locus-tag class description E3E12_00005 PF11638 DnaA N-terminal domain E3E12_00005 PF00308 Bacterial dnaA protein E3E12_00005 PF08299 Bacterial dnaA protein helix-turn-helix E3E12_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3E12_00010 PF02767 DNA polymerase III beta subunit, central domain E3E12_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3E12_00035 PF00155 Aminotransferase class I and II E3E12_00045 PF00501 AMP-binding enzyme E3E12_00050 PF01168 Alanine racemase, N-terminal domain E3E12_00050 PF00842 Alanine racemase, C-terminal domain E3E12_00060 PF00999 Sodium/hydrogen exchanger family E3E12_00070 PF02040 Arsenical pump membrane protein E3E12_00075 PF02798 Glutathione S-transferase, N-terminal domain E3E12_00075 PF00043 Glutathione S-transferase, C-terminal domain E3E12_00100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3E12_00115 PF00892 EamA-like transporter family E3E12_00170 PF00459 Inositol monophosphatase family E3E12_00180 PF02618 YceG-like family E3E12_00185 PF00109 Beta-ketoacyl synthase, N-terminal domain E3E12_00185 PF02801 Beta-ketoacyl synthase, C-terminal domain E3E12_00190 PF00550 Phosphopantetheine attachment site E3E12_00200 PF00698 Acyl transferase domain E3E12_00210 PF01431 Peptidase family M13 E3E12_00210 PF05649 Peptidase family M13 E3E12_00215 PF04055 Radical SAM superfamily E3E12_00215 PF06968 Biotin and Thiamin Synthesis associated domain E3E12_00230 PF00005 ABC transporter E3E12_00235 PF02405 Permease MlaE E3E12_00245 PF01502 Phosphoribosyl-AMP cyclohydrolase E3E12_00250 PF01062 Bestrophin, RFP-TM, chloride channel E3E12_00255 PF02559 CarD-like/TRCF domain E3E12_00275 PF01103 Surface antigen E3E12_00275 PF07244 Surface antigen variable number repeat E3E12_00275 PF17243 POTRA domain TamA domain 1 E3E12_00285 PF01938 TRAM domain E3E12_00285 PF00919 Uncharacterized protein family UPF0004 E3E12_00285 PF04055 Radical SAM superfamily E3E12_00290 PF02562 PhoH-like protein E3E12_00295 PF02130 Uncharacterized protein family UPF0054 E3E12_00300 PF00571 CBS domain E3E12_00300 PF03471 Transporter associated domain E3E12_00305 PF13462 Thioredoxin E3E12_00320 PF00156 Phosphoribosyl transferase domain E3E12_00325 PF01177 Asp/Glu/Hydantoin racemase E3E12_00330 PF00348 Polyprenyl synthetase E3E12_00335 PF00268 Ribonucleotide reductase, small chain E3E12_00340 PF03477 ATP cone domain E3E12_00340 PF02867 Ribonucleotide reductase, barrel domain E3E12_00340 PF00317 Ribonucleotide reductase, all-alpha domain E3E12_00345 PF01264 Chorismate synthase E3E12_00355 PF01243 Pyridoxamine 5'-phosphate oxidase E3E12_00355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E3E12_00360 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3E12_00365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3E12_00380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3E12_00390 PF04107 Glutamate-cysteine ligase family 2(GCS2) E3E12_00395 PF04452 RNA methyltransferase E3E12_00400 PF01040 UbiA prenyltransferase family E3E12_00405 PF01926 50S ribosome-binding GTPase E3E12_00405 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3E12_00410 PF13360 PQQ-like domain E3E12_00420 PF01979 Amidohydrolase family E3E12_00430 PF00929 Exonuclease E3E12_00435 PF01121 Dephospho-CoA kinase E3E12_00440 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3E12_00440 PF01488 Shikimate / quinate 5-dehydrogenase E3E12_00440 PF08501 Shikimate dehydrogenase substrate binding domain E3E12_00455 PF14698 Argininosuccinate lyase C-terminal E3E12_00455 PF00206 Lyase E3E12_00470 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3E12_00475 PF12706 Beta-lactamase superfamily domain E3E12_00480 PF01026 TatD related DNase E3E12_00485 PF09334 tRNA synthetases class I (M) E3E12_00485 PF08264 Anticodon-binding domain of tRNA E3E12_00490 PF09115 DNA polymerase III, delta subunit, C terminal E3E12_00495 PF02223 Thymidylate kinase E3E12_00500 PF07943 Penicillin-binding protein 5, C-terminal domain E3E12_00500 PF00768 D-alanyl-D-alanine carboxypeptidase E3E12_00505 PF13406 Transglycosylase SLT domain E3E12_00525 PF02673 Bacitracin resistance protein BacA E3E12_00530 PF13520 Amino acid permease E3E12_00545 PF17827 PrmC N-terminal domain E3E12_00545 PF13847 Methyltransferase domain E3E12_00560 PF00472 RF-1 domain E3E12_00560 PF03462 PCRF domain E3E12_00565 PF13393 Histidyl-tRNA synthetase E3E12_00565 PF03129 Anticodon binding domain E3E12_00570 PF04551 GcpE protein E3E12_00580 PF03060 Nitronate monooxygenase E3E12_00585 PF01842 ACT domain E3E12_00585 PF13840 ACT domain E3E12_00585 PF00696 Amino acid kinase family E3E12_00595 PF10282 Lactonase, 7-bladed beta-propeller E3E12_00605 PF00462 Glutaredoxin E3E12_00615 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3E12_00615 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3E12_00615 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3E12_00615 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3E12_00620 PF00483 Nucleotidyl transferase E3E12_00640 PF01722 BolA-like protein E3E12_00645 PF01556 DnaJ C terminal domain E3E12_00645 PF00226 DnaJ domain E3E12_00645 PF00684 DnaJ central domain E3E12_00650 PF07728 AAA domain (dynein-related subfamily) E3E12_00650 PF12556 Cobaltochelatase CobS subunit N terminal E3E12_00650 PF08406 CbbQ/NirQ/NorQ C-terminal E3E12_00655 PF06213 Cobalamin biosynthesis protein CobT E3E12_00655 PF11775 Cobalamin biosynthesis protein CobT VWA domain E3E12_00665 PF02811 PHP domain E3E12_00665 PF14579 Helix-hairpin-helix motif E3E12_00665 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3E12_00665 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3E12_00670 PF00005 ABC transporter E3E12_00675 PF12704 MacB-like periplasmic core domain E3E12_00675 PF02687 FtsX-like permease family E3E12_00680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3E12_00680 PF03129 Anticodon binding domain E3E12_00685 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain E3E12_00685 PF17770 Ribonuclease J C-terminal domain E3E12_00685 PF12706 Beta-lactamase superfamily domain E3E12_00690 PF03309 Type III pantothenate kinase E3E12_00705 PF00216 Bacterial DNA-binding protein E3E12_00710 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3E12_00710 PF00004 ATPase family associated with various cellular activities (AAA) E3E12_00710 PF05362 Lon protease (S16) C-terminal proteolytic domain E3E12_00715 PF07724 AAA domain (Cdc48 subfamily) E3E12_00715 PF10431 C-terminal, D2-small domain, of ClpB protein E3E12_00715 PF06689 ClpX C4-type zinc finger E3E12_00720 PF00574 Clp protease E3E12_00725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3E12_00725 PF05698 Bacterial trigger factor protein (TF) C-terminus E3E12_00725 PF05697 Bacterial trigger factor protein (TF) E3E12_00735 PF01256 Carbohydrate kinase E3E12_00735 PF03853 YjeF-related protein N-terminus E3E12_00745 PF00271 Helicase conserved C-terminal domain E3E12_00745 PF00270 DEAD/DEAH box helicase E3E12_00750 PF01938 TRAM domain E3E12_00750 PF05958 tRNA (Uracil-5-)-methyltransferase E3E12_00755 PF01883 Iron-sulfur cluster assembly protein E3E12_00760 PF00266 Aminotransferase class-V E3E12_00765 PF01458 Uncharacterized protein family (UPF0051) E3E12_00770 PF00005 ABC transporter E3E12_00775 PF01458 Uncharacterized protein family (UPF0051) E3E12_00780 PF02082 Transcriptional regulator E3E12_00785 PF04286 Protein of unknown function (DUF445) E3E12_00795 PF00654 Voltage gated chloride channel E3E12_00800 PF00654 Voltage gated chloride channel E3E12_00805 PF03144 Elongation factor Tu domain 2 E3E12_00805 PF03764 Elongation factor G, domain IV E3E12_00805 PF00009 Elongation factor Tu GTP binding domain E3E12_00805 PF14492 Elongation Factor G, domain II E3E12_00805 PF00679 Elongation factor G C-terminus E3E12_00810 PF00830 Ribosomal L28 family E3E12_00815 PF00005 ABC transporter E3E12_00815 PF00664 ABC transporter transmembrane region E3E12_00825 PF01594 AI-2E family transporter E3E12_00840 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3E12_00840 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3E12_00845 PF02504 Fatty acid synthesis protein E3E12_00850 PF01783 Ribosomal L32p protein family E3E12_00865 PF01165 Ribosomal protein S21 E3E12_00875 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_00880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3E12_00880 PF03466 LysR substrate binding domain E3E12_00885 PF05443 ROS/MUCR transcriptional regulator protein E3E12_00890 PF04632 Fusaric acid resistance protein family E3E12_00900 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system E3E12_00925 PF13356 Arm DNA-binding domain E3E12_00925 PF00589 Phage integrase family E3E12_00935 PF00829 Ribosomal prokaryotic L21 protein E3E12_00940 PF01016 Ribosomal L27 protein E3E12_00945 PF01926 50S ribosome-binding GTPase E3E12_00945 PF01018 GTP1/OBG E3E12_00950 PF00696 Amino acid kinase family E3E12_00950 PF01472 PUA domain E3E12_00955 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) E3E12_00960 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain E3E12_00960 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain E3E12_00975 PF01795 MraW methylase family E3E12_00985 PF00905 Penicillin binding protein transpeptidase domain E3E12_00985 PF03717 Penicillin-binding Protein dimerisation domain E3E12_00990 PF08245 Mur ligase middle domain E3E12_00990 PF02875 Mur ligase family, glutamate ligase domain E3E12_00990 PF01225 