 PF00561 alpha/beta hydrolase fold E3D00_07855 PF13532 2OG-Fe(II) oxygenase superfamily E3D00_07860 PF01474 Class-II DAHP synthetase family E3D00_07875 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3D00_07875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3D00_07880 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3D00_07890 PF00588 SpoU rRNA Methylase family E3D00_07895 PF09190 DALR domain E3D00_07895 PF01406 tRNA synthetases class I (C) catalytic domain E3D00_07900 PF01554 MatE E3D00_07910 PF01479 S4 domain E3D00_07910 PF00163 Ribosomal protein S4/S9 N-terminal domain E3D00_07915 PF00009 Elongation factor Tu GTP binding domain E3D00_07915 PF03144 Elongation factor Tu domain 2 E3D00_07915 PF16658 Class II release factor RF3, C-terminal domain E3D00_07920 PF01636 Phosphotransferase enzyme family E3D00_07935 PF00484 Carbonic anhydrase E3D00_07940 PF02272 DHHA1 domain E3D00_07940 PF01411 tRNA synthetases class II (A) E3D00_07940 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3D00_07950 PF00691 OmpA family E3D00_07955 PF01761 3-dehydroquinate synthase E3D00_07965 PF02899 Phage integrase, N-terminal SAM-like domain E3D00_07965 PF00589 Phage integrase family E3D00_07970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3D00_07975 PF02464 Competence-damaged protein E3D00_07975 PF00994 Probable molybdopterin binding domain E3D00_07980 PF08450 SMP-30/Gluconolactonase/LRE-like region E3D00_07985 PF00293 NUDIX domain E3D00_07995 PF02699 Preprotein translocase subunit E3D00_08000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3D00_08000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3D00_08010 PF00174 Oxidoreductase molybdopterin binding domain E3D00_08015 PF01794 Ferric reductase like transmembrane component E3D00_08030 PF01192 RNA polymerase Rpb6 E3D00_08035 PF13291 ACT domain E3D00_08035 PF04607 Region found in RelA / SpoT proteins E3D00_08035 PF02824 TGS domain E3D00_08040 PF01648 4'-phosphopantetheinyl transferase superfamily E3D00_08045 PF10502 Signal peptidase, peptidase S26 E3D00_08050 PF00035 Double-stranded RNA binding motif E3D00_08050 PF14622 Ribonuclease-III-like E3D00_08055 PF01926 50S ribosome-binding GTPase E3D00_08055 PF07650 KH domain E3D00_08060 PF00696 Amino acid kinase family E3D00_08065 PF01765 Ribosome recycling factor E3D00_08070 PF01255 Putative undecaprenyl diphosphate synthase E3D00_08080 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3D00_08080 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3D00_08080 PF13288 DXP reductoisomerase C-terminal domain E3D00_08085 PF02163 Peptidase family M50 E3D00_08085 PF17820 PDZ domain E3D00_08090 PF07244 Surface antigen variable number repeat E3D00_08090 PF01103 Surface antigen E3D00_08100 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3D00_08100 PF00132 Bacterial transferase hexapeptide (six repeats) E3D00_08105 PF07977 FabA-like domain E3D00_08110 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3D00_08110 PF00132 Bacterial transferase hexapeptide (six repeats) E3D00_08115 PF06230 LpxI C-terminal domain E3D00_08115 PF17930 LpxI N-terminal domain E3D00_08120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D00_08130 PF00468 Ribosomal protein L34 E3D00_08135 PF00825 Ribonuclease P E3D00_08140 PF01809 Putative membrane protein insertion efficiency factor E3D00_08145 PF14849 YidC periplasmic domain E3D00_08145 PF02096 60Kd inner membrane protein E3D00_08150 PF01926 50S ribosome-binding GTPase E3D00_08155 PF00696 Amino acid kinase family E3D00_08160 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3D00_08160 PF14602 Hexapeptide repeat of succinyl-transferase E3D00_08160 PF00132 Bacterial transferase hexapeptide (six repeats) E3D00_08165 PF01546 Peptidase family M20/M25/M40 E3D00_08165 PF07687 Peptidase dimerisation domain E3D00_08175 PF01416 tRNA pseudouridine synthase E3D00_08180 PF00551 Formyl transferase E3D00_08180 PF02911 Formyl transferase, C-terminal domain E3D00_08185 PF01327 Polypeptide deformylase E3D00_08195 PF00011 