Mur ligase family, catalytic domain E3E12_00995 PF01225 Mur ligase family, catalytic domain E3E12_00995 PF02875 Mur ligase family, glutamate ligase domain E3E12_00995 PF08245 Mur ligase middle domain E3E12_01000 PF00953 Glycosyl transferase family 4 E3E12_01005 PF08245 Mur ligase middle domain E3E12_01005 PF02875 Mur ligase family, glutamate ligase domain E3E12_01010 PF01098 Cell cycle protein E3E12_01015 PF03033 Glycosyltransferase family 28 N-terminal domain E3E12_01015 PF04101 Glycosyltransferase family 28 C-terminal domain E3E12_01020 PF02875 Mur ligase family, glutamate ligase domain E3E12_01020 PF01225 Mur ligase family, catalytic domain E3E12_01020 PF08245 Mur ligase middle domain E3E12_01025 PF01565 FAD binding domain E3E12_01025 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3E12_01030 PF01820 D-ala D-ala ligase N-terminus E3E12_01030 PF07478 D-ala D-ala ligase C-terminus E3E12_01035 PF03799 Cell division protein FtsQ E3E12_01035 PF08478 POTRA domain, FtsQ-type E3E12_01040 PF02491 SHS2 domain inserted in FTSA E3E12_01045 PF00091 Tubulin/FtsZ family, GTPase domain E3E12_01045 PF12327 FtsZ family, C-terminal domain E3E12_01050 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3E12_01060 PF13476 AAA domain E3E12_01060 PF02463 RecF/RecN/SMC N terminal domain E3E12_01065 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3E12_01065 PF03120 NAD-dependent DNA ligase OB-fold domain E3E12_01065 PF01653 NAD-dependent DNA ligase adenylation domain E3E12_01065 PF00533 BRCA1 C Terminus (BRCT) domain E3E12_01065 PF12826 Helix-hairpin-helix motif E3E12_01070 PF00571 CBS domain E3E12_01070 PF01595 Cyclin M transmembrane N-terminal domain E3E12_01070 PF03471 Transporter associated domain E3E12_01090 PF00156 Phosphoribosyl transferase domain E3E12_01100 PF00075 RNase H E3E12_01105 PF01636 Phosphotransferase enzyme family E3E12_01110 PF02401 LytB protein E3E12_01150 PF01245 Ribosomal protein L19 E3E12_01155 PF01746 tRNA (Guanine-1)-methyltransferase E3E12_01160 PF01782 RimM N-terminal domain E3E12_01165 PF00886 Ribosomal protein S16 E3E12_01170 PF02881 SRP54-type protein, helical bundle domain E3E12_01170 PF00448 SRP54-type protein, GTPase domain E3E12_01170 PF02978 Signal peptide binding domain E3E12_01180 PF12161 HsdM N-terminal domain E3E12_01180 PF02384 N-6 DNA Methylase E3E12_01185 PF01420 Type I restriction modification DNA specificity domain E3E12_01190 PF11867 Domain of unknown function (DUF3387) E3E12_01190 PF18766 SWI2/SNF2 ATPase E3E12_01190 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E3E12_01210 PF00892 EamA-like transporter family E3E12_01235 PF07690 Major Facilitator Superfamily E3E12_01240 PF14710 Respiratory nitrate reductase alpha N-terminal E3E12_01240 PF01568 Molydopterin dinucleotide binding domain E3E12_01240 PF00384 Molybdopterin oxidoreductase E3E12_01245 PF13247 4Fe-4S dicluster domain E3E12_01245 PF14711 Respiratory nitrate reductase beta C-terminal E3E12_01250 PF02613 Nitrate reductase delta subunit E3E12_01255 PF02665 Nitrate reductase gamma subunit E3E12_01260 PF00881 Nitroreductase family E3E12_01265 PF00730 HhH-GPD superfamily base excision DNA repair protein E3E12_01275 PF00270 DEAD/DEAH box helicase E3E12_01275 PF00271 Helicase conserved C-terminal domain E3E12_01280 PF00881 Nitroreductase family E3E12_01300 PF13277 YmdB-like protein E3E12_01305 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3E12_01330 PF02581 Thiamine monophosphate synthase E3E12_01340 PF00152 tRNA synthetases class II (D, K and N) E3E12_01345 PF12544 Lysine-2,3-aminomutase E3E12_01345 PF04055 Radical SAM superfamily E3E12_01355 PF09285 Elongation factor P, C-terminal E3E12_01355 PF08207 Elongation factor P (EF-P) KOW-like domain E3E12_01355 PF01132 Elongation factor P (EF-P) OB domain E3E12_01360 PF00459 Inositol monophosphatase family E3E12_01370 PF06421 GTP-binding protein LepA C-terminus E3E12_01370 PF03144 Elongation factor Tu domain 2 E3E12_01370 PF00679 Elongation factor G C-terminus E3E12_01370 PF00009 Elongation factor Tu GTP binding domain E3E12_01380 PF02609 Exonuclease VII small subunit E3E12_01385 PF00348 Polyprenyl synthetase E3E12_01390 PF02779 Transketolase, pyrimidine binding domain E3E12_01390 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3E12_01390 PF02780 Transketolase, C-terminal domain E3E12_01395 PF01728 FtsJ-like methyltransferase E3E12_01395 PF01479 S4 domain E3E12_01400 PF04055 Radical SAM superfamily E3E12_01410 PF00764 Arginosuccinate synthase E3E12_01415 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3E12_01415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3E12_01420 PF00579 tRNA synthetases class I (W and Y) E3E12_01430 PF07728 AAA domain (dynein-related subfamily) E3E12_01430 PF12102 Domain of unknown function (DUF3578) E3E12_01435 PF02684 Lipid-A-disaccharide synthetase E3E12_01440 PF01588 Putative tRNA binding domain E3E12_01440 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3E12_01440 PF03484 tRNA synthetase B5 domain E3E12_01440 PF03483 B3/4 domain E3E12_01440 PF03147 Ferredoxin-fold anticodon binding domain E3E12_01445 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3E12_01445 PF01409 tRNA synthetases class II core domain (F) E3E12_01450 PF00453 Ribosomal protein L20 E3E12_01455 PF01632 Ribosomal protein L35 E3E12_01465 PF02657 Fe-S metabolism associated domain E3E12_01490 PF01553 Acyltransferase E3E12_01500 PF02445 Quinolinate synthetase A protein E3E12_01505 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3E12_01505 PF00753 Metallo-beta-lactamase superfamily E3E12_01510 PF02666 Phosphatidylserine decarboxylase E3E12_01515 PF01066 CDP-alcohol phosphatidyltransferase E3E12_01525 PF00883 Cytosol aminopeptidase family, catalytic domain E3E12_01525 PF02789 Cytosol aminopeptidase family, N-terminal domain E3E12_01530 PF00459 Inositol monophosphatase family E3E12_01535 PF01300 Telomere recombination E3E12_01535 PF03481 Putative GTP-binding controlling metal-binding E3E12_01555 PF00639 PPIC-type PPIASE domain E3E12_01555 PF09312 SurA N-terminal domain E3E12_01560 PF00398 Ribosomal RNA adenine dimethylase E3E12_01590 PF01281 Ribosomal protein L9, N-terminal domain E3E12_01590 PF03948 Ribosomal protein L9, C-terminal domain E3E12_01595 PF01084 Ribosomal protein S18 E3E12_01600 PF01250 Ribosomal protein S6 E3E12_01605 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E3E12_01605 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E3E12_01610 PF02910 Fumarate reductase flavoprotein C-term E3E12_01610 PF00890 FAD binding domain E3E12_01615 PF02445 Quinolinate synthetase A protein E3E12_01625 PF04546 Sigma-70, non-essential region E3E12_01625 PF04545 Sigma-70, region 4 E3E12_01625 PF00140 Sigma-70 factor, region 1.2 E3E12_01625 PF04542 Sigma-70 region 2 E3E12_01625 PF04539 Sigma-70 region 3 E3E12_01625 PF03979 Sigma-70 factor, region 1.1 E3E12_01630 PF08278 DNA primase DnaG DnaB-binding E3E12_01630 PF01807 CHC2 zinc finger E3E12_01630 PF08275 DNA primase catalytic core, N-terminal domain E3E12_01630 PF10410 DnaB-helicase binding domain of primase E3E12_01640 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3E12_01640 PF00117 Glutamine amidotransferase class-I E3E12_01645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3E12_01645 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3E12_01645 PF02142 MGS-like domain E3E12_01650 PF01272 Transcription elongation factor, GreA/GreB, C-term E3E12_01650 PF03449 Transcription elongation factor, N-terminal E3E12_01660 PF04055 Radical SAM superfamily E3E12_01665 PF01641 SelR domain E3E12_01675 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E3E12_01675 PF01676 Metalloenzyme superfamily E3E12_01685 PF04632 Fusaric acid resistance protein family E3E12_01690 PF03572 Peptidase family S41 E3E12_01690 PF13180 PDZ domain E3E12_01695 PF00293 NUDIX domain E3E12_01700 PF00664 ABC transporter transmembrane region E3E12_01700 PF00005 ABC transporter E3E12_01705 PF12627 Probable RNA and SrmB- binding site of polymerase A E3E12_01705 PF01743 Poly A polymerase head domain E3E12_01705 PF13735 tRNA nucleotidyltransferase domain 2 putative E3E12_01710 PF17863 AAA lid domain E3E12_01710 PF07726 ATPase family associated with various cellular activities (AAA) E3E12_01735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3E12_01735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3E12_01740 PF18755 Restriction Enzyme Adenine Methylase Associated E3E12_01740 PF01555 DNA methylase E3E12_01745 PF01351 Ribonuclease HII E3E12_01765 PF13533 Biotin-lipoyl like E3E12_01770 PF00873 AcrB/AcrD/AcrF family E3E12_01775 PF00873 AcrB/AcrD/AcrF family E3E12_01780 PF02321 Outer membrane efflux protein E3E12_01790 PF01196 Ribosomal protein L17 E3E12_01795 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3E12_01795 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3E12_01795 PF01000 RNA polymerase Rpb3/RpoA insert domain E3E12_01800 PF00411 Ribosomal protein S11 E3E12_01805 PF00416 Ribosomal protein S13/S18 E3E12_01810 PF05191 Adenylate kinase, active site lid E3E12_01815 PF00344 SecY translocase E3E12_01820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3E12_01825 PF00327 Ribosomal protein L30p/L7e E3E12_01830 PF03719 Ribosomal protein S5, C-terminal domain E3E12_01830 PF00333 Ribosomal protein S5, N-terminal domain E3E12_01835 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3E12_01840 PF00347 Ribosomal protein L6 E3E12_01845 PF00410 Ribosomal protein S8 E3E12_01850 PF00253 Ribosomal protein S14p/S29e E3E12_01855 PF00673 ribosomal L5P family C-terminus E3E12_01855 PF00281 Ribosomal protein L5 E3E12_01860 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3E12_01865 PF00238 Ribosomal protein L14p/L23e E3E12_01870 PF00366 Ribosomal protein S17 E3E12_01875 PF00831 Ribosomal L29 protein E3E12_01880 PF00252 Ribosomal protein L16p/L10e E3E12_01885 PF07650 KH domain E3E12_01885 PF00189 Ribosomal protein S3, C-terminal domain E3E12_01890 PF00237 Ribosomal protein L22p/L17e E3E12_01895 PF00203 Ribosomal protein S19 E3E12_01900 PF03947 Ribosomal Proteins L2, C-terminal domain E3E12_01900 PF00181 Ribosomal Proteins L2, RNA binding domain E3E12_01905 PF00276 Ribosomal protein L23 E3E12_01910 PF00573 Ribosomal protein L4/L1 family E3E12_01915 PF00297 Ribosomal protein L3 E3E12_01920 PF00338 Ribosomal protein S10p/S20e E3E12_01925 PF00009 Elongation factor Tu GTP binding domain E3E12_01925 PF03143 Elongation factor Tu C-terminal domain E3E12_01925 PF03144 Elongation factor Tu domain 2 E3E12_01930 PF00177 Ribosomal protein S7p/S5e E3E12_01935 PF00164 Ribosomal protein S12/S23 E3E12_01940 PF04983 RNA polymerase Rpb1, domain 3 E3E12_01940 PF04997 RNA polymerase Rpb1, domain 1 E3E12_01940 PF00623 RNA polymerase Rpb1, domain 2 E3E12_01940 PF05000 RNA polymerase Rpb1, domain 4 E3E12_01940 PF04998 RNA polymerase Rpb1, domain 5 E3E12_01945 PF04563 RNA polymerase beta subunit E3E12_01945 PF04560 RNA polymerase Rpb2, domain 7 E3E12_01945 PF04561 RNA polymerase Rpb2, domain 2 E3E12_01945 PF04565 RNA polymerase Rpb2, domain 3 E3E12_01945 PF10385 RNA polymerase beta subunit external 1 domain E3E12_01945 PF00562 RNA polymerase Rpb2, domain 6 E3E12_01955 PF00542 Ribosomal protein L7/L12 C-terminal domain E3E12_01955 PF16320 Ribosomal protein L7/L12 dimerisation domain E3E12_01960 PF00466 Ribosomal protein L10 E3E12_01965 PF00687 Ribosomal protein L1p/L10e family E3E12_01970 PF00298 Ribosomal protein L11, RNA binding domain E3E12_01970 PF03946 Ribosomal protein L11, N-terminal domain E3E12_01975 PF02321 Outer membrane efflux protein E3E12_01985 PF00873 AcrB/AcrD/AcrF family E3E12_01995 PF00486 Transcriptional regulatory protein, C terminal E3E12_01995 PF00072 Response regulator receiver domain E3E12_02010 PF02321 Outer membrane efflux protein E3E12_02015 PF13977 BetI-type transcriptional repressor, C-terminal E3E12_02015 PF00440 Bacterial regulatory proteins, tetR family E3E12_02020 PF07690 Major Facilitator Superfamily E3E12_02025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3E12_02025 PF00529 HlyD membrane-fusion protein of T1SS E3E12_02030 PF00248 Aldo/keto reductase family E3E12_02040 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3E12_02040 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3E12_02045 PF01212 Beta-eliminating lyase E3E12_02055 PF13180 PDZ domain E3E12_02070 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3E12_02080 PF01741 Large-conductance mechanosensitive channel, MscL E3E12_02110 PF00149 Calcineurin-like phosphoesterase E3E12_02125 PF01180 Dihydroorotate dehydrogenase E3E12_02140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3E12_02195 PF00300 Histidine phosphatase superfamily (branch 1) E3E12_02215 PF04632 Fusaric acid resistance protein family E3E12_02220 PF01230 HIT domain E3E12_02235 PF14437 MafB19-like deaminase E3E12_02245 PF13417 Glutathione S-transferase, N-terminal domain E3E12_02245 PF00043 Glutathione S-transferase, C-terminal domain E3E12_02250 PF05209 Septum formation inhibitor MinC, N-terminal domain E3E12_02250 PF03775 Septum formation inhibitor MinC, C-terminal domain E3E12_02260 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3E12_02265 PF03776 Septum formation topological specificity factor MinE E3E12_02300 PF01810 LysE type translocator E3E12_02315 PF09615 CRISPR-associated protein (Cas_Csy3) E3E12_02330 PF18019 HD domain E3E12_02335 PF01867 CRISPR associated protein Cas1 E3E12_02340 PF00270 DEAD/DEAH box helicase E3E12_02340 PF08494 DEAD/H associated E3E12_02340 PF00271 Helicase conserved C-terminal domain E3E12_02350 PF01494 FAD binding domain E3E12_02360 PF01810 LysE type translocator E3E12_02375 PF00475 Imidazoleglycerol-phosphate dehydratase E3E12_02380 PF00117 Glutamine amidotransferase class-I E3E12_02425 PF08264 Anticodon-binding domain of tRNA E3E12_02425 PF13603 Leucyl-tRNA synthetase, Domain 2 E3E12_02425 PF00133 tRNA synthetases class I (I, L, M and V) E3E12_02445 PF01936 NYN domain E3E12_02450 PF00313 'Cold-shock' DNA-binding domain E3E12_02455 PF01479 S4 domain E3E12_02455 PF00849 RNA pseudouridylate synthase E3E12_02465 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3E12_02465 PF17854 FtsK alpha domain E3E12_02465 PF01580 FtsK/SpoIIIE family E3E12_02465 PF09397 Ftsk gamma domain E3E12_02470 PF00849 RNA pseudouridylate synthase E3E12_02495 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_02495 PF00107 Zinc-binding dehydrogenase E3E12_02500 PF00756 Putative esterase E3E12_02505 PF04828 Glutathione-dependent formaldehyde-activating enzyme E3E12_02510 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_02515 PF12951 Passenger-associated-transport-repeat E3E12_02525 PF12951 Passenger-associated-transport-repeat E3E12_02535 PF00313 'Cold-shock' DNA-binding domain E3E12_02545 PF01965 DJ-1/PfpI family E3E12_02565 PF01625 Peptide methionine sulfoxide reductase E3E12_02585 PF02082 Transcriptional regulator E3E12_02590 PF08274 PhnA Zinc-Ribbon E3E12_02590 PF03831 PhnA domain E3E12_02600 PF00977 Histidine biosynthesis protein E3E12_02605 PF00977 Histidine biosynthesis protein E3E12_02610 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E3E12_02620 PF02567 Phenazine biosynthesis-like protein E3E12_02635 PF09278 MerR, DNA binding E3E12_02635 PF00376 MerR family regulatory protein E3E12_02660 PF00384 Molybdopterin oxidoreductase E3E12_02660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3E12_02660 PF01568 Molydopterin dinucleotide binding domain E3E12_02665 PF09163 Formate dehydrogenase N, transmembrane E3E12_02665 PF12800 4Fe-4S binding domain E3E12_02665 PF13247 4Fe-4S dicluster domain E3E12_02670 PF01292 Prokaryotic cytochrome b561 E3E12_02675 PF04216 Protein involved in formate dehydrogenase formation E3E12_02695 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E3E12_02695 PF00355 Rieske [2Fe-2S] domain E3E12_02700 PF00033 Cytochrome b/b6/petB E3E12_02700 PF00032 Cytochrome b(C-terminal)/b6/petD E3E12_02705 PF00033 Cytochrome b/b6/petB E3E12_02705 PF02167 Cytochrome C1 family E3E12_02705 PF00032 Cytochrome b(C-terminal)/b6/petD E3E12_02715 PF00248 Aldo/keto reductase family E3E12_02720 PF00486 Transcriptional regulatory protein, C terminal E3E12_02720 PF00072 Response regulator receiver domain E3E12_02725 PF07689 KaiB domain E3E12_02725 PF00512 His Kinase A (phospho-acceptor) domain E3E12_02725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E12_02740 PF13180 PDZ domain E3E12_02745 PF00270 DEAD/DEAH box helicase E3E12_02745 PF04408 Helicase associated domain (HA2) E3E12_02745 PF00271 Helicase conserved C-terminal domain E3E12_02745 PF08482 ATP-dependent helicase C-terminal E3E12_02750 PF00156 Phosphoribosyl transferase domain E3E12_02755 PF07690 Major Facilitator Superfamily E3E12_02760 PF07690 Major Facilitator Superfamily E3E12_02765 PF03641 Possible lysine decarboxylase E3E12_02770 PF00171 Aldehyde dehydrogenase family E3E12_02775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3E12_02775 PF03466 LysR substrate binding domain E3E12_02780 PF07690 Major Facilitator Superfamily E3E12_02785 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3E12_02790 PF00692 dUTPase E3E12_02810 PF00534 Glycosyl transferases group 1 E3E12_02810 PF13439 Glycosyltransferase Family 4 E3E12_02820 PF00012 Hsp70 protein E3E12_02825 PF01556 DnaJ C terminal domain E3E12_02825 PF00226 DnaJ domain E3E12_02825 PF00684 DnaJ central domain E3E12_02830 PF05173 Dihydrodipicolinate reductase, C-terminus E3E12_02830 PF01113 Dihydrodipicolinate reductase, N-terminus E3E12_02840 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3E12_02840 PF02772 S-adenosylmethionine synthetase, central domain E3E12_02840 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3E12_02845 PF02390 Putative methyltransferase E3E12_02855 PF01012 Electron transfer flavoprotein domain E3E12_02860 PF01012 Electron transfer flavoprotein domain E3E12_02860 PF00766 Electron transfer flavoprotein FAD-binding domain E3E12_02870 PF00762 Ferrochelatase E3E12_02875 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3E12_02875 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3E12_02885 PF16078 2-oxoglutarate dehydrogenase N-terminus E3E12_02885 PF00676 Dehydrogenase E1 component E3E12_02885 PF16870 2-oxoglutarate dehydrogenase C-terminal E3E12_02885 PF02779 Transketolase, pyrimidine binding domain E3E12_02890 PF00291 Pyridoxal-phosphate dependent enzyme E3E12_02895 PF00290 Tryptophan synthase alpha chain E3E12_02905 PF01039 Carboxyl transferase domain E3E12_02905 PF17848 Acetyl-coA carboxylase zinc finger domain E3E12_02910 PF08245 Mur ligase middle domain E3E12_02910 PF02875 Mur ligase family, glutamate ligase domain E3E12_02915 PF03796 DnaB-like helicase C terminal domain E3E12_02915 PF00772 DnaB-like helicase N terminal domain E3E12_02945 PF12146 Serine aminopeptidase, S33 E3E12_02950 