Hsp20/alpha crystallin family E3D00_08205 PF01042 Endoribonuclease L-PSP E3D00_08210 PF00005 ABC transporter E3D00_08225 PF01380 SIS domain E3D00_08225 PF00571 CBS domain E3D00_08240 PF00881 Nitroreductase family E3D00_08250 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_08250 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3D00_08255 PF01493 GXGXG motif E3D00_08255 PF04898 Glutamate synthase central domain E3D00_08255 PF01645 Conserved region in glutamate synthase E3D00_08255 PF00310 Glutamine amidotransferases class-II E3D00_08260 PF08439 Oligopeptidase F E3D00_08260 PF01432 Peptidase family M3 E3D00_08265 PF03109 ABC1 family E3D00_08275 PF00271 Helicase conserved C-terminal domain E3D00_08275 PF04851 Type III restriction enzyme, res subunit E3D00_08275 PF02151 UvrB/uvrC motif E3D00_08275 PF12344 Ultra-violet resistance protein B E3D00_08275 PF17757 UvrB interaction domain E3D00_08285 PF03449 Transcription elongation factor, N-terminal E3D00_08285 PF01272 Transcription elongation factor, GreA/GreB, C-term E3D00_08290 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3D00_08290 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3D00_08295 PF01209 ubiE/COQ5 methyltransferase family E3D00_08300 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3D00_08305 PF01040 UbiA prenyltransferase family E3D00_08315 PF01523 Putative modulator of DNA gyrase E3D00_08320 PF00675 Insulinase (Peptidase family M16) E3D00_08320 PF05193 Peptidase M16 inactive domain E3D00_08325 PF14821 Threonine synthase N terminus E3D00_08325 PF00291 Pyridoxal-phosphate dependent enzyme E3D00_08345 PF01966 HD domain E3D00_08345 PF08335 GlnD PII-uridylyltransferase E3D00_08350 PF05192 MutS domain III E3D00_08350 PF05188 MutS domain II E3D00_08350 PF00488 MutS domain V E3D00_08350 PF01624 MutS domain I E3D00_08350 PF05190 MutS family domain IV E3D00_08355 PF03023 Lipid II flippase MurJ E3D00_08360 PF00255 Glutathione peroxidase E3D00_08365 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3D00_08365 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3D00_08370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E3D00_08375 PF00814 Glycoprotease family E3D00_08380 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3D00_08380 PF03900 Porphobilinogen deaminase, C-terminal domain E3D00_08390 PF02556 Preprotein translocase subunit SecB E3D00_08405 PF01555 DNA methylase E3D00_08410 PF00034 Cytochrome c E3D00_08410 PF14376 Haem-binding domain E3D00_08410 PF03150 Di-haem cytochrome c peroxidase E3D00_08425 PF01218 Coproporphyrinogen III oxidase E3D00_08430 PF01048 Phosphorylase superfamily E3D00_08435 PF01738 Dienelactone hydrolase family E3D00_08445 PF00166 Chaperonin 10 Kd subunit E3D00_08450 PF00118 TCP-1/cpn60 chaperonin family E3D00_08460 PF13307 Helicase C-terminal domain E3D00_08460 PF06733 DEAD_2 E3D00_08465 PF01921 tRNA synthetases class I (K) E3D00_08470 PF03706 Lysylphosphatidylglycerol synthase TM region E3D00_08475 PF01914 MarC family integral membrane protein E3D00_08480 PF03167 Uracil DNA glycosylase superfamily E3D00_08490 PF01027 Inhibitor of apoptosis-promoting Bax1 E3D00_08495 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3D00_08495 PF06481 COX Aromatic Rich Motif E3D00_08500 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3D00_08505 PF00510 Cytochrome c oxidase subunit III E3D00_08510 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3D00_08515 PF11953 Domain of unknown function (DUF3470) E3D00_08515 PF00037 4Fe-4S binding domain E3D00_08520 PF00849 RNA pseudouridylate synthase E3D00_08520 PF01479 S4 domain E3D00_08530 PF02789 Cytosol aminopeptidase family, N-terminal domain E3D00_08530 PF00883 Cytosol aminopeptidase family, catalytic domain E3D00_08540 PF00953 Glycosyl transferase family 4 E3D00_08545 PF02719 Polysaccharide biosynthesis protein E3D00_08550 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3D00_08565 PF00005 ABC transporter E3D00_08565 PF12848 ABC transporter E3D00_08570 PF00334 Nucleoside diphosphate