PF00440 Bacterial regulatory proteins, tetR family E3E12_02955 PF01725 Ham1 family E3E12_02960 PF03725 3' exoribonuclease family, domain 2 E3E12_02960 PF01138 3' exoribonuclease family, domain 1 E3E12_02965 PF17092 Penicillin-binding protein OB-like domain E3E12_02965 PF00912 Transglycosylase E3E12_02965 PF00905 Penicillin binding protein transpeptidase domain E3E12_02970 PF03462 PCRF domain E3E12_02970 PF00472 RF-1 domain E3E12_02985 PF01618 MotA/TolQ/ExbB proton channel family E3E12_02990 PF02472 Biopolymer transport protein ExbD/TolR E3E12_02995 PF02472 Biopolymer transport protein ExbD/TolR E3E12_03005 PF00924 Mechanosensitive ion channel E3E12_03020 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E3E12_03035 PF00664 ABC transporter transmembrane region E3E12_03035 PF00005 ABC transporter E3E12_03040 PF00005 ABC transporter E3E12_03040 PF00664 ABC transporter transmembrane region E3E12_03045 PF01654 Cytochrome bd terminal oxidase subunit I E3E12_03050 PF02322 Cytochrome bd terminal oxidase subunit II E3E12_03060 PF00324 Amino acid permease E3E12_03065 PF00909 Ammonium Transporter Family E3E12_03070 PF03180 NLPA lipoprotein E3E12_03075 PF03180 NLPA lipoprotein E3E12_03080 PF00005 ABC transporter E3E12_03080 PF09383 NIL domain E3E12_03085 PF00528 Binding-protein-dependent transport system inner membrane component E3E12_03120 PF02525 Flavodoxin-like fold E3E12_03130 PF00440 Bacterial regulatory proteins, tetR family E3E12_03140 PF00698 Acyl transferase domain E3E12_03140 PF02801 Beta-ketoacyl synthase, C-terminal domain E3E12_03140 PF14765 Polyketide synthase dehydratase E3E12_03140 PF00109 Beta-ketoacyl synthase, N-terminal domain E3E12_03140 PF00550 Phosphopantetheine attachment site E3E12_03140 PF08659 KR domain E3E12_03140 PF16197 Ketoacyl-synthetase C-terminal extension E3E12_03140 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_03155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3E12_03160 PF01467 Cytidylyltransferase-like E3E12_03165 PF03989 DNA gyrase C-terminal domain, beta-propeller E3E12_03165 PF00521 DNA gyrase/topoisomerase IV, subunit A E3E12_03170 PF04715 Anthranilate synthase component I, N terminal region E3E12_03170 PF00425 chorismate binding enzyme E3E12_03175 PF01063 Amino-transferase class IV E3E12_03185 PF00326 Prolyl oligopeptidase family E3E12_03185 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3E12_03190 PF00107 Zinc-binding dehydrogenase E3E12_03190 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_03200 PF00444 Ribosomal protein L36 E3E12_03215 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3E12_03215 PF17764 3′ DNA-binding domain (3′BD) E3E12_03215 PF00270 DEAD/DEAH box helicase E3E12_03215 PF18074 Primosomal protein N C-terminal domain E3E12_03230 PF00199 Catalase E3E12_03230 PF06628 Catalase-related immune-responsive E3E12_03235 PF00857 Isochorismatase family E3E12_03255 PF06508 Queuosine biosynthesis protein QueC E3E12_03270 PF03313 Serine dehydratase alpha chain E3E12_03270 PF03315 Serine dehydratase beta chain E3E12_03275 PF18395 Cas3 C-terminal domain E3E12_03275 PF18019 HD domain E3E12_03305 PF01867 CRISPR associated protein Cas1 E3E12_03325 PF00180 Isocitrate/isopropylmalate dehydrogenase E3E12_03330 PF00285 Citrate synthase, C-terminal domain E3E12_03335 PF00694 Aconitase C-terminal domain E3E12_03335 PF00330 Aconitase family (aconitate hydratase) E3E12_03350 PF00593 TonB dependent receptor E3E12_03350 PF07715 TonB-dependent Receptor Plug Domain E3E12_03355 PF03929 PepSY-associated TM region E3E12_03360 PF01227 GTP cyclohydrolase I E3E12_03365 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3E12_03370 PF00809 Pterin binding enzyme E3E12_03390 PF00154 recA bacterial DNA recombination protein E3E12_03400 PF00574 Clp protease E3E12_03410 PF00742 Homoserine dehydrogenase E3E12_03410 PF03447 Homoserine dehydrogenase, NAD binding domain E3E12_03410 PF01842 ACT domain E3E12_03415 PF02272 DHHA1 domain E3E12_03415 PF01368 DHH family E3E12_03415 PF17768 RecJ OB domain E3E12_03415 PF10141 Single-strand DNA-specific exonuclease, C terminal domain E3E12_03430 PF05159 Capsule polysaccharide biosynthesis protein E3E12_03435 PF05159 Capsule polysaccharide biosynthesis protein E3E12_03440 PF00534 Glycosyl transferases group 1 E3E12_03440 PF13439 Glycosyltransferase Family 4 E3E12_03450 PF01050 Mannose-6-phosphate isomerase E3E12_03450 PF00483 Nucleotidyl transferase E3E12_03455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3E12_03455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3E12_03455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3E12_03455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3E12_03460 PF00005 ABC transporter E3E12_03465 PF01061 ABC-2 type transporter E3E12_03480 PF00534 Glycosyl transferases group 1 E3E12_03480 PF13439 Glycosyltransferase Family 4 E3E12_03495 PF02563 Polysaccharide biosynthesis/export protein E3E12_03510 PF09330 D-lactate dehydrogenase, membrane binding E3E12_03510 PF01565 FAD binding domain E3E12_03515 PF08676 MutL C terminal dimerisation domain E3E12_03515 PF01119 DNA mismatch repair protein, C-terminal domain E3E12_03525 PF01252 Signal peptidase (SPase) II E3E12_03530 PF06827 Zinc finger found in FPG and IleRS E3E12_03530 PF00133 tRNA synthetases class I (I, L, M and V) E3E12_03530 PF08264 Anticodon-binding domain of tRNA E3E12_03535 PF06574 FAD synthetase E3E12_03535 PF01687 Riboflavin kinase E3E12_03540 PF02416 mttA/Hcf106 family E3E12_03555 PF00202 Aminotransferase class-III E3E12_03560 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3E12_03560 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3E12_03565 PF01430 Hsp33 protein E3E12_03575 PF00732 GMC oxidoreductase E3E12_03575 PF05199 GMC oxidoreductase E3E12_03580 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3E12_03580 PF00034 Cytochrome c E3E12_03585 PF02082 Transcriptional regulator E3E12_03590 PF00291 Pyridoxal-phosphate dependent enzyme E3E12_03595 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3E12_03600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3E12_03600 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3E12_03605 PF00231 ATP synthase E3E12_03610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3E12_03610 PF00306 ATP synthase alpha/beta chain, C terminal domain E3E12_03610 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3E12_03615 PF00213 ATP synthase delta (OSCP) subunit E3E12_03635 PF02357 Transcription termination factor nusG E3E12_03635 PF00467 KOW motif E3E12_03645 PF02634 FdhD/NarQ family E3E12_03655 PF02470 MlaD protein E3E12_03660 PF04403 Paraquat-inducible protein A E3E12_03675 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_03675 PF13192 Thioredoxin domain E3E12_03680 PF00578 AhpC/TSA family E3E12_03685 PF03466 LysR substrate binding domain E3E12_03685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3E12_03695 PF00111 2Fe-2S iron-sulfur cluster binding domain E3E12_03700 PF00266 Aminotransferase class-V E3E12_03705 PF00266 Aminotransferase class-V E3E12_03720 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E3E12_03725 PF00579 tRNA synthetases class I (W and Y) E3E12_03735 PF00834 Ribulose-phosphate 3 epimerase family E3E12_03760 PF02321 Outer membrane efflux protein E3E12_03765 PF00873 AcrB/AcrD/AcrF family E3E12_03770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3E12_03770 PF00529 HlyD membrane-fusion protein of T1SS E3E12_03775 PF00324 Amino acid permease E3E12_03780 PF01895 PhoU domain E3E12_03785 PF00005 ABC transporter E3E12_03790 PF00528 Binding-protein-dependent transport system inner membrane component E3E12_03795 PF00528 Binding-protein-dependent transport system inner membrane component E3E12_03805 PF00155 Aminotransferase class I and II E3E12_03815 PF13649 Methyltransferase domain E3E12_03820 PF13649 Methyltransferase domain E3E12_03830 PF00753 Metallo-beta-lactamase superfamily E3E12_03840 PF02590 Predicted SPOUT methyltransferase E3E12_03850 PF01467 Cytidylyltransferase-like E3E12_03855 PF00171 Aldehyde dehydrogenase family E3E12_03860 PF06071 Protein of unknown function (DUF933) E3E12_03860 PF01926 50S ribosome-binding GTPase E3E12_03865 PF01195 Peptidyl-tRNA hydrolase E3E12_03870 PF01386 Ribosomal L25p family E3E12_03870 PF14693 Ribosomal protein TL5, C-terminal domain E3E12_03880 PF01790 Prolipoprotein diacylglyceryl transferase E3E12_03885 PF01370 NAD dependent epimerase/dehydratase family E3E12_03895 PF03807 NADP oxidoreductase coenzyme F420-dependent E3E12_03895 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3E12_03915 PF02540 NAD synthase E3E12_03915 PF00795 Carbon-nitrogen hydrolase E3E12_03945 PF00119 ATP synthase A chain E3E12_03950 PF00137 ATP synthase subunit C E3E12_03955 PF00430 ATP synthase B/B' CF(0) E3E12_03960 PF00430 ATP synthase B/B' CF(0) E3E12_03965 PF00535 Glycosyl transferase family 2 E3E12_03975 PF07690 Major Facilitator Superfamily E3E12_03985 PF05221 S-adenosyl-L-homocysteine hydrolase E3E12_03985 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain E3E12_03995 PF02817 e3 binding domain E3E12_03995 PF00364 Biotin-requiring enzyme E3E12_03995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3E12_04000 PF07497 Rho termination factor, RNA-binding domain E3E12_04000 PF07498 Rho termination factor, N-terminal domain E3E12_04000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3E12_04020 PF13520 Amino acid permease E3E12_04025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3E12_04025 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3E12_04030 PF01926 50S ribosome-binding GTPase E3E12_04030 PF12631 MnmE helical domain E3E12_04030 PF10396 GTP-binding protein TrmE N-terminus E3E12_04035 PF01134 Glucose inhibited division protein A E3E12_04035 PF13932 GidA associated domain E3E12_04040 PF02527 rRNA small subunit methyltransferase G E3E12_04045 PF13614 AAA domain E3E12_04050 PF17762 HTH domain found in ParB protein E3E12_04050 PF02195 ParB-like nuclease domain E3E12_04070 PF00534 Glycosyl transferases group 1 E3E12_04070 PF13579 Glycosyl transferase 4-like domain E3E12_04080 PF13579 Glycosyl transferase 4-like domain E3E12_04080 PF00534 Glycosyl transferases group 1 E3E12_04090 PF00535 Glycosyl transferase family 2 E3E12_04100 PF00884 Sulfatase E3E12_04120 PF01943 Polysaccharide biosynthesis protein E3E12_04135 PF00005 ABC transporter E3E12_04145 PF00781 Diacylglycerol kinase catalytic domain E3E12_04155 PF02545 Maf-like protein E3E12_04160 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3E12_04170 PF09335 SNARE associated Golgi protein E3E12_04175 PF00326 Prolyl oligopeptidase family E3E12_04180 PF01554 MatE E3E12_04200 PF07732 Multicopper oxidase E3E12_04200 PF07731 Multicopper oxidase E3E12_04200 PF00394 Multicopper oxidase E3E12_04205 PF05275 Copper resistance protein B precursor (CopB) E3E12_04210 PF06965 Na+/H+ antiporter 1 E3E12_04215 PF00183 Hsp90 protein E3E12_04240 PF00149 Calcineurin-like phosphoesterase E3E12_04245 PF13593 SBF-like CPA transporter family (DUF4137) E3E12_04250 PF00251 Glycosyl hydrolases family 32 N-terminal domain E3E12_04250 PF08244 Glycosyl hydrolases family 32 C terminal E3E12_04255 PF00248 Aldo/keto reductase family E3E12_04270 PF03884 DNA gyrase inhibitor YacG E3E12_04275 PF10150 Ribonuclease E/G family E3E12_04275 PF00575 S1 RNA binding domain E3E12_04275 PF12111 Polyribonucleotide phosphorylase C terminal E3E12_04280 PF02545 Maf-like protein E3E12_04285 PF01176 Translation initiation factor 1A / IF-1 E3E12_04300 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3E12_04300 PF14572 Phosphoribosyl synthetase-associated domain E3E12_04305 PF00300 Histidine phosphatase superfamily (branch 1) E3E12_04315 PF00873 AcrB/AcrD/AcrF family E3E12_04330 PF13545 Crp-like helix-turn-helix domain E3E12_04330 PF00027 Cyclic nucleotide-binding domain E3E12_04340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3E12_04340 PF01872 RibD C-terminal domain E3E12_04345 PF00677 Lumazine binding domain E3E12_04350 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3E12_04350 PF00925 GTP cyclohydrolase II E3E12_04355 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3E12_04360 PF00625 Guanylate kinase E3E12_04365 PF01634 ATP phosphoribosyltransferase E3E12_04370 PF00815 Histidinol dehydrogenase E3E12_04375 PF00561 alpha/beta hydrolase fold E3E12_04380 PF00107 Zinc-binding dehydrogenase E3E12_04380 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_04385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3E12_04385 PF00205 Thiamine pyrophosphate enzyme, central domain E3E12_04385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3E12_04395 PF14815 NUDIX domain E3E12_04395 PF00730 HhH-GPD superfamily base excision DNA repair protein E3E12_04395 PF00633 Helix-hairpin-helix motif E3E12_04405 PF18429 Domain of unknown function (DUF5609) E3E12_04420 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3E12_04420 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3E12_04425 PF02548 Ketopantoate hydroxymethyltransferase E3E12_04430 PF03992 Antibiotic biosynthesis monooxygenase E3E12_04435 PF00120 Glutamine synthetase, catalytic domain E3E12_04435 PF03951 Glutamine synthetase, beta-Grasp domain E3E12_04450 PF13460 NAD(P)H-binding E3E12_04475 PF01205 Uncharacterized protein family UPF0029 E3E12_04480 PF01810 LysE type translocator E3E12_04485 PF00593 TonB dependent receptor E3E12_04485 PF07715 TonB-dependent Receptor Plug Domain E3E12_04495 PF00210 Ferritin-like domain E3E12_04500 PF07690 Major Facilitator Superfamily E3E12_04505 PF06745 KaiC E3E12_04505 PF18073 Rubredoxin metal binding domain E3E12_04510 PF00005 ABC transporter E3E12_04515 PF02405 Permease MlaE E3E12_04525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3E12_04525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3E12_04525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3E12_04535 PF12849 PBP superfamily domain E3E12_04545 PF02683 Cytochrome C biogenesis protein transmembrane region E3E12_04545 PF11412 Disulphide bond corrector protein DsbC E3E12_04550 PF00563 EAL domain E3E12_04550 PF08448 PAS fold E3E12_04550 PF08447 PAS fold E3E12_04550 PF00990 Diguanylate cyclase, GGDEF domain E3E12_04555 PF00893 Small Multidrug Resistance protein E3E12_04560 PF00005 ABC transporter E3E12_04560 PF17755 UvrA DNA-binding domain E3E12_04560 PF17760 UvrA interaction domain E3E12_04565 PF00436 Single-strand binding protein family E3E12_04600 PF01232 Mannitol dehydrogenase Rossmann domain E3E12_04600 PF08125 Mannitol dehydrogenase C-terminal domain E3E12_04620 PF00248 Aldo/keto reductase family E3E12_04625 PF16363 GDP-mannose 4,6 dehydratase E3E12_04635 PF01464 Transglycosylase SLT domain E3E12_04645 PF05145 Transition state regulatory protein AbrB E3E12_04655 PF01467 Cytidylyltransferase-like E3E12_04655 PF00294 pfkB family carbohydrate kinase E3E12_04675 PF02511 Thymidylate synthase complementing protein E3E12_04685 PF00881 Nitroreductase family E3E12_04705 PF05443 ROS/MUCR transcriptional regulator protein E3E12_04710 PF01475 Ferric uptake regulator family E3E12_04720 PF00795 Carbon-nitrogen hydrolase E3E12_04735 PF03966 Trm112p-like protein E3E12_04750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3E12_04750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3E12_04755 PF04343 Protein of unknown function, DUF488 E3E12_04765 PF00719 Inorganic pyrophosphatase E3E12_04775 PF00005 ABC transporter E3E12_04775 PF12848 ABC transporter E3E12_04785 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3E12_04805 PF13393 Histidyl-tRNA synthetase E3E12_04810 PF00709 Adenylosuccinate synthetase E3E12_04815 PF02881 SRP54-type protein, helical bundle domain E3E12_04815 PF00448 SRP54-type protein, GTPase domain E3E12_04820 PF00919 Uncharacterized protein family UPF0004 E3E12_04820 PF04055 Radical SAM superfamily E3E12_04825 PF01678 Diaminopimelate epimerase E3E12_04845 PF02622 Uncharacterized ACR, COG1678 E3E12_04850 PF10431 C-terminal, D2-small domain, of ClpB protein E3E12_04850 PF02861 Clp amino terminal domain, pathogenicity island component E3E12_04850 PF17871 AAA lid domain E3E12_04850 PF07724 AAA domain (Cdc48 subfamily) E3E12_04850 PF00004 ATPase family associated with various cellular activities (AAA) E3E12_04855 PF02112 cAMP phosphodiesterases class-II E3E12_04865 PF02861 Clp amino terminal domain, pathogenicity island component E3E12_04865 PF17871 AAA lid domain E3E12_04865 PF07724 AAA domain (Cdc48 subfamily) E3E12_04865 PF00004 ATPase family associated with various cellular activities (AAA) E3E12_04865 PF10431 C-terminal, D2-small domain, of ClpB protein E3E12_04870 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3E12_04875 PF00768 D-alanyl-D-alanine carboxypeptidase E3E12_04875 PF07943 Penicillin-binding protein 5, C-terminal domain E3E12_04880 PF00557 Metallopeptidase family M24 E3E12_04895 PF12169 DNA polymerase III subunits gamma and tau domain III E3E12_04895 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3E12_04895 PF12170 DNA polymerase III tau subunit V interacting with alpha E3E12_04900 PF02575 YbaB/EbfC DNA-binding family E3E12_04905 PF13662 Toprim domain E3E12_04905 PF02132 RecR protein E3E12_04925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3E12_04930 PF02224 Cytidylate kinase E3E12_04935 PF00575 S1 RNA binding domain E3E12_04940 PF00675 Insulinase (Peptidase family M16) E3E12_04940 PF05193 Peptidase M16 inactive domain E3E12_04960 PF05198 Translation initiation factor IF-3, N-terminal domain E3E12_04960 PF00707 Translation initiation factor IF-3, C-terminal domain E3E12_04965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3E12_04965 PF02824 TGS domain E3E12_04965 PF03129 Anticodon binding domain E3E12_04965 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3E12_04970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3E12_04975 PF01025 GrpE E3E12_04980 PF00486 Transcriptional regulatory protein, C terminal E3E12_04980 PF00072 Response regulator receiver domain E3E12_04985 PF13756 Stimulus-sensing domain E3E12_04985 PF13755 Sensor N-terminal transmembrane domain E3E12_04985 PF00512 His Kinase A (phospho-acceptor) domain E3E12_04985 PF00672 HAMP domain E3E12_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E12_04990 PF03668 P-loop ATPase protein family E3E12_04995 PF01475 Ferric uptake regulator family E3E12_05000 PF00083 Sugar (and other) transporter E3E12_05005 PF12795 Mechanosensitive ion channel porin domain E3E12_05005 PF00924 Mechanosensitive ion channel E3E12_05005 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3E12_05010 PF01180 Dihydroorotate dehydrogenase E3E12_05020 PF01207 Dihydrouridine synthase (Dus) E3E12_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E12_05025 PF00672 HAMP domain E3E12_05030 PF02954 Bacterial regulatory protein, Fis family E3E12_05030 PF00072 