kinase E3D00_08580 PF00296 Luciferase-like monooxygenase E3D00_08595 PF00551 Formyl transferase E3D00_08600 PF00586 AIR synthase related protein, N-terminal domain E3D00_08600 PF02769 AIR synthase related protein, C-terminal domain E3D00_08610 PF17941 Polyphosphate kinase C-terminal domain 1 E3D00_08610 PF02503 Polyphosphate kinase middle domain E3D00_08610 PF13089 Polyphosphate kinase N-terminal domain E3D00_08610 PF13090 Polyphosphate kinase C-terminal domain 2 E3D00_08615 PF02541 Ppx/GppA phosphatase family E3D00_08620 PF02611 CDP-diacylglycerol pyrophosphatase E3D00_08625 PF07690 Major Facilitator Superfamily E3D00_08640 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3D00_08640 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3D00_08650 PF00072 Response regulator receiver domain E3D00_08650 PF13426 PAS domain E3D00_08650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_08670 PF02540 NAD synthase E3D00_08670 PF00958 GMP synthase C terminal domain E3D00_08670 PF00117 Glutamine amidotransferase class-I E3D00_08705 PF00206 Lyase E3D00_08705 PF14698 Argininosuccinate lyase C-terminal E3D00_08710 PF08534 Redoxin E3D00_08720 PF08501 Shikimate dehydrogenase substrate binding domain E3D00_08720 PF01488 Shikimate / quinate 5-dehydrogenase E3D00_08720 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3D00_08725 PF01121 Dephospho-CoA kinase E3D00_08730 PF00929 Exonuclease E3D00_08740 PF13439 Glycosyltransferase Family 4 E3D00_08740 PF00534 Glycosyl transferases group 1 E3D00_08745 PF00733 Asparagine synthase E3D00_08745 PF13537 Glutamine amidotransferase domain E3D00_08750 PF01979 Amidohydrolase family E3D00_08770 PF13360 PQQ-like domain E3D00_08775 PF01926 50S ribosome-binding GTPase E3D00_08775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3D00_08780 PF00083 Sugar (and other) transporter E3D00_08785 PF07690 Major Facilitator Superfamily E3D00_08795 PF01040 UbiA prenyltransferase family E3D00_08800 PF04452 RNA methyltransferase E3D00_08805 PF04107 Glutamate-cysteine ligase family 2(GCS2) E3D00_08815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D00_08835 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3D00_08840 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3D00_08855 PF01243 Pyridoxamine 5'-phosphate oxidase E3D00_08855 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E3D00_08865 PF01264 Chorismate synthase E3D00_08870 PF02566 OsmC-like protein E3D00_08875 PF00317 Ribonucleotide reductase, all-alpha domain E3D00_08875 PF02867 Ribonucleotide reductase, barrel domain E3D00_08875 PF03477 ATP cone domain E3D00_08880 PF00268 Ribonucleotide reductase, small chain E3D00_08890 PF00348 Polyprenyl synthetase E3D00_08895 PF01177 Asp/Glu/Hydantoin racemase E3D00_08900 PF00156 Phosphoribosyl transferase domain E3D00_08910 PF00285 Citrate synthase, C-terminal domain E3D00_08915 PF02153 Prephenate dehydrogenase E3D00_08915 PF01817 Chorismate mutase type II E3D00_08925 PF02463 RecF/RecN/SMC N terminal domain E3D00_08930 PF13462 Thioredoxin E3D00_08935 PF13462 Thioredoxin E3D00_08940 PF03471 Transporter associated domain E3D00_08940 PF00571 CBS domain E3D00_08945 PF02130 Uncharacterized protein family UPF0054 E3D00_08950 PF02562 PhoH-like protein E3D00_08955 PF00919 Uncharacterized protein family UPF0004 E3D00_08955 PF04055 Radical SAM superfamily E3D00_08955 PF01938 TRAM domain E3D00_08965 PF17243 POTRA domain TamA domain 1 E3D00_08965 PF01103 Surface antigen E3D00_08965 PF07244 Surface antigen variable number repeat E3D00_08985 PF02559 CarD-like/TRCF domain E3D00_08990 PF01062 Bestrophin, RFP-TM, chloride channel E3D00_08995 PF00107 Zinc-binding dehydrogenase E3D00_08995 PF08240 Alcohol dehydrogenase GroES-like domain E3D00_09000 PF00756 Putative esterase E3D00_09005 PF01502 Phosphoribosyl-AMP cyclohydrolase E3D00_09025 PF00005 ABC transporter E3D00_09040 PF04055 Radical SAM superfamily E3D00_09040 PF06968 Biotin and Thiamin Synthesis associated domain E3D00_09055 PF01431 Peptidase family M13 E3D00_09055 PF05649 