Response regulator receiver domain E3E12_05030 PF00158 Sigma-54 interaction domain E3E12_05035 PF17209 Hfq protein E3E12_05040 PF01926 50S ribosome-binding GTPase E3E12_05040 PF13167 GTP-binding GTPase N-terminal E3E12_05040 PF16360 GTP-binding GTPase Middle Region E3E12_05060 PF00572 Ribosomal protein L13 E3E12_05065 PF00380 Ribosomal protein S9/S16 E3E12_05070 PF01063 Amino-transferase class IV E3E12_05075 PF03454 MoeA C-terminal region (domain IV) E3E12_05075 PF00994 Probable molybdopterin binding domain E3E12_05075 PF03453 MoeA N-terminal region (domain I and II) E3E12_05080 PF06463 Molybdenum Cofactor Synthesis C E3E12_05080 PF04055 Radical SAM superfamily E3E12_05085 PF01967 MoaC family E3E12_05090 PF12804 MobA-like NTP transferase domain E3E12_05090 PF01967 MoaC family E3E12_05095 PF02391 MoaE protein E3E12_05100 PF00593 TonB dependent receptor E3E12_05100 PF07715 TonB-dependent Receptor Plug Domain E3E12_05100 PF07660 Secretin and TonB N terminus short domain E3E12_05105 PF13185 GAF domain E3E12_05110 PF02677 Epoxyqueuosine reductase QueH E3E12_05120 PF00892 EamA-like transporter family E3E12_05135 PF03692 Putative zinc- or iron-chelating domain E3E12_05155 PF13533 Biotin-lipoyl like E3E12_05175 PF00854 POT family E3E12_05190 PF01070 FMN-dependent dehydrogenase E3E12_05195 PF14489 QueF-like protein E3E12_05205 PF13667 ThiC-associated domain E3E12_05205 PF01964 Radical SAM ThiC family E3E12_05210 PF01266 FAD dependent oxidoreductase E3E12_05220 PF05690 Thiazole biosynthesis protein ThiG E3E12_05225 PF02581 Thiamine monophosphate synthase E3E12_05230 PF00899 ThiF family E3E12_05235 PF08543 Phosphomethylpyrimidine kinase E3E12_05235 PF02581 Thiamine monophosphate synthase E3E12_05235 PF03070 TENA/THI-4/PQQC family E3E12_05240 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_05245 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3E12_05255 PF12705 PD-(D/E)XK nuclease superfamily E3E12_05255 PF00580 UvrD/REP helicase N-terminal domain E3E12_05255 PF13361 UvrD-like helicase C-terminal domain E3E12_05260 PF00085 Thioredoxin E3E12_05265 PF00570 HRDC domain E3E12_05265 PF01612 3'-5' exonuclease E3E12_05280 PF00294 pfkB family carbohydrate kinase E3E12_05305 PF04055 Radical SAM superfamily E3E12_05305 PF13186 Iron-sulfur cluster-binding domain E3E12_05310 PF01595 Cyclin M transmembrane N-terminal domain E3E12_05310 PF00571 CBS domain E3E12_05310 PF03471 Transporter associated domain E3E12_05315 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3E12_05330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3E12_05330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3E12_05335 PF00162 Phosphoglycerate kinase E3E12_05340 PF04542 Sigma-70 region 2 E3E12_05340 PF00140 Sigma-70 factor, region 1.2 E3E12_05340 PF04545 Sigma-70, region 4 E3E12_05345 PF00849 RNA pseudouridylate synthase E3E12_05355 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3E12_05355 PF00588 SpoU rRNA Methylase family E3E12_05365 PF00230 Major intrinsic protein E3E12_05370 PF00204 DNA gyrase B E3E12_05370 PF00986 DNA gyrase B subunit, carboxyl terminus E3E12_05370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E12_05370 PF01751 Toprim domain E3E12_05385 PF00691 OmpA family E3E12_05390 PF01131 DNA topoisomerase E3E12_05390 PF01751 Toprim domain E3E12_05390 PF13368 Topoisomerase C-terminal repeat E3E12_05390 PF01396 Topoisomerase DNA binding C4 zinc finger E3E12_05395 PF17782 DprA winged helix domain E3E12_05395 PF02481 DNA recombination-mediator protein A E3E12_05400 PF02660 Glycerol-3-phosphate acyltransferase E3E12_05405 PF01979 Amidohydrolase family E3E12_05410 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3E12_05410 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3E12_05415 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3E12_05430 PF00730 HhH-GPD superfamily base excision DNA repair protein E3E12_05430 PF00633 Helix-hairpin-helix motif E3E12_05430 PF10576 Iron-sulfur binding domain of endonuclease III E3E12_05445 PF03330 Lytic transglycolase E3E12_05450 PF01220 Dehydroquinase class II E3E12_05455 PF00364 Biotin-requiring enzyme E3E12_05460 PF02785 Biotin carboxylase C-terminal domain E3E12_05460 PF00289 Biotin carboxylase, N-terminal domain E3E12_05460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3E12_05470 PF00005 ABC transporter E3E12_05475 PF00005 ABC transporter E3E12_05480 PF00528 Binding-protein-dependent transport system inner membrane component E3E12_05485 PF17384 RimP C-terminal SH3 domain E3E12_05485 PF02576 RimP N-terminal domain E3E12_05490 PF13184 NusA-like KH domain E3E12_05490 PF00575 S1 RNA binding domain E3E12_05490 PF08529 NusA N-terminal domain E3E12_05500 PF11987 Translation-initiation factor 2 E3E12_05500 PF00009 Elongation factor Tu GTP binding domain E3E12_05500 PF04760 Translation initiation factor IF-2, N-terminal region E3E12_05500 PF08364 Bacterial translation initiation factor IF-2 associated region E3E12_05505 PF02033 Ribosome-binding factor A E3E12_05510 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3E12_05510 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3E12_05515 PF00312 Ribosomal protein S15 E3E12_05520 PF00013 KH domain E3E12_05520 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3E12_05520 PF01138 3' exoribonuclease family, domain 1 E3E12_05520 PF03725 3' exoribonuclease family, domain 2 E3E12_05520 PF00575 S1 RNA binding domain E3E12_05535 PF06969 HemN C-terminal domain E3E12_05535 PF04055 Radical SAM superfamily E3E12_05540 PF02705 K+ potassium transporter E3E12_05545 PF01168 Alanine racemase, N-terminal domain E3E12_05550 PF01189 16S rRNA methyltransferase RsmB/F E3E12_05550 PF01029 NusB family E3E12_05560 PF00248 Aldo/keto reductase family E3E12_05565 PF01545 Cation efflux family E3E12_05565 PF16916 Dimerisation domain of Zinc Transporter E3E12_05570 PF01545 Cation efflux family E3E12_05585 PF00155 Aminotransferase class I and II E3E12_05600 PF00156 Phosphoribosyl transferase domain E3E12_05600 PF13537 Glutamine amidotransferase domain E3E12_05605 PF00206 Lyase E3E12_05605 PF10415 Fumarase C C-terminus E3E12_05610 PF00390 Malic enzyme, N-terminal domain E3E12_05610 PF03949 Malic enzyme, NAD binding domain E3E12_05615 PF03918 Cytochrome C biogenesis protein E3E12_05620 PF08534 Redoxin E3E12_05625 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3E12_05625 PF01578 Cytochrome C assembly protein E3E12_05630 PF03100 CcmE E3E12_05640 PF01578 Cytochrome C assembly protein E3E12_05650 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3E12_05665 PF12002 MgsA AAA+ ATPase C terminal E3E12_05665 PF00004 ATPase family associated with various cellular activities (AAA) E3E12_05665 PF16193 AAA C-terminal domain E3E12_05670 PF01479 S4 domain E3E12_05670 PF00849 RNA pseudouridylate synthase E3E12_05695 PF04379 ApaG domain E3E12_05720 PF00701 Dihydrodipicolinate synthetase family E3E12_05740 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_05745 PF01960 ArgJ family E3E12_05755 PF07517 SecA DEAD-like domain E3E12_05755 PF01043 SecA preprotein cross-linking domain E3E12_05755 PF07516 SecA Wing and Scaffold domain E3E12_05755 PF02810 SEC-C motif E3E12_05760 PF01709 Transcriptional regulator E3E12_05765 PF02075 Crossover junction endodeoxyribonuclease RuvC E3E12_05770 PF01330 RuvA N terminal domain E3E12_05770 PF07499 RuvA, C-terminal domain E3E12_05775 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3E12_05775 PF17864 RuvB AAA lid domain E3E12_05775 PF05491 RuvB C-terminal winged helix domain E3E12_05780 PF03061 Thioesterase superfamily E3E12_05785 PF01618 MotA/TolQ/ExbB proton channel family E3E12_05790 PF02472 Biopolymer transport protein ExbD/TolR E3E12_05800 PF04052 TolB amino-terminal domain E3E12_05800 PF07676 WD40-like Beta Propeller Repeat E3E12_05805 PF00691 OmpA family E3E12_05815 PF01171 PP-loop family E3E12_05820 PF00004 ATPase family associated with various cellular activities (AAA) E3E12_05820 PF17862 AAA+ lid domain E3E12_05820 PF01434 Peptidase family M41 E3E12_05820 PF06480 FtsH Extracellular E3E12_05825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3E12_05825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3E12_05825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3E12_05825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3E12_05830 PF00486 Transcriptional regulatory protein, C terminal E3E12_05830 PF00072 Response regulator receiver domain E3E12_05845 PF02073 Thermophilic metalloprotease (M29) E3E12_05850 PF00155 Aminotransferase class I and II E3E12_05855 PF02779 Transketolase, pyrimidine binding domain E3E12_05855 PF00456 Transketolase, thiamine diphosphate binding domain E3E12_05855 PF02780 Transketolase, C-terminal domain E3E12_05860 PF00342 Phosphoglucose isomerase E3E12_05865 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3E12_05865 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain E3E12_05875 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E3E12_05880 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3E12_05905 PF02569 Pantoate-beta-alanine ligase E3E12_05910 PF00465 Iron-containing alcohol dehydrogenase E3E12_05915 PF01053 Cys/Met metabolism PLP-dependent enzyme E3E12_05930 PF00476 DNA polymerase family A E3E12_05930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3E12_05930 PF01367 5'-3' exonuclease, C-terminal SAM fold E3E12_05930 PF01612 3'-5' exonuclease E3E12_05935 PF13419 Haloacid dehalogenase-like hydrolase E3E12_05940 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E3E12_05940 PF02844 Phosphoribosylglycinamide synthetase, N domain E3E12_05940 PF02843 Phosphoribosylglycinamide synthetase, C domain E3E12_05945 PF13742 OB-fold nucleic acid binding domain E3E12_05945 PF02601 Exonuclease VII, large subunit E3E12_05975 PF04865 Baseplate J-like protein E3E12_06030 PF07030 Protein of unknown function (DUF1320) E3E12_06080 PF03237 Terminase-like family E3E12_06130 PF09077 Mu B transposition protein, C terminal E3E12_06130 PF13401 AAA domain E3E12_06135 PF09299 Mu transposase, C-terminal E3E12_06135 PF02316 Mu DNA-binding domain E3E12_06135 PF02914 Bacteriophage Mu transposase E3E12_06135 PF09039 Mu DNA binding, I gamma subdomain E3E12_06150 PF12111 Polyribonucleotide phosphorylase C terminal E3E12_06150 PF10150 Ribonuclease E/G family E3E12_06150 PF00575 S1 RNA binding domain E3E12_06155 PF01520 N-acetylmuramoyl-L-alanine amidase E3E12_06155 PF11741 AMIN domain E3E12_06165 PF04085 rod shape-determining protein MreC E3E12_06175 PF00905 Penicillin binding protein transpeptidase domain E3E12_06175 PF03717 Penicillin-binding Protein dimerisation domain E3E12_06180 PF01098 Cell cycle protein E3E12_06185 PF02092 Glycyl-tRNA synthetase beta subunit E3E12_06185 PF05746 DALR anticodon binding domain E3E12_06190 PF02091 Glycyl-tRNA synthetase alpha subunit E3E12_06200 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_06200 PF14759 Reductase C-terminal E3E12_06205 PF01336 OB-fold nucleic acid binding domain E3E12_06205 PF00152 tRNA synthetases class II (D, K and N) E3E12_06205 PF02938 GAD domain E3E12_06220 PF01966 HD domain E3E12_06220 PF13286 Phosphohydrolase-associated domain E3E12_06225 PF00750 tRNA synthetases class I (R) E3E12_06225 PF03485 Arginyl tRNA synthetase N terminal domain E3E12_06225 PF05746 DALR anticodon binding domain E3E12_06235 PF02416 mttA/Hcf106 family E3E12_06240 PF00902 Sec-independent protein translocase protein (TatC) E3E12_06245 PF02403 Seryl-tRNA synthetase N-terminal domain E3E12_06245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3E12_06265 PF00175 Oxidoreductase NAD-binding domain E3E12_06265 PF00970 Oxidoreductase FAD-binding domain E3E12_06270 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_06270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3E12_06280 PF01474 Class-II DAHP synthetase family E3E12_06295 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3E12_06300 PF07885 Ion channel E3E12_06300 PF17655 Inward rectifier potassium channel C-terminal domain E3E12_06310 PF09190 DALR domain E3E12_06310 PF01406 tRNA synthetases class I (C) catalytic domain E3E12_06315 PF01554 MatE E3E12_06320 PF07690 Major Facilitator Superfamily E3E12_06325 PF01479 S4 domain E3E12_06325 PF00163 Ribosomal protein S4/S9 N-terminal domain E3E12_06340 PF00484 Carbonic anhydrase E3E12_06345 PF01411 tRNA synthetases class II (A) E3E12_06345 PF02272 DHHA1 domain E3E12_06345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3E12_06350 PF00691 OmpA family E3E12_06355 PF01761 3-dehydroquinate synthase E3E12_06360 PF01202 Shikimate kinase E3E12_06370 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3E12_06375 PF18146 Damage-inducible protein CinA KH domain E3E12_06375 PF00994 Probable molybdopterin binding domain E3E12_06375 PF02464 Competence-damaged protein E3E12_06380 PF08450 SMP-30/Gluconolactonase/LRE-like region E3E12_06385 PF00293 NUDIX domain E3E12_06390 PF02699 Preprotein translocase subunit E3E12_06395 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3E12_06395 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3E12_06400 PF01192 RNA polymerase Rpb6 E3E12_06405 PF04607 Region found in RelA / SpoT proteins E3E12_06405 PF13291 ACT domain E3E12_06405 PF02824 TGS domain E3E12_06410 PF01648 4'-phosphopantetheinyl transferase superfamily E3E12_06415 PF10502 Signal peptidase, peptidase S26 E3E12_06420 PF00035 Double-stranded RNA binding motif E3E12_06420 PF14622 Ribonuclease-III-like E3E12_06425 PF01926 50S ribosome-binding GTPase E3E12_06425 PF07650 KH domain E3E12_06430 PF00696 Amino acid kinase family E3E12_06435 PF01765 Ribosome recycling factor E3E12_06440 PF01255 Putative undecaprenyl diphosphate synthase E3E12_06450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3E12_06450 PF13288 DXP reductoisomerase C-terminal domain E3E12_06450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3E12_06455 PF17820 PDZ domain E3E12_06455 PF02163 Peptidase family M50 E3E12_06460 PF07244 Surface antigen variable number repeat E3E12_06460 PF01103 Surface antigen E3E12_06470 PF00132 Bacterial transferase hexapeptide (six repeats) E3E12_06470 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3E12_06475 PF07977 FabA-like domain E3E12_06480 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3E12_06480 PF00132 Bacterial transferase hexapeptide (six repeats) E3E12_06485 PF17930 LpxI N-terminal domain E3E12_06485 PF06230 LpxI C-terminal domain E3E12_06490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3E12_06495 PF00468 Ribosomal protein L34 E3E12_06500 PF00825 Ribonuclease P E3E12_06505 PF01809 Putative membrane protein insertion efficiency factor E3E12_06510 PF14849 YidC periplasmic domain E3E12_06510 PF02096 60Kd inner membrane protein E3E12_06515 PF01926 50S ribosome-binding GTPase E3E12_06520 PF00696 Amino acid kinase family E3E12_06530 PF14602 Hexapeptide repeat of succinyl-transferase E3E12_06530 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3E12_06530 PF00132 Bacterial transferase hexapeptide (six repeats) E3E12_06535 PF07687 Peptidase dimerisation domain E3E12_06535 PF01546 Peptidase family M20/M25/M40 E3E12_06540 PF01416 tRNA pseudouridine synthase E3E12_06545 PF02911 Formyl transferase, C-terminal domain E3E12_06545 PF00551 Formyl transferase E3E12_06550 PF01327 Polypeptide deformylase E3E12_06555 PF00005 ABC transporter E3E12_06570 PF01380 SIS domain E3E12_06570 PF00571 CBS domain E3E12_06575 PF00570 HRDC domain E3E12_06575 PF01612 3'-5' exonuclease E3E12_06590 PF03109 ABC1 family E3E12_06620 PF00710 Asparaginase, N-terminal E3E12_06620 PF17763 Glutaminase/Asparaginase C-terminal domain E3E12_06625 PF02080 TrkA-C domain E3E12_06625 PF06826 Predicted Permease Membrane Region E3E12_06630 PF17757 UvrB interaction domain E3E12_06630 PF12344 Ultra-violet resistance protein B E3E12_06630 PF02151 UvrB/uvrC motif E3E12_06630 PF04851 Type III restriction enzyme, res subunit E3E12_06630 PF00271 Helicase conserved C-terminal domain E3E12_06635 PF01272 Transcription elongation factor, GreA/GreB, C-term E3E12_06635 PF03449 Transcription elongation factor, N-terminal E3E12_06640 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3E12_06640 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3E12_06645 PF08241 Methyltransferase domain E3E12_06650 PF03358 NADPH-dependent FMN reductase E3E12_06660 PF05193 Peptidase M16 inactive domain E3E12_06660 PF00675 Insulinase (Peptidase family M16) E3E12_06665 PF00291 Pyridoxal-phosphate dependent enzyme E3E12_06665 PF14821 Threonine synthase N terminus E3E12_06670 PF08335 GlnD PII-uridylyltransferase E3E12_06670 PF01966 HD domain E3E12_06675 PF05190 MutS family domain IV E3E12_06675 PF00488 MutS domain V E3E12_06675 PF01624 MutS domain I E3E12_06675 PF05188 MutS domain II E3E12_06675 PF05192 MutS domain III E3E12_06680 PF03023 Lipid II flippase MurJ E3E12_06685 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3E12_06685 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3E12_06690 PF00814 Glycoprotease family E3E12_06695 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3E12_06695 PF03900 Porphobilinogen deaminase, C-terminal domain E3E12_06705 PF02556 Preprotein translocase subunit SecB E3E12_06725 PF01032 FecCD transport family E3E12_06730 PF00005 ABC transporter E3E12_06735 PF01048 Phosphorylase superfamily E3E12_06740 PF01738 Dienelactone hydrolase family E3E12_06745 PF00166 Chaperonin 10 Kd subunit E3E12_06750 PF00118 TCP-1/cpn60 chaperonin family E3E12_06755 PF04851 Type III restriction enzyme, res subunit E3E12_06755 PF13307 Helicase C-terminal domain E3E12_06760 PF01921 tRNA synthetases class I (K) E3E12_06775 PF01027 Inhibitor of apoptosis-promoting Bax1 E3E12_06780 PF00037 4Fe-4S binding domain E3E12_06780 PF11953 Domain of unknown function (DUF3470) E3E12_06795 PF00883 Cytosol aminopeptidase family, catalytic domain E3E12_06795 PF02789 Cytosol aminopeptidase family, N-terminal domain E3E12_06805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3E12_06815 PF12848 ABC transporter E3E12_06815 PF00005 ABC transporter E3E12_06820 PF00334 Nucleoside diphosphate kinase E3E12_06825 PF00551 Formyl transferase E3E12_06830 PF02769 AIR synthase related protein, C-terminal domain E3E12_06830 PF00586 AIR synthase related protein, N-terminal domain E3E12_06840 PF17941 Polyphosphate kinase C-terminal domain 1 E3E12_06840 PF13089 Polyphosphate kinase N-terminal domain E3E12_06840 PF02503 Polyphosphate kinase middle domain E3E12_06840 PF13090 Polyphosphate kinase C-terminal domain 2 E3E12_06845 PF02541 Ppx/GppA phosphatase family E3E12_06855 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3E12_06855 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3E12_06875 PF02540 NAD synthase E3E12_06875 PF00117 Glutamine amidotransferase class-I E3E12_06875 PF00958 GMP synthase C terminal domain E3E12_06880 PF04261 