Peptidase family M13 E3D00_09065 PF03783 Curli production assembly/transport component CsgG E3D00_09075 PF05643 Putative bacterial lipoprotein (DUF799) E3D00_09090 PF00698 Acyl transferase domain E3D00_09100 PF00550 Phosphopantetheine attachment site E3D00_09105 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D00_09105 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D00_09110 PF02618 YceG-like family E3D00_09120 PF00459 Inositol monophosphatase family E3D00_09125 PF04616 Glycosyl hydrolases family 43 E3D00_09125 PF16369 C-terminal lipocalin-like domain E3D00_09130 PF00534 Glycosyl transferases group 1 E3D00_09130 PF13439 Glycosyltransferase Family 4 E3D00_09155 PF00149 Calcineurin-like phosphoesterase E3D00_09170 PF00155 Aminotransferase class I and II E3D00_09175 PF00550 Phosphopantetheine attachment site E3D00_09180 PF00501 AMP-binding enzyme E3D00_09185 PF14824 Sirohaem biosynthesis protein central E3D00_09185 PF10414 Sirohaem synthase dimerisation region E3D00_09185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D00_09190 PF04960 Glutaminase E3D00_09195 PF01566 Natural resistance-associated macrophage protein E3D00_09205 PF00106 short chain dehydrogenase E3D00_09215 PF02574 Homocysteine S-methyltransferase E3D00_09215 PF00809 Pterin binding enzyme E3D00_09215 PF02965 Vitamin B12 dependent methionine synthase, activation domain E3D00_09215 PF02607 B12 binding domain E3D00_09215 PF02310 B12 binding domain E3D00_09260 PF04454 Encapsulating protein for peroxidase E3D00_09265 PF04261 Dyp-type peroxidase family E3D00_09275 PF08274 PhnA Zinc-Ribbon E3D00_09275 PF03831 PhnA domain E3D00_09280 PF07681 DoxX E3D00_09285 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3D00_09285 PF14850 DNA-binding domain of Proline dehydrogenase E3D00_09285 PF01619 Proline dehydrogenase E3D00_09285 PF00171 Aldehyde dehydrogenase family E3D00_09290 PF01037 Lrp/AsnC ligand binding domain E3D00_09295 PF00144 Beta-lactamase E3D00_09305 PF00274 Fructose-bisphosphate aldolase class-I E3D00_09310 PF00300 Histidine phosphatase superfamily (branch 1) E3D00_09320 PF00881 Nitroreductase family E3D00_09335 PF02654 Cobalamin-5-phosphate synthase E3D00_09340 PF02277 Phosphoribosyltransferase E3D00_09345 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase E3D00_09355 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3D00_09355 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3D00_09360 PF02514 CobN/Magnesium Chelatase E3D00_09365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3D00_09370 PF02570 Precorrin-8X methylmutase E3D00_09375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D00_09380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D00_09385 PF02571 Precorrin-6x reductase CbiJ/CobK E3D00_09390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D00_09400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D00_09405 PF01888 CbiD E3D00_09410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3D00_09410 PF07685 CobB/CobQ-like glutamine amidotransferase domain E3D00_09415 PF12557 Cob(I)alamin adenosyltransferase N terminal E3D00_09415 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP E3D00_09420 PF07685 CobB/CobQ-like glutamine amidotransferase domain E3D00_09425 PF03186 CobD/Cbib protein E3D00_09430 PF00155 Aminotransferase class I and II E3D00_09440 PF07715 TonB-dependent Receptor Plug Domain E3D00_09440 PF00593 TonB dependent receptor E3D00_09445 PF00005 ABC transporter E3D00_09455 PF01032 FecCD transport family E3D00_09465 PF02447 GntP family permease E3D00_09470 PF07690 Major Facilitator Superfamily E3D00_09485 PF01170 Putative RNA methylase family UPF0020 E3D00_09485 PF02926 THUMP domain E3D00_09495 PF02445 Quinolinate synthetase A protein E3D00_09500 PF00890 FAD binding domain E3D00_09500 PF02910 Fumarate reductase flavoprotein C-term E3D00_09505 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E3D00_09505 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E3D00_09510 PF01384 Phosphate transporter family E3D00_09550 