Dyp-type peroxidase family E3E12_06890 PF02887 Pyruvate kinase, alpha/beta domain E3E12_06890 PF00224 Pyruvate kinase, barrel domain E3E12_06905 PF01370 NAD dependent epimerase/dehydratase family E3E12_06925 PF01593 Flavin containing amine oxidoreductase E3E12_06930 PF13243 Squalene-hopene cyclase C-terminal domain E3E12_06930 PF13249 Squalene-hopene cyclase N-terminal domain E3E12_06940 PF00318 Ribosomal protein S2 E3E12_06945 PF00889 Elongation factor TS E3E12_06950 PF02565 Recombination protein O C terminal E3E12_06950 PF11967 Recombination protein O N terminal E3E12_06955 PF03989 DNA gyrase C-terminal domain, beta-propeller E3E12_06955 PF00521 DNA gyrase/topoisomerase IV, subunit A E3E12_06960 PF13091 PLD-like domain E3E12_06960 PF13396 Phospholipase_D-nuclease N-terminal E3E12_06970 PF01078 Magnesium chelatase, subunit ChlI E3E12_06970 PF13335 Magnesium chelatase, subunit ChlI C-terminal E3E12_06975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3E12_06975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3E12_06980 PF00459 Inositol monophosphatase family E3E12_06985 PF02348 Cytidylyltransferase E3E12_06990 PF00800 Prephenate dehydratase E3E12_06990 PF01817 Chorismate mutase type II E3E12_06995 PF00701 Dihydrodipicolinate synthetase family E3E12_07000 PF01668 SmpB protein E3E12_07005 PF00313 'Cold-shock' DNA-binding domain E3E12_07010 PF00270 DEAD/DEAH box helicase E3E12_07010 PF00271 Helicase conserved C-terminal domain E3E12_07010 PF17191 RecG wedge domain E3E12_07015 PF02559 CarD-like/TRCF domain E3E12_07015 PF17757 UvrB interaction domain E3E12_07015 PF03461 TRCF domain E3E12_07015 PF00271 Helicase conserved C-terminal domain E3E12_07015 PF00270 DEAD/DEAH box helicase E3E12_07035 PF00175 Oxidoreductase NAD-binding domain E3E12_07035 PF00042 Globin E3E12_07035 PF00970 Oxidoreductase FAD-binding domain E3E12_07040 PF02082 Transcriptional regulator E3E12_07050 PF01728 FtsJ-like methyltransferase E3E12_07070 PF00478 IMP dehydrogenase / GMP reductase domain E3E12_07070 PF00571 CBS domain E3E12_07075 PF01029 NusB family E3E12_07075 PF01189 16S rRNA methyltransferase RsmB/F E3E12_07085 PF03372 Endonuclease/Exonuclease/phosphatase family E3E12_07095 PF01541 GIY-YIG catalytic domain E3E12_07095 PF08459 UvrC Helix-hairpin-helix N-terminal E3E12_07095 PF02151 UvrB/uvrC motif E3E12_07095 PF12826 Helix-hairpin-helix motif E3E12_07100 PF01066 CDP-alcohol phosphatidyltransferase E3E12_07105 PF00471 Ribosomal protein L33 E3E12_07115 PF03952 Enolase, N-terminal domain E3E12_07115 PF00113 Enolase, C-terminal TIM barrel domain E3E12_07120 PF00793 DAHP synthetase I family E3E12_07125 PF06418 CTP synthase N-terminus E3E12_07125 PF00117 Glutamine amidotransferase class-I E3E12_07135 PF00121 Triosephosphate isomerase E3E12_07145 PF04715 Anthranilate synthase component I, N terminal region E3E12_07145 PF00425 chorismate binding enzyme E3E12_07150 PF00117 Glutamine amidotransferase class-I E3E12_07155 PF00591 Glycosyl transferase family, a/b domain E3E12_07155 PF02885 Glycosyl transferase family, helical bundle domain E3E12_07160 PF00218 Indole-3-glycerol phosphate synthase E3E12_07165 PF00676 Dehydrogenase E1 component E3E12_07170 PF00364 Biotin-requiring enzyme E3E12_07170 PF02779 Transketolase, pyrimidine binding domain E3E12_07170 PF02780 Transketolase, C-terminal domain E3E12_07175 PF02817 e3 binding domain E3E12_07175 PF00364 Biotin-requiring enzyme E3E12_07175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3E12_07180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3E12_07180 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3E12_07185 PF04055 Radical SAM superfamily E3E12_07190 PF03364 Polyketide cyclase / dehydrase and lipid transport E3E12_07200 PF10397 Adenylosuccinate lyase C-terminus E3E12_07200 PF00206 Lyase E3E12_07205 PF01259 SAICAR synthetase E3E12_07210 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase E3E12_07225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3E12_07225 PF02769 AIR synthase related protein, C-terminal domain E3E12_07225 PF00586 AIR synthase related protein, N-terminal domain E3E12_07235 PF00462 Glutaredoxin E3E12_07245 PF02021 Uncharacterised protein family UPF0102 E3E12_07250 PF00490 Delta-aminolevulinic acid dehydratase E3E12_07255 PF13520 Amino acid permease E3E12_07260 PF00464 Serine hydroxymethyltransferase E3E12_07265 PF00271 Helicase conserved C-terminal domain E3E12_07265 PF00270 DEAD/DEAH box helicase E3E12_07290 PF01638 HxlR-like helix-turn-helix E3E12_07295 PF02321 Outer membrane efflux protein E3E12_07300 PF13533 Biotin-lipoyl like E3E12_07310 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_07310 PF00107 Zinc-binding dehydrogenase E3E12_07350 PF01702 Queuine tRNA-ribosyltransferase E3E12_07355 PF02547 Queuosine biosynthesis protein E3E12_07365 PF04333 MlaA lipoprotein E3E12_07375 PF01263 Aldose 1-epimerase E3E12_07380 PF06426 Serine acetyltransferase, N-terminal E3E12_07380 PF00132 Bacterial transferase hexapeptide (six repeats) E3E12_07410 PF08240 Alcohol dehydrogenase GroES-like domain E3E12_07410 PF00107 Zinc-binding dehydrogenase E3E12_07430 PF00684 DnaJ central domain E3E12_07430 PF01556 DnaJ C terminal domain E3E12_07430 PF00226 DnaJ domain E3E12_07440 PF13180 PDZ domain E3E12_07445 PF01883 Iron-sulfur cluster assembly protein E3E12_07445 PF10609 NUBPL iron-transfer P-loop NTPase E3E12_07465 PF01494 FAD binding domain E3E12_07475 PF00288 GHMP kinases N terminal domain E3E12_07475 PF08544 GHMP kinases C terminal E3E12_07485 PF00920 Dehydratase family E3E12_07490 PF01081 KDPG and KHG aldolase E3E12_07500 PF02142 MGS-like domain E3E12_07500 PF01808 AICARFT/IMPCHase bienzyme E3E12_07510 PF01513 ATP-NAD kinase E3E12_07515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3E12_07515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3E12_07520 PF01451 Low molecular weight phosphotyrosine protein phosphatase E3E12_07525 PF13520 Amino acid permease E3E12_07535 PF01740 STAS domain E3E12_07535 PF00916 Sulfate permease family E3E12_07650 PF02661 Fic/DOC family E3E12_07650 PF17841 BID domain of Bartonella effector protein (Bep) E3E12_07660 PF07687 Peptidase dimerisation domain E3E12_07660 PF01546 Peptidase family M20/M25/M40 E3E12_07670 PF07690 Major Facilitator Superfamily E3E12_07730 PF05816 Toxic anion resistance protein (TelA) E3E12_07760 PF00296 Luciferase-like monooxygenase E3E12_07770 PF06114 IrrE N-terminal-like domain E3E12_08050 PF02685 Glucokinase E3E12_08055 PF00106 short chain dehydrogenase E3E12_08195 PF02934 GatB/GatE catalytic domain E3E12_08195 PF02637 GatB domain E3E12_08200 PF01425 Amidase E3E12_08205 PF02686 Glu-tRNAGln amidotransferase C subunit E3E12_08210 PF03652 Holliday junction resolvase E3E12_08250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3E12_08250 PF00205 Thiamine pyrophosphate enzyme, central domain E3E12_08250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3E12_08270 PF00892 EamA-like transporter family E3E12_08305 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3E12_08310 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3E12_08320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3E12_08325 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3E12_08345 PF01197 Ribosomal protein L31 E3E12_08355 PF00731 AIR carboxylase E3E12_08360 PF02222 ATP-grasp domain E3E12_08360 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3E12_08370 PF01555 DNA methylase E3E12_08390 PF04002 RadC-like JAB domain E3E12_08395 PF00580 UvrD/REP helicase N-terminal domain E3E12_08395 PF13361 UvrD-like helicase C-terminal domain E3E12_08415 PF00557 Metallopeptidase family M24 E3E12_08425 PF00899 ThiF family E3E12_08425 PF00581 Rhodanese-like domain E3E12_08435 PF00248 Aldo/keto reductase family E3E12_08440 PF08264 Anticodon-binding domain of tRNA E3E12_08440 PF10458 Valyl tRNA synthetase tRNA binding arm E3E12_08440 PF00133 tRNA synthetases class I (I, L, M and V) E3E12_08445 PF01380 SIS domain E3E12_08450 PF00132 Bacterial transferase hexapeptide (six repeats) E3E12_08450 PF14602 Hexapeptide repeat of succinyl-transferase E3E12_08450 PF12804 MobA-like NTP transferase domain E3E12_08460 PF01751 Toprim domain E3E12_08460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3E12_08460 PF00986 DNA gyrase B subunit, carboxyl terminus E3E12_08460 PF00204 DNA gyrase B E3E12_08465 PF02463 RecF/RecN/SMC N terminal domain E3E12_08470 PF07549 SecD/SecF GG Motif E3E12_08470 PF02355 Protein export membrane protein E3E12_08475 PF02355 Protein export membrane protein E3E12_08475 PF07549 SecD/SecF GG Motif E3E12_08480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3E12_08480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3E12_08505 PF03477 ATP cone domain E3E12_08510 PF01029 NusB family E3E12_08515 PF02769 AIR synthase related protein, C-terminal domain E3E12_08515 PF00586 AIR synthase related protein, N-terminal domain E3E12_08525 PF04371 Porphyromonas-type peptidyl-arginine deiminase E3E12_08555 PF01594 AI-2E family transporter E3E12_08560 PF00692 dUTPase E3E12_08565 PF02441 Flavoprotein E3E12_08565 PF04127 DNA / pantothenate metabolism flavoprotein E3E12_08570 PF01209 ubiE/COQ5 methyltransferase family E3E12_08575 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3E12_08575 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3E12_08575 PF06827 Zinc finger found in FPG and IleRS E3E12_08580 PF01649 Ribosomal protein S20