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3D00_09555 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3D00_09570 PF02556 Preprotein translocase subunit SecB E3D00_09585 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3D00_09590 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3D00_09610 PF00899 ThiF family E3D00_09625 PF00224 Pyruvate kinase, barrel domain E3D00_09625 PF02887 Pyruvate kinase, alpha/beta domain E3D00_09630 PF02153 Prephenate dehydrogenase E3D00_09630 PF01842 ACT domain E3D00_09640 PF01370 NAD dependent epimerase/dehydratase family E3D00_09645 PF00535 Glycosyl transferase family 2 E3D00_09660 PF01593 Flavin containing amine oxidoreductase E3D00_09665 PF13249 Squalene-hopene cyclase N-terminal domain E3D00_09665 PF13243 Squalene-hopene cyclase C-terminal domain E3D00_09675 PF01728 FtsJ-like methyltransferase E3D00_09690 PF00478 IMP dehydrogenase / GMP reductase domain E3D00_09690 PF00571 CBS domain E3D00_09695 PF01189 16S rRNA methyltransferase RsmB/F E3D00_09695 PF01029 NusB family E3D00_09710 PF00486 Transcriptional regulatory protein, C terminal E3D00_09710 PF00072 Response regulator receiver domain E3D00_09715 PF03372 Endonuclease/Exonuclease/phosphatase family E3D00_09720 PF01244 Membrane dipeptidase (Peptidase family M19) E3D00_09725 PF02151 UvrB/uvrC motif E3D00_09725 PF12826 Helix-hairpin-helix motif E3D00_09725 PF08459 UvrC Helix-hairpin-helix N-terminal E3D00_09725 PF01541 GIY-YIG catalytic domain E3D00_09730 PF01066 CDP-alcohol phosphatidyltransferase E3D00_09740 PF01726 LexA DNA binding domain E3D00_09740 PF00717 Peptidase S24-like E3D00_09745 PF00471 Ribosomal protein L33 E3D00_09755 PF03952 Enolase, N-terminal domain E3D00_09755 PF00113 Enolase, C-terminal TIM barrel domain E3D00_09765 PF00793 DAHP synthetase I family E3D00_09770 PF06418 CTP synthase N-terminus E3D00_09770 PF00117 Glutamine amidotransferase class-I E3D00_09790 PF00425 chorismate binding enzyme E3D00_09790 PF04715 Anthranilate synthase component I, N terminal region E3D00_09795 PF00117 Glutamine amidotransferase class-I E3D00_09800 PF00591 Glycosyl transferase family, a/b domain E3D00_09800 PF02885 Glycosyl transferase family, helical bundle domain E3D00_09805 PF00218 Indole-3-glycerol phosphate synthase E3D00_09810 PF00676 Dehydrogenase E1 component E3D00_09815 PF00364 Biotin-requiring enzyme E3D00_09815 PF02779 Transketolase, pyrimidine binding domain E3D00_09815 PF02780 Transketolase, C-terminal domain E3D00_09820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3D00_09820 PF00364 Biotin-requiring enzyme E3D00_09820 PF02817 e3 binding domain E3D00_09825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D00_09825 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_09830 PF04055 Radical SAM superfamily E3D00_09845 PF02464 Competence-damaged protein E3D00_09845 PF00994 Probable molybdopterin binding domain E3D00_09845 PF18146 Damage-inducible protein CinA KH domain E3D00_09850 PF14718 Soluble lytic murein transglycosylase L domain E3D00_09850 PF01464 Transglycosylase SLT domain E3D00_09855 PF03741 Integral membrane protein TerC family E3D00_09860 PF10397 Adenylosuccinate lyase C-terminus E3D00_09860 PF00206 Lyase E3D00_09865 PF01259 SAICAR synthetase E3D00_09870 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase E3D00_09885 PF00586 AIR synthase related protein, N-terminal domain E3D00_09885 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3D00_09885 PF02769 AIR synthase related protein, C-terminal domain E3D00_09895 PF00462 Glutaredoxin E3D00_09905 PF02021 Uncharacterised protein family UPF0102 E3D00_09910 PF00490 Delta-aminolevulinic acid dehydratase E3D00_09915 PF13520 Amino acid permease E3D00_09920 PF00464 Serine hydroxymethyltransferase E3D00_09925 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E3D00_09930 PF01546 Peptidase family M20/M25/M40 E3D00_09930 PF07687 Peptidase dimerisation domain E3D00_09935 PF00271 Helicase conserved C-terminal domain E3D00_09935 PF00270 DEAD/DEAH box helicase E3D00_09950 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E3D00_09955 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_09960 PF00881 Nitroreductase family E3D00_09965 PF00475 Imidazoleglycerol-phosphate dehydratase E3D00_09975 PF00117 Glutamine amidotransferase class-I E3D00_09985 PF00977 Histidine biosynthesis protein E3D00_09990 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E3D00_09995 PF01230 HIT domain E3D00_10005 PF02734 DAK2 domain E3D00_10005 PF02733 Dak1 domain E3D00_10020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3D00_10020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3D00_10040 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D00_10045 PF07690 Major Facilitator Superfamily E3D00_10070 PF17954 Quercetinase C-terminal cupin domain E3D00_10070 PF02678 Pirin E3D00_10080 PF01321 Creatinase/Prolidase N-terminal domain E3D00_10080 PF00557 Metallopeptidase family M24 E3D00_10095 PF00580 UvrD/REP helicase N-terminal domain E3D00_10095 PF13361 UvrD-like helicase C-terminal domain E3D00_10100 PF04002 RadC-like JAB domain E3D00_10105 PF04002 RadC-like JAB domain E3D00_10110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3D00_10110 PF02222 ATP-grasp domain E3D00_10115 PF00731 AIR carboxylase E3D00_10130 PF00011 Hsp20/alpha crystallin family E3D00_10135 PF01197 Ribosomal protein L31 E3D00_10140 PF01741 Large-conductance mechanosensitive channel, MscL E3D00_10150 PF07549 SecD/SecF GG Motif E3D00_10150 PF02355 Protein export membrane protein E3D00_10155 PF02355 Protein export membrane protein E3D00_10155 PF07549 SecD/SecF GG Motif E3D00_10160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3D00_10160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3D00_10170 PF00072 Response regulator receiver domain E3D00_10175 PF04542 Sigma-70 region 2 E3D00_10175 PF08281 Sigma-70, region 4 E3D00_10180 PF04542 Sigma-70 region 2 E3D00_10180 PF08281 Sigma-70, region 4 E3D00_10185 PF12282 Signal transduction histidine kinase E3D00_10185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D00_10185 PF07568 Histidine kinase E3D00_10190 PF00664 ABC transporter transmembrane region E3D00_10190 PF00005 ABC transporter E3D00_10195 PF00005 ABC transporter E3D00_10195 PF00664 ABC transporter transmembrane region E3D00_10205 PF00570 HRDC domain E3D00_10205 PF16124 RecQ zinc-binding E3D00_10205 PF09382 RQC domain E3D00_10205 PF00271 Helicase conserved C-terminal domain E3D00_10205 PF00270 DEAD/DEAH box helicase E3D00_10215 PF03477 ATP cone domain E3D00_10220 PF01029 NusB family E3D00_10225 PF00586 AIR synthase related protein, N-terminal domain E3D00_10225 PF02769 AIR synthase related protein, C-terminal domain E3D00_10235 PF00106 short chain dehydrogenase E3D00_10240 PF02685 Glucokinase E3D00_10260 PF00133 tRNA synthetases class I (I, L, M and V) E3D00_10260 PF08264 Anticodon-binding domain of tRNA E3D00_10260 PF10458 Valyl tRNA synthetase tRNA binding arm E3D00_10265 PF00920 Dehydratase family E3D00_10270 PF01625 Peptide methionine sulfoxide reductase E3D00_10275 PF00005 ABC transporter E3D00_10285 PF00692 dUTPase E3D00_10290 PF04127 DNA / pantothenate metabolism flavoprotein E3D00_10290 PF02441 Flavoprotein E3D00_10295 PF01209 ubiE/COQ5 methyltransferase family E3D00_10300 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3D00_10300 PF06827 Zinc finger found in FPG and IleRS E3D00_10300 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3D00_10305 PF01649 Ribosomal protein S20 E3D00_10355 PF01850 PIN domain E3D00_10430 PF00239 Resolvase, N terminal domain E3D00_10430 PF02796 Helix-turn-helix domain of resolvase E3D00_10435 PF01381 Helix-turn-helix E3D00_10440 PF05973 Phage derived protein Gp49-like (DUF891) E3D00_10450 PF00817 impB/mucB/samB family E3D00_10450 PF13438 Domain of unknown function (DUF4113) E3D00_10450 PF11799 impB/mucB/samB family C-terminal domain E3D00_10450 PF11798 IMS family HHH motif E3D00_10455 PF01726 LexA DNA binding domain E3D00_10455 PF00717 Peptidase S24-like E3D00_10480 PF